Citrus Sinensis ID: 009993

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520
Protein Sequence
MAFECQRVTRVSKDLANSVEDSLQSQIESELNNLNFEIEATKSTLESKQLPCNDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSGKLKA
Secondary Structure (PSIPRED)
ccccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEcccccccEEEEEEEccccccEEEEEEEccccEEEEEEcEEccEEEEccccEEEEEEEEEccEEEEEEccccccccccccHHHHccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEccccEEEEEEccccEEEEEcccccccccccccccccccEEEEccccccEEEEEccccEEEEEEccccEEEEEcccccEEEEEccccEEEEEEccccEEEEEccccEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccccEEEEEccccccEEEEEEcccEEEEEcccccEEEEEccccccccccccccEEEEEEEccccccccccccccEEEEEEcccEEEEEcccccEEEEEccccccccccccccEEEEEEEcccccEEEEEEccccEEEEEccccccEEccccccccEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHccccccccHHHccccccccccccccccccEEEEccccccccccccEEEcccccEEEEEcccccccEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEcccccccccccccccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEcccccEEEEEccccEEEEEEcccccccEEEEEccccccEEEEEccccccEEEEEEcccEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccccccccEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccccccccEEEEEccccccEEEEEEcccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccEEEEcccccEEEEEEccccHHHHHHHHHcccccccEEEEEEcccccEEEEccccccEEEEEEcccccccccEEEEEEEcccccEcc
Coil and Loop (DISEMBL)
MAFECQRVTRVSKDLANSVEDSLQSQIESELNNLNFEIEATKStleskqlpcndvlsnlhrstitdlppaLISEILncldpkelgivscvspilhrlasdhHAWKEFycerwglpiasaplgagfsddkSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLedgfsiasskplgcTIRAVAADKKLLvaggtdgfiHCWRAVEVlphlfdisgsekqNTQFRLwehegpitslaldltriysgswdmTVRVWDRALLKCLKVLrhsdwvyglaphdttvastsgsdvyiwdtnsgclltvvngahvgntkslarshtgdflftggedgaIHMYEIINDCTEANVLLVATWiphtgpvnslafefpwlvsaagdgklSLIDVRKLLrsgrptsgkrvsrvieveppqrmlhgfecnllsvdigadrivcggEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTemsskggrtdqcsvaakknpmngnrrsvwhnkrgmsgklka
Flexible Loop (DISEMBL)
mafecqrvtrvskdlansvEDSLQSQIESELNNLNFEIEATKStleskqlpcNDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKllrsgrptsgkrvsrvieveppqrmlhgfECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARalrgirlenrmrrrklqtemsskggrtdqcsvaakknpmngnrrsvwhnkrgmsgklka
Low Complexity Region (SEG)
MAFECQRVTRVSKDLANSVEDSLQSQIESELNNLNFEIEATKSTLESKQLPCNDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSGKLKA
Disordered region (IsUnstruct)
*************************************************LPCNDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLR***********RVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIR*****************************************************
Disordered Region (DISOPRED)
MAFECQRVTRVSKDLANSVEDSLQSQIESELNNLNFEIEATKSTLESKQLPCNDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSGKLKA
Disordered Region (DISEMBL)
*********RVSKDLANSVEDSLQSQIESELNNLNFEIEATKSTLESKQLPCNDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRS*********SRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRR**************QCSVAAKKNPMNGNRRSVWHNKR********
Disordered Region (DISPRO)
****CQ**T*VSKDLANSVEDSLQSQIESELNNLNFEIEATKSTLESKQLPCNDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSGKL**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAFECQRVTRVSKDLANSVEDSLQSQIESELNNLNFEIEATKSTLESKQLPCNDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSGKLKA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	520	2.2.26 [Sep-21-2011]
Q94AD8	539	F-box/WD-40 repeat-contai	yes	no	0.990	0.955	0.628	0.0
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.526	0.179	0.269	7e-14
Q969H0	707	F-box/WD repeat-containin	yes	no	0.380	0.280	0.246	2e-12
Q00808	1356	Vegetative incompatibilit	yes	no	0.542	0.207	0.265	3e-12
C5FP68	674	Probable E3 ubiquitin lig	N/A	no	0.461	0.356	0.254	6e-12
Q8VBV4	629	F-box/WD repeat-containin	no	no	0.380	0.314	0.246	6e-12
D4AM37	663	Probable E3 ubiquitin lig	N/A	no	0.461	0.361	0.254	1e-11
D4D8P3	663	Probable E3 ubiquitin lig	N/A	no	0.461	0.361	0.254	1e-11
Q9VZF4	1326	F-box/WD repeat-containin	yes	no	0.376	0.147	0.239	4e-11
Q6FT96	711	Mitochondrial division pr	yes	no	0.698	0.510	0.227	7e-11

>sp|Q94AD8|FBW3_ARATH F-box/WD-40 repeat-containing protein At5g21040 OS=Arabidopsis thaliana GN=At5g21040 PE=2 SV=1

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/544 (62%), Positives = 413/544 (75%), Gaps = 29/544 (5%)

Query: 1   MAFECQRVTRVSKDLAN-----SVEDSLQSQIESELNNLNFEIEATKSTL---ESKQLPC 52
           M FECQ     + D  +     + +  + +    E+ N+    +  K TL    SKQL  
Sbjct: 1   MEFECQERLEAANDQRSESGLLNTDLRIGNDGSVEIPNVKLCCQKKKGTLVPSGSKQLLS 60

Query: 53  NDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERW 112
           +  LS    +TI DLP ALISEILNCLDPKELG+VSCVS  LHRLAS+HHAWKEFY ERW
Sbjct: 61  DKDLS----TTIIDLPQALISEILNCLDPKELGLVSCVSTYLHRLASEHHAWKEFYRERW 116

Query: 113 GLPIASAPLGAGFSDDKSWKEL----------------IDVLYGHTEAVLTVFVLASAKL 156
           GLP+      +G SD++SWK+L                ID LYGHTEAV TVF+LASAKL
Sbjct: 117 GLPVVFGAASSGLSDERSWKDLFVEREFRSRTFLGRYSIDTLYGHTEAVRTVFLLASAKL 176

Query: 157 LFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLP 216
           +FTSGYDSIVRMW +E+G SIA+SKPLGCTIRA+AAD KLLVAGGTDGFIHCW++++ L 
Sbjct: 177 VFTSGYDSIVRMWDMEEGLSIAASKPLGCTIRALAADTKLLVAGGTDGFIHCWKSLDGLR 236

Query: 217 HLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHS 276
           +LFD++G +K+ T+FRLW HEGPITSLALD+T I+SGSWDM+VR+WDR+ +KC+K LRHS
Sbjct: 237 NLFDLTGFQKEKTEFRLWGHEGPITSLALDMTSIFSGSWDMSVRIWDRSSMKCVKTLRHS 296

Query: 277 DWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE 336
           DWV+GLAPH+TT+ASTSGSDVYIWD +S   L ++  AH G T SLARSHTGDFLFTGGE
Sbjct: 297 DWVWGLAPHETTLASTSGSDVYIWDVSSETPLAIIPDAHEGTTYSLARSHTGDFLFTGGE 356

Query: 337 DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLR 396
           DG I M+EI    +E +V+L++ W+PHT PV SL+FEFPWLVSA+GDGKL+LIDVRKLL+
Sbjct: 357 DGGIKMFEIRRYGSETSVVLISQWMPHTSPVYSLSFEFPWLVSASGDGKLALIDVRKLLK 416

Query: 397 SGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEI 456
           + R    KR+S    VEPPQRMLHGF  NL SVD+G DRIVCGGEEG VRIWNF+QA EI
Sbjct: 417 TNRCAYSKRISSST-VEPPQRMLHGFGSNLFSVDVGYDRIVCGGEEGTVRIWNFTQALEI 475

Query: 457 ERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSG 516
           ERR RAL+G+R ENRMRRR++Q EM++K GR DQCS+AA KNP+NG R   WH+KR  SG
Sbjct: 476 ERRTRALKGMRHENRMRRRRMQMEMNAKNGRPDQCSIAAHKNPINGERNRAWHSKRRASG 535

Query: 517 KLKA 520
           K KA
Sbjct: 536 KAKA 539

Arabidopsis thaliana (taxid: 3702)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 79.3 bits (194), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 143/327 (43%), Gaps = 53/327 (16%)

Query: 138  LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR--AVAADKK 195
            L GHT  V +V       +L + G D IVR+W +  G  + + +     +R    + +  
Sbjct: 1070 LQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGV 1129

Query: 196  LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG 253
             L  G +D  +  W          DIS    +   + L  H   + ++A   D   + SG
Sbjct: 1130 TLANGSSDQIVRLW----------DIS---SKKCLYTLQGHTNWVNAVAFSPDGATLASG 1176

Query: 254  SWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVAS-TSGSDVYIWDTNSGCLLT 309
            S D TVR+WD +  KCL +L+ H+ WV  +   P  +T+AS +S   V +W+ NS   L 
Sbjct: 1177 SGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLC 1236

Query: 310  VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNS 369
               G H     S+  +  G  L +G  D  + +++I      ++   + T+  HT  VNS
Sbjct: 1237 TFQG-HTSWVNSVVFNPDGSMLASGSSDKTVRLWDI------SSSKCLHTFQGHTNWVNS 1289

Query: 370  LAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN---L 426
            +AF          DG         +L SG   SG +  R+ E+    + LH F+ +   +
Sbjct: 1290 VAFN--------PDG--------SMLASG---SGDQTVRLWEI-SSSKCLHTFQGHTSWV 1329

Query: 427  LSVDIGAD--RIVCGGEEGIVRIWNFS 451
             SV    D   +  G ++  VR+W+ S
Sbjct: 1330 SSVTFSPDGTMLASGSDDQTVRLWSIS 1356

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q969H0|FBXW7_HUMAN F-box/WD repeat-containing protein 7 OS=Homo sapiens GN=FBXW7 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 88/215 (40%), Gaps = 17/215 (7%)

Query: 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAA 192
           E I  LYGHT  V  + +    K + +   D+ +R+W +E G  +         +R V  
Sbjct: 452 ECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 509

Query: 193 DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYS 252
           D + +V+G  D  +  W               E +     L  H   + SL  D   + S
Sbjct: 510 DGRRVVSGAYDFMVKVWDP-------------ETETCLHTLQGHTNRVYSLQFDGIHVVS 556

Query: 253 GSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTT-VASTSGSDVYIWDTNSGCLLTV 310
           GS D ++RVWD     C+  L  H     G+   D   V+  + S V IWD  +G  L  
Sbjct: 557 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQT 616

Query: 311 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 345
           + G +   +         +F+ T  +DG + ++++
Sbjct: 617 LQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 651

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. Involved in the degradation of cyclin-E, MYC, NOTCH1 released notch intracellular domain (NICD), and probably PSEN1.

Homo sapiens (taxid: 9606)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 73.9 bits (180), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 142/335 (42%), Gaps = 53/335 (15%)

Query: 128  DKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTI 187
            +  W      L GH  +VL+V   A  + + +   D  +++W    G    + +  G ++
Sbjct: 827  EAEWNACTQTLEGHGSSVLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSV 886

Query: 188  RAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL 245
             +VA   D++ + +G  D  I  W A          SG+  Q     L  H G + S+A 
Sbjct: 887  WSVAFSPDRERVASGSDDKTIKIWDAA---------SGTCTQT----LEGHGGRVQSVAF 933

Query: 246  --DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTSGSD-VYI 299
              D  R+ SGS D T+++WD A   C + L  H   V  +A  P    VAS SG   + I
Sbjct: 934  SPDGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKI 993

Query: 300  WDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIN-DCTEANVLLVA 358
            WDT SG     + G H G+  S+A S  G  + +G +D  I +++  +  CT+       
Sbjct: 994  WDTASGTCTQTLEG-HGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQ------- 1045

Query: 359  TWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQ 416
            T   H G V S+ F  +   + S + D  + + D      SG  T               
Sbjct: 1046 TLEGHGGWVQSVVFSPDGQRVASGSDDHTIKIWDA----VSGTCT--------------- 1086

Query: 417  RMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWN 449
            + L G   ++ SV    D  R+  G  +G ++IW+
Sbjct: 1087 QTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWD 1121

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|C5FP68|SCONB_ARTOC Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) GN=sconB PE=3 SV=1

 Score = 72.8 bits (177), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 122/310 (39%), Gaps = 70/310 (22%)

Query: 64  ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEF-------YCER--WGL 114
           +T LPP +  +IL+ LD   L   + VS     LA D   W           CE+  WGL
Sbjct: 215 VTALPPEISFKILSYLDTASLCNAAQVSRNWRHLADDDVVWHRMCEQHIDRKCEKCGWGL 274

Query: 115 PI-------------------ASAPLGAGFSDDKSWKEL-----------------IDVL 138
           P+                     A  G      + WK +                   + 
Sbjct: 275 PMLDRKRLKDTKRQVQLRAAGKEAVTGRQQQQHRPWKAVYMDRFKVGTNWKYGRCTTTIF 334

Query: 139 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLV 198
            GHT  V+ +       +L T  YD+ +++W +E G  I + +    TIR +  D   L+
Sbjct: 335 RGHTNGVMCLQF--DDNILATGSYDATIKIWDIETGKEIRTLRGHESTIRCLQFDDTKLI 392

Query: 199 AGGTDGFIHC--WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD 256
           +G  D  I    WR+ E +      +G            H+G +  L  D T + SGS D
Sbjct: 393 SGSLDRTIKVWSWRSGECIS---TYTG------------HQGGVLCLHFDSTTLASGSKD 437

Query: 257 MTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTSGSD---VYIWDTNSGCLLTVVN 312
            T+++W+    K  ++LR H+DWV  +     +    S SD   V IWD ++G  +    
Sbjct: 438 NTIKIWN-FQDKSTQILRGHTDWVNAVKLDTASRTVFSASDDLTVRIWDLDTGKCIHTYA 496

Query: 313 GAHVGNTKSL 322
           G HVG  + +
Sbjct: 497 G-HVGQVQQV 505

Component of the SCF(sconB) E3 ubiquitin ligase complex involved in the regulation of sulfur metabolite repression, probably by mediating the inactivation or degradation of the metR transcription factor.

Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) (taxid: 554155)

>sp|Q8VBV4|FBXW7_MOUSE F-box/WD repeat-containing protein 7 OS=Mus musculus GN=Fbxw7 PE=1 SV=1

 Score = 72.8 bits (177), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 87/215 (40%), Gaps = 17/215 (7%)

Query: 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAA 192
           E I  LYGHT  V  + +    K + +   D+ +R+W +E G  +         +R V  
Sbjct: 374 ECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 431

Query: 193 DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYS 252
           D + +V+G  D  +  W               E +     L  H   + SL  D   + S
Sbjct: 432 DGRRVVSGAYDFMVKVWDP-------------ETETCLHTLQGHTNRVYSLQFDGIHVVS 478

Query: 253 GSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTT-VASTSGSDVYIWDTNSGCLLTV 310
           GS D ++RVWD     C+  L  H     G+   D   V+  + S V IWD  +G  L  
Sbjct: 479 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQT 538

Query: 311 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 345
           + G     +         +F+ T  +DG + ++++
Sbjct: 539 LQGPSKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 573

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. Involved in the degradation of cyclin-E, MYC, NOTCH1 released notch intracellular domain (NICD), and probably PSEN1.

Mus musculus (taxid: 10090)

>sp|D4AM37|SCONB_ARTBC Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=sconB PE=3 SV=1

 Score = 71.6 bits (174), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 122/311 (39%), Gaps = 71/311 (22%)

Query: 64  ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEF-------YCER--WGL 114
           +T LPP +  +IL+ LD   L   + VS     LA D   W           CE+  WGL
Sbjct: 198 VTALPPEISFKILSYLDTASLCSAAQVSHSWRALADDDVVWHRMCEQHIDRKCEKCGWGL 257

Query: 115 PIAS--------------------APLGAGFSDDKSWKEL-----------------IDV 137
           P+                      AP        + WK +                   +
Sbjct: 258 PMLDRKRLKDTKRQVQLRAAGKEIAPNQRPQQQHRPWKAVYMDRFKVGTNWKYGRCTTTI 317

Query: 138 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLL 197
             GHT  V+ +       +L T  YD+ +++W +E G  I + +    TIR +  D   L
Sbjct: 318 FRGHTNGVMCLQF--DDNILATGSYDATIKIWDIETGKEIRTLRGHESTIRCLQFDDTKL 375

Query: 198 VAGGTDGFIHC--WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSW 255
           ++G  D  I    WR+ E +      +G            H+G +  L  D T + SGS 
Sbjct: 376 ISGSLDRTIKVWNWRSGECIS---TYTG------------HQGGVLCLHFDSTTLASGSK 420

Query: 256 DMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTSGSD---VYIWDTNSGCLLTVV 311
           D T+++W+    K  ++LR H+DWV  +     +    S SD   V IWD ++G  +   
Sbjct: 421 DNTIKIWN-FHDKSTRILRGHADWVNSVKLDTASRTVFSASDDLTVRIWDLDTGKCIHSY 479

Query: 312 NGAHVGNTKSL 322
            G HVG  + +
Sbjct: 480 AG-HVGQVQQV 489

Component of the SCF(sconB) E3 ubiquitin ligase complex involved in the regulation of sulfur metabolite repression, probably by mediating the inactivation or degradation of the metR transcription factor.

Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) (taxid: 663331)

>sp|D4D8P3|SCONB_TRIVH Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Trichophyton verrucosum (strain HKI 0517) GN=sconB PE=3 SV=1

 Score = 71.6 bits (174), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 122/311 (39%), Gaps = 71/311 (22%)

Query: 64  ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEF-------YCER--WGL 114
           +T LPP +  +IL+ LD   L   + VS     LA D   W           CE+  WGL
Sbjct: 198 VTALPPEISFKILSYLDTASLCSAAQVSHSWRALADDDVVWHRMCEQHIDRKCEKCGWGL 257

Query: 115 PIAS--------------------APLGAGFSDDKSWKEL-----------------IDV 137
           P+                      AP        + WK +                   +
Sbjct: 258 PMLDRKRLKDTKRQVQLRAAGKEIAPNQRPQQQHRPWKAVYMDRFKVGTNWKYGRCTTTI 317

Query: 138 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLL 197
             GHT  V+ +       +L T  YD+ +++W +E G  I + +    TIR +  D   L
Sbjct: 318 FRGHTNGVMCLQF--DDNILATGSYDATIKIWDIETGKEIRTLRGHESTIRCLQFDDTKL 375

Query: 198 VAGGTDGFIHC--WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSW 255
           ++G  D  I    WR+ E +      +G            H+G +  L  D T + SGS 
Sbjct: 376 ISGSLDRTIKVWNWRSGECIS---TYTG------------HQGGVLCLHFDSTTLASGSK 420

Query: 256 DMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTSGSD---VYIWDTNSGCLLTVV 311
           D T+++W+    K  ++LR H+DWV  +     +    S SD   V IWD ++G  +   
Sbjct: 421 DNTIKIWN-FHDKSTRILRGHADWVNSVKLDTASRTVFSASDDLTVRIWDLDTGKCIHSY 479

Query: 312 NGAHVGNTKSL 322
            G HVG  + +
Sbjct: 480 AG-HVGQVQQV 489

Component of the SCF(sconB) E3 ubiquitin ligase complex involved in the regulation of sulfur metabolite repression, probably by mediating the inactivation or degradation of the metR transcription factor.

Trichophyton verrucosum (strain HKI 0517) (taxid: 663202)

>sp|Q9VZF4|FBXW7_DROME F-box/WD repeat-containing protein 7 OS=Drosophila melanogaster GN=ago PE=1 SV=1

 Score = 70.1 bits (170), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 88/213 (41%), Gaps = 17/213 (7%)

Query: 135  IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADK 194
            +  L GHT  V  + +  S   + +   D+ +R+W +E G  +         +R V  D 
Sbjct: 1068 VHTLQGHTSTVRCMHLHGSK--VVSGSRDATLRVWDIEQGSCLHVLVGHLAAVRCVQYDG 1125

Query: 195  KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS 254
            KL+V+G  D  +  W               E+Q     L  H   + SL  D   + SGS
Sbjct: 1126 KLIVSGAYDYMVKIWHP-------------ERQECLHTLQGHTNRVYSLQFDGLHVVSGS 1172

Query: 255  WDMTVRVWDRALLKCLKVLR-HSDWVYGLA-PHDTTVASTSGSDVYIWDTNSGCLLTVVN 312
             D ++RVWD     C   L  H     G+    +  V+  + S V +WD  +G  L  ++
Sbjct: 1173 LDTSIRVWDVETGNCKHTLMGHQSLTSGMELRQNILVSGNADSTVKVWDITTGQCLQTLS 1232

Query: 313  GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 345
            G +  ++          F+ T  +DG + ++++
Sbjct: 1233 GPNKHHSAVTCLQFNSRFVVTSSDDGTVKLWDV 1265

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins (By similarity). Involved in the degradation of cyclin E and dm/Myc. Required for endocycles, but not mitosis in follicle cell epithelium.

Drosophila melanogaster (taxid: 7227)

>sp|Q6FT96|MDV1_CANGA Mitochondrial division protein 1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=MDV1 PE=3 SV=1

 Score = 69.3 bits (168), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 102/449 (22%), Positives = 168/449 (37%), Gaps = 86/449 (19%)

Query: 12  SKDLANSVEDSL-QSQIESELNNLNFEIEATKSTLESKQLPCNDVLSNLHRSTITDLPPA 70
           S D +N  +    Q++  S LNN    I+AT+ T              L R    D+   
Sbjct: 296 SADFSNDTQIEFDQAKSLSGLNNPESMIDATRPTA-------------LERKNSIDIVET 342

Query: 71  LISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCE------RWGLPIASAPLGAG 124
            ++EI    D  +  I             +H+A   F+ +      R   P       +G
Sbjct: 343 SLNEIRTSFDGSKQSIEG---------KDNHNALNGFFEDASNKKSRKAQPTVQKYYNSG 393

Query: 125 FSDDKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGY-DSIVRMWHLEDGFSIASSKPL 183
                  K+L  +   H +A+  +        L T+GY D IV++W       I + +  
Sbjct: 394 -------KKLSTIPKAHDDAITCLDFDPHFSTLCTAGYMDHIVKLWDYTKKRQIGAMEGH 446

Query: 184 GCTIRAVAADKK--LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPIT 241
             TI  +  DK   ++  G  D  +  W A +V+    + + SE  +T   L  H   ++
Sbjct: 447 VATISCMQVDKNYNMVATGSKDATVKLWNANDVIGRYEEGNNSEALHT---LDAHLDEVS 503

Query: 242 SLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWD 301
           SL +D   + + S D T+R WD    KC++V             D    S S        
Sbjct: 504 SLYIDGANLMTASQDKTIRRWDLYSGKCIQVF------------DVNFPSLSAYKSSFMK 551

Query: 302 TNSGCL-LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW 360
           +N   + L  VN   +G+ +S   +     L TG +DG I ++    D     V+ V   
Sbjct: 552 SNEDSMILKTVNTPIIGSIQSFDAA-----LATGTKDGLIRLW----DMRTGEVVRVLEG 602

Query: 361 IPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH 420
             H   + SL F+   ++S + DG + L D+R             ++ +I  E P     
Sbjct: 603 --HMDAITSLKFDATTIISGSLDGTIRLWDLR----------SNNLTDIISYEKP----- 645

Query: 421 GFECNLLSVDIGADRIVCGGEEGIVRIWN 449
                + S+D  A  IV    E    I++
Sbjct: 646 -----ISSLDFDAKHIVVASNEHNTHIYD 669

Involved in mitochondrial fission. Has a partially redundant function to CAF4 in acting as an adapter protein required to form mitochondrial fission complexes. Formation of these complexes is required to promote constriction and fission of the mitochondrial compartment at a late step in mitochondrial division.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	520
255561238	541	F-box and wd40 domain protein, putative	0.992	0.953	0.710	0.0
224102909	543	predicted protein [Populus trichocarpa]	0.998	0.955	0.702	0.0
356553682	570	PREDICTED: F-box/WD-40 repeat-containing	0.986	0.9	0.649	0.0
225435995	592	PREDICTED: F-box/WD-40 repeat-containing	0.95	0.834	0.687	0.0
356501332	570	PREDICTED: F-box/WD-40 repeat-containing	0.988	0.901	0.645	0.0
449514919	553	PREDICTED: F-box/WD-40 repeat-containing	0.994	0.934	0.654	0.0
357493575	575	F-box/WD-40 repeat-containing protein [M	0.988	0.893	0.602	0.0
449463887	599	PREDICTED: F-box/WD-40 repeat-containing	0.934	0.811	0.681	0.0
18420385	539	F-box protein 2 [Arabidopsis thaliana] g	0.990	0.955	0.628	0.0
297812291	530	predicted protein [Arabidopsis lyrata su	0.957	0.939	0.647	0.0

>gi|255561238|ref|XP_002521630.1| F-box and wd40 domain protein, putative [Ricinus communis] gi|223539142|gb|EEF40737.1| F-box and wd40 domain protein, putative [Ricinus communis]

 Score =  756 bits (1951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/545 (71%), Positives = 433/545 (79%), Gaps = 29/545 (5%)

Query: 1   MAFECQRVTRVSKDLANSVED----SLQSQIESELNNLNFEIEATKSTLESKQLPCNDVL 56
           MAFECQ  T  SK+  NS E+    +   +I   +   +F+ +       SK    N+VL
Sbjct: 1   MAFECQGRTEESKNY-NSEENFNPKAKSLEIPKPILGCHFK-DGILIRDSSKNFHSNEVL 58

Query: 57  SNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPI 116
            N  RS ITDLPPALISEILNCLDPKELGIVSCVS I +RLAS++  W+E YCERWGLP+
Sbjct: 59  PNFRRS-ITDLPPALISEILNCLDPKELGIVSCVSTIFNRLASENQVWQEVYCERWGLPL 117

Query: 117 ASAPLGAGFSDDKSWKEL----------------IDVLYGHTEAVLTVFVLASAKLLFTS 160
             AP G G SD+KSWKEL                IDVLYGHTEAV TVF+LASAKL+FTS
Sbjct: 118 VPAPSGVGISDEKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVRTVFLLASAKLVFTS 177

Query: 161 GYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD 220
           GYDS+VRMW +EDG SIASS+PLGCTIRAVAAD KLLVAGGTDGFI  WRAVE LP LF+
Sbjct: 178 GYDSVVRMWDMEDGLSIASSRPLGCTIRAVAADTKLLVAGGTDGFIQGWRAVEGLPCLFN 237

Query: 221 ISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVY 280
           + GS++ N +FRLWEHEGPITSLALDL RIYSGSWDMTVR+WDR+LLKCLKVLRHSDWV+
Sbjct: 238 LKGSQELNVEFRLWEHEGPITSLALDLLRIYSGSWDMTVRIWDRSLLKCLKVLRHSDWVW 297

Query: 281 GLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI 340
           GL PHDTTVASTSGSDVY+WDT+SG LL V+N AHVGNT SLARSHTGDFLFTGGEDGAI
Sbjct: 298 GLVPHDTTVASTSGSDVYVWDTHSGTLLAVINRAHVGNTYSLARSHTGDFLFTGGEDGAI 357

Query: 341 HMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRP 400
           HM+EII      NV  +ATWIPH+GPV SLAFEFPWLVSA+ DGKLSLIDVRKLLR  R 
Sbjct: 358 HMFEIIGHSRMVNVFKIATWIPHSGPVYSLAFEFPWLVSASSDGKLSLIDVRKLLRICRR 417

Query: 401 TSGKRVSRV-----IEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE 455
           ++ K  SR+       VEPPQRMLHGF  NL SVDIGADRIVCGGEEG+VR+WNFSQA E
Sbjct: 418 STEKNASRINIVECKSVEPPQRMLHGFGPNLFSVDIGADRIVCGGEEGVVRMWNFSQALE 477

Query: 456 IERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMS 515
           IERRARALRGIRLENRMRRRKLQTEM SKGGR DQCSVAAKKN M+G++ +VWH+KR +S
Sbjct: 478 IERRARALRGIRLENRMRRRKLQTEM-SKGGRNDQCSVAAKKNSMHGDKNTVWHSKRAVS 536

Query: 516 GKLKA 520
            KLKA
Sbjct: 537 SKLKA 541

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102909|ref|XP_002312850.1| predicted protein [Populus trichocarpa] gi|222849258|gb|EEE86805.1| predicted protein [Populus trichocarpa]

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/544 (70%), Positives = 433/544 (79%), Gaps = 25/544 (4%)

Query: 1   MAFECQRVTRVSKDLANSVEDSLQSQIESELNNLNFEIEATKS---TLESKQLPCNDVLS 57
           MAFECQ+ T VSK LA  VE S  +    E++    +    K    +L SKQL CNDVL 
Sbjct: 1   MAFECQKSTEVSKSLAICVEKSNSNTEHLEISKSPLDCYPKKGILSSLSSKQLSCNDVLL 60

Query: 58  NLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIA 117
           N  RS ITDLPPALISEIL+CLDP+ELGIVSCVS +L+ LA+++  WKE Y ERWGLPI 
Sbjct: 61  NCRRS-ITDLPPALISEILSCLDPQELGIVSCVSRVLNSLATENSVWKEVYGERWGLPIV 119

Query: 118 SAPLGAGFSDDKSWKEL----------------IDVLYGHTEAVLTVFVLASAKLLFTSG 161
            APLGAG S++KSWKEL                ID L+GHTEAV TV +LASAKL+FTSG
Sbjct: 120 PAPLGAGVSNEKSWKELFVEREYRSKIFLSRYSIDTLHGHTEAVRTVSLLASAKLIFTSG 179

Query: 162 YDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDI 221
           YD IVRMW +EDG  IASS+PLGCTIRAVAAD KLLVAGGTDGFI  WRAVE L HLFD+
Sbjct: 180 YDMIVRMWDMEDGLYIASSRPLGCTIRAVAADTKLLVAGGTDGFIQGWRAVEGLKHLFDL 239

Query: 222 SGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYG 281
            GSE  NT+FR+WEHEGPITSLALD TRIYSGSWDMTVR+WDR+ L+C+K+LRH DWV+ 
Sbjct: 240 KGSEVPNTEFRIWEHEGPITSLALDPTRIYSGSWDMTVRIWDRSSLECIKILRHGDWVWS 299

Query: 282 LAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIH 341
           L PHDTTVASTSGSDVY+WDTNSG LLTV++ AHVGNT SLARSHT DF+FTGGEDGA+H
Sbjct: 300 LVPHDTTVASTSGSDVYVWDTNSGTLLTVIHSAHVGNTYSLARSHTEDFIFTGGEDGAMH 359

Query: 342 MYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPT 401
           M+EI     EANV  VATW+PH+GPV SLAFEFPWLVSA+ DG+LSL+DVRKLLR+ R +
Sbjct: 360 MFEITGPKPEANVFKVATWMPHSGPVYSLAFEFPWLVSASSDGRLSLVDVRKLLRTNRRS 419

Query: 402 SGKRVSRVIE-----VEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEI 456
             K VSRV +     VEPPQRMLHGF  NL SVD+GADRIVCGGEEG+VRIWNFS+A E 
Sbjct: 420 LRKNVSRVTDKDRNNVEPPQRMLHGFGPNLFSVDVGADRIVCGGEEGVVRIWNFSKALER 479

Query: 457 ERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSG 516
           ER ARA+RGIRLENRMRRR+LQ EMSSKGGRTDQCSVAAKKNPM+ ++  VW NK GMSG
Sbjct: 480 ERTARAMRGIRLENRMRRRRLQIEMSSKGGRTDQCSVAAKKNPMHVDKSGVWRNKHGMSG 539

Query: 517 KLKA 520
           KLKA
Sbjct: 540 KLKA 543

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553682|ref|XP_003545182.1| PREDICTED: F-box/WD-40 repeat-containing protein At5g21040-like [Glycine max]

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/577 (64%), Positives = 430/577 (74%), Gaps = 64/577 (11%)

Query: 1   MAFECQRVTRVSKDLANSVEDSLQSQIESELN---------------------------- 32
           MAFEC   T VS+ LA+ V +     +ES L                             
Sbjct: 1   MAFECPNGTEVSQSLAHFVANPGIGIVESNLQLCPKSFTEGIATSKFVPDTKPESGKGVK 60

Query: 33  -------NLNFEIEATKSTLESKQLPCNDVLSNLHRSTITDLPPALISEILNCLDPKELG 85
                  N    I+A  S L    +P  DV+ N   S ITDLPPALISEILNCLDPK+LG
Sbjct: 61  LKGASKINSKKGIKAPVSALNQSSIP-GDVVFNCGLS-ITDLPPALISEILNCLDPKDLG 118

Query: 86  IVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGF-SDDKSWKEL---------- 134
           +VSCVSPIL R+AS+HHAWK+FYCERWGLP AS  +G+G   DDKSW+EL          
Sbjct: 119 VVSCVSPILQRVASEHHAWKQFYCERWGLPAASLAVGSGVVDDDKSWRELFVEREFRSKT 178

Query: 135 ------IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR 188
                 IDVLYGHTEAV T+F+LASAKL+FTSGYDS+VRMW +E+G SIASS+PLGCTIR
Sbjct: 179 FMGQYSIDVLYGHTEAVRTIFLLASAKLIFTSGYDSVVRMWDMENGLSIASSRPLGCTIR 238

Query: 189 AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLT 248
           AVAAD+KLLVAGGTDGFIHCWRAVE LPH F+   ++ QNT+ RLW HEGPITSLALDLT
Sbjct: 239 AVAADRKLLVAGGTDGFIHCWRAVEDLPHSFEFRATQNQNTEVRLWGHEGPITSLALDLT 298

Query: 249 RIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLL 308
           RIYSGSWD TVRVWDR  +KC  VLRHSDWV+ L PHDTTVASTSGSDVY+WDT+SG L+
Sbjct: 299 RIYSGSWDTTVRVWDRHSMKCTAVLRHSDWVWALVPHDTTVASTSGSDVYVWDTDSGTLV 358

Query: 309 TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN 368
           T+V+ AHVGNT +LARSHTGDFLFTGGEDGAIHMYEI+ND  E+    VA W+PH+  V 
Sbjct: 359 TIVHNAHVGNTYALARSHTGDFLFTGGEDGAIHMYEIVNDGYESKAWHVAVWVPHSAAVY 418

Query: 369 SLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE-----VEPPQRMLHGFE 423
           SLAFEFPWLVSA+ DGKL+LIDVRKLL+  +   GKRVS+V       VEPPQRMLHGF+
Sbjct: 419 SLAFEFPWLVSASSDGKLALIDVRKLLKISKRALGKRVSKVKHLGGDIVEPPQRMLHGFK 478

Query: 424 CNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSS 483
            NL SVDIGA+RIVCGGEEG+VRIWNF++A EIERRARALRGIRL+NRMRRRKLQTE+S+
Sbjct: 479 SNLFSVDIGAERIVCGGEEGVVRIWNFTEALEIERRARALRGIRLDNRMRRRKLQTELSN 538

Query: 484 KGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSGKLKA 520
           K GR+DQCSVAAKKN +      +W  KRGMSGKLKA
Sbjct: 539 KSGRSDQCSVAAKKNAVT----CIW-PKRGMSGKLKA 570

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435995|ref|XP_002269919.1| PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Vitis vinifera]

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/521 (68%), Positives = 420/521 (80%), Gaps = 27/521 (5%)

Query: 21  DSLQSQIESELNNLNFEIEATKSTLESKQLPCNDVLSNLHRSTITDLPPALISEILNCLD 80
           DS  + +  +  N   EIE       +     ND  S  +R  ITDLP ALISEILNCLD
Sbjct: 78  DSDHNTLIRDSGNSQSEIEIGIQKPSTSNPKVNDT-SGHYRRLITDLPSALISEILNCLD 136

Query: 81  PKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKEL------ 134
           PKELG+VSCVS +L+RLAS+H  WK+FYCERWG P+ S     GFSD+KSW+EL      
Sbjct: 137 PKELGVVSCVSTVLNRLASEHSVWKDFYCERWGAPVVS-----GFSDEKSWRELFVEREF 191

Query: 135 ----------IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG 184
                     IDVLYGHTEAV  VF+LASAKL+FTSGYDSIVRMW +E+G SIA S+PLG
Sbjct: 192 RSKTFRGRFSIDVLYGHTEAVRAVFLLASAKLIFTSGYDSIVRMWDMEEGLSIACSRPLG 251

Query: 185 CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA 244
           CTIRAVAADKKLL+AGG+DGFIHCWRAVE L  LFD+ GS+  +T+FR+WEHEGP+T LA
Sbjct: 252 CTIRAVAADKKLLLAGGSDGFIHCWRAVEGLSCLFDLVGSQNLSTEFRIWEHEGPVTCLA 311

Query: 245 LDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNS 304
           LD+ RIYSGSWDMTVR+WDR+  K +KVLRH+DWV+GL P DTTVASTSGSDVY+WD +S
Sbjct: 312 LDIKRIYSGSWDMTVRIWDRSSFKVVKVLRHTDWVWGLVPRDTTVASTSGSDVYVWDADS 371

Query: 305 GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT 364
           G LLT+++ AHVGN  +LARSHTGDFLFTGGEDGAIHM+E+++DC E NVL V+TWIPH+
Sbjct: 372 GTLLTIISNAHVGNAYALARSHTGDFLFTGGEDGAIHMFEVVSDCMERNVLEVSTWIPHS 431

Query: 365 GPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRV-----IEVEPPQRML 419
           GPV+SLAFEFPWLVSA+ DG++SLIDVRKLL++ +P+ GK VS+V       VEPPQRML
Sbjct: 432 GPVHSLAFEFPWLVSASADGRMSLIDVRKLLQTCKPSLGKNVSKVRHRDHKSVEPPQRML 491

Query: 420 HGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQT 479
           HGF CNL SVDIGADRIVCGGEEG+VRIWNFSQA E E+RARALRGIRLENRMRRR+LQ 
Sbjct: 492 HGFGCNLFSVDIGADRIVCGGEEGVVRIWNFSQALEAEQRARALRGIRLENRMRRRRLQI 551

Query: 480 EMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSGKLKA 520
           E++SKG RTDQCSVAA KNP+NG+R  VWHNKRGMSG++KA
Sbjct: 552 ELTSKGSRTDQCSVAASKNPINGDRSGVWHNKRGMSGRMKA 592

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501332|ref|XP_003519479.1| PREDICTED: F-box/WD-40 repeat-containing protein At5g21040-like [Glycine max]

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/576 (64%), Positives = 430/576 (74%), Gaps = 62/576 (10%)

Query: 1   MAFECQRVTRVSKDLANSVEDSLQSQIE-SELNNLNFE---------------------- 37
           MAFEC   T VS++LA+ V +     +E ++L+  +F                       
Sbjct: 1   MAFECLNNTEVSQNLAHFVANPGIGIVEPNQLSPKSFSEGVATSKFVPDTKSESGKGVKL 60

Query: 38  -----------IEATKSTLESKQLPCNDVLSNLHRSTITDLPPALISEILNCLDPKELGI 86
                      I+A  S L    +P  DV+ N   S ITDLPPALISEILNCLDPK+LG+
Sbjct: 61  KGASTINSKKGIKAPVSALNQLSIP-GDVIFNCGLS-ITDLPPALISEILNCLDPKDLGV 118

Query: 87  VSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGF-SDDKSWKEL----------- 134
           VSCVS I  R+AS+H AWK+FYCERWGLP AS  + +G   DDKSW+EL           
Sbjct: 119 VSCVSTIFQRVASEHGAWKQFYCERWGLPTASLAVDSGVVDDDKSWRELFVEREFRTKTF 178

Query: 135 -----IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRA 189
                IDVLYGHTEAV TVF+LASAKL+FTSGYDS+VRMW +E+G SIASS+PLGCTIRA
Sbjct: 179 MGRYSIDVLYGHTEAVRTVFLLASAKLIFTSGYDSVVRMWDMENGLSIASSRPLGCTIRA 238

Query: 190 VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTR 249
           VAAD+KLLVAGGTDGFIHCWRAVE L HLF++  ++ QNT+ RLW HEGPITSLALDLTR
Sbjct: 239 VAADRKLLVAGGTDGFIHCWRAVEDLLHLFELRATQNQNTEVRLWGHEGPITSLALDLTR 298

Query: 250 IYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLT 309
           IYSGSWD TVRVWDR  +KC  VLRHSDWV+ L PH+TTVASTSGSDVY+WDTNSG L+T
Sbjct: 299 IYSGSWDTTVRVWDRLSMKCTAVLRHSDWVWALVPHNTTVASTSGSDVYVWDTNSGALVT 358

Query: 310 VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNS 369
           +V+ AHVGNT +LARSHTGDFLFTGGEDGAIHMYEI+ND  E+    VA WIPH+  V S
Sbjct: 359 IVHNAHVGNTYALARSHTGDFLFTGGEDGAIHMYEIVNDGYESKTWHVAAWIPHSAAVYS 418

Query: 370 LAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE-----VEPPQRMLHGFEC 424
           LAFEFPWLVSA+ DGKL+LIDVRKLLR  +   GKRVS+V       VEPPQRMLHGF+ 
Sbjct: 419 LAFEFPWLVSASSDGKLALIDVRKLLRISKRALGKRVSKVKHLGGDIVEPPQRMLHGFKS 478

Query: 425 NLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSK 484
           NL SVDIGA+RIV GGEEG+VRIWNF++A EIERRARALRGIRLE+RMRRRKLQTE+S+K
Sbjct: 479 NLFSVDIGAERIVSGGEEGVVRIWNFTEALEIERRARALRGIRLEHRMRRRKLQTELSNK 538

Query: 485 GGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSGKLKA 520
            GR+DQCSVAAKKN +      +W  KRGMSGKLKA
Sbjct: 539 SGRSDQCSVAAKKNSVT----CIWPTKRGMSGKLKA 570

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449514919|ref|XP_004164515.1| PREDICTED: F-box/WD-40 repeat-containing protein At5g21040-like [Cucumis sativus]

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/556 (65%), Positives = 422/556 (75%), Gaps = 39/556 (7%)

Query: 1   MAFECQRVTRVSKDLANSVEDSLQSQIESELNNLNFEIEATKSTLESKQLPCNDVLSNLH 60
           MAFECQ+   +  D     ++  + Q      + +F +EA    +ES +      L++ H
Sbjct: 1   MAFECQKSAGIYTDSRVIGKNYCEKQTA---GSSSFNLEAESEGIESDKSEIITSLTSKH 57

Query: 61  ---------RSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCER 111
                      +ITDLPPA+ISEILNCLDPKELGIVSCVS +LH +AS+HH WKEFY ER
Sbjct: 58  LLSKNAPVGGRSITDLPPAIISEILNCLDPKELGIVSCVSTVLHSIASEHHVWKEFYSER 117

Query: 112 WGLPI--ASAPL-GAGFSDDKSWKEL----------------IDVLYGHTEAVLTVFVLA 152
           WGLP+   SAP+   G SD++SWK+L                ++VL+GHTEAV TVFVLA
Sbjct: 118 WGLPVPAQSAPVVPNGLSDERSWKDLFVEREFRSKTFMGRYTMEVLHGHTEAVRTVFVLA 177

Query: 153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAV 212
           SAKL+FTSGYDSIVR+W LE+G SIASS+ LGCTIRA+AAD KLLVAGGTDGFIHCW+AV
Sbjct: 178 SAKLIFTSGYDSIVRIWELEEGLSIASSRSLGCTIRALAADTKLLVAGGTDGFIHCWKAV 237

Query: 213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKV 272
           E L +LFD+ G    N +FRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDR   +CL +
Sbjct: 238 EGLSYLFDVKGPLNHNIEFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRFSHRCLNI 297

Query: 273 LRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLF 332
           LRH DWV+GL PHDTTVASTSGSDVY+WDTNSG L TV++ AHVG   +LARSHTGDFLF
Sbjct: 298 LRHGDWVWGLVPHDTTVASTSGSDVYVWDTNSGELATVIHEAHVGYAYALARSHTGDFLF 357

Query: 333 TGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVR 392
           TGGEDGAIHM++I N   + +  LV +WIPH+GPV SLAFEFPWLVSA+ DGKLSLIDVR
Sbjct: 358 TGGEDGAIHMFDITNRHVDTSAQLVGSWIPHSGPVYSLAFEFPWLVSASSDGKLSLIDVR 417

Query: 393 KLLRSGRPTSGKRVSR-----VIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRI 447
            LLR+ + T  KR SR      I VEPPQRMLHGF  NL  VDIG DRIVCGGEEG+VRI
Sbjct: 418 PLLRTKKRTLWKRDSRGQHVQSISVEPPQRMLHGFGSNLFGVDIGMDRIVCGGEEGVVRI 477

Query: 448 WNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSK--GGRTDQCSVAAKKNPMN-GNR 504
           WNF+QA E ERRARALRGIRLENRMRRR+LQ EM++K  G R+DQCS AAKK PMN G+R
Sbjct: 478 WNFTQALEAERRARALRGIRLENRMRRRRLQIEMNTKSGGARSDQCSFAAKKTPMNGGDR 537

Query: 505 RSVWHNKRGMSGKLKA 520
            SVWHNKRG+SGKLKA
Sbjct: 538 VSVWHNKRGVSGKLKA 553

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493575|ref|XP_003617076.1| F-box/WD-40 repeat-containing protein [Medicago truncatula] gi|355518411|gb|AET00035.1| F-box/WD-40 repeat-containing protein [Medicago truncatula]

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/581 (60%), Positives = 419/581 (72%), Gaps = 67/581 (11%)

Query: 1   MAFECQRVTRVSKDL------------------------------ANSVEDSLQSQI--- 27
           MAF+C +  +VS++L                               N+  +S + +I   
Sbjct: 1   MAFDCPQSIKVSQNLVENPGISIDIVELNPKPNSKAISISFPDFVTNTKSESGKGEIFKG 60

Query: 28  ESELNNLNFEIEATKSTLESKQLPCNDVLSNLHRSTITDLPPALISEILNCLDPKELGIV 87
           +S+LN+      A+   L    +P + V+ N    +ITDLPP LISEILNCLDPKELGIV
Sbjct: 61  KSKLNSKKGIKAASAGALNQSSVPGDVVIGNCR--SITDLPPVLISEILNCLDPKELGIV 118

Query: 88  SCVSPILHRLASDHHAWKEFYCERWGLPI-------ASAPLGAGFSDDKSWKEL------ 134
           SCVS IL  LAS+HHAWKEFYCERWGLP        + + +G    D+KSWK++      
Sbjct: 119 SCVSLILRSLASEHHAWKEFYCERWGLPAVPEAVLDSDSGVGDSVKDEKSWKDIFVERDY 178

Query: 135 ----------IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG 184
                     +DVLYGHTEAV TVF+LAS KL+FTSGYD++VRMW++E G S+ASSKPLG
Sbjct: 179 RSKTFMGRYSMDVLYGHTEAVRTVFLLASTKLIFTSGYDTVVRMWNMESGLSVASSKPLG 238

Query: 185 CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA 244
           CTIRAVAAD +LLVAGGTDGFIHCWRAVE LPHLF++  S++   + RLW H+GP+TSLA
Sbjct: 239 CTIRAVAADTRLLVAGGTDGFIHCWRAVEGLPHLFELRNSQQNKNEVRLWGHDGPVTSLA 298

Query: 245 LDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNS 304
           LDLTRIYSGSWD TVRVWDR  +KC  VLRHSDWV+GL PHDTTV STSGS+VY+WDTNS
Sbjct: 299 LDLTRIYSGSWDTTVRVWDRHSMKCTVVLRHSDWVWGLVPHDTTVVSTSGSNVYVWDTNS 358

Query: 305 GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT 364
           G L TVV  AHVGNT +LARSHTGDF+FTGGEDG+IHMYEI++       L VATW PH+
Sbjct: 359 GNLATVVLNAHVGNTYALARSHTGDFIFTGGEDGSIHMYEIVDGSYVTEALHVATWDPHS 418

Query: 365 GPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRV-----IEVEPPQRML 419
           GPV SLAFEFPWLVSA+ DGKL+LIDVRKLLR  +   GKR ++      + VEPPQRML
Sbjct: 419 GPVYSLAFEFPWLVSASSDGKLALIDVRKLLRRSKRAIGKRATKAKYSGEVNVEPPQRML 478

Query: 420 HGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQT 479
           HGF+ NL SV IGADRIVCGGEEG+VRIWNF++A EIE R RALRG+RLENRMRRRK QT
Sbjct: 479 HGFKSNLFSVGIGADRIVCGGEEGVVRIWNFTEALEIESRVRALRGMRLENRMRRRKNQT 538

Query: 480 EMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSGKLKA 520
           E++SKGG++DQCS AAKK+ +      +W +KRGM GK KA
Sbjct: 539 ELNSKGGKSDQCSAAAKKSSVT----CIWPSKRGMGGKTKA 575

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463887|ref|XP_004149662.1| PREDICTED: F-box/WD-40 repeat-containing protein At5g21040-like [Cucumis sativus]

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/522 (68%), Positives = 408/522 (78%), Gaps = 36/522 (6%)

Query: 35  NFEIEATKSTLESKQLPCNDVLSNLH---------RSTITDLPPALISEILNCLDPKELG 85
           +F +EA    +ES +      L++ H           +ITDLPPA+ISEILNCLDPKELG
Sbjct: 78  SFNLEAESEGIESDKSEIITSLTSKHLLSKNAPVGGRSITDLPPAIISEILNCLDPKELG 137

Query: 86  IVSCVSPILHRLASDHHAWKEFYCERWGLPIA--SAPL-GAGFSDDKSWKEL-------- 134
           IVSCVS +LH +AS+HH WKEFY ERWGLP+   SAP+   G SD++SWK+L        
Sbjct: 138 IVSCVSTVLHSIASEHHVWKEFYSERWGLPVPAQSAPVVPNGLSDERSWKDLFVEREFRS 197

Query: 135 --------IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT 186
                   ++VL+GHTEAV TVFVLASAKL+FTSGYDSIVR+W LE+G SIASS+ LGCT
Sbjct: 198 KTFMGRYTMEVLHGHTEAVRTVFVLASAKLIFTSGYDSIVRIWELEEGLSIASSRSLGCT 257

Query: 187 IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD 246
           IRA+AAD KLLVAGGTDGFIHCW+AVE L +LFD+ G    N +FRLWEHEGPITSLALD
Sbjct: 258 IRALAADTKLLVAGGTDGFIHCWKAVEGLSYLFDVKGPLNHNIEFRLWEHEGPITSLALD 317

Query: 247 LTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGC 306
           LTRIYSGSWDMTVRVWDR   +CL +LRH DWV+GL PHDTTVASTSGSDVY+WDTNSG 
Sbjct: 318 LTRIYSGSWDMTVRVWDRFSHRCLNILRHGDWVWGLVPHDTTVASTSGSDVYVWDTNSGE 377

Query: 307 LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP 366
           L TV++ AHVG   +LARSHTGDFLFTGGEDGAIHM++I N   + +  LV +WIPH+GP
Sbjct: 378 LATVIHEAHVGYAYALARSHTGDFLFTGGEDGAIHMFDITNRHVDTSAQLVGSWIPHSGP 437

Query: 367 VNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSR-----VIEVEPPQRMLHG 421
           V SLAFEFPWLVSA+ DGKLSLIDVR LLR+ + T  KR SR      I VEPPQRMLHG
Sbjct: 438 VYSLAFEFPWLVSASSDGKLSLIDVRPLLRTKKRTLWKRDSRGQHVQSISVEPPQRMLHG 497

Query: 422 FECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEM 481
           F  NL  VDIG DRIVCGGEEG+VRIWNF+QA E ERRARALRGIRLENRMRRR+LQ EM
Sbjct: 498 FGSNLFGVDIGMDRIVCGGEEGVVRIWNFTQALEAERRARALRGIRLENRMRRRRLQIEM 557

Query: 482 SSK--GGRTDQCSVAAKKNPMN-GNRRSVWHNKRGMSGKLKA 520
           ++K  G R+DQCS AAKK PMN G+R SVWHNKRG+SGKLKA
Sbjct: 558 NTKSGGARSDQCSFAAKKTPMNGGDRVSVWHNKRGVSGKLKA 599

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18420385|ref|NP_568408.1| F-box protein 2 [Arabidopsis thaliana] gi|334187807|ref|NP_001190352.1| F-box protein 2 [Arabidopsis thaliana] gi|75332042|sp|Q94AD8.1|FBW3_ARATH RecName: Full=F-box/WD-40 repeat-containing protein At5g21040 gi|15081723|gb|AAK82516.1| T10F18_70/T10F18_70 [Arabidopsis thaliana] gi|27363380|gb|AAO11609.1| At5g21040/T10F18_70 [Arabidopsis thaliana] gi|332005539|gb|AED92922.1| F-box protein 2 [Arabidopsis thaliana] gi|332005540|gb|AED92923.1| F-box protein 2 [Arabidopsis thaliana]

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/544 (62%), Positives = 413/544 (75%), Gaps = 29/544 (5%)

Query: 1   MAFECQRVTRVSKDLAN-----SVEDSLQSQIESELNNLNFEIEATKSTL---ESKQLPC 52
           M FECQ     + D  +     + +  + +    E+ N+    +  K TL    SKQL  
Sbjct: 1   MEFECQERLEAANDQRSESGLLNTDLRIGNDGSVEIPNVKLCCQKKKGTLVPSGSKQLLS 60

Query: 53  NDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERW 112
           +  LS    +TI DLP ALISEILNCLDPKELG+VSCVS  LHRLAS+HHAWKEFY ERW
Sbjct: 61  DKDLS----TTIIDLPQALISEILNCLDPKELGLVSCVSTYLHRLASEHHAWKEFYRERW 116

Query: 113 GLPIASAPLGAGFSDDKSWKEL----------------IDVLYGHTEAVLTVFVLASAKL 156
           GLP+      +G SD++SWK+L                ID LYGHTEAV TVF+LASAKL
Sbjct: 117 GLPVVFGAASSGLSDERSWKDLFVEREFRSRTFLGRYSIDTLYGHTEAVRTVFLLASAKL 176

Query: 157 LFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLP 216
           +FTSGYDSIVRMW +E+G SIA+SKPLGCTIRA+AAD KLLVAGGTDGFIHCW++++ L 
Sbjct: 177 VFTSGYDSIVRMWDMEEGLSIAASKPLGCTIRALAADTKLLVAGGTDGFIHCWKSLDGLR 236

Query: 217 HLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHS 276
           +LFD++G +K+ T+FRLW HEGPITSLALD+T I+SGSWDM+VR+WDR+ +KC+K LRHS
Sbjct: 237 NLFDLTGFQKEKTEFRLWGHEGPITSLALDMTSIFSGSWDMSVRIWDRSSMKCVKTLRHS 296

Query: 277 DWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE 336
           DWV+GLAPH+TT+ASTSGSDVYIWD +S   L ++  AH G T SLARSHTGDFLFTGGE
Sbjct: 297 DWVWGLAPHETTLASTSGSDVYIWDVSSETPLAIIPDAHEGTTYSLARSHTGDFLFTGGE 356

Query: 337 DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLR 396
           DG I M+EI    +E +V+L++ W+PHT PV SL+FEFPWLVSA+GDGKL+LIDVRKLL+
Sbjct: 357 DGGIKMFEIRRYGSETSVVLISQWMPHTSPVYSLSFEFPWLVSASGDGKLALIDVRKLLK 416

Query: 397 SGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEI 456
           + R    KR+S    VEPPQRMLHGF  NL SVD+G DRIVCGGEEG VRIWNF+QA EI
Sbjct: 417 TNRCAYSKRISSST-VEPPQRMLHGFGSNLFSVDVGYDRIVCGGEEGTVRIWNFTQALEI 475

Query: 457 ERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSG 516
           ERR RAL+G+R ENRMRRR++Q EM++K GR DQCS+AA KNP+NG R   WH+KR  SG
Sbjct: 476 ERRTRALKGMRHENRMRRRRMQMEMNAKNGRPDQCSIAAHKNPINGERNRAWHSKRRASG 535

Query: 517 KLKA 520
           K KA
Sbjct: 536 KAKA 539

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812291|ref|XP_002874029.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297319866|gb|EFH50288.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/525 (64%), Positives = 411/525 (78%), Gaps = 27/525 (5%)

Query: 18  SVEDSLQSQIES---ELNNLNFEIEATKSTL---ESKQLPCNDVLSNLHRSTITDLPPAL 71
           S  D+L  +IE+   E+ ++    +  K TL    SKQL  +  LS    +TI DLP AL
Sbjct: 11  SESDTLNLRIENGSVEIPSVKLSCQQKKGTLVPSGSKQLLSDKDLS----TTIIDLPQAL 66

Query: 72  ISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSW 131
           ISEILNCLDPKELG+VSCVS  LH+LAS+HHAWKEFY ERWGLP+      +G SD++SW
Sbjct: 67  ISEILNCLDPKELGLVSCVSTCLHKLASEHHAWKEFYRERWGLPVVFGATSSGLSDERSW 126

Query: 132 KEL----------------IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF 175
           KEL                ID LYGHTEAV  VF+LASAKL+FTSGYDSIVRMW +E+G 
Sbjct: 127 KELFAEREFRSRNFLGRYSIDTLYGHTEAVRIVFLLASAKLVFTSGYDSIVRMWDMEEGL 186

Query: 176 SIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE 235
           SIA+SKPLGCTIRA+AAD KLLVAGGTDGFIHCW++++ L +LFD++G +K+ T FRLW 
Sbjct: 187 SIAASKPLGCTIRALAADTKLLVAGGTDGFIHCWKSLDGLRNLFDLTGFQKEKTDFRLWG 246

Query: 236 HEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGS 295
           HEGPITSLALD+T I+SGSWDM+VR+WDR+ +KC+K LRHSDWV+GLAPH+T++ASTSGS
Sbjct: 247 HEGPITSLALDMTSIFSGSWDMSVRIWDRSSMKCVKTLRHSDWVWGLAPHETSLASTSGS 306

Query: 296 DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL 355
           DVYIWD +    LT++  AH G T SLARSHTGDFLFTGGEDG I M+EI    +E +V+
Sbjct: 307 DVYIWDIDRETPLTIIRDAHEGTTYSLARSHTGDFLFTGGEDGGIKMFEIRRYGSETSVV 366

Query: 356 LVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPP 415
           L++ W+PHT PV SL+FEFPWLVSA+GDGKL+LIDVRKLL++ R    +R+S    VEPP
Sbjct: 367 LISQWMPHTSPVYSLSFEFPWLVSASGDGKLALIDVRKLLKTNRRAYSRRISSST-VEPP 425

Query: 416 QRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRR 475
           QRMLHGF  NL SVD+G DRIVCGGEEGIVRIWNF+QA EIERRARAL+G+RLENRMRRR
Sbjct: 426 QRMLHGFGSNLFSVDVGCDRIVCGGEEGIVRIWNFTQALEIERRARALKGMRLENRMRRR 485

Query: 476 KLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSGKLKA 520
           ++Q EM++K GR DQCS+AA KNP+NG+R   WH+KR  SGK KA
Sbjct: 486 RMQMEMNAKSGRPDQCSIAAHKNPINGDRNRAWHSKRRASGKAKA 530

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	520
TAIR|locus:2147077	539	FBX2 "AT5G21040" [Arabidopsis	0.934	0.901	0.658	9e-180
ASPGD|ASPL0000008575	618	AN6217 [Emericella nidulans (t	0.363	0.305	0.278	3e-12
CGD|CAL0004039	735	orf19.3301 [Candida albicans (	0.351	0.248	0.264	7.6e-12
ZFIN|ZDB-GENE-030131-6305	527	fbxw11a "F-box and WD-40 domai	0.509	0.502	0.234	7.9e-12
ZFIN|ZDB-GENE-040426-2903	527	fbxw11b "F-box and WD-40 domai	0.509	0.502	0.234	1.6e-11
RGD|1309121	493	Fbxw11 "F-box and WD repeat do	0.476	0.503	0.238	4.9e-11
ZFIN|ZDB-GENE-090313-79	760	fbxw7 "F-box and WD repeat dom	0.380	0.260	0.255	5.8e-11
UNIPROTKB|F1P5E8	515	FBXW11 "Uncharacterized protei	0.509	0.514	0.234	6e-11
UNIPROTKB|F1M373	527	Fbxw11 "Protein Fbxw11" [Rattu	0.476	0.470	0.238	6.1e-11
MGI|MGI:2144023	542	Fbxw11 "F-box and WD-40 domain	0.476	0.457	0.238	6.7e-11

TAIR|locus:2147077 FBX2 "AT5G21040" [Arabidopsis thaliana (taxid:3702)]

 Score = 1745 (619.3 bits), Expect = 9.0e-180, P = 9.0e-180
 Identities = 336/510 (65%), Positives = 401/510 (78%)

Query:    30 ELNNLNFEIEATKSTLE---SKQLPCNDVLSNLHRSTITDLPPALISEILNCLDPKELGI 86
             E+ N+    +  K TL    SKQL  +  LS    +TI DLP ALISEILNCLDPKELG+
Sbjct:    35 EIPNVKLCCQKKKGTLVPSGSKQLLSDKDLS----TTIIDLPQALISEILNCLDPKELGL 90

Query:    87 VSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKEL------------ 134
             VSCVS  LHRLAS+HHAWKEFY ERWGLP+      +G SD++SWK+L            
Sbjct:    91 VSCVSTYLHRLASEHHAWKEFYRERWGLPVVFGAASSGLSDERSWKDLFVEREFRSRTFL 150

Query:   135 ----IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV 190
                 ID LYGHTEAV TVF+LASAKL+FTSGYDSIVRMW +E+G SIA+SKPLGCTIRA+
Sbjct:   151 GRYSIDTLYGHTEAVRTVFLLASAKLVFTSGYDSIVRMWDMEEGLSIAASKPLGCTIRAL 210

Query:   191 AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRI 250
             AAD KLLVAGGTDGFIHCW++++ L +LFD++G +K+ T+FRLW HEGPITSLALD+T I
Sbjct:   211 AADTKLLVAGGTDGFIHCWKSLDGLRNLFDLTGFQKEKTEFRLWGHEGPITSLALDMTSI 270

Query:   251 YSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTV 310
             +SGSWDM+VR+WDR+ +KC+K LRHSDWV+GLAPH+TT+ASTSGSDVYIWD +S   L +
Sbjct:   271 FSGSWDMSVRIWDRSSMKCVKTLRHSDWVWGLAPHETTLASTSGSDVYIWDVSSETPLAI 330

Query:   311 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL 370
             +  AH G T SLARSHTGDFLFTGGEDG I M+EI    +E +V+L++ W+PHT PV SL
Sbjct:   331 IPDAHEGTTYSLARSHTGDFLFTGGEDGGIKMFEIRRYGSETSVVLISQWMPHTSPVYSL 390

Query:   371 AFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD 430
             +FEFPWLVSA+GDGKL+LIDVRKLL++ R    KR+S    VEPPQRMLHGF  NL SVD
Sbjct:   391 SFEFPWLVSASGDGKLALIDVRKLLKTNRCAYSKRISSST-VEPPQRMLHGFGSNLFSVD 449

Query:   431 IGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQ 490
             +G DRIVCGGEEG VRIWNF+QA EIERR RAL+G+R ENRMRRR++Q EM++K GR DQ
Sbjct:   450 VGYDRIVCGGEEGTVRIWNFTQALEIERRTRALKGMRHENRMRRRRMQMEMNAKNGRPDQ 509

Query:   491 CSVAAKKNPMNGNRRSVWHNKRGMSGKLKA 520
             CS+AA KNP+NG R   WH+KR  SGK KA
Sbjct:   510 CSIAAHKNPINGERNRAWHSKRRASGKAKA 539

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

ASPGD|ASPL0000008575 AN6217 [Emericella nidulans (taxid:162425)]

 Score = 174 (66.3 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
 Identities = 59/212 (27%), Positives = 98/212 (46%)

Query:   138 LYGHTEAVLTVFVLAS-AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-ADKK 195
             L GH   V+ V+ +     +L + G D  VR+W++  G SI   +    T+R +  +DK 
Sbjct:   288 LEGH---VMGVWAMVPWDNILVSGGCDREVRVWNMATGESIYLLRGHTSTVRCLKMSDKN 344

Query:   196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSW 255
               ++G  D  +  W          D+     ++    L  H+  +  LA+    + SGS+
Sbjct:   345 TAISGSRDTTLRIW----------DLRTGTCRSV---LVGHQASVRCLAVHGDIVVSGSY 391

Query:   256 DMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNG 313
             D T RVW  +  + L+ L  H   +Y +A     +A+ S  + V IWD N+G    ++ G
Sbjct:   392 DTTARVWSISEGRFLRALSGHFSQIYAIAFDGRRIATGSLDTSVRIWDPNTGQCHAILQG 451

Query:   314 AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 345
              H      L  S  GD L TGG DG++ ++ +
Sbjct:   452 -HTSLVGQLQMS--GDTLVTGGSDGSVRVWSL 480

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0004039 orf19.3301 [Candida albicans (taxid:5476)]

 Score = 179 (68.1 bits), Expect = 7.6e-12, Sum P(3) = 7.6e-12
 Identities = 55/208 (26%), Positives = 91/208 (43%)

Query:   125 FSDDKSWKE---LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK 181
             F  +K+W++    I    GH++ V  +    + K L T  YD+ +++W ++ G  + +  
Sbjct:   363 FKLEKNWRKGTHTIKTFTGHSDGVTCLQF--NRKYLMTGSYDTTIKIWKIDSGECVKTLT 420

Query:   182 PLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPIT 241
                  +RA+  D + L++GG D  I  W       H      +      +R   HE  + 
Sbjct:   421 GHTKGVRALVFDNQKLISGGLDSTIKVWNY-----HTGQCIAT------YR--GHEDAVV 467

Query:   242 SLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSD---VY 298
             S+      I SGS D TVRVW      C  +  H+DWV  +  H  +    S SD   + 
Sbjct:   468 SVDFTNKSIVSGSADHTVRVWHVDSRTCYTLRGHTDWVNHVKIHSASNTIFSASDDTTIR 527

Query:   299 IWDTNSG-CLLT---VVNGAHVGNTKSL 322
             +WD NS  C+     + N  H+G  + +
Sbjct:   528 MWDMNSNECIKVFGGMENNGHIGQVQCI 555

GO:0043224 "nuclear SCF ubiquitin ligase complex" evidence=IEA

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0000114 "regulation of transcription involved in G1 phase of mitotic cell cycle" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEA

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IEA

GO:0046685 "response to arsenic-containing substance" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

ZFIN|ZDB-GENE-030131-6305 fbxw11a "F-box and WD-40 domain protein 11a" [Danio rerio (taxid:7955)]

 Score = 171 (65.3 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
 Identities = 67/286 (23%), Positives = 128/286 (44%)

Query:   128 DKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTI 187
             DK   E + VL GHT +VL +      +++ T   DS VR+W       ++S + L   I
Sbjct:   251 DKQSLECLKVLTGHTGSVLCLQY--DERVIVTGSSDSTVRVW------DVSSGEVLNTLI 302

Query:   188 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL 247
                 A   L    G    + C +   +   ++D++ +   + +  L  H   +  +  D 
Sbjct:   303 HHNEAVLHLRFCNGL--MVTCSKDRSIA--VWDMASATDISLRRVLVGHRAAVNVVDFDD 358

Query:   248 TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS-TSGSDVYIWDTNSG 305
               I S S D T++VW  +  + ++ L  H   +  L   D  V S +S + + +WD   G
Sbjct:   359 KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG 418

Query:   306 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI---INDCTEANVLLVATWIP 362
               L V+ G H    + +   +    + +G  DG I ++++   ++    A+ L + T + 
Sbjct:   419 ACLRVLEG-HEELVRCIRFDNKR--IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE 475

Query:   363 HTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSR 408
             H+G V  L F+   ++S++ D  + + D   +  +G+ + G+  SR
Sbjct:   476 HSGRVFRLQFDEFQIISSSHDDTILIWDFLNVSSNGQ-SDGRSPSR 520

GO:0046983 "protein dimerization activity" evidence=IEA

ZFIN|ZDB-GENE-040426-2903 fbxw11b "F-box and WD-40 domain protein 11b" [Danio rerio (taxid:7955)]

 Score = 171 (65.3 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
 Identities = 67/286 (23%), Positives = 126/286 (44%)

Query:   128 DKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTI 187
             DK   E + +L GHT +VL +      +++ T   DS VR+W +  G      + L   I
Sbjct:   251 DKQTLECLKILTGHTGSVLCLQY--DERVIVTGSSDSTVRVWDVNSG------EVLNTLI 302

Query:   188 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL 247
                 A   L    G    + C +   +   ++D++     + +  L  H   +  +  D 
Sbjct:   303 HHNEAVLHLRFCNGL--MVTCSKDRSIA--VWDMASPTDISLRRVLVGHRAAVNVVDFDD 358

Query:   248 TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS-TSGSDVYIWDTNSG 305
               I S S D T++VW  +  + ++ L  H   +  L   D  V S +S + + +WD   G
Sbjct:   359 KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG 418

Query:   306 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI---INDCTEANVLLVATWIP 362
               L V+ G H    + +   +    + +G  DG I ++++   ++    A+ L + T + 
Sbjct:   419 ACLRVLEG-HEELVRCIRFDNKR--IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE 475

Query:   363 HTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSR 408
             H+G V  L F+   ++S++ D  + + D   +  +G+ T G+  SR
Sbjct:   476 HSGRVFRLQFDEFQIISSSHDDTILIWDFLNVSTNGQ-TEGRSPSR 520

GO:0046983 "protein dimerization activity" evidence=IEA

RGD|1309121 Fbxw11 "F-box and WD repeat domain containing 11" [Rattus norvegicus (taxid:10116)]

 Score = 163 (62.4 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
 Identities = 64/268 (23%), Positives = 119/268 (44%)

Query:   128 DKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTI 187
             DKS  E + VL GHT +VL +      +++ T   DS VR+W +  G      + L   I
Sbjct:   217 DKSSLECLKVLTGHTGSVLCLQY--DERVIVTGSSDSTVRVWDVNTG------EVLNTLI 268

Query:   188 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL 247
                 A   L  + G    + C +   +   ++D++ +     +  L  H   +  +  D 
Sbjct:   269 HHNEAVLHLRFSNGL--MVTCSKDRSIA--VWDMASATDITLRRVLVGHRAAVNVVDFDD 324

Query:   248 TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS-TSGSDVYIWDTNSG 305
               I S S D T++VW  +  + ++ L  H   +  L   D  V S +S + + +WD   G
Sbjct:   325 KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG 384

Query:   306 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI---INDCTEANVLLVATWIP 362
               L V+ G H    + +   +    + +G  DG I ++++   ++    A+ L + T + 
Sbjct:   385 ACLRVLEG-HEELVRCIRFDNKR--IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE 441

Query:   363 HTGPVNSLAFEFPWLVSAAGDGKLSLID 390
             H+G V  L F+   ++S++ D  + + D
Sbjct:   442 HSGRVFRLQFDEFQIISSSHDDTILIWD 469

GO:0000209 "protein polyubiquitination" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006470 "protein dephosphorylation" evidence=ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISO

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0031648 "protein destabilization" evidence=ISO

GO:0042347 "negative regulation of NF-kappaB import into nucleus" evidence=ISO

GO:0042753 "positive regulation of circadian rhythm" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0045862 "positive regulation of proteolysis" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0046983 "protein dimerization activity" evidence=IEA

ZFIN|ZDB-GENE-090313-79 fbxw7 "F-box and WD repeat domain containing 7" [Danio rerio (taxid:7955)]

 Score = 186 (70.5 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 55/215 (25%), Positives = 89/215 (41%)

Query:   133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAA 192
             E I  LYGHT  V  + +    K + +   D+ +R+W +E G  +         +R V  
Sbjct:   505 ECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 562

Query:   193 DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYS 252
             D + +V+G  D  +  W      P        E +     L  H   + SL  D   + S
Sbjct:   563 DGRRVVSGAYDFMVKVWD-----P--------ETETCLHTLQGHTNRVYSLQFDGIHVVS 609

Query:   253 GSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS-TSGSDVYIWDTNSGCLLTV 310
             GS D ++RVWD     C+  L  H     G+   D  + S  + S V IWD  +G  L  
Sbjct:   610 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQT 669

Query:   311 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 345
             + G H   +         +F+ T  +DG + ++++
Sbjct:   670 LQGPHKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 704

GO:0045746 "negative regulation of Notch signaling pathway" evidence=IMP

GO:0001525 "angiogenesis" evidence=IMP

UNIPROTKB|F1P5E8 FBXW11 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 159 (61.0 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
 Identities = 67/286 (23%), Positives = 124/286 (43%)

Query:   128 DKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTI 187
             DK+  E + VL GHT +VL +      +++ T   DS VR+W +  G      + L   I
Sbjct:   239 DKTSLECLKVLTGHTGSVLCLQY--DERVIVTGSSDSTVRVWDVNTG------EVLNTLI 290

Query:   188 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL 247
                 A   L  + G    + C +   +   ++D++       +  L  H   +  +  D 
Sbjct:   291 HHNEAVLHLRFSNGL--MVTCSKDRSIA--VWDMASPTDITLRRVLVGHRAAVNVVDFDD 346

Query:   248 TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS-TSGSDVYIWDTNSG 305
               I S S D T++VW  +  + ++ L  H   +  L   D  V S +S + + +WD   G
Sbjct:   347 KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG 406

Query:   306 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI---INDCTEANVLLVATWIP 362
               L V+ G H    + +   +    + +G  DG I ++++   ++    A+ L + T + 
Sbjct:   407 ACLRVLEG-HEELVRCIRFDNKR--IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE 463

Query:   363 HTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSR 408
             H+G V  L F+   ++S++ D  + + D   +  S  P   +  SR
Sbjct:   464 HSGRVFRLQFDEFQIISSSHDDTILIWDFLNVPPSA-PNETRSPSR 508

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|F1M373 Fbxw11 "Protein Fbxw11" [Rattus norvegicus (taxid:10116)]

 Score = 163 (62.4 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
 Identities = 64/268 (23%), Positives = 119/268 (44%)

Query:   128 DKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTI 187
             DKS  E + VL GHT +VL +      +++ T   DS VR+W +  G      + L   I
Sbjct:   251 DKSSLECLKVLTGHTGSVLCLQY--DERVIVTGSSDSTVRVWDVNTG------EVLNTLI 302

Query:   188 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL 247
                 A   L  + G    + C +   +   ++D++ +     +  L  H   +  +  D 
Sbjct:   303 HHNEAVLHLRFSNGL--MVTCSKDRSIA--VWDMASATDITLRRVLVGHRAAVNVVDFDD 358

Query:   248 TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS-TSGSDVYIWDTNSG 305
               I S S D T++VW  +  + ++ L  H   +  L   D  V S +S + + +WD   G
Sbjct:   359 KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG 418

Query:   306 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI---INDCTEANVLLVATWIP 362
               L V+ G H    + +   +    + +G  DG I ++++   ++    A+ L + T + 
Sbjct:   419 ACLRVLEG-HEELVRCIRFDNKR--IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE 475

Query:   363 HTGPVNSLAFEFPWLVSAAGDGKLSLID 390
             H+G V  L F+   ++S++ D  + + D
Sbjct:   476 HSGRVFRLQFDEFQIISSSHDDTILIWD 503

GO:0046983 "protein dimerization activity" evidence=IEA

MGI|MGI:2144023 Fbxw11 "F-box and WD-40 domain protein 11" [Mus musculus (taxid:10090)]

 Score = 163 (62.4 bits), Expect = 6.7e-11, Sum P(2) = 6.7e-11
 Identities = 64/268 (23%), Positives = 119/268 (44%)

Query:   128 DKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTI 187
             DKS  E + VL GHT +VL +      +++ T   DS VR+W +  G      + L   I
Sbjct:   266 DKSSLECLKVLTGHTGSVLCLQY--DERVIVTGSSDSTVRVWDVNTG------EVLNTLI 317

Query:   188 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL 247
                 A   L  + G    + C +   +   ++D++ +     +  L  H   +  +  D 
Sbjct:   318 HHNEAVLHLRFSNGL--MVTCSKDRSIA--VWDMASATDITLRRVLVGHRAAVNVVDFDD 373

Query:   248 TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS-TSGSDVYIWDTNSG 305
               I S S D T++VW  +  + ++ L  H   +  L   D  V S +S + + +WD   G
Sbjct:   374 KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG 433

Query:   306 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI---INDCTEANVLLVATWIP 362
               L V+ G H    + +   +    + +G  DG I ++++   ++    A+ L + T + 
Sbjct:   434 ACLRVLEG-HEELVRCIRFDNKR--IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE 490

Query:   363 HTGPVNSLAFEFPWLVSAAGDGKLSLID 390
             H+G V  L F+   ++S++ D  + + D
Sbjct:   491 HSGRVFRLQFDEFQIISSSHDDTILIWD 518

GO:0000209 "protein polyubiquitination" evidence=ISO;IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006470 "protein dephosphorylation" evidence=IDA

GO:0007049 "cell cycle" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISO;IDA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO;IMP

GO:0031648 "protein destabilization" evidence=ISO

GO:0042347 "negative regulation of NF-kappaB import into nucleus" evidence=IMP

GO:0042753 "positive regulation of circadian rhythm" evidence=IMP

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0045862 "positive regulation of proteolysis" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048511 "rhythmic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94AD8	FBW3_ARATH	No assigned EC number	0.6286	0.9903	0.9554	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	520
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-35
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-26
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-24
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-21
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-19
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-09
pfam12937	47	pfam12937, F-box-like, F-box-like	3e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-06
pfam00646	48	pfam00646, F-box, F-box domain	1e-05
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	6e-05
smart00320	40	smart00320, WD40, WD40 repeats	3e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-04
pfam07106	169	pfam07106, TBPIP, Tat binding protein 1(TBP-1)-int	0.001
smart00320	40	smart00320, WD40, WD40 repeats	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  134 bits (339), Expect = 1e-35
 Identities = 90/326 (27%), Positives = 135/326 (41%), Gaps = 47/326 (14%)

Query: 134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-- 191
           L   L GHT  V  V      KLL T   D  +++W LE G  + + K     +R VA  
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 192 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTR 249
           AD   L +G +D  I  W          D+   E   T      H   ++S+A   D   
Sbjct: 61  ADGTYLASGSSDKTIRLW----------DLETGECVRTLT---GHTSYVSSVAFSPDGRI 107

Query: 250 IYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPH-DTTVASTSGSD--VYIWDTNSG 305
           + S S D T++VWD    KCL  LR H+DWV  +A   D T  ++S  D  + +WD  +G
Sbjct: 108 LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG 167

Query: 306 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG 365
             +  + G H G   S+A S  G+ L +   DG I ++++      +    + T   H  
Sbjct: 168 KCVATLTG-HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL------STGKCLGTLRGHEN 220

Query: 366 PVNSLAFEFP--WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE 423
            VNS+AF      L S + DG + + D+R               + +         H   
Sbjct: 221 GVNSVAFSPDGYLLASGSEDGTIRVWDLRT----------GECVQTLS-------GHTNS 263

Query: 424 CNLLSVDIGADRIVCGGEEGIVRIWN 449
              L+      R+  G  +G +RIW+
Sbjct: 264 VTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  107 bits (269), Expect = 4e-26
 Identities = 77/278 (27%), Positives = 117/278 (42%), Gaps = 37/278 (13%)

Query: 126 SDDKSWK-------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA 178
           S D + K       EL+  L GHT  V  V   A    L +   D  +R+W LE G  + 
Sbjct: 28  SGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR 87

Query: 179 SSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH 236
           +       + +VA   D ++L +   D  I  W  VE    L  + G            H
Sbjct: 88  TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD-VETGKCLTTLRG------------H 134

Query: 237 EGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTT---VA 290
              + S+A   D T + S S D T+++WD    KC+  L  H+  V  +A        ++
Sbjct: 135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLS 194

Query: 291 STSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT 350
           S+S   + +WD ++G  L  + G H     S+A S  G  L +G EDG I ++++     
Sbjct: 195 SSSDGTIKLWDLSTGKCLGTLRG-HENGVNSVAFSPDGYLLASGSEDGTIRVWDL----- 248

Query: 351 EANVLLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKL 386
                 V T   HT  V SLA+  +   L S + DG +
Sbjct: 249 -RTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTI 285

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  102 bits (255), Expect = 3e-24
 Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 22/220 (10%)

Query: 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAA 192
           E +  L GHT  V +V      ++L +S  D  +++W +E G  + + +     + +VA 
Sbjct: 84  ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF 143

Query: 193 --DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLT 248
             D   + +   DG I  W          D+   +   T   L  H G + S+A   D  
Sbjct: 144 SPDGTFVASSSQDGTIKLW----------DLRTGKCVAT---LTGHTGEVNSVAFSPDGE 190

Query: 249 RIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTSGSD---VYIWDTNS 304
           ++ S S D T+++WD +  KCL  LR H + V  +A         SGS+   + +WD  +
Sbjct: 191 KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250

Query: 305 GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE 344
           G  +  ++G H  +  SLA S  G  L +G  DG I +++
Sbjct: 251 GECVQTLSG-HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 92.4 bits (230), Expect = 8e-21
 Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 36/231 (15%)

Query: 236 HEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVA 290
           H G +T +A   D   + +GS D T++VWD    + L+ L+ H+  V  +A     T +A
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLA 67

Query: 291 STSG-SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC 349
           S S    + +WD  +G  +  + G H     S+A S  G  L +   D  I ++++    
Sbjct: 68  SGSSDKTIRLWDLETGECVRTLTG-HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG- 125

Query: 350 TEANVLLVATWIPHTGPVNSLAF-EFPWLVSAAG-DGKLSLIDVRKLLRSGRPTSGKRVS 407
                  + T   HT  VNS+AF      V+++  DG + L D+R         +GK V 
Sbjct: 126 -----KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR---------TGKCV- 170

Query: 408 RVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEI 456
                      L G    + SV    D  +++    +G +++W+ S    +
Sbjct: 171 ---------ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL 212

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 90.1 bits (222), Expect = 3e-19
 Identities = 74/346 (21%), Positives = 129/346 (37%), Gaps = 51/346 (14%)

Query: 129 KSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG------FSIASSKP 182
                   +L GH +++ ++      +LL +   D  +++W L++G              
Sbjct: 52  SLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSS 111

Query: 183 LGCTIRAVAADKKLLVAGG-TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPIT 241
           +     +      +L+A    DG +  W          D+S   K         H   +T
Sbjct: 112 VSKLALSSPDGNSILLASSSLDGTVKLW----------DLSTPGKLIRTLEG--HSESVT 159

Query: 242 SLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTSGS 295
           SLA            S D T+++WD    K L  L  H+D V  LA  P    + ++  S
Sbjct: 160 SLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219

Query: 296 D--VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN 353
           D  + +WD ++G LL      H  +  S   S  G  L +G  DG I ++++ +  +   
Sbjct: 220 DGTIRLWDLSTGKLLRSTLSGHSDSVVSSF-SPDGSLLASGSSDGTIRLWDLRSSSS--- 275

Query: 354 VLLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE 411
             L+ T   H+  V S+AF  +   L S + DG + L D+                    
Sbjct: 276 --LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG---------------KL 318

Query: 412 VEPPQRMLHGFECNLLSVDIGADRIVCGG-EEGIVRIWNFSQAFEI 456
           +       H    + LS       +V GG ++G +R+W+      +
Sbjct: 319 LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL 364

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 43/191 (22%), Positives = 80/191 (41%), Gaps = 34/191 (17%)

Query: 269 CLKVLR-HSDWVYGLA--PHDTTVASTSGSD-VYIWDTNSGCLLTVVNGAHVGNTKSLAR 324
             + L+ H+  V  +A  P    +A+ SG   + +WD  +G LL  + G H G  + +A 
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAA 59

Query: 325 SHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWLVSAAG 382
           S  G +L +G  D  I ++++           V T   HT  V+S+AF  +   L S++ 
Sbjct: 60  SADGTYLASGSSDKTIRLWDLETGE------CVRTLTGHTSYVSSVAFSPDGRILSSSSR 113

Query: 383 DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC--NLLSVDIGADRIVCGG 440
           D  + + DV          +GK ++           L G     N ++       +    
Sbjct: 114 DKTIKVWDVE---------TGKCLTT----------LRGHTDWVNSVAFSPDGTFVASSS 154

Query: 441 EEGIVRIWNFS 451
           ++G +++W+  
Sbjct: 155 QDGTIKLWDLR 165

Length = 289

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 43.6 bits (104), Expect = 3e-06
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 64  ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYC 109
           ++DLP  ++ +I + LDP++L  ++ V      LASD   W+    
Sbjct: 1   LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSLWRRLCL 46

This is an F-box-like family. Length = 47

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 48.2 bits (113), Expect = 7e-06
 Identities = 46/173 (26%), Positives = 66/173 (38%), Gaps = 35/173 (20%)

Query: 127 DDKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-- 184
           D +S   L+  L GH+ +VL+V      KLL +   D  VR+W LE G  ++S    G  
Sbjct: 269 DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHE 328

Query: 185 CTIRAVAA---DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF---------- 231
             + +++       L+  G  DG I  W      P       S   +  F          
Sbjct: 329 GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSG 388

Query: 232 ------RLWE------------HEGPITSLAL--DLTRIYSGSWDMTVRVWDR 264
                 RLW+            H   +TSL    D   + SGS D T+R+WD 
Sbjct: 389 STDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441

Length = 466

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 62  STITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYC 109
            ++ DLP  L+ EIL+ LDPK+L  +S VS     L      WK+   
Sbjct: 1   FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 39.7 bits (94), Expect = 6e-05
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 67  LPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEF 107
           LP  ++ EIL+ LDPK+L  +  VS     L   H  W + 
Sbjct: 1   LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWFKL 41

Length = 41

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 231 FRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWD 263
             L  H GP+TS+A   D   + SGS D T+++WD
Sbjct: 6   KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 236 HEGPITSLAL--DLTRIYSGSWDMTVRVWD 263
           H GP+TS+A   D   + SGS D TVRVWD
Sbjct: 10  HTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|148614 pfam07106, TBPIP, Tat binding protein 1(TBP-1)-interacting protein (TBPIP)

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 8/88 (9%)

Query: 20  EDSLQSQIESELNNLNFEIEATKSTLESKQLPCNDVLSNLHRSTITDLPPALISEILNCL 79
           +D  +   + ELN L+ EIE  +  ++  +  C+ +   L +S  +DL    + E +  L
Sbjct: 63  QDQFELPSDEELNKLDMEIEELREEVQLLKQDCSTLEIEL-KSLTSDLTTEELQEEIQEL 121

Query: 80  DPKELGIVSCVSPILHRLASDHHAWKEF 107
             KE      V  I  +L S    WK  
Sbjct: 122 K-KE------VREIEEKLESLEEGWKPV 142

This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation. Length = 169

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 132 KELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWH 170
            EL+  L GHT  V +V      K L +   D  +++W 
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	520
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.98
KOG0266	456	consensus WD40 repeat-containing protein [General	99.98
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.98
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
PTZ00420	568	coronin; Provisional	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.92
KOG2055	514	consensus WD40 repeat protein [General function pr	99.92
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.92
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.92
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.92
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.91
KOG1539	910	consensus WD repeat protein [General function pred	99.91
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.9
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG2048	691	consensus WD40 repeat protein [General function pr	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.9
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
KOG2096	420	consensus WD40 repeat protein [General function pr	99.89
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.89
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.88
KOG0639	705	consensus Transducin-like enhancer of split protei	99.88
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.88
KOG2048	691	consensus WD40 repeat protein [General function pr	99.88
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.88
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.87
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.87
KOG0267	825	consensus Microtubule severing protein katanin p80	99.87
KOG1274	933	consensus WD40 repeat protein [General function pr	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.86
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.86
KOG1273	405	consensus WD40 repeat protein [General function pr	99.86
KOG4328	498	consensus WD40 protein [Function unknown]	99.86
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.86
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.85
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.84
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.84
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.84
KOG1188	376	consensus WD40 repeat protein [General function pr	99.84
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.83
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.83
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.83
KOG2055	514	consensus WD40 repeat protein [General function pr	99.82
KOG0649	325	consensus WD40 repeat protein [General function pr	99.82
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.82
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.81
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.8
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.8
KOG1334	559	consensus WD40 repeat protein [General function pr	99.8
KOG0649	325	consensus WD40 repeat protein [General function pr	99.8
KOG4328	498	consensus WD40 protein [Function unknown]	99.79
KOG1273	405	consensus WD40 repeat protein [General function pr	99.79
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.79
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.79
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.78
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.77
COG2319	466	FOG: WD40 repeat [General function prediction only	99.77
KOG4227	609	consensus WD40 repeat protein [General function pr	99.77
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.76
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.76
KOG1963	792	consensus WD40 repeat protein [General function pr	99.76
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.75
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.75
COG2319	466	FOG: WD40 repeat [General function prediction only	99.75
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.73
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.73
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.71
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.71
KOG1188	376	consensus WD40 repeat protein [General function pr	99.71
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.71
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.71
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.7
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.7
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.69
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.69
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.67
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.67
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.67
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.66
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.65
KOG1963	792	consensus WD40 repeat protein [General function pr	99.65
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.65
PRK11028	330	6-phosphogluconolactonase; Provisional	99.64
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.64
KOG1310	758	consensus WD40 repeat protein [General function pr	99.62
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.62
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.62
KOG4227	609	consensus WD40 repeat protein [General function pr	99.6
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.58
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.57
PRK01742	429	tolB translocation protein TolB; Provisional	99.56
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.56
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.56
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.55
KOG1310	758	consensus WD40 repeat protein [General function pr	99.55
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.54
PRK11028	330	6-phosphogluconolactonase; Provisional	99.52
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.51
KOG1334	559	consensus WD40 repeat protein [General function pr	99.5
KOG2321	703	consensus WD40 repeat protein [General function pr	99.5
KOG2321	703	consensus WD40 repeat protein [General function pr	99.48
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.45
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.45
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.45
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.44
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.41
KOG2139	445	consensus WD40 repeat protein [General function pr	99.39
PRK03629	429	tolB translocation protein TolB; Provisional	99.38
PRK01742	429	tolB translocation protein TolB; Provisional	99.38
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.35
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.34
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.33
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.32
PRK04922	433	tolB translocation protein TolB; Provisional	99.3
KOG4547	541	consensus WD40 repeat-containing protein [General	99.29
PRK02889	427	tolB translocation protein TolB; Provisional	99.27
KOG2139	445	consensus WD40 repeat protein [General function pr	99.27
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.26
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.25
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.24
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.24
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.24
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	99.22
KOG2315	566	consensus Predicted translation initiation factor	99.22
PRK05137	435	tolB translocation protein TolB; Provisional	99.21
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.2
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.19
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.18
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.17
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.16
PRK03629	429	tolB translocation protein TolB; Provisional	99.16
PRK05137	435	tolB translocation protein TolB; Provisional	99.14
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.14
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.12
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.11
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.1
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.1
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.08
PRK00178	430	tolB translocation protein TolB; Provisional	99.08
PRK04922	433	tolB translocation protein TolB; Provisional	99.07
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.07
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.06
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.06
KOG2315	566	consensus Predicted translation initiation factor	99.05
KOG2314	698	consensus Translation initiation factor 3, subunit	99.05
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.05
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.03
PRK04792	448	tolB translocation protein TolB; Provisional	98.99
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.98
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.97
KOG4547	541	consensus WD40 repeat-containing protein [General	98.95
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.95
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.94
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.93
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.92
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.91
PRK02889	427	tolB translocation protein TolB; Provisional	98.89
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.88
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.87
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.87
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.85
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.82
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.77
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.76
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.76
KOG2314	698	consensus Translation initiation factor 3, subunit	98.75
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.74
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.73
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.73
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.72
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.71
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.7
PRK01029	428	tolB translocation protein TolB; Provisional	98.7
COG4946	668	Uncharacterized protein related to the periplasmic	98.69
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.69
PRK00178	430	tolB translocation protein TolB; Provisional	98.67
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.65
KOG2695	425	consensus WD40 repeat protein [General function pr	98.64
COG4946	668	Uncharacterized protein related to the periplasmic	98.63
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.63
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.6
PRK04792	448	tolB translocation protein TolB; Provisional	98.59
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.59
KOG2695	425	consensus WD40 repeat protein [General function pr	98.59
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.57
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.55
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.54
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.54
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.51
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.51
PRK04043	419	tolB translocation protein TolB; Provisional	98.5
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.5
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.48
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.45
KOG3621	726	consensus WD40 repeat-containing protein [General	98.44
PRK01029	428	tolB translocation protein TolB; Provisional	98.4
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.39
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.37
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.36
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.31
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.28
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.27
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.2
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.18
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.17
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.14
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.11
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.1
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.07
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.07
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.06
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.05
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.04
PRK04043	419	tolB translocation protein TolB; Provisional	97.96
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.95
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.92
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.87
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.87
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.83
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.81
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.8
PRK02888	635	nitrous-oxide reductase; Validated	97.73
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.71
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.71
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.66
PRK02888	635	nitrous-oxide reductase; Validated	97.66
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.65
PHA02713	557	hypothetical protein; Provisional	97.59
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.59
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.57
KOG3621	726	consensus WD40 repeat-containing protein [General	97.57
KOG2997	366	consensus F-box protein FBX9 [General function pre	97.56
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.55
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.55
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.54
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.53
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.52
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.51
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.47
PHA02713	557	hypothetical protein; Provisional	97.46
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.44
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.31
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.28
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.24
COG5276	370	Uncharacterized conserved protein [Function unknow	97.22
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.17
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.17
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.16
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.14
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.11
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.05
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.75
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.71
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.68
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.63
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.63
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.59
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.56
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.56
KOG4341	483	consensus F-box protein containing LRR [General fu	96.56
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.55
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.53
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.51
KOG3926	332	consensus F-box proteins [Amino acid transport and	96.51
COG3391	381	Uncharacterized conserved protein [Function unknow	96.47
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.46
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.44
KOG2444	238	consensus WD40 repeat protein [General function pr	96.36
KOG2395	644	consensus Protein involved in vacuole import and d	96.25
PHA03098	534	kelch-like protein; Provisional	96.16
PRK13616	591	lipoprotein LpqB; Provisional	96.05
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.04
PHA03098	534	kelch-like protein; Provisional	96.02
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.01
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.0
KOG2444	238	consensus WD40 repeat protein [General function pr	95.96
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.93
PHA02790	480	Kelch-like protein; Provisional	95.78
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.74
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.59
PHA02790	480	Kelch-like protein; Provisional	95.58
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.46
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	95.25
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.06
COG5276	370	Uncharacterized conserved protein [Function unknow	94.91
KOG2395	644	consensus Protein involved in vacuole import and d	94.91
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.63
PRK13616	591	lipoprotein LpqB; Provisional	94.45
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.32
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.21
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.17
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.02
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.84
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.25
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	93.24
PF14727	418	PHTB1_N: PTHB1 N-terminus	93.01
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	92.95
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	92.57
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.36
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	92.32
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.2
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.12
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.96
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.95
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.77
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	91.58
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	91.56
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.53
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.39
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	90.95
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	90.94
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	90.93
COG5167	776	VID27 Protein involved in vacuole import and degra	90.04
COG1520	370	FOG: WD40-like repeat [Function unknown]	89.06
PF06881	109	Elongin_A: RNA polymerase II transcription factor	89.02
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	88.96
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	88.94
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	88.75
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.69
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	88.55
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	88.33
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	88.06
PF13013	109	F-box-like_2: F-box-like domain	87.98
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	87.84
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	87.55
COG4590	733	ABC-type uncharacterized transport system, permeas	87.42
PRK10115	686	protease 2; Provisional	87.39
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	86.96
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	86.65
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	86.4
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	86.09
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	85.95
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	85.56
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	85.4
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	85.05
KOG2377	657	consensus Uncharacterized conserved protein [Funct	84.82
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	84.61
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	84.15
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	84.09
COG5167	776	VID27 Protein involved in vacuole import and degra	83.64
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	83.53
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	83.5
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	83.31
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	82.94
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	82.88
COG3391	381	Uncharacterized conserved protein [Function unknow	82.63
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	82.4
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	81.95
PLN02153	341	epithiospecifier protein	81.7
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	81.36
PLN02193	470	nitrile-specifier protein	81.23
KOG2714	465	consensus SETA binding protein SB1 and related pro	81.2
KOG4408	386	consensus Putative Mg2+ and Co2+ transporter CorD	80.81
KOG3616	1636	consensus Selective LIM binding factor [Transcript	80.58
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	80.31

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=5.8e-56  Score=384.17  Aligned_cols=388  Identities=20%  Similarity=0.274  Sum_probs=326.4

Q ss_pred             cceehhhhccccCCccC--CcccccCcccccccCCC----HHHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhhhh
Q 009993           35 NFEIEATKSTLESKQLP--CNDVLSNLHRSTITDLP----PALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFY  108 (520)
Q Consensus        35 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~LP----~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~~~  108 (520)
                      -..+..++++.|..|..  -+.++|++++||++.||    +++...||+|||..+|+.|..||+.|++++++..+||+++
T Consensus        44 vdfv~~ll~~m~hyq~g~v~n~~rpmLqrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLi  123 (499)
T KOG0281|consen   44 VDFVEHLISRMCHYQHGHINNYLKPMLQRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLI  123 (499)
T ss_pred             hhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence            34556777887877777  79999999999999999    9999999999999999999999999999999999999886


Q ss_pred             hhh------c-CC-----CCCC----CCCCC----CCCCcccHHHh-----------------hhhh---ccccccEEEE
Q 009993          109 CER------W-GL-----PIAS----APLGA----GFSDDKSWKEL-----------------IDVL---YGHTEAVLTV  148 (520)
Q Consensus       109 ~~~------~-~~-----~~~~----~~~~~----~~~~~~~W~~~-----------------~~~l---~~h~~~V~~l  148 (520)
                      -+.      | ++     |...    .+...    .......|..+                 ++.+   ....+.|+|+
T Consensus       124 e~~vr~dslWrgl~e~rqw~~~lf~~r~~~~~~~~n~f~~~l~pki~~di~~idsNWr~Gr~~~~rinc~Se~skgVYCl  203 (499)
T KOG0281|consen  124 ERMVRTDSLWRGLSERRQWDQYLFKNRPNDGGFPPNSFYRLLYPKIIQDIETIESNWRCGRHLLQRINCRSENSKGVYCL  203 (499)
T ss_pred             HHhcchHHHHhhhhhccCcchhhccCCCCcCCcCCCcchhhhhHHHHHHHhhhhcchhccceeeeeecCCcccCCceEEE
Confidence            442      1 10     1100    01111    11111233322                 1111   2346789999


Q ss_pred             EEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCcccc
Q 009993          149 FVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQN  228 (520)
Q Consensus       149 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~  228 (520)
                      ++  |...+++|..|.+|+|||..+..++..+.+|++.|.|+..+.+.+++|+.|.+|++||+++++             
T Consensus       204 QY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge-------------  268 (499)
T KOG0281|consen  204 QY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGE-------------  268 (499)
T ss_pred             Ee--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCc-------------
Confidence            99  567899999999999999999999999999999999999999999999999999999999874             


Q ss_pred             ceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEE---Ee-eeccCEEEEeeCCCEEEEEc-CCeEEEEECC
Q 009993          229 TQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLK---VL-RHSDWVYGLAPHDTTVASTS-GSDVYIWDTN  303 (520)
Q Consensus       229 ~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~---~~-~~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~  303 (520)
                      +...+.+|...|..+.|+.++++++|.|.++.+||+.+...+.   .+ .|...|+.+..+.+++++++ |.+|++|++.
T Consensus       269 ~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~s  348 (499)
T KOG0281|consen  269 PLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTS  348 (499)
T ss_pred             hhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEecc
Confidence            5667889999999999999999999999999999998765332   22 28999999999999999999 9999999999


Q ss_pred             CCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCC
Q 009993          304 SGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGD  383 (520)
Q Consensus       304 ~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d  383 (520)
                      +++.++++. +|...|-|+.+  .++++++|+.|.+|++||+..+      .++..+.||..-|.|+.|+...+++|+.|
T Consensus       349 t~efvRtl~-gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G------~cLRvLeGHEeLvRciRFd~krIVSGaYD  419 (499)
T KOG0281|consen  349 TCEFVRTLN-GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG------ACLRVLEGHEELVRCIRFDNKRIVSGAYD  419 (499)
T ss_pred             ceeeehhhh-cccccceehhc--cCeEEEecCCCceEEEEecccc------HHHHHHhchHHhhhheeecCceeeecccc
Confidence            999999997 79999999887  6899999999999999999999      89999999999999999999999999999


Q ss_pred             CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhH
Q 009993          384 GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEI  456 (520)
Q Consensus       384 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~  456 (520)
                      |+|+|||+.....+..+..          ..+...+..|++.|+.+.|+...+++++.|.+|-|||+.++..-
T Consensus       420 GkikvWdl~aaldpra~~~----------~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  420 GKIKVWDLQAALDPRAPAS----------TLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             ceEEEEecccccCCccccc----------chHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCCcc
Confidence            9999999998654432211          23455677899999999999999999999999999999887543

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-49  Score=349.41  Aligned_cols=328  Identities=23%  Similarity=0.356  Sum_probs=280.7

Q ss_pred             ChhhhHHHhhhhhhHHHhhcCcchhhhhhhhhcCCCCCCCCCCCCCCCcccHH----HhhhhhccccccEEEEEEccCCC
Q 009993           80 DPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAK  155 (520)
Q Consensus        80 ~~~~l~~~s~v~~~~~~~~~~~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~  155 (520)
                      .|+...++..|-|.-..+. .|.  ..+.|.+|++....+..++|+...++|+    ....+.+||...|.|++|+|||+
T Consensus        94 qpqavfrvrpvtrCssS~~-GH~--e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk  170 (480)
T KOG0271|consen   94 QPQAVFRVRPVTRCSSSIA-GHG--EAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGK  170 (480)
T ss_pred             ccchhhcccccceeccccC-CCC--CcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcc
Confidence            4566666666666555554 333  3578999994334456678888889999    55778999999999999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCcEE-EEeCCCCceEEEEe-------cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccc
Q 009993          156 LLFTSGYDSIVRMWHLEDGFSI-ASSKPLGCTIRAVA-------ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQ  227 (520)
Q Consensus       156 ~l~sgs~dg~v~vwd~~~~~~~-~~~~~~~~~v~~~~-------~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~  227 (520)
                      .||+|+.||+|++||..+|+++ ..+.+|...|++++       |..++|++++.||.|+|||+..+             
T Consensus       171 ~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~-------------  237 (480)
T KOG0271|consen  171 KIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG-------------  237 (480)
T ss_pred             hhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc-------------
Confidence            9999999999999999998765 56899999999887       56779999999999999998665             


Q ss_pred             cceEEeccCCCCeEEEEEc-CCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEeeC-------------C------
Q 009993          228 NTQFRLWEHEGPITSLALD-LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPH-------------D------  286 (520)
Q Consensus       228 ~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~-------------~------  286 (520)
                      .++..+.+|+.+|+|+.|. .+++++||.|++|++|+...|.+.+.+. |..+|+.++.+             +      
T Consensus       238 ~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~  317 (480)
T KOG0271|consen  238 TCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF  317 (480)
T ss_pred             eEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence            3778899999999999995 5899999999999999999999999987 99999887622             2      


Q ss_pred             -------------------CEEEEEc-CCeEEEEECCCCe-eeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEc
Q 009993          287 -------------------TTVASTS-GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI  345 (520)
Q Consensus       287 -------------------~~l~~~~-d~~i~iwd~~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~  345 (520)
                                         ..+++|+ |.++.+|+....+ ++..+. +|..-|+.+.|+||++++|+++.|..|++||.
T Consensus       318 se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmt-gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g  396 (480)
T KOG0271|consen  318 SEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMT-GHQALVNHVSFSPDGRYIASASFDKSVKLWDG  396 (480)
T ss_pred             HHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhh-chhhheeeEEECCCccEEEEeecccceeeeeC
Confidence                               3499999 7999999987654 555554 79999999999999999999999999999999


Q ss_pred             ccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcc
Q 009993          346 INDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE  423 (520)
Q Consensus       346 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (520)
                      +++      +.+.++.+|-++|+.++|+.  ++|++|+.|.++++||+++                   .....-+.||.
T Consensus       397 ~tG------k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t-------------------kKl~~DLpGh~  451 (480)
T KOG0271|consen  397 RTG------KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT-------------------KKLKQDLPGHA  451 (480)
T ss_pred             CCc------chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeee-------------------eeecccCCCCC
Confidence            999      88999999999999999965  5999999999999999998                   34445578899


Q ss_pred             eeeEEEEecCC--EEEEecCCCeEEEEe
Q 009993          424 CNLLSVDIGAD--RIVCGGEEGIVRIWN  449 (520)
Q Consensus       424 ~~v~~~~~~~~--~l~sg~~Dg~v~iwd  449 (520)
                      ..|++++++++  ++++|+.|..+++|.
T Consensus       452 DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  452 DEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             ceEEEEEecCCCceeecCCCceEEEeec
Confidence            99999887655  999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.6e-48  Score=342.06  Aligned_cols=312  Identities=25%  Similarity=0.343  Sum_probs=275.8

Q ss_pred             hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009993          134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA  211 (520)
Q Consensus       134 ~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~  211 (520)
                      +...+.||.++|.|++|+|+|..|+||+.|.++|+||+.+..+..+.++|...|.|++  |||+.|++|+.||+|++||.
T Consensus       107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp  186 (480)
T KOG0271|consen  107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP  186 (480)
T ss_pred             eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence            3556889999999999999999999999999999999999999999999999998887  99999999999999999999


Q ss_pred             ccCcceeeeccCCccccceEEeccCCCCeEEEEEc-------CCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe
Q 009993          212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD-------LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA  283 (520)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-------~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~  283 (520)
                      +++.            .....+.+|...|++++|.       ..+|++++.||+|+|||+..+.++..+. |..+|+|+.
T Consensus       187 ktg~------------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvr  254 (480)
T KOG0271|consen  187 KTGQ------------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVR  254 (480)
T ss_pred             CCCC------------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEE
Confidence            8884            3456788999999999993       3679999999999999999999999887 999999999


Q ss_pred             eC-CCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEec-----------CCC----------------------
Q 009993          284 PH-DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARS-----------HTG----------------------  328 (520)
Q Consensus       284 ~~-~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s-----------~~~----------------------  328 (520)
                      .. ..++++++ |++|++|+...|.+...+. +|...|+.++.+           |.+                      
T Consensus       255 wGG~gliySgS~DrtIkvw~a~dG~~~r~lk-GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~  333 (480)
T KOG0271|consen  255 WGGEGLIYSGSQDRTIKVWRALDGKLCRELK-GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLK  333 (480)
T ss_pred             EcCCceEEecCCCceEEEEEccchhHHHhhc-ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhc
Confidence            65 67889999 9999999999999999987 799999999876           223                      


Q ss_pred             ---CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCC
Q 009993          329 ---DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSG  403 (520)
Q Consensus       329 ---~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  403 (520)
                         ..+++|++|.++.+|+.....     +++..+.+|..-|+.+.|+|  .++++++-|.+|++||.+++         
T Consensus       334 ~~~erlVSgsDd~tlflW~p~~~k-----kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---------  399 (480)
T KOG0271|consen  334 DSGERLVSGSDDFTLFLWNPFKSK-----KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---------  399 (480)
T ss_pred             cCcceeEEecCCceEEEecccccc-----cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc---------
Confidence               359999999999999987663     57888999999999999988  69999999999999999984         


Q ss_pred             CceeeeeecCCCcccccCcceeeEEEEecCC--EEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeee
Q 009993          404 KRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEM  481 (520)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (520)
                                .....+.||-..|+.++++.+  +|++|+.|.++++|++++.+....+          ..+..++..+.|
T Consensus       400 ----------k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL----------pGh~DEVf~vDw  459 (480)
T KOG0271|consen  400 ----------KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL----------PGHADEVFAVDW  459 (480)
T ss_pred             ----------chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC----------CCCCceEEEEEe
Confidence                      455668999999999999877  9999999999999999987654332          223456899999


Q ss_pred             ccCCCcccccc
Q 009993          482 SSKGGRTDQCS  492 (520)
Q Consensus       482 s~~g~~~~~~s  492 (520)
                      +|||.+.++..
T Consensus       460 spDG~rV~sgg  470 (480)
T KOG0271|consen  460 SPDGQRVASGG  470 (480)
T ss_pred             cCCCceeecCC
Confidence            99999988754

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=6.7e-45  Score=356.45  Aligned_cols=398  Identities=24%  Similarity=0.355  Sum_probs=338.7

Q ss_pred             cccchhhhhhhccccceehhhhccccCCccC--CcccccCcccccccCCCHHHHHHHccCCChhhhHHHhhhhhhHHHhh
Q 009993           21 DSLQSQIESELNNLNFEIEATKSTLESKQLP--CNDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLA   98 (520)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~   98 (520)
                      .....++......+++.+..++..|+..++.  .+.+.+..++||+..||.|+..+||.|||+++|+.+++||+.|+.++
T Consensus        63 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~  142 (537)
T KOG0274|consen   63 NLIAQFSSLSEKEKKLLLDRLLDSSGPSQLSELGNLLEPLGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLL  142 (537)
T ss_pred             heeehhcccchhhhceeeeeeccccCchhhhhhhhhcccccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhh
Confidence            3334455555666777888888888888887  56669999999999999999999999999999999999999999999


Q ss_pred             cCcchhhhhhhhhcCC--CCCCC-CCCCCCCCcccHHHh------------------hhhhcc-ccccEEEEEEccCCCE
Q 009993           99 SDHHAWKEFYCERWGL--PIASA-PLGAGFSDDKSWKEL------------------IDVLYG-HTEAVLTVFVLASAKL  156 (520)
Q Consensus        99 ~~~~lW~~~~~~~~~~--~~~~~-~~~~~~~~~~~W~~~------------------~~~l~~-h~~~V~~l~~~~~~~~  156 (520)
                      .++..|.+.+....+.  |...- .........+.|+..                  ...+.+ |...|.+..|.  +.+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~--~~~  220 (537)
T KOG0274|consen  143 DDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSFYRRRFRLSKNWRKLFRRGYKVLLGTDDHVVLCLQLH--DGF  220 (537)
T ss_pred             hccchhhhhhhhhcccCCcccCcccccccccccchhhhhhhhhhhccccccccccccceeecccCcchhhhheee--cCe
Confidence            9999888755443321  11111 001111223455522                  233444 67788999887  668


Q ss_pred             EEEEeCCCeEEEEECCCCcEEEE-eCCCCceEEEEecC--CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEe
Q 009993          157 LFTSGYDSIVRMWHLEDGFSIAS-SKPLGCTIRAVAAD--KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL  233 (520)
Q Consensus       157 l~sgs~dg~v~vwd~~~~~~~~~-~~~~~~~v~~~~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  233 (520)
                      +++++.|++|++||..++..+.. +.+|...|.++...  +.++++|+.|.++++||..++.             +...+
T Consensus       221 ~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~-------------C~~~l  287 (537)
T KOG0274|consen  221 FKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE-------------CTHSL  287 (537)
T ss_pred             EEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-------------EEEEe
Confidence            99999999999999999999988 99999999999855  8999999999999999988874             78889


Q ss_pred             ccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEe
Q 009993          234 WEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVV  311 (520)
Q Consensus       234 ~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~  311 (520)
                      .+|.+.|.++...+..+++|+.|.+|++|++.++.++..+. |.++|.++..++.++++|+ |++|++||+.+++++..+
T Consensus       288 ~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl  367 (537)
T KOG0274|consen  288 QGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSL  367 (537)
T ss_pred             cCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeee
Confidence            99999999999999999999999999999999999999999 9999999999999999999 999999999999999999


Q ss_pred             ecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeC
Q 009993          312 NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDV  391 (520)
Q Consensus       312 ~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~  391 (520)
                      . +|...|+++.+.+. ..+++|+.|++|++||+++..     .++.++.+|.+.|..+.+..++|++++.|++|++||.
T Consensus       368 ~-gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~-----~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~  440 (537)
T KOG0274|consen  368 S-GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR-----KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDA  440 (537)
T ss_pred             c-CCcceEEEEEecCc-ceEEeeeeccceEeecCCchh-----hhhhhhcCCcccccccccccceeEeccccccEEEeec
Confidence            8 69999999988655 899999999999999999884     5889999999999999999999999999999999999


Q ss_pred             CcccccCCCCCCCceeeeeecCCCcccccC-cceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHH
Q 009993          392 RKLLRSGRPTSGKRVSRVIEVEPPQRMLHG-FECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERR  459 (520)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~  459 (520)
                      .++                   .+.+.+.+ |...+.++......+++++.||++++||++++...+..
T Consensus       441 ~~~-------------------~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  441 EEG-------------------ECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             ccC-------------------ceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchhhhh
Confidence            883                   44455555 66788888887679999999999999999999888765

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.3e-43  Score=313.73  Aligned_cols=272  Identities=22%  Similarity=0.342  Sum_probs=249.8

Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cC--CCEEEEEeCCCcEEEEEcccC
Q 009993          139 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--AD--KKLLVAGGTDGFIHCWRAVEV  214 (520)
Q Consensus       139 ~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~--~~~l~sg~~dg~i~vwd~~~~  214 (520)
                      -|-+.+|..+.|+++++.|+|||.+|.++||+..+...+.++.+|...+.++.  |.  +..+++|+.||++++|++.+.
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e  251 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE  251 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence            46788999999999999999999999999999999999999999999988776  54  668999999999999998664


Q ss_pred             cceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEE
Q 009993          215 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTV  289 (520)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l  289 (520)
                                   .++..+.+|...|..++|  +|++|+|++.|.+-++||++++..+.... |...|.+++  ++|.++
T Consensus       252 -------------~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~  318 (459)
T KOG0272|consen  252 -------------TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLA  318 (459)
T ss_pred             -------------cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCcee
Confidence                         366788899999999999  88999999999999999999998776665 999999988  999999


Q ss_pred             EEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEE
Q 009993          290 ASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN  368 (520)
Q Consensus       290 ~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~  368 (520)
                      ++|+ |..-+|||+++|.++..+. +|..+|.+++|+|+|-.||||+.|++++|||++..      ..+.++.+|..-|+
T Consensus       319 ~tGGlD~~~RvWDlRtgr~im~L~-gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r------~~ly~ipAH~nlVS  391 (459)
T KOG0272|consen  319 ATGGLDSLGRVWDLRTGRCIMFLA-GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR------SELYTIPAHSNLVS  391 (459)
T ss_pred             eccCccchhheeecccCcEEEEec-ccccceeeEeECCCceEEeecCCCCcEEEeeeccc------ccceecccccchhh
Confidence            9999 9999999999999999987 69999999999999999999999999999999998      67999999999999


Q ss_pred             EEEecC---CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEEecCCC
Q 009993          369 SLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEG  443 (520)
Q Consensus       369 ~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg  443 (520)
                      .|.|+|   .+|+|++.|++++||..++                   ..+.+.+.||...|.+++..++  .++|++.|.
T Consensus       392 ~Vk~~p~~g~fL~TasyD~t~kiWs~~~-------------------~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DR  452 (459)
T KOG0272|consen  392 QVKYSPQEGYFLVTASYDNTVKIWSTRT-------------------WSPLKSLAGHEGKVISLDISPDSQAIATSSFDR  452 (459)
T ss_pred             heEecccCCeEEEEcccCcceeeecCCC-------------------cccchhhcCCccceEEEEeccCCceEEEeccCc
Confidence            999986   6999999999999999988                   4566778999999998887655  899999999


Q ss_pred             eEEEEe
Q 009993          444 IVRIWN  449 (520)
Q Consensus       444 ~v~iwd  449 (520)
                      ++++|.
T Consensus       453 T~KLW~  458 (459)
T KOG0272|consen  453 TIKLWR  458 (459)
T ss_pred             eeeecc
Confidence            999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.6e-41  Score=288.36  Aligned_cols=282  Identities=20%  Similarity=0.282  Sum_probs=245.9

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcc
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAV  212 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~  212 (520)
                      .++|+||.+.|+++.|++|.++++++|.||.+.|||.-+...+..++-....|...  +|.+++++.|+.|+...||++.
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls  127 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS  127 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence            48899999999999999999999999999999999999988888777777777654  5999999999999999999987


Q ss_pred             cCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--e-CCC
Q 009993          213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--P-HDT  287 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~-~~~  287 (520)
                      +...       .........+.+|++.+.|..| +.+.|+++|.|.+..+||+++++.+..+. |.+.|.+++  | +++
T Consensus       128 ~~d~-------~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n  200 (343)
T KOG0286|consen  128 TRDA-------EGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN  200 (343)
T ss_pred             cccc-------cccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence            5421       1123455678999999999999 88999999999999999999999999997 999999988  6 899


Q ss_pred             EEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec--CCc
Q 009993          288 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI--PHT  364 (520)
Q Consensus       288 ~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~--~h~  364 (520)
                      .+++|+ |+..++||++.+.+++.|. +|...|+++.|.|+|.-+++|++|++.++||++..      ..+..+.  .-.
T Consensus       201 tFvSg~cD~~aklWD~R~~~c~qtF~-ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD------~~~a~ys~~~~~  273 (343)
T KOG0286|consen  201 TFVSGGCDKSAKLWDVRSGQCVQTFE-GHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD------QELAVYSHDSII  273 (343)
T ss_pred             eEEecccccceeeeeccCcceeEeec-ccccccceEEEccCCCeeeecCCCceeEEEeecCC------cEEeeeccCccc
Confidence            999999 9999999999999999998 79999999999999999999999999999999998      3344443  335


Q ss_pred             CCEEEEEe--cCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEe--cCCEEEEec
Q 009993          365 GPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GADRIVCGG  440 (520)
Q Consensus       365 ~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~  440 (520)
                      .+|++++|  ++++|++|..|.++.+||.-..                   .....+.||...|.++..  +|..++||+
T Consensus       274 ~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-------------------e~vg~L~GHeNRvScl~~s~DG~av~TgS  334 (343)
T KOG0286|consen  274 CGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-------------------ERVGVLAGHENRVSCLGVSPDGMAVATGS  334 (343)
T ss_pred             CCceeEEEcccccEEEeeecCCceeEeecccc-------------------ceEEEeeccCCeeEEEEECCCCcEEEecc
Confidence            68999999  4689999999999999998763                   334556788888777665  555999999


Q ss_pred             CCCeEEEEe
Q 009993          441 EEGIVRIWN  449 (520)
Q Consensus       441 ~Dg~v~iwd  449 (520)
                      +|.++|||.
T Consensus       335 WDs~lriW~  343 (343)
T KOG0286|consen  335 WDSTLRIWA  343 (343)
T ss_pred             hhHheeecC
Confidence            999999994

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.2e-39  Score=270.79  Aligned_cols=277  Identities=20%  Similarity=0.354  Sum_probs=243.1

Q ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEE
Q 009993          155 KLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR  232 (520)
Q Consensus       155 ~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  232 (520)
                      -+|+|+|+|.+||+|...+|.+..+++-....|..+.  |+++.|++|+. ..|++||+.++.           ..++.+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n-----------p~Pv~t   78 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN-----------PNPVAT   78 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCC-----------CCceeE
Confidence            4899999999999999999999999987777776665  89999988876 579999998874           337888


Q ss_pred             eccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCee
Q 009993          233 LWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCL  307 (520)
Q Consensus       233 ~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~  307 (520)
                      +.+|+..|+++.|  +|+.+++||+||+++|||++...+.+.+.+..+|+++.  |+...|++|. +|.|++||+....+
T Consensus        79 ~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c  158 (311)
T KOG0315|consen   79 FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSC  158 (311)
T ss_pred             EeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcc
Confidence            9999999999999  89999999999999999999999999999999999988  7777888888 89999999999877


Q ss_pred             eEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCc
Q 009993          308 LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGK  385 (520)
Q Consensus       308 ~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~  385 (520)
                      ...+.......|.++...|||..++.+...|..++|++-+......+.++..+..|.+.+..+.++|  .+|+++|.|.+
T Consensus       159 ~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt  238 (311)
T KOG0315|consen  159 THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT  238 (311)
T ss_pred             ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce
Confidence            7776655677899999999999999999999999999988877778889999999999999999987  69999999999


Q ss_pred             EEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEEecCCCeEEEEeCCchHhHHHHhh
Q 009993          386 LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRAR  461 (520)
Q Consensus       386 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~~  461 (520)
                      ++||+..+.                  -.....+.+|...++...|+.+  +|+||+.|+.+++|+++.++++++...
T Consensus       239 v~iwn~~~~------------------~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g  298 (311)
T KOG0315|consen  239 VKIWNTDDF------------------FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG  298 (311)
T ss_pred             EEEEecCCc------------------eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCC
Confidence            999999874                  1223456788888888777655  999999999999999999987765433

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=9.3e-41  Score=289.84  Aligned_cols=273  Identities=22%  Similarity=0.348  Sum_probs=240.4

Q ss_pred             hhhhhhcCCCCCCCCCCCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC
Q 009993          106 EFYCERWGLPIASAPLGAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK  181 (520)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~  181 (520)
                      .+||.++.  +....++..+...++|+    .+.++|.||++.|.|+.|  +.+.+++||.|.+|+|||+++|+++.++-
T Consensus       199 gVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tli  274 (499)
T KOG0281|consen  199 GVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLI  274 (499)
T ss_pred             ceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHh
Confidence            34665553  33333444456679998    779999999999999999  57799999999999999999999999999


Q ss_pred             CCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEE
Q 009993          182 PLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRV  261 (520)
Q Consensus       182 ~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~i  261 (520)
                      .|...|..+..++.++++++.|.++.+||+....          .......+.||...|+.+.|+.++++++|.|.+|++
T Consensus       275 hHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps----------~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikv  344 (499)
T KOG0281|consen  275 HHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPT----------DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKV  344 (499)
T ss_pred             hhcceeEEEEEeCCEEEEecCCceeEEEeccCch----------HHHHHHHHhhhhhheeeeccccceEEEecCCceEEE
Confidence            9999999999999999999999999999986542          233455678999999999999999999999999999


Q ss_pred             EECCCCcEEEEee-eccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCe
Q 009993          262 WDRALLKCLKVLR-HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA  339 (520)
Q Consensus       262 wd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~  339 (520)
                      |++.++++++++. |...|.|+...++++++|+ |.+|++||+..|.+++.+. ||..-|.++.|  +.+.+++|+.||+
T Consensus       345 W~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLe-GHEeLvRciRF--d~krIVSGaYDGk  421 (499)
T KOG0281|consen  345 WSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRF--DNKRIVSGAYDGK  421 (499)
T ss_pred             EeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHh-chHHhhhheee--cCceeeeccccce
Confidence            9999999999997 9999999999999999999 9999999999999999997 79999999999  5788999999999


Q ss_pred             EEEEEcccCccc---cceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCccc
Q 009993          340 IHMYEIINDCTE---ANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLL  395 (520)
Q Consensus       340 i~iwd~~~~~~~---~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~  395 (520)
                      |++||+..+..+   ....++.++..|++.|..+.|+...+++++.|.+|-|||+.++.
T Consensus       422 ikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~  480 (499)
T KOG0281|consen  422 IKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGP  480 (499)
T ss_pred             EEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCC
Confidence            999999876443   22246777889999999999999999999999999999998753

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=7.4e-38  Score=264.46  Aligned_cols=285  Identities=21%  Similarity=0.367  Sum_probs=234.2

Q ss_pred             hhhhccccccEEEEEEccC-CCEEEEEeCCCeEEEEECC-----CCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcE
Q 009993          135 IDVLYGHTEAVLTVFVLAS-AKLLFTSGYDSIVRMWHLE-----DGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFI  206 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~-~~~l~sgs~dg~v~vwd~~-----~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i  206 (520)
                      ..+|+||++.|+.++..+. .+.+++++.|.++.+|++.     .|..++.+.+|...|..+.  +++++.++++.|+++
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l   87 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL   87 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence            4578999999999999886 5789999999999999885     4677889999998887654  999999999999999


Q ss_pred             EEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee---eccCEEE
Q 009993          207 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYG  281 (520)
Q Consensus       207 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~  281 (520)
                      ++||+.+++             ....+.+|...|.+++|  |...+++|+.|.+|++||+... +..++.   +.++|.|
T Consensus        88 rlWDl~~g~-------------~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVsc  153 (315)
T KOG0279|consen   88 RLWDLATGE-------------STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSC  153 (315)
T ss_pred             EEEEecCCc-------------EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEE
Confidence            999998863             66788999999999999  6789999999999999998654 444443   3789999


Q ss_pred             Ee--eC--CCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceee
Q 009993          282 LA--PH--DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL  356 (520)
Q Consensus       282 ~~--~~--~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~  356 (520)
                      +.  |+  ..++++++ |++|++||+++.+....+. +|.+.++.++++|||.+.++|+.||.+.+||++.+      +.
T Consensus       154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~------k~  226 (315)
T KOG0279|consen  154 VRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG------KN  226 (315)
T ss_pred             EEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCCEEecCCCCceEEEEEccCC------ce
Confidence            88  55  66888888 9999999999999888887 79999999999999999999999999999999999      56


Q ss_pred             eeeecCCcCCEEEEEecCC-EEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEe--cC
Q 009993          357 VATWIPHTGPVNSLAFEFP-WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GA  433 (520)
Q Consensus       357 ~~~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~  433 (520)
                      +..+ +|...|.+++|+|+ +.+++..+..|+|||+.+............       .+   ........++++++  +|
T Consensus       227 lysl-~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~-------g~---s~~~~~~~clslaws~dG  295 (315)
T KOG0279|consen  227 LYSL-EAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGI-------GP---SSKAGDPICLSLAWSADG  295 (315)
T ss_pred             eEec-cCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccccc-------cc---ccccCCcEEEEEEEcCCC
Confidence            6555 67889999999994 666666777899999998644432221110       11   11222334444554  57


Q ss_pred             CEEEEecCCCeEEEEeCC
Q 009993          434 DRIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       434 ~~l~sg~~Dg~v~iwd~~  451 (520)
                      ..|++|-.|+.|++|.+.
T Consensus       296 ~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  296 QTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             cEEEeeecCCcEEEEEee
Confidence            799999999999999875

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.1e-38  Score=276.29  Aligned_cols=291  Identities=21%  Similarity=0.315  Sum_probs=247.7

Q ss_pred             HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR  210 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd  210 (520)
                      ++.+++.||.+.|.|+++.|..++++||+.|++++|||+.+|+...++.+|-..|..+.  +...++++++.|+.|+.||
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD  221 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD  221 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence            56889999999999999999999999999999999999999999999999988887665  7778999999999999999


Q ss_pred             cccCcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eC
Q 009993          211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PH  285 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~  285 (520)
                      ++..             +.+..+.||-..|.|++..+  +.|++|+.|.++++||+++...+..+. |..+|.++.  +-
T Consensus       222 Le~n-------------kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~  288 (460)
T KOG0285|consen  222 LEYN-------------KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT  288 (460)
T ss_pred             chhh-------------hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecC
Confidence            9764             46777889999999999964  789999999999999999999999998 999999987  55


Q ss_pred             CCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCc
Q 009993          286 DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT  364 (520)
Q Consensus       286 ~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  364 (520)
                      +..+++|+ |++|++||++.|+....+. .|...+.+++.+|....+++++.|. |+-|++..+      ..+..+.+|.
T Consensus       289 dpqvit~S~D~tvrlWDl~agkt~~tlt-~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g------~f~~nlsgh~  360 (460)
T KOG0285|consen  289 DPQVITGSHDSTVRLWDLRAGKTMITLT-HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEG------EFLQNLSGHN  360 (460)
T ss_pred             CCceEEecCCceEEEeeeccCceeEeee-cccceeeEEecCCchhhhhccCCcc-ceeccCCcc------chhhcccccc
Confidence            77888888 9999999999999998887 5999999999999999999998886 999999999      6777899999


Q ss_pred             CCEEEEEec-CCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCC
Q 009993          365 GPVNSLAFE-FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEG  443 (520)
Q Consensus       365 ~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg  443 (520)
                      +-|++++.+ ..++++|+++|.+.+||.+++.....         ...+..+-...........|++-.+.+|+||..|.
T Consensus       361 ~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~---------~~t~vqpGSl~sEagI~as~fDktg~rlit~eadK  431 (460)
T KOG0285|consen  361 AIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQR---------GQTIVQPGSLESEAGIFASCFDKTGSRLITGEADK  431 (460)
T ss_pred             ceeeeeeeccCceEEEcCCceEEEEEecCcCccccc---------ccccccCCccccccceeEEeecccCceEEeccCCc
Confidence            999999995 47999999999999999998633221         11112222222222333344444556999999999


Q ss_pred             eEEEEeCCch
Q 009993          444 IVRIWNFSQA  453 (520)
Q Consensus       444 ~v~iwd~~~~  453 (520)
                      +|++|.-.+.
T Consensus       432 tIk~~keDe~  441 (460)
T KOG0285|consen  432 TIKMYKEDEH  441 (460)
T ss_pred             ceEEEecccc
Confidence            9999986644

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.9e-38  Score=275.39  Aligned_cols=280  Identities=23%  Similarity=0.347  Sum_probs=251.9

Q ss_pred             HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR  210 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd  210 (520)
                      .+.+.+.||..+|+.+-|+|+-.++++++.|++|++||..+|+....+++|...+..++  ..|+++++++.|=.+++||
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd  178 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD  178 (406)
T ss_pred             CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence            55788899999999999999999999999999999999999999999999999988877  6789999999999999999


Q ss_pred             cccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eC
Q 009993          211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PH  285 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~  285 (520)
                      ..+.            ..+...+.+|...|.+++|  .++++++++.|.+|+.|++.++.+++++. |..+|..+.  .|
T Consensus       179 ~~~~------------~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~D  246 (406)
T KOG0295|consen  179 FDTF------------FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQD  246 (406)
T ss_pred             HHHH------------HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCC
Confidence            8664            3456677899999999999  78999999999999999999999999998 888999888  67


Q ss_pred             CCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCC---------------CCEEEEEeCCCeEEEEEcccCc
Q 009993          286 DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT---------------GDFLFTGGEDGAIHMYEIINDC  349 (520)
Q Consensus       286 ~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~---------------~~~l~tg~~dg~i~iwd~~~~~  349 (520)
                      |.++++++ |.++++|-..++++...+. .|..+|.+++|.|.               +.++++++.|++|++||+.++ 
T Consensus       247 Gti~As~s~dqtl~vW~~~t~~~k~~lR-~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-  324 (406)
T KOG0295|consen  247 GTIIASCSNDQTLRVWVVATKQCKAELR-EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-  324 (406)
T ss_pred             eeEEEecCCCceEEEEEeccchhhhhhh-ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-
Confidence            88999999 9999999999998888887 69999999999773               258999999999999999999 


Q ss_pred             cccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeE
Q 009993          350 TEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLL  427 (520)
Q Consensus       350 ~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  427 (520)
                           .++.++.+|...|..++|+|  +||+++.+|+++++||+++.                   .+...+..|..-|.
T Consensus       325 -----~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-------------------~cmk~~~ah~hfvt  380 (406)
T KOG0295|consen  325 -----MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL-------------------QCMKTLEAHEHFVT  380 (406)
T ss_pred             -----eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc-------------------eeeeccCCCcceeE
Confidence                 89999999999999999985  89999999999999999984                   44455567777788


Q ss_pred             EEEecCC--EEEEecCCCeEEEEeC
Q 009993          428 SVDIGAD--RIVCGGEEGIVRIWNF  450 (520)
Q Consensus       428 ~~~~~~~--~l~sg~~Dg~v~iwd~  450 (520)
                      +++++.+  +++||+-|.++++|.-
T Consensus       381 ~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  381 SLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             EEecCCCCceEEeccccceeeeeec
Confidence            8887765  9999999999999974

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.8e-39  Score=288.99  Aligned_cols=245  Identities=22%  Similarity=0.287  Sum_probs=226.3

Q ss_pred             CCcccHH----HhhhhhccccccEEEEEEccC--CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEE
Q 009993          126 SDDKSWK----ELIDVLYGHTEAVLTVFVLAS--AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLL  197 (520)
Q Consensus       126 ~~~~~W~----~~~~~l~~h~~~V~~l~~~~~--~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l  197 (520)
                      ...++|+    ..+++|+||++.|.++.|+|.  +..+|||+.||++++|++++..++..+.+|...|..+.  |+|++|
T Consensus       197 G~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L  276 (459)
T KOG0272|consen  197 GLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFL  276 (459)
T ss_pred             CceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCcee
Confidence            3448888    668899999999999999996  66899999999999999999999999999988876654  999999


Q ss_pred             EEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-
Q 009993          198 VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-  274 (520)
Q Consensus       198 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-  274 (520)
                      +|++.|.+-++||+.++.             ......||...|.+++|  ||..++||+.|..-+|||+++++++..+. 
T Consensus       277 ~TasfD~tWRlWD~~tk~-------------ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g  343 (459)
T KOG0272|consen  277 GTASFDSTWRLWDLETKS-------------ELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG  343 (459)
T ss_pred             eecccccchhhcccccch-------------hhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecc
Confidence            999999999999998864             44556799999999999  89999999999999999999999999997 


Q ss_pred             eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecC-CCCEEEEEeCCCeEEEEEcccCcc
Q 009993          275 HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH-TGDFLFTGGEDGAIHMYEIINDCT  350 (520)
Q Consensus       275 ~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~tg~~dg~i~iwd~~~~~~  350 (520)
                      |..+|.+++  |+|..+++|+ |++++|||++....+..+. +|..-|+.+.|+| .|.+|+|++.|++++||..++.  
T Consensus       344 H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip-AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~--  420 (459)
T KOG0272|consen  344 HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP-AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW--  420 (459)
T ss_pred             cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc-cccchhhheEecccCCeEEEEcccCcceeeecCCCc--
Confidence            999999988  9999999999 9999999999999998887 7999999999999 7889999999999999999999  


Q ss_pred             ccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEe
Q 009993          351 EANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLID  390 (520)
Q Consensus       351 ~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd  390 (520)
                          .+++++.||.+.|.++++++  +++++++.|.++++|.
T Consensus       421 ----~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  421 ----SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ----ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence                78999999999999999965  6899999999999995

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.9e-36  Score=271.19  Aligned_cols=310  Identities=21%  Similarity=0.290  Sum_probs=257.3

Q ss_pred             HhhhhhccccccEEEEEEccCCC-EEEEEeCCCeEEEEECCCC--cEEE--Ee----------CCCCceEEEEe--cCCC
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDG--FSIA--SS----------KPLGCTIRAVA--ADKK  195 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~-~l~sgs~dg~v~vwd~~~~--~~~~--~~----------~~~~~~v~~~~--~~~~  195 (520)
                      ...+.+. |+.+|.+.+|+|-.. ++++|+.|-+.++|++...  ....  .+          ...+..|++++  .+|.
T Consensus       170 ~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~  248 (524)
T KOG0273|consen  170 SKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT  248 (524)
T ss_pred             cceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC
Confidence            3345566 999999999999765 8999999999999999741  1100  01          11223455555  6799


Q ss_pred             EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEe
Q 009993          196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL  273 (520)
Q Consensus       196 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~  273 (520)
                      .||+|+.||.+++|+....              ....+..|.++|.++.|  .|++|++++.|+++.+||..++...+.+
T Consensus       249 ~LatG~~~G~~riw~~~G~--------------l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f  314 (524)
T KOG0273|consen  249 LLATGSEDGEARIWNKDGN--------------LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF  314 (524)
T ss_pred             eEEEeecCcEEEEEecCch--------------hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence            9999999999999997543              55677889999999999  6789999999999999999999999988


Q ss_pred             e-eccCEEEEe-eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcc
Q 009993          274 R-HSDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT  350 (520)
Q Consensus       274 ~-~~~~v~~~~-~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~  350 (520)
                      . |..+-..+. .+...+++++ |+.|+++.+....++.++. +|.++|.++.|+|.|.+|++++.|++++||+....  
T Consensus       315 ~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~-GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~--  391 (524)
T KOG0273|consen  315 EFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFI-GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS--  391 (524)
T ss_pred             eeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeee-cccCceEEEEECCCCceEEEecCCCeeEeeecCCC--
Confidence            8 666656666 5666777777 9999999999999999998 59999999999999999999999999999999888  


Q ss_pred             ccceeeeeeecCCcCCEEEEEecC-----------CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc
Q 009993          351 EANVLLVATWIPHTGPVNSLAFEF-----------PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML  419 (520)
Q Consensus       351 ~~~~~~~~~~~~h~~~v~~l~~~~-----------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (520)
                          .....+.+|...|+.+.|+|           ..+++++.|++|++||+..+                   .+...+
T Consensus       392 ----~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-------------------v~i~~f  448 (524)
T KOG0273|consen  392 ----NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-------------------VPIHTL  448 (524)
T ss_pred             ----cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-------------------ceeEee
Confidence                67888999999999999965           38999999999999999984                   455567


Q ss_pred             cCcceeeEEEEec--CCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccccc
Q 009993          420 HGFECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA  494 (520)
Q Consensus       420 ~~~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~  494 (520)
                      ..|..+|++++++  +.++|+|+.||.|.+|+..+++.++.....           -.+..+.|+.+|.++..|..+
T Consensus       449 ~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-----------~~Ifel~Wn~~G~kl~~~~sd  514 (524)
T KOG0273|consen  449 MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-----------GGIFELCWNAAGDKLGACASD  514 (524)
T ss_pred             ccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-----------CeEEEEEEcCCCCEEEEEecC
Confidence            7899999999887  459999999999999999998776543222           225789999999988877543

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.6e-35  Score=250.65  Aligned_cols=282  Identities=17%  Similarity=0.229  Sum_probs=242.7

Q ss_pred             HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECC-CCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEE
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLE-DGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCW  209 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~-~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vw  209 (520)
                      ..+..+.||++.|+.+.|+|+|.+|+||+.|..|.+|++. .-+....+++|...|..+.  .+++.+++++.|.+|+.|
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW  117 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence            4466788999999999999999999999999999999964 4456677889999999887  899999999999999999


Q ss_pred             EcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--e
Q 009993          210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--P  284 (520)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~  284 (520)
                      |+++|.             ......+|..-|+++..   ....+.+|+.||++++||+++...++++.....++++.  .
T Consensus       118 D~~tG~-------------~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d  184 (338)
T KOG0265|consen  118 DAETGK-------------RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKD  184 (338)
T ss_pred             ecccce-------------eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecc
Confidence            999874             67788899999999987   45678999999999999999999999998788888877  5


Q ss_pred             CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCC
Q 009993          285 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH  363 (520)
Q Consensus       285 ~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h  363 (520)
                      .+..+.+|. |+.|++||++.+.....+. ||..+|+.+..+|+|.++.+-+.|.++++||++...+..  .++..+.+|
T Consensus       185 ~s~qv~sggIdn~ikvWd~r~~d~~~~ls-Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~--R~v~if~g~  261 (338)
T KOG0265|consen  185 TSDQVISGGIDNDIKVWDLRKNDGLYTLS-GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQ--RCVKIFQGH  261 (338)
T ss_pred             cccceeeccccCceeeeccccCcceEEee-cccCceeeEEeccCCCccccccccceEEEEEecccCCCC--ceEEEeecc
Confidence            677888888 9999999999999999887 799999999999999999999999999999998764332  346666665


Q ss_pred             cC----CEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--E
Q 009993          364 TG----PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--R  435 (520)
Q Consensus       364 ~~----~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~  435 (520)
                      .-    ....++|+|  ..+.+|+.|..+++||...                   ....-.+.||...|.+++|.+.  .
T Consensus       262 ~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~-------------------r~~lyklpGh~gsvn~~~Fhp~e~i  322 (338)
T KOG0265|consen  262 IHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS-------------------RRILYKLPGHYGSVNEVDFHPTEPI  322 (338)
T ss_pred             hhhhhhhcceeeccCCCCccccccccceEEEeeccc-------------------ccEEEEcCCcceeEEEeeecCCCcE
Confidence            32    335567776  6899999999999999876                   3444557899999999998876  9


Q ss_pred             EEEecCCCeEEEEe
Q 009993          436 IVCGGEEGIVRIWN  449 (520)
Q Consensus       436 l~sg~~Dg~v~iwd  449 (520)
                      |.+++.|.+|++=+
T Consensus       323 ils~~sdk~i~lge  336 (338)
T KOG0265|consen  323 ILSCSSDKTIYLGE  336 (338)
T ss_pred             EEEeccCceeEeec
Confidence            99999999998743

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-34  Score=275.14  Aligned_cols=371  Identities=17%  Similarity=0.225  Sum_probs=283.6

Q ss_pred             hhhhhhcCCCCCCCCCCCCCCCcccHH------------HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 009993          106 EFYCERWGLPIASAPLGAGFSDDKSWK------------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED  173 (520)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~W~------------~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~  173 (520)
                      .+-|..|+ |++............+|.            .+.+++.||-+.|+++.|+.|.++|++||.|-++++|+++.
T Consensus        98 ~v~~i~fS-Png~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~  176 (893)
T KOG0291|consen   98 GVGAIKFS-PNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDG  176 (893)
T ss_pred             ccceEEEC-CCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecc
Confidence            34566777 666666555556666676            23667889999999999999999999999999999999987


Q ss_pred             CcE--EEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeec-------------c-CCccc-------c
Q 009993          174 GFS--IASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDI-------------S-GSEKQ-------N  228 (520)
Q Consensus       174 ~~~--~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-------------~-~~~~~-------~  228 (520)
                      .+.  ...+.+|..+|.+.-  .+...+++.+.||.+.+|......+.....             . +.+..       .
T Consensus       177 ~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~  256 (893)
T KOG0291|consen  177 NKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKT  256 (893)
T ss_pred             ccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEE
Confidence            665  556789999888754  778889999999999999876321111100             0 00000       0


Q ss_pred             ceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEcC--CeEEEEE
Q 009993          229 TQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTSG--SDVYIWD  301 (520)
Q Consensus       229 ~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~d--~~i~iwd  301 (520)
                      ...-+......|++.+|+.  +.|++|-..|...+|++....+++.+. ...+|..+.  ..|.+++.|+.  |.+.||+
T Consensus       257 ~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVwe  336 (893)
T KOG0291|consen  257 KKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWE  336 (893)
T ss_pred             EeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEE
Confidence            0111222337788999944  678999999999999999999999998 557888887  45999999994  7999999


Q ss_pred             CCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEec--CCEEEE
Q 009993          302 TNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVS  379 (520)
Q Consensus       302 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s  379 (520)
                      ..+..-+.+.. +|...+++++++|||++++||++||+|+|||...+      .|..++..|++.|+.+.|.  ++.+++
T Consensus       337 WqsEsYVlKQQ-gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg------fC~vTFteHts~Vt~v~f~~~g~~lls  409 (893)
T KOG0291|consen  337 WQSESYVLKQQ-GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG------FCFVTFTEHTSGVTAVQFTARGNVLLS  409 (893)
T ss_pred             eeccceeeecc-ccccceeeEEECCCCcEEEeccCCCcEEEEeccCc------eEEEEeccCCCceEEEEEEecCCEEEE
Confidence            99988777776 79999999999999999999999999999999999      8999999999999999994  689999


Q ss_pred             EeCCCcEEEEeCCcccccCCCCCCCceee--e-----------------------eecCCCcccccCcceeeEE--EEec
Q 009993          380 AAGDGKLSLIDVRKLLRSGRPTSGKRVSR--V-----------------------IEVEPPQRMLHGFECNLLS--VDIG  432 (520)
Q Consensus       380 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~--~-----------------------~~~~~~~~~~~~~~~~v~~--~~~~  432 (520)
                      .+-||+|+.||+.............+.+-  +                       ........++.||.++|.+  ++++
T Consensus       410 sSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~  489 (893)
T KOG0291|consen  410 SSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD  489 (893)
T ss_pred             eecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc
Confidence            99999999999986544333222221110  0                       1223445578899999997  5555


Q ss_pred             CCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccccc
Q 009993          433 ADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA  494 (520)
Q Consensus       433 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~  494 (520)
                      ++.|++|++|.+||+||+-......+          .-......+.++|+|||+.++++.++
T Consensus       490 ~~~LaS~SWDkTVRiW~if~s~~~vE----------tl~i~sdvl~vsfrPdG~elaVaTld  541 (893)
T KOG0291|consen  490 GSLLASGSWDKTVRIWDIFSSSGTVE----------TLEIRSDVLAVSFRPDGKELAVATLD  541 (893)
T ss_pred             cCeEEeccccceEEEEEeeccCceee----------eEeeccceeEEEEcCCCCeEEEEEec
Confidence            66999999999999999864321111          11223457899999999999998875

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.3e-36  Score=269.48  Aligned_cols=272  Identities=21%  Similarity=0.311  Sum_probs=236.6

Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccee
Q 009993          141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHL  218 (520)
Q Consensus       141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~  218 (520)
                      -+.+|..+.|.|+|+.|++|+..|.+.+|+..+-.....++.|..+|.++.  .++..+++|+.+|.|++|+..-.    
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn----  170 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN----  170 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh----
Confidence            345899999999999999999999999999855444444578999998876  89999999999999999986432    


Q ss_pred             eeccCCccccceEEeccC-CCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEE
Q 009993          219 FDISGSEKQNTQFRLWEH-EGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVAST  292 (520)
Q Consensus       219 ~~~~~~~~~~~~~~~~~h-~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~  292 (520)
                                .+..+..| ...|++++|  +...++++|.||+|+|||....+....+. |.-.|.+++  |...+++++
T Consensus       171 ----------nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasg  240 (464)
T KOG0284|consen  171 ----------NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASG  240 (464)
T ss_pred             ----------hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEc
Confidence                      23334444 499999999  56789999999999999999888877777 888899998  788899999


Q ss_pred             c-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEE
Q 009993          293 S-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLA  371 (520)
Q Consensus       293 ~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~  371 (520)
                      + |..|++||.+++.++.++. +|...|..+.|+|++++|++++.|..+++||+++.      +.+.++.+|...|+++.
T Consensus       241 skDnlVKlWDprSg~cl~tlh-~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m------kEl~~~r~Hkkdv~~~~  313 (464)
T KOG0284|consen  241 SKDNLVKLWDPRSGSCLATLH-GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM------KELFTYRGHKKDVTSLT  313 (464)
T ss_pred             cCCceeEeecCCCcchhhhhh-hccceEEEEEEcCCCCeeEEccCCceEEEEehhHh------HHHHHhhcchhhheeec
Confidence            9 8999999999999999997 69999999999999999999999999999999977      77889999999999999


Q ss_pred             ecC---CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC--CEEEEecCCCeEE
Q 009993          372 FEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGIVR  446 (520)
Q Consensus       372 ~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~v~  446 (520)
                      |+|   .+|.+|+.||.|..|.+...                  .+...+-.+|...|+++++++  ..|++|+.|.+++
T Consensus       314 WhP~~~~lftsgg~Dgsvvh~~v~~~------------------~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~r  375 (464)
T KOG0284|consen  314 WHPLNESLFTSGGSDGSVVHWVVGLE------------------EPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVR  375 (464)
T ss_pred             cccccccceeeccCCCceEEEecccc------------------ccccCCCcccccceeeeeccccceeEeecCCCccee
Confidence            987   79999999999999999732                  344455577888899888876  4999999999999


Q ss_pred             EEeCC
Q 009993          447 IWNFS  451 (520)
Q Consensus       447 iwd~~  451 (520)
                      +|.-.
T Consensus       376 fw~r~  380 (464)
T KOG0284|consen  376 FWTRN  380 (464)
T ss_pred             eeccC
Confidence            99754

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.6e-34  Score=241.16  Aligned_cols=283  Identities=21%  Similarity=0.332  Sum_probs=232.2

Q ss_pred             hhhhccccccEEEEEEccC-CCEEEEEeCCCeEEEEECCCC---cEEEEe-CCCCceEEEEe--cCCCEEEEEeCCCcEE
Q 009993          135 IDVLYGHTEAVLTVFVLAS-AKLLFTSGYDSIVRMWHLEDG---FSIASS-KPLGCTIRAVA--ADKKLLVAGGTDGFIH  207 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~-~~~l~sgs~dg~v~vwd~~~~---~~~~~~-~~~~~~v~~~~--~~~~~l~sg~~dg~i~  207 (520)
                      ++.++||++.|..++|+|- |..|||+|.|+.|++|+...+   .+...+ .+|...|++++  |.|++|++|+.|.++.
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~   86 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV   86 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence            5678999999999999998 889999999999999999853   333333 36888887766  8999999999999999


Q ss_pred             EEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCC---cEEEEee-eccCEEE
Q 009993          208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL---KCLKVLR-HSDWVYG  281 (520)
Q Consensus       208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~---~~~~~~~-~~~~v~~  281 (520)
                      ||.-..+.           ..+...+.||...|.|++|  +|++|++++.|+.|-||.+..+   ++...++ |..-|..
T Consensus        87 Iw~k~~~e-----------fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~  155 (312)
T KOG0645|consen   87 IWKKEDGE-----------FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKH  155 (312)
T ss_pred             EeecCCCc-----------eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccE
Confidence            99865443           4578889999999999999  8899999999999999998744   5666666 8888887


Q ss_pred             Ee--eCCCEEEEEc-CCeEEEEECC---CCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccccee
Q 009993          282 LA--PHDTTVASTS-GSDVYIWDTN---SGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL  355 (520)
Q Consensus       282 ~~--~~~~~l~~~~-d~~i~iwd~~---~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~  355 (520)
                      +.  |...+|++++ |++|++|+-.   .-.+..++. +|...|.+++|++.|..|++++.|++++||.....      .
T Consensus       156 V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~-g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~------~  228 (312)
T KOG0645|consen  156 VIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD-GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD------L  228 (312)
T ss_pred             EEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEec-CccceEEEEEecCCCceEEEecCCcceEeeeeccC------c
Confidence            77  6669999999 9999999876   236778886 69999999999999999999999999999987644      1


Q ss_pred             eeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-
Q 009993          356 LVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-  434 (520)
Q Consensus       356 ~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-  434 (520)
                          -.-|...++.+.|....|++++.|+.|+++.-.......            ........-..|...|.++.+++. 
T Consensus       229 ----~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p------------~~~l~~~~~~aHe~dVNsV~w~p~~  292 (312)
T KOG0645|consen  229 ----SGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEP------------SWNLLAKKEGAHEVDVNSVQWNPKV  292 (312)
T ss_pred             ----chhcccceEeeeecccceEeccCCCEEEEEEecCCCCCc------------hHHHHHhhhcccccccceEEEcCCC
Confidence                124778999999998899999999999999876421100            001112234567888888888873 


Q ss_pred             --EEEEecCCCeEEEEeCC
Q 009993          435 --RIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       435 --~l~sg~~Dg~v~iwd~~  451 (520)
                        +|++||+||.|++|.+.
T Consensus       293 ~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  293 SNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCceeecCCCceEEEEEec
Confidence              99999999999999875

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.9e-35  Score=240.86  Aligned_cols=275  Identities=18%  Similarity=0.246  Sum_probs=232.8

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV  212 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~  212 (520)
                      .++|..|.++|.++.|+-+|+|.+|++.|.+|++|+...|.+++++.+|+..|....  .|+..+++|+.|..|.+||+.
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~   89 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN   89 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence            567889999999999999999999999999999999999999999999999998876  889999999999999999999


Q ss_pred             cCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCC--cEEEEee-eccCEEEEeeCCC
Q 009993          213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL--KCLKVLR-HSDWVYGLAPHDT  287 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~-~~~~v~~~~~~~~  287 (520)
                      +|.             ....+.+|.+.|+.+.|  +...+++|+.|.++++||.++.  ++++.+. ..+.|.++...+.
T Consensus        90 TGk-------------v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h  156 (307)
T KOG0316|consen   90 TGK-------------VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH  156 (307)
T ss_pred             cCe-------------eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc
Confidence            984             67789999999999999  4578999999999999998754  6777776 7889999999999


Q ss_pred             EEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCC
Q 009993          288 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP  366 (520)
Q Consensus       288 ~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  366 (520)
                      .+++|+ ||+++.||++.|+....+   ...+|++++|+++++..++++.|+++++.|-.++      +.+..+.+|...
T Consensus       157 eIvaGS~DGtvRtydiR~G~l~sDy---~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG------klL~sYkGhkn~  227 (307)
T KOG0316|consen  157 EIVAGSVDGTVRTYDIRKGTLSSDY---FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG------KLLKSYKGHKNM  227 (307)
T ss_pred             EEEeeccCCcEEEEEeecceeehhh---cCCcceeEEecCCCCEEEEeeccceeeecccchh------HHHHHhcccccc
Confidence            999999 999999999999887665   4568999999999999999999999999999999      788999999876


Q ss_pred             EEEEEe----cCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcce-eeEEEEecCC--EEEEe
Q 009993          367 VNSLAF----EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC-NLLSVDIGAD--RIVCG  439 (520)
Q Consensus       367 v~~l~~----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~--~l~sg  439 (520)
                      -+.+..    +..++++|+.||.|++||+......                   ..+..+.. .+.++++.+.  .++++
T Consensus       228 eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~-------------------sk~~~~~~v~v~dl~~hp~~~~f~~A  288 (307)
T KOG0316|consen  228 EYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQI-------------------SKLSVVSTVIVTDLSCHPTMDDFITA  288 (307)
T ss_pred             eeeeeeeecccceeEEeccCCceEEEEEeccceee-------------------eeeccCCceeEEeeecccCccceeEe
Confidence            554443    3469999999999999999874222                   22233332 3667777665  55555


Q ss_pred             cCCCeEEEEeCC
Q 009993          440 GEEGIVRIWNFS  451 (520)
Q Consensus       440 ~~Dg~v~iwd~~  451 (520)
                      .. +.+.+|.-+
T Consensus       289 ~~-~~~~~~~~~  299 (307)
T KOG0316|consen  289 TG-HGDLFWYQE  299 (307)
T ss_pred             cC-Cceeceeeh
Confidence            54 446666543

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.8e-35  Score=276.08  Aligned_cols=316  Identities=21%  Similarity=0.326  Sum_probs=231.0

Q ss_pred             Hhhhhhcc-ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--c--CCCEEEEEeCCCcEE
Q 009993          133 ELIDVLYG-HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--A--DKKLLVAGGTDGFIH  207 (520)
Q Consensus       133 ~~~~~l~~-h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~--~~~~l~sg~~dg~i~  207 (520)
                      ++++.+++ |+++|..++|+|.+.++++|+.|+.|+|||+..+.+...+++|++.|.++.  |  +...|++|..|++++
T Consensus        95 k~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~  174 (775)
T KOG0319|consen   95 KLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVR  174 (775)
T ss_pred             hHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEE
Confidence            66777777 999999999999999999999999999999999999999999999998876  3  334689999999999


Q ss_pred             EEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEEC---------------------
Q 009993          208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDR---------------------  264 (520)
Q Consensus       208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~---------------------  264 (520)
                      +||+.+...            +...+..|.+.|+++++  ++..+++++.|..+.+||+                     
T Consensus       175 vwnl~~~~t------------cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l  242 (775)
T KOG0319|consen  175 VWNLNDKRT------------CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRL  242 (775)
T ss_pred             EEEcccCch------------HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEe
Confidence            999986543            22233334444444444  3333333333333333332                     


Q ss_pred             -------------------------CC-----------------------------------------------------
Q 009993          265 -------------------------AL-----------------------------------------------------  266 (520)
Q Consensus       265 -------------------------~~-----------------------------------------------------  266 (520)
                                               ++                                                     
T Consensus       243 ~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~  322 (775)
T KOG0319|consen  243 REELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGY  322 (775)
T ss_pred             chhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCC
Confidence                                     11                                                     


Q ss_pred             ---------------------------------CcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEEC--------
Q 009993          267 ---------------------------------LKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDT--------  302 (520)
Q Consensus       267 ---------------------------------~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~--------  302 (520)
                                                       ..+.-...|...|.+++  .+|-++++|+ |.++++|.+        
T Consensus       323 ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~  402 (775)
T KOG0319|consen  323 NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSL  402 (775)
T ss_pred             chhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhh
Confidence                                             00100000223333333  2333455555 555555544        


Q ss_pred             ---------------------------------------CCCee---eEEe-----ecccccceEEEEecCCCCEEEEEe
Q 009993          303 ---------------------------------------NSGCL---LTVV-----NGAHVGNTKSLARSHTGDFLFTGG  335 (520)
Q Consensus       303 ---------------------------------------~~~~~---~~~~-----~~~~~~~i~~l~~s~~~~~l~tg~  335 (520)
                                                             ...+.   ...+     ...|...|++++++|+.++++|||
T Consensus       403 ~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S  482 (775)
T KOG0319|consen  403 CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGS  482 (775)
T ss_pred             hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecc
Confidence                                                   33100   0001     125888999999999999999999


Q ss_pred             CCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecC
Q 009993          336 EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVE  413 (520)
Q Consensus       336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  413 (520)
                      .|.+.+||++...      ....++.+|...|.++.|++  +.++|+|.|++|+||.+.+                   .
T Consensus       483 qDktaKiW~le~~------~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-------------------f  537 (775)
T KOG0319|consen  483 QDKTAKIWDLEQL------RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-------------------F  537 (775)
T ss_pred             cccceeeecccCc------eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc-------------------c
Confidence            9999999999977      78999999999999999987  5999999999999999998                   5


Q ss_pred             CCcccccCcceeeEEEEec--CCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccccc
Q 009993          414 PPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQC  491 (520)
Q Consensus       414 ~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~  491 (520)
                      .+...+.||++.|+-..|-  +..|++++.||-|++|++.++..+..+-.          ++.++-+++.+|++..+.++
T Consensus       538 SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~----------H~DrvWaL~~~~~~~~~~tg  607 (775)
T KOG0319|consen  538 SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA----------HNDRVWALSVSPLLDMFVTG  607 (775)
T ss_pred             eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh----------ccceeEEEeecCccceeEec
Confidence            6677889999999988884  55999999999999999999988776433          34556788888988877776


Q ss_pred             cccc
Q 009993          492 SVAA  495 (520)
Q Consensus       492 s~~~  495 (520)
                      +.++
T Consensus       608 g~Dg  611 (775)
T KOG0319|consen  608 GGDG  611 (775)
T ss_pred             CCCe
Confidence            6443

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=7.4e-35  Score=247.81  Aligned_cols=277  Identities=17%  Similarity=0.245  Sum_probs=240.3

Q ss_pred             hHHHhhcCcchhhhhhhhhcCCCCCCCCCCCCCCCcccHHHh----hhhhccccccEEEEEEccCCCEEEEEeCCCeEEE
Q 009993           93 ILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKEL----IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRM  168 (520)
Q Consensus        93 ~~~~~~~~~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~----~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~v  168 (520)
                      .-+++++.|.  .++++..|........+++.+....+|+..    .+.+.-....|..++|+|.|+++|+|+-|+...|
T Consensus        46 ~~rr~LkGH~--~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi  123 (343)
T KOG0286|consen   46 RTRRTLKGHL--NKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI  123 (343)
T ss_pred             eeEEEecccc--cceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence            3346777776  678999998444444455556666789843    5566677899999999999999999999999999


Q ss_pred             EECCCC------cEEEEeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeE
Q 009993          169 WHLEDG------FSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPIT  241 (520)
Q Consensus       169 wd~~~~------~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  241 (520)
                      |++.+.      ...+.+.+|...+.++. .+...|+|++.|.+..+||++++.             ....+.+|.+.|.
T Consensus       124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~-------------~~~~f~GH~gDV~  190 (343)
T KOG0286|consen  124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQ-------------QTQVFHGHTGDVM  190 (343)
T ss_pred             EecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccce-------------EEEEecCCcccEE
Confidence            999855      34566889999998887 678899999999999999999874             6678889999999


Q ss_pred             EEEE---cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeec-
Q 009993          242 SLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG-  313 (520)
Q Consensus       242 ~l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~-  313 (520)
                      ++.+   +++.+++|+-|++.++||++.+.+.++|. |...|+++.  |+|.-+++|+ |++.++||++..+.+..+.. 
T Consensus       191 slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~  270 (343)
T KOG0286|consen  191 SLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD  270 (343)
T ss_pred             EEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC
Confidence            9999   66899999999999999999999999998 999999998  9999999999 89999999999998888862 


Q ss_pred             ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEe
Q 009993          314 AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLID  390 (520)
Q Consensus       314 ~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd  390 (520)
                      ....+|++++|+..|++|++|..|.++.+||.-.+      ..+..+.+|...|+|+..+|  --+++|+.|..++||.
T Consensus       271 ~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~------e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  271 SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG------ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             cccCCceeEEEcccccEEEeeecCCceeEeecccc------ceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            23458999999999999999999999999999888      67888999999999999976  5899999999999994

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.6e-34  Score=259.44  Aligned_cols=269  Identities=20%  Similarity=0.268  Sum_probs=233.6

Q ss_pred             ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeee
Q 009993          143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFD  220 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  220 (520)
                      ..|++++|+.+|.+||+|+.||.+++|+. +|..+.++..|..+|.++.  ..|++|++++.||++.+||..++.     
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~-----  309 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT-----  309 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce-----
Confidence            68999999999999999999999999995 5788889999999999988  678899999999999999997764     


Q ss_pred             ccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CC
Q 009993          221 ISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GS  295 (520)
Q Consensus       221 ~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~  295 (520)
                              ....+.-|..+-.++.| +...+++++.|+.|+++.+....++.++. |.+.|.++.  |.+.+|++++ |+
T Consensus       310 --------~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~  381 (524)
T KOG0273|consen  310 --------VKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDG  381 (524)
T ss_pred             --------EEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCC
Confidence                    34455568887788899 77889999999999999999888888887 999999999  5699999999 89


Q ss_pred             eEEEEECCCCeeeEEeecccccceEEEEecCCC---------CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCC
Q 009993          296 DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG---------DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP  366 (520)
Q Consensus       296 ~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~---------~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  366 (520)
                      +++||..........+. +|...|+.+.|+|.|         ..+++++.|++|++||+..+      .++.++..|..+
T Consensus       382 TlkiWs~~~~~~~~~l~-~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g------v~i~~f~kH~~p  454 (524)
T KOG0273|consen  382 TLKIWSMGQSNSVHDLQ-AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG------VPIHTLMKHQEP  454 (524)
T ss_pred             eeEeeecCCCcchhhhh-hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC------ceeEeeccCCCc
Confidence            99999999888888887 699999999999964         47999999999999999999      889999999999


Q ss_pred             EEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcc-eeeEEEEecCCEEEEecCCC
Q 009993          367 VNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE-CNLLSVDIGADRIVCGGEEG  443 (520)
Q Consensus       367 v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~l~sg~~Dg  443 (520)
                      |++++|+|  .++++|+.||.|.+|+.++..                   ..+...+.. ..-+++...+++|..+-.||
T Consensus       455 VysvafS~~g~ylAsGs~dg~V~iws~~~~~-------------------l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~  515 (524)
T KOG0273|consen  455 VYSVAFSPNGRYLASGSLDGCVHIWSTKTGK-------------------LVKSYQGTGGIFELCWNAAGDKLGACASDG  515 (524)
T ss_pred             eEEEEecCCCcEEEecCCCCeeEeccccchh-------------------eeEeecCCCeEEEEEEcCCCCEEEEEecCC
Confidence            99999985  799999999999999998842                   222222222 23345555677999999999


Q ss_pred             eEEEEeCC
Q 009993          444 IVRIWNFS  451 (520)
Q Consensus       444 ~v~iwd~~  451 (520)
                      .+++-|++
T Consensus       516 ~vcvldlr  523 (524)
T KOG0273|consen  516 SVCVLDLR  523 (524)
T ss_pred             CceEEEec
Confidence            99999875

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-34  Score=257.52  Aligned_cols=280  Identities=18%  Similarity=0.226  Sum_probs=232.2

Q ss_pred             HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcE---EEEeCCCCceEEEE--ecCCCEEEEEeCCCcEE
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS---IASSKPLGCTIRAV--AADKKLLVAGGTDGFIH  207 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~---~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~  207 (520)
                      +..++|..|++.|+-+.|+++|++||||+.|.+..+|++.....   ..++.+|..+|..+  +||.++|++++.|..+.
T Consensus       215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~  294 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS  294 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence            55788999999999999999999999999999999999865543   67888998888765  59999999999999999


Q ss_pred             EEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--eccCEEEEe
Q 009993          208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA  283 (520)
Q Consensus       208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~  283 (520)
                      +||+.+|....            .--.+|...+.+.+|  |+..+++|+.|+++..||+.... +...+  ....|.+++
T Consensus       295 lwDv~tgd~~~------------~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dla  361 (519)
T KOG0293|consen  295 LWDVDTGDLRH------------LYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLA  361 (519)
T ss_pred             eccCCcchhhh------------hcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEE
Confidence            99999884211            111234578899999  88899999999999999986433 33332  334566666


Q ss_pred             --eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeee
Q 009993          284 --PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW  360 (520)
Q Consensus       284 --~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~  360 (520)
                        +||+++++.. |..|++++.++......+.  ...+|++++.|.+++++++.-.+..+++||+...      ..+..+
T Consensus       362 it~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis--e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~------~lv~kY  433 (519)
T KOG0293|consen  362 ITYDGKYVLLVTVDKKIRLYNREARVDRGLIS--EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN------KLVRKY  433 (519)
T ss_pred             EcCCCcEEEEEecccceeeechhhhhhhcccc--ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh------hHHHHh
Confidence              8999888877 9999999998876665543  5678999999999999999999999999999977      778888


Q ss_pred             cCCcCC--EEEEEec---CCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-
Q 009993          361 IPHTGP--VNSLAFE---FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-  434 (520)
Q Consensus       361 ~~h~~~--v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-  434 (520)
                      .||...  +..-+|.   ..++++||.|+.|+||+..+                   ..+...+.||...|.++++++. 
T Consensus       434 ~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s-------------------gkll~~LsGHs~~vNcVswNP~~  494 (519)
T KOG0293|consen  434 FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS-------------------GKLLAVLSGHSKTVNCVSWNPAD  494 (519)
T ss_pred             hcccccceEEEeccCCCCcceEEecCCCceEEEEEccC-------------------CceeEeecCCcceeeEEecCCCC
Confidence            898764  3333453   37999999999999999988                   5667788999999999999886 


Q ss_pred             --EEEEecCCCeEEEEeCCc
Q 009993          435 --RIVCGGEEGIVRIWNFSQ  452 (520)
Q Consensus       435 --~l~sg~~Dg~v~iwd~~~  452 (520)
                        .+|+||+||+||||....
T Consensus       495 p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  495 PEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             HHHhhccCCCCeEEEecCCc
Confidence              999999999999998764

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=3.2e-34  Score=252.20  Aligned_cols=277  Identities=26%  Similarity=0.366  Sum_probs=234.6

Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe-----cCCCEEEEEeCCCcEEEEEcccC
Q 009993          140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-----ADKKLLVAGGTDGFIHCWRAVEV  214 (520)
Q Consensus       140 ~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~-----~~~~~l~sg~~dg~i~vwd~~~~  214 (520)
                      -|.+.|.++...  +++++||++||++++||. .|+.+..+.+|..++.++.     +....+++++.|.++++|.++.+
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~  179 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG  179 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence            588999998886  789999999999999996 5889999999999998665     33447999999999999998776


Q ss_pred             cceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCC-------------------------C
Q 009993          215 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL-------------------------L  267 (520)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~-------------------------~  267 (520)
                      ..         .........||...|.++..  ++..+++||.|.++++|+..+                         +
T Consensus       180 ~~---------~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r  250 (423)
T KOG0313|consen  180 EN---------KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR  250 (423)
T ss_pred             hh---------hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence            42         12233344599999999998  789999999999999999321                         1


Q ss_pred             cEEEEee-eccCEEEEe-eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEE
Q 009993          268 KCLKVLR-HSDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE  344 (520)
Q Consensus       268 ~~~~~~~-~~~~v~~~~-~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd  344 (520)
                      .++.++. |..+|.++. ++...+++++ |.+|+.||+.++.....+.  ....++++.++|..++|++|+.|..|++||
T Consensus       251 ~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~--~~ksl~~i~~~~~~~Ll~~gssdr~irl~D  328 (423)
T KOG0313|consen  251 TPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLT--TNKSLNCISYSPLSKLLASGSSDRHIRLWD  328 (423)
T ss_pred             CceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeee--cCcceeEeecccccceeeecCCCCceeecC
Confidence            2233343 888999988 6778888888 9999999999999998886  567899999999999999999999999999


Q ss_pred             cccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccC
Q 009993          345 IINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG  421 (520)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (520)
                      .+++..   -....++.+|.+.|.++.|+|   ..|++|+.|+++++||+++.                  ..+...+.+
T Consensus       329 PR~~~g---s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~------------------k~plydI~~  387 (423)
T KOG0313|consen  329 PRTGDG---SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST------------------KAPLYDIAG  387 (423)
T ss_pred             CCCCCC---ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC------------------CCcceeecc
Confidence            998832   246778999999999999987   69999999999999999985                  345666889


Q ss_pred             cceeeEEEEecCC-EEEEecCCCeEEEEeCC
Q 009993          422 FECNLLSVDIGAD-RIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       422 ~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~  451 (520)
                      |...|+++.|... .|++||.|.+|+|+.-.
T Consensus       388 h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  388 HNDKVLSVDWNEGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             CCceEEEEeccCCceEEeccCcceEEEeccc
Confidence            9999999999877 99999999999998754

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.5e-34  Score=270.70  Aligned_cols=286  Identities=21%  Similarity=0.282  Sum_probs=249.4

Q ss_pred             HhhhhhccccccEEEEEEc-cCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEE
Q 009993          133 ELIDVLYGHTEAVLTVFVL-ASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCW  209 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~-~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vw  209 (520)
                      ++.+.+-|..+.|..|+|- |+.++|+.++..+.+|++++.+..+. .+.+|...|.++.  .+|.+|+||+.|.++++|
T Consensus       314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilW  392 (775)
T KOG0319|consen  314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILW  392 (775)
T ss_pred             EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEE
Confidence            4467788999999999986 67799999999999999999887776 7899999999998  677799999999999999


Q ss_pred             EcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcE---EEEe-------eec
Q 009993          210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKC---LKVL-------RHS  276 (520)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~---~~~~-------~~~  276 (520)
                      .++.+.         ....+.....+|++.|.++++   ....++++|.|+++++|++...+.   ...+       .|.
T Consensus       393 r~~~~~---------~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHd  463 (775)
T KOG0319|consen  393 RLNNNC---------SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHD  463 (775)
T ss_pred             EecCCc---------chhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhc
Confidence            984442         223455667799999999999   347899999999999999876221   1111       188


Q ss_pred             cCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccc
Q 009993          277 DWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN  353 (520)
Q Consensus       277 ~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~  353 (520)
                      ..|++++  |++.++++|+ |.+.+||+++.......+. +|...|.++.|+|..+.++|+|.|++|+||.+.+.     
T Consensus       464 KdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs-GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f-----  537 (775)
T KOG0319|consen  464 KDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS-GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF-----  537 (775)
T ss_pred             ccccceEecCCCceEEecccccceeeecccCceEEEEee-CCccceEEEEeccccceeEeccCCceEEEEEeccc-----
Confidence            8999988  9999999999 9999999999999999887 79999999999999999999999999999999999     


Q ss_pred             eeeeeeecCCcCCEEEEEe--cCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEe
Q 009993          354 VLLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI  431 (520)
Q Consensus       354 ~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  431 (520)
                       .++.++.||+..|..+.|  ++..|++++.||-|++|++.+                   ..+...+.+|...|++++-
T Consensus       538 -SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt-------------------~eC~~tlD~H~DrvWaL~~  597 (775)
T KOG0319|consen  538 -SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT-------------------NECEMTLDAHNDRVWALSV  597 (775)
T ss_pred             -eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc-------------------hhhhhhhhhccceeEEEee
Confidence             899999999999999999  568999999999999999998                   6777889999999999987


Q ss_pred             cCC--EEEEecCCCeEEEEeCCchH
Q 009993          432 GAD--RIVCGGEEGIVRIWNFSQAF  454 (520)
Q Consensus       432 ~~~--~l~sg~~Dg~v~iwd~~~~~  454 (520)
                      ++.  .++||+.||.|.+|.=.+..
T Consensus       598 ~~~~~~~~tgg~Dg~i~~wkD~Te~  622 (775)
T KOG0319|consen  598 SPLLDMFVTGGGDGRIIFWKDVTEE  622 (775)
T ss_pred             cCccceeEecCCCeEEEEeecCcHH
Confidence            665  89999999999999654443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.4e-33  Score=256.50  Aligned_cols=296  Identities=18%  Similarity=0.264  Sum_probs=237.2

Q ss_pred             HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC---CCCceEEEEe--cCCCEEEEEeCCCcEE
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK---PLGCTIRAVA--ADKKLLVAGGTDGFIH  207 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~---~~~~~v~~~~--~~~~~l~sg~~dg~i~  207 (520)
                      ++..+++.|..-|.|+.|+|||++++|++.||+|.+||-.+|+.+..+.   +|...|.+++  ||+..+++++.|.+++
T Consensus       181 KFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~K  260 (603)
T KOG0318|consen  181 KFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIK  260 (603)
T ss_pred             eeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEE
Confidence            3467788999999999999999999999999999999999999999987   8999999887  9999999999999999


Q ss_pred             EEEcccCccee------------------------------eeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec
Q 009993          208 CWRAVEVLPHL------------------------------FDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW  255 (520)
Q Consensus       208 vwd~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~  255 (520)
                      |||+.+.....                              .+.-..........+.||...|+++..  ++.+|++|+.
T Consensus       261 IWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgsy  340 (603)
T KOG0318|consen  261 IWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSY  340 (603)
T ss_pred             EEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeecc
Confidence            99997764210                              011111223366778899999999999  7799999999


Q ss_pred             CCeEEEEECCCCcEEEEee--ec---------------------------------------------------------
Q 009993          256 DMTVRVWDRALLKCLKVLR--HS---------------------------------------------------------  276 (520)
Q Consensus       256 dg~v~iwd~~~~~~~~~~~--~~---------------------------------------------------------  276 (520)
                      ||.|.-||..++..-+...  |.                                                         
T Consensus       341 DG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~a  420 (603)
T KOG0318|consen  341 DGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTA  420 (603)
T ss_pred             CceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEE
Confidence            9999999975432111000  00                                                         


Q ss_pred             -------------------------cCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEE-eecccccceEEEEecCCCC
Q 009993          277 -------------------------DWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTV-VNGAHVGNTKSLARSHTGD  329 (520)
Q Consensus       277 -------------------------~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~-~~~~~~~~i~~l~~s~~~~  329 (520)
                                               ....++.|++..+++|+ |+.|++|.+..+..... ....|.++|++++|+||+.
T Consensus       421 vv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~  500 (603)
T KOG0318|consen  421 VVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGA  500 (603)
T ss_pred             EEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCc
Confidence                                     01112236778888888 89999999987653322 2236999999999999999


Q ss_pred             EEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCcee
Q 009993          330 FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVS  407 (520)
Q Consensus       330 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  407 (520)
                      +|++|...+.+.+||+.+..     .....+.-|++.|.+++|+|  .++++|+-|-.|.||++..+.            
T Consensus       501 yla~~Da~rkvv~yd~~s~~-----~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~------------  563 (603)
T KOG0318|consen  501 YLAAGDASRKVVLYDVASRE-----VKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA------------  563 (603)
T ss_pred             EEEEeccCCcEEEEEcccCc-----eecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChh------------
Confidence            99999999999999999884     23445556999999999988  599999999999999998762            


Q ss_pred             eeeecCCCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEeCC
Q 009993          408 RVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~  451 (520)
                            ........|...|..+.|-.+ .+++.|.|..|++|++.
T Consensus       564 ------~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  564 ------KHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             ------hheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence                  224455678888999988554 99999999999999975

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=6e-34  Score=236.86  Aligned_cols=249  Identities=21%  Similarity=0.300  Sum_probs=212.5

Q ss_pred             CCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc--EEEEeCCCCceEEEEe--cCCCE
Q 009993          125 FSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVA--ADKKL  196 (520)
Q Consensus       125 ~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~--~~~~~  196 (520)
                      +...+.|.    .+.++++...+.|..+.+.|+++.||+|+. ..||+||+.++.  ++.++.+|...|.++.  .+|+.
T Consensus        19 DhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrW   97 (311)
T KOG0315|consen   19 DHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRW   97 (311)
T ss_pred             cceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeE
Confidence            45569998    567888888899999999999999999875 569999998775  6889999987777655  89999


Q ss_pred             EEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee
Q 009993          197 LVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR  274 (520)
Q Consensus       197 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  274 (520)
                      +++|++||+++|||++..              ...+...|..+|+++..  +...|++|..+|.|++||+....+...+-
T Consensus        98 MyTgseDgt~kIWdlR~~--------------~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li  163 (311)
T KOG0315|consen   98 MYTGSEDGTVKIWDLRSL--------------SCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI  163 (311)
T ss_pred             EEecCCCceEEEEeccCc--------------ccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence            999999999999998763              33345578899999999  44679999999999999999887777665


Q ss_pred             --eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCe------eeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993          275 --HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGC------LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY  343 (520)
Q Consensus       275 --~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~------~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iw  343 (520)
                        ....|.++.  ++|.+++++. .|..++|++-+.+      ++.++. .|.+.+..+.+||++++|++++.|.+++||
T Consensus       164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~-ah~~~il~C~lSPd~k~lat~ssdktv~iw  242 (311)
T KOG0315|consen  164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ-AHNGHILRCLLSPDVKYLATCSSDKTVKIW  242 (311)
T ss_pred             CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee-cccceEEEEEECCCCcEEEeecCCceEEEE
Confidence              445677766  9999999999 7999999987653      444554 699999999999999999999999999999


Q ss_pred             EcccCccccceeeeeeecCCcCCEEEEEec--CCEEEEEeCCCcEEEEeCCcc
Q 009993          344 EIINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       344 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~  394 (520)
                      +.++.-     +....+.+|...+..++|+  +.||++|+.|+.+++||+..+
T Consensus       243 n~~~~~-----kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~  290 (311)
T KOG0315|consen  243 NTDDFF-----KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG  290 (311)
T ss_pred             ecCCce-----eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC
Confidence            998872     5667788999999999995  589999999999999999984

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.3e-34  Score=264.01  Aligned_cols=241  Identities=22%  Similarity=0.321  Sum_probs=220.4

Q ss_pred             hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009993          134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA  211 (520)
Q Consensus       134 ~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~  211 (520)
                      +.+++..|++.|.++.|+|...+++++-.+|.|.|||.++...++++.....+|++..  ...+.+++|+.|..|+|++.
T Consensus         5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny   84 (794)
T KOG0276|consen    5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY   84 (794)
T ss_pred             hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence            3566778999999999999999999999999999999999999999988888887655  78889999999999999999


Q ss_pred             ccCcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCC-cEEEEee-eccCEEEEe---e
Q 009993          212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALL-KCLKVLR-HSDWVYGLA---P  284 (520)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~-~~~~~~~-~~~~v~~~~---~  284 (520)
                      .+++             .+..+..|.+.|++++.++  .+++|+|.|-+|++||.+.. .+.+++. |...|++++   .
T Consensus        85 nt~e-------------kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPk  151 (794)
T KOG0276|consen   85 NTGE-------------KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPK  151 (794)
T ss_pred             ccce-------------eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCC
Confidence            8863             7788999999999999966  68999999999999999865 6777777 999999998   4


Q ss_pred             CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCC--CEEEEEeCCCeEEEEEcccCccccceeeeeeec
Q 009993          285 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG--DFLFTGGEDGAIHMYEIINDCTEANVLLVATWI  361 (520)
Q Consensus       285 ~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~--~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~  361 (520)
                      |.+.+++++ |++|++|.+.+..+..++. +|...|++++|-+.|  .+|++|++|.+|+|||..+.      .+++++.
T Consensus       152 D~ntFaS~sLDrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk------~CV~TLe  224 (794)
T KOG0276|consen  152 DPNTFASASLDRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK------SCVQTLE  224 (794)
T ss_pred             CccceeeeeccccEEEEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecchH------HHHHHhh
Confidence            678999999 9999999999999999998 799999999998755  59999999999999999999      8999999


Q ss_pred             CCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993          362 PHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       362 ~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  394 (520)
                      ||...|..+.|+|  ..+++|+.||+++||+..+.
T Consensus       225 GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty  259 (794)
T KOG0276|consen  225 GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY  259 (794)
T ss_pred             cccccceEEEecCCCcEEEEecCCccEEEecCcce
Confidence            9999999999998  69999999999999998875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6.1e-34  Score=273.15  Aligned_cols=275  Identities=21%  Similarity=0.273  Sum_probs=227.9

Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC-------------------------------cEEEEeCCCCceEE
Q 009993          140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-------------------------------FSIASSKPLGCTIR  188 (520)
Q Consensus       140 ~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~-------------------------------~~~~~~~~~~~~v~  188 (520)
                      --...++|..|++|+.+||.|-.|..|++|.+...                               ....++.+|.++|.
T Consensus       376 nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVy  455 (707)
T KOG0263|consen  376 NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVY  455 (707)
T ss_pred             EcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCcee
Confidence            34568999999999999999999999999988631                               12334678999998


Q ss_pred             EEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEEC
Q 009993          189 AVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDR  264 (520)
Q Consensus       189 ~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~  264 (520)
                      ..+  |+.++|++++.|+++++|.+.+.             .....+.||..+|.++.|  .|-+++|+|.|++.++|..
T Consensus       456 g~sFsPd~rfLlScSED~svRLWsl~t~-------------s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~  522 (707)
T KOG0263|consen  456 GCSFSPDRRFLLSCSEDSSVRLWSLDTW-------------SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST  522 (707)
T ss_pred             eeeecccccceeeccCCcceeeeecccc-------------eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence            765  99999999999999999999774             477788899999999999  5578999999999999999


Q ss_pred             CCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeE
Q 009993          265 ALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI  340 (520)
Q Consensus       265 ~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i  340 (520)
                      .....++.+. |-+.|.|+.  |+..++++|+ |.+|++||..+|..++.|. ||.++|.+++|+|+|++|++|++||.|
T Consensus       523 d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-GH~~~V~al~~Sp~Gr~LaSg~ed~~I  601 (707)
T KOG0263|consen  523 DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-GHKGPVTALAFSPCGRYLASGDEDGLI  601 (707)
T ss_pred             ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-CCCCceEEEEEcCCCceEeecccCCcE
Confidence            9988888887 888888877  9999999999 9999999999999999996 799999999999999999999999999


Q ss_pred             EEEEcccCccccceeeeeeecCCcCCEEEEEec--CCEEEEEeCCCcEEEEeCCcccccCCCCCC-----CceeeeeecC
Q 009993          341 HMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRKLLRSGRPTSG-----KRVSRVIEVE  413 (520)
Q Consensus       341 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~~~~~  413 (520)
                      .+||+.++      ..+..+.+|++.|+++.|+  +..||+|+.|.+|++||+...........-     ........-.
T Consensus       602 ~iWDl~~~------~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~  675 (707)
T KOG0263|consen  602 KIWDLANG------SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASS  675 (707)
T ss_pred             EEEEcCCC------cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCc
Confidence            99999999      7899999999999999995  589999999999999999865433110000     0000000112


Q ss_pred             CCcccccCcceeeEEEEecCC
Q 009993          414 PPQRMLHGFECNLLSVDIGAD  434 (520)
Q Consensus       414 ~~~~~~~~~~~~v~~~~~~~~  434 (520)
                      .....+.....+|..+.|+..
T Consensus       676 ~llgs~~tK~tpv~~l~Ftrr  696 (707)
T KOG0263|consen  676 LLLGSFYTKNTPVVGLHFTRR  696 (707)
T ss_pred             ceeeeeeecCceEEEEEEecc
Confidence            233445555667888888765

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.2e-32  Score=256.41  Aligned_cols=276  Identities=32%  Similarity=0.499  Sum_probs=234.0

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV  212 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~  212 (520)
                      ++++++|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+..+.  ++++.+++++.||.|++||+.
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            467889999999999999999999999999999999999888888888887775554  788899999999999999987


Q ss_pred             cCcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCC
Q 009993          213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDT  287 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~  287 (520)
                      ++             .....+..|...|.++.|.+  .++++++.|+.|++||+++++....+. |...+.++.  +++.
T Consensus        82 ~~-------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  148 (289)
T cd00200          82 TG-------------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT  148 (289)
T ss_pred             cc-------------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC
Confidence            64             24455668888999999943  677777779999999999888888877 788888887  6678


Q ss_pred             EEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCC
Q 009993          288 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP  366 (520)
Q Consensus       288 ~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  366 (520)
                      ++++++ ++.|++||+++++.+..+. .|...+.++.|+|+++.+++++.||.|++||++.+      ..+..+..|...
T Consensus       149 ~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~------~~~~~~~~~~~~  221 (289)
T cd00200         149 FVASSSQDGTIKLWDLRTGKCVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG------KCLGTLRGHENG  221 (289)
T ss_pred             EEEEEcCCCcEEEEEccccccceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEECCCC------ceecchhhcCCc
Confidence            999998 9999999999988888887 58889999999999999999999999999999887      567777788899


Q ss_pred             EEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC--CEEEEecCC
Q 009993          367 VNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEE  442 (520)
Q Consensus       367 v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~D  442 (520)
                      +.++.|++  .++++++.||.|++||+.+..                   ....+.+|...+.++.+++  .+|++++.|
T Consensus       222 i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~-------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  282 (289)
T cd00200         222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGE-------------------CVQTLSGHTNSVTSLAWSPDGKRLASGSAD  282 (289)
T ss_pred             eEEEEEcCCCcEEEEEcCCCcEEEEEcCCce-------------------eEEEccccCCcEEEEEECCCCCEEEEecCC
Confidence            99999987  577777779999999998631                   2222335666676666665  699999999


Q ss_pred             CeEEEEe
Q 009993          443 GIVRIWN  449 (520)
Q Consensus       443 g~v~iwd  449 (520)
                      |.|++|+
T Consensus       283 ~~i~iw~  289 (289)
T cd00200         283 GTIRIWD  289 (289)
T ss_pred             CeEEecC
Confidence            9999996

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.2e-32  Score=262.06  Aligned_cols=333  Identities=17%  Similarity=0.220  Sum_probs=268.2

Q ss_pred             hccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCC-CcEEEEEcccC
Q 009993          138 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTD-GFIHCWRAVEV  214 (520)
Q Consensus       138 l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~d-g~i~vwd~~~~  214 (520)
                      |......|+|.+|++..+.|++|-..|...++++..-..++.+.-...+|..++  ..|..|+.|+.. |.+-||++.+.
T Consensus       261 ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE  340 (893)
T KOG0291|consen  261 LNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE  340 (893)
T ss_pred             ecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc
Confidence            344458999999999999999999999999999999999988876666666666  559999998875 89999998764


Q ss_pred             cceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEE
Q 009993          215 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTV  289 (520)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l  289 (520)
                                   .-+....+|...++++++  ||.++++|+.||.|++||..++-|..++. |...|+.+.  ..++.+
T Consensus       341 -------------sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~l  407 (893)
T KOG0291|consen  341 -------------SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVL  407 (893)
T ss_pred             -------------ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEE
Confidence                         356677899999999999  77899999999999999999999999998 999999887  789999


Q ss_pred             EEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCC-eEEEEEcccCccccceeeeeeecCCcCCE
Q 009993          290 ASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG-AIHMYEIINDCTEANVLLVATWIPHTGPV  367 (520)
Q Consensus       290 ~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg-~i~iwd~~~~~~~~~~~~~~~~~~h~~~v  367 (520)
                      ++.+ ||+|+.||+...+..+++..+...+..|++..|.|..+++|+.|. .|.+|++.++      +.+-.+.||.+||
T Consensus       408 lssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG------qllDiLsGHEgPV  481 (893)
T KOG0291|consen  408 LSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG------QLLDILSGHEGPV  481 (893)
T ss_pred             EEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC------eeeehhcCCCCcc
Confidence            9999 999999999999999999877777889999999999999999886 4999999999      7899999999999


Q ss_pred             EEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeE
Q 009993          368 NSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIV  445 (520)
Q Consensus       368 ~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v  445 (520)
                      .+++|+|  +.|++||.|.+|++||+-.....                 ....-..|.....++.|+|+.|+++..||.|
T Consensus       482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~-----------------vEtl~i~sdvl~vsfrPdG~elaVaTldgqI  544 (893)
T KOG0291|consen  482 SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT-----------------VETLEIRSDVLAVSFRPDGKELAVATLDGQI  544 (893)
T ss_pred             eeeEEccccCeEEeccccceEEEEEeeccCce-----------------eeeEeeccceeEEEEcCCCCeEEEEEecceE
Confidence            9999976  79999999999999999753100                 0111122334445566678899999999999


Q ss_pred             EEEeCCchHhHHHHhhh---hcccc-------cchhhhhccceeeeccCCCcccccccccccCCCCCCcceeeecccCC
Q 009993          446 RIWNFSQAFEIERRARA---LRGIR-------LENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGM  514 (520)
Q Consensus       446 ~iwd~~~~~~~~~~~~~---~~~~~-------~~~~~~~~~~~~~~s~~g~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  514 (520)
                      .+||...+.++.....-   ..+-.       ......+.-+.+++|+||..|.++.        ..+..+||+-..++
T Consensus       545 tf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG--------~sn~iCiY~v~~~v  615 (893)
T KOG0291|consen  545 TFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGG--------ESNSICIYDVPEGV  615 (893)
T ss_pred             EEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecC--------CcccEEEEECchhh
Confidence            99999988776322111   01100       0111123457889999999887765        33446888875443

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=6.2e-33  Score=234.71  Aligned_cols=281  Identities=20%  Similarity=0.219  Sum_probs=231.5

Q ss_pred             EEEEeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEE
Q 009993          176 SIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRI  250 (520)
Q Consensus       176 ~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l  250 (520)
                      ...++++|...|..+.   .+...+++++.|.++.+|++....        .........+.||...|..+..  ++++.
T Consensus         7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd--------~~~G~~~r~~~GHsH~v~dv~~s~dg~~a   78 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD--------IKYGVPVRRLTGHSHFVSDVVLSSDGNFA   78 (315)
T ss_pred             eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCc--------cccCceeeeeeccceEecceEEccCCceE
Confidence            4557889999999887   456799999999999999986642        1223467889999999999988  89999


Q ss_pred             EEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecC
Q 009993          251 YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH  326 (520)
Q Consensus       251 ~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~  326 (520)
                      ++++.|+++++||+.+++..+.+. |...|.+++  ++++.+++|+ |.+|.+||+............+...|.|+.|+|
T Consensus        79 lS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP  158 (315)
T KOG0279|consen   79 LSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSP  158 (315)
T ss_pred             EeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcC
Confidence            999999999999999998888887 999999988  8999999999 999999999877766665544588999999999


Q ss_pred             C--CCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCC
Q 009993          327 T--GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTS  402 (520)
Q Consensus       327 ~--~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~  402 (520)
                      +  ..+|++++.|++|++||+++.      +....+.+|++.++.+.++|  ...++|+.||.+.+||++......    
T Consensus       159 ~~~~p~Ivs~s~DktvKvWnl~~~------~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly----  228 (315)
T KOG0279|consen  159 NESNPIIVSASWDKTVKVWNLRNC------QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY----  228 (315)
T ss_pred             CCCCcEEEEccCCceEEEEccCCc------chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeE----
Confidence            8  679999999999999999999      77888999999999999976  699999999999999999753221    


Q ss_pred             CCceeeeeecCCCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeee
Q 009993          403 GKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEM  481 (520)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (520)
                                      ..+|...|.++.|.++ +.+++..+..|+|||+++...+.++.....+. ......-.-..++|
T Consensus       229 ----------------sl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaw  291 (315)
T KOG0279|consen  229 ----------------SLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAW  291 (315)
T ss_pred             ----------------eccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEE
Confidence                            2345667888888887 55555666779999999999998876665554 11222233467899


Q ss_pred             ccCCCccccc
Q 009993          482 SSKGGRTDQC  491 (520)
Q Consensus       482 s~~g~~~~~~  491 (520)
                      ++||..+.+.
T Consensus       292 s~dG~tLf~g  301 (315)
T KOG0279|consen  292 SADGQTLFAG  301 (315)
T ss_pred             cCCCcEEEee
Confidence            9999887653

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=6.8e-35  Score=264.24  Aligned_cols=284  Identities=19%  Similarity=0.295  Sum_probs=240.8

Q ss_pred             cHHHhhhhhccccccEEEEEEcc-CCCEEEEEeCCCeEEEEECCC-CcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCc
Q 009993          130 SWKELIDVLYGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLED-GFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGF  205 (520)
Q Consensus       130 ~W~~~~~~l~~h~~~V~~l~~~~-~~~~l~sgs~dg~v~vwd~~~-~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~  205 (520)
                      +-+.+++++.||+..|+++.|.| .+.+|++++.|+.|+||++-. +.+++++.+|..+|.++.  .+|..+++++.|+.
T Consensus       202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~  281 (503)
T KOG0282|consen  202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF  281 (503)
T ss_pred             ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence            35688999999999999999999 899999999999999999976 899999999999998765  78999999999999


Q ss_pred             EEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cC-CEEEEEecCCeEEEEECCCCcEEEEee-eccCEEE
Q 009993          206 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DL-TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYG  281 (520)
Q Consensus       206 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~  281 (520)
                      |++||+++|.             +...+ .-...++|+.|  ++ +.+++|+.|+.|+.||+++++.++.+. |-+.|..
T Consensus       282 lKlwDtETG~-------------~~~~f-~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~  347 (503)
T KOG0282|consen  282 LKLWDTETGQ-------------VLSRF-HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILD  347 (503)
T ss_pred             eeeeccccce-------------EEEEE-ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheee
Confidence            9999999984             22222 33456788888  33 889999999999999999999888886 8888988


Q ss_pred             Ee--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeee
Q 009993          282 LA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA  358 (520)
Q Consensus       282 ~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~  358 (520)
                      +.  ++++.+++++ |++++||+.+.+-.+..+...+.....++..+|++++++.-+.|+.|.+|.+...-   ......
T Consensus       348 i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~---r~nkkK  424 (503)
T KOG0282|consen  348 ITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF---RLNKKK  424 (503)
T ss_pred             eEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc---ccCHhh
Confidence            88  8899999999 89999999999887776655556667889999999999999999999999976542   223455


Q ss_pred             eecCCcC--CEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC
Q 009993          359 TWIPHTG--PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD  434 (520)
Q Consensus       359 ~~~~h~~--~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  434 (520)
                      .+.+|..  .-..+.|+|  .+|++|+.||.+.+||.++                   ......+..|...|..+.|.+.
T Consensus       425 ~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt-------------------~kl~~~lkah~~~ci~v~wHP~  485 (503)
T KOG0282|consen  425 RFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT-------------------TKLVSKLKAHDQPCIGVDWHPV  485 (503)
T ss_pred             hhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh-------------------hhhhhccccCCcceEEEEecCC
Confidence            6778864  445667766  7999999999999999998                   4445567788888888888765


Q ss_pred             ---EEEEecCCCeEEEEe
Q 009993          435 ---RIVCGGEEGIVRIWN  449 (520)
Q Consensus       435 ---~l~sg~~Dg~v~iwd  449 (520)
                         .+||+|.||.|++|+
T Consensus       486 e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  486 EPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             CcceeEecccCceeEecC
Confidence               999999999999996

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.6e-33  Score=246.68  Aligned_cols=313  Identities=17%  Similarity=0.190  Sum_probs=260.1

Q ss_pred             HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR  210 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd  210 (520)
                      .-..+|.+|++.|.+++.+|+.++++||+.|..-.+|++.+|.....+.+|..+|+++.  .+|.+||||..+|.|.||+
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK  134 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence            44778999999999999999999999999999999999999999999999999998866  8999999999999999999


Q ss_pred             cccCcceeeeccCCccccceEEeccCCCCeEEEEEc--CCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEE--EeeC
Q 009993          211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYG--LAPH  285 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~--~~~~  285 (520)
                      ..++.             ....+...-..+.=+.|+  +..|+.|+.||.+.+|.+.+....+.+. |..++++  +.|+
T Consensus       135 ~stg~-------------~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pd  201 (399)
T KOG0296|consen  135 VSTGG-------------EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPD  201 (399)
T ss_pred             cccCc-------------eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCC
Confidence            98874             233333344555566664  4789999999999999999977777776 8888776  4499


Q ss_pred             CCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec---
Q 009993          286 DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI---  361 (520)
Q Consensus       286 ~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~---  361 (520)
                      |+.++++. ||+|++||+.+++++..+.........++.++..+..++.|+.++.+++-+..++      +.+....   
T Consensus       202 GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg------KVv~~~n~~~  275 (399)
T KOG0296|consen  202 GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG------KVVNCNNGTV  275 (399)
T ss_pred             CceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc------eEEEecCCCC
Confidence            99999999 9999999999999999887656667889999999999999999999999888777      3444333   


Q ss_pred             -----CCcCCEEEEEecC-----CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEe
Q 009993          362 -----PHTGPVNSLAFEF-----PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI  431 (520)
Q Consensus       362 -----~h~~~v~~l~~~~-----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  431 (520)
                           .+...+.++.+.|     .+.++|+-||+|.|||+....                    .+....|...|..+.|
T Consensus       276 ~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~--------------------~R~~c~he~~V~~l~w  335 (399)
T KOG0296|consen  276 PELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST--------------------LRHICEHEDGVTKLKW  335 (399)
T ss_pred             ccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch--------------------hheeccCCCceEEEEE
Confidence                 3555566666644     688999999999999998632                    2334557778999999


Q ss_pred             cC-CEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccccc
Q 009993          432 GA-DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA  494 (520)
Q Consensus       432 ~~-~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~  494 (520)
                      .+ .+|++++.||.|+.||.++|..+..          +..++..++.++.+|+++++.+.|.+
T Consensus       336 ~~t~~l~t~c~~g~v~~wDaRtG~l~~~----------y~GH~~~Il~f~ls~~~~~vvT~s~D  389 (399)
T KOG0296|consen  336 LNTDYLLTACANGKVRQWDARTGQLKFT----------YTGHQMGILDFALSPQKRLVVTVSDD  389 (399)
T ss_pred             cCcchheeeccCceEEeeeccccceEEE----------EecCchheeEEEEcCCCcEEEEecCC
Confidence            88 5999999999999999999976544          34455667999999999999998854

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=3.5e-33  Score=244.63  Aligned_cols=305  Identities=19%  Similarity=0.239  Sum_probs=246.3

Q ss_pred             hhhhhhcCCCCCCCCCCCCCCC--cccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 009993          106 EFYCERWGLPIASAPLGAGFSD--DKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIAS  179 (520)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~--~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~  179 (520)
                      .+|+.... |. .....+|..|  ..+|+    +..-.+.||++.|+|+.|+.+|.+||||+.+|.|+||+..++.....
T Consensus        66 svFavsl~-P~-~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~  143 (399)
T KOG0296|consen   66 SVFAVSLH-PN-NNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWK  143 (399)
T ss_pred             ceEEEEeC-CC-CceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEE
Confidence            34666665 43 3333344433  47898    56778899999999999999999999999999999999999988888


Q ss_pred             eC--CCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec
Q 009993          180 SK--PLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW  255 (520)
Q Consensus       180 ~~--~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~  255 (520)
                      +.  .....-.++.|.+..|++|+.||.+-+|.+...             .....+.||+.++++=.|  +|++++++..
T Consensus       144 ~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-------------~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~  210 (399)
T KOG0296|consen  144 LDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-------------ALCKVMSGHNSPCTCGEFIPDGKRILTGYD  210 (399)
T ss_pred             eecccCceEEEEecccccEEEeecCCCcEEEEECCCc-------------ceeeEecCCCCCcccccccCCCceEEEEec
Confidence            74  333344566799999999999999999998653             356678899999999998  8999999999


Q ss_pred             CCeEEEEECCCCcEEEEee--e--ccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeec-------ccccceEEEE
Q 009993          256 DMTVRVWDRALLKCLKVLR--H--SDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNG-------AHVGNTKSLA  323 (520)
Q Consensus       256 dg~v~iwd~~~~~~~~~~~--~--~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~-------~~~~~i~~l~  323 (520)
                      ||+|++||..+++++..+.  .  ..+..++...+..++.|+ ++.+++.+..+|+.+.....       .+...+.++.
T Consensus       211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve  290 (399)
T KOG0296|consen  211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE  290 (399)
T ss_pred             CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence            9999999999999998887  2  233344447788888888 89999999888887766652       3444555555


Q ss_pred             ecC---CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcccccCC
Q 009993          324 RSH---TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGR  399 (520)
Q Consensus       324 ~s~---~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~  399 (520)
                      +.|   .-.+.|+|+.||+|.|||+...       .++..-.|..+|+.+.|.+ .+|++++.||.|+.||.++      
T Consensus       291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~-------~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRt------  357 (399)
T KOG0296|consen  291 SIPSSSKLPLAACGSVDGTIAIYDLAAS-------TLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDART------  357 (399)
T ss_pred             hcccccccchhhcccccceEEEEecccc-------hhheeccCCCceEEEEEcCcchheeeccCceEEeeeccc------
Confidence            544   5568899999999999999887       2344457889999999987 8999999999999999999      


Q ss_pred             CCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEEecCCCeEEEEeCC
Q 009993          400 PTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~  451 (520)
                                   ..+...+.||...|+++...++  +++|+|.|++.+||++.
T Consensus       358 -------------G~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  358 -------------GQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             -------------cceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence                         4555668899999988886654  99999999999999875

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.6e-34  Score=249.38  Aligned_cols=249  Identities=25%  Similarity=0.316  Sum_probs=224.6

Q ss_pred             CCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCC-CcEEEEeCCCCceEEEEe--cCCC
Q 009993          123 AGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED-GFSIASSKPLGCTIRAVA--ADKK  195 (520)
Q Consensus       123 ~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~-~~~~~~~~~~~~~v~~~~--~~~~  195 (520)
                      +.+...+.|+    ++.+.|+||++.|..++|+..|+++++++.|-.+++||.++ .++++...+|...|.++.  |.|.
T Consensus       127 s~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd  206 (406)
T KOG0295|consen  127 SEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD  206 (406)
T ss_pred             cCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCC
Confidence            3466678898    78999999999999999999999999999999999999987 567777888877777665  9999


Q ss_pred             EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEe
Q 009993          196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL  273 (520)
Q Consensus       196 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~  273 (520)
                      ++++++.|.+|+.|++.++.             ++.++.+|...|..+..  ||..+++++.|.+|++|-+.++++...+
T Consensus       207 ~ilS~srD~tik~We~~tg~-------------cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~l  273 (406)
T KOG0295|consen  207 HILSCSRDNTIKAWECDTGY-------------CVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAEL  273 (406)
T ss_pred             eeeecccccceeEEecccce-------------eEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhh
Confidence            99999999999999998874             77889999999999999  7889999999999999999999888888


Q ss_pred             e-eccCEEEEe--e---------------CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEE
Q 009993          274 R-HSDWVYGLA--P---------------HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG  334 (520)
Q Consensus       274 ~-~~~~v~~~~--~---------------~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg  334 (520)
                      + |..+|.+++  |               .+.++.+++ |++|++||+.++.++.++. +|...|..++|+|.|++|+++
T Consensus       274 R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~-ghdnwVr~~af~p~Gkyi~Sc  352 (406)
T KOG0295|consen  274 REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV-GHDNWVRGVAFSPGGKYILSC  352 (406)
T ss_pred             hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe-cccceeeeeEEcCCCeEEEEE
Confidence            7 777777765  1               135888999 9999999999999999998 799999999999999999999


Q ss_pred             eCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeC
Q 009993          335 GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDV  391 (520)
Q Consensus       335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~  391 (520)
                      .+|+++++||+++.      .+..++..|..-|++++|+.  .++++|+-|.++++|.-
T Consensus       353 aDDktlrvwdl~~~------~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  353 ADDKTLRVWDLKNL------QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             ecCCcEEEEEeccc------eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            99999999999999      89999999999999999964  69999999999999974

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.2e-32  Score=271.59  Aligned_cols=284  Identities=24%  Similarity=0.397  Sum_probs=238.2

Q ss_pred             ccHHHhhhhhccc-cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc--EEEEeCCCCceEEEEe--cCCCEEEEEeCC
Q 009993          129 KSWKELIDVLYGH-TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVA--ADKKLLVAGGTD  203 (520)
Q Consensus       129 ~~W~~~~~~l~~h-~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~--~~~~~l~sg~~d  203 (520)
                      +.|.. ...+.+| ...|+++.|+++|+.+++++.|+.+++|+..++.  ....+.+|...|..+.  +++.++++|+.|
T Consensus       146 ~~~~~-~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D  224 (456)
T KOG0266|consen  146 RVFSL-EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDD  224 (456)
T ss_pred             cccee-eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCC
Confidence            45555 6666665 8999999999999999999999999999998777  6777788888887665  999999999999


Q ss_pred             CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEE
Q 009993          204 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVY  280 (520)
Q Consensus       204 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~  280 (520)
                      ++|++||+...            ......+.+|...|++++|  +++.+++|+.|++|++||+++++++..+. |.+.|.
T Consensus       225 ~tiriwd~~~~------------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is  292 (456)
T KOG0266|consen  225 KTLRIWDLKDD------------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS  292 (456)
T ss_pred             ceEEEeeccCC------------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence            99999998433            2467788899999999999  66899999999999999999999999998 899999


Q ss_pred             EEe--eCCCEEEEEc-CCeEEEEECCCCe--eeEEeeccccc--ceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccc
Q 009993          281 GLA--PHDTTVASTS-GSDVYIWDTNSGC--LLTVVNGAHVG--NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN  353 (520)
Q Consensus       281 ~~~--~~~~~l~~~~-d~~i~iwd~~~~~--~~~~~~~~~~~--~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~  353 (520)
                      +++  ++++++++++ |+.|++||+.++.  +...+.. +..  ++++++|+|++.++++++.|+.+++||+...     
T Consensus       293 ~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~-----  366 (456)
T KOG0266|consen  293 GLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSG-AENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG-----  366 (456)
T ss_pred             EEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccC-CCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC-----
Confidence            887  8999999999 9999999999999  4566653 433  5999999999999999999999999999998     


Q ss_pred             eeeeeeecCCcCCEEEEEe-----cCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCc-ceeeE
Q 009993          354 VLLVATWIPHTGPVNSLAF-----EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF-ECNLL  427 (520)
Q Consensus       354 ~~~~~~~~~h~~~v~~l~~-----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~  427 (520)
                       ..+..+.+|...++++.-     .+.++++|+.|+.|.+||+.++                   .....+.+| ...+.
T Consensus       367 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-------------------~~~~~l~~h~~~~~~  426 (456)
T KOG0266|consen  367 -KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG-------------------GILQRLEGHSKAAVS  426 (456)
T ss_pred             -cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc-------------------chhhhhcCCCCCcee
Confidence             778888888876544421     2479999999999999999973                   333445566 55555


Q ss_pred             EEEec--CCEEEEec--CCCeEEEEeCC
Q 009993          428 SVDIG--ADRIVCGG--EEGIVRIWNFS  451 (520)
Q Consensus       428 ~~~~~--~~~l~sg~--~Dg~v~iwd~~  451 (520)
                      .+.++  ..++++++  .|+.+++|...
T Consensus       427 ~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  427 DLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             ccccCCCcCeeeecCcCCCceEEEecCC
Confidence            55544  45888888  79999999765

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.1e-31  Score=284.66  Aligned_cols=291  Identities=13%  Similarity=0.188  Sum_probs=223.3

Q ss_pred             hhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC----c----EEEEeCCCCceEEEEe---cCCCEEEEEeCCCc
Q 009993          137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG----F----SIASSKPLGCTIRAVA---ADKKLLVAGGTDGF  205 (520)
Q Consensus       137 ~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~----~----~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~  205 (520)
                      .+.+|.+.|++++|+|+|++|++|+.|++|+||++.+.    .    ....+.. ...+.++.   +.+.+|++++.||+
T Consensus       478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~  556 (793)
T PLN00181        478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEGV  556 (793)
T ss_pred             cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCCCe
Confidence            35569999999999999999999999999999997542    1    1222222 23444444   35789999999999


Q ss_pred             EEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEE
Q 009993          206 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGL  282 (520)
Q Consensus       206 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~  282 (520)
                      |++||+.++.             ....+.+|.+.|++++|   ++.+|++|+.||+|++||++++..+..+.+...+.++
T Consensus       557 v~lWd~~~~~-------------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v  623 (793)
T PLN00181        557 VQVWDVARSQ-------------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCV  623 (793)
T ss_pred             EEEEECCCCe-------------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEE
Confidence            9999987652             45567799999999999   3578999999999999999999998888866778887


Q ss_pred             e---eCCCEEEEEc-CCeEEEEECCCCe-eeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeee
Q 009993          283 A---PHDTTVASTS-GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV  357 (520)
Q Consensus       283 ~---~~~~~l~~~~-d~~i~iwd~~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~  357 (520)
                      .   +++.++++|+ |+.|++||++++. .+..+. +|...|.++.|. ++.+|++++.|++|++||++.........++
T Consensus       624 ~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l  701 (793)
T PLN00181        624 QFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-GHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPL  701 (793)
T ss_pred             EEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-CCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcce
Confidence            6   4688999999 9999999998875 345554 799999999997 6889999999999999999864322223567


Q ss_pred             eeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCC-cccccCcceeeEEEEec--
Q 009993          358 ATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPP-QRMLHGFECNLLSVDIG--  432 (520)
Q Consensus       358 ~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~--  432 (520)
                      ..+.+|...++++.|++  .+|++|+.|+.|++|+.............       ..... ......+...|.++.|+  
T Consensus       702 ~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~-------~~~~~~~~~~~~~~~~V~~v~ws~~  774 (793)
T PLN00181        702 HSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFK-------TIDPVSGLEVDDASQFISSVCWRGQ  774 (793)
T ss_pred             EEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecc-------cCCcccccccCCCCcEEEEEEEcCC
Confidence            78899999999999975  79999999999999998654211100000       00000 01123344556666655  


Q ss_pred             CCEEEEecCCCeEEEEeC
Q 009993          433 ADRIVCGGEEGIVRIWNF  450 (520)
Q Consensus       433 ~~~l~sg~~Dg~v~iwd~  450 (520)
                      +..|++|+.||.|+||++
T Consensus       775 ~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        775 SSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCeEEEecCCCcEEEEec
Confidence            459999999999999986

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.6e-31  Score=242.27  Aligned_cols=351  Identities=19%  Similarity=0.207  Sum_probs=268.6

Q ss_pred             ccHH--HhhhhhccccccEEEEEEccCCC-EEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCC
Q 009993          129 KSWK--ELIDVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTD  203 (520)
Q Consensus       129 ~~W~--~~~~~l~~h~~~V~~l~~~~~~~-~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~d  203 (520)
                      ..|+  .-+-.+.||...|.+++|-|... +++||+.|++|.+|+-..-+...++..|...|.++.  |||.++++++.|
T Consensus       132 F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsD  211 (603)
T KOG0318|consen  132 FLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSD  211 (603)
T ss_pred             EEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCC
Confidence            3355  34677899999999999998754 699999999999999877778888889998888765  999999999999


Q ss_pred             CcEEEEEcccCcceeeeccCCccccceEEe---ccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeeccC
Q 009993          204 GFIHCWRAVEVLPHLFDISGSEKQNTQFRL---WEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDW  278 (520)
Q Consensus       204 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~  278 (520)
                      |+|.+||=.+++             .+..+   .+|.+.|.+++|  |+..+++++.|.+++|||+.+.++++++.....
T Consensus       212 gki~iyDGktge-------------~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~  278 (603)
T KOG0318|consen  212 GKIYIYDGKTGE-------------KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST  278 (603)
T ss_pred             ccEEEEcCCCcc-------------EEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCc
Confidence            999999988874             22333   389999999999  779999999999999999999999999974333


Q ss_pred             -----EEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccc
Q 009993          279 -----VYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA  352 (520)
Q Consensus       279 -----v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~  352 (520)
                           |-++-. +..|++.+ +|.|.++++..+..+..+. +|...|+++..+|++++|++|+.||.|.-|+...+..  
T Consensus       279 v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~-GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~--  354 (603)
T KOG0318|consen  279 VEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVIS-GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS--  354 (603)
T ss_pred             hhceEEEEEEe-CCeEEEEEcCcEEEEecccCCChhheec-ccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc--
Confidence                 444446 55555555 9999999999999777776 7999999999999999999999999999999988831  


Q ss_pred             ceeeeeeecCCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcccccCCC--CCC---Cce-------eeee---------
Q 009993          353 NVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRP--TSG---KRV-------SRVI---------  410 (520)
Q Consensus       353 ~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~---~~~-------~~~~---------  410 (520)
                         ....-.+|...|.+++.+. ..+++.+.|.++++.++.........  ..+   ..+       ..+.         
T Consensus       355 ---~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l  431 (603)
T KOG0318|consen  355 ---DRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLL  431 (603)
T ss_pred             ---cccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEE
Confidence               1122267999999999976 89999999999999988543211110  000   000       0000         


Q ss_pred             -ecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccc
Q 009993          411 -EVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTD  489 (520)
Q Consensus       411 -~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~  489 (520)
                       ........--+....+.+++++++.++.|+.||.|+||.+..+...++        .....++..++.+++||||..+|
T Consensus       432 ~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee--------~~~~~h~a~iT~vaySpd~~yla  503 (603)
T KOG0318|consen  432 QDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE--------AKLLEHRAAITDVAYSPDGAYLA  503 (603)
T ss_pred             ecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccce--------eeeecccCCceEEEECCCCcEEE
Confidence             011111122345567788889999999999999999999987654332        12234455689999999999999


Q ss_pred             ccccccccCCCCCCccee
Q 009993          490 QCSVAAKKNPMNGNRRSV  507 (520)
Q Consensus       490 ~~s~~~~~~~~~~~~~~~  507 (520)
                      ++-...+...-+..+|.+
T Consensus       504 ~~Da~rkvv~yd~~s~~~  521 (603)
T KOG0318|consen  504 AGDASRKVVLYDVASREV  521 (603)
T ss_pred             EeccCCcEEEEEcccCce
Confidence            987665554444444443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.7e-32  Score=239.41  Aligned_cols=276  Identities=18%  Similarity=0.304  Sum_probs=234.6

Q ss_pred             EEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEE
Q 009993          176 SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIY  251 (520)
Q Consensus       176 ~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~  251 (520)
                      ..+.+.+|.+.|.|+.  |.+..+++|+.|++|+|||+.++.             ...++.||...|..+++..  .|++
T Consensus       143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-------------LkltltGhi~~vr~vavS~rHpYlF  209 (460)
T KOG0285|consen  143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-------------LKLTLTGHIETVRGVAVSKRHPYLF  209 (460)
T ss_pred             ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-------------EEEeecchhheeeeeeecccCceEE
Confidence            3455678999999887  888999999999999999999874             5667889999999999944  7999


Q ss_pred             EEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCC
Q 009993          252 SGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT  327 (520)
Q Consensus       252 s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~  327 (520)
                      +++.|+.|+.||++..+.++.+. |-..|.|++  |.-..+++|+ |.++++||+++...+..+. +|..+|.++.+.|-
T Consensus       210 s~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V~~~~~  288 (460)
T KOG0285|consen  210 SAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASVMCQPT  288 (460)
T ss_pred             EecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeEEeecC
Confidence            99999999999999999888876 889999999  6788899998 9999999999999999997 79999999999998


Q ss_pred             CCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCc
Q 009993          328 GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKR  405 (520)
Q Consensus       328 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  405 (520)
                      ...+++|+.|++|++||++.+      +...++..|...|.+++.+|  ..+++++.| .|+-|++..+           
T Consensus       289 dpqvit~S~D~tvrlWDl~ag------kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g-----------  350 (460)
T KOG0285|consen  289 DPQVITGSHDSTVRLWDLRAG------KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEG-----------  350 (460)
T ss_pred             CCceEEecCCceEEEeeeccC------ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCcc-----------
Confidence            889999999999999999999      78889999999999999998  467777777 5999999874           


Q ss_pred             eeeeeecCCCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccC
Q 009993          406 VSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSK  484 (520)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  484 (520)
                              .....+.+|...+.+++.+.+ ++++|++.|.+.+||.+++............-.++  .+..++..+|...
T Consensus       351 --------~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~--sEagI~as~fDkt  420 (460)
T KOG0285|consen  351 --------EFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLE--SEAGIFASCFDKT  420 (460)
T ss_pred             --------chhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccc--cccceeEEeeccc
Confidence                    223337889999999998766 99999999999999999987665543222111111  2345788899999


Q ss_pred             CCccccccc
Q 009993          485 GGRTDQCSV  493 (520)
Q Consensus       485 g~~~~~~s~  493 (520)
                      |.+|+++-.
T Consensus       421 g~rlit~ea  429 (460)
T KOG0285|consen  421 GSRLITGEA  429 (460)
T ss_pred             CceEEeccC
Confidence            999998864

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.8e-32  Score=263.17  Aligned_cols=246  Identities=22%  Similarity=0.462  Sum_probs=210.8

Q ss_pred             ceEEEEecCCCEEEEEeCCCcEEEEEcccCcc----------ee--------eeccCCccccceEEeccCCCCeEEEEE-
Q 009993          185 CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLP----------HL--------FDISGSEKQNTQFRLWEHEGPITSLAL-  245 (520)
Q Consensus       185 ~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~----------~~--------~~~~~~~~~~~~~~~~~h~~~v~~l~~-  245 (520)
                      ..+..+++++..||.|..|..|++|.+.....          .+        .+............+.||.++|....| 
T Consensus       381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFs  460 (707)
T KOG0263|consen  381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFS  460 (707)
T ss_pred             ceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeec
Confidence            34556678999999999999999999874210          00        111122233445568999999999999 


Q ss_pred             -cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceE
Q 009993          246 -DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTK  320 (520)
Q Consensus       246 -~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~  320 (520)
                       +.++|+++|.|++||+|.+.+..++-.++ |..+|..+.  |.|.++++++ |++.++|......+++.+. +|.+.|.
T Consensus       461 Pd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa-ghlsDV~  539 (707)
T KOG0263|consen  461 PDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA-GHLSDVD  539 (707)
T ss_pred             ccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc-ccccccc
Confidence             66899999999999999999999998887 888898877  9999999999 9999999999999998887 7999999


Q ss_pred             EEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccC
Q 009993          321 SLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSG  398 (520)
Q Consensus       321 ~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~  398 (520)
                      |+.|+|+..++++||.|.++++||+.++      ..++.+.||.++|++++|+|  .+|++|+.||.|.+||+.+     
T Consensus       540 cv~FHPNs~Y~aTGSsD~tVRlWDv~~G------~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~-----  608 (707)
T KOG0263|consen  540 CVSFHPNSNYVATGSSDRTVRLWDVSTG------NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN-----  608 (707)
T ss_pred             eEEECCcccccccCCCCceEEEEEcCCC------cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC-----
Confidence            9999999999999999999999999999      78999999999999999987  7999999999999999998     


Q ss_pred             CCCCCCceeeeeecCCCcccccCcceeeEEEEec--CCEEEEecCCCeEEEEeCCchHhH
Q 009993          399 RPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQAFEI  456 (520)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~~~~~~  456 (520)
                                    ......+.+|+..+.+++|+  +..||+||.|.+|++||+......
T Consensus       609 --------------~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  609 --------------GSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL  654 (707)
T ss_pred             --------------CcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence                          45556678888888888775  559999999999999999865544

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=5.7e-32  Score=231.18  Aligned_cols=271  Identities=23%  Similarity=0.378  Sum_probs=227.2

Q ss_pred             HhhcCcchhhhhhhhhcCCCCCCCCCCCC-CCCcccHH-----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEE
Q 009993           96 RLASDHHAWKEFYCERWGLPIASAPLGAG-FSDDKSWK-----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMW  169 (520)
Q Consensus        96 ~~~~~~~lW~~~~~~~~~~~~~~~~~~~~-~~~~~~W~-----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vw  169 (520)
                      ++...|.  -++|+.+|. |+.+++..+| +...-+|+     +-..+++||+++|..+.|.+|++.|++++.|.+|+.|
T Consensus        41 m~l~gh~--geI~~~~F~-P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   41 MLLPGHK--GEIYTIKFH-PDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW  117 (338)
T ss_pred             hhcCCCc--ceEEEEEEC-CCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence            4444555  467899998 6666655544 44457898     4477889999999999999999999999999999999


Q ss_pred             ECCCCcEEEEeCCCCceEEEEec---CCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-
Q 009993          170 HLEDGFSIASSKPLGCTIRAVAA---DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-  245 (520)
Q Consensus       170 d~~~~~~~~~~~~~~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-  245 (520)
                      |+++|+.++.+++|..-+.++.|   ...++.+|+.||++++||+++..              ........-.++++.| 
T Consensus       118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~--------------~~~t~~~kyqltAv~f~  183 (338)
T KOG0265|consen  118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE--------------AIKTFENKYQLTAVGFK  183 (338)
T ss_pred             ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc--------------hhhccccceeEEEEEec
Confidence            99999999999999999888874   34578899999999999997542              1222334567899999 


Q ss_pred             -cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCC----eeeEEeecccc
Q 009993          246 -DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSG----CLLTVVNGAHV  316 (520)
Q Consensus       246 -~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~----~~~~~~~~~~~  316 (520)
                       .+..+++|+-|+.|++||++......++. |.++|+.+.  ++|.++.+-+ |.++++||++..    +++..+. +|.
T Consensus       184 d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~-g~~  262 (338)
T KOG0265|consen  184 DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQ-GHI  262 (338)
T ss_pred             ccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEee-cch
Confidence             66889999999999999999999999998 999999988  8999999999 999999999753    3455554 332


Q ss_pred             ----cceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEe
Q 009993          317 ----GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLID  390 (520)
Q Consensus       317 ----~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd  390 (520)
                          .....++|+|++..+.+|+.|..+++||....      ..+..+.||.+.|++++|+|  ..|.+++.|.+|++=+
T Consensus       263 hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r------~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  263 HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR------RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             hhhhhhcceeeccCCCCccccccccceEEEeecccc------cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence                24567789999999999999999999999887      78999999999999999998  6999999999998743

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=6.3e-32  Score=265.24  Aligned_cols=250  Identities=28%  Similarity=0.425  Sum_probs=225.6

Q ss_pred             CCcccHH----Hhhhh-hccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEE
Q 009993          126 SDDKSWK----ELIDV-LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAG  200 (520)
Q Consensus       126 ~~~~~W~----~~~~~-l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg  200 (520)
                      ...+.|+    ..+.+ |.||.+.|.++++..-+.+|++|+.|.+++|||..+|.+...+.+|...+.++...+.++++|
T Consensus       228 ~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sg  307 (537)
T KOG0274|consen  228 STLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSG  307 (537)
T ss_pred             ceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeec
Confidence            3346787    33445 999999999999987789999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee-eccCE
Q 009993          201 GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWV  279 (520)
Q Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v  279 (520)
                      +.|.+|++|++.++             .....+.+|.++|.++..+++++++|+.|++|++||..++++++++. |..+|
T Consensus       308 s~D~tVkVW~v~n~-------------~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V  374 (537)
T KOG0274|consen  308 SRDNTVKVWDVTNG-------------ACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRV  374 (537)
T ss_pred             cCCceEEEEeccCc-------------ceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceE
Confidence            99999999999865             35666777999999999999999999999999999999999999998 99999


Q ss_pred             EEEeeCC-CEEEEEc-CCeEEEEECCCC-eeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceee
Q 009993          280 YGLAPHD-TTVASTS-GSDVYIWDTNSG-CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL  356 (520)
Q Consensus       280 ~~~~~~~-~~l~~~~-d~~i~iwd~~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~  356 (520)
                      .++..++ ..+++|+ |++|++||+++. +++..+. +|..-+..+.+  .+++|++++.|++|++||..++      .+
T Consensus       375 ~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~-~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~------~~  445 (537)
T KOG0274|consen  375 YSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQ-GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEG------EC  445 (537)
T ss_pred             EEEEecCcceEEeeeeccceEeecCCchhhhhhhhc-CCccccccccc--ccceeEeccccccEEEeecccC------ce
Confidence            9999888 9999999 999999999999 8888887 68888866665  6789999999999999999999      78


Q ss_pred             eeeecC-CcCCEEEEEecCCEEEEEeCCCcEEEEeCCccccc
Q 009993          357 VATWIP-HTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRS  397 (520)
Q Consensus       357 ~~~~~~-h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~  397 (520)
                      +.++.+ |.+.|.++++....+++++.||++++||++++...
T Consensus       446 ~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~  487 (537)
T KOG0274|consen  446 LRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLI  487 (537)
T ss_pred             eeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchh
Confidence            888888 78899999998789999999999999999986433

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.1e-32  Score=260.29  Aligned_cols=243  Identities=22%  Similarity=0.322  Sum_probs=216.2

Q ss_pred             hhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEccc
Q 009993          136 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVE  213 (520)
Q Consensus       136 ~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~  213 (520)
                      ..++..+..|..++|+|...+++++-..|.|++||..-+.++..|..|.++|..+.  |.+.++++|+.|-.|+||+..+
T Consensus         3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~   82 (1202)
T KOG0292|consen    3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT   82 (1202)
T ss_pred             chhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence            34667788999999999999999999999999999999999999999999998766  8999999999999999999866


Q ss_pred             CcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCE
Q 009993          214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTT  288 (520)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~  288 (520)
                      .             .+.+++.||-+.|+.+.|+.  .+++|+|.|.+|+||+..+++++..+. |...|+|..  |...+
T Consensus        83 r-------------rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDl  149 (1202)
T KOG0292|consen   83 R-------------RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDL  149 (1202)
T ss_pred             c-------------eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccce
Confidence            4             57889999999999999954  679999999999999999999999998 999999988  77889


Q ss_pred             EEEEc-CCeEEEEECCCCe----------------------------eeEEeecccccceEEEEecCCCCEEEEEeCCCe
Q 009993          289 VASTS-GSDVYIWDTNSGC----------------------------LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA  339 (520)
Q Consensus       289 l~~~~-d~~i~iwd~~~~~----------------------------~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~  339 (520)
                      +++++ |.+|++||+..-+                            .++.+..||...|+-++|+|.-.++++|++|..
T Consensus       150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq  229 (1202)
T KOG0292|consen  150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ  229 (1202)
T ss_pred             EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce
Confidence            99999 9999999985311                            123333589999999999999999999999999


Q ss_pred             EEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCccc
Q 009993          340 IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLL  395 (520)
Q Consensus       340 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~  395 (520)
                      |++|.+.....    -.+-+..+|.+.|.++-|+|  +.+++.|.|++|+|||+....
T Consensus       230 VKlWrmnetKa----WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt  283 (1202)
T KOG0292|consen  230 VKLWRMNETKA----WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT  283 (1202)
T ss_pred             eeEEEeccccc----eeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc
Confidence            99999876632    45777889999999999999  799999999999999998743

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.4e-33  Score=247.88  Aligned_cols=265  Identities=20%  Similarity=0.284  Sum_probs=223.0

Q ss_pred             hhhhcCCCC-CCCCCCCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC
Q 009993          108 YCERWGLPI-ASAPLGAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP  182 (520)
Q Consensus       108 ~~~~~~~~~-~~~~~~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~  182 (520)
                      +..+|. |. .++..++......+|+    ..-..++.|..+|.++.|+++|.+++||+.+|.|++|+..- ..++.++.
T Consensus       100 ~~v~Wt-PeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~a  177 (464)
T KOG0284|consen  100 NVVRWT-PEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQA  177 (464)
T ss_pred             eeEEEc-CCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhH
Confidence            445676 45 4556666677778999    44566789999999999999999999999999999999753 44444554


Q ss_pred             C-CceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCC
Q 009993          183 L-GCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDM  257 (520)
Q Consensus       183 ~-~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg  257 (520)
                      | ...|++++  |+...+++++.||+|+|||....             .....+.+|.-.|.+++|++  ..+++||.|.
T Consensus       178 hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~-------------kee~vL~GHgwdVksvdWHP~kgLiasgskDn  244 (464)
T KOG0284|consen  178 HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP-------------KEERVLRGHGWDVKSVDWHPTKGLIASGSKDN  244 (464)
T ss_pred             hhhhhhheeccCCCCceeEEecCCCeEEEEeccCC-------------chhheeccCCCCcceeccCCccceeEEccCCc
Confidence            4 46776655  88999999999999999998654             24556789999999999955  7899999999


Q ss_pred             eEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecC-CCCEEE
Q 009993          258 TVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH-TGDFLF  332 (520)
Q Consensus       258 ~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~  332 (520)
                      .|++||.++++|+.++. |...|..+.  +++++|++++ |..++++|+++.+.+..+. +|...++++.|+| ...+|.
T Consensus       245 lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r-~Hkkdv~~~~WhP~~~~lft  323 (464)
T KOG0284|consen  245 LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR-GHKKDVTSLTWHPLNESLFT  323 (464)
T ss_pred             eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh-cchhhheeecccccccccee
Confidence            99999999999999987 999999988  8899999999 9999999999888888887 7999999999999 567888


Q ss_pred             EEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993          333 TGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       333 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  393 (520)
                      +|+.||.|..|.+....     .....-.+|...|++++|+|  ..|++|+.|.++++|.-..
T Consensus       324 sgg~Dgsvvh~~v~~~~-----p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r  381 (464)
T KOG0284|consen  324 SGGSDGSVVHWVVGLEE-----PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR  381 (464)
T ss_pred             eccCCCceEEEeccccc-----cccCCCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence            99999999999998552     12222347999999999998  6899999999999998654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=6.2e-33  Score=251.54  Aligned_cols=270  Identities=21%  Similarity=0.304  Sum_probs=225.0

Q ss_pred             hcCcchhhhhhhhhcCCCCCCCCCCCCCC--CcccHH-----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEE
Q 009993           98 ASDHHAWKEFYCERWGLPIASAPLGAGFS--DDKSWK-----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWH  170 (520)
Q Consensus        98 ~~~~~lW~~~~~~~~~~~~~~~~~~~~~~--~~~~W~-----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd  170 (520)
                      ..+|.  +.+.+.+|- |....++.++..  ..++|+     .+++++.||..+|..++|+++|..++|+|.|+.|++||
T Consensus       210 ~~gH~--kgvsai~~f-p~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD  286 (503)
T KOG0282|consen  210 LSGHT--KGVSAIQWF-PKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD  286 (503)
T ss_pred             ccCCc--cccchhhhc-cceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence            34555  556777775 544444444444  458887     78999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEeC-CCCceEEEEecCC-CEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--c
Q 009993          171 LEDGFSIASSK-PLGCTIRAVAADK-KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D  246 (520)
Q Consensus       171 ~~~~~~~~~~~-~~~~~v~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~  246 (520)
                      +++|+++..+. ++...+..+.|++ +.+++|+.|+.|+.||+++++             .+..+..|-+.|..+.|  +
T Consensus       287 tETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-------------vvqeYd~hLg~i~~i~F~~~  353 (503)
T KOG0282|consen  287 TETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-------------VVQEYDRHLGAILDITFVDE  353 (503)
T ss_pred             cccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-------------HHHHHHhhhhheeeeEEccC
Confidence            99999998886 4455566667887 899999999999999998873             55667789999999999  8


Q ss_pred             CCEEEEEecCCeEEEEECCCCcEEEEee----eccCEEEEeeCCCEEEEEc-CCeEEEEECCCCe---eeEEeecccc--
Q 009993          247 LTRIYSGSWDMTVRVWDRALLKCLKVLR----HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGC---LLTVVNGAHV--  316 (520)
Q Consensus       247 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~---~~~~~~~~~~--  316 (520)
                      +.++++.+.|++++||+.+.+..++.+.    |.-+...+.|++.++++-+ |+.|.+|.+...-   ....+. +|.  
T Consensus       354 g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~fe-Gh~va  432 (503)
T KOG0282|consen  354 GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFE-GHSVA  432 (503)
T ss_pred             CceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhc-ceecc
Confidence            8999999999999999999887776654    6666666779999999988 9999999875432   222333 563  


Q ss_pred             cceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEe
Q 009993          317 GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLID  390 (520)
Q Consensus       317 ~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd  390 (520)
                      +.-..+.|||||.+|++|+.||.+.+||.++.      +.+..+..|.+++..+.|+|   ..+++++.||.|++||
T Consensus       433 Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~------kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  433 GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT------KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             CceeeEEEcCCCCeEEeecCCccEEEeechhh------hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            45567889999999999999999999999998      78999999999999999987   6999999999999996

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7.2e-31  Score=249.82  Aligned_cols=358  Identities=18%  Similarity=0.310  Sum_probs=282.7

Q ss_pred             hhhhhhhcCCCCCCCCCCCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 009993          105 KEFYCERWGLPIASAPLGAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS  180 (520)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~  180 (520)
                      +++.+.+|.....++.+++.+.+.-.|+    .-.-.|+||++.|+..-|..+.+++++.|.|+.|++||+++..+..+.
T Consensus       108 ~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Th  187 (888)
T KOG0306|consen  108 AAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETH  187 (888)
T ss_pred             cceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEE
Confidence            4555666664445555666677778899    336678999999999999988899999999999999999999999999


Q ss_pred             CCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCc------------------------c--------------------
Q 009993          181 KPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVL------------------------P--------------------  216 (520)
Q Consensus       181 ~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~------------------------~--------------------  216 (520)
                      ..|...+.++..+++.+++++.|+.+++|++....                        .                    
T Consensus       188 vd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~  267 (888)
T KOG0306|consen  188 VDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKV  267 (888)
T ss_pred             ecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhh
Confidence            99999999999888999999999999999881100                        0                    


Q ss_pred             -------------------------------------------------------------------------------e
Q 009993          217 -------------------------------------------------------------------------------H  217 (520)
Q Consensus       217 -------------------------------------------------------------------------------~  217 (520)
                                                                                                     +
T Consensus       268 ~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~  347 (888)
T KOG0306|consen  268 IELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVE  347 (888)
T ss_pred             hhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceE
Confidence                                                                                           0


Q ss_pred             eeeccCCc------cccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEE--EeeCCCE
Q 009993          218 LFDISGSE------KQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYG--LAPHDTT  288 (520)
Q Consensus       218 ~~~~~~~~------~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~--~~~~~~~  288 (520)
                      .+.+..+.      .......+.+|...|.++++ +.+.++..+..+.+++|+..+.++++++... .+.+  +.|.+++
T Consensus       348 ~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~  426 (888)
T KOG0306|consen  348 WYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRY  426 (888)
T ss_pred             EEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-cEEEEEecCCCce
Confidence            00000000      00112456689999999999 3344444444679999999999999999866 3433  3399999


Q ss_pred             EEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcc-----------------
Q 009993          289 VASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT-----------------  350 (520)
Q Consensus       289 l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~-----------------  350 (520)
                      ++.|. .|.+.+||+.+...+.++. +|.+.|++++.+||+..+++|+.|.+|++||..-...                 
T Consensus       427 Iv~G~k~Gel~vfdlaS~~l~Eti~-AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL  505 (888)
T KOG0306|consen  427 IVLGTKNGELQVFDLASASLVETIR-AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL  505 (888)
T ss_pred             EEEeccCCceEEEEeehhhhhhhhh-ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE
Confidence            99999 8999999999999888887 7999999999999999999999999999999742111                 


Q ss_pred             -------------------------------ccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCccccc
Q 009993          351 -------------------------------EANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRS  397 (520)
Q Consensus       351 -------------------------------~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~  397 (520)
                                                     ....+....+.||.-||.|+..+|  ..++|||.|.+|+||-+.=    
T Consensus       506 el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdF----  581 (888)
T KOG0306|consen  506 ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDF----  581 (888)
T ss_pred             eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEecccc----
Confidence                                           001233445678999999999866  7999999999999998865    


Q ss_pred             CCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhc
Q 009993          398 GRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRR  475 (520)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (520)
                                     ..+.+.+.+|..+|+++.|-++  .+.|+|.||.|+-||-..=..+..          ...+..+
T Consensus       582 ---------------GDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~----------L~~H~~e  636 (888)
T KOG0306|consen  582 ---------------GDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQK----------LDGHHSE  636 (888)
T ss_pred             ---------------chhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhhee----------eccchhe
Confidence                           5677788999999999998887  899999999999999876554443          3344555


Q ss_pred             cceeeeccCCCccccccc
Q 009993          476 KLQTEMSSKGGRTDQCSV  493 (520)
Q Consensus       476 ~~~~~~s~~g~~~~~~s~  493 (520)
                      +...+++|+|+...++|-
T Consensus       637 v~cLav~~~G~~vvs~sh  654 (888)
T KOG0306|consen  637 VWCLAVSPNGSFVVSSSH  654 (888)
T ss_pred             eeeeEEcCCCCeEEeccC
Confidence            789999999999999883

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.6e-31  Score=251.11  Aligned_cols=278  Identities=18%  Similarity=0.260  Sum_probs=237.3

Q ss_pred             hhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCc
Q 009993          136 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVL  215 (520)
Q Consensus       136 ~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~  215 (520)
                      -++.||...|.+++++.+...++||+ .+.+++|+..+.++++++...-.-..++.|.++++++|...|.+.++|+.+..
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~  445 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASAS  445 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence            35679999999999998888777776 56799999999999999987644445566999999999999999999987652


Q ss_pred             ceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCC-----CcE--------EEEeeeccCEE
Q 009993          216 PHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL-----LKC--------LKVLRHSDWVY  280 (520)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~-----~~~--------~~~~~~~~~v~  280 (520)
                                   .......|.+.|.+++.  |+..+++||.|.+|++||+.-     +..        .+++..++.|.
T Consensus       446 -------------l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL  512 (888)
T KOG0306|consen  446 -------------LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVL  512 (888)
T ss_pred             -------------hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEE
Confidence                         34455689999999999  888999999999999999741     111        13334677888


Q ss_pred             EEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeee
Q 009993          281 GLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV  357 (520)
Q Consensus       281 ~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~  357 (520)
                      |++  |++++++++- |++|+||-+.+.+....+. ||.-||.||..+||++.++||+.|..|+||-+.-+      .+.
T Consensus       513 ~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY-GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG------DCH  585 (888)
T KOG0306|consen  513 CVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY-GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG------DCH  585 (888)
T ss_pred             EEEEcCCCcEEEEEeccCeEEEEEecceeeeeeec-ccccceeEEeccCCcCeEEeccCCCceEEeccccc------hhh
Confidence            877  9999999999 9999999999998887776 79999999999999999999999999999999999      789


Q ss_pred             eeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEE--ecC
Q 009993          358 ATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD--IGA  433 (520)
Q Consensus       358 ~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~  433 (520)
                      ..+.+|.+.|.++.|-|  ..++++|.|+.|+-||-.+.                   ...+.+.+|...|+|++  ++|
T Consensus       586 KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF-------------------e~iq~L~~H~~ev~cLav~~~G  646 (888)
T KOG0306|consen  586 KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF-------------------EEIQKLDGHHSEVWCLAVSPNG  646 (888)
T ss_pred             hhhhcccCceeEEEEcccceeEEEecCcceEEeechhhh-------------------hhheeeccchheeeeeEEcCCC
Confidence            99999999999999987  58999999999999998873                   44555778887776665  566


Q ss_pred             CEEEEecCCCeEEEEeCCch
Q 009993          434 DRIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       434 ~~l~sg~~Dg~v~iwd~~~~  453 (520)
                      .+++++|.|.+||+|.-...
T Consensus       647 ~~vvs~shD~sIRlwE~tde  666 (888)
T KOG0306|consen  647 SFVVSSSHDKSIRLWERTDE  666 (888)
T ss_pred             CeEEeccCCceeEeeeccCc
Confidence            69999999999999997763

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-31  Score=249.08  Aligned_cols=262  Identities=17%  Similarity=0.197  Sum_probs=226.8

Q ss_pred             hhhhhcCCCCCCCCCC-CCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC
Q 009993          107 FYCERWGLPIASAPLG-AGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK  181 (520)
Q Consensus       107 ~~~~~~~~~~~~~~~~-~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~  181 (520)
                      +-|..++ |..+-.+. --..+..+|+    .+++.+.-..-+|.+..|-+-.+++++|+.|..|+||+..+++.+..|.
T Consensus        16 VKsVd~H-PtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~Fe   94 (794)
T KOG0276|consen   16 VKSVDFH-PTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFE   94 (794)
T ss_pred             eeeeecC-CCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEee
Confidence            3455565 33332222 2245668898    5677778888999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecC
Q 009993          182 PLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWD  256 (520)
Q Consensus       182 ~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~d  256 (520)
                      .|...|+++.  |...+++++|.|-+|++||.+..            ..+...+.||+..|.+++|   |.+.+++++-|
T Consensus        95 AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~------------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLD  162 (794)
T KOG0276|consen   95 AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE------------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLD  162 (794)
T ss_pred             ccccceeeeeecCCCCeEEecCCccEEEEeeccCc------------eeeeeEEcCcceEEEEEEecCCCccceeeeecc
Confidence            9999999887  88999999999999999999765            5688899999999999999   66899999999


Q ss_pred             CeEEEEECCCCcEEEEee-eccCEEEEe----eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCE
Q 009993          257 MTVRVWDRALLKCLKVLR-HSDWVYGLA----PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDF  330 (520)
Q Consensus       257 g~v~iwd~~~~~~~~~~~-~~~~v~~~~----~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~  330 (520)
                      ++|++|.+.+..+..++. |...|+|+.    .+..++++|+ |.+++|||..+..+++++. ||...|..+.|+|.-.+
T Consensus       163 rTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe-GHt~Nvs~v~fhp~lpi  241 (794)
T KOG0276|consen  163 RTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE-GHTNNVSFVFFHPELPI  241 (794)
T ss_pred             ccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh-cccccceEEEecCCCcE
Confidence            999999999999999987 999999999    4556999999 8999999999999999998 79999999999999999


Q ss_pred             EEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEE
Q 009993          331 LFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSL  388 (520)
Q Consensus       331 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~v  388 (520)
                      +++|++||+++||+..+-      +...++.-.-..|+|++..+  +.++.|.++|.|.+
T Consensus       242 iisgsEDGTvriWhs~Ty------~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  242 IISGSEDGTVRIWNSKTY------KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             EEEecCCccEEEecCcce------ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            999999999999998887      55666666678899999743  67888888887755

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.98  E-value=5.7e-31  Score=231.85  Aligned_cols=264  Identities=20%  Similarity=0.320  Sum_probs=218.8

Q ss_pred             CCCcccHH---HhhhhhccccccEEEEEEccCC---CEEEEEeCCCeEEEEECCCCcEE----EEeCCCCceEEEEe--c
Q 009993          125 FSDDKSWK---ELIDVLYGHTEAVLTVFVLASA---KLLFTSGYDSIVRMWHLEDGFSI----ASSKPLGCTIRAVA--A  192 (520)
Q Consensus       125 ~~~~~~W~---~~~~~l~~h~~~V~~l~~~~~~---~~l~sgs~dg~v~vwd~~~~~~~----~~~~~~~~~v~~~~--~  192 (520)
                      +...++|+   +.+.++.||+++|.+++|....   ..++++|.|.++++|..+.++..    ....+|...|-+++  +
T Consensus       124 Dg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~  203 (423)
T KOG0313|consen  124 DGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS  203 (423)
T ss_pred             CCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecC
Confidence            45569998   7788999999999988886433   36999999999999999877543    33459999998887  8


Q ss_pred             CCCEEEEEeCCCcEEEEEcccCcceeee------------ccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeE
Q 009993          193 DKKLLVAGGTDGFIHCWRAVEVLPHLFD------------ISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTV  259 (520)
Q Consensus       193 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~------------~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v  259 (520)
                      ++..+++|+.|.+|++|+..+.....+.            ........+...+.||..+|.++.| +...+++++.|.+|
T Consensus       204 sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTI  283 (423)
T KOG0313|consen  204 SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTI  283 (423)
T ss_pred             CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceE
Confidence            9999999999999999994332211111            0112234567889999999999999 77889999999999


Q ss_pred             EEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCe--eeEEeecccccceEEEEecCCC-CEEEE
Q 009993          260 RVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGC--LLTVVNGAHVGNTKSLARSHTG-DFLFT  333 (520)
Q Consensus       260 ~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~--~~~~~~~~~~~~i~~l~~s~~~-~~l~t  333 (520)
                      +.||+.++.++..+..+..+++++  +..++|++|+ |..+++||++++.  .+..-..+|.+.|.++.|+|.. ..|++
T Consensus       284 k~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S  363 (423)
T KOG0313|consen  284 KVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVS  363 (423)
T ss_pred             EEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEE
Confidence            999999999999999999999998  7888999999 9999999999863  3333334799999999999965 46889


Q ss_pred             EeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCc
Q 009993          334 GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       334 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~  393 (520)
                      |+.|+++++||++...     .++..+.+|...|.++.|+. ..+++|+.|.+|+|+.-..
T Consensus       364 ~S~D~t~klWDvRS~k-----~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~~  419 (423)
T KOG0313|consen  364 GSYDNTVKLWDVRSTK-----APLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGSP  419 (423)
T ss_pred             EecCCeEEEEEeccCC-----CcceeeccCCceEEEEeccCCceEEeccCcceEEEecccc
Confidence            9999999999999983     38999999999999999965 6999999999999987543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.98  E-value=1.4e-30  Score=257.09  Aligned_cols=267  Identities=26%  Similarity=0.410  Sum_probs=226.2

Q ss_pred             hhhhhhcCCCCCCCCCCCCCCCcccHHH------hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEEC-CCCcEEE
Q 009993          106 EFYCERWGLPIASAPLGAGFSDDKSWKE------LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHL-EDGFSIA  178 (520)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~------~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~-~~~~~~~  178 (520)
                      .+.|..|......+...+.+...++|+.      +.+.+.+|...|.+++|+|+++++++|+.|++|+|||+ ..+..++
T Consensus       161 sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~  240 (456)
T KOG0266|consen  161 SVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLK  240 (456)
T ss_pred             ceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEE
Confidence            3456666633333333445666788886      88889999999999999999999999999999999999 5668999


Q ss_pred             EeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEe
Q 009993          179 SSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS  254 (520)
Q Consensus       179 ~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s  254 (520)
                      ++.+|...|.+++  ++++.+++|+.|++|++||++++             .....+.+|.+.|++++|  ++++|++++
T Consensus       241 ~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~-------------~~~~~l~~hs~~is~~~f~~d~~~l~s~s  307 (456)
T KOG0266|consen  241 TLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG-------------ECVRKLKGHSDGISGLAFSPDGNLLVSAS  307 (456)
T ss_pred             EecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC-------------eEEEeeeccCCceEEEEECCCCCEEEEcC
Confidence            9999999998876  88999999999999999999875             367789999999999999  889999999


Q ss_pred             cCCeEEEEECCCCc--EEEEee-ecc--CEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeeccccc---ceEEEE
Q 009993          255 WDMTVRVWDRALLK--CLKVLR-HSD--WVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVG---NTKSLA  323 (520)
Q Consensus       255 ~dg~v~iwd~~~~~--~~~~~~-~~~--~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~---~i~~l~  323 (520)
                      .|+.|++||+.++.  +...+. +..  +++++.  +++.+++++. |+.+++||+..+..+..+. +|..   .+.+..
T Consensus       308 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~-~~~~~~~~~~~~~  386 (456)
T KOG0266|consen  308 YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT-GHSNLVRCIFSPT  386 (456)
T ss_pred             CCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec-ccCCcceeEeccc
Confidence            99999999999999  456655 322  466666  8999999999 8899999999999998887 4655   344555


Q ss_pred             ecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCC-cCCEEEEEecC--CEEEEEe--CCCcEEEEeCC
Q 009993          324 RSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH-TGPVNSLAFEF--PWLVSAA--GDGKLSLIDVR  392 (520)
Q Consensus       324 ~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~--~~l~s~s--~dg~i~vwd~~  392 (520)
                      .++.+.++++|+.|+.|++||+.++      ..+..+.+| ...+..+.+++  +++++++  .|+.+++|...
T Consensus       387 ~~~~~~~i~sg~~d~~v~~~~~~s~------~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  387 LSTGGKLIYSGSEDGSVYVWDSSSG------GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             ccCCCCeEEEEeCCceEEEEeCCcc------chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            6789999999999999999999988      678889999 88999999976  6888888  68999999764

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1.4e-30  Score=217.52  Aligned_cols=269  Identities=18%  Similarity=0.255  Sum_probs=214.8

Q ss_pred             EEEEEcc--CCCEEEEE------eCCCeEEEEECCCCcEEEEeC--CCCceEEEE--e-cCCCEEEEEeCCCcEEEEEcc
Q 009993          146 LTVFVLA--SAKLLFTS------GYDSIVRMWHLEDGFSIASSK--PLGCTIRAV--A-ADKKLLVAGGTDGFIHCWRAV  212 (520)
Q Consensus       146 ~~l~~~~--~~~~l~sg------s~dg~v~vwd~~~~~~~~~~~--~~~~~v~~~--~-~~~~~l~sg~~dg~i~vwd~~  212 (520)
                      +++.|+|  ++++.+++      ...|.+.|-++..+.-+..+.  .-......+  + ...+.+++++.||++++||..
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            6788998  34433322      236889999986554444332  223334444  3 456789999999999999953


Q ss_pred             cCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe---eC
Q 009993          213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA---PH  285 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~---~~  285 (520)
                      ..            ..++..++.|...|.++.|   ....++++|.|++|++|+...++.+.++. |...|....   ..
T Consensus        92 ~~------------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~  159 (311)
T KOG0277|consen   92 MP------------SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHI  159 (311)
T ss_pred             CC------------CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCC
Confidence            22            4577888999999999999   45678888999999999999999999987 888888877   45


Q ss_pred             CCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecC-CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCC
Q 009993          286 DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH  363 (520)
Q Consensus       286 ~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h  363 (520)
                      ++++++++ |+.+++||++.......++ .|...+.++.|+. +...|+||+.|+.|++||+++-.     .++..+.+|
T Consensus       160 ~nlfas~Sgd~~l~lwdvr~~gk~~~i~-ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-----~pl~eL~gh  233 (311)
T KOG0277|consen  160 PNLFASASGDGTLRLWDVRSPGKFMSIE-AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR-----TPLFELNGH  233 (311)
T ss_pred             CCeEEEccCCceEEEEEecCCCceeEEE-eccceeEeecccccCCcEEEecCCCceEEEEehhhcc-----ccceeecCC
Confidence            78888888 9999999998754444465 6999999999987 66789999999999999999885     578889999


Q ss_pred             cCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEec---CCEEE
Q 009993          364 TGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG---ADRIV  437 (520)
Q Consensus       364 ~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~  437 (520)
                      .-.|+.+.|+|   ..|++++.|-+++|||....                  ...+.....|+.-+..++++   +.++|
T Consensus       234 ~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~------------------ds~~e~~~~HtEFv~g~Dws~~~~~~vA  295 (311)
T KOG0277|consen  234 GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ------------------DSAIETVDHHTEFVCGLDWSLFDPGQVA  295 (311)
T ss_pred             ceEEEEEecCcchhhHhhhccccceEEecccccc------------------hhhhhhhhccceEEeccccccccCceee
Confidence            99999999998   69999999999999999864                  44555566788888888875   45999


Q ss_pred             EecCCCeEEEEeC
Q 009993          438 CGGEEGIVRIWNF  450 (520)
Q Consensus       438 sg~~Dg~v~iwd~  450 (520)
                      +.+.|+.++||+-
T Consensus       296 s~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  296 STGWDELLYVWNP  308 (311)
T ss_pred             ecccccceeeecc
Confidence            9999999999984

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=2e-31  Score=233.29  Aligned_cols=280  Identities=15%  Similarity=0.238  Sum_probs=225.9

Q ss_pred             HhhhhhccccccEEEEEEccCC-CEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEc
Q 009993          133 ELIDVLYGHTEAVLTVFVLASA-KLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRA  211 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~-~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~  211 (520)
                      .++..|.||.++|.|++=+|.. ..+++|+.||.|++||+....++.++..|.+.|..+..+...+++++.|.+|+.|.+
T Consensus        57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~  136 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKI  136 (433)
T ss_pred             cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeec
Confidence            4477789999999999999976 789999999999999999999999999999999999977799999999999999987


Q ss_pred             ccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eC-
Q 009993          212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PH-  285 (520)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~-  285 (520)
                      ...              ...++. ..+.+..+.-  .++.++|++.  .|-|||.....++..+. ..+.|.++.  |. 
T Consensus       137 ~~~--------------p~~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE  199 (433)
T KOG0268|consen  137 DGP--------------PLHTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVE  199 (433)
T ss_pred             cCC--------------cceeee-ccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCc
Confidence            542              222222 2344555554  4566888876  49999999888888888 667788887  33 


Q ss_pred             CCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCc
Q 009993          286 DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT  364 (520)
Q Consensus       286 ~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  364 (520)
                      ...|+++. |+.|.+||++++.++..+.  -....+.++|+|.+-.+++|++|..++.||++.-.     .++....+|.
T Consensus       200 TsILas~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~-----~p~~v~~dhv  272 (433)
T KOG0268|consen  200 TSILASCASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS-----RPLNVHKDHV  272 (433)
T ss_pred             chheeeeccCCceEEEecccCCccceee--eeccccceecCccccceeeccccccceehhhhhhc-----ccchhhcccc
Confidence            34566664 9999999999999988875  45667899999988889999999999999999886     6788899999


Q ss_pred             CCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccC-cceeeEEEEec--CCEEEEe
Q 009993          365 GPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG-FECNLLSVDIG--ADRIVCG  439 (520)
Q Consensus       365 ~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~sg  439 (520)
                      +.|.+++|+|  +-+++||.|.+|+||..+.+...                   .+.+. .-..|+++.++  ..++++|
T Consensus       273 sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SR-------------------diYhtkRMq~V~~Vk~S~Dskyi~SG  333 (433)
T KOG0268|consen  273 SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSR-------------------DIYHTKRMQHVFCVKYSMDSKYIISG  333 (433)
T ss_pred             eeEEEeccCCCcchhccccccceEEEeecCCCcch-------------------hhhhHhhhheeeEEEEeccccEEEec
Confidence            9999999987  79999999999999999864211                   11111 11345666654  5599999


Q ss_pred             cCCCeEEEEeCCchHh
Q 009993          440 GEEGIVRIWNFSQAFE  455 (520)
Q Consensus       440 ~~Dg~v~iwd~~~~~~  455 (520)
                      |+|+.||+|.....+.
T Consensus       334 Sdd~nvRlWka~Asek  349 (433)
T KOG0268|consen  334 SDDGNVRLWKAKASEK  349 (433)
T ss_pred             CCCcceeeeecchhhh
Confidence            9999999999765444

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.1e-30  Score=249.95  Aligned_cols=290  Identities=17%  Similarity=0.207  Sum_probs=204.5

Q ss_pred             hhhhc-cccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEE-EEecCC--------------C--E
Q 009993          135 IDVLY-GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR-AVAADK--------------K--L  196 (520)
Q Consensus       135 ~~~l~-~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~-~~~~~~--------------~--~  196 (520)
                      .+.+. +|.+.|+++.|++||+|||+||.|+.|+||.+...+....-.+....+. .+..++              .  .
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            44566 9999999999999999999999999999999865332111111000000 000000              0  1


Q ss_pred             EEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEeee
Q 009993          197 LVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLRH  275 (520)
Q Consensus       197 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~  275 (520)
                      .-.+.....+ +.+..         ...-...+...+.||.+.|.+|.| ..++|+++|.|+||++|++...+|++.|.|
T Consensus       339 ~~~~~~s~~~-~~p~~---------~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~H  408 (712)
T KOG0283|consen  339 SRKGSQSPCV-LLPLK---------AFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSH  408 (712)
T ss_pred             cccccCCccc-cCCCc---------cccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEec
Confidence            1111111111 11100         011124567788899999999999 778999999999999999999999999999


Q ss_pred             ccCEEEEe---eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccc
Q 009993          276 SDWVYGLA---PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE  351 (520)
Q Consensus       276 ~~~v~~~~---~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~  351 (520)
                      .+.|+|++   -|++++++|+ |+.|+||++...+.+.-..  -..-|++++|.|+|+..++|+.+|.+++|+.......
T Consensus       409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D--l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~  486 (712)
T KOG0283|consen  409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND--LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLV  486 (712)
T ss_pred             CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh--hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEE
Confidence            99999999   5789999999 9999999998887766553  4478999999999999999999999999999887332


Q ss_pred             cceeeee---eecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCccee
Q 009993          352 ANVLLVA---TWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN  425 (520)
Q Consensus       352 ~~~~~~~---~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (520)
                      .......   .-..|. .|+++.|.|   +.+++.+.|..|+|+|.++.....+..               ..-.+....
T Consensus       487 ~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK---------------G~~n~~SQ~  550 (712)
T KOG0283|consen  487 SDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK---------------GFRNTSSQI  550 (712)
T ss_pred             EeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhc---------------ccccCCcce
Confidence            1111000   001133 799999954   678888999999999996532111100               001112223


Q ss_pred             eEEEEecCCEEEEecCCCeEEEEeCCc
Q 009993          426 LLSVDIGADRIVCGGEEGIVRIWNFSQ  452 (520)
Q Consensus       426 v~~~~~~~~~l~sg~~Dg~v~iwd~~~  452 (520)
                      -.++..+|++|++|++|..|+||+...
T Consensus       551 ~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  551 SASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             eeeEccCCCEEEEeecCceEEEEeCCC
Confidence            345666888999999999999999843

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.6e-31  Score=234.63  Aligned_cols=252  Identities=18%  Similarity=0.282  Sum_probs=207.7

Q ss_pred             CCCCCCCcccHH-------HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC-CCCceE--EEE
Q 009993          121 LGAGFSDDKSWK-------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTI--RAV  190 (520)
Q Consensus       121 ~~~~~~~~~~W~-------~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~-~~~~~v--~~~  190 (520)
                      .++.+...-+|+       ++.+++.||..+|..+.|+||.++|++++.|..+.+||+.+|.....+. +++..+  .++
T Consensus       241 saSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W  320 (519)
T KOG0293|consen  241 SASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAW  320 (519)
T ss_pred             eccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEE
Confidence            344455567787       6688999999999999999999999999999999999999998887764 333444  455


Q ss_pred             ecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEecc-CCCCeEEEEE--cCCEEEEEecCCeEEEEECCCC
Q 009993          191 AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE-HEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL  267 (520)
Q Consensus       191 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~  267 (520)
                      .|||..+++|+.|+++..||+......              ...+ ....|.+++.  ||+++++.+.|..|++++.++.
T Consensus       321 ~pDg~~~V~Gs~dr~i~~wdlDgn~~~--------------~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~  386 (519)
T KOG0293|consen  321 CPDGFRFVTGSPDRTIIMWDLDGNILG--------------NWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR  386 (519)
T ss_pred             ccCCceeEecCCCCcEEEecCCcchhh--------------cccccccceeEEEEEcCCCcEEEEEecccceeeechhhh
Confidence            599999999999999999998765311              1111 1245788887  9999999999999999999988


Q ss_pred             cEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccc--eEEEEecC-CCCEEEEEeCCCeEE
Q 009993          268 KCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGN--TKSLARSH-TGDFLFTGGEDGAIH  341 (520)
Q Consensus       268 ~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~--i~~l~~s~-~~~~l~tg~~dg~i~  341 (520)
                      .....+....+|++++  .+++++.+.- +..+++||++....+..+. ||...  +-.-||.- +..++++|++|+.|+
T Consensus       387 ~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~-Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvy  465 (519)
T KOG0293|consen  387 VDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF-GHKQGHFIIRSCFGGGNDKFIASGSEDSKVY  465 (519)
T ss_pred             hhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh-cccccceEEEeccCCCCcceEEecCCCceEE
Confidence            8877777778888776  7778777777 8999999999888888876 56443  33445543 558999999999999


Q ss_pred             EEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCc
Q 009993          342 MYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       342 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~  393 (520)
                      ||+..++      +++.++.||...|+|++|+|   .++|+||+||+|+||....
T Consensus       466 IWhr~sg------kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  466 IWHRISG------KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             EEEccCC------ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            9999999      89999999999999999987   6999999999999998865

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=2.3e-29  Score=212.23  Aligned_cols=254  Identities=23%  Similarity=0.345  Sum_probs=208.9

Q ss_pred             CCCCCCcccHHHh-------hhhh-ccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC--cEEEEeCCCCceEEEEe
Q 009993          122 GAGFSDDKSWKEL-------IDVL-YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG--FSIASSKPLGCTIRAVA  191 (520)
Q Consensus       122 ~~~~~~~~~W~~~-------~~~l-~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~--~~~~~~~~~~~~v~~~~  191 (520)
                      .+++...++|..-       ..+| .+|+..|..++|+|.|++|++||.|.++.||.-..+  +++.++.+|...|.+++
T Consensus        33 cg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Va  112 (312)
T KOG0645|consen   33 CGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVA  112 (312)
T ss_pred             ecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEE
Confidence            3445556888733       3333 589999999999999999999999999999987644  67889999999888776


Q ss_pred             --cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECC--
Q 009993          192 --ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRA--  265 (520)
Q Consensus       192 --~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~--  265 (520)
                        .+|++||+++.|+.|-+|.+..+          ....+...+.+|...|..+.|+|  ..|+++|.|.+|++|+-.  
T Consensus       113 ws~sG~~LATCSRDKSVWiWe~ded----------dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d  182 (312)
T KOG0645|consen  113 WSASGNYLATCSRDKSVWIWEIDED----------DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD  182 (312)
T ss_pred             EcCCCCEEEEeeCCCeEEEEEecCC----------CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCC
Confidence              89999999999999999998754          33557788999999999999977  889999999999999876  


Q ss_pred             -CCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeE
Q 009993          266 -LLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI  340 (520)
Q Consensus       266 -~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i  340 (520)
                       ..++.+++. |...|.++.  +.|..+++++ |++++||-..+     .+...|..+++.+.|.  ...|++++.|+.|
T Consensus       183 ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i  255 (312)
T KOG0645|consen  183 DDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAI  255 (312)
T ss_pred             CCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----CcchhcccceEeeeec--ccceEeccCCCEE
Confidence             446788887 778898887  7788999999 89999998652     3344588899999997  5689999999999


Q ss_pred             EEEEcccCccccceeeee-eecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCC
Q 009993          341 HMYEIINDCTEANVLLVA-TWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       341 ~iwd~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~  392 (520)
                      ++|.............+. .-..|...|+++.|+|   ++|++|+.||.|++|.+.
T Consensus       256 ~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  256 RLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             EEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            999877543222222222 3457889999999987   699999999999999874

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=2.9e-31  Score=221.02  Aligned_cols=240  Identities=22%  Similarity=0.299  Sum_probs=214.1

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC-CCCceEEEEecCCCEEEEEeCCCcEEEEEccc
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRAVAADKKLLVAGGTDGFIHCWRAVE  213 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~  213 (520)
                      +.+|.||+++|+...++.+....++++.|-+-+|||.-+|..+.++. .|-....+++.|.++|++|+.+..++|+|++.
T Consensus        52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~  131 (334)
T KOG0278|consen   52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNR  131 (334)
T ss_pred             EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccC
Confidence            77899999999999999998899999999999999999999988885 35555566779999999999999999999876


Q ss_pred             CcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEE
Q 009993          214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTV  289 (520)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l  289 (520)
                      .            ..+...+.+|.+.|..+.|  ..+.+++.+.|++||+||.+++..++++..+.+|+++.  ++|+++
T Consensus       132 p------------~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~il  199 (334)
T KOG0278|consen  132 P------------KAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRIL  199 (334)
T ss_pred             C------------CCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEE
Confidence            5            3455677899999999999  66789999999999999999999999999999999877  889999


Q ss_pred             EEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeee-cCCcCCEE
Q 009993          290 ASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW-IPHTGPVN  368 (520)
Q Consensus       290 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~  368 (520)
                      .++..+.|.+||..+...++.+.  -...|.+..++|+...+++|++|..++.||..++      ..+..+ .+|.++|.
T Consensus       200 Tia~gssV~Fwdaksf~~lKs~k--~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg------eEi~~~nkgh~gpVh  271 (334)
T KOG0278|consen  200 TIAYGSSVKFWDAKSFGLLKSYK--MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG------EEIGSYNKGHFGPVH  271 (334)
T ss_pred             EEecCceeEEeccccccceeecc--CccccccccccCCCceEEecCcceEEEEEeccCC------ceeeecccCCCCceE
Confidence            99889999999999999988875  5678999999999999999999999999999999      445554 89999999


Q ss_pred             EEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993          369 SLAFEF--PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       369 ~l~~~~--~~l~s~s~dg~i~vwd~~~~  394 (520)
                      |+.|+|  ...++||.||+|++|.....
T Consensus       272 cVrFSPdGE~yAsGSEDGTirlWQt~~~  299 (334)
T KOG0278|consen  272 CVRFSPDGELYASGSEDGTIRLWQTTPG  299 (334)
T ss_pred             EEEECCCCceeeccCCCceEEEEEecCC
Confidence            999987  58899999999999998764

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=9.5e-29  Score=208.06  Aligned_cols=289  Identities=19%  Similarity=0.285  Sum_probs=221.4

Q ss_pred             hhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccC
Q 009993          137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEV  214 (520)
Q Consensus       137 ~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~  214 (520)
                      .|+||..+++.+.++.+|.+|++++.|.+..||-..+|+.+.++.+|...|.++.  .+.+.+++|+.|.++++||+++|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            4789999999999999999999999999999999999999999999999999987  67889999999999999999998


Q ss_pred             cceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec-----CCeEEEEECC-------CCcEEEEee-eccCE
Q 009993          215 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-----DMTVRVWDRA-------LLKCLKVLR-HSDWV  279 (520)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-----dg~v~iwd~~-------~~~~~~~~~-~~~~v  279 (520)
                      .              .........+|..+.|  ++++++....     .+.|.++|++       ..++...+. +...+
T Consensus        85 k--------------~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ski  150 (327)
T KOG0643|consen   85 K--------------QLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKI  150 (327)
T ss_pred             c--------------EEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccce
Confidence            4              2223345678888888  6677665543     3689999998       344455554 55566


Q ss_pred             EEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceee
Q 009993          280 YGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL  356 (520)
Q Consensus       280 ~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~  356 (520)
                      +..-  +-+..+++|. +|.|.+||+++|.....-...|...|+.+.++|+..++++++.|.+-++||+.+-      ..
T Consensus       151 t~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl------~v  224 (327)
T KOG0643|consen  151 TSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL------EV  224 (327)
T ss_pred             eeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce------ee
Confidence            6544  8899999999 9999999999997666555579999999999999999999999999999999988      56


Q ss_pred             eeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeee--ecCCCcccccCcceeeEEEEec
Q 009993          357 VATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVI--EVEPPQRMLHGFECNLLSVDIG  432 (520)
Q Consensus       357 ~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~  432 (520)
                      ++++. ...||++.+++|  ++++.|+.....-|=-..+.       .++...++.  ..++......+|-.++.+++++
T Consensus       225 ~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r-------~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh  296 (327)
T KOG0643|consen  225 LKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTR-------AGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH  296 (327)
T ss_pred             EEEee-ecccccceecccccceEEecCCceeeeeeeeccc-------ccchhhhHHHHHHHHHhccccccccCcceeEEC
Confidence            66654 356999999988  56666654332222211110       111111111  1122233457788777766655


Q ss_pred             --CCEEEEecCCCeEEEEeCCch
Q 009993          433 --ADRIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       433 --~~~l~sg~~Dg~v~iwd~~~~  453 (520)
                        |...++||+||.||+.-++..
T Consensus       297 PdGksYsSGGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  297 PDGKSYSSGGEDGYVRLHHFDSN  319 (327)
T ss_pred             CCCcccccCCCCceEEEEEeccc
Confidence              559999999999999877653

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=3.7e-30  Score=229.04  Aligned_cols=277  Identities=20%  Similarity=0.291  Sum_probs=230.3

Q ss_pred             HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc--EEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEE
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHC  208 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~v  208 (520)
                      .....+..|.+.|..+.|-++...|++|+.|..|++|++..++  .+.++.+..+.+.++.  +++..+++++.|+.+++
T Consensus       166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~  245 (459)
T KOG0288|consen  166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL  245 (459)
T ss_pred             hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence            5577889999999999999998899999999999999997665  6677778878888776  78899999999999999


Q ss_pred             EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEeeCC
Q 009993          209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHD  286 (520)
Q Consensus       209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~  286 (520)
                      |++...             ....++.+|++.|+++.|  ....+++|+.|.+|+.||+....|.+++-....+..+...+
T Consensus       246 Wnvd~~-------------r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~  312 (459)
T KOG0288|consen  246 WNVDSL-------------RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSI  312 (459)
T ss_pred             eeccch-------------hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecc
Confidence            998765             356678899999999999  34449999999999999999999999888777788888778


Q ss_pred             CEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecC---
Q 009993          287 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP---  362 (520)
Q Consensus       287 ~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~---  362 (520)
                      ..+++|. |++|++||.++..+....+  -.+.|+++..++++..|.+++.|.++.++|+++..      ...++..   
T Consensus       313 ~~~~SgH~DkkvRfwD~Rs~~~~~sv~--~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e------I~~~~sA~g~  384 (459)
T KOG0288|consen  313 SDVISGHFDKKVRFWDIRSADKTRSVP--LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE------IRQTFSAEGF  384 (459)
T ss_pred             eeeeecccccceEEEeccCCceeeEee--cCcceeeEeeccCCeEEeeecCCCceeeeeccccc------EEEEeecccc
Confidence            8888888 9999999999999998886  44599999999999999999999999999999983      3333332   


Q ss_pred             -CcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcce--eeEEEEec--CCE
Q 009993          363 -HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC--NLLSVDIG--ADR  435 (520)
Q Consensus       363 -h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~--~~~  435 (520)
                       .....+.+.|+|  .|+++||.||.|+||++.++...                   ..+...+.  .++++.|+  |..
T Consensus       385 k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE-------------------~~l~~s~s~~aI~s~~W~~sG~~  445 (459)
T KOG0288|consen  385 KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE-------------------KVLSLSTSNAAITSLSWNPSGSG  445 (459)
T ss_pred             ccccccceeEECCCCceeeeccCCCcEEEEEccCceEE-------------------EEeccCCCCcceEEEEEcCCCch
Confidence             122478888987  69999999999999999985322                   22222221  36666655  559


Q ss_pred             EEEecCCCeEEEEe
Q 009993          436 IVCGGEEGIVRIWN  449 (520)
Q Consensus       436 l~sg~~Dg~v~iwd  449 (520)
                      +++++.++.+.+|.
T Consensus       446 Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  446 LLSADKQKAVTLWT  459 (459)
T ss_pred             hhcccCCcceEecC
Confidence            99999999999993

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=7e-29  Score=213.66  Aligned_cols=298  Identities=19%  Similarity=0.323  Sum_probs=240.0

Q ss_pred             HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR  210 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd  210 (520)
                      .+++.|.||++.|+.++.......+.+++.|.+.+||.+++|.++.++.+|.+.|.++.  +.+.++++++.|++-.||.
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~  218 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK  218 (481)
T ss_pred             eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence            56888999999999999988788999999999999999999999999999999988876  8888999999999999996


Q ss_pred             cc----cCc----------c-------eeee------ccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEE
Q 009993          211 AV----EVL----------P-------HLFD------ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRV  261 (520)
Q Consensus       211 ~~----~~~----------~-------~~~~------~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~i  261 (520)
                      ..    ...          .       ..-+      ..+.....+...+.+|.+.|.+..|  .+..+++++.|.+..+
T Consensus       219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl  298 (481)
T KOG0300|consen  219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL  298 (481)
T ss_pred             HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence            21    100          0       0000      1111234456788899999999999  7789999999999999


Q ss_pred             EECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCee-eEEeecccccceEEEEecCCCCEEEEEeC
Q 009993          262 WDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCL-LTVVNGAHVGNTKSLARSHTGDFLFTGGE  336 (520)
Q Consensus       262 wd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~-~~~~~~~~~~~i~~l~~s~~~~~l~tg~~  336 (520)
                      ||+++++.+..+. |....+.++  |..+++++++ |.+.++||.+..-. +..| .+|...|+++.|..+ ..+++|++
T Consensus       299 wDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VF-QGHtdtVTS~vF~~d-d~vVSgSD  376 (481)
T KOG0300|consen  299 WDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVF-QGHTDTVTSVVFNTD-DRVVSGSD  376 (481)
T ss_pred             eeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeee-cccccceeEEEEecC-CceeecCC
Confidence            9999999999987 888887776  8888899999 99999999986543 4445 489999999999865 56899999


Q ss_pred             CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCC
Q 009993          337 DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEP  414 (520)
Q Consensus       337 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  414 (520)
                      |.+|++||+++..     .++.++. -..+++.++.+-  ..|+.--.+..|++||++......-               
T Consensus       377 DrTvKvWdLrNMR-----splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRl---------------  435 (481)
T KOG0300|consen  377 DRTVKVWDLRNMR-----SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARL---------------  435 (481)
T ss_pred             CceEEEeeecccc-----Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccC---------------
Confidence            9999999999885     4455554 345788888853  5677777788999999986433221               


Q ss_pred             CcccccCcceeeEEEEecCC----EEEEecCCCeEEEEeCCch
Q 009993          415 PQRMLHGFECNLLSVDIGAD----RIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       415 ~~~~~~~~~~~v~~~~~~~~----~l~sg~~Dg~v~iwd~~~~  453 (520)
                      +...-.+|...|.|.+|..+    -|+++|.|..+.=|++...
T Consensus       436 PrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  436 PRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             CcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            22234688889999998766    6899999999999998754

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=8.2e-28  Score=255.22  Aligned_cols=304  Identities=17%  Similarity=0.247  Sum_probs=222.4

Q ss_pred             CCeEEEEECCCCcEEEEe-----CCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEecc
Q 009993          163 DSIVRMWHLEDGFSIASS-----KPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE  235 (520)
Q Consensus       163 dg~v~vwd~~~~~~~~~~-----~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  235 (520)
                      +|.+++|+..+......+     ..|...|.++.  ++++++++|+.|+.|++|+..+....     ..........+ .
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~-----~~~~~~~~~~~-~  530 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD-----GRDIHYPVVEL-A  530 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc-----ccccccceEEe-c
Confidence            677888888765544333     34777777665  89999999999999999997542100     00001112223 3


Q ss_pred             CCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--e-CCCEEEEEc-CCeEEEEECCCCee
Q 009993          236 HEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--P-HDTTVASTS-GSDVYIWDTNSGCL  307 (520)
Q Consensus       236 h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~-~~~~l~~~~-d~~i~iwd~~~~~~  307 (520)
                      +...|.+++|   ++.+|++++.||+|++||+.+++.+..+. |...|+++.  + ++.+|++|+ |+.|++||++++..
T Consensus       531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~  610 (793)
T PLN00181        531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS  610 (793)
T ss_pred             ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE
Confidence            4567899999   35789999999999999999998888886 899999988  3 578899999 99999999999988


Q ss_pred             eEEeecccccceEEEEec-CCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEec-CCEEEEEeCCCc
Q 009993          308 LTVVNGAHVGNTKSLARS-HTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE-FPWLVSAAGDGK  385 (520)
Q Consensus       308 ~~~~~~~~~~~i~~l~~s-~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~  385 (520)
                      +..+.  +...+.++.|+ +++.+|++|+.||.|++||+++..     .++..+.+|...|+++.|. +.+|++++.|++
T Consensus       611 ~~~~~--~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~-----~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~  683 (793)
T PLN00181        611 IGTIK--TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK-----LPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNT  683 (793)
T ss_pred             EEEEe--cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC-----ccceEecCCCCCEEEEEEeCCCEEEEEECCCE
Confidence            88876  34679999995 578999999999999999998762     2466778999999999994 589999999999


Q ss_pred             EEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeE--EEEecCCEEEEecCCCeEEEEeCCchHhHHHHh---
Q 009993          386 LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLL--SVDIGADRIVCGGEEGIVRIWNFSQAFEIERRA---  460 (520)
Q Consensus       386 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---  460 (520)
                      |++||++.......             ..+...+.+|...+.  ++++++.+|++|+.||.|++|+......+....   
T Consensus       684 ikiWd~~~~~~~~~-------------~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~  750 (793)
T PLN00181        684 LKLWDLSMSISGIN-------------ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKT  750 (793)
T ss_pred             EEEEeCCCCccccC-------------CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEeccc
Confidence            99999975321000             123344566766544  455566799999999999999986553221100   


Q ss_pred             -hhhcccccchhhhhccceeeeccCCCccccccc
Q 009993          461 -RALRGIRLENRMRRRKLQTEMSSKGGRTDQCSV  493 (520)
Q Consensus       461 -~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~  493 (520)
                       ....+.. .......+..++|+|+|..+++++.
T Consensus       751 ~~~~~~~~-~~~~~~~V~~v~ws~~~~~lva~~~  783 (793)
T PLN00181        751 IDPVSGLE-VDDASQFISSVCWRGQSSTLVAANS  783 (793)
T ss_pred             CCcccccc-cCCCCcEEEEEEEcCCCCeEEEecC
Confidence             0000100 1122345789999999999888773

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.9e-28  Score=233.79  Aligned_cols=280  Identities=20%  Similarity=0.251  Sum_probs=229.0

Q ss_pred             CCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEE
Q 009993          124 GFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLL  197 (520)
Q Consensus       124 ~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l  197 (520)
                      .+..++.|+    .++..|.+|.++|..++|+|++.++++|+.|-.|+||+..+.+++.++.+|-..|..+.  +.-..|
T Consensus        29 HsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWI  108 (1202)
T KOG0292|consen   29 HSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWI  108 (1202)
T ss_pred             cCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceE
Confidence            355678999    78999999999999999999999999999999999999999999999999999888765  677799


Q ss_pred             EEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCCc-------
Q 009993          198 VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLK-------  268 (520)
Q Consensus       198 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~~-------  268 (520)
                      +++|.|.+|+||++.+.             .++..+.||...|.|..|.+  +.++|+|-|.+|++||+...+       
T Consensus       109 lSASDDQTIrIWNwqsr-------------~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg  175 (1202)
T KOG0292|consen  109 LSASDDQTIRIWNWQSR-------------KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPG  175 (1202)
T ss_pred             EEccCCCeEEEEeccCC-------------ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCC
Confidence            99999999999999775             47888999999999999955  789999999999999974211       


Q ss_pred             --------------------E-E-EEee-eccCEEEEeeCC--CEEEEEc-CCeEEEEECCCCee--eEEeecccccceE
Q 009993          269 --------------------C-L-KVLR-HSDWVYGLAPHD--TTVASTS-GSDVYIWDTNSGCL--LTVVNGAHVGNTK  320 (520)
Q Consensus       269 --------------------~-~-~~~~-~~~~v~~~~~~~--~~l~~~~-d~~i~iwd~~~~~~--~~~~~~~~~~~i~  320 (520)
                                          . + +.+. |...|+-.+.++  .++++|+ |..|++|.+..-+.  +.+. .+|.+.|.
T Consensus       176 ~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtc-rgH~nnVs  254 (1202)
T KOG0292|consen  176 SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTC-RGHYNNVS  254 (1202)
T ss_pred             CchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhh-hcccCCcc
Confidence                                0 1 1122 666777666444  7899999 79999999875443  2223 37999999


Q ss_pred             EEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCC-EEEEEeCCCcEEEEeCCcccccCC
Q 009993          321 SLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP-WLVSAAGDGKLSLIDVRKLLRSGR  399 (520)
Q Consensus       321 ~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~  399 (520)
                      ++-|+|..+++++.++|++|+|||+...      ..+.++....+..+.++.+|. -|++++.|+-+.||.+...     
T Consensus       255 svlfhp~q~lIlSnsEDksirVwDm~kR------t~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRE-----  323 (1202)
T KOG0292|consen  255 SVLFHPHQDLILSNSEDKSIRVWDMTKR------TSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERE-----  323 (1202)
T ss_pred             eEEecCccceeEecCCCccEEEEecccc------cceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEccc-----
Confidence            9999999999999999999999999988      788999888889999999984 5667777888889988752     


Q ss_pred             CCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHh
Q 009993          400 PTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE  455 (520)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~  455 (520)
                                              .++.+++  ++.|.-.- |..|+-+|+.+.+.
T Consensus       324 ------------------------rpa~~v~--~n~LfYvk-d~~i~~~d~~t~~d  352 (1202)
T KOG0292|consen  324 ------------------------RPAYAVN--GNGLFYVK-DRFIRSYDLRTQKD  352 (1202)
T ss_pred             ------------------------CceEEEc--CCEEEEEc-cceEEeeecccccc
Confidence                                    1233333  45333333 88999999987443

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=1.5e-29  Score=210.75  Aligned_cols=279  Identities=18%  Similarity=0.241  Sum_probs=226.3

Q ss_pred             hhhccccccEEEEEEc---cCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009993          136 DVLYGHTEAVLTVFVL---ASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR  210 (520)
Q Consensus       136 ~~l~~h~~~V~~l~~~---~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd  210 (520)
                      .+..||+.+|-.++|+   |+|-+|++++.|+.=.+-+-++|.-+.+|.+|...|....  .+....++++.|-+-++||
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~   87 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD   87 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence            3457999999999998   4899999999999999989999999999999999998776  4455778899999999999


Q ss_pred             cccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcE-EEEee-eccCEEEEe--e
Q 009993          211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKC-LKVLR-HSDWVYGLA--P  284 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~-~~~~v~~~~--~  284 (520)
                      ..+|.             .+. ...|..-|.+++|  |.++|++|+.++.+++||++..+. ...+. |++.|..+-  .
T Consensus        88 a~tgd-------------elh-sf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~  153 (334)
T KOG0278|consen   88 AVTGD-------------ELH-SFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH  153 (334)
T ss_pred             hhhhh-------------hhh-hhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec
Confidence            98874             222 2368899999999  778999999999999999987643 33343 888888766  4


Q ss_pred             CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCC
Q 009993          285 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH  363 (520)
Q Consensus       285 ~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h  363 (520)
                      .++.++++. |++|++||.+++..+..+.  ...+|+++.++++|++|.++ ..+.|.+||..+.      ..+..+. -
T Consensus       154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf------~~lKs~k-~  223 (334)
T KOG0278|consen  154 EDKCILSSADDKTVRLWDHRTGTEVQSLE--FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSF------GLLKSYK-M  223 (334)
T ss_pred             cCceEEeeccCCceEEEEeccCcEEEEEe--cCCCCcceeeccCCCEEEEe-cCceeEEeccccc------cceeecc-C
Confidence            555566655 8999999999999999986  67789999999999977665 5678999999887      4444432 2


Q ss_pred             cCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEEe
Q 009993          364 TGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCG  439 (520)
Q Consensus       364 ~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg  439 (520)
                      ...|.+.+.+|  ..+++|+.|+.++.||..++....                  ....+|..+|.|+.|+++  ..++|
T Consensus       224 P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~------------------~~nkgh~gpVhcVrFSPdGE~yAsG  285 (334)
T KOG0278|consen  224 PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIG------------------SYNKGHFGPVHCVRFSPDGELYASG  285 (334)
T ss_pred             ccccccccccCCCceEEecCcceEEEEEeccCCceee------------------ecccCCCCceEEEEECCCCceeecc
Confidence            34677777777  589999999999999999863221                  124788888888887665  99999


Q ss_pred             cCCCeEEEEeCCchHhH
Q 009993          440 GEEGIVRIWNFSQAFEI  456 (520)
Q Consensus       440 ~~Dg~v~iwd~~~~~~~  456 (520)
                      ++||+|++|....++..
T Consensus       286 SEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  286 SEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             CCCceEEEEEecCCCch
Confidence            99999999998766543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=5.6e-28  Score=206.98  Aligned_cols=241  Identities=18%  Similarity=0.273  Sum_probs=191.3

Q ss_pred             cccccEEEEEEcc-CCCEEEEEeCCCeEEEEECCC-CcEE-EEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccC
Q 009993          140 GHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLED-GFSI-ASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEV  214 (520)
Q Consensus       140 ~h~~~V~~l~~~~-~~~~l~sgs~dg~v~vwd~~~-~~~~-~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~  214 (520)
                      .-.+.|.+++||| ...++++||.|++||+|+++. |..+ +....|..+++++.  .+|..+++|+.|+.+++||+.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            4568899999999 566777999999999999986 3333 34456888888765  88999999999999999999887


Q ss_pred             cceeeeccCCccccceEEeccCCCCeEEEEE-c-C--CEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEeeCCCEEE
Q 009993          215 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL-D-L--TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVA  290 (520)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~-~--~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~  290 (520)
                                    ....+..|.++|.++.| . .  ..|++||.|++|++||++....+.++..+..++++.....+++
T Consensus       105 --------------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~v  170 (347)
T KOG0647|consen  105 --------------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAV  170 (347)
T ss_pred             --------------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeE
Confidence                          45567789999999999 2 2  3689999999999999999999999999999999996666666


Q ss_pred             EEc-CCeEEEEECCCCeee-EEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcc--ccceeeeeeecC---C
Q 009993          291 STS-GSDVYIWDTNSGCLL-TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT--EANVLLVATWIP---H  363 (520)
Q Consensus       291 ~~~-d~~i~iwd~~~~~~~-~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~--~~~~~~~~~~~~---h  363 (520)
                      ++. +..|.+|+++++... +.....-.-.+.|++..++.+..+.|+-+|.+.|..+..+..  ...+++.+.-..   .
T Consensus       171 Vata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~  250 (347)
T KOG0647|consen  171 VATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDD  250 (347)
T ss_pred             EEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCc
Confidence            665 999999999876443 233333455788999989888889999999999999987632  222233222111   1


Q ss_pred             cCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993          364 TGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       364 ~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  394 (520)
                      --.|++|+|+|  ..|++++.||++.+||-...
T Consensus       251 VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar  283 (347)
T KOG0647|consen  251 VYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR  283 (347)
T ss_pred             eEEecceEeecccceEEEecCCceEEEecchhh
Confidence            23588899998  69999999999999998764

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.2e-26  Score=200.70  Aligned_cols=279  Identities=16%  Similarity=0.210  Sum_probs=224.8

Q ss_pred             hhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCC--CceEEEEecCCCEEEEEeC--CCcEEEEEc
Q 009993          136 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPL--GCTIRAVAADKKLLVAGGT--DGFIHCWRA  211 (520)
Q Consensus       136 ~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~l~sg~~--dg~i~vwd~  211 (520)
                      +.+..-.+.|.++.|+++|.+|++++.|.++++||..+++.++++..+  +..+.++....+.++.++.  |.+|+..++
T Consensus         8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl   87 (311)
T KOG1446|consen    8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL   87 (311)
T ss_pred             cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence            345556789999999999999999999999999999999999988655  6677777766666666666  889999998


Q ss_pred             ccCcceeeeccCCccccceEEeccCCCCeEEEEEc--CCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEeeCCCE
Q 009993          212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTT  288 (520)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~  288 (520)
                      .+.             +.+..+.||...|++|+..  ++.+++++.|++|++||++..++...+. ...++.++.|.|-+
T Consensus        88 ~dN-------------kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLi  154 (311)
T KOG1446|consen   88 HDN-------------KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLI  154 (311)
T ss_pred             ecC-------------ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcE
Confidence            775             4778899999999999993  4889999999999999999999888887 67788889999999


Q ss_pred             EEEEcC-CeEEEEECCCC--eeeEEee--cccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCC
Q 009993          289 VASTSG-SDVYIWDTNSG--CLLTVVN--GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH  363 (520)
Q Consensus       289 l~~~~d-~~i~iwd~~~~--~~~~~~~--~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h  363 (520)
                      +|++.+ +.|++||++.-  .+-..+.  .+.....+.+.|+|+|++++.+...+.+++.|.-++      ....++..+
T Consensus       155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G------~~~~tfs~~  228 (311)
T KOG1446|consen  155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG------TVKSTFSGY  228 (311)
T ss_pred             EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC------cEeeeEeec
Confidence            999994 59999999864  2333332  234567899999999999999999999999999988      556666655


Q ss_pred             cCCE---EEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccC-cceeeEEEEecCCEEE
Q 009993          364 TGPV---NSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG-FECNLLSVDIGADRIV  437 (520)
Q Consensus       364 ~~~v---~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~  437 (520)
                      ...-   ....|.|  +++++|+.||+|.+|+++++...                   ..+.+ +...+.++.|++.+..
T Consensus       229 ~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v-------------------~~~~~~~~~~~~~~~fnP~~~m  289 (311)
T KOG1446|consen  229 PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKV-------------------AVLRGPNGGPVSCVRFNPRYAM  289 (311)
T ss_pred             cCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEe-------------------eEecCCCCCCccccccCCceee
Confidence            4322   4555655  79999999999999999885322                   22333 5677788889999666


Q ss_pred             EecCCCeEEEEeCCc
Q 009993          438 CGGEEGIVRIWNFSQ  452 (520)
Q Consensus       438 sg~~Dg~v~iwd~~~  452 (520)
                      -++.+..+-+|=...
T Consensus       290 f~sa~s~l~fw~p~~  304 (311)
T KOG1446|consen  290 FVSASSNLVFWLPDE  304 (311)
T ss_pred             eeecCceEEEEeccc
Confidence            666677899997654

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1e-28  Score=204.06  Aligned_cols=264  Identities=17%  Similarity=0.223  Sum_probs=216.1

Q ss_pred             hhhhcCCCCCCCC-CCCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC
Q 009993          108 YCERWGLPIASAP-LGAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP  182 (520)
Q Consensus       108 ~~~~~~~~~~~~~-~~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~  182 (520)
                      ...+|+. +..+- ....+...++|+    .+++++.||...|..++.+.|...+++|+.|..|.+||+++|+.++.+.+
T Consensus        21 ~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rg   99 (307)
T KOG0316|consen   21 RAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRG   99 (307)
T ss_pred             EEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeeccc
Confidence            3445553 22333 333466679999    66999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEE
Q 009993          183 LGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVR  260 (520)
Q Consensus       183 ~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~  260 (520)
                      |...|.++.  .+...+++|+.|.++++||.++..           ..++..+......|.++...+..+++|+.||+++
T Consensus       100 H~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s-----------~ePiQildea~D~V~Si~v~~heIvaGS~DGtvR  168 (307)
T KOG0316|consen  100 HLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS-----------FEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVR  168 (307)
T ss_pred             ccceeeEEEecCcceEEEeccccceeEEEEcccCC-----------CCccchhhhhcCceeEEEecccEEEeeccCCcEE
Confidence            999998877  566799999999999999987643           4567777788899999999999999999999999


Q ss_pred             EEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceE--EEEecCCCCEEEEEe
Q 009993          261 VWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTK--SLARSHTGDFLFTGG  335 (520)
Q Consensus       261 iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~--~l~~s~~~~~l~tg~  335 (520)
                      .||++.|...... ...+|++++  ++++..++++ |+++++.|-.+|+.+..+. +|...-+  ..+++.....+++|+
T Consensus       169 tydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk-Ghkn~eykldc~l~qsdthV~sgS  246 (307)
T KOG0316|consen  169 TYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK-GHKNMEYKLDCCLNQSDTHVFSGS  246 (307)
T ss_pred             EEEeecceeehhh-cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc-ccccceeeeeeeecccceeEEecc
Confidence            9999988765433 455666665  8999888888 9999999999999999887 6876544  445777778999999


Q ss_pred             CCCeEEEEEcccCccccceeeeeeecCCcCC-EEEEEecCC--EEEEEeCCCcEEEEeCC
Q 009993          336 EDGAIHMYEIINDCTEANVLLVATWIPHTGP-VNSLAFEFP--WLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~--~l~s~s~dg~i~vwd~~  392 (520)
                      +||.|++||+...      ..+..+..+... |++++++|.  .|+++.. +.+..|--+
T Consensus       247 EDG~Vy~wdLvd~------~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~~~  299 (307)
T KOG0316|consen  247 EDGKVYFWDLVDE------TQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWYQE  299 (307)
T ss_pred             CCceEEEEEeccc------eeeeeeccCCceeEEeeecccCccceeEecC-Cceeceeeh
Confidence            9999999999998      677778777777 899999983  4555543 346666543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=1.4e-27  Score=200.42  Aligned_cols=277  Identities=18%  Similarity=0.172  Sum_probs=222.5

Q ss_pred             hhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEE--eCCCCceEEEEe---cCCCEEEEEeCCCcEEEEE
Q 009993          136 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIAS--SKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWR  210 (520)
Q Consensus       136 ~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~--~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd  210 (520)
                      +.+++|.+.|.+++|+.+|..|++|+.|+++++|+++.......  ..+|...|-.+.   +....+++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            66889999999999999999999999999999999987755443  467877665544   6778999999999999999


Q ss_pred             cccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCC
Q 009993          211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDT  287 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~  287 (520)
                      ++.+.             +........+.+.-... ++++++.++.|..|.+.|.++.+.....+....+.-+.  .++.
T Consensus        94 ~r~~k-------------~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd  160 (313)
T KOG1407|consen   94 IRSGK-------------CTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSND  160 (313)
T ss_pred             eccCc-------------EEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCC
Confidence            98874             33334333444443333 88999999999999999999998888877666666665  5566


Q ss_pred             EEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCC
Q 009993          288 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP  366 (520)
Q Consensus       288 ~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  366 (520)
                      +++... .|.|.|......+++..+. +|.....|+.|+|+|+++|+|+.|..+.+||+..-      .+++.+..+.-+
T Consensus       161 ~Fflt~GlG~v~ILsypsLkpv~si~-AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL------iC~R~isRldwp  233 (313)
T KOG1407|consen  161 LFFLTNGLGCVEILSYPSLKPVQSIK-AHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL------ICERCISRLDWP  233 (313)
T ss_pred             EEEEecCCceEEEEeccccccccccc-cCCcceEEEEECCCCceEeeccccceeeccChhHh------hhheeeccccCc
Confidence            666655 6999999999999999997 79999999999999999999999999999999888      889999999999


Q ss_pred             EEEEEe--cCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEEecCC
Q 009993          367 VNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEE  442 (520)
Q Consensus       367 v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~D  442 (520)
                      |+.++|  ++++|++||.|..|-|=++.++.+...                    -.+..+...++|+++  +||-+++|
T Consensus       234 VRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~e--------------------I~~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  234 VRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWE--------------------IPCEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             eEEEEeccCcceeeccCccceEEeEecccCCeEEE--------------------eeccCCceeEEecCCCceeeEEecC
Confidence            999999  468999999999999999988633211                    113445566777776  66655543


Q ss_pred             ---------CeEEEEeCCc
Q 009993          443 ---------GIVRIWNFSQ  452 (520)
Q Consensus       443 ---------g~v~iwd~~~  452 (520)
                               |.|++|-+++
T Consensus       294 k~~d~~reag~vKiFG~~~  312 (313)
T KOG1407|consen  294 KDGDSNREAGTVKIFGLSN  312 (313)
T ss_pred             CCCccccccceeEEecCCC
Confidence                     5677776543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=4.3e-28  Score=221.58  Aligned_cols=292  Identities=15%  Similarity=0.170  Sum_probs=217.9

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC-------cEEEEeCCCCceEEEEecCCCEEEEEeCCCcEE
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-------FSIASSKPLGCTIRAVAADKKLLVAGGTDGFIH  207 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~  207 (520)
                      -..|++|+..|.++++.|.|..|+|||.|-+|++||+...       +.+.....|......+++.+..|++.+.....+
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak  239 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK  239 (641)
T ss_pred             eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence            3467899999999999999999999999999999999744       223334567778888889999999999889999


Q ss_pred             EEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC---CEEEEEecCCeEEEEECCCC-cEEEEeee------cc
Q 009993          208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL---TRIYSGSWDMTVRVWDRALL-KCLKVLRH------SD  277 (520)
Q Consensus       208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~v~iwd~~~~-~~~~~~~~------~~  277 (520)
                      ++|-... .......+.....-.....||...++|.+|++   ..+++++.||++++||+... +.+.++.+      .-
T Consensus       240 l~DRdG~-~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  240 LLDRDGF-EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV  318 (641)
T ss_pred             EEccCCc-eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence            9985432 22222223333334456679999999999944   67999999999999999754 34444442      12


Q ss_pred             CEE--EEeeCCCEEEEEc-CCeEEEEECCCC--eeeEEeeccccc--ceEEEEecCCCCEEEEEeCCCeEEEEEcccCcc
Q 009993          278 WVY--GLAPHDTTVASTS-GSDVYIWDTNSG--CLLTVVNGAHVG--NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT  350 (520)
Q Consensus       278 ~v~--~~~~~~~~l~~~~-d~~i~iwd~~~~--~~~~~~~~~~~~--~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~  350 (520)
                      +++  .+.++++++++|. ||.|.+||....  .+...+..+|..  .|+++.||++|++|++-+.|+++++||++... 
T Consensus       319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k-  397 (641)
T KOG0772|consen  319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK-  397 (641)
T ss_pred             CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc-
Confidence            233  3448999999999 999999998554  334445557877  99999999999999999999999999999885 


Q ss_pred             ccceeeeeeecC--CcCCEEEEEecC--CEEEEEeC------CCcEEEEeCCcccccCCCCCCCceeeeeecCCCccccc
Q 009993          351 EANVLLVATWIP--HTGPVNSLAFEF--PWLVSAAG------DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH  420 (520)
Q Consensus       351 ~~~~~~~~~~~~--h~~~v~~l~~~~--~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (520)
                          +++....+  ..-+-+.++|+|  .+|++|+.      .|.+.+||..+.....+                   +.
T Consensus       398 ----kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~k-------------------i~  454 (641)
T KOG0772|consen  398 ----KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYK-------------------ID  454 (641)
T ss_pred             ----cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEE-------------------ec
Confidence                34444333  233567888988  57788765      57899999887532211                   12


Q ss_pred             CcceeeEEEEecCC--EEEEecCCCeEEEEeCC
Q 009993          421 GFECNLLSVDIGAD--RIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       421 ~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~  451 (520)
                      -.+..|..+.|+++  .|..|+.||.+++|==.
T Consensus       455 i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp  487 (641)
T KOG0772|consen  455 ISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDP  487 (641)
T ss_pred             CCCceEEEEeecchhhheeeecCCCceEEEECc
Confidence            22567778888887  88889999999987433

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=2.3e-28  Score=209.83  Aligned_cols=282  Identities=15%  Similarity=0.262  Sum_probs=225.5

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC------------------cEEEEeCCCCceEEEEe--cCC
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG------------------FSIASSKPLGCTIRAVA--ADK  194 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~------------------~~~~~~~~~~~~v~~~~--~~~  194 (520)
                      ...+..|++++.+.+|+|||.+++|||.|..|+|.|++..                  -.++++..|...|.++.  |..
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            3457889999999999999999999999999999998721                  24667778888877665  899


Q ss_pred             CEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEE
Q 009993          195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKV  272 (520)
Q Consensus       195 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~  272 (520)
                      ..|++|+.|++|+++|.....           .+..+.......+|.++.|  .|.+|+.|..-.++++||+.+.++...
T Consensus       185 ~ILiS~srD~tvKlFDfsK~s-----------aKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs  253 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTS-----------AKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS  253 (430)
T ss_pred             heEEeccCCCeEEEEecccHH-----------HHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence            999999999999999985431           1223334455678999999  778999999999999999999988765


Q ss_pred             ee----eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeeccccc-ceEEEEecCCCCEEEEEeCCCeEEEEE
Q 009993          273 LR----HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVG-NTKSLARSHTGDFLFTGGEDGAIHMYE  344 (520)
Q Consensus       273 ~~----~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~-~i~~l~~s~~~~~l~tg~~dg~i~iwd  344 (520)
                      -.    |.+.|+++.  +.+++.++++ ||.|++||--+++++.++..+|.+ .|.+..|..+|+++++.+.|..+++|.
T Consensus       254 anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWE  333 (430)
T KOG0640|consen  254 ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWE  333 (430)
T ss_pred             cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeee
Confidence            53    889999998  7899999999 999999999999999999888865 688899999999999999999999999


Q ss_pred             cccCccccceeeeeeecCCc--C---CEEEEEecC--CEEEEEe-CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCc
Q 009993          345 IINDCTEANVLLVATWIPHT--G---PVNSLAFEF--PWLVSAA-GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQ  416 (520)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~h~--~---~v~~l~~~~--~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (520)
                      +.++      .++..+.|..  +   --+...|+.  ++++.-. ..+.+.-||.++..+.                  .
T Consensus       334 i~t~------R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~------------------~  389 (430)
T KOG0640|consen  334 ISTG------RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV------------------A  389 (430)
T ss_pred             ecCC------ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhh------------------h
Confidence            9999      6666665531  1   123334543  5555544 4578999999985322                  2


Q ss_pred             ccccCcceeeEEEEecCC--EEEEecCCCeEEEEeCC
Q 009993          417 RMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       417 ~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~  451 (520)
                      ....+|...+..+..++.  .++|++.|-.+|+|--+
T Consensus       390 l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  390 LLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             hcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence            223567777777766654  99999999999999643

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=2.8e-27  Score=221.71  Aligned_cols=263  Identities=29%  Similarity=0.439  Sum_probs=217.7

Q ss_pred             hhhhhcCCCCCCCCC-CCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC
Q 009993          107 FYCERWGLPIASAPL-GAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK  181 (520)
Q Consensus       107 ~~~~~~~~~~~~~~~-~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~  181 (520)
                      +.+..|. |...... .+......+|+    +....+.+|...+.++.|+|+++++++++.||.|++|++.+++.+..+.
T Consensus        12 i~~~~~~-~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~   90 (289)
T cd00200          12 VTCVAFS-PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT   90 (289)
T ss_pred             EEEEEEc-CCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe
Confidence            4555665 3433332 23345557787    3456788999999999999999999999999999999999988888888


Q ss_pred             CCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc--CCEEEEEecCC
Q 009993          182 PLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSWDM  257 (520)
Q Consensus       182 ~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg  257 (520)
                      .|...+.++.  +++.++++++.||.|.+||+.++.             ....+..|...|.++.++  +.++++++.|+
T Consensus        91 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  157 (289)
T cd00200          91 GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-------------CLTTLRGHTDWVNSVAFSPDGTFVASSSQDG  157 (289)
T ss_pred             ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-------------EEEEeccCCCcEEEEEEcCcCCEEEEEcCCC
Confidence            8887777766  667888888889999999987542             344556789999999994  46777777799


Q ss_pred             eEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEE
Q 009993          258 TVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT  333 (520)
Q Consensus       258 ~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~t  333 (520)
                      .|++||+++++.+..+. +...+.++.  ++++.+++++ ++.|++||+++++.+..+. .|...+.+++|+|++.++++
T Consensus       158 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~  236 (289)
T cd00200         158 TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR-GHENGVNSVAFSPDGYLLAS  236 (289)
T ss_pred             cEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh-hcCCceEEEEEcCCCcEEEE
Confidence            99999999888888776 666888877  6776888887 9999999999988888775 58889999999999889998


Q ss_pred             EeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEe
Q 009993          334 GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLID  390 (520)
Q Consensus       334 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd  390 (520)
                      ++.||.|++||+.++      .....+..|...|.++.|++  .+|++++.||.|++|+
T Consensus       237 ~~~~~~i~i~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         237 GSEDGTIRVWDLRTG------ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EcCCCcEEEEEcCCc------eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            888999999999887      56777778999999999987  7999999999999996

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=4.8e-27  Score=202.13  Aligned_cols=265  Identities=18%  Similarity=0.246  Sum_probs=207.2

Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcceee
Q 009993          141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLF  219 (520)
Q Consensus       141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~  219 (520)
                      -.+.|..|.|+|.+..|+.+++||++++||+........+ .|..++++++ .+...+++|+.||.|+.+|+.++     
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~-----   85 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTG-----   85 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCCceEEEeccCceEEEEEecCC-----
Confidence            3678999999999999999999999999999877444333 4778888887 66789999999999999999887     


Q ss_pred             eccCCccccceEEeccCCCCeEEEEEc--CCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEeeCCCEEEEEc-CCe
Q 009993          220 DISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTS-GSD  296 (520)
Q Consensus       220 ~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~  296 (520)
                               ....+..|..+|+|+.+.  .+.+++||.|++|++||.+.......+.....|.+++..++.|++|. +..
T Consensus        86 ---------~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~  156 (323)
T KOG1036|consen   86 ---------NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRK  156 (323)
T ss_pred             ---------cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCce
Confidence                     345667899999999994  68899999999999999998777777777889999998888877766 999


Q ss_pred             EEEEECCCCeeeEEe-ecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCc---------CC
Q 009993          297 VYIWDTNSGCLLTVV-NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT---------GP  366 (520)
Q Consensus       297 i~iwd~~~~~~~~~~-~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~---------~~  366 (520)
                      |.+||+++....... ...-.-.+.++++-|++.-+++++-||.|.+=.++..+...  .....++.|.         -+
T Consensus       157 v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~--skkyaFkCHr~~~~~~~~~yP  234 (323)
T KOG1036|consen  157 VLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ--SKKYAFKCHRLSEKDTEIIYP  234 (323)
T ss_pred             EEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh--hhceeEEeeecccCCceEEEE
Confidence            999999987654322 23456689999999988889999999999886665552111  1222333442         37


Q ss_pred             EEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeE--EEEecCCEEEEecC
Q 009993          367 VNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLL--SVDIGADRIVCGGE  441 (520)
Q Consensus       367 v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~  441 (520)
                      |++|+|+|  ..|+||+.||.|.+||+.+..+.                   ..++....+|.  +++.+|..||+|+.
T Consensus       235 VNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl-------------------~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  235 VNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL-------------------KQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             eceeEeccccceEEecCCCceEEEccCcchhhh-------------------hhccCCCCceEEEEeccCCCeEEEEec
Confidence            99999998  68999999999999999874322                   23344434444  44455668888875

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.9e-26  Score=187.74  Aligned_cols=283  Identities=17%  Similarity=0.256  Sum_probs=225.8

Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCeEEEEECC------CCc---------EEEEeCCCCceEEE--EecCCCEEEEEeC
Q 009993          140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLE------DGF---------SIASSKPLGCTIRA--VAADKKLLVAGGT  202 (520)
Q Consensus       140 ~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~------~~~---------~~~~~~~~~~~v~~--~~~~~~~l~sg~~  202 (520)
                      .-+..|.+++|+|.|.+.+.|+..++.+|-...      .+.         ..+..+.|...|.|  ++|+|.+|++|+.
T Consensus        30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn  109 (350)
T KOG0641|consen   30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN  109 (350)
T ss_pred             cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence            346789999999999999999999999987542      221         11223456666665  5599999999999


Q ss_pred             CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-c-----CCEEEEEe-cCCeEEEEECCCCcEEEEee-
Q 009993          203 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-D-----LTRIYSGS-WDMTVRVWDRALLKCLKVLR-  274 (520)
Q Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~-----~~~l~s~s-~dg~v~iwd~~~~~~~~~~~-  274 (520)
                      |.+|++........        ........+.-|.+.|..++| +     +..|++++ .|..|++-|..+++..+.+. 
T Consensus       110 dk~ik~l~fn~dt~--------~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg  181 (350)
T KOG0641|consen  110 DKTIKVLPFNADTC--------NATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG  181 (350)
T ss_pred             CceEEEEecccccc--------cccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC
Confidence            99999976544321        112244556679999999999 2     24566654 57788888999999888887 


Q ss_pred             eccCEEEEe-eCCCEEEEEc-CCeEEEEECCCCeeeEEeecc-c-----ccceEEEEecCCCCEEEEEeCCCeEEEEEcc
Q 009993          275 HSDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGA-H-----VGNTKSLARSHTGDFLFTGGEDGAIHMYEII  346 (520)
Q Consensus       275 ~~~~v~~~~-~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~-~-----~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~  346 (520)
                      |.+.|.++- .++-++++|+ |.+|++||++-..++..+... |     .+.|.+++..|.|++|++|-.|....+||++
T Consensus       182 htghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir  261 (350)
T KOG0641|consen  182 HTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR  261 (350)
T ss_pred             CcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee
Confidence            999999987 8999999999 999999999999888877531 2     3578999999999999999999999999999


Q ss_pred             cCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcce
Q 009993          347 NDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC  424 (520)
Q Consensus       347 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (520)
                      .+      ..++.+.+|...|+|+.|+|  .++++++.|..|++-|+......               +.+..+...|..
T Consensus       262 g~------r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~---------------el~~~vv~ehkd  320 (350)
T KOG0641|consen  262 GG------RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH---------------ELPIMVVAEHKD  320 (350)
T ss_pred             CC------ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhh---------------cCceEEEEeccC
Confidence            99      88999999999999999998  59999999999999999753211               233444566777


Q ss_pred             eeEEEEecCC--EEEEecCCCeEEEEeCC
Q 009993          425 NLLSVDIGAD--RIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       425 ~v~~~~~~~~--~l~sg~~Dg~v~iwd~~  451 (520)
                      .+..+.|.+.  -+++.+.|.++.+|-+.
T Consensus       321 k~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  321 KAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             ceEEEEecCccceeeeccCcceEEEeccC
Confidence            7777777776  78899999999999764

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=6.6e-29  Score=214.42  Aligned_cols=278  Identities=19%  Similarity=0.330  Sum_probs=223.7

Q ss_pred             Hhhhhh-ccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEe--------CCCCceEEEEe--cCCCEEEEEe
Q 009993          133 ELIDVL-YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS--------KPLGCTIRAVA--ADKKLLVAGG  201 (520)
Q Consensus       133 ~~~~~l-~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~--------~~~~~~v~~~~--~~~~~l~sg~  201 (520)
                      .+.+.+ .|.+..+-|..|+|||++|++||.||.|-|||..+|+..+.+        .-+..+|.|++  .|...+++|+
T Consensus       203 ~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs  282 (508)
T KOG0275|consen  203 QLARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS  282 (508)
T ss_pred             HhhhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC
Confidence            444444 467788999999999999999999999999999999765433        33566777665  7888999999


Q ss_pred             CCCcEEEEEcccCcceeeeccCCccccceEEec-cCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-ecc
Q 009993          202 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSD  277 (520)
Q Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~  277 (520)
                      .||.|++|.+.+|.             +...+. .|+..|+|+.|  |+..+++++.|.++++.-+.+|++++.++ |..
T Consensus       283 qDGkIKvWri~tG~-------------ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS  349 (508)
T KOG0275|consen  283 QDGKIKVWRIETGQ-------------CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS  349 (508)
T ss_pred             cCCcEEEEEEecch-------------HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc
Confidence            99999999999984             444444 79999999999  88899999999999999999999999998 899


Q ss_pred             CEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeec-ccccceEEEEecC-CCCEEEEEeCCCeEEEEEcccCcccc
Q 009993          278 WVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG-AHVGNTKSLARSH-TGDFLFTGGEDGAIHMYEIINDCTEA  352 (520)
Q Consensus       278 ~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~-~~~~~i~~l~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~  352 (520)
                      .|+...  ++|..+++++ ||+|++|+.++.+++.++.. +...+|+++..-| +...++++...++|+|.++...    
T Consensus       350 yvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ----  425 (508)
T KOG0275|consen  350 YVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ----  425 (508)
T ss_pred             cccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce----
Confidence            898765  8999999999 99999999999999988874 3455788888777 4568889999999999998665    


Q ss_pred             ceeeeeeecC---CcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeE
Q 009993          353 NVLLVATWIP---HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLL  427 (520)
Q Consensus       353 ~~~~~~~~~~---h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  427 (520)
                         .+.++..   ..+...+...+|  .++.+.+.|+.++.+.+.++                   ...+.+.-|...+.
T Consensus       426 ---vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG-------------------~LE~tl~VhEkdvI  483 (508)
T KOG0275|consen  426 ---VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG-------------------KLERTLPVHEKDVI  483 (508)
T ss_pred             ---EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC-------------------ceeeeeeccccccc
Confidence               4444432   233444445555  79999999999999998874                   33344455665666


Q ss_pred             EEEecC--CEEEEecCCCeEEEEe
Q 009993          428 SVDIGA--DRIVCGGEEGIVRIWN  449 (520)
Q Consensus       428 ~~~~~~--~~l~sg~~Dg~v~iwd  449 (520)
                      .+..++  +.+++-++||.+++|.
T Consensus       484 Gl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  484 GLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             ccccCcccchhhhhcccchhhhcC
Confidence            665444  5999999999999995

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=7.9e-28  Score=218.90  Aligned_cols=240  Identities=21%  Similarity=0.337  Sum_probs=205.7

Q ss_pred             HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe---cCCCEEEEEeCCCcEEEE
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCW  209 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vw  209 (520)
                      ...+++.-..+.|+++.|-.||++|++|...|.|+|||+.+...++.+.+|+.++....   .++..+++|+.|+.+++|
T Consensus        59 ~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~  138 (487)
T KOG0310|consen   59 SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYW  138 (487)
T ss_pred             hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEE
Confidence            45667778889999999999999999999999999999777667788889988876654   567788999999999999


Q ss_pred             EcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCC-cEEEEeeeccCEEEEe--
Q 009993          210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALL-KCLKVLRHSDWVYGLA--  283 (520)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~v~~~~--  283 (520)
                      |+.+..             ....+.+|++.|.|.++   ++..++|||.||+|++||+++. ..+..+.|..+|..+.  
T Consensus       139 d~s~a~-------------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~l  205 (487)
T KOG0310|consen  139 DLSTAY-------------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLAL  205 (487)
T ss_pred             EcCCcE-------------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEc
Confidence            997762             35578899999999999   4568999999999999999987 7888888999999987  


Q ss_pred             eCCCEEEEEcCCeEEEEECCCCee-eEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecC
Q 009993          284 PHDTTVASTSGSDVYIWDTNSGCL-LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP  362 (520)
Q Consensus       284 ~~~~~l~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  362 (520)
                      |.|..++++++..|++||+.+|.. +.... .|...|+|+.+..++..|++|+-|+.+++||+.+-      +.+..+ .
T Consensus       206 psgs~iasAgGn~vkVWDl~~G~qll~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~------Kvv~s~-~  277 (487)
T KOG0310|consen  206 PSGSLIASAGGNSVKVWDLTTGGQLLTSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY------KVVHSW-K  277 (487)
T ss_pred             CCCCEEEEcCCCeEEEEEecCCceehhhhh-cccceEEEEEeecCCceEeecccccceEEEEccce------EEEEee-e
Confidence            888999999999999999996644 44443 49999999999999999999999999999997776      555555 3


Q ss_pred             CcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993          363 HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       363 h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  393 (520)
                      -.++|.+++.+|  +.++.|..||.+.+=+...
T Consensus       278 ~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~  310 (487)
T KOG0310|consen  278 YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV  310 (487)
T ss_pred             cccceeeEEecCCCceEEEecccceeeeehhhc
Confidence            567999999977  7999999999888775443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.4e-28  Score=203.29  Aligned_cols=232  Identities=17%  Similarity=0.156  Sum_probs=196.6

Q ss_pred             ccccEEEEEEccC-CCEEEEEeCCCeEEEEECCC-CcEEEEeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCc
Q 009993          141 HTEAVLTVFVLAS-AKLLFTSGYDSIVRMWHLED-GFSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVL  215 (520)
Q Consensus       141 h~~~V~~l~~~~~-~~~l~sgs~dg~v~vwd~~~-~~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~  215 (520)
                      -.+.+..++|+++ .+.+++++.||++++||+.. ..++..++.|...|.++.   .++..+++++.|++|++|+...+ 
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~-  137 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP-  137 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC-
Confidence            3578899999985 56888999999999999643 367888999999999997   45678889999999999997543 


Q ss_pred             ceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe---eCCCE
Q 009993          216 PHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA---PHDTT  288 (520)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~---~~~~~  288 (520)
                                  ..+.++.+|...|....|   .++.++++|.|+++++||++.......+. |...+.++.   .+.+.
T Consensus       138 ------------~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~v  205 (311)
T KOG0277|consen  138 ------------NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNV  205 (311)
T ss_pred             ------------cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcE
Confidence                        467779999999999999   66899999999999999998654333355 888898887   67889


Q ss_pred             EEEEc-CCeEEEEECCCCe-eeEEeecccccceEEEEecCCC-CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcC
Q 009993          289 VASTS-GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG  365 (520)
Q Consensus       289 l~~~~-d~~i~iwd~~~~~-~~~~~~~~~~~~i~~l~~s~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  365 (520)
                      +++|+ |+.|++||+++-+ ++..+ .+|.-.|..++|||.. ..|++++.|-+++|||...+.     ..+.+...|+.
T Consensus       206 l~Tg~vd~~vr~wDir~~r~pl~eL-~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d-----s~~e~~~~HtE  279 (311)
T KOG0277|consen  206 LATGGVDNLVRGWDIRNLRTPLFEL-NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD-----SAIETVDHHTE  279 (311)
T ss_pred             EEecCCCceEEEEehhhccccceee-cCCceEEEEEecCcchhhHhhhccccceEEecccccch-----hhhhhhhccce
Confidence            99999 9999999999864 56666 4899999999999954 688999999999999998654     45667778999


Q ss_pred             CEEEEEec---CCEEEEEeCCCcEEEEeC
Q 009993          366 PVNSLAFE---FPWLVSAAGDGKLSLIDV  391 (520)
Q Consensus       366 ~v~~l~~~---~~~l~s~s~dg~i~vwd~  391 (520)
                      -|..+.|+   |.++++.+.|+.++||+.
T Consensus       280 Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  280 FVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             EEeccccccccCceeeecccccceeeecc
Confidence            99999995   589999999999999984

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=1e-27  Score=226.68  Aligned_cols=269  Identities=24%  Similarity=0.395  Sum_probs=213.5

Q ss_pred             hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEE--EeCCCCceEEE-Ee---cCCCEEEEEeCCCcEE
Q 009993          134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA--SSKPLGCTIRA-VA---ADKKLLVAGGTDGFIH  207 (520)
Q Consensus       134 ~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~--~~~~~~~~v~~-~~---~~~~~l~sg~~dg~i~  207 (520)
                      +.+.+.||...|..+++.+ +..++++|.||++++|+-..++.+.  .+.+|...+.. ++   .++..+++|+.|++|.
T Consensus         6 ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~   84 (745)
T KOG0301|consen    6 LSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII   84 (745)
T ss_pred             eEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence            4577899999999998864 4579999999999999976555443  35555554433 32   4556799999999999


Q ss_pred             EEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--
Q 009993          208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--  283 (520)
Q Consensus       208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--  283 (520)
                      +|...+.             .+...+.+|...|.+++. ....+++||.|.++++|-.  +++...+. |+..|.++.  
T Consensus        85 v~~~~~~-------------~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l  149 (745)
T KOG0301|consen   85 VFKLSQA-------------EPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASL  149 (745)
T ss_pred             EEecCCC-------------CchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeec
Confidence            9998664             467789999999999997 4445999999999999986  44555565 999999988  


Q ss_pred             eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecC
Q 009993          284 PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP  362 (520)
Q Consensus       284 ~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  362 (520)
                      +.+ .+++|+ |.+|++|.-  ++.++++. +|...|+.+++-+++ .+++++.||.|++|++ ++      ..+.++.+
T Consensus       150 ~e~-~~vTgsaDKtIklWk~--~~~l~tf~-gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~g------e~l~~~~g  217 (745)
T KOG0301|consen  150 PEN-TYVTGSADKTIKLWKG--GTLLKTFS-GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DG------EVLLEMHG  217 (745)
T ss_pred             CCC-cEEeccCcceeeeccC--Cchhhhhc-cchhheeeeEEecCC-CeEeecCCceEEEEec-cC------ceeeeeec
Confidence            455 777777 999999986  67788887 699999999998765 4779999999999999 44      57889999


Q ss_pred             CcCCEEEEEe--cCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEec-CCEEEEe
Q 009993          363 HTGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG-ADRIVCG  439 (520)
Q Consensus       363 h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~sg  439 (520)
                      |+.-|++++.  +.+.+++++.|++++||+....                     ...+.-.+..++++..- ..-|++|
T Consensus       218 htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~---------------------~q~I~lPttsiWsa~~L~NgDIvvg  276 (745)
T KOG0301|consen  218 HTNFVYSISMALSDGLIVSTGEDRTLRIWKKDEC---------------------VQVITLPTTSIWSAKVLLNGDIVVG  276 (745)
T ss_pred             cceEEEEEEecCCCCeEEEecCCceEEEeecCce---------------------EEEEecCccceEEEEEeeCCCEEEe
Confidence            9999999995  4579999999999999998632                     22223333456665543 3468999


Q ss_pred             cCCCeEEEEeCC
Q 009993          440 GEEGIVRIWNFS  451 (520)
Q Consensus       440 ~~Dg~v~iwd~~  451 (520)
                      ++||.||||..+
T Consensus       277 ~SDG~VrVfT~~  288 (745)
T KOG0301|consen  277 GSDGRVRVFTVD  288 (745)
T ss_pred             ccCceEEEEEec
Confidence            999999999987

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=8.1e-27  Score=232.02  Aligned_cols=291  Identities=19%  Similarity=0.259  Sum_probs=229.7

Q ss_pred             ccccEEEEEEccCCCEEEEEe--CCCeEEEEECCC------------CcEEEEeCCCCceEEEE--ecCCCEEEEEeCCC
Q 009993          141 HTEAVLTVFVLASAKLLFTSG--YDSIVRMWHLED------------GFSIASSKPLGCTIRAV--AADKKLLVAGGTDG  204 (520)
Q Consensus       141 h~~~V~~l~~~~~~~~l~sgs--~dg~v~vwd~~~------------~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg  204 (520)
                      +...|.+++.+|+|..++||+  .|+.++||+.+.            .+.+.+...|...|.|+  ++||.+||+|+.|+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~   91 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR   91 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence            456799999999999999999  899999998742            23445667788888776  59999999999999


Q ss_pred             cEEEEEccc-Ccceeee----ccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-ec
Q 009993          205 FIHCWRAVE-VLPHLFD----ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HS  276 (520)
Q Consensus       205 ~i~vwd~~~-~~~~~~~----~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~  276 (520)
                      .|.+|+... +....+.    ....+..+....+.+|.+.|.+++|  ++.++++++.|++|.+||..+.+.+.++. |.
T Consensus        92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~  171 (942)
T KOG0973|consen   92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ  171 (942)
T ss_pred             eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccc
Confidence            999999874 1111111    1122456678889999999999999  67899999999999999999999999998 99


Q ss_pred             cCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecc-----cccceEEEEecCCCCEEEEEeC----CCeEEEEE
Q 009993          277 DWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGA-----HVGNTKSLARSHTGDFLFTGGE----DGAIHMYE  344 (520)
Q Consensus       277 ~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~-----~~~~i~~l~~s~~~~~l~tg~~----dg~i~iwd  344 (520)
                      ..|..+.  |-|+++++-+ |++|++|++.+....+.+...     -...+..+.|+|||++|++...    -.++.|.+
T Consensus       172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie  251 (942)
T KOG0973|consen  172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE  251 (942)
T ss_pred             ccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEe
Confidence            9998887  8899999988 899999998876666665421     2335788999999999998533    34588888


Q ss_pred             cccCccccceeeeeeecCCcCCEEEEEecC-------C------------EEEEEeCCCcEEEEeCCcccccCCCCCCCc
Q 009993          345 IINDCTEANVLLVATWIPHTGPVNSLAFEF-------P------------WLVSAAGDGKLSLIDVRKLLRSGRPTSGKR  405 (520)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-------~------------~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  405 (520)
                      -.+.      +.-..+.||.+++.++.|+|       .            .+|+|+.|++|.||.....           
T Consensus       252 R~tW------k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~-----------  314 (942)
T KOG0973|consen  252 RGTW------KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP-----------  314 (942)
T ss_pred             cCCc------eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC-----------
Confidence            7666      66778899999999999975       2            6789999999999998653           


Q ss_pred             eeeeeecCCCcccccCcceeeEEEEec--CCEEEEecCCCeEEEEeCCchHh
Q 009993          406 VSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQAFE  455 (520)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~~~~~  455 (520)
                             .+.....+-...+|..++|+  |-.|..+|.||+|.+..+++...
T Consensus       315 -------RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El  359 (942)
T KOG0973|consen  315 -------RPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL  359 (942)
T ss_pred             -------CchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence                   22222222233445555554  66999999999999999987554

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=8.2e-28  Score=214.19  Aligned_cols=247  Identities=17%  Similarity=0.240  Sum_probs=208.0

Q ss_pred             CCCCcccHH------HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCC
Q 009993          124 GFSDDKSWK------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKK  195 (520)
Q Consensus       124 ~~~~~~~W~------~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~  195 (520)
                      .+...+.|+      +++.+|.|-.++|+.++|.++++++++++.|+.+++|++...+...++.+|...|+++.  ....
T Consensus       195 ~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~  274 (459)
T KOG0288|consen  195 SDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHS  274 (459)
T ss_pred             hhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhcccc
Confidence            345568998      57889999999999999999999999999999999999999999999999999999987  3344


Q ss_pred             EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeee
Q 009993          196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRH  275 (520)
Q Consensus       196 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~  275 (520)
                      .+++|+.|.+|+.||+....+             ..++ -....+.+|...+..+++|-.|++|++||.++..+......
T Consensus       275 ~vVsgs~DRtiK~WDl~k~~C-------------~kt~-l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~  340 (459)
T KOG0288|consen  275 RVVSGSADRTIKLWDLQKAYC-------------SKTV-LPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPL  340 (459)
T ss_pred             ceeeccccchhhhhhhhhhhe-------------eccc-cccccccceEecceeeeecccccceEEEeccCCceeeEeec
Confidence            499999999999999976421             1111 23445666666778899999999999999999999999997


Q ss_pred             ccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeec---ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCc
Q 009993          276 SDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG---AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC  349 (520)
Q Consensus       276 ~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~---~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~  349 (520)
                      .+.|+++.  +++..+.+++ |.++.+.|+++.+....+..   ......+.+.|||++.|+++|+.||.|+||++.++ 
T Consensus       341 gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-  419 (459)
T KOG0288|consen  341 GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-  419 (459)
T ss_pred             CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc-
Confidence            88999988  8888888888 99999999999887776652   11334889999999999999999999999999999 


Q ss_pred             cccceeeeeeecCCcC--CEEEEEecC--CEEEEEeCCCcEEEEe
Q 009993          350 TEANVLLVATWIPHTG--PVNSLAFEF--PWLVSAAGDGKLSLID  390 (520)
Q Consensus       350 ~~~~~~~~~~~~~h~~--~v~~l~~~~--~~l~s~s~dg~i~vwd  390 (520)
                           ++...+.....  .|++++|+|  ..|++++.++.+.+|.
T Consensus       420 -----KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  420 -----KLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             -----eEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence                 56655555444  599999976  7999999999999993

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2.5e-27  Score=214.03  Aligned_cols=286  Identities=21%  Similarity=0.307  Sum_probs=215.5

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEE----E-------------e-CCCCceEEEE--ecCC
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA----S-------------S-KPLGCTIRAV--AADK  194 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~----~-------------~-~~~~~~v~~~--~~~~  194 (520)
                      ++.+..|.-+|+||+++|++++.++++.|++|.=|++.+|+...    +             - +.|...+.++  ++|+
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            56678899999999999999999999999999999998886331    1             0 2555556554  5999


Q ss_pred             CEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEE
Q 009993          195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKV  272 (520)
Q Consensus       195 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~  272 (520)
                      ++|++|+.|..|.||+..+..             .+..+.+|.+.|.+++|  ..+.+++++.|++|++|+++....+. 
T Consensus       215 kylatgg~d~~v~Iw~~~t~e-------------hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve-  280 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLE-------------HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVE-  280 (479)
T ss_pred             cEEEecCCCceEEEecCcccc-------------hhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHH-
Confidence            999999999999999998763             56668999999999999  55789999999999999987654332 


Q ss_pred             eeeccCEEEEeeCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccc
Q 009993          273 LRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA  352 (520)
Q Consensus       273 ~~~~~~v~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~  352 (520)
                                                           ++. +|...|..+.....++.+.+|+.|+++++|++...    
T Consensus       281 -------------------------------------tly-GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee----  318 (479)
T KOG0299|consen  281 -------------------------------------TLY-GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE----  318 (479)
T ss_pred             -------------------------------------HHh-CCccceeeechhcccceEEeccccceeEEEecccc----
Confidence                                                 233 69999999988888888888999999999999544    


Q ss_pred             ceeeeeeecCCcCCEEEEEe-cCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCccccc-CcceeeEEEE
Q 009993          353 NVLLVATWIPHTGPVNSLAF-EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH-GFECNLLSVD  430 (520)
Q Consensus       353 ~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~  430 (520)
                         ....+.+|.+.+-|++| +..++++|+.||.|.+|++.+....+.......+.      +...... ..-...+++.
T Consensus       319 ---sqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~------~~~~~~~~~~Witsla~i  389 (479)
T KOG0299|consen  319 ---SQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI------PELDPVNGNFWITSLAVI  389 (479)
T ss_pred             ---ceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeecccccc------CCccccccccceeeeEec
Confidence               34456789999999999 67899999999999999998764443322111110      0000000 1123344455


Q ss_pred             ecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccc
Q 009993          431 IGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCS  492 (520)
Q Consensus       431 ~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s  492 (520)
                      +..+++++|+.+|.|++|.++++...-.+...+.       ..--+..++|+++|+++.++.
T Consensus       390 ~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-------~~GfVNsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  390 PGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-------LVGFVNSLAFSNSGKRIVAGI  444 (479)
T ss_pred             ccCceEEecCCCCceEEEEecCCccccceeeecc-------cccEEEEEEEccCCCEEEEec
Confidence            6667999999999999999998854222222111       223367899999999887763

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=2.4e-28  Score=211.01  Aligned_cols=261  Identities=20%  Similarity=0.293  Sum_probs=218.2

Q ss_pred             hhhcCCCCCCCC-CCCCCCCcccHH----Hh--------hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 009993          109 CERWGLPIASAP-LGAGFSDDKSWK----EL--------IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF  175 (520)
Q Consensus       109 ~~~~~~~~~~~~-~~~~~~~~~~W~----~~--------~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~  175 (520)
                      |.+|+ |++.++ ..+-+.....|+    ++        ...|.-|.++|.|+.|+.|...|++|+.||.|+||.+.+|.
T Consensus       218 cA~FS-PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~  296 (508)
T KOG0275|consen  218 CARFS-PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ  296 (508)
T ss_pred             heeeC-CCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecch
Confidence            45565 444433 233345557788    22        33455688999999999999999999999999999999999


Q ss_pred             EEEEeC-CCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEE
Q 009993          176 SIASSK-PLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRI  250 (520)
Q Consensus       176 ~~~~~~-~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l  250 (520)
                      +++.|. .|...|+|++  .|+..+++++.|.++++--+.+|.             ....+.||.+.|+...|  +|..+
T Consensus       297 ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-------------~LKEfrGHsSyvn~a~ft~dG~~i  363 (508)
T KOG0275|consen  297 CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-------------CLKEFRGHSSYVNEATFTDDGHHI  363 (508)
T ss_pred             HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch-------------hHHHhcCccccccceEEcCCCCeE
Confidence            999986 7888887766  789999999999999999887763             66678899999999999  88999


Q ss_pred             EEEecCCeEEEEECCCCcEEEEee---eccCEEEEe---eCCCEEEEEc-CCeEEEEECCCCeeeEEeeccc--ccceEE
Q 009993          251 YSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA---PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAH--VGNTKS  321 (520)
Q Consensus       251 ~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~---~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~--~~~i~~  321 (520)
                      ++++.||+|++|+..+.+|+.+++   ...+|+++-   .+...++++. .++|+|.++. |+.++.+..+.  .+...+
T Consensus       364 isaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~  442 (508)
T KOG0275|consen  364 ISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFIN  442 (508)
T ss_pred             EEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEE
Confidence            999999999999999999999987   455677766   4567778887 8999999875 67777776443  456778


Q ss_pred             EEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEe
Q 009993          322 LARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLID  390 (520)
Q Consensus       322 l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd  390 (520)
                      .+.+|.|.++.+.++|+.++.|.+.++      ....++..|...|..++-+|  +.|++-+.||.+++|.
T Consensus       443 ~~lSpkGewiYcigED~vlYCF~~~sG------~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  443 AILSPKGEWIYCIGEDGVLYCFSVLSG------KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EEecCCCcEEEEEccCcEEEEEEeecC------ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            889999999999999999999999999      77888889999999999987  7899999999999995

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=8.4e-27  Score=212.27  Aligned_cols=285  Identities=19%  Similarity=0.284  Sum_probs=219.9

Q ss_pred             CCcccHHHh-hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEE--ecCCCEEEEEeC
Q 009993          126 SDDKSWKEL-IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGT  202 (520)
Q Consensus       126 ~~~~~W~~~-~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~  202 (520)
                      ...+.|++. ...+....+.|.+++|+|...+=++....-.+.+|+..+....+++......+.+.  ..||.++++|..
T Consensus         9 ~e~~~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~   88 (487)
T KOG0310|consen    9 PEIRYWRQETFPPVHKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDE   88 (487)
T ss_pred             ccchhhhhhcccccccccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCC
Confidence            445678754 23334455789999999965432322334669999998887777665555555554  488999999999


Q ss_pred             CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcEEEEee-eccC
Q 009993          203 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDW  278 (520)
Q Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~  278 (520)
                      .|.|+++|..+             ......+.+|+.+|..+.|   ++..+++|+.|+.+++||+.+......+. |.+.
T Consensus        89 sG~V~vfD~k~-------------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDY  155 (487)
T KOG0310|consen   89 SGHVKVFDMKS-------------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDY  155 (487)
T ss_pred             cCcEEEecccc-------------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcce
Confidence            99999999644             2355678899999999998   66789999999999999999988654554 9999


Q ss_pred             EEEEe---eCCCEEEEEc-CCeEEEEECCCC-eeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccc
Q 009993          279 VYGLA---PHDTTVASTS-GSDVYIWDTNSG-CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN  353 (520)
Q Consensus       279 v~~~~---~~~~~l~~~~-d~~i~iwd~~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~  353 (520)
                      |.|.+   .++.++++|+ ||.|++||++.. ..+..+  .|..+|..+.+-|.|..+++++. ..|++||+-++.    
T Consensus       156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el--nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~----  228 (487)
T KOG0310|consen  156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL--NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGG----  228 (487)
T ss_pred             eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe--cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCc----
Confidence            99988   4566889999 999999999987 566666  49999999999999999998864 469999999764    


Q ss_pred             eeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEE-
Q 009993          354 VLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD-  430 (520)
Q Consensus       354 ~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-  430 (520)
                       +.+..+..|...|+|+.+..  ..|++|+-|+.|++||+.+......                    -....+|++++ 
T Consensus       229 -qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s--------------------~~~~~pvLsiav  287 (487)
T KOG0310|consen  229 -QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHS--------------------WKYPGPVLSIAV  287 (487)
T ss_pred             -eehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEe--------------------eecccceeeEEe
Confidence             45666666999999999954  8999999999999999776432221                    12334555555 


Q ss_pred             -ecCCEEEEecCCCeEEEEeCC
Q 009993          431 -IGADRIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       431 -~~~~~l~sg~~Dg~v~iwd~~  451 (520)
                       ++++.++.|..||.+.+=+..
T Consensus       288 s~dd~t~viGmsnGlv~~rr~~  309 (487)
T KOG0310|consen  288 SPDDQTVVIGMSNGLVSIRRRE  309 (487)
T ss_pred             cCCCceEEEecccceeeeehhh
Confidence             455699999999988776443

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.7e-28  Score=226.28  Aligned_cols=230  Identities=23%  Similarity=0.363  Sum_probs=196.4

Q ss_pred             EEEEc-cCCCEEEEEeCCCeEEEEECCCCc------EEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcce
Q 009993          147 TVFVL-ASAKLLFTSGYDSIVRMWHLEDGF------SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPH  217 (520)
Q Consensus       147 ~l~~~-~~~~~l~sgs~dg~v~vwd~~~~~------~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~  217 (520)
                      .+..+ |.+++|+|||.||.|++|++....      .+.+++.|...|..+.  -+++.|+++|.|-+|++|+...+.  
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~--  106 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN--  106 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc--
Confidence            44444 467789999999999999986432      3667788888877655  778899999999999999986542  


Q ss_pred             eeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCC--cEEEEee----------eccCEEEE
Q 009993          218 LFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALL--KCLKVLR----------HSDWVYGL  282 (520)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~----------~~~~v~~~  282 (520)
                               -.+..++..|...|.|+++   +...+++|+-|+.|.+||+.++  +.+..+.          +...|+++
T Consensus       107 ---------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL  177 (735)
T KOG0308|consen  107 ---------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL  177 (735)
T ss_pred             ---------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence                     2356677889999999999   6678999999999999999987  2333221          56788998


Q ss_pred             e--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeee
Q 009993          283 A--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT  359 (520)
Q Consensus       283 ~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~  359 (520)
                      +  +.+..+++|+ .+.+++||.++++.+..+. ||...|.++..++||..+++++.||+|++||+...      .++.+
T Consensus       178 A~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ------rCl~T  250 (735)
T KOG0308|consen  178 AMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ------RCLAT  250 (735)
T ss_pred             ecCCcceEEEecCcccceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeecccc------ceeee
Confidence            8  5566888888 8999999999999999998 89999999999999999999999999999999998      89999


Q ss_pred             ecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993          360 WIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       360 ~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  394 (520)
                      +..|...|+++..+|  .++++|+.||.|..=|+++.
T Consensus       251 ~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  251 YIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             EEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            999999999999988  69999999999999999985

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.7e-26  Score=197.86  Aligned_cols=256  Identities=19%  Similarity=0.308  Sum_probs=205.8

Q ss_pred             EEEEeCCCeEEEEECCCC------------cEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCC
Q 009993          157 LFTSGYDSIVRMWHLEDG------------FSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGS  224 (520)
Q Consensus       157 l~sgs~dg~v~vwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~  224 (520)
                      +++|++...|.=+++.-.            .++..+..|..++.+++-++.++++|+.|-+|+|||+...          
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~----------   73 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKR----------   73 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccch----------
Confidence            667777776666665321            2244567899999999999999999999999999998764          


Q ss_pred             ccccceEEeccCCCCeEEEEEcC----CEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCe
Q 009993          225 EKQNTQFRLWEHEGPITSLALDL----TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSD  296 (520)
Q Consensus       225 ~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~  296 (520)
                         .....+..|.+.|+++.|.+    +.|++|+.||.|.+|+....+++..++ |.+.|+.++  |.+++.++.+ |+.
T Consensus        74 ---~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~  150 (362)
T KOG0294|consen   74 ---KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQV  150 (362)
T ss_pred             ---hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCce
Confidence               35556778999999999944    379999999999999999999999998 888899988  8888877766 999


Q ss_pred             EEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe-cCC
Q 009993          297 VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF-EFP  375 (520)
Q Consensus       297 i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~  375 (520)
                      ++.||+-+|+.-......+.  .+.+.|+|.|.+++.++.++ |-+|.+.+.      .....+. ....+.++.| +..
T Consensus       151 lr~WNLV~Gr~a~v~~L~~~--at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A------~v~~~i~-~~~r~l~~~~l~~~  220 (362)
T KOG0294|consen  151 LRTWNLVRGRVAFVLNLKNK--ATLVSWSPQGDHFVVSGRNK-IDIYQLDNA------SVFREIE-NPKRILCATFLDGS  220 (362)
T ss_pred             eeeehhhcCccceeeccCCc--ceeeEEcCCCCEEEEEeccE-EEEEecccH------hHhhhhh-ccccceeeeecCCc
Confidence            99999999987666653333  34499999999998887765 889998876      2332222 2245778888 568


Q ss_pred             EEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEec----CCEEEEecCCCeEEEEeCC
Q 009993          376 WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG----ADRIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       376 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~sg~~Dg~v~iwd~~  451 (520)
                      .|++|+.|+.|.+||-.+                   ..+...+.+|...|-++.+-    +.+|+|+|.||.|+|||++
T Consensus       221 ~L~vG~d~~~i~~~D~ds-------------------~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~  281 (362)
T KOG0294|consen  221 ELLVGGDNEWISLKDTDS-------------------DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID  281 (362)
T ss_pred             eEEEecCCceEEEeccCC-------------------CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence            999999999999999987                   34555678899888888743    2499999999999999998


Q ss_pred             chH
Q 009993          452 QAF  454 (520)
Q Consensus       452 ~~~  454 (520)
                      ...
T Consensus       282 ~~~  284 (362)
T KOG0294|consen  282 MET  284 (362)
T ss_pred             ccc
Confidence            763

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=4.6e-26  Score=204.28  Aligned_cols=271  Identities=20%  Similarity=0.247  Sum_probs=224.6

Q ss_pred             ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeee
Q 009993          143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFD  220 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  220 (520)
                      ..|+++...|....++||+.|.++.++|..+++.+..++||...|..+.  ++...+++++.|..|+||.....      
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~------  293 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS------  293 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc------
Confidence            5788998888878999999999999999999999999999999998876  78889999999999999997543      


Q ss_pred             ccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeecc---CEEEEe--eCCCEEEEEc
Q 009993          221 ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSD---WVYGLA--PHDTTVASTS  293 (520)
Q Consensus       221 ~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~---~v~~~~--~~~~~l~~~~  293 (520)
                             ........|..+|+.+..  .+.||++++.||+..+.|++++.++....+..   .+++..  |||.++.+|.
T Consensus       294 -------s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt  366 (506)
T KOG0289|consen  294 -------SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT  366 (506)
T ss_pred             -------cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC
Confidence                   244556689999999998  78999999999999999999999998887642   255554  9999999999


Q ss_pred             -CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecC-CcCCEEEEE
Q 009993          294 -GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP-HTGPVNSLA  371 (520)
Q Consensus       294 -d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~  371 (520)
                       |+.|+|||+.++..+..|. +|.++|..++|+.+|-+|+++++|+.|++||++..      +...++.- ....|.++.
T Consensus       367 ~d~~vkiwdlks~~~~a~Fp-ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl------~n~kt~~l~~~~~v~s~~  439 (506)
T KOG0289|consen  367 PDGVVKIWDLKSQTNVAKFP-GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL------KNFKTIQLDEKKEVNSLS  439 (506)
T ss_pred             CCceEEEEEcCCccccccCC-CCCCceeEEEeccCceEEEEEecCCeEEEEEehhh------cccceeeccccccceeEE
Confidence             9999999999999999997 69999999999999999999999999999999987      33444332 223789999


Q ss_pred             ec--CCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEEecCCCeEEE
Q 009993          372 FE--FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRI  447 (520)
Q Consensus       372 ~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~i  447 (520)
                      |+  +.+|+.++.|=.|++++-.+..                 -.....+..|.+....+.|...  +++++|.|..+++
T Consensus       440 fD~SGt~L~~~g~~l~Vy~~~k~~k~-----------------W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~  502 (506)
T KOG0289|consen  440 FDQSGTYLGIAGSDLQVYICKKKTKS-----------------WTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRL  502 (506)
T ss_pred             EcCCCCeEEeecceeEEEEEeccccc-----------------ceeeehhhhcccccceeeecccceEEeeccchhheEE
Confidence            96  4799999888666666644311                 2223345566666777777655  9999999999998


Q ss_pred             EeC
Q 009993          448 WNF  450 (520)
Q Consensus       448 wd~  450 (520)
                      +.+
T Consensus       503 ~a~  505 (506)
T KOG0289|consen  503 YAL  505 (506)
T ss_pred             eec
Confidence            865

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1.7e-25  Score=219.81  Aligned_cols=237  Identities=17%  Similarity=0.238  Sum_probs=179.3

Q ss_pred             hhccccccEEEEEEcc-CCCEEEEEeCCCeEEEEECCCC-------cEEEEeCCCCceEEEEe--cCC-CEEEEEeCCCc
Q 009993          137 VLYGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDG-------FSIASSKPLGCTIRAVA--ADK-KLLVAGGTDGF  205 (520)
Q Consensus       137 ~l~~h~~~V~~l~~~~-~~~~l~sgs~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~~~--~~~-~~l~sg~~dg~  205 (520)
                      .+.||.+.|++++|+| ++++|++|+.|++|++||+.++       ..+..+.+|...|.++.  |++ ++|++|+.|++
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            4789999999999999 8899999999999999999765       35677889988887766  654 69999999999


Q ss_pred             EEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEE--
Q 009993          206 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVY--  280 (520)
Q Consensus       206 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~--  280 (520)
                      |++||+.++.             ....+.+|...|.+++|  ++.+|++++.|++|++||+++++.+..+. |...+.  
T Consensus       150 VrIWDl~tg~-------------~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~  216 (493)
T PTZ00421        150 VNVWDVERGK-------------AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQR  216 (493)
T ss_pred             EEEEECCCCe-------------EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceE
Confidence            9999997753             44567789999999999  77899999999999999999999888776 554322  


Q ss_pred             EE-eeCCCEEEEEc-----CCeEEEEECCCCe-eeEEeecccccceEEEEecCCCCEEEEEe-CCCeEEEEEcccCcccc
Q 009993          281 GL-APHDTTVASTS-----GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDCTEA  352 (520)
Q Consensus       281 ~~-~~~~~~l~~~~-----d~~i~iwd~~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~tg~-~dg~i~iwd~~~~~~~~  352 (520)
                      ++ .+++..+++++     |+.|++||+++.. ++......+...+....|++++++|++|+ .|+.|++||+.++    
T Consensus       217 ~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~----  292 (493)
T PTZ00421        217 CLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE----  292 (493)
T ss_pred             EEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC----
Confidence            22 25556665532     5899999998764 33333222344566677999999999887 5999999999987    


Q ss_pred             ceeeeeee-cCCcCCEEEEEecCCEEEEEeCCCcEEEEeCC
Q 009993          353 NVLLVATW-IPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       353 ~~~~~~~~-~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~  392 (520)
                        ..+... ..+..++..++|.|.+-+-...--..++|.+.
T Consensus       293 --~~~~~~~~~s~~~~~g~~~~pk~~~dv~~~Ei~r~~~l~  331 (493)
T PTZ00421        293 --RLTFCSSYSSVEPHKGLCMMPKWSLDTRKCEIARFYALT  331 (493)
T ss_pred             --ceEEEeeccCCCCCcceEecccccccccceeeeEEEEec
Confidence              333333 23556788888887544333333334555543

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.6e-26  Score=197.05  Aligned_cols=236  Identities=18%  Similarity=0.277  Sum_probs=202.8

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecC----CCEEEEEeCCCcEEEEE
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAAD----KKLLVAGGTDGFIHCWR  210 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~l~sg~~dg~i~vwd  210 (520)
                      .-.+..|.+.|++++.  ++.++|+||.|.+|+|||+.+...+..+-.|.+.|+++...    ...|++|+.||.|.+|+
T Consensus        36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~  113 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR  113 (362)
T ss_pred             cccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence            4457899999999999  49999999999999999999999999999999999998732    23799999999999999


Q ss_pred             cccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--eccCEEEEeeCC
Q 009993          211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLAPHD  286 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~  286 (520)
                      ...             ......+.+|.+.|+.++.  .++..++.+.|+.++.||+-+|+.-...+  +......+.+.|
T Consensus       114 ~~~-------------W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~G  180 (362)
T KOG0294|consen  114 VGS-------------WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQG  180 (362)
T ss_pred             cCC-------------eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCC
Confidence            744             4577889999999999999  56788899999999999999988766665  556666666999


Q ss_pred             CEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCC
Q 009993          287 TTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP  366 (520)
Q Consensus       287 ~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  366 (520)
                      .+++.+....|-+|.+.+......+.  ....+.++.|. ++..|++|++|+.|.+||....      .+...+.+|...
T Consensus       181 d~F~v~~~~~i~i~q~d~A~v~~~i~--~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~------~~~~~~~AH~~R  251 (362)
T KOG0294|consen  181 DHFVVSGRNKIDIYQLDNASVFREIE--NPKRILCATFL-DGSELLVGGDNEWISLKDTDSD------TPLTEFLAHENR  251 (362)
T ss_pred             CEEEEEeccEEEEEecccHhHhhhhh--ccccceeeeec-CCceEEEecCCceEEEeccCCC------ccceeeecchhh
Confidence            99999999999999998877766664  33556677775 6778999999999999999887      788889999999


Q ss_pred             EEEEEe--cC--CEEEEEeCCCcEEEEeCCcc
Q 009993          367 VNSLAF--EF--PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       367 v~~l~~--~~--~~l~s~s~dg~i~vwd~~~~  394 (520)
                      |-++.+  +|  .+|+++|.||.|+|||++..
T Consensus       252 VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  252 VKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            999996  22  59999999999999999874

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2.5e-25  Score=183.00  Aligned_cols=240  Identities=20%  Similarity=0.244  Sum_probs=195.4

Q ss_pred             hhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcE-----EEEeCCCCceEEEEe------cCCCEEEEEeC-CC
Q 009993          137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS-----IASSKPLGCTIRAVA------ADKKLLVAGGT-DG  204 (520)
Q Consensus       137 ~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~-----~~~~~~~~~~v~~~~------~~~~~l~sg~~-dg  204 (520)
                      .-+.|.+.|+|.+|+|+|+++++|+.|++|++.......+     -..+.-|...|..++      ..+..|++++. |.
T Consensus        84 r~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc  163 (350)
T KOG0641|consen   84 RNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC  163 (350)
T ss_pred             eccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence            3467999999999999999999999999999987654322     224556888888776      23446666543 56


Q ss_pred             cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEE-EcCCEEEEEecCCeEEEEECCCCcEEEEee---e-----
Q 009993          205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA-LDLTRIYSGSWDMTVRVWDRALLKCLKVLR---H-----  275 (520)
Q Consensus       205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~-----  275 (520)
                      .|++-|..+|.             ....+.+|++.|.++- |++-.+++|+.|.+|++||++-..++.++.   |     
T Consensus       164 ~iy~tdc~~g~-------------~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gle  230 (350)
T KOG0641|consen  164 KIYITDCGRGQ-------------GFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLE  230 (350)
T ss_pred             eEEEeecCCCC-------------cceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcc
Confidence            66666665553             5667889999999875 499999999999999999999999998885   2     


Q ss_pred             ccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccc
Q 009993          276 SDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA  352 (520)
Q Consensus       276 ~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~  352 (520)
                      ...|.+++  |.|+++++|. |....+||++.++.++.+. +|...|.++.|+|...++++++.|..|++-|+...-.  
T Consensus       231 ssavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~-phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla--  307 (350)
T KOG0641|consen  231 SSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH-PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLA--  307 (350)
T ss_pred             cceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC-CCccceeEEEeCCCceEEEEecccceEEEeecccchh--
Confidence            24566655  9999999999 9999999999999999998 6999999999999999999999999999999876521  


Q ss_pred             ceeeeeeecCCcCCEEEEEecCC--EEEEEeCCCcEEEEeCC
Q 009993          353 NVLLVATWIPHTGPVNSLAFEFP--WLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       353 ~~~~~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~  392 (520)
                      .-.++.....|...+..+.|+|.  .+++.+.|.++.+|-+.
T Consensus       308 ~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  308 HELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             hcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            11345566789999999999984  67899999999999764

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.7e-26  Score=217.11  Aligned_cols=248  Identities=21%  Similarity=0.222  Sum_probs=215.2

Q ss_pred             CcccHHHh----hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC-CCceEEEEecCCCEEEEEe
Q 009993          127 DDKSWKEL----IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP-LGCTIRAVAADKKLLVAGG  201 (520)
Q Consensus       127 ~~~~W~~~----~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sg~  201 (520)
                      ...+|+..    ......+.+.|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |...|-+++.++..+.+|+
T Consensus       198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGs  277 (484)
T KOG0305|consen  198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGS  277 (484)
T ss_pred             eEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEec
Confidence            44677732    222334489999999999999999999999999999999999999998 9999999999999999999


Q ss_pred             CCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccC
Q 009993          202 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDW  278 (520)
Q Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~  278 (520)
                      .|+.|..+|++....            ....+.+|...|..+.|  ++.++++|+.|+.+.|||....+.+..+. |...
T Consensus       278 r~~~I~~~dvR~~~~------------~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aA  345 (484)
T KOG0305|consen  278 RDGKILNHDVRISQH------------VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAA  345 (484)
T ss_pred             CCCcEEEEEEecchh------------hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEecccee
Confidence            999999999977531            12247889999999999  88999999999999999997777777665 9999


Q ss_pred             EEEEe---eCCCEEEEEc---CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEE--EeCCCeEEEEEcccCcc
Q 009993          279 VYGLA---PHDTTVASTS---GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT--GGEDGAIHMYEIINDCT  350 (520)
Q Consensus       279 v~~~~---~~~~~l~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~t--g~~dg~i~iwd~~~~~~  350 (520)
                      |.+++   ....+||+|+   |+.|++||..++..+..+.  ..+.|..|.|++..+-|++  |..++.|.||+..+.  
T Consensus       346 VKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd--tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~--  421 (484)
T KOG0305|consen  346 VKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD--TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM--  421 (484)
T ss_pred             eeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc--cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc--
Confidence            99988   4567888876   7999999999999999886  6789999999999877776  555778999999997  


Q ss_pred             ccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993          351 EANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       351 ~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  394 (520)
                          ..+..+.+|...|..++++|  ..+++|+.|.++++|++-..
T Consensus       422 ----~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  422 ----KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             ----ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence                78999999999999999987  69999999999999999763

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6.7e-27  Score=219.63  Aligned_cols=340  Identities=19%  Similarity=0.268  Sum_probs=250.3

Q ss_pred             hcCCCCCCC-CCCCCCCCcccHH----------HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC--cEE
Q 009993          111 RWGLPIASA-PLGAGFSDDKSWK----------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG--FSI  177 (520)
Q Consensus       111 ~~~~~~~~~-~~~~~~~~~~~W~----------~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~--~~~  177 (520)
                      +...|..++ ..+..+...+.|+          ..+..++.|++.|..+.+..+++.|+++|.|-+|++|+...+  -++
T Consensus        31 q~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~  110 (735)
T KOG0308|consen   31 QLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCM  110 (735)
T ss_pred             cccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhH
Confidence            334455552 2333355568887          257889999999999999999999999999999999999877  577


Q ss_pred             EEeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEec-cCCCCeEEEEEcC--CEEE
Q 009993          178 ASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLALDL--TRIY  251 (520)
Q Consensus       178 ~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~--~~l~  251 (520)
                      .++..|...|.|++   .+...+|+|+.|+.|.+||+.++....   ...........+. |+..+|.+++.++  ..++
T Consensus       111 stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l---~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~iv  187 (735)
T KOG0308|consen  111 STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATL---VASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIV  187 (735)
T ss_pred             hhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhh---hhhccccccccCCCCCccceeeeecCCcceEEE
Confidence            88899999999987   578899999999999999999874311   1111122333344 8999999999955  4899


Q ss_pred             EEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCC
Q 009993          252 SGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT  327 (520)
Q Consensus       252 s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~  327 (520)
                      +|+..+.+++||.++.+.+..++ |.+.|.++-  .+|..+++++ ||+|++||+...+++.++. .|...|+++..+|+
T Consensus       188 sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~-vH~e~VWaL~~~~s  266 (735)
T KOG0308|consen  188 SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI-VHKEGVWALQSSPS  266 (735)
T ss_pred             ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE-eccCceEEEeeCCC
Confidence            99999999999999998888777 999999877  8899999998 9999999999999999987 69999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEec--CCEEEEEeCCCcEEEEeCCcccccCCC-----
Q 009993          328 GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRKLLRSGRP-----  400 (520)
Q Consensus       328 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~-----  400 (520)
                      -..+++|+.||.|..=|+++..      ....+-....+|..+..+  .+-+-+++.|+.|+-|...........     
T Consensus       267 f~~vYsG~rd~~i~~Tdl~n~~------~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~  340 (735)
T KOG0308|consen  267 FTHVYSGGRDGNIYRTDLRNPA------KSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDF  340 (735)
T ss_pred             cceEEecCCCCcEEecccCCch------hheEeecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCc
Confidence            9999999999999999999862      122222334566666664  344578889999999987643211100     


Q ss_pred             -CCCCceeeeeecCCCcccccC-cceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHh
Q 009993          401 -TSGKRVSRVIEVEPPQRMLHG-FECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRA  460 (520)
Q Consensus       401 -~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~  460 (520)
                       ..............+..+.+| +...-.++--+.+.++|-...|.+.+||+-....++...
T Consensus       341 ~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g  402 (735)
T KOG0308|consen  341 FSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG  402 (735)
T ss_pred             ccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence             000000000000111122222 222222333344599999999999999998887776654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.3e-25  Score=212.64  Aligned_cols=264  Identities=23%  Similarity=0.309  Sum_probs=214.2

Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCc
Q 009993          148 VFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE  225 (520)
Q Consensus       148 l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~  225 (520)
                      ++|+ ..+.|+.|. ...|++|+..++........+...|+++.  ++|.+|++|..+|.|.|||..+.           
T Consensus       183 ldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~-----------  249 (484)
T KOG0305|consen  183 LDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ-----------  249 (484)
T ss_pred             hhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc-----------
Confidence            4565 345666664 56799999999986555554466676665  88999999999999999998664           


Q ss_pred             cccceEEecc-CCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEE-ee-eccCEEEEe--eCCCEEEEEc-CCeEEE
Q 009993          226 KQNTQFRLWE-HEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKV-LR-HSDWVYGLA--PHDTTVASTS-GSDVYI  299 (520)
Q Consensus       226 ~~~~~~~~~~-h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i  299 (520)
                        .....+.+ |...|-+++|++..+.+|+.|+.|..+|++..+.... +. |...|..+.  +++.++++|+ |+.+.|
T Consensus       250 --k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~I  327 (484)
T KOG0305|consen  250 --KKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFI  327 (484)
T ss_pred             --cccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEe
Confidence              34555666 9999999999999999999999999999998776555 44 889999888  8999999999 999999


Q ss_pred             EECCCCeeeEEeecccccceEEEEecC-CCCEEEEE--eCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCE
Q 009993          300 WDTNSGCLLTVVNGAHVGNTKSLARSH-TGDFLFTG--GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPW  376 (520)
Q Consensus       300 wd~~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~tg--~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  376 (520)
                      ||.....++..+. .|...|.+++|+| ...+||+|  +.|++|++||..++      ..+... ...+.|..|.|++.+
T Consensus       328 wd~~~~~p~~~~~-~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g------~~i~~v-dtgsQVcsL~Wsk~~  399 (484)
T KOG0305|consen  328 WDGLSPEPKFTFT-EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG------ARIDSV-DTGSQVCSLIWSKKY  399 (484)
T ss_pred             ccCCCccccEEEe-ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC------cEeccc-ccCCceeeEEEcCCC
Confidence            9998888888887 6999999999999 56688875  45999999999988      445444 345689999998743


Q ss_pred             --EEEE--eCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC--CEEEEecCCCeEEEEeC
Q 009993          377 --LVSA--AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGIVRIWNF  450 (520)
Q Consensus       377 --l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~v~iwd~  450 (520)
                        |+++  ..++.|.||+..+                   ......+.+|...|+.++.++  ..+++|+.|.++++|++
T Consensus       400 kEi~sthG~s~n~i~lw~~ps-------------------~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  400 KELLSTHGYSENQITLWKYPS-------------------MKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL  460 (484)
T ss_pred             CEEEEecCCCCCcEEEEeccc-------------------cceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence              5543  3578999999987                   344556788998888777655  49999999999999999


Q ss_pred             Cch
Q 009993          451 SQA  453 (520)
Q Consensus       451 ~~~  453 (520)
                      -+.
T Consensus       461 f~~  463 (484)
T KOG0305|consen  461 FDE  463 (484)
T ss_pred             cCC
Confidence            875

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=2.1e-24  Score=212.11  Aligned_cols=242  Identities=19%  Similarity=0.236  Sum_probs=183.8

Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEE-------------EEeCCCCceEEEEe--c-CCCEEEEEeCCC
Q 009993          141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI-------------ASSKPLGCTIRAVA--A-DKKLLVAGGTDG  204 (520)
Q Consensus       141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~-------------~~~~~~~~~v~~~~--~-~~~~l~sg~~dg  204 (520)
                      |-..|.....++++..+++++.+.....|+...+..+             ..+.+|...|.++.  | ++++|++|+.||
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            3445566666777777788888887788876544322             13567888888776  6 778999999999


Q ss_pred             cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc---CCEEEEEecCCeEEEEECCCCcEEEEee-eccCEE
Q 009993          205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVY  280 (520)
Q Consensus       205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~  280 (520)
                      +|++||+.++...      .........+.+|...|.+++|+   +++|++|+.|++|++||+++++.+..+. |...|.
T Consensus        99 tIkIWdi~~~~~~------~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~  172 (493)
T PTZ00421         99 TIMGWGIPEEGLT------QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQIT  172 (493)
T ss_pred             EEEEEecCCCccc------cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE
Confidence            9999998764210      01123456788999999999994   3689999999999999999999888887 888999


Q ss_pred             EEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccc-eEEEEecCCCCEEEEEe----CCCeEEEEEcccCcccc
Q 009993          281 GLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGN-TKSLARSHTGDFLFTGG----EDGAIHMYEIINDCTEA  352 (520)
Q Consensus       281 ~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~-i~~l~~s~~~~~l~tg~----~dg~i~iwd~~~~~~~~  352 (520)
                      +++  +++.++++++ |+.|++||+++++.+..+. +|.+. +..+.|.+++..+++++    .|+.|++||+++..   
T Consensus       173 sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~---  248 (493)
T PTZ00421        173 SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA---  248 (493)
T ss_pred             EEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC---
Confidence            887  7899999999 9999999999999888876 57654 45678889888877654    47999999998763   


Q ss_pred             ceeeeeeecCC-cCCEEEEEecC--CEEEEEe-CCCcEEEEeCCcc
Q 009993          353 NVLLVATWIPH-TGPVNSLAFEF--PWLVSAA-GDGKLSLIDVRKL  394 (520)
Q Consensus       353 ~~~~~~~~~~h-~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~~~  394 (520)
                        .++.....+ ...+....|++  ++|++|+ .|+.|++||+.++
T Consensus       249 --~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        249 --SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             --CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence              233333333 33455555654  6788777 5999999999875

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=1.9e-25  Score=215.61  Aligned_cols=352  Identities=18%  Similarity=0.266  Sum_probs=248.9

Q ss_pred             CCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCC-
Q 009993          123 AGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKK-  195 (520)
Q Consensus       123 ~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~-  195 (520)
                      +....-++|+    +++.+++++.+.|+++.=+|-=..++.|..+|+|.++++..++.+.+++...+.|+.++  .||+ 
T Consensus       179 s~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p  258 (910)
T KOG1539|consen  179 SSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNP  258 (910)
T ss_pred             ecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCe
Confidence            4445557887    77999999999999999999889999999999999999999999999987678888887  5566 


Q ss_pred             EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCc----E
Q 009993          196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK----C  269 (520)
Q Consensus       196 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~----~  269 (520)
                      .+++|+..|.+.+||++....            .......|.+.|....|  ....+++++.|..+++|=.+++.    .
T Consensus       259 ~las~~~~G~m~~wDLe~kkl------------~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~  326 (910)
T KOG1539|consen  259 LLASGRSNGDMAFWDLEKKKL------------INVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRL  326 (910)
T ss_pred             eEEeccCCceEEEEEcCCCee------------eeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchh
Confidence            667778889999999976531            12222345566666555  23456666666666655333221    1


Q ss_pred             EEEee-ecc-------------------------------------------------------------CEEEEee---
Q 009993          270 LKVLR-HSD-------------------------------------------------------------WVYGLAP---  284 (520)
Q Consensus       270 ~~~~~-~~~-------------------------------------------------------------~v~~~~~---  284 (520)
                      ++.-. |..                                                             +|..++.   
T Consensus       327 LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~  406 (910)
T KOG1539|consen  327 LRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENA  406 (910)
T ss_pred             eeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccc
Confidence            11100 211                                                             2222221   


Q ss_pred             ----CCCEEEEEc--CCeEEEEECCCCee-eEEeecc----cccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccc
Q 009993          285 ----HDTTVASTS--GSDVYIWDTNSGCL-LTVVNGA----HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN  353 (520)
Q Consensus       285 ----~~~~l~~~~--d~~i~iwd~~~~~~-~~~~~~~----~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~  353 (520)
                          ..+ ++++.  +..++.|+.++... ...+...    ....+++++.++.|++.+.|+..|.|-+|++..+     
T Consensus       407 RE~~W~N-v~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG-----  480 (910)
T KOG1539|consen  407 REKEWDN-VITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG-----  480 (910)
T ss_pred             hhhhhcc-eeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC-----
Confidence                112 33333  56678888776554 2333211    3467899999999999999999999999999999     


Q ss_pred             eeeeeee---cCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceee--------------------
Q 009993          354 VLLVATW---IPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSR--------------------  408 (520)
Q Consensus       354 ~~~~~~~---~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~--------------------  408 (520)
                       .....+   ..|.++|++++.+.  +.+++++.+|.+++||..+.........+.....                    
T Consensus       481 -i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~  559 (910)
T KOG1539|consen  481 -IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIR  559 (910)
T ss_pred             -eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEE
Confidence             555566   48999999999986  6899999999999999998764443333322111                    


Q ss_pred             eeec--CCCcccccCcceeeEEEEecC--CEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccC
Q 009993          409 VIEV--EPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSK  484 (520)
Q Consensus       409 ~~~~--~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  484 (520)
                      +...  ....+.+.||+..+.+++|++  ++|++++.|++||+||+.++..+.-..-.           .....+.|||+
T Consensus       560 vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-----------~~~~sls~SPn  628 (910)
T KOG1539|consen  560 VVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-----------SPCTSLSFSPN  628 (910)
T ss_pred             EEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-----------CcceeeEECCC
Confidence            1111  123566788998888777655  49999999999999999998776543222           22468999999


Q ss_pred             CCcccccccccccCCCCCCcceeeecc
Q 009993          485 GGRTDQCSVAAKKNPMNGNRRSVWHNK  511 (520)
Q Consensus       485 g~~~~~~s~~~~~~~~~~~~~~~~~~~  511 (520)
                      |..+|++.+       +.....+|.|+
T Consensus       629 gD~LAT~Hv-------d~~gIylWsNk  648 (910)
T KOG1539|consen  629 GDFLATVHV-------DQNGIYLWSNK  648 (910)
T ss_pred             CCEEEEEEe-------cCceEEEEEch
Confidence            999999987       44556788876

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.94  E-value=1.4e-24  Score=183.14  Aligned_cols=277  Identities=17%  Similarity=0.165  Sum_probs=207.3

Q ss_pred             eCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec
Q 009993          180 SKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW  255 (520)
Q Consensus       180 ~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~  255 (520)
                      +++|..+++.+.  .+|.+|++++.|.+..||-..+|+             .+-++.||++.|.|+..  +.+.+++|+.
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-------------rlGty~GHtGavW~~Did~~s~~liTGSA   72 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-------------RLGTYDGHTGAVWCCDIDWDSKHLITGSA   72 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-------------eeeeecCCCceEEEEEecCCcceeeeccc
Confidence            578988888876  789999999999999999875553             66788999999999998  6689999999


Q ss_pred             CCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEcC------CeEEEEECC-------CCeeeEEeecccccceE
Q 009993          256 DMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTSG------SDVYIWDTN-------SGCLLTVVNGAHVGNTK  320 (520)
Q Consensus       256 dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~d------~~i~iwd~~-------~~~~~~~~~~~~~~~i~  320 (520)
                      |.++++||+++|+++..+..+.+|..+.  +++++++.+.|      +.|.++|++       ..++...+. .+...++
T Consensus        73 D~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-t~~skit  151 (327)
T KOG0643|consen   73 DQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-TPDSKIT  151 (327)
T ss_pred             cceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-CCcccee
Confidence            9999999999999999999888888877  78888887764      459999998       445566666 3778999


Q ss_pred             EEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccC
Q 009993          321 SLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSG  398 (520)
Q Consensus       321 ~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~  398 (520)
                      .+-|.|-+++|++|.+||.|.+||++++.     ..+..-..|...|+.+.+++  .++++++.|.+-++||+.+.....
T Consensus       152 ~a~Wg~l~~~ii~Ghe~G~is~~da~~g~-----~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~K  226 (327)
T KOG0643|consen  152 SALWGPLGETIIAGHEDGSISIYDARTGK-----ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLK  226 (327)
T ss_pred             eeeecccCCEEEEecCCCcEEEEEcccCc-----eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEE
Confidence            99999999999999999999999999984     45666678999999999976  699999999999999999863332


Q ss_pred             CCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCe--EEEEeCCchHhHHHHhhh--hcccccchhhhh
Q 009993          399 RPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGI--VRIWNFSQAFEIERRARA--LRGIRLENRMRR  474 (520)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~--v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~  474 (520)
                      ...                  ........++.|..+.++.||.-..  |--=+.+.++.-.+....  .+.+...+.+--
T Consensus       227 ty~------------------te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG  288 (327)
T KOG0643|consen  227 TYT------------------TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG  288 (327)
T ss_pred             Eee------------------ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc
Confidence            111                  1112233344454455555553222  222222233222222111  112222334445


Q ss_pred             ccceeeeccCCCccccccc
Q 009993          475 RKLQTEMSSKGGRTDQCSV  493 (520)
Q Consensus       475 ~~~~~~~s~~g~~~~~~s~  493 (520)
                      ....++|+|||+..++..-
T Consensus       289 PINsvAfhPdGksYsSGGE  307 (327)
T KOG0643|consen  289 PINSVAFHPDGKSYSSGGE  307 (327)
T ss_pred             CcceeEECCCCcccccCCC
Confidence            5789999999998877653

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=1.6e-25  Score=188.07  Aligned_cols=267  Identities=13%  Similarity=0.176  Sum_probs=215.8

Q ss_pred             EEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEE
Q 009993          178 ASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYS  252 (520)
Q Consensus       178 ~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s  252 (520)
                      +.+++|...+.++.  .+|..|++|+.|+++.+|++....           ........+|.+.|-.++|   +++.+++
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r-----------~~~~~~~~gh~~svdql~w~~~~~d~~at   82 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR-----------FRKELVYRGHTDSVDQLCWDPKHPDLFAT   82 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchh-----------hhhhhcccCCCcchhhheeCCCCCcceEE
Confidence            34556766676665  889999999999999999986542           2234456789999999999   5688999


Q ss_pred             EecCCeEEEEECCCCcEEEEee--eccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCC
Q 009993          253 GSWDMTVRVWDRALLKCLKVLR--HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD  329 (520)
Q Consensus       253 ~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~  329 (520)
                      ++.|.+|++||++++++...+.  ...-..+.+|+|.++++++ |..|.+.|.++.+.+....  ....+..++|+.+++
T Consensus        83 as~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~--~~~e~ne~~w~~~nd  160 (313)
T KOG1407|consen   83 ASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ--FKFEVNEISWNNSND  160 (313)
T ss_pred             ecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc--ccceeeeeeecCCCC
Confidence            9999999999999999999887  3333445569999999999 9999999999988877664  566788899998888


Q ss_pred             EEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCcee
Q 009993          330 FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVS  407 (520)
Q Consensus       330 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  407 (520)
                      +++.....|+|.|.....-      +++.++..|.....||.|+|  +++++|+.|-.+.+||+...             
T Consensus       161 ~Fflt~GlG~v~ILsypsL------kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-------------  221 (313)
T KOG1407|consen  161 LFFLTNGLGCVEILSYPSL------KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL-------------  221 (313)
T ss_pred             EEEEecCCceEEEEecccc------ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh-------------
Confidence            8888878899999998866      88999999999999999987  79999999999999999873             


Q ss_pred             eeeecCCCcccccCcceeeEEEEe--cCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCC
Q 009993          408 RVIEVEPPQRMLHGFECNLLSVDI--GADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKG  485 (520)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g  485 (520)
                            .+.+.+..+.-+|..++|  ++++||+|++|..|-|=++++|..+.+....           .....++|+|+-
T Consensus       222 ------iC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~-----------~~t~tVAWHPk~  284 (313)
T KOG1407|consen  222 ------ICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE-----------GPTFTVAWHPKR  284 (313)
T ss_pred             ------hhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeecc-----------CCceeEEecCCC
Confidence                  344555556655655555  5669999999999999999999876553222           224688999988


Q ss_pred             Cccccccc
Q 009993          486 GRTDQCSV  493 (520)
Q Consensus       486 ~~~~~~s~  493 (520)
                      ..||-+.-
T Consensus       285 ~LLAyA~d  292 (313)
T KOG1407|consen  285 PLLAYACD  292 (313)
T ss_pred             ceeeEEec
Confidence            87776543

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=5.3e-24  Score=210.14  Aligned_cols=224  Identities=16%  Similarity=0.170  Sum_probs=172.9

Q ss_pred             EeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cC-CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccC
Q 009993          160 SGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--AD-KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH  236 (520)
Q Consensus       160 gs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h  236 (520)
                      |+.++.|++|+......+..+.+|...|.++.  |+ +.+|++|+.||+|++||+.++.....     ........+.+|
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-----~i~~p~~~L~gH  124 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-----EIKDPQCILKGH  124 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-----ccccceEEeecC
Confidence            66789999999988888889999999998876  54 78999999999999999976421100     001234467899


Q ss_pred             CCCeEEEEEcC--C-EEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEE
Q 009993          237 EGPITSLALDL--T-RIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTV  310 (520)
Q Consensus       237 ~~~v~~l~~~~--~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~  310 (520)
                      ...|.+++|++  . .+++++.|++|++||+++++.+..+.+...|.+++  ++|.+|++++ |+.|+|||+++++.+..
T Consensus       125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t  204 (568)
T PTZ00420        125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS  204 (568)
T ss_pred             CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE
Confidence            99999999944  4 46799999999999999998888777778898887  7899999888 99999999999999888


Q ss_pred             eecccccceEE-----EEecCCCCEEEEEeCCC----eEEEEEcccCccccceeeeeee--cCCcCCEEEEEec--CCEE
Q 009993          311 VNGAHVGNTKS-----LARSHTGDFLFTGGEDG----AIHMYEIINDCTEANVLLVATW--IPHTGPVNSLAFE--FPWL  377 (520)
Q Consensus       311 ~~~~~~~~i~~-----l~~s~~~~~l~tg~~dg----~i~iwd~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~--~~~l  377 (520)
                      +. +|.+.+.+     ..|++++.+|++++.|+    .|+|||++...     .++...  ..+.+.+......  +.++
T Consensus       205 l~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~-----~pl~~~~ld~~~~~L~p~~D~~tg~l~  278 (568)
T PTZ00420        205 FH-IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT-----SALVTMSIDNASAPLIPHYDESTGLIY  278 (568)
T ss_pred             Ee-cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC-----CceEEEEecCCccceEEeeeCCCCCEE
Confidence            86 68775433     33568889999988774    79999999642     233333  3333333333222  3588


Q ss_pred             EEEeCCCcEEEEeCCcc
Q 009993          378 VSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       378 ~s~s~dg~i~vwd~~~~  394 (520)
                      ++|+.|+.|++|++...
T Consensus       279 lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        279 LIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             EEEECCCeEEEEEccCC
Confidence            99999999999999764

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.5e-25  Score=186.52  Aligned_cols=248  Identities=17%  Similarity=0.186  Sum_probs=192.5

Q ss_pred             hhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC---cEEEEeCCCCceEEEEe----cCCCEEEEEeCCCcEEEE
Q 009993          137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG---FSIASSKPLGCTIRAVA----ADKKLLVAGGTDGFIHCW  209 (520)
Q Consensus       137 ~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~----~~~~~l~sg~~dg~i~vw  209 (520)
                      +-.+|.+.|..+.....|+.|+|++.|++|+|+.+.++   ..+.++.+|..+|..+.    .-|.+|++++.||.|.||
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence            34689999999988888999999999999999999765   46788999999999877    368999999999999999


Q ss_pred             EcccCcceeeeccCCccccceEEeccCCCCeEEEEE----cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEeeC
Q 009993          210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPH  285 (520)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~  285 (520)
                      .-.++.           .........|...|++++|    -|-.|++++.||.|.+.+.++..                 
T Consensus        86 ke~~g~-----------w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g-----------------  137 (299)
T KOG1332|consen   86 KEENGR-----------WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG-----------------  137 (299)
T ss_pred             ecCCCc-----------hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC-----------------
Confidence            976653           3455566789999999999    33568999999999998876420                 


Q ss_pred             CCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCC---C-----------CEEEEEeCCCeEEEEEcccCccc
Q 009993          286 DTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT---G-----------DFLFTGGEDGAIHMYEIINDCTE  351 (520)
Q Consensus       286 ~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~---~-----------~~l~tg~~dg~i~iwd~~~~~~~  351 (520)
                                         +-....+...|.-.|++++|.|.   |           +.|++|+.|..|+||+...+.  
T Consensus       138 -------------------~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~--  196 (299)
T KOG1332|consen  138 -------------------GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS--  196 (299)
T ss_pred             -------------------CccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc--
Confidence                               11111222357778888888774   3           569999999999999998862  


Q ss_pred             cceeeeeeecCCcCCEEEEEecC------CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCccee
Q 009993          352 ANVLLVATWIPHTGPVNSLAFEF------PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN  425 (520)
Q Consensus       352 ~~~~~~~~~~~h~~~v~~l~~~~------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (520)
                        ...-.++.+|.+.|+.++|.|      .+|++++.||+|.||..+......                ....++.....
T Consensus       197 --w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w----------------k~tll~~f~~~  258 (299)
T KOG1332|consen  197 --WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW----------------KKTLLEEFPDV  258 (299)
T ss_pred             --hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc----------------cccccccCCcc
Confidence              244556899999999999977      489999999999999887432111                11223334444


Q ss_pred             eEE--EEecCCEEEEecCCCeEEEEeCC
Q 009993          426 LLS--VDIGADRIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       426 v~~--~~~~~~~l~sg~~Dg~v~iwd~~  451 (520)
                      ++.  +++.++.|+.++.|..|.+|.-.
T Consensus       259 ~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  259 VWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             eEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            554  44567799999999999999754

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=9.3e-25  Score=197.57  Aligned_cols=256  Identities=19%  Similarity=0.260  Sum_probs=194.2

Q ss_pred             CCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecC
Q 009993          183 LGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWD  256 (520)
Q Consensus       183 ~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~d  256 (520)
                      |...|....   .+...+++++..+.|.|||..+.....-   ......+..++.+|...-.+++|   ....+++++.|
T Consensus       123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~---~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK---ASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc---ccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence            444444333   5667888899999999999865421110   00123456688899998888999   44789999999


Q ss_pred             CeEEEEECCCCcE-------EEEee-eccCEEEEe---eCCCEEEEEc-CCeEEEEECCC--CeeeEEeecccccceEEE
Q 009993          257 MTVRVWDRALLKC-------LKVLR-HSDWVYGLA---PHDTTVASTS-GSDVYIWDTNS--GCLLTVVNGAHVGNTKSL  322 (520)
Q Consensus       257 g~v~iwd~~~~~~-------~~~~~-~~~~v~~~~---~~~~~l~~~~-d~~i~iwd~~~--~~~~~~~~~~~~~~i~~l  322 (520)
                      ++|.+||+.....       ...+. |.+.|..++   .+..++++++ |+.+.|||+++  .++..... +|.+.++|+
T Consensus       200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~-ah~~~vn~~  278 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK-AHSAEVNCV  278 (422)
T ss_pred             CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc-ccCCceeEE
Confidence            9999999975432       22233 888898888   5667777777 89999999995  44444444 799999999


Q ss_pred             EecC-CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccccC
Q 009993          323 ARSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSG  398 (520)
Q Consensus       323 ~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~  398 (520)
                      +|+| ++..||||+.|++|.+||+|+..     .++.++.+|...|.+|.|+|   ..|++++.|+.+.|||+..-....
T Consensus       279 ~fnp~~~~ilAT~S~D~tV~LwDlRnL~-----~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq  353 (422)
T KOG0264|consen  279 AFNPFNEFILATGSADKTVALWDLRNLN-----KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ  353 (422)
T ss_pred             EeCCCCCceEEeccCCCcEEEeechhcc-----cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence            9999 55678899999999999999986     57899999999999999998   599999999999999998643332


Q ss_pred             CCCCCCceeeeeecCCCcccccCcceeeEEEEecCC---EEEEecCCCeEEEEeCCc
Q 009993          399 RPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD---RIVCGGEEGIVRIWNFSQ  452 (520)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~sg~~Dg~v~iwd~~~  452 (520)
                      .......     ....+..+-.||...|..++|++.   .|++.++|+.+.||+...
T Consensus       354 ~~eda~d-----gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  354 SPEDAED-----GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             Chhhhcc-----CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            2111110     112223445689999999999887   899999999999999873

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.2e-25  Score=197.28  Aligned_cols=277  Identities=18%  Similarity=0.259  Sum_probs=218.1

Q ss_pred             EEeCCCCceEEEEe--cCC-CEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEe
Q 009993          178 ASSKPLGCTIRAVA--ADK-KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS  254 (520)
Q Consensus       178 ~~~~~~~~~v~~~~--~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s  254 (520)
                      ..+.+|...|.+++  |.. ..+++|+.||.|++||+.+.             .+...+..|.+.|..|+++...+++++
T Consensus        60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR-------------~~~~~f~AH~G~V~Gi~v~~~~~~tvg  126 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR-------------ECIRTFKAHEGLVRGICVTQTSFFTVG  126 (433)
T ss_pred             hhccccccccchhhcCcchhhhhhccccCceEEEEehhhh-------------hhhheeecccCceeeEEecccceEEec
Confidence            34567888888887  433 56899999999999998663             467788999999999999889999999


Q ss_pred             cCCeEEEEECCCCcEEEEeeeccCEEEEee-CCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCC-CEEE
Q 009993          255 WDMTVRVWDRALLKCLKVLRHSDWVYGLAP-HDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG-DFLF  332 (520)
Q Consensus       255 ~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~  332 (520)
                      .|.+|+.|-+.. ..++++-....+..++. ...-+++.++..|.|||.....++..+.. ....|.++.|+|.. ..|+
T Consensus       127 dDKtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smsw-G~Dti~svkfNpvETsILa  204 (433)
T KOG0268|consen  127 DDKTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSW-GADSISSVKFNPVETSILA  204 (433)
T ss_pred             CCcceeeeeccC-CcceeeeccccccccccccccccccccCceeeecccccCCccceeec-CCCceeEEecCCCcchhee
Confidence            999999999865 46677767777777873 33344445567899999999999988875 45678999999965 4677


Q ss_pred             EEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeee
Q 009993          333 TGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVI  410 (520)
Q Consensus       333 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  410 (520)
                      +|++|+.|.+||++...      ++....- ...-+.|+|+|  -.+++|+.|..++.+|++..                
T Consensus       205 s~~sDrsIvLyD~R~~~------Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l----------------  261 (433)
T KOG0268|consen  205 SCASDRSIVLYDLRQAS------PLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNL----------------  261 (433)
T ss_pred             eeccCCceEEEecccCC------ccceeee-eccccceecCccccceeeccccccceehhhhhh----------------
Confidence            78899999999999994      3333211 23457899998  47889999999999999986                


Q ss_pred             ecCCCcccccCcceeeEEEEecCC--EEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcc
Q 009993          411 EVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRT  488 (520)
Q Consensus       411 ~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~  488 (520)
                        ..+..+..+|...|+++++++.  -+++||.|.+||||.+..+..-..         ...+.-..+.++.||-|.+.+
T Consensus       262 --~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdi---------YhtkRMq~V~~Vk~S~Dskyi  330 (433)
T KOG0268|consen  262 --SRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI---------YHTKRMQHVFCVKYSMDSKYI  330 (433)
T ss_pred             --cccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhh---------hhHhhhheeeEEEEeccccEE
Confidence              6667778899999999998765  999999999999999987643222         222333468899999999999


Q ss_pred             cccccccccCCCCCCcceeeecc
Q 009993          489 DQCSVAAKKNPMNGNRRSVWHNK  511 (520)
Q Consensus       489 ~~~s~~~~~~~~~~~~~~~~~~~  511 (520)
                      .+.|-        -....+|..+
T Consensus       331 ~SGSd--------d~nvRlWka~  345 (433)
T KOG0268|consen  331 ISGSD--------DGNVRLWKAK  345 (433)
T ss_pred             EecCC--------Ccceeeeecc
Confidence            99884        3334678764

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=5.7e-25  Score=208.25  Aligned_cols=245  Identities=21%  Similarity=0.320  Sum_probs=203.9

Q ss_pred             CCCCCCcccHHHh------hhhhccccccEEE-EEEcc-CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe-c
Q 009993          122 GAGFSDDKSWKEL------IDVLYGHTEAVLT-VFVLA-SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-A  192 (520)
Q Consensus       122 ~~~~~~~~~W~~~------~~~l~~h~~~V~~-l~~~~-~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~-~  192 (520)
                      .+.+...++|++.      .+.+++|.+-|.+ +++.+ ++-.+++|+.|++|.+|.+....++..+.+|...|.+++ .
T Consensus        31 ~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~  110 (745)
T KOG0301|consen   31 GSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIG  110 (745)
T ss_pred             cCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecC
Confidence            3445556889853      4567888888888 88875 455699999999999999999999999999999999999 3


Q ss_pred             CCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEE
Q 009993          193 DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLK  271 (520)
Q Consensus       193 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~  271 (520)
                      ....+++||.|.++++|....               ....+.+|+..|.++.. ..+.++|||.|++|++|.-  +++++
T Consensus       111 ~~~~~iSgSWD~TakvW~~~~---------------l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~  173 (745)
T KOG0301|consen  111 EDGTLISGSWDSTAKVWRIGE---------------LVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLK  173 (745)
T ss_pred             CcCceEecccccceEEecchh---------------hhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--Cchhh
Confidence            334489999999999998643               34458899999999998 5569999999999999985  77888


Q ss_pred             Eee-eccCEEEEe-eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993          272 VLR-HSDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  348 (520)
Q Consensus       272 ~~~-~~~~v~~~~-~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~  348 (520)
                      ++. |.+.|..+. .++..+++++ ||.|++|++ +|+.+.++. +|..-++++...+++..++++++|++++||+..  
T Consensus       174 tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~-ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--  249 (745)
T KOG0301|consen  174 TFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMH-GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--  249 (745)
T ss_pred             hhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeee-ccceEEEEEEecCCCCeEEEecCCceEEEeecC--
Confidence            887 999999999 5555566666 999999999 777787776 799999999988889999999999999999976  


Q ss_pred             ccccceeeeeeecCCcCCEEEEEe-cCCEEEEEeCCCcEEEEeCCc
Q 009993          349 CTEANVLLVATWIPHTGPVNSLAF-EFPWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       349 ~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~vwd~~~  393 (520)
                            .+.+.+.-....|+++.+ ...-+++|+.||.|+||....
T Consensus       250 ------e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  250 ------ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             ------ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence                  245555445557888887 467899999999999998874

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=1.9e-24  Score=194.02  Aligned_cols=245  Identities=19%  Similarity=0.234  Sum_probs=208.2

Q ss_pred             HHhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEE
Q 009993          132 KELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCW  209 (520)
Q Consensus       132 ~~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vw  209 (520)
                      ++++.+|+||...|+.+.|+|+...+++++.|..|+||.............|..+|+.++  +.|.||++++.||+..+.
T Consensus       251 ~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fs  330 (506)
T KOG0289|consen  251 NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFS  330 (506)
T ss_pred             hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEE
Confidence            378999999999999999999999999999999999999998888888899999999887  999999999999999999


Q ss_pred             EcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--e
Q 009993          210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--P  284 (520)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~  284 (520)
                      |++++...           ....-....-.+++.+|  ||..+.+|..||.|+|||+.++..+..|. |.++|..++  .
T Consensus       331 d~~~g~~l-----------t~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE  399 (506)
T KOG0289|consen  331 DISSGSQL-----------TVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE  399 (506)
T ss_pred             EccCCcEE-----------EEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEecc
Confidence            99887421           11111122345888899  77889999999999999999998888887 999999988  7


Q ss_pred             CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCC
Q 009993          285 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH  363 (520)
Q Consensus       285 ~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h  363 (520)
                      +|.+++++. |+.|++||++..+...++.......+.++.|.+.|.+|+.++.|=.|++++-.+.    ++..+..+..|
T Consensus       400 NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k----~W~~~~~~~~~  475 (506)
T KOG0289|consen  400 NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTK----SWTEIKELADH  475 (506)
T ss_pred             CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccc----cceeeehhhhc
Confidence            888999998 7889999999998888887555568999999999999999988877777764433    23678888889


Q ss_pred             cCCEEEEEecC--CEEEEEeCCCcEEEEeC
Q 009993          364 TGPVNSLAFEF--PWLVSAAGDGKLSLIDV  391 (520)
Q Consensus       364 ~~~v~~l~~~~--~~l~s~s~dg~i~vwd~  391 (520)
                      .+..+++.|..  .+++++|.|..++++.+
T Consensus       476 sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  476 SGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ccccceeeecccceEEeeccchhheEEeec
Confidence            99999999954  79999999999888754

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=1.2e-23  Score=207.53  Aligned_cols=215  Identities=20%  Similarity=0.257  Sum_probs=161.6

Q ss_pred             EeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc---CCEEEEEecCCeEEEEECCCCc--------
Q 009993          200 GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGSWDMTVRVWDRALLK--------  268 (520)
Q Consensus       200 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~v~iwd~~~~~--------  268 (520)
                      |+.++.|++|+....             .....+.+|.+.|.+++|+   +++|++|+.||+|++||+.++.        
T Consensus        50 GG~~gvI~L~~~~r~-------------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~  116 (568)
T PTZ00420         50 GGLIGAIRLENQMRK-------------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKD  116 (568)
T ss_pred             CCceeEEEeeecCCC-------------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccccc
Confidence            455678899986432             2566788999999999994   5789999999999999998642        


Q ss_pred             EEEEee-eccCEEEEe--eCCCE-EEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993          269 CLKVLR-HSDWVYGLA--PHDTT-VASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY  343 (520)
Q Consensus       269 ~~~~~~-~~~~v~~~~--~~~~~-l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iw  343 (520)
                      .+..+. |...|.++.  |++.. +++++ |+.|++||+++++.+..+.  |...|.+++|+|+|.+|++++.|+.|+||
T Consensus       117 p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIw  194 (568)
T PTZ00420        117 PQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHII  194 (568)
T ss_pred             ceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEE
Confidence            223344 888999888  66655 46767 9999999999998877764  66789999999999999999999999999


Q ss_pred             EcccCccccceeeeeeecCCcCCEEEEE-----e--cCCEEEEEeCCC----cEEEEeCCcccccCCCCCCCceeeeeec
Q 009993          344 EIINDCTEANVLLVATWIPHTGPVNSLA-----F--EFPWLVSAAGDG----KLSLIDVRKLLRSGRPTSGKRVSRVIEV  412 (520)
Q Consensus       344 d~~~~~~~~~~~~~~~~~~h~~~v~~l~-----~--~~~~l~s~s~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~  412 (520)
                      |++++      ..+.++.+|.+.+.+..     |  +..+|++++.|+    .|+|||+++..                 
T Consensus       195 D~Rsg------~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~-----------------  251 (568)
T PTZ00420        195 DPRKQ------EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT-----------------  251 (568)
T ss_pred             ECCCC------cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC-----------------
Confidence            99998      66778889988654433     2  236888888764    79999998631                 


Q ss_pred             CCCccc--ccCcceeeE-EEEe-cCCEEEEecCCCeEEEEeCCch
Q 009993          413 EPPQRM--LHGFECNLL-SVDI-GADRIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       413 ~~~~~~--~~~~~~~v~-~~~~-~~~~l~sg~~Dg~v~iwd~~~~  453 (520)
                       .+...  +..+...+. .+++ ++.++++|+.|+.|++|++..+
T Consensus       252 -~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        252 -SALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             -CceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence             11111  122222221 2222 2458999999999999999765

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.8e-23  Score=180.66  Aligned_cols=298  Identities=17%  Similarity=0.171  Sum_probs=198.4

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcE-----EE-EeC-CCCceEEEEecCCCEE-EEEeCCCcE
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS-----IA-SSK-PLGCTIRAVAADKKLL-VAGGTDGFI  206 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~-----~~-~~~-~~~~~v~~~~~~~~~l-~sg~~dg~i  206 (520)
                      ..+|+||.+.|++++|+.||++|+|++.|++|++|++.....     ++ ..+ +| .....|+||-.-+ ++.....++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dh-pT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDH-PTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCC-ceEEEECCCcceEEEEEccCCEE
Confidence            678999999999999999999999999999999999976421     11 122 33 3444677776644 445556678


Q ss_pred             EEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee---eccCEEE
Q 009993          207 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYG  281 (520)
Q Consensus       207 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~  281 (520)
                      ++|.+....--.+.... .......--..|.-.|..+-.  ++.+|++++.|..|.+|+++ |+.+..+.   ....-..
T Consensus       158 ~vyk~~K~~dG~~~~~~-v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa  235 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHF-VHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA  235 (420)
T ss_pred             EEEEeeecccCCCCccc-ccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence            89876432210000000 000001112246666766666  56889999999999999998 88888876   4455566


Q ss_pred             EeeCCCEEEEEc-CCeEEEEECC---CC-----eeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccc-
Q 009993          282 LAPHDTTVASTS-GSDVYIWDTN---SG-----CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE-  351 (520)
Q Consensus       282 ~~~~~~~l~~~~-d~~i~iwd~~---~~-----~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~-  351 (520)
                      ++|+|+++++++ --.|++|.+-   .|     ..+..+. +|...|..++|+++...+++.+.||++++||.+-.-.. 
T Consensus       236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk-GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~  314 (420)
T KOG2096|consen  236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK-GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG  314 (420)
T ss_pred             eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec-cchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecC
Confidence            789999999998 8999999873   22     2234454 79999999999999999999999999999998543111 


Q ss_pred             cceeeeeee----cCCcCCEEEEEecCC-EEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceee
Q 009993          352 ANVLLVATW----IPHTGPVNSLAFEFP-WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL  426 (520)
Q Consensus       352 ~~~~~~~~~----~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  426 (520)
                      +.++.+.+.    ....+....+..+|+ .+++.+....++++..+++..                .+.....++.....
T Consensus       315 qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~----------------~~~~e~~h~~~Is~  378 (420)
T KOG2096|consen  315 QDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKD----------------YPELEDIHSTTISS  378 (420)
T ss_pred             CCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCcc----------------chhHHHhhcCceee
Confidence            111222222    122233346777772 444555566899999887521                22233334444555


Q ss_pred             EEEEecCCEEEEecCCCeEEEEeCCch
Q 009993          427 LSVDIGADRIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       427 ~~~~~~~~~l~sg~~Dg~v~iwd~~~~  453 (520)
                      .+++++|.+++|+| |..+++..-..+
T Consensus       379 is~~~~g~~~atcG-dr~vrv~~ntpg  404 (420)
T KOG2096|consen  379 ISYSSDGKYIATCG-DRYVRVIRNTPG  404 (420)
T ss_pred             EEecCCCcEEeeec-ceeeeeecCCCc
Confidence            55555667999988 577888874433

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.9e-24  Score=195.47  Aligned_cols=238  Identities=22%  Similarity=0.253  Sum_probs=194.5

Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcc
Q 009993          139 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLP  216 (520)
Q Consensus       139 ~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~  216 (520)
                      ++|.+.|.+++.++||++|++|+.|..|.||+.++.+.+..+.+|...|.++.  ...+.+++++.|+.|++|++...  
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~--  276 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL--  276 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh--
Confidence            48999999999999999999999999999999999999999999999999887  55668999999999999998653  


Q ss_pred             eeeeccCCccccceEEeccCCCCeEEEEE-cCCEE-EEEecCCeEEEEECCCCcEEEEeeeccCEEEEe-eCCCEEEEEc
Q 009993          217 HLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRI-YSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA-PHDTTVASTS  293 (520)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~  293 (520)
                                 ..+.++.+|.+.|.+|.. +-..+ -+|+.|+++++|++.....+....+.+.+-|++ .+...+++|+
T Consensus       277 -----------s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGS  345 (479)
T KOG0299|consen  277 -----------SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGS  345 (479)
T ss_pred             -----------HHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeecc
Confidence                       456678899999999998 44444 455599999999995544444445888899998 7888999999


Q ss_pred             -CCeEEEEECCCCeeeEEeecccc-----------cceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec
Q 009993          294 -GSDVYIWDTNSGCLLTVVNGAHV-----------GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI  361 (520)
Q Consensus       294 -d~~i~iwd~~~~~~~~~~~~~~~-----------~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~  361 (520)
                       +|.|.+|++-+.+++.....+|.           ..|++++..|..+++++|+.+|.|++|-+..+..  .+.++..+.
T Consensus       346 dnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r--~i~~l~~ls  423 (479)
T KOG0299|consen  346 DNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR--AINLLYSLS  423 (479)
T ss_pred             CCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc--ccceeeecc
Confidence             89999999999999888765552           2789999999999999999999999999988843  223444443


Q ss_pred             CCcCCEEEEEec--CCEEEEE-eCCCcEEEEeCC
Q 009993          362 PHTGPVNSLAFE--FPWLVSA-AGDGKLSLIDVR  392 (520)
Q Consensus       362 ~h~~~v~~l~~~--~~~l~s~-s~dg~i~vwd~~  392 (520)
                       -.+.|++++|+  +..+++| +....+--|-..
T Consensus       424 -~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~  456 (479)
T KOG0299|consen  424 -LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL  456 (479)
T ss_pred             -cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence             56789999985  4544444 556666555544

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.7e-25  Score=212.00  Aligned_cols=285  Identities=18%  Similarity=0.220  Sum_probs=214.0

Q ss_pred             hhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc----EEEEeCCCCceEE---EE---ecCCCEEEEEeCCCcE
Q 009993          137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF----SIASSKPLGCTIR---AV---AADKKLLVAGGTDGFI  206 (520)
Q Consensus       137 ~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~----~~~~~~~~~~~v~---~~---~~~~~~l~sg~~dg~i  206 (520)
                      .++++.   .++..+++-..++.++. ..++|+.+....    +...+......-.   .+   ....++|+|++..|.|
T Consensus        37 ~~k~~~---nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i  112 (839)
T KOG0269|consen   37 KLKAKA---NAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVI  112 (839)
T ss_pred             eccccc---ceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcE
Confidence            345554   45556788777877764 457787765431    1122222111111   11   2567899999999999


Q ss_pred             EEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEE
Q 009993          207 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGL  282 (520)
Q Consensus       207 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~  282 (520)
                      .+||+...          ........+..|+..+.++.|   .+++|++||.||+|++||++..+...++. ....|..+
T Consensus       113 ~vWdlnk~----------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV  182 (839)
T KOG0269|consen  113 SVWDLNKS----------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDV  182 (839)
T ss_pred             EEEecCcc----------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhce
Confidence            99998652          113345567889999999999   67999999999999999999888877776 56677777


Q ss_pred             e---eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeee
Q 009993          283 A---PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA  358 (520)
Q Consensus       283 ~---~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~  358 (520)
                      .   ..+..++++. .|.+.+||++....-.....+|.++|.++.|+|++.+||||+.|+.|+|||+.+...    .+..
T Consensus       183 ~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~----~~~~  258 (839)
T KOG0269|consen  183 KFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA----KPKH  258 (839)
T ss_pred             eeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc----ccee
Confidence            6   4577888888 699999999986543333348999999999999999999999999999999987643    2333


Q ss_pred             eecCCcCCEEEEEecC---CEEEEEeC--CCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC
Q 009993          359 TWIPHTGPVNSLAFEF---PWLVSAAG--DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA  433 (520)
Q Consensus       359 ~~~~h~~~v~~l~~~~---~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  433 (520)
                      ++ ....+|.++.|-|   .+|++++.  |-.|+|||++.+                  .-+..++..|...+..+.|.+
T Consensus       259 tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP------------------YIP~~t~~eH~~~vt~i~W~~  319 (839)
T KOG0269|consen  259 TI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP------------------YIPYATFLEHTDSVTGIAWDS  319 (839)
T ss_pred             EE-eecceeeeeeeccCccchhhhhhccccceEEEEeeccc------------------cccceeeeccCccccceeccC
Confidence            33 2356899999976   57888764  789999999976                  556677888999999999876


Q ss_pred             C---EEEEecCCCeEEEEeCCchHhHHH
Q 009993          434 D---RIVCGGEEGIVRIWNFSQAFEIER  458 (520)
Q Consensus       434 ~---~l~sg~~Dg~v~iwd~~~~~~~~~  458 (520)
                      .   .+.+++.||+|..-.++++.....
T Consensus       320 ~d~~~l~s~sKD~tv~qh~~knat~pid  347 (839)
T KOG0269|consen  320 GDRINLWSCSKDGTVLQHLFKNATTPID  347 (839)
T ss_pred             CCceeeEeecCccHHHHhhhhcccChhh
Confidence            3   899999999998877777655444

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.93  E-value=2.8e-24  Score=194.51  Aligned_cols=248  Identities=17%  Similarity=0.152  Sum_probs=196.0

Q ss_pred             ccccccEEEEEEccCC-CEEEEEeCCCeEEEEECCCCcE----------EEEeCCCCceEEEEe---cCCCEEEEEeCCC
Q 009993          139 YGHTEAVLTVFVLASA-KLLFTSGYDSIVRMWHLEDGFS----------IASSKPLGCTIRAVA---ADKKLLVAGGTDG  204 (520)
Q Consensus       139 ~~h~~~V~~l~~~~~~-~~l~sgs~dg~v~vwd~~~~~~----------~~~~~~~~~~v~~~~---~~~~~l~sg~~dg  204 (520)
                      --|.+.|..+.+.|.. .++++++..+.|.|||..+...          -..+.+|...-..++   .....|++|+.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            4689999999999965 5677788899999999864321          125667766444444   3455899999999


Q ss_pred             cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCC--CcEEEEee-eccC
Q 009993          205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRAL--LKCLKVLR-HSDW  278 (520)
Q Consensus       205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~--~~~~~~~~-~~~~  278 (520)
                      +|.+||+......      .........+.+|...|..++|   +.+.+.+++.|+.+.|||+++  .+..+... |...
T Consensus       201 ~i~lwdi~~~~~~------~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~  274 (422)
T KOG0264|consen  201 TICLWDINAESKE------DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAE  274 (422)
T ss_pred             cEEEEeccccccC------CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCc
Confidence            9999999765311      1224466778899999999999   668899999999999999995  34444443 8999


Q ss_pred             EEEEe---eCCCEEEEEc-CCeEEEEECCCCe-eeEEeecccccceEEEEecCCC-CEEEEEeCCCeEEEEEcccCccc-
Q 009993          279 VYGLA---PHDTTVASTS-GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTE-  351 (520)
Q Consensus       279 v~~~~---~~~~~l~~~~-d~~i~iwd~~~~~-~~~~~~~~~~~~i~~l~~s~~~-~~l~tg~~dg~i~iwd~~~~~~~-  351 (520)
                      |+|++   .++..||+|+ |++|.+||+++.. ++..+. +|...|.++.|+|.. ..|++++.|+.+.|||+..-... 
T Consensus       275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e-~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq  353 (422)
T KOG0264|consen  275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE-GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ  353 (422)
T ss_pred             eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc-CCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence            99998   4677888888 9999999999864 556665 799999999999965 57889999999999999654322 


Q ss_pred             -------cceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCc
Q 009993          352 -------ANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       352 -------~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~  393 (520)
                             ..+.++....||...|..+.|+|   -.+++.+.|+.+.||.+..
T Consensus       354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence                   23355677789999999999987   4899999999999999874

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3.7e-24  Score=194.04  Aligned_cols=241  Identities=19%  Similarity=0.300  Sum_probs=200.2

Q ss_pred             cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceee
Q 009993          142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLF  219 (520)
Q Consensus       142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~  219 (520)
                      .++|.|++-+|+|.+|+.|+..|.+++|.+.+|..+..+.+|-..|+++.  .|+.+|+||+.||.|.+|.+.+-    +
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l----v  156 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL----V  156 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEee----c
Confidence            57899999999999999999999999999999999999999988888876  78999999999999999997542    2


Q ss_pred             eccCCccccceEEeccCCCCeEEEEE-cC---CEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc
Q 009993          220 DISGSEKQNTQFRLWEHEGPITSLAL-DL---TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS  293 (520)
Q Consensus       220 ~~~~~~~~~~~~~~~~h~~~v~~l~~-~~---~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~  293 (520)
                      +........+...+..|+-+|+++.. .|   .+++|+|.|.++++||+..+..+.++..+..+.++.  |.++.+++|+
T Consensus       157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt  236 (476)
T KOG0646|consen  157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT  236 (476)
T ss_pred             ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecC
Confidence            22222345678889999999999999 33   689999999999999999999999999999998877  8889999999


Q ss_pred             -CCeEEEEECCCCe----------------eeEEeeccccc--ceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccce
Q 009993          294 -GSDVYIWDTNSGC----------------LLTVVNGAHVG--NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV  354 (520)
Q Consensus       294 -d~~i~iwd~~~~~----------------~~~~~~~~~~~--~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~  354 (520)
                       +|.|.+.++....                .+..+. +|.+  +|+|++++-||..|++|+.||.+.|||+...      
T Consensus       237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~-Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~------  309 (476)
T KOG0646|consen  237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV-GHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK------  309 (476)
T ss_pred             CcceEEeeehhcCCcccccccccccccccceeeeec-cccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH------
Confidence             9999998875432                223333 6777  9999999999999999999999999999988      


Q ss_pred             eeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCc
Q 009993          355 LLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       355 ~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~  393 (520)
                      .+++++....++|+.+.+.|   ..+..-...-.+-.|++..
T Consensus       310 Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lkr  351 (476)
T KOG0646|consen  310 QCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLKR  351 (476)
T ss_pred             HHHHHHhhhccccceeEeeccccceecccccCccCCchHhhc
Confidence            67777776788999999955   4444444445566666554

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=5e-24  Score=194.51  Aligned_cols=272  Identities=20%  Similarity=0.276  Sum_probs=210.7

Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC---cEEEEeC--CCCceEEE--EecCCCEEEEEeCCCcEEEEEcc
Q 009993          140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG---FSIASSK--PLGCTIRA--VAADKKLLVAGGTDGFIHCWRAV  212 (520)
Q Consensus       140 ~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~---~~~~~~~--~~~~~v~~--~~~~~~~l~sg~~dg~i~vwd~~  212 (520)
                      .|..-|.++.++...++++||+. |.|+|||+...   ..+..+.  .....+.+  +.+||+.|++|+.-.++.|||+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            68999999999999999999985 66999999643   2333332  22344444  34999999999999999999997


Q ss_pred             cCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCC
Q 009993          213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDT  287 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~  287 (520)
                      ...+.+           ...+..-.-...+++.  |.+..+++..||.|.|||+.+...++.+. |.+.+.|+.  .+|.
T Consensus       496 apTpri-----------kaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGt  564 (705)
T KOG0639|consen  496 APTPRI-----------KAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGT  564 (705)
T ss_pred             CCCcch-----------hhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCc
Confidence            654221           1122222233444455  77889999999999999999999999998 888888887  7899


Q ss_pred             EEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCC
Q 009993          288 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP  366 (520)
Q Consensus       288 ~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  366 (520)
                      .|.+|+ |++|+.||++++..+....  ..+.|.++.++|++.+|++|-+++.+-|-.....       ....+.-|.+.
T Consensus       565 klWTGGlDntvRcWDlregrqlqqhd--F~SQIfSLg~cP~~dWlavGMens~vevlh~skp-------~kyqlhlheSc  635 (705)
T KOG0639|consen  565 KLWTGGLDNTVRCWDLREGRQLQQHD--FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-------EKYQLHLHESC  635 (705)
T ss_pred             eeecCCCccceeehhhhhhhhhhhhh--hhhhheecccCCCccceeeecccCcEEEEecCCc-------cceeecccccE
Confidence            999999 9999999999998877653  6789999999999999999999999988877655       34556679999


Q ss_pred             EEEEEec--CCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCe
Q 009993          367 VNSLAFE--FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGI  444 (520)
Q Consensus       367 v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~  444 (520)
                      |.++.|.  ++++++.+.|+.+..|...-+...+.                  ...........++++.++||||+.|..
T Consensus       636 VLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFq------------------skE~SsVlsCDIS~ddkyIVTGSGdkk  697 (705)
T KOG0639|consen  636 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ------------------SKESSSVLSCDISFDDKYIVTGSGDKK  697 (705)
T ss_pred             EEEEEecccCceeeecCchhhhhhccCccccceee------------------ccccCcceeeeeccCceEEEecCCCcc
Confidence            9999996  58999999999999998876533221                  111122233445566779999999999


Q ss_pred             EEEEeC
Q 009993          445 VRIWNF  450 (520)
Q Consensus       445 v~iwd~  450 (520)
                      ..||.+
T Consensus       698 ATVYeV  703 (705)
T KOG0639|consen  698 ATVYEV  703 (705)
T ss_pred             eEEEEE
Confidence            888876

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=6.3e-23  Score=176.59  Aligned_cols=247  Identities=16%  Similarity=0.211  Sum_probs=190.2

Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC----cEEEEeCCCCceEEEEe----cCCCEEEEEeCCCcEEEEE
Q 009993          139 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG----FSIASSKPLGCTIRAVA----ADKKLLVAGGTDGFIHCWR  210 (520)
Q Consensus       139 ~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~----~~~~~~~~~~~~v~~~~----~~~~~l~sg~~dg~i~vwd  210 (520)
                      .+|.+-|.|+.|.+.|+.+|||+.|++|+|||....    .+....+.|.+.|..+.    .-|+.+|+++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            589999999999999999999999999999996433    45667789999998886    4588999999999999997


Q ss_pred             cccCcceeeeccC-CccccceEEeccCCCCeEEEEEc----CCEEEEEecCCeEEEEECCCCc------EEEEee-----
Q 009993          211 AVEVLPHLFDISG-SEKQNTQFRLWEHEGPITSLALD----LTRIYSGSWDMTVRVWDRALLK------CLKVLR-----  274 (520)
Q Consensus       211 ~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~v~iwd~~~~~------~~~~~~-----  274 (520)
                      -....     ... ........++....+.|+++.|.    |-.+++++.||++|||+.-..-      ....+.     
T Consensus        90 E~~~~-----~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p  164 (361)
T KOG2445|consen   90 EQEKS-----EEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP  164 (361)
T ss_pred             ecccc-----cccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCC
Confidence            42110     111 12344566777888999999994    4569999999999999865432      222222     


Q ss_pred             ---eccCEEEEe-----eCCCEEEEEcCC------eEEEEECCCCe----eeEEeecccccceEEEEecCCC----CEEE
Q 009993          275 ---HSDWVYGLA-----PHDTTVASTSGS------DVYIWDTNSGC----LLTVVNGAHVGNTKSLARSHTG----DFLF  332 (520)
Q Consensus       275 ---~~~~v~~~~-----~~~~~l~~~~d~------~i~iwd~~~~~----~~~~~~~~~~~~i~~l~~s~~~----~~l~  332 (520)
                         +..+..|++     ....+|++|++.      .++||....+.    .+.++. +|..+|+.++|.|+-    ..||
T Consensus       165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~~lA  243 (361)
T KOG2445|consen  165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSYHLLA  243 (361)
T ss_pred             cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCceeeEE
Confidence               344555665     456789999865      78999765542    344555 699999999999953    4799


Q ss_pred             EEeCCCeEEEEEcccCc--------------cccceeeeeeecCCcCCEEEEEec--CCEEEEEeCCCcEEEEeCC
Q 009993          333 TGGEDGAIHMYEIINDC--------------TEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       333 tg~~dg~i~iwd~~~~~--------------~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~  392 (520)
                      +++.|| |+||.+....              ...++..+..+.+|.+.|..+.|+  +..|.+.|.||.|++|...
T Consensus       244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            999999 9999997421              112345677788999999999996  6899999999999999865

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=3.9e-24  Score=202.92  Aligned_cols=236  Identities=18%  Similarity=0.236  Sum_probs=199.7

Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEec-----CCCEEEEEeCCCcEEEEEcccC
Q 009993          140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAA-----DKKLLVAGGTDGFIHCWRAVEV  214 (520)
Q Consensus       140 ~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~-----~~~~l~sg~~dg~i~vwd~~~~  214 (520)
                      +-.-.|.+++.+|+|++||+|..-|+++||++..-+....+..|...|.|+..     ..++|++++.|..|+|+|+...
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn  536 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN  536 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence            44568999999999999999999999999999999999999999999999982     3568999999999999998654


Q ss_pred             cceeeeccCCccccceEEeccCCCCeEEEEE--cC--CEEEEEecCCeEEEEECCCCcEEEEee------eccCEEEEe-
Q 009993          215 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DL--TRIYSGSWDMTVRVWDRALLKCLKVLR------HSDWVYGLA-  283 (520)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~------~~~~v~~~~-  283 (520)
                                  .....++.+|...|+++.|  ++  ..+++++.|+.|.+--.+.......+.      ....++.+. 
T Consensus       537 ------------y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~V  604 (1080)
T KOG1408|consen  537 ------------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAV  604 (1080)
T ss_pred             ------------cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeee
Confidence                        4567788999999999999  44  569999999887554332111111111      234556665 


Q ss_pred             -eCCCEEEEEc-CCeEEEEECCCCeeeEEeec--ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeee
Q 009993          284 -PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG--AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT  359 (520)
Q Consensus       284 -~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~--~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~  359 (520)
                       |..+++++++ |..|+|||+.+++..+.|+.  +|.+....+...|.|.|+++.+.|.++.++|+.++      .++.+
T Consensus       605 dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg------EcvA~  678 (1080)
T KOG1408|consen  605 DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG------ECVAQ  678 (1080)
T ss_pred             CCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc------hhhhh
Confidence             8888999988 99999999999999999985  45677888999999999999999999999999999      89999


Q ss_pred             ecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993          360 WIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       360 ~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  393 (520)
                      +.||...|+.+.|.+  ++|++.+.||.|.||.+..
T Consensus       679 m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  679 MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             hcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            999999999999966  7999999999999999864

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.92  E-value=2.6e-24  Score=185.12  Aligned_cols=245  Identities=16%  Similarity=0.251  Sum_probs=193.8

Q ss_pred             HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC----CCCceEEEEecCCCEEEEEeCCCcEEE
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK----PLGCTIRAVAADKKLLVAGGTDGFIHC  208 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~l~sg~~dg~i~v  208 (520)
                      .++++|..|.+.|+++.|+|....|++|+.|++|++||+......+.++    .+.....++.|.|.+|+.|..-.++++
T Consensus       163 PvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rl  242 (430)
T KOG0640|consen  163 PVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRL  242 (430)
T ss_pred             ceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeE
Confidence            4589999999999999999999999999999999999997654333222    233334445599999999999999999


Q ss_pred             EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--ec-cCEEEEe
Q 009993          209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HS-DWVYGLA  283 (520)
Q Consensus       209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~-~~v~~~~  283 (520)
                      ||+.+....+-          ...-.+|++.|+++.+  .++..++|+.||.|++||--+++|+.++.  |. ..|.+..
T Consensus       243 Ydv~T~Qcfvs----------anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~  312 (430)
T KOG0640|consen  243 YDVNTYQCFVS----------ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAV  312 (430)
T ss_pred             EeccceeEeee----------cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEE
Confidence            99988643221          1122469999999999  67899999999999999999999999997  54 4555554


Q ss_pred             --eCCCEEEEEc-CCeEEEEECCCCeeeEEeeccc----ccceEEEEecCCCCEEEEEeC-CCeEEEEEcccCcccccee
Q 009993          284 --PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAH----VGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDCTEANVL  355 (520)
Q Consensus       284 --~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~----~~~i~~l~~s~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~  355 (520)
                        .+++++++.+ |..+++|.+.+++++..+.++.    ...-+...|+...++++.-.+ .+.+.-||.++...     
T Consensus       313 Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr-----  387 (430)
T KOG0640|consen  313 FTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR-----  387 (430)
T ss_pred             EccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh-----
Confidence              7899999988 9999999999999999887421    112234567888888877654 46789999999853     


Q ss_pred             eeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCC
Q 009993          356 LVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       356 ~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~  392 (520)
                      ....-.+|.+.++.+.-+|  .-+++++.|..+++|--+
T Consensus       388 ~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  388 VALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             hhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence            2222348999999999987  689999999999999644

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.6e-23  Score=187.31  Aligned_cols=285  Identities=15%  Similarity=0.209  Sum_probs=216.5

Q ss_pred             cccEEEEEEccCCCEEEEEeCCCeEEEEECCCC--cEEEEeCCCCce--EEEEecCCC-EEEEEeCCCcEEEEEcccCcc
Q 009993          142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG--FSIASSKPLGCT--IRAVAADKK-LLVAGGTDGFIHCWRAVEVLP  216 (520)
Q Consensus       142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~--~~~~~~~~~~~~--v~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~  216 (520)
                      .++|+++.|+|...+|++|+.|++++||.++..  ..+..+.-...+  ..++.|+|. .+++++....++.||+.+...
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            478999999999999999999999999998643  344444333334  445669999 899999999999999988753


Q ss_pred             eeeeccCCccccceEEeccCC-CCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEE
Q 009993          217 HLFDISGSEKQNTQFRLWEHE-GPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVAS  291 (520)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~  291 (520)
                      .           .+..+.++. ..+..+.+  ++++|+..+..|.|.+....+++.+..+...+.|..+.  .+++.|++
T Consensus       293 ~-----------k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~  361 (514)
T KOG2055|consen  293 T-----------KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLA  361 (514)
T ss_pred             c-----------cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEE
Confidence            2           222233333 23333433  78899999999999999999999999999888888776  67777766


Q ss_pred             Ec-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEE
Q 009993          292 TS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL  370 (520)
Q Consensus       292 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l  370 (520)
                      ++ +|.|.+||++...++.++.....-.-+++|.++++.+||+|+..|.|.|||..+......++++.++..-...|+++
T Consensus       362 ~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl  441 (514)
T KOG2055|consen  362 SGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL  441 (514)
T ss_pred             EcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeee
Confidence            66 89999999999999988874333345678888999999999999999999987766666668888888888899999


Q ss_pred             EecC--CEEEEEe--CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEE
Q 009993          371 AFEF--PWLVSAA--GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVR  446 (520)
Q Consensus       371 ~~~~--~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~  446 (520)
                      .|++  +.|+.+|  .+..+++-.+.+......+....              -.-+...+++++|++.++|.|..+|.|.
T Consensus       442 ~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n--------------~~vg~vtc~aFSP~sG~lAvGNe~grv~  507 (514)
T KOG2055|consen  442 QFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSN--------------TKVGHVTCMAFSPNSGYLAVGNEAGRVH  507 (514)
T ss_pred             eeCcchhhhhhhhhccccceEEEeccceeeeccCCCCC--------------CcccceEEEEecCCCceEEeecCCCcee
Confidence            9977  5666555  47789999888754333222110              1112234445555556999999999999


Q ss_pred             EEeCC
Q 009993          447 IWNFS  451 (520)
Q Consensus       447 iwd~~  451 (520)
                      +|.+.
T Consensus       508 l~kL~  512 (514)
T KOG2055|consen  508 LFKLH  512 (514)
T ss_pred             eEeec
Confidence            99874

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.3e-23  Score=181.24  Aligned_cols=282  Identities=17%  Similarity=0.211  Sum_probs=210.1

Q ss_pred             EEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEec
Q 009993          157 LFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW  234 (520)
Q Consensus       157 l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                      +++.-.++++..      ..++.+.+|...|..++  .....+.+++.|.+-++|.++++.             +...+.
T Consensus       127 ivssFk~~t~~~------~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~-------------CL~~Y~  187 (481)
T KOG0300|consen  127 IVSSFKDGTVKF------RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA-------------CLATYT  187 (481)
T ss_pred             heeeecCCceeE------eehhhhcccccceeeehhhcCCcceeecccccceeEEeecccc-------------ceeeec
Confidence            444445555322      34567789999999887  334588899999999999998874             778899


Q ss_pred             cCCCCeEEEEE--cCCEEEEEecCCeEEEEEC------CC------------------------------Cc----EEEE
Q 009993          235 EHEGPITSLAL--DLTRIYSGSWDMTVRVWDR------AL------------------------------LK----CLKV  272 (520)
Q Consensus       235 ~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~------~~------------------------------~~----~~~~  272 (520)
                      ||.+.|+++.|  .+.++++++.|++..||..      ..                              +.    ++..
T Consensus       188 GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~  267 (481)
T KOG0300|consen  188 GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR  267 (481)
T ss_pred             ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee
Confidence            99999999999  5578999999999999962      10                              00    1111


Q ss_pred             ee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993          273 LR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  348 (520)
Q Consensus       273 ~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~  348 (520)
                      +. |...|.+..  ..++.+++++ |.+..+||+++++.+..+. +|....+.++-+|..+++++.+.|.+.++||++..
T Consensus       268 ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt-GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea  346 (481)
T KOG0300|consen  268 LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILT-GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA  346 (481)
T ss_pred             eeccccceEehhhhcCcceeeeeeccccceeeeeccCceecccc-CcchhccccccCCcceEEEEeccCceeEeccchhh
Confidence            22 555555554  6788999999 9999999999999999987 79999999999999999999999999999999855


Q ss_pred             ccccceeeeeeecCCcCCEEEEEec-CCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeE
Q 009993          349 CTEANVLLVATWIPHTGPVNSLAFE-FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLL  427 (520)
Q Consensus       349 ~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  427 (520)
                      -     ..+..|.+|+..|+++.|. ...+++|+.|.+|+|||+++...+                 ...+-......-.
T Consensus       347 I-----~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsp-----------------lATIRtdS~~NRv  404 (481)
T KOG0300|consen  347 I-----QSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSP-----------------LATIRTDSPANRV  404 (481)
T ss_pred             c-----ceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCc-----------------ceeeecCCcccee
Confidence            2     5688899999999999996 479999999999999999985321                 1111122223344


Q ss_pred             EEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCC
Q 009993          428 SVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGG  486 (520)
Q Consensus       428 ~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~  486 (520)
                      +++-.+..|+.--++..|++||+...... ++.+.     ....++|-+..++|..+-.
T Consensus       405 avs~g~~iIAiPhDNRqvRlfDlnG~Rla-RlPrt-----sRqgHrRMV~c~AW~eehp  457 (481)
T KOG0300|consen  405 AVSKGHPIIAIPHDNRQVRLFDLNGNRLA-RLPRT-----SRQGHRRMVTCCAWLEEHP  457 (481)
T ss_pred             EeecCCceEEeccCCceEEEEecCCCccc-cCCcc-----cccccceeeeeeeccccCc
Confidence            55555668888888899999999754332 21111     1123444567777776543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=3.4e-23  Score=193.01  Aligned_cols=298  Identities=19%  Similarity=0.191  Sum_probs=221.5

Q ss_pred             HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCC--EEEEEeCCCcEEE
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKK--LLVAGGTDGFIHC  208 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~--~l~sg~~dg~i~v  208 (520)
                      .+...++||++.|.|+...|.|.+|++|+.||+|+||.+.+|.+++++.-. ..|.+++  |.+.  .|+++-. ..+.+
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA~~-~~~~i  468 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDLCVLAVAVG-ECVLI  468 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCceeEEEEec-CceEE
Confidence            345567999999999999999999999999999999999999999987632 2455544  4443  4444433 33555


Q ss_pred             EEcccCcc--------eeeec-cCC---------------ccccceEEeccCCCCeEEEEE--cCCEEEEEecC---CeE
Q 009993          209 WRAVEVLP--------HLFDI-SGS---------------EKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD---MTV  259 (520)
Q Consensus       209 wd~~~~~~--------~~~~~-~~~---------------~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d---g~v  259 (520)
                      .+..-|..        .+... ...               +....+.....|...|..+.|  .|+||++...+   ..|
T Consensus       469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V  548 (733)
T KOG0650|consen  469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV  548 (733)
T ss_pred             eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence            55433310        00000 000               011123345568899999999  78999887654   578


Q ss_pred             EEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC
Q 009993          260 RVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE  336 (520)
Q Consensus       260 ~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~  336 (520)
                      .|.++.......-++ ..+.|.++.  |...++++++...|+|||+..+..++.+.. ....|..++.+|.|..|+.|+.
T Consensus       549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~t-g~kwiS~msihp~GDnli~gs~  627 (733)
T KOG0650|consen  549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLT-GSKWISSMSIHPNGDNLILGSY  627 (733)
T ss_pred             EEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhc-CCeeeeeeeecCCCCeEEEecC
Confidence            899987766655554 556666666  777899999999999999999888877763 5668999999999999999999


Q ss_pred             CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCC
Q 009993          337 DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEP  414 (520)
Q Consensus       337 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  414 (520)
                      |+.+..||+.-..     ++.+++.-|...+++++|++  .++++|+.||++.|+.-.-......   +       .+--
T Consensus       628 d~k~~WfDldlss-----kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~q---n-------pliV  692 (733)
T KOG0650|consen  628 DKKMCWFDLDLSS-----KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQ---N-------PLIV  692 (733)
T ss_pred             CCeeEEEEcccCc-----chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhc---C-------CceE
Confidence            9999999998775     67888999999999999998  6899999999999986542111100   0       0122


Q ss_pred             CcccccCccee----eEEEEecCC--EEEEecCCCeEEEE
Q 009993          415 PQRMLHGFECN----LLSVDIGAD--RIVCGGEEGIVRIW  448 (520)
Q Consensus       415 ~~~~~~~~~~~----v~~~~~~~~--~l~sg~~Dg~v~iw  448 (520)
                      +...+.+|...    |+...|++.  +|+++|.||+|++|
T Consensus       693 PlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  693 PLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            34556777766    888888887  99999999999998

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=9.7e-23  Score=175.72  Aligned_cols=267  Identities=15%  Similarity=0.164  Sum_probs=197.1

Q ss_pred             EEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCC
Q 009993          189 AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALL  267 (520)
Q Consensus       189 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~  267 (520)
                      .+++.+..|++++.||++++||+...              .......|..++.+.+| +...+++|+.||.|+.+|+.++
T Consensus        20 ~f~~~~~~LLvssWDgslrlYdv~~~--------------~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~   85 (323)
T KOG1036|consen   20 KFSPSSSDLLVSSWDGSLRLYDVPAN--------------SLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTG   85 (323)
T ss_pred             EEcCcCCcEEEEeccCcEEEEeccch--------------hhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCC
Confidence            34477888888999999999998654              22233468999999999 7789999999999999999999


Q ss_pred             cEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEE
Q 009993          268 KCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE  344 (520)
Q Consensus       268 ~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd  344 (520)
                      .......|...|.|+.  +....+++|+ |++|++||.+.......+.  ....|.++..  .|+.|++|+.|..+.+||
T Consensus        86 ~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v--~g~~LvVg~~~r~v~iyD  161 (323)
T KOG1036|consen   86 NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDV--SGNRLVVGTSDRKVLIYD  161 (323)
T ss_pred             cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--cCceEEEEec--cCCEEEEeecCceEEEEE
Confidence            8888888999999999  5577888888 9999999999866666654  3458888877  478999999999999999


Q ss_pred             cccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCccccc--
Q 009993          345 IINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH--  420 (520)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  420 (520)
                      +++.....    ...-..-.-.++|+++-|  .-.++++-||.|.+=.++......+.   +     ..+........  
T Consensus       162 LRn~~~~~----q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~sk---k-----yaFkCHr~~~~~~  229 (323)
T KOG1036|consen  162 LRNLDEPF----QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSK---K-----YAFKCHRLSEKDT  229 (323)
T ss_pred             cccccchh----hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhh---c-----eeEEeeecccCCc
Confidence            99874321    111223345688998876  67889999999988766653111000   0     00000000001  


Q ss_pred             CcceeeEEEEecCC--EEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccccccccc
Q 009993          421 GFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAA  495 (520)
Q Consensus       421 ~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~~  495 (520)
                      .---+|.++.|++-  .|||||.||.|.+||..+.+.+.+...-          ...+..++|+.||..+|.++..-
T Consensus       230 ~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~----------~~SI~slsfs~dG~~LAia~sy~  296 (323)
T KOG1036|consen  230 EIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY----------ETSISSLSFSMDGSLLAIASSYQ  296 (323)
T ss_pred             eEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC----------CCceEEEEeccCCCeEEEEechh
Confidence            11134666666654  8999999999999999998887765332          23367899999999999976543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=1.5e-22  Score=173.92  Aligned_cols=270  Identities=15%  Similarity=0.193  Sum_probs=194.4

Q ss_pred             CceEEEEec-CCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEE
Q 009993          184 GCTIRAVAA-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVR  260 (520)
Q Consensus       184 ~~~v~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~  260 (520)
                      ....++|+| ...++++||.||+|++|+++...           .........|.++|.+++|  +|..+++|+.|+.++
T Consensus        29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g-----------~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k   97 (347)
T KOG0647|consen   29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSG-----------QLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAK   97 (347)
T ss_pred             chheeEeccccCceEEecccCCceEEEEEecCC-----------cccchhhhccCCCeEEEEEccCCceEEeeccCCceE
Confidence            334556667 56677799999999999997631           1112345579999999999  889999999999999


Q ss_pred             EEECCCCcEEEEeeeccCEEEEe----eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEe
Q 009993          261 VWDRALLKCLKVLRHSDWVYGLA----PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG  335 (520)
Q Consensus       261 iwd~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~  335 (520)
                      +||+.+++....-.|..+|.++.    +.-..|++|+ |.+|+.||++...++.++.  -...++++..  ....++++.
T Consensus        98 ~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~--LPeRvYa~Dv--~~pm~vVat  173 (347)
T KOG0647|consen   98 LWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ--LPERVYAADV--LYPMAVVAT  173 (347)
T ss_pred             EEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee--ccceeeehhc--cCceeEEEe
Confidence            99999998777777999999887    2334789999 9999999999999998886  5667777765  346788899


Q ss_pred             CCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe--cCCEEEEEeCCCcEEEEeCCcccc--cCCCCCCCceeeeee
Q 009993          336 EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLR--SGRPTSGKRVSRVIE  411 (520)
Q Consensus       336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~  411 (520)
                      .+..|.+|+++++..+..  .+  ...-.-.++||+.  +.+..+.|+-+|.+.|..+..+..  .+....++..     
T Consensus       174 a~r~i~vynL~n~~te~k--~~--~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~-----  244 (347)
T KOG0647|consen  174 AERHIAVYNLENPPTEFK--RI--ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRST-----  244 (347)
T ss_pred             cCCcEEEEEcCCCcchhh--hh--cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccC-----
Confidence            999999999988732111  11  1112235677776  446669999999999999987522  1111111110     


Q ss_pred             cCCCcccccCcceeeEEEEecC--CEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccc
Q 009993          412 VEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTD  489 (520)
Q Consensus       412 ~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~  489 (520)
                        ..   ..+.--.|.++.|++  ..|+|+|.||+..+||-.....++....          +...++.+.|+.+|..++
T Consensus       245 --~~---~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~----------~~qpItcc~fn~~G~ifa  309 (347)
T KOG0647|consen  245 --NS---VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET----------HPQPITCCSFNRNGSIFA  309 (347)
T ss_pred             --CC---CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc----------CCCccceeEecCCCCEEE
Confidence              00   011112344555555  4999999999999999988777665332          234468999999999888


Q ss_pred             ccc
Q 009993          490 QCS  492 (520)
Q Consensus       490 ~~s  492 (520)
                      -+.
T Consensus       310 YA~  312 (347)
T KOG0647|consen  310 YAL  312 (347)
T ss_pred             EEe
Confidence            753

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=5.9e-23  Score=194.99  Aligned_cols=318  Identities=17%  Similarity=0.244  Sum_probs=226.7

Q ss_pred             hhccccccEEEEEEccC-----------CCEEEEEeCCCeEEEEECCCCc---EEEE----------e------------
Q 009993          137 VLYGHTEAVLTVFVLAS-----------AKLLFTSGYDSIVRMWHLEDGF---SIAS----------S------------  180 (520)
Q Consensus       137 ~l~~h~~~V~~l~~~~~-----------~~~l~sgs~dg~v~vwd~~~~~---~~~~----------~------------  180 (520)
                      .+-.|...|+.+.--|.           ...++|++.|++||+||++.+.   ..+.          .            
T Consensus       364 s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~  443 (1080)
T KOG1408|consen  364 SMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDA  443 (1080)
T ss_pred             eeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhc
Confidence            44568888888765551           1358999999999999997531   1000          0            


Q ss_pred             ------------CC--CCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-
Q 009993          181 ------------KP--LGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-  245 (520)
Q Consensus       181 ------------~~--~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-  245 (520)
                                  -+  .+....+++|++++|++|..-|.++||++.+-             .....+..|...|.|+.| 
T Consensus       444 ~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l-------------~~~~~~eAHesEilcLeyS  510 (1080)
T KOG1408|consen  444 SAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL-------------EYTCFMEAHESEILCLEYS  510 (1080)
T ss_pred             cCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh-------------hhhhheecccceeEEEeec
Confidence                        00  12234456699999999999999999998654             345567789999999999 


Q ss_pred             ----cCCEEEEEecCCeEEEEECCCC-cEEEEee-eccCEEEEe--eCC--CEEEEEc-CCeEEEEECCC-CeeeEEeec
Q 009993          246 ----DLTRIYSGSWDMTVRVWDRALL-KCLKVLR-HSDWVYGLA--PHD--TTVASTS-GSDVYIWDTNS-GCLLTVVNG  313 (520)
Q Consensus       246 ----~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~-~~~~v~~~~--~~~--~~l~~~~-d~~i~iwd~~~-~~~~~~~~~  313 (520)
                          ..++|++++.|..|.+||+... ..++++. |...|+++.  ..|  ..+++++ |..|. |+... ......+..
T Consensus       511 ~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r  589 (1080)
T KOG1408|consen  511 FPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPR  589 (1080)
T ss_pred             CchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhh-eehhccccCceeccc
Confidence                2367999999999999998654 4455665 899999987  333  4556666 66554 33332 111122221


Q ss_pred             c----cccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec---CCcCCEEEEEecC--CEEEEEeCCC
Q 009993          314 A----HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI---PHTGPVNSLAFEF--PWLVSAAGDG  384 (520)
Q Consensus       314 ~----~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~--~~l~s~s~dg  384 (520)
                      +    ....++.|+..|..+++++++.|..|+|||+..+      +..+.++   +|.+....+..+|  .||++...|.
T Consensus       590 ~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg------Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdk  663 (1080)
T KOG1408|consen  590 HTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG------KQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDK  663 (1080)
T ss_pred             cccccccceEEEeeeCCCcceEEEEecccceEEEecccc------ceeeeecccccCCCceEEEEECCCccEEEEeecCC
Confidence            1    2346889999999999999999999999999999      5666665   4667788888877  6999999999


Q ss_pred             cEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEEecCCCeEEEEeCCchHhHHHHhhh
Q 009993          385 KLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRARA  462 (520)
Q Consensus       385 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~~~  462 (520)
                      ++.++|+.+                   .++.....||...|+.+.|.++  .|++.+.||.|.||.+.....+....+.
T Consensus       664 tl~~~Df~s-------------------gEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~mii~m~~r~  724 (1080)
T KOG1408|consen  664 TLCFVDFVS-------------------GECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTMIIRMVNRN  724 (1080)
T ss_pred             ceEEEEecc-------------------chhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchhHhHHHHHHh
Confidence            999999988                   5566677899999999999877  9999999999999999876554443322


Q ss_pred             hcccccchhhhhccceeeeccCCCcccccccccc
Q 009993          463 LRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAK  496 (520)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~~~  496 (520)
                      . ..+...  .....+.-..|+..--+.++.+.+
T Consensus       725 ~-~lr~rq--~~~~~~~pl~p~~p~d~~~~~~p~  755 (1080)
T KOG1408|consen  725 G-RLRVRQ--LEKFIAVPLEPDNPNDASCSANPK  755 (1080)
T ss_pred             h-HHHHHh--ccCCcCCCCCCCCCCCCccccCcc
Confidence            1 111111  122345555666555555555444

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.91  E-value=4.3e-23  Score=193.83  Aligned_cols=271  Identities=19%  Similarity=0.218  Sum_probs=204.5

Q ss_pred             CCEEEEEeCCCeEEEEECCCCcE------EEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCc
Q 009993          154 AKLLFTSGYDSIVRMWHLEDGFS------IASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE  225 (520)
Q Consensus       154 ~~~l~sgs~dg~v~vwd~~~~~~------~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~  225 (520)
                      ...|+.+..||.|.++|......      +..+..|...|..+.  |....|++++.|.++++||+.++..         
T Consensus        64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l---------  134 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL---------  134 (720)
T ss_pred             cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee---------
Confidence            46889999999999999865422      355678999999887  7667899999999999999987642         


Q ss_pred             cccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCc--------------------EEEEe--------e
Q 009993          226 KQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLK--------------------CLKVL--------R  274 (520)
Q Consensus       226 ~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~--------------------~~~~~--------~  274 (520)
                        .....+.||.+.|.+++|   ++..+++|+.||.|.|||++-..                    ..+.+        .
T Consensus       135 --~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA  212 (720)
T KOG0321|consen  135 --VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA  212 (720)
T ss_pred             --ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence              122357799999999999   77899999999999999985321                    00000        0


Q ss_pred             eccC----EEEEe-eCCCEEEEEc--CCeEEEEECCCCeeeEEeec-------cc---ccceEEEEecCCCCEEEEEeCC
Q 009993          275 HSDW----VYGLA-PHDTTVASTS--GSDVYIWDTNSGCLLTVVNG-------AH---VGNTKSLARSHTGDFLFTGGED  337 (520)
Q Consensus       275 ~~~~----v~~~~-~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~~-------~~---~~~i~~l~~s~~~~~l~tg~~d  337 (520)
                      +...    |+.+. .|+..|++++  |+.|+|||+++.........       .|   .-.+.++.....|.+|++.+.|
T Consensus       213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD  292 (720)
T KOG0321|consen  213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD  292 (720)
T ss_pred             ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence            2222    34444 6888888877  89999999998654332211       12   3357788888888999998899


Q ss_pred             CeEEEEEcccCccccceeeeeeecCCcCC----EEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecC
Q 009993          338 GAIHMYEIINDCTEANVLLVATWIPHTGP----VNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVE  413 (520)
Q Consensus       338 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~----v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  413 (520)
                      +.|++|++.....    .++..+.++...    -..+.+++.++++|+.|...++|.+.+.                  .
T Consensus       293 ~sIy~ynm~s~s~----sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~------------------e  350 (720)
T KOG0321|consen  293 NSIYFYNMRSLSI----SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSP------------------E  350 (720)
T ss_pred             CcEEEEeccccCc----CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCc------------------c
Confidence            9999999987643    345555554322    1334456789999999999999999986                  5


Q ss_pred             CCcccccCcceeeEEEEecCC---EEEEecCCCeEEEEeCCchHhHH
Q 009993          414 PPQRMLHGFECNLLSVDIGAD---RIVCGGEEGIVRIWNFSQAFEIE  457 (520)
Q Consensus       414 ~~~~~~~~~~~~v~~~~~~~~---~l~sg~~Dg~v~iwd~~~~~~~~  457 (520)
                      .+...+.||...|+++.|.+.   -++|+++|-+++||++.++.+-.
T Consensus       351 ~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~  397 (720)
T KOG0321|consen  351 APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEI  397 (720)
T ss_pred             CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhc
Confidence            566778899999999998765   78888999999999998765544

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=3.1e-22  Score=195.75  Aligned_cols=236  Identities=21%  Similarity=0.249  Sum_probs=197.2

Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC-cEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcce
Q 009993          139 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-FSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPH  217 (520)
Q Consensus       139 ~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~  217 (520)
                      .+|+.+-+.++|.|+|++|++++.||.|++|+.... +...++..++..|.++...+++|++|+.+++|.+|.+.++.. 
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~-   88 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEE-   88 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCc-
Confidence            589999999999999999999999999999998766 444444448889999998899999999999999999877642 


Q ss_pred             eeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEE
Q 009993          218 LFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVAST  292 (520)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~  292 (520)
                                  ...+...+-+++++++  +|++++.||.|-.|++-++.+......++ |..+|.++.  |.+++|++.
T Consensus        89 ------------~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvs  156 (933)
T KOG1274|consen   89 ------------DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVS  156 (933)
T ss_pred             ------------cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEE
Confidence                        1123334678888888  66799999999999999999888888877 999999998  889999999


Q ss_pred             c-CCeEEEEECCCCeeeEEeec-------ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeee--cC
Q 009993          293 S-GSDVYIWDTNSGCLLTVVNG-------AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW--IP  362 (520)
Q Consensus       293 ~-d~~i~iwd~~~~~~~~~~~~-------~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~--~~  362 (520)
                      + ||.|++||+.++.....+..       .....+..++|+|++..++..+.|+.|++|+..+..      ....+  ..
T Consensus       157 s~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we------~~f~Lr~~~  230 (933)
T KOG1274|consen  157 SCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE------LQFKLRDKL  230 (933)
T ss_pred             ecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce------eheeecccc
Confidence            8 99999999999877665542       113456789999999999999999999999998883      33333  33


Q ss_pred             CcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993          363 HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       363 h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  393 (520)
                      +...+.++.|+|  .|||+++.||.|.|||..+
T Consensus       231 ~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  231 SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             cccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            455599999987  6999999999999999986

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=5.6e-22  Score=171.90  Aligned_cols=272  Identities=14%  Similarity=0.146  Sum_probs=200.6

Q ss_pred             EEeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEE
Q 009993          178 ASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG  253 (520)
Q Consensus       178 ~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~  253 (520)
                      +.+......|.++  +.+|..+++++.|.++++||..++.             ...++..+.-.|..++|  ..+.++.+
T Consensus         8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~-------------~~~ti~skkyG~~~~~Fth~~~~~i~s   74 (311)
T KOG1446|consen    8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK-------------QVKTINSKKYGVDLACFTHHSNTVIHS   74 (311)
T ss_pred             cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc-------------eeeEeecccccccEEEEecCCceEEEc
Confidence            3444444555555  4899999999999999999998763             45556666667777888  56677777


Q ss_pred             ec--CCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCC
Q 009993          254 SW--DMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT  327 (520)
Q Consensus       254 s~--dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~  327 (520)
                      +.  |.+|+..++.+.+.++.+. |...|++++  |-+..+++++ |++|++||++..++...+.   ...-...+|.|.
T Consensus        75 Stk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~---~~~~pi~AfDp~  151 (311)
T KOG1446|consen   75 STKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN---LSGRPIAAFDPE  151 (311)
T ss_pred             cCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe---cCCCcceeECCC
Confidence            66  8899999999999999998 999999988  8889999999 9999999999888777664   233346789999


Q ss_pred             CCEEEEEeCCCeEEEEEcccCccccceeeeeeec---CCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCC
Q 009993          328 GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI---PHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTS  402 (520)
Q Consensus       328 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~  402 (520)
                      |-++|++.....|++||++.-...    +..++.   +.....+.|.|+|  ++|+.++..+.+++.|.-++........
T Consensus       152 GLifA~~~~~~~IkLyD~Rs~dkg----PF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~  227 (311)
T KOG1446|consen  152 GLIFALANGSELIKLYDLRSFDKG----PFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSG  227 (311)
T ss_pred             CcEEEEecCCCeEEEEEecccCCC----CceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEee
Confidence            999999988889999999876431    222222   4466789999965  7999999999999999987643221111


Q ss_pred             CCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeec
Q 009993          403 GKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMS  482 (520)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  482 (520)
                      ..            .  .+....-.++.|+++++++|+.||+|.+|+++++..+.......-+         ....+.|+
T Consensus       228 ~~------------~--~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~---------~~~~~~fn  284 (311)
T KOG1446|consen  228 YP------------N--AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGG---------PVSCVRFN  284 (311)
T ss_pred             cc------------C--CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCC---------CccccccC
Confidence            00            0  0001123456688889999999999999999999887665443111         13445577


Q ss_pred             cCCCcccccc
Q 009993          483 SKGGRTDQCS  492 (520)
Q Consensus       483 ~~g~~~~~~s  492 (520)
                      |.-..+++++
T Consensus       285 P~~~mf~sa~  294 (311)
T KOG1446|consen  285 PRYAMFVSAS  294 (311)
T ss_pred             CceeeeeecC
Confidence            7666666544

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=9.7e-23  Score=174.30  Aligned_cols=215  Identities=22%  Similarity=0.318  Sum_probs=163.9

Q ss_pred             CCCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCccee--eeccCCccccceEEeccCCCCeEEEEE---cCCEEEEE
Q 009993          182 PLGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVLPHL--FDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSG  253 (520)
Q Consensus       182 ~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~  253 (520)
                      .|.+.|.++.   ..|+++++|+.||.|.+||++.....-  .-+-..........-.+|.-.|.++.|   |...+.++
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss  120 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS  120 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence            4556666665   568899999999999999997653100  000000000011122468889999999   77899999


Q ss_pred             ecCCeEEEEECCCCcEEEEeeeccCEEEEe-----eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCC
Q 009993          254 SWDMTVRVWDRALLKCLKVLRHSDWVYGLA-----PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT  327 (520)
Q Consensus       254 s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~-----~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~  327 (520)
                      +.|.++++||..+.+....+..++.|++-+     ..-.++++|. +-.|++.|+.+|..-..+. +|...|.++.|+|.
T Consensus       121 SFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV~Wsp~  199 (397)
T KOG4283|consen  121 SFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLAVEWSPS  199 (397)
T ss_pred             cccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-cccCceEEEEeccC
Confidence            999999999999999999999888887643     3455777777 7889999999999999997 79999999999998


Q ss_pred             CCE-EEEEeCCCeEEEEEcccCcc---------ccceeeeeeecCCcCCEEEEEec--CCEEEEEeCCCcEEEEeCCccc
Q 009993          328 GDF-LFTGGEDGAIHMYEIINDCT---------EANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRKLL  395 (520)
Q Consensus       328 ~~~-l~tg~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~  395 (520)
                      ..+ |++|+.||.|++||++....         ...++.+.+-..|.+.|+.++|.  +.++++++.|..+++|+..++.
T Consensus       200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence            875 67899999999999986521         01122333456788999999994  5799999999999999998764


Q ss_pred             cc
Q 009993          396 RS  397 (520)
Q Consensus       396 ~~  397 (520)
                      ..
T Consensus       280 nt  281 (397)
T KOG4283|consen  280 NT  281 (397)
T ss_pred             cc
Confidence            43

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=6.8e-22  Score=180.88  Aligned_cols=361  Identities=15%  Similarity=0.147  Sum_probs=244.4

Q ss_pred             hcCCCCCCCCCCCCCCCcccHH-------Hhhhhhcccc-ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC
Q 009993          111 RWGLPIASAPLGAGFSDDKSWK-------ELIDVLYGHT-EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP  182 (520)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~W~-------~~~~~l~~h~-~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~  182 (520)
                      .|.+-+..++..-|..-...|.       +...+++++. .-|.|++|.++|. ++||..+|.|.||+..+.+..+....
T Consensus       207 ~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~a  285 (626)
T KOG2106|consen  207 TFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHA  285 (626)
T ss_pred             EeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeee
Confidence            4543333444445555556665       2244555553 6799999999987 78999999999999988877777779


Q ss_pred             CCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCccee---------------------------eeccCCccccceEEec
Q 009993          183 LGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHL---------------------------FDISGSEKQNTQFRLW  234 (520)
Q Consensus       183 ~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~---------------------------~~~~~~~~~~~~~~~~  234 (520)
                      |...|.++. .....|++|+.|..|..||-.-.....                           +-+.+.-.........
T Consensus       286 H~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~  365 (626)
T KOG2106|consen  286 HDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQ  365 (626)
T ss_pred             cCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEE
Confidence            999999887 334455669999999999831111000                           0011111222334455


Q ss_pred             cCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeE
Q 009993          235 EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLT  309 (520)
Q Consensus       235 ~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~  309 (520)
                      +|......++.  +.+.+++++.|+.+++|+  ..+.+.+....+++.|+.  |.| .++.|. .|...+.|.++...+.
T Consensus       366 gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~  442 (626)
T KOG2106|consen  366 GHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT  442 (626)
T ss_pred             ecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE
Confidence            78888888888  557899999999999999  556666666666666666  778 888888 8999999999966665


Q ss_pred             EeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEE
Q 009993          310 VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLS  387 (520)
Q Consensus       310 ~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~  387 (520)
                      .-.  ...+++++.|+|+|.+||.|+.|+.|++|.+.......  ..+...  |..+|+.+.|++  ++|.+-+.|-.|-
T Consensus       443 ~~~--d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y--~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiL  516 (626)
T KOG2106|consen  443 IHT--DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKY--SRVGKC--SGSPITHLDWSSDSQFLVSNSGDYEIL  516 (626)
T ss_pred             EEe--cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEE--EEeeee--cCceeEEeeecCCCceEEeccCceEEE
Confidence            544  38899999999999999999999999999998774311  222223  338999999964  7999999999999


Q ss_pred             EEeCCcccccCC-----CCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhh
Q 009993          388 LIDVRKLLRSGR-----PTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARA  462 (520)
Q Consensus       388 vwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~  462 (520)
                      .|..........     +....+..-+....    ...+....+.+.+...+.+++|.+.|+|++|...--..-      
T Consensus       517 yW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g----~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~r------  586 (626)
T KOG2106|consen  517 YWKPSECKQITSVKDVKWATYTCTLGFEVFG----GSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPR------  586 (626)
T ss_pred             EEccccCcccceecceeeeeeEEEEEEEEec----ccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCc------
Confidence            995443222211     00000000000000    112233445555566779999999999999987632111      


Q ss_pred             hcccccchhhhhccceeeeccCCCcccccc
Q 009993          463 LRGIRLENRMRRRKLQTEMSSKGGRTDQCS  492 (520)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s  492 (520)
                       ...-....+.+-+..++|.-+...+.+..
T Consensus       587 -A~~he~~ghs~~vt~V~Fl~~d~~li~tg  615 (626)
T KOG2106|consen  587 -APSHEYGGHSSHVTNVAFLCKDSHLISTG  615 (626)
T ss_pred             -ccceeeccccceeEEEEEeeCCceEEecC
Confidence             11112334556678999998888777765

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.91  E-value=2.6e-22  Score=200.20  Aligned_cols=241  Identities=16%  Similarity=0.185  Sum_probs=197.5

Q ss_pred             hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCC------------------CcEEEEeCCCCceEEEEe--cC
Q 009993          134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED------------------GFSIASSKPLGCTIRAVA--AD  193 (520)
Q Consensus       134 ~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~------------------~~~~~~~~~~~~~v~~~~--~~  193 (520)
                      .+.+...|.+.|+|+.|+|||++||+||.|+.|.||....                  .+.+..+.+|...|..+.  |+
T Consensus        61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~  140 (942)
T KOG0973|consen   61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD  140 (942)
T ss_pred             hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence            3556778999999999999999999999999999998762                  135677889999998776  89


Q ss_pred             CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc--CCEEEEEecCCeEEEEECCCCcEEE
Q 009993          194 KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSWDMTVRVWDRALLKCLK  271 (520)
Q Consensus       194 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~v~iwd~~~~~~~~  271 (520)
                      +.++++++.|++|.+||..+.             .....+.+|.+.|..+.||  |+++++-+.|++|++|++.+..+.+
T Consensus       141 ~~~lvS~s~DnsViiwn~~tF-------------~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k  207 (942)
T KOG0973|consen  141 DSLLVSVSLDNSVIIWNAKTF-------------ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK  207 (942)
T ss_pred             ccEEEEecccceEEEEccccc-------------eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE
Confidence            999999999999999998764             3677889999999999995  5899999999999999988877777


Q ss_pred             Eee-------eccCEEEE--eeCCCEEEEEc--C---CeEEEEECCCCeeeEEeecccccceEEEEecCC----------
Q 009993          272 VLR-------HSDWVYGL--APHDTTVASTS--G---SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT----------  327 (520)
Q Consensus       272 ~~~-------~~~~v~~~--~~~~~~l~~~~--d---~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~----------  327 (520)
                      .+.       .......+  +|+|.+|++..  .   ..+.|.+..+.+.-..+. ||..++.++.|+|.          
T Consensus       208 ~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv-GH~~p~evvrFnP~lfe~~~~ng~  286 (942)
T KOG0973|consen  208 SITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV-GHSAPVEVVRFNPKLFERNNKNGT  286 (942)
T ss_pred             eeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee-cCCCceEEEEeChHHhccccccCC
Confidence            775       12223333  49999999976  2   458899988877777776 79999999999981          


Q ss_pred             ---CC----EEEEEeCCCeEEEEEcccCccccceeeeeee-cCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993          328 ---GD----FLFTGGEDGAIHMYEIINDCTEANVLLVATW-IPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       328 ---~~----~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  394 (520)
                         .+    .+|+|+.|++|.||.....      +++... .-....|..++|+|  -.|+++|.||+|.+..+...
T Consensus       287 ~~~~~~~y~i~AvgSqDrSlSVW~T~~~------RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  287 STQPNCYYCIAAVGSQDRSLSVWNTALP------RPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             ccCCCcceEEEEEecCCccEEEEecCCC------CchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence               11    6789999999999998666      333222 22356899999975  58999999999999998753

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.91  E-value=1.4e-21  Score=189.03  Aligned_cols=244  Identities=18%  Similarity=0.224  Sum_probs=197.7

Q ss_pred             HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC-cE----EEEeCCCCceEEEEe-cC--CCEEEEEeCCC
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-FS----IASSKPLGCTIRAVA-AD--KKLLVAGGTDG  204 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~-~~----~~~~~~~~~~v~~~~-~~--~~~l~sg~~dg  204 (520)
                      ...+++.+|.+.|.-+.  +-|.+++++..++.+.||+..++ +.    +...+.....|+++. |.  =+.++.|+.+|
T Consensus       105 ~i~~~~~~~~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G  182 (910)
T KOG1539|consen  105 HIRHTTLLHGAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQG  182 (910)
T ss_pred             eEEEEeccccceEEEEe--eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEecchhheeeEEEeecCC
Confidence            34667788888888764  35899999999999999999874 22    112223333377776 43  35789999999


Q ss_pred             cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCCcEEEEeeec-cCEEE
Q 009993          205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLRHS-DWVYG  281 (520)
Q Consensus       205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~v~~  281 (520)
                      .+.+|+++++             +.+..+.++...|+++.-.+  +.++.|..+|+|.+++++.++.+.++++. +.|++
T Consensus       183 ~lql~Nvrt~-------------K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~Vts  249 (910)
T KOG1539|consen  183 RLQLWNVRTG-------------KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTS  249 (910)
T ss_pred             cEEEEEeccC-------------cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeE
Confidence            9999999886             47788899999999998866  77999999999999999999999999986 99999


Q ss_pred             Ee--eCCCEEEE-Ec-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeee
Q 009993          282 LA--PHDTTVAS-TS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV  357 (520)
Q Consensus       282 ~~--~~~~~l~~-~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~  357 (520)
                      ++  .||+.+.+ +. .|.+.+||++..+.+..+...|.+.+....|.|....+++++.|+.+++|=.+++.-  .+..+
T Consensus       250 lSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg--~pR~L  327 (910)
T KOG1539|consen  250 LSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDG--VPRLL  327 (910)
T ss_pred             EEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCC--cchhe
Confidence            98  45765544 44 699999999999999988888999999999999999999999999998886665422  23566


Q ss_pred             eeecCCcCCEEEEEec---CCEEEEEeCCCcEEEEeCCc
Q 009993          358 ATWIPHTGPVNSLAFE---FPWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       358 ~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~  393 (520)
                      +.-.||..|..++.|-   +.++.+++.|++.+.+++..
T Consensus       328 R~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~  366 (910)
T KOG1539|consen  328 RSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVIS  366 (910)
T ss_pred             eeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhH
Confidence            7778999999999994   46888999999888887753

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.90  E-value=1.2e-21  Score=185.93  Aligned_cols=321  Identities=18%  Similarity=0.238  Sum_probs=234.2

Q ss_pred             cCcchhhhhhhhhcCCCCC-CCCCCCCCCCc--ccHHHh-----------------------------------hhhhcc
Q 009993           99 SDHHAWKEFYCERWGLPIA-SAPLGAGFSDD--KSWKEL-----------------------------------IDVLYG  140 (520)
Q Consensus        99 ~~~~lW~~~~~~~~~~~~~-~~~~~~~~~~~--~~W~~~-----------------------------------~~~l~~  140 (520)
                      ..|..|-+  ...|..+.. .+.+++++.|.  ++|+-.                                   -..+.|
T Consensus       188 ~GH~DWIr--sl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~G  265 (764)
T KOG1063|consen  188 EGHTDWIR--SLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMG  265 (764)
T ss_pred             eccchhhh--hhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcC
Confidence            46677743  455655555 55566665554  788710                                   134569


Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEE--EE-----eCCCCceEE--EEecCCCEEEEEeCCCcEEEEEc
Q 009993          141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI--AS-----SKPLGCTIR--AVAADKKLLVAGGTDGFIHCWRA  211 (520)
Q Consensus       141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~--~~-----~~~~~~~v~--~~~~~~~~l~sg~~dg~i~vwd~  211 (520)
                      |.+.|+++.|+|.+..|+++|.|.++.+|...+..-+  ..     ..+....-.  -++++++.+++-+..|..++|..
T Consensus       266 HeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt  345 (764)
T KOG1063|consen  266 HEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKT  345 (764)
T ss_pred             cccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEec
Confidence            9999999999999999999999999999987654222  11     122222222  24589999999999999999983


Q ss_pred             ccCcceeeeccCCccccceEEeccCCCCeEEEEEc--CCEEEEEecCCeEEEEECC-CCcEEEEee----eccCEEEEe-
Q 009993          212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSWDMTVRVWDRA-LLKCLKVLR----HSDWVYGLA-  283 (520)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~v~iwd~~-~~~~~~~~~----~~~~v~~~~-  283 (520)
                      .+.          ..........||.+.|++++|+  |.+|++.|.|.+-|++-.- ....-+.+.    |...++|++ 
T Consensus       346 ~d~----------~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~  415 (764)
T KOG1063|consen  346 KDK----------TFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSF  415 (764)
T ss_pred             cCc----------cceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeeh
Confidence            332          1123444567999999999995  8999999999999998654 112223332    888888888 


Q ss_pred             eC-CCEEEEEc-CCeEEEEECCCC---------------e----------------------------e-----------
Q 009993          284 PH-DTTVASTS-GSDVYIWDTNSG---------------C----------------------------L-----------  307 (520)
Q Consensus       284 ~~-~~~l~~~~-d~~i~iwd~~~~---------------~----------------------------~-----------  307 (520)
                      .+ ...+++|. ...+|+|+....               .                            .           
T Consensus       416 vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~  495 (764)
T KOG1063|consen  416 VNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAA  495 (764)
T ss_pred             ccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccccc
Confidence            33 55666666 567888876420               0                            0           


Q ss_pred             ----------------------eEEeecccccceEEEEecCCCCEEEEEeCCC-----eEEEEEcccCccccceeeeeee
Q 009993          308 ----------------------LTVVNGAHVGNTKSLARSHTGDFLFTGGEDG-----AIHMYEIINDCTEANVLLVATW  360 (520)
Q Consensus       308 ----------------------~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg-----~i~iwd~~~~~~~~~~~~~~~~  360 (520)
                                            +.++ .||...|++++.+|+++++|+++...     .|++|+..+.      ..++.+
T Consensus       496 ~p~~L~ePP~EdqLq~~tLwPEv~KL-YGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W------~~~~~L  568 (764)
T KOG1063|consen  496 APCELTEPPTEDQLQQNTLWPEVHKL-YGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW------LQVQEL  568 (764)
T ss_pred             CchhccCCChHHHHHHhccchhhHHh-ccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch------hhhhee
Confidence                                  0111 15888899999999999999988754     4999999888      667789


Q ss_pred             cCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EE
Q 009993          361 IPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RI  436 (520)
Q Consensus       361 ~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l  436 (520)
                      .+|.-.|+.++|+|  .+|++.+.|.++.+|........               +........|+.-|++.+|.++  ++
T Consensus       569 ~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~---------------e~~fa~~k~HtRIIWdcsW~pde~~F  633 (764)
T KOG1063|consen  569 EGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD---------------EFRFACLKAHTRIIWDCSWSPDEKYF  633 (764)
T ss_pred             cccceEEEEEEECCCCcEEEEeecCceEEeeeeecccch---------------hhhhccccccceEEEEcccCccccee
Confidence            99999999999976  69999999999999998653211               1112235778888888888776  89


Q ss_pred             EEecCCCeEEEEeCCch
Q 009993          437 VCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       437 ~sg~~Dg~v~iwd~~~~  453 (520)
                      +|+|.|.+|++|...+.
T Consensus       634 aTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  634 ATASRDKKVKVWEEPDL  650 (764)
T ss_pred             EEecCCceEEEEeccCc
Confidence            99999999999999887

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=2e-22  Score=181.73  Aligned_cols=243  Identities=19%  Similarity=0.223  Sum_probs=183.1

Q ss_pred             CCCEEEEEeCCCcEEEEEcccCc--ceeeeccCCcc------ccceEEeccCCCCeEEEEEcC---CEEEEEecCCeEEE
Q 009993          193 DKKLLVAGGTDGFIHCWRAVEVL--PHLFDISGSEK------QNTQFRLWEHEGPITSLALDL---TRIYSGSWDMTVRV  261 (520)
Q Consensus       193 ~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~~~~~------~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~v~i  261 (520)
                      .|+++|.|+.|..|.|||+.-..  ...+.+.....      ........+|+..|.+++|+.   +.|++||.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            47799999999999999974321  11111111110      111223447999999999944   67999999999999


Q ss_pred             EECCCCcEEEEee-eccCEEEEe---eCCCEEEEEc-CCeEEEEECCCCe-eeEEeecccccceEEEEecCCC-CEEEEE
Q 009993          262 WDRALLKCLKVLR-HSDWVYGLA---PHDTTVASTS-GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTG-DFLFTG  334 (520)
Q Consensus       262 wd~~~~~~~~~~~-~~~~v~~~~---~~~~~l~~~~-d~~i~iwd~~~~~-~~~~~~~~~~~~i~~l~~s~~~-~~l~tg  334 (520)
                      ||+.++++..++. |...|.++.   ..+..+++|+ |++|.+.|.+... .-..+.  ..+.|..++|.|.. ..++++
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk--~~g~VEkv~w~~~se~~f~~~  348 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK--FDGEVEKVAWDPHSENSFFVS  348 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE--eccceEEEEecCCCceeEEEe
Confidence            9999999999998 899999998   4577899999 9999999999532 222332  56789999999855 567788


Q ss_pred             eCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEec---CCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeee
Q 009993          335 GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE---FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE  411 (520)
Q Consensus       335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  411 (520)
                      ..||+++-+|+|...     +++.++..|.++|.+|+++   |.++++++.|+.|++|++........            
T Consensus       349 tddG~v~~~D~R~~~-----~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v------------  411 (463)
T KOG0270|consen  349 TDDGTVYYFDIRNPG-----KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV------------  411 (463)
T ss_pred             cCCceEEeeecCCCC-----CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccc------------
Confidence            899999999999886     7899999999999999996   57999999999999999975321100            


Q ss_pred             cCCCcccccCcceeeEEEEecCC---EEEEecCCCeEEEEeCCchHhHHHH
Q 009993          412 VEPPQRMLHGFECNLLSVDIGAD---RIVCGGEEGIVRIWNFSQAFEIERR  459 (520)
Q Consensus       412 ~~~~~~~~~~~~~~v~~~~~~~~---~l~sg~~Dg~v~iwd~~~~~~~~~~  459 (520)
                         ..+.+.  -....|+.++++   .++.||..+.++|||+.+...+++.
T Consensus       412 ---~~~~~~--~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ka  457 (463)
T KOG0270|consen  412 ---KEHSFK--LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKA  457 (463)
T ss_pred             ---cccccc--ccceeecccCCCcceEEEecCccceEEEeecccChhHHHh
Confidence               000000  012345555554   8999999999999999998877664

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=3.2e-22  Score=181.59  Aligned_cols=228  Identities=21%  Similarity=0.310  Sum_probs=183.0

Q ss_pred             CEEEEEeC-CCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceE
Q 009993          155 KLLFTSGY-DSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF  231 (520)
Q Consensus       155 ~~l~sgs~-dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  231 (520)
                      .+++++.. -..+.+|.+..........--.+++.++.  ++|.+|+.|+..|.|++|.+.+|.             ...
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~-------------LL~  117 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGI-------------LLN  117 (476)
T ss_pred             hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEecccc-------------HHH
Confidence            46666644 45788999876655543333455677776  889999999899999999999984             444


Q ss_pred             EeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECC---------CCcEEEEee-eccCEEEEe----eCCCEEEEEc-C
Q 009993          232 RLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRA---------LLKCLKVLR-HSDWVYGLA----PHDTTVASTS-G  294 (520)
Q Consensus       232 ~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~---------~~~~~~~~~-~~~~v~~~~----~~~~~l~~~~-d  294 (520)
                      .+.+|-..|+|+.|  |+.+++|||.||.|.+|++.         +-+.++.+. |.-+|+.+.    .....+++++ |
T Consensus       118 v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D  197 (476)
T KOG0646|consen  118 VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASED  197 (476)
T ss_pred             HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCC
Confidence            56789999999999  88999999999999999863         234556665 888999987    2345778888 9


Q ss_pred             CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcc--c--------cceeeeeeecCCc
Q 009993          295 SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT--E--------ANVLLVATWIPHT  364 (520)
Q Consensus       295 ~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~--~--------~~~~~~~~~~~h~  364 (520)
                      .++++||+..+..+..+.  ....+.+++.+|.+..+++|+++|.|.+.++.....  .        .....+..+.+|.
T Consensus       198 ~t~k~wdlS~g~LLlti~--fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~  275 (476)
T KOG0646|consen  198 RTIKLWDLSLGVLLLTIT--FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHE  275 (476)
T ss_pred             ceEEEEEeccceeeEEEe--cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecccc
Confidence            999999999999998885  678899999999999999999999999998865431  1        1224566788998


Q ss_pred             C--CEEEEEe--cCCEEEEEeCCCcEEEEeCCccccc
Q 009993          365 G--PVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRS  397 (520)
Q Consensus       365 ~--~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~  397 (520)
                      +  .|+|++.  ++..|++|+.||.|.|||+.+.+..
T Consensus       276 ~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~i  312 (476)
T KOG0646|consen  276 NESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCI  312 (476)
T ss_pred             CCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHH
Confidence            8  9999998  5789999999999999999885443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=3e-21  Score=182.92  Aligned_cols=326  Identities=21%  Similarity=0.268  Sum_probs=232.4

Q ss_pred             hhhhcccc-ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009993          135 IDVLYGHT-EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA  211 (520)
Q Consensus       135 ~~~l~~h~-~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~  211 (520)
                      ..++.|+. ..|-+++|++ +..|++.+.+|.|.-||+.+++.+..+...+..|.+++  |.+..++.|+.||.+...+.
T Consensus        61 ~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~  139 (691)
T KOG2048|consen   61 EPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSI  139 (691)
T ss_pred             eEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEec
Confidence            44566664 6899999995 55688899999999999999999999999999998877  88899999999997777766


Q ss_pred             ccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee---------eccCEE
Q 009993          212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---------HSDWVY  280 (520)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---------~~~~v~  280 (520)
                      ..+.           ......+...++.|.+++|  ++..+++|+.||.|++||..++..+....         .+.-|+
T Consensus       140 ~p~~-----------I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW  208 (691)
T KOG2048|consen  140 GPDK-----------ITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW  208 (691)
T ss_pred             CCce-----------EEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEE
Confidence            5543           1223344456799999999  45668999999999999999998877332         122355


Q ss_pred             EEe-eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeee
Q 009993          281 GLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA  358 (520)
Q Consensus       281 ~~~-~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~  358 (520)
                      ++. -....+++|. .|+|.+||...+..+..+. .|...|.+++..++++++++++.|+.|.-|...+....  .....
T Consensus       209 Sv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~-~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~--wv~~~  285 (691)
T KOG2048|consen  209 SVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHS-CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE--WVINS  285 (691)
T ss_pred             EEEEeecCcEEEecCCceEEEEcccCcchhhhhh-hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc--eeeec
Confidence            555 5666777777 8999999999999999887 59999999999999999999999999999988777432  23444


Q ss_pred             eecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEE
Q 009993          359 TWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVC  438 (520)
Q Consensus       359 ~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s  438 (520)
                      ....|...|.+++.-+..+++|+.|..+.+-..+......               ..+.....+ ..+..+++. ++|..
T Consensus       286 ~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~---------------h~~~~~~p~-~~~v~~a~~-~~L~~  348 (691)
T KOG2048|consen  286 RRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMD---------------HRQKNLFPA-SDRVSVAPE-NRLLV  348 (691)
T ss_pred             cccCCcccceeeeeecceEEecceeeEEEEccccccCchh---------------hhccccccc-cceeecCcc-ceEEE
Confidence            5567888999999999999999999999887665421110               001111111 112222222 23333


Q ss_pred             ecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccccccc
Q 009993          439 GGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSV  493 (520)
Q Consensus       439 g~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~  493 (520)
                      -=.+..+.+|.+.+...-.+. +...-..+.-...+.....+.||+|..|+...+
T Consensus       349 ~w~~h~v~lwrlGS~~~~g~~-~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~  402 (691)
T KOG2048|consen  349 LWKAHGVDLWRLGSVILQGEY-NYIHLLKLFTKEKENISCAAISPDGNLIAISTV  402 (691)
T ss_pred             EeccccccceeccCccccccc-ChhhheeeecCCccceeeeccCCCCCEEEEeec
Confidence            333455667776654221100 011111122333456788899999999988663

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=3e-21  Score=165.28  Aligned_cols=279  Identities=19%  Similarity=0.290  Sum_probs=195.2

Q ss_pred             hccccccEEEEEEcc-CCCEEEEEeCCCeEEEEECCCCcE----------EEE-----eCCCCceEEEEe---cCCCEEE
Q 009993          138 LYGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDGFS----------IAS-----SKPLGCTIRAVA---ADKKLLV  198 (520)
Q Consensus       138 l~~h~~~V~~l~~~~-~~~~l~sgs~dg~v~vwd~~~~~~----------~~~-----~~~~~~~v~~~~---~~~~~l~  198 (520)
                      .+-|.+.|.++...+ .|+++++|+.||.|.|||+++...          +..     -.+|.-.|..+.   .|...+.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            457899999999987 589999999999999999975421          110     124555555544   5777889


Q ss_pred             EEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-----cCCEEEEEecCCeEEEEECCCCcEEEEe
Q 009993          199 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-----DLTRIYSGSWDMTVRVWDRALLKCLKVL  273 (520)
Q Consensus       199 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-----~~~~l~s~s~dg~v~iwd~~~~~~~~~~  273 (520)
                      +++.|.+++|||..+...              .......+.|.+-++     .-.++++|..|-.|++-|+.+|.+.+++
T Consensus       119 ssSFDhtlKVWDtnTlQ~--------------a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L  184 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQE--------------AVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL  184 (397)
T ss_pred             cccccceEEEeeccccee--------------eEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee
Confidence            999999999999877531              111223445555555     3356888889999999999999999999


Q ss_pred             e-eccCEEEEe--eCCC-EEEEEc-CCeEEEEECCCC-eeeEEe-------------ecccccceEEEEecCCCCEEEEE
Q 009993          274 R-HSDWVYGLA--PHDT-TVASTS-GSDVYIWDTNSG-CLLTVV-------------NGAHVGNTKSLARSHTGDFLFTG  334 (520)
Q Consensus       274 ~-~~~~v~~~~--~~~~-~l~~~~-d~~i~iwd~~~~-~~~~~~-------------~~~~~~~i~~l~~s~~~~~l~tg  334 (520)
                      . |.+.|.++.  |... .|++|+ ||.|++||++.. .+...+             ..+|.+.++.++|+.++.+++++
T Consensus       185 sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~  264 (397)
T KOG4283|consen  185 SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASC  264 (397)
T ss_pred             ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhc
Confidence            8 999999998  4444 466677 999999999864 222211             23688899999999999999999


Q ss_pred             eCCCeEEEEEcccCccccc-e-eeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeec
Q 009993          335 GEDGAIHMYEIINDCTEAN-V-LLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEV  412 (520)
Q Consensus       335 ~~dg~i~iwd~~~~~~~~~-~-~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  412 (520)
                      +.|..+++|+...+..... . +....-..|. .+.--..+...++---.++.+.++++-.                   
T Consensus       265 gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~-~~~~~~~~s~vfv~~p~~~~lall~~~s-------------------  324 (397)
T KOG4283|consen  265 GTDDRIRVWNMESGRNTLREFGPIIHNQTTSF-AVHIQSMDSDVFVLFPNDGSLALLNLLE-------------------  324 (397)
T ss_pred             cCccceEEeecccCcccccccccccccccccc-eEEEeecccceEEEEecCCeEEEEEccC-------------------
Confidence            9999999999988743110 0 0000000010 1110011233444444557777777765                   


Q ss_pred             CCCcccccCcceeeEEEEecCC--EEEEecCCCeEEEEeC
Q 009993          413 EPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNF  450 (520)
Q Consensus       413 ~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~  450 (520)
                      ....+.+.+|...+.|..+.++  ...+|+.|+.|..|-.
T Consensus       325 gs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  325 GSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             ceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence            2334455666667777777776  8999999999999986

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=4.9e-21  Score=165.00  Aligned_cols=257  Identities=16%  Similarity=0.213  Sum_probs=183.1

Q ss_pred             CCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE----cCCEEEEEec
Q 009993          182 PLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSW  255 (520)
Q Consensus       182 ~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~  255 (520)
                      +|..-|.+++  +.|+.+++|+.|++|+|||.....         ...........|.+.|..+.|    -|+.+++++.
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s---------~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~   81 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS---------GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY   81 (361)
T ss_pred             CCcceeeeeeecccCceeeeccCCCcEEEEeccCCC---------CceEEeeeEEecCCcEEEEEecCccccceEEEEec
Confidence            5667777766  789999999999999999975442         335566777889999999999    4577999999


Q ss_pred             CCeEEEEECCC---------CcEEEEee-eccCEEEEe----eCCCEEEEEc-CCeEEEEECCCCeeeEE------ee--
Q 009993          256 DMTVRVWDRAL---------LKCLKVLR-HSDWVYGLA----PHDTTVASTS-GSDVYIWDTNSGCLLTV------VN--  312 (520)
Q Consensus       256 dg~v~iwd~~~---------~~~~~~~~-~~~~v~~~~----~~~~~l~~~~-d~~i~iwd~~~~~~~~~------~~--  312 (520)
                      |+++.||.-..         .....++. ....|+.+.    ..|-.+++++ ||.++||+....-.+..      +.  
T Consensus        82 Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~  161 (361)
T KOG2445|consen   82 DRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV  161 (361)
T ss_pred             CCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc
Confidence            99999997521         11222333 567788777    3467788888 99999998765322221      11  


Q ss_pred             ----cccccceEEEEecCC---CCEEEEEeCC-----CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC------
Q 009993          313 ----GAHVGNTKSLARSHT---GDFLFTGGED-----GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF------  374 (520)
Q Consensus       313 ----~~~~~~i~~l~~s~~---~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~------  374 (520)
                          ..+..+..|+.|+|.   ..+|++|+.+     +.++||......  .....+.++.+|..+|++|+|.|      
T Consensus       162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~--rKw~kva~L~d~~dpI~di~wAPn~Gr~y  239 (361)
T KOG2445|consen  162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG--RKWLKVAELPDHTDPIRDISWAPNIGRSY  239 (361)
T ss_pred             cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc--ceeeeehhcCCCCCcceeeeeccccCCce
Confidence                235567789999873   4578888776     578999876663  23356777889999999999987      


Q ss_pred             CEEEEEeCCCcEEEEeCCcccccCC---CCCCCceeeeeecCCCcccccCcceeeEEEEec--CCEEEEecCCCeEEEEe
Q 009993          375 PWLVSAAGDGKLSLIDVRKLLRSGR---PTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVRIWN  449 (520)
Q Consensus       375 ~~l~s~s~dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd  449 (520)
                      ..|++++.|| |+||.+........   .........+  .-.....+.+|.+.|+.+.++  |..|++.|.||+||+|.
T Consensus       240 ~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l--~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  240 HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDL--PVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK  316 (361)
T ss_pred             eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCcccc--ceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence            4899999999 99999985321110   0000000000  011233467899999988876  56999999999999998


Q ss_pred             CCc
Q 009993          450 FSQ  452 (520)
Q Consensus       450 ~~~  452 (520)
                      ..-
T Consensus       317 any  319 (361)
T KOG2445|consen  317 ANY  319 (361)
T ss_pred             hhh
Confidence            653

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=6.1e-22  Score=186.16  Aligned_cols=256  Identities=15%  Similarity=0.183  Sum_probs=185.2

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEE--eCCCCceEEEEe---cCCCEEEEEeCCCcEEEE
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIAS--SKPLGCTIRAVA---ADKKLLVAGGTDGFIHCW  209 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~--~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vw  209 (520)
                      +.....|..+|..+.|.|....|++++.|.++++||+.+++.+..  +.+|...+.+++   .+...+++|+.||.|.||
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW  172 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW  172 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence            445668999999999999778999999999999999999988876  889999887665   567789999999999999


Q ss_pred             EcccCccee--------eeccCC------ccccceEEeccCCC----CeEEEEE-cCCEEEEEec-CCeEEEEECCCCcE
Q 009993          210 RAVEVLPHL--------FDISGS------EKQNTQFRLWEHEG----PITSLAL-DLTRIYSGSW-DMTVRVWDRALLKC  269 (520)
Q Consensus       210 d~~~~~~~~--------~~~~~~------~~~~~~~~~~~h~~----~v~~l~~-~~~~l~s~s~-dg~v~iwd~~~~~~  269 (520)
                      |++......        +.....      ........-..+..    .|+.+.| |...|++++. |+.|+|||++....
T Consensus       173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~  252 (720)
T KOG0321|consen  173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT  252 (720)
T ss_pred             EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence            986543211        100000      00011112223333    4556777 8899999988 99999999987655


Q ss_pred             EEEee---------e---ccCEEEEe--eCCCEEEE-EcCCeEEEEECCCCe--eeEEeeccccc--ceEEEEecCCCCE
Q 009993          270 LKVLR---------H---SDWVYGLA--PHDTTVAS-TSGSDVYIWDTNSGC--LLTVVNGAHVG--NTKSLARSHTGDF  330 (520)
Q Consensus       270 ~~~~~---------~---~~~v~~~~--~~~~~l~~-~~d~~i~iwd~~~~~--~~~~~~~~~~~--~i~~l~~s~~~~~  330 (520)
                      .....         +   ...+.++.  ..|.++++ |.|+.|+.||+.+-.  ++..+. ++..  .-..-..+|++.+
T Consensus       253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s-g~~~~sf~vks~lSpd~~~  331 (720)
T KOG0321|consen  253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS-GKLNSSFYVKSELSPDDCS  331 (720)
T ss_pred             ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc-CcccceeeeeeecCCCCce
Confidence            44332         2   12344444  44565555 449999999998643  333332 2221  1123356899999


Q ss_pred             EEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccc
Q 009993          331 LFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLR  396 (520)
Q Consensus       331 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~  396 (520)
                      +++|+.|...++|.+.+..     .....+.+|.-.|++++|.|   .-++++++|..+++|++..+..
T Consensus       332 l~SgSsd~~ayiw~vs~~e-----~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~  395 (720)
T KOG0321|consen  332 LLSGSSDEQAYIWVVSSPE-----APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLE  395 (720)
T ss_pred             EeccCCCcceeeeeecCcc-----CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchh
Confidence            9999999999999999885     45666789999999999976   4678889999999999976543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=6.9e-21  Score=164.76  Aligned_cols=289  Identities=17%  Similarity=0.178  Sum_probs=195.1

Q ss_pred             EEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cC-CEEEE
Q 009993          178 ASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DL-TRIYS  252 (520)
Q Consensus       178 ~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~s  252 (520)
                      ..+++|...|++++  .||++|++++.|++|++|++++-...       +.......+  .-+..+.+.|  |- ..+++
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~-------eHr~~R~nv--e~dhpT~V~FapDc~s~vv~  150 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENK-------EHRCIRQNV--EYDHPTRVVFAPDCKSVVVS  150 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhh-------hhhHhhccc--cCCCceEEEECCCcceEEEE
Confidence            35678888877655  89999999999999999998763211       000011111  1224456677  22 44666


Q ss_pred             EecCCeEEEEECCCC---cEEEE--------ee--eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccc
Q 009993          253 GSWDMTVRVWDRALL---KCLKV--------LR--HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHV  316 (520)
Q Consensus       253 ~s~dg~v~iwd~~~~---~~~~~--------~~--~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~  316 (520)
                      +-...++++|-+...   .....        +.  |...+..+-  ..+.++++++ |.+|.+|+++ |+.+..+.. ..
T Consensus       151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt-nq  228 (420)
T KOG2096|consen  151 VKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT-NQ  228 (420)
T ss_pred             EccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc-cc
Confidence            666678999876422   11111        11  444444443  6788999999 9999999999 888888863 55


Q ss_pred             cceEEEEecCCCCEEEEEeCCCeEEEEEcccCc--cccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCC
Q 009993          317 GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC--TEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       317 ~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~  392 (520)
                      ..-+..+.+|+|+++++++..-.|++|.+--..  .-.+...+..+.+|...|..++|++  ..+++.+.||+++|||..
T Consensus       229 ~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  229 SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             ccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            666778899999999999999999999974332  1233456778999999999999976  699999999999999987


Q ss_pred             cccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhh
Q 009993          393 KLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRM  472 (520)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  472 (520)
                      -......-.     . +....+......+...--++++|+++.|+.... ..++++..+++.....+.....+       
T Consensus       309 VrY~~~qDp-----k-~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~-------  374 (420)
T KOG2096|consen  309 VRYEAGQDP-----K-ILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHST-------  374 (420)
T ss_pred             ceEecCCCc-----h-HhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcC-------
Confidence            432221100     0 000010000111222235677788887666553 56999999998877765555433       


Q ss_pred             hhccceeeeccCCCccccccc
Q 009993          473 RRRKLQTEMSSKGGRTDQCSV  493 (520)
Q Consensus       473 ~~~~~~~~~s~~g~~~~~~s~  493 (520)
                        .+..++|+++|+++++|.-
T Consensus       375 --~Is~is~~~~g~~~atcGd  393 (420)
T KOG2096|consen  375 --TISSISYSSDGKYIATCGD  393 (420)
T ss_pred             --ceeeEEecCCCcEEeeecc
Confidence              4789999999999999873

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=1.1e-21  Score=190.91  Aligned_cols=200  Identities=20%  Similarity=0.303  Sum_probs=164.7

Q ss_pred             HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe---cCCCEEEEEeCCCcEEEE
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCW  209 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vw  209 (520)
                      +.++.|+||++.|..+.|+. .++|+++|.|.|||+|++...++++.|. |...|+|+.   .|.+++++|+.||.|+||
T Consensus       360 kP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiW  437 (712)
T KOG0283|consen  360 KPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLW  437 (712)
T ss_pred             cchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEe
Confidence            44889999999999999996 4589999999999999999999999886 888888887   578899999999999999


Q ss_pred             EcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee---e------ccC
Q 009993          210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---H------SDW  278 (520)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~------~~~  278 (520)
                      ++...              .+.....-..-|++++|  +|++.+.|+.+|.+++|++...+......   +      ...
T Consensus       438 sI~d~--------------~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~r  503 (712)
T KOG0283|consen  438 SISDK--------------KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKR  503 (712)
T ss_pred             ecCcC--------------eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCce
Confidence            98654              23333444588999999  99999999999999999998877665543   1      237


Q ss_pred             EEEEe--e-CC-CEEEEEcCCeEEEEECCCCeeeEEeeccccc-ceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993          279 VYGLA--P-HD-TTVASTSGSDVYIWDTNSGCLLTVVNGAHVG-NTKSLARSHTGDFLFTGGEDGAIHMYEIIND  348 (520)
Q Consensus       279 v~~~~--~-~~-~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~  348 (520)
                      |+++.  | +. +.|++..|..|+|||.++..++..+++.+.. .-....|+.||++|+++++|..|++|+....
T Consensus       504 ITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  504 ITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             eeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence            99988  2 22 3666666999999999998888888754433 2346679999999999999999999998554

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=4.9e-22  Score=165.69  Aligned_cols=252  Identities=20%  Similarity=0.214  Sum_probs=186.0

Q ss_pred             CCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-c---CCEEEEEec
Q 009993          182 PLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-D---LTRIYSGSW  255 (520)
Q Consensus       182 ~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~---~~~l~s~s~  255 (520)
                      .|...|....  .-|++|+|++.|++|+|+.++.+.          .......+.||.++|..++| +   |+.|++++.
T Consensus         9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~----------~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsY   78 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG----------QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSY   78 (299)
T ss_pred             hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC----------CceeeeEecCCCCCeeEEeecccccCcEeeEeec
Confidence            4666665544  668999999999999999987653          23567889999999999999 4   578999999


Q ss_pred             CCeEEEEECCCCcEEEEeeeccCEEEEeeCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCC--CCEEEE
Q 009993          256 DMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT--GDFLFT  333 (520)
Q Consensus       256 dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~--~~~l~t  333 (520)
                      ||.|.||.-.+++-.+                                    .... ..|...|++++|.|.  |-.|++
T Consensus        79 DgkVIiWke~~g~w~k------------------------------------~~e~-~~h~~SVNsV~wapheygl~Lac  121 (299)
T KOG1332|consen   79 DGKVIIWKEENGRWTK------------------------------------AYEH-AAHSASVNSVAWAPHEYGLLLAC  121 (299)
T ss_pred             CceEEEEecCCCchhh------------------------------------hhhh-hhhcccceeecccccccceEEEE
Confidence            9999999977663221                                    1112 258999999999885  458999


Q ss_pred             EeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC----------------CEEEEEeCCCcEEEEeCCccccc
Q 009993          334 GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF----------------PWLVSAAGDGKLSLIDVRKLLRS  397 (520)
Q Consensus       334 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----------------~~l~s~s~dg~i~vwd~~~~~~~  397 (520)
                      ++.||.|.|.+.+....-   ........|.-.|++++|.|                ..|++|+.|..|+||+..+..  
T Consensus       122 asSDG~vsvl~~~~~g~w---~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~--  196 (299)
T KOG1332|consen  122 ASSDGKVSVLTYDSSGGW---TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS--  196 (299)
T ss_pred             eeCCCcEEEEEEcCCCCc---cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc--
Confidence            999999999998876211   22334567999999999954                369999999999999998741  


Q ss_pred             CCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC------EEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchh
Q 009993          398 GRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD------RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENR  471 (520)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  471 (520)
                                     -...+.+.+|..-|..+++.+.      .||+++.||+|.||..+...+..+.       .+.+.
T Consensus       197 ---------------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~-------tll~~  254 (299)
T KOG1332|consen  197 ---------------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKK-------TLLEE  254 (299)
T ss_pred             ---------------hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccc-------ccccc
Confidence                           2233447899999988887764      8999999999999988743222111       11222


Q ss_pred             hhhccceeeeccCCCcccccccccccCCCCCCcceeeecccCCCCc
Q 009993          472 MRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSGK  517 (520)
Q Consensus       472 ~~~~~~~~~~s~~g~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  517 (520)
                      .......+.||..|..|+.+.        +-+...+|.-  ..+||
T Consensus       255 f~~~~w~vSWS~sGn~LaVs~--------GdNkvtlwke--~~~Gk  290 (299)
T KOG1332|consen  255 FPDVVWRVSWSLSGNILAVSG--------GDNKVTLWKE--NVDGK  290 (299)
T ss_pred             CCcceEEEEEeccccEEEEec--------CCcEEEEEEe--CCCCc
Confidence            333467889999999888765        3344577765  34444

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=6.6e-20  Score=173.54  Aligned_cols=264  Identities=14%  Similarity=0.056  Sum_probs=180.2

Q ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCc-eEEEEecCCCEE-EEEeCCCcEEEEEcccCcceeeeccCCccccceE
Q 009993          154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC-TIRAVAADKKLL-VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF  231 (520)
Q Consensus       154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  231 (520)
                      +.++++++.|+.|++||+.+++.+..+..+.. ...++++++..+ ++++.++.|++||..++.             ...
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~-------------~~~   67 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE-------------VIG   67 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCc-------------EEE
Confidence            35788999999999999999988888775543 335667888876 567788999999987753             122


Q ss_pred             EeccCCCCeEEEEE--cCCEEEE-EecCCeEEEEECCCCcEEEEeeeccCEEEE--eeCCCEEEEEc-C-CeEEEEECCC
Q 009993          232 RLWEHEGPITSLAL--DLTRIYS-GSWDMTVRVWDRALLKCLKVLRHSDWVYGL--APHDTTVASTS-G-SDVYIWDTNS  304 (520)
Q Consensus       232 ~~~~h~~~v~~l~~--~~~~l~s-~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-d-~~i~iwd~~~  304 (520)
                      .+..+.. +..+++  +++.+++ ++.|+.+++||+.+.+.+..+.....+.++  .+++..++++. + ..+.+||.++
T Consensus        68 ~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~  146 (300)
T TIGR03866        68 TLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT  146 (300)
T ss_pred             eccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCC
Confidence            2323322 455667  5666654 456899999999998888777644444444  48999998888 4 3577889998


Q ss_pred             CeeeEEeecccccceEEEEecCCCCEEEEE-eCCCeEEEEEcccCccccceeeeeeecCC-------cCCEEEEEecC--
Q 009993          305 GCLLTVVNGAHVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDCTEANVLLVATWIPH-------TGPVNSLAFEF--  374 (520)
Q Consensus       305 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~~--  374 (520)
                      ++......  ....+..++|+|++++++++ ..++.|++||+.++.      .+..+..+       ......+.|+|  
T Consensus       147 ~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~s~dg  218 (300)
T TIGR03866       147 YEIVDNVL--VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK------VIKKITFEIPGVHPEAVQPVGIKLTKDG  218 (300)
T ss_pred             CeEEEEEE--cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce------eeeeeeecccccccccCCccceEECCCC
Confidence            87766554  23356789999999988654 469999999999873      33332211       11234677765  


Q ss_pred             CEE-EEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEe-cCCCeEEEEeCCc
Q 009993          375 PWL-VSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCG-GEEGIVRIWNFSQ  452 (520)
Q Consensus       375 ~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg-~~Dg~v~iwd~~~  452 (520)
                      +++ ++.+.++.|.+||+.+.....                  ....++.....++++++++|+++ +.+|.|++||+.+
T Consensus       219 ~~~~~~~~~~~~i~v~d~~~~~~~~------------------~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~  280 (300)
T TIGR03866       219 KTAFVALGPANRVAVVDAKTYEVLD------------------YLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA  280 (300)
T ss_pred             CEEEEEcCCCCeEEEEECCCCcEEE------------------EEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            454 444567789999997642110                  01123333345566677787775 5699999999998


Q ss_pred             hHhHH
Q 009993          453 AFEIE  457 (520)
Q Consensus       453 ~~~~~  457 (520)
                      ++.+.
T Consensus       281 ~~~~~  285 (300)
T TIGR03866       281 LKVIK  285 (300)
T ss_pred             CcEEE
Confidence            75543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=3.3e-23  Score=197.18  Aligned_cols=216  Identities=24%  Similarity=0.396  Sum_probs=183.0

Q ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceE
Q 009993          154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF  231 (520)
Q Consensus       154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  231 (520)
                      ..++..+..+-.+++||...      +..|...+-++.  ..++.+++|+.|..+.+|.+...             ....
T Consensus         4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp-------------~~i~   64 (825)
T KOG0267|consen    4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP-------------NAIT   64 (825)
T ss_pred             ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCC-------------chhh
Confidence            44455666666788888653      334555555554  66788999999999999987543             2444


Q ss_pred             EeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCC
Q 009993          232 RLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSG  305 (520)
Q Consensus       232 ~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~  305 (520)
                      .+.+|..+|.++.|  +...|++|+.+|+|++||++..+.++++. |...+.++.  |.+.+.+.|+ |+.+.+||.+..
T Consensus        65 S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~  144 (825)
T KOG0267|consen   65 SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK  144 (825)
T ss_pred             eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc
Confidence            68899999999999  45779999999999999999999888886 777887777  7888888899 999999999988


Q ss_pred             eeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCC
Q 009993          306 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD  383 (520)
Q Consensus       306 ~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d  383 (520)
                      .+...+. +|...+..+.|+|+|++++.|++|..++|||...+      +....|..|.+.+.++.|+|  -.+++|+.|
T Consensus       145 Gc~~~~~-s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag------k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d  217 (825)
T KOG0267|consen  145 GCSHTYK-SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG------KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSD  217 (825)
T ss_pred             Cceeeec-CCcceeEEEeecCCCceeeccCCcceeeeeccccc------ccccccccccccccccccCchhhhhccCCCC
Confidence            8998887 49999999999999999999999999999999999      78899999999999999988  478899999


Q ss_pred             CcEEEEeCCccc
Q 009993          384 GKLSLIDVRKLL  395 (520)
Q Consensus       384 g~i~vwd~~~~~  395 (520)
                      ++|++||+++..
T Consensus       218 ~tv~f~dletfe  229 (825)
T KOG0267|consen  218 RTVRFWDLETFE  229 (825)
T ss_pred             ceeeeeccceeE
Confidence            999999999753

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=2.7e-22  Score=192.52  Aligned_cols=230  Identities=18%  Similarity=0.266  Sum_probs=186.0

Q ss_pred             EEEEcc-CCCEEEEEeCCCeEEEEECCC---CcEEEEeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCcceee
Q 009993          147 TVFVLA-SAKLLFTSGYDSIVRMWHLED---GFSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVLPHLF  219 (520)
Q Consensus       147 ~l~~~~-~~~~l~sgs~dg~v~vwd~~~---~~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~~~~  219 (520)
                      .|+|.. +.++|||++..|.|.+||+..   .+.+..|..|.-.+.++.   ...++|++|+.||+|++||++...    
T Consensus        92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~----  167 (839)
T KOG0269|consen   92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK----  167 (839)
T ss_pred             hcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc----
Confidence            445542 568999999999999999987   556667888988888776   567899999999999999997653    


Q ss_pred             eccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCC-cEEEEee-eccCEEEEe--eCCCEEEEE
Q 009993          220 DISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALL-KCLKVLR-HSDWVYGLA--PHDTTVAST  292 (520)
Q Consensus       220 ~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~-~~~~v~~~~--~~~~~l~~~  292 (520)
                               ....+.+....|+++.|   .+++++++...|.+++||++.. ++...+. |.++|.|+.  |++.+||+|
T Consensus       168 ---------S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATG  238 (839)
T KOG0269|consen  168 ---------SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATG  238 (839)
T ss_pred             ---------ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeec
Confidence                     44456667889999999   6688999999999999999865 3444454 999999998  999999999


Q ss_pred             c-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCC-EEEEEeC--CCeEEEEEcccCccccceeeeeeecCCcCCEE
Q 009993          293 S-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD-FLFTGGE--DGAIHMYEIINDCTEANVLLVATWIPHTGPVN  368 (520)
Q Consensus       293 ~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l~tg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~  368 (520)
                      + |+.|+|||..+++......-....++.++.|-|... .|++++.  |-.|+|||++.+-     .+..++..|+..++
T Consensus       239 GRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY-----IP~~t~~eH~~~vt  313 (839)
T KOG0269|consen  239 GRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY-----IPYATFLEHTDSVT  313 (839)
T ss_pred             CCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccc-----ccceeeeccCcccc
Confidence            9 999999999876543332222567899999999765 4666554  7789999998874     67888999999999


Q ss_pred             EEEec---CCEEEEEeCCCcEEEEeCCcc
Q 009993          369 SLAFE---FPWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       369 ~l~~~---~~~l~s~s~dg~i~vwd~~~~  394 (520)
                      .++|.   +..+.+++.||+|..-.+++.
T Consensus       314 ~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  314 GIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             ceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            99994   468999999999877666543

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.88  E-value=4.4e-22  Score=181.94  Aligned_cols=251  Identities=20%  Similarity=0.290  Sum_probs=200.9

Q ss_pred             CCCCCCCCCcccHHH-------hhhhhc--cccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEE--EEeCC--CCc
Q 009993          119 APLGAGFSDDKSWKE-------LIDVLY--GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI--ASSKP--LGC  185 (520)
Q Consensus       119 ~~~~~~~~~~~~W~~-------~~~~l~--~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~--~~~~~--~~~  185 (520)
                      .....|..-.++|+-       .+..|.  ....-|.++.+.|||+.|++|++-.++.|||+......  ..+..  ..+
T Consensus       433 hVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaC  512 (705)
T KOG0639|consen  433 HVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC  512 (705)
T ss_pred             eeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhh
Confidence            344456667799981       122222  23567899999999999999999999999999765432  22332  344


Q ss_pred             eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEE
Q 009993          186 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWD  263 (520)
Q Consensus       186 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd  263 (520)
                      ...+++||.+..+++..||.|.|||+.+.             ..+..+.||.+.+.||.+  +|..|.+|+-|.+|+-||
T Consensus       513 yALa~spDakvcFsccsdGnI~vwDLhnq-------------~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWD  579 (705)
T KOG0639|consen  513 YALAISPDAKVCFSCCSDGNIAVWDLHNQ-------------TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWD  579 (705)
T ss_pred             hhhhcCCccceeeeeccCCcEEEEEcccc-------------eeeecccCCCCCceeEEecCCCceeecCCCccceeehh
Confidence            44556699999999999999999999663             477889999999999999  689999999999999999


Q ss_pred             CCCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeE
Q 009993          264 RALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI  340 (520)
Q Consensus       264 ~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i  340 (520)
                      +++++.+........|.++.  |.+.++++|- ++.+.+......+... +. -|.+.|.++.|.+.|+++++.+.|..+
T Consensus       580 lregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyq-lh-lheScVLSlKFa~cGkwfvStGkDnlL  657 (705)
T KOG0639|consen  580 LREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQ-LH-LHESCVLSLKFAYCGKWFVSTGKDNLL  657 (705)
T ss_pred             hhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcccee-ec-ccccEEEEEEecccCceeeecCchhhh
Confidence            99999888888889999987  9999999999 7888888766544433 32 489999999999999999999999999


Q ss_pred             EEEEcccCccccceeeeeeecCCcCCEEEEEe--cCCEEEEEeCCCcEEEEeC
Q 009993          341 HMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDV  391 (520)
Q Consensus       341 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~  391 (520)
                      ..|....+      ..+.... ..+.|.++..  +.++++||+.|....||.+
T Consensus       658 nawrtPyG------asiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  658 NAWRTPYG------ASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             hhccCccc------cceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            99998888      3333332 3456777665  5689999999998888875

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.88  E-value=2e-21  Score=178.33  Aligned_cols=260  Identities=15%  Similarity=0.149  Sum_probs=187.9

Q ss_pred             CCCCCCCCCcccHH--------Hhhhhh-ccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEE-----------
Q 009993          119 APLGAGFSDDKSWK--------ELIDVL-YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA-----------  178 (520)
Q Consensus       119 ~~~~~~~~~~~~W~--------~~~~~l-~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~-----------  178 (520)
                      +..++-+.+.+.|+        ...+.| ..-...|.+++|++.|..|++.+.....+|+|-...+...           
T Consensus       182 ~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm  261 (641)
T KOG0772|consen  182 FVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDM  261 (641)
T ss_pred             eeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhh
Confidence            33344466678998        223333 2344578999999999999999989999999965433222           


Q ss_pred             -EeCCCCceEEEEe--c-CCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEE
Q 009993          179 -SSKPLGCTIRAVA--A-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYS  252 (520)
Q Consensus       179 -~~~~~~~~v~~~~--~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s  252 (520)
                       ..++|...+++-+  | +...++|++.||++++||+........       ........+..-++++.+|  +++.|++
T Consensus       262 ~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q-------Vik~k~~~g~Rv~~tsC~~nrdg~~iAa  334 (641)
T KOG0772|consen  262 YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ-------VIKTKPAGGKRVPVTSCAWNRDGKLIAA  334 (641)
T ss_pred             hccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee-------EEeeccCCCcccCceeeecCCCcchhhh
Confidence             2367877777655  4 455899999999999999876532110       0011111234567888899  7889999


Q ss_pred             EecCCeEEEEECCCCcE--EEEee--ecc--CEEEEe--eCCCEEEEEc-CCeEEEEECCCCe-eeEEeec-ccccceEE
Q 009993          253 GSWDMTVRVWDRALLKC--LKVLR--HSD--WVYGLA--PHDTTVASTS-GSDVYIWDTNSGC-LLTVVNG-AHVGNTKS  321 (520)
Q Consensus       253 ~s~dg~v~iwd~~~~~~--~~~~~--~~~--~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~-~~~~~~~-~~~~~i~~  321 (520)
                      |+.||.|.+|+......  ...++  |..  .|+|+.  ++|++|++-+ |+++++||++..+ ++..... ....+-+.
T Consensus       335 gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~td  414 (641)
T KOG0772|consen  335 GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTD  414 (641)
T ss_pred             cccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCc
Confidence            99999999999754432  22222  655  788887  8999999988 9999999999764 3333321 12335578


Q ss_pred             EEecCCCCEEEEEeC------CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeC
Q 009993          322 LARSHTGDFLFTGGE------DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDV  391 (520)
Q Consensus       322 l~~s~~~~~l~tg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~  391 (520)
                      ++|||+.++|++|..      .|++.+||..+-      ..++.+.-....|..+.|+|  +.|+.|+.||.++||=-
T Consensus       415 c~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~------d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd  486 (641)
T KOG0772|consen  415 CCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL------DTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYD  486 (641)
T ss_pred             cccCCCceEEEecccccCCCCCceEEEEeccce------eeEEEecCCCceEEEEeecchhhheeeecCCCceEEEEC
Confidence            899999999999864      578999998887      56777766688899999999  68999999999998743

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=9.9e-20  Score=172.73  Aligned_cols=278  Identities=20%  Similarity=0.242  Sum_probs=215.4

Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC-cEEEEeCCCC-ceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcc
Q 009993          140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-FSIASSKPLG-CTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLP  216 (520)
Q Consensus       140 ~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~-~~~~~~~~~~-~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~  216 (520)
                      --..+|.+|||+.+.+.||.+-.||.|-+|++..+ -+...+.++. ..|-+++ .++..|++.+.+|.|.-||+.++. 
T Consensus        23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk-  101 (691)
T KOG2048|consen   23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLK-  101 (691)
T ss_pred             eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCc-
Confidence            34578999999999999999999999999999875 3344455543 3455555 368889999999999999998763 


Q ss_pred             eeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee---eccCEEEEe--eCCCEE
Q 009993          217 HLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA--PHDTTV  289 (520)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~--~~~~~l  289 (520)
                                  ....+....+.|.+++.  .+..++.|+.||.+..++...++......   ..+.|.+++  +++..+
T Consensus       102 ------------~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i  169 (691)
T KOG2048|consen  102 ------------QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKI  169 (691)
T ss_pred             ------------eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEE
Confidence                        45566677899999999  45789999999988888887776655443   668899998  777888


Q ss_pred             EEEc-CCeEEEEECCCCeeeEEee-------cccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec
Q 009993          290 ASTS-GSDVYIWDTNSGCLLTVVN-------GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI  361 (520)
Q Consensus       290 ~~~~-d~~i~iwd~~~~~~~~~~~-------~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~  361 (520)
                      ++|+ ||.|++||..++..+....       .+...-|+++.|-. ...|++|..-|+|.+||...+      ..+..+.
T Consensus       170 ~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~~g------TLiqS~~  242 (691)
T KOG2048|consen  170 AGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWDSIFG------TLIQSHS  242 (691)
T ss_pred             EecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEcccCc------chhhhhh
Confidence            9999 9999999999998776322       11233577888774 457899999999999999999      7888899


Q ss_pred             CCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEe
Q 009993          362 PHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCG  439 (520)
Q Consensus       362 ~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg  439 (520)
                      .|.+.|.+++.++  +++++++.|+.|.-+...+.....             +....+.+++|  .+.+++.-+..+++|
T Consensus       243 ~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~w-------------v~~~~r~~h~h--dvrs~av~~~~l~sg  307 (691)
T KOG2048|consen  243 CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEW-------------VINSRRDLHAH--DVRSMAVIENALISG  307 (691)
T ss_pred             hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccce-------------eeeccccCCcc--cceeeeeecceEEec
Confidence            9999999999964  799999999999999887642210             01122334444  455555556799999


Q ss_pred             cCCCeEEEEeCCc
Q 009993          440 GEEGIVRIWNFSQ  452 (520)
Q Consensus       440 ~~Dg~v~iwd~~~  452 (520)
                      |.|+++.+-....
T Consensus       308 G~d~~l~i~~s~~  320 (691)
T KOG2048|consen  308 GRDFTLAICSSRE  320 (691)
T ss_pred             ceeeEEEEccccc
Confidence            9999999876654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.88  E-value=5.1e-20  Score=174.94  Aligned_cols=304  Identities=23%  Similarity=0.345  Sum_probs=222.4

Q ss_pred             hhhhhccccccEEEEEEccCCC---EEEEEeCCCeEEEEECCCC--cEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEE
Q 009993          134 LIDVLYGHTEAVLTVFVLASAK---LLFTSGYDSIVRMWHLEDG--FSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHC  208 (520)
Q Consensus       134 ~~~~l~~h~~~V~~l~~~~~~~---~l~sgs~dg~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~v  208 (520)
                      ...++.||.++|+|+.|-|+.+   ++++|+.|+.|++|.++..  ..+.++++|...+.|+..........+.|+++.+
T Consensus        46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~v  125 (764)
T KOG1063|consen   46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSV  125 (764)
T ss_pred             eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEE
Confidence            4667899999999999999877   8999999999999999843  3566778888999998866555555588999999


Q ss_pred             EEcccCccee-----------------------------------eec--cCCccccceEEeccCCCCeEEEEE-----c
Q 009993          209 WRAVEVLPHL-----------------------------------FDI--SGSEKQNTQFRLWEHEGPITSLAL-----D  246 (520)
Q Consensus       209 wd~~~~~~~~-----------------------------------~~~--~~~~~~~~~~~~~~h~~~v~~l~~-----~  246 (520)
                      ||.+..+...                                   ..+  ....+......+.||.+.|.+++|     +
T Consensus       126 w~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~  205 (764)
T KOG1063|consen  126 WDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGD  205 (764)
T ss_pred             eecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCC
Confidence            9984443100                                   000  012234566778899999999999     2


Q ss_pred             CCEEEEEecCCeEEEEECCCCc---------------------EE---E-E------e-eeccCEEEEe--eCCCEEEEE
Q 009993          247 LTRIYSGSWDMTVRVWDRALLK---------------------CL---K-V------L-RHSDWVYGLA--PHDTTVAST  292 (520)
Q Consensus       247 ~~~l~s~s~dg~v~iwd~~~~~---------------------~~---~-~------~-~~~~~v~~~~--~~~~~l~~~  292 (520)
                      .-+|+++|.|..||+|.+.-+.                     ..   . .      + .|.++|+++.  |.+..|+++
T Consensus       206 ~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSA  285 (764)
T KOG1063|consen  206 DLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSA  285 (764)
T ss_pred             cEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheec
Confidence            3468999999999999764221                     11   1 0      1 2899999998  677677777


Q ss_pred             c-CCeEEEEECCCCeee--EEee----cccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcC
Q 009993          293 S-GSDVYIWDTNSGCLL--TVVN----GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG  365 (520)
Q Consensus       293 ~-d~~i~iwd~~~~~~~--~~~~----~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  365 (520)
                      + |.++.+|...+..-+  ....    .+..+......|+|+++.+++-+.-|..++|...+.   ..........||.+
T Consensus       286 SaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~---~~w~~~~~iSGH~~  362 (764)
T KOG1063|consen  286 SADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK---TFWTQEPVISGHVD  362 (764)
T ss_pred             ccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc---cceeeccccccccc
Confidence            7 999999988765221  1111    123456889999999999999999999999993332   22345556789999


Q ss_pred             CEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCC
Q 009993          366 PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEG  443 (520)
Q Consensus       366 ~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg  443 (520)
                      .|++++|+|  .+|++.|.|.+-|++-.-..+           ....++..|  ..|||...+.++-..+..+++|.+..
T Consensus       363 ~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q-----------~~wHEiaRP--QiHGyDl~c~~~vn~~~~FVSgAdEK  429 (764)
T KOG1063|consen  363 GVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQ-----------QEWHEIARP--QIHGYDLTCLSFVNEDLQFVSGADEK  429 (764)
T ss_pred             cceeeeecCCCCEEEEeccccceeeecccccc-----------cceeeeccc--ccccccceeeehccCCceeeecccce
Confidence            999999985  799999999999998665111           012222222  35677766666555555999999999


Q ss_pred             eEEEEeCCch
Q 009993          444 IVRIWNFSQA  453 (520)
Q Consensus       444 ~v~iwd~~~~  453 (520)
                      .+|+|+....
T Consensus       430 VlRvF~aPk~  439 (764)
T KOG1063|consen  430 VLRVFEAPKS  439 (764)
T ss_pred             eeeeecCcHH
Confidence            9999998754

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.88  E-value=1.1e-19  Score=166.46  Aligned_cols=316  Identities=15%  Similarity=0.161  Sum_probs=225.5

Q ss_pred             ccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEE---eCCC-CceEEEEe-cCCCEEEE
Q 009993          129 KSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIAS---SKPL-GCTIRAVA-ADKKLLVA  199 (520)
Q Consensus       129 ~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~---~~~~-~~~v~~~~-~~~~~l~s  199 (520)
                      ..|+    ......+.-.+.|....|+|.+.-|+.....+.+.+|+.+.+...+.   ++.+ ...|.|+. ..+.-+++
T Consensus       183 SVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT  262 (626)
T KOG2106|consen  183 SVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT  262 (626)
T ss_pred             chhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe
Confidence            4565    34444556678899999999765555445578899999998865544   3332 25666766 33345789


Q ss_pred             EeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee---e
Q 009993          200 GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR---H  275 (520)
Q Consensus       200 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~  275 (520)
                      |..+|.|.||+..+..             .......|.+.|.+++. ....|++|+.|..|..|| ..-+.++..+   .
T Consensus       263 gDS~G~i~Iw~~~~~~-------------~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd-~~y~k~r~~elPe~  328 (626)
T KOG2106|consen  263 GDSGGNILIWSKGTNR-------------ISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWD-DNYRKLRETELPEQ  328 (626)
T ss_pred             ecCCceEEEEeCCCce-------------EEeEeeecCCceEEEEEecCccEeecCccceEEecc-ccccccccccCchh
Confidence            9999999999975542             23333489999999999 556677799999999999 3333333333   6


Q ss_pred             ccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccce
Q 009993          276 SDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV  354 (520)
Q Consensus       276 ~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~  354 (520)
                      .++|..+.+.+.-+++|. .+.|..=.++++-.+..+  +|......++.+|+.+.++|++.|+.+++|+  ..      
T Consensus       329 ~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~--gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~------  398 (626)
T KOG2106|consen  329 FGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQ--GHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DH------  398 (626)
T ss_pred             cCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEE--ecccceeeEEcCCChhheeeccCcceEEEcc--CC------
Confidence            678888885444466666 677777777777666655  6989999999999999999999999999999  22      


Q ss_pred             eeeeeecCCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC
Q 009993          355 LLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA  433 (520)
Q Consensus       355 ~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  433 (520)
                      ++..+. --..++.|+.|+| ..++.|+..|...|.|.++.....                 .+ ..+...++..++++|
T Consensus       399 k~~wt~-~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~-----------------~~-~d~~~ls~v~ysp~G  459 (626)
T KOG2106|consen  399 KLEWTK-IIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVT-----------------IH-TDNEQLSVVRYSPDG  459 (626)
T ss_pred             ceeEEE-EecCceeEeeccCcceEEEeeccceEEEEecccceeEE-----------------EE-ecCCceEEEEEcCCC
Confidence            222221 2246889999987 699999999999999998731110                 00 113335677777888


Q ss_pred             CEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccccccccc
Q 009993          434 DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAA  495 (520)
Q Consensus       434 ~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~~  495 (520)
                      .+||.|+.|+.|+||.++.....-......++        ...+.+.||+|+..+.+-|.++
T Consensus       460 ~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g--------s~ithLDwS~Ds~~~~~~S~d~  513 (626)
T KOG2106|consen  460 AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG--------SPITHLDWSSDSQFLVSNSGDY  513 (626)
T ss_pred             CEEEEecCCCeEEEEEECCCCcEEEEeeeecC--------ceeEEeeecCCCceEEeccCce
Confidence            89999999999999999865432221111111        4468899999999999877654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.87  E-value=9.2e-21  Score=167.61  Aligned_cols=250  Identities=18%  Similarity=0.294  Sum_probs=180.3

Q ss_pred             CCCEEEEEeCCCcEEEEEcccCcceeeecc---CCccccceEEeccCCCCeEEEEEcC---CEEEEEecCCeEEEEECCC
Q 009993          193 DKKLLVAGGTDGFIHCWRAVEVLPHLFDIS---GSEKQNTQFRLWEHEGPITSLALDL---TRIYSGSWDMTVRVWDRAL  266 (520)
Q Consensus       193 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~v~iwd~~~  266 (520)
                      +..+.++=+..|.|+||++......+-...   ......+++++.+|.+.=..|+|.+   ..|++|.--+.|++|...+
T Consensus       164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~  243 (440)
T KOG0302|consen  164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST  243 (440)
T ss_pred             CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeecc
Confidence            455667778889999999865432221111   1134567889999999999999955   5688888888999999888


Q ss_pred             CcEEEE----eeeccCEEEEee---CCCEEEEEc-CCeEEEEECCCC---eeeEEeecccccceEEEEecCCCCEEEEEe
Q 009993          267 LKCLKV----LRHSDWVYGLAP---HDTTVASTS-GSDVYIWDTNSG---CLLTVVNGAHVGNTKSLARSHTGDFLFTGG  335 (520)
Q Consensus       267 ~~~~~~----~~~~~~v~~~~~---~~~~l~~~~-d~~i~iwd~~~~---~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~  335 (520)
                      +.-..-    ..|...|-.+..   ....|++|+ ||+|+|||++.+   .++.+  .+|.+.|+.+.|+.+..+|++|+
T Consensus       244 g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~--kAh~sDVNVISWnr~~~lLasG~  321 (440)
T KOG0302|consen  244 GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST--KAHNSDVNVISWNRREPLLASGG  321 (440)
T ss_pred             CceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe--eccCCceeeEEccCCcceeeecC
Confidence            653322    228888888873   567888888 999999999998   33333  47999999999999888999999


Q ss_pred             CCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeec
Q 009993          336 EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEV  412 (520)
Q Consensus       336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  412 (520)
                      .||+++|||++.-+..   .++..+.-|..+|++|.|+|   ..|++++.|..|.+||+.-......... .....+..+
T Consensus       322 DdGt~~iwDLR~~~~~---~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~-~a~~~L~dl  397 (440)
T KOG0302|consen  322 DDGTLSIWDLRQFKSG---QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQ-EAAEGLQDL  397 (440)
T ss_pred             CCceEEEEEhhhccCC---CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhcc-ccccchhcC
Confidence            9999999999987543   67889999999999999987   6899999999999999975322110000 000011222


Q ss_pred             CCCcccccCcceeeEEEEecCC---EEEEecCCCeEEEEe
Q 009993          413 EPPQRMLHGFECNLLSVDIGAD---RIVCGGEEGIVRIWN  449 (520)
Q Consensus       413 ~~~~~~~~~~~~~v~~~~~~~~---~l~sg~~Dg~v~iwd  449 (520)
                      .+.....+.....+-.++|+..   ++++.+.|| +.||.
T Consensus       398 PpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  398 PPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             CceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence            2223333333344556666654   999999999 45553

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=1.2e-20  Score=170.38  Aligned_cols=223  Identities=17%  Similarity=0.183  Sum_probs=169.6

Q ss_pred             CCEEEEEeCCCeEEEEECCCCcEE---E------------------EeCCCCceEEEEec---CCCEEEEEeCCCcEEEE
Q 009993          154 AKLLFTSGYDSIVRMWHLEDGFSI---A------------------SSKPLGCTIRAVAA---DKKLLVAGGTDGFIHCW  209 (520)
Q Consensus       154 ~~~l~sgs~dg~v~vwd~~~~~~~---~------------------~~~~~~~~v~~~~~---~~~~l~sg~~dg~i~vw  209 (520)
                      |+++|.|+.|..|.|||+.--..+   .                  .-.+|+..|.+++.   ..+.||+||.|.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            689999999999999998522110   0                  12357777777773   45689999999999999


Q ss_pred             EcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCc-EEEEeeeccCEEEEe--
Q 009993          210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLK-CLKVLRHSDWVYGLA--  283 (520)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~~~v~~~~--  283 (520)
                      |+.++.             +...+..|.+.|.++.|   .+..|++|+.|++|.+.|.+... .-..++..+.|-.+.  
T Consensus       272 D~~~g~-------------p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~  338 (463)
T KOG0270|consen  272 DVDTGK-------------PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWD  338 (463)
T ss_pred             EcCCCC-------------cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEec
Confidence            999874             55567789999999999   56899999999999999998532 223344666677666  


Q ss_pred             -eCCCEEEEEc-CCeEEEEECCCC-eeeEEeecccccceEEEEecCC-CCEEEEEeCCCeEEEEEcccCccccceeeeee
Q 009993          284 -PHDTTVASTS-GSDVYIWDTNSG-CLLTVVNGAHVGNTKSLARSHT-GDFLFTGGEDGAIHMYEIINDCTEANVLLVAT  359 (520)
Q Consensus       284 -~~~~~l~~~~-d~~i~iwd~~~~-~~~~~~~~~~~~~i~~l~~s~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~  359 (520)
                       .....++++. ||+|+-+|++.. +++.++. +|.++|.++++++. ..+++|++.|+.|++|++.....    ..+..
T Consensus       339 ~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~----~~v~~  413 (463)
T KOG0270|consen  339 PHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP----KSVKE  413 (463)
T ss_pred             CCCceeEEEecCCceEEeeecCCCCCceeEEE-eccCCcceEEecCCCCcceeeccccceEEEEeecCCCC----ccccc
Confidence             3345566666 899999999986 8888887 79999999999874 45788999999999999977632    11221


Q ss_pred             ecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcc
Q 009993          360 WIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       360 ~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~  394 (520)
                      ..-.-+...|.+++|   ..++.|+..+.++|||+.+.
T Consensus       414 ~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  414 HSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             ccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence            111123356666665   58899999999999999875

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=2.2e-22  Score=191.63  Aligned_cols=227  Identities=27%  Similarity=0.362  Sum_probs=198.2

Q ss_pred             hhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEccc
Q 009993          136 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVE  213 (520)
Q Consensus       136 ~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~  213 (520)
                      +.+..|...|.|+..-..++.+++|+.|..+-+|.+..-..+..+.+|..+|-++.  ++..+|++|+.+|+|++||+++
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee  101 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE  101 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence            44567899999999877889999999999999999988888888999999998887  6778999999999999999987


Q ss_pred             CcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCE
Q 009993          214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTT  288 (520)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~  288 (520)
                      +.             .+.++.+|...+.++.|++  .+.++|+.|+.+++||.+...|.+.+. |...|..+.  |+|++
T Consensus       102 Ak-------------~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~  168 (825)
T KOG0267|consen  102 AK-------------IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRW  168 (825)
T ss_pred             hh-------------hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCce
Confidence            53             5668899999999999954  778899999999999999889999887 666666654  99999


Q ss_pred             EEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCE
Q 009993          289 VASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPV  367 (520)
Q Consensus       289 l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v  367 (520)
                      ++.++ |..++|||...|+....|. .|.+.+.++.|+|..-++++|+.|+++++||+++.      ..+.........|
T Consensus       169 v~~g~ed~tvki~d~~agk~~~ef~-~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf------e~I~s~~~~~~~v  241 (825)
T KOG0267|consen  169 VASGGEDNTVKIWDLTAGKLSKEFK-SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF------EVISSGKPETDGV  241 (825)
T ss_pred             eeccCCcceeeeecccccccccccc-cccccccccccCchhhhhccCCCCceeeeecccee------EEeeccCCccCCc
Confidence            99999 7999999999999999998 59999999999999999999999999999999988      5666666778899


Q ss_pred             EEEEecCC--EEEEEeC
Q 009993          368 NSLAFEFP--WLVSAAG  382 (520)
Q Consensus       368 ~~l~~~~~--~l~s~s~  382 (520)
                      .++.|++.  .+++|..
T Consensus       242 ~~~~fn~~~~~~~~G~q  258 (825)
T KOG0267|consen  242 RSLAFNPDGKIVLSGEQ  258 (825)
T ss_pred             eeeeecCCceeeecCch
Confidence            99999873  4444433

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=8.2e-20  Score=178.97  Aligned_cols=263  Identities=14%  Similarity=0.135  Sum_probs=197.8

Q ss_pred             eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECC
Q 009993          186 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRA  265 (520)
Q Consensus       186 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~  265 (520)
                      .-.++.++|..|++++.||.|++|+.....            .....+..+...|.+++...++|++|+.+++|.+|.+.
T Consensus        17 t~i~~d~~gefi~tcgsdg~ir~~~~~sd~------------e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fp   84 (933)
T KOG1274|consen   17 TLICYDPDGEFICTCGSDGDIRKWKTNSDE------------EEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFP   84 (933)
T ss_pred             EEEEEcCCCCEEEEecCCCceEEeecCCcc------------cCCchhhccCceeEEEeecccceEEeeccceEEEeeCC
Confidence            345667999999999999999999865431            11122223788999999999999999999999999998


Q ss_pred             CCcEEEE---eeeccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEE
Q 009993          266 LLKCLKV---LRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIH  341 (520)
Q Consensus       266 ~~~~~~~---~~~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~  341 (520)
                      +++.-..   +..+-.+.++..+|++++.|+ |-.|++.+.........+. +|.++|.++.|+|++++||+.+-||.|+
T Consensus        85 s~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p~~~fLAvss~dG~v~  163 (933)
T KOG1274|consen   85 SGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDPKGNFLAVSSCDGKVQ  163 (933)
T ss_pred             CCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeEcCCCCEEEEEecCceEE
Confidence            8765433   335555566668889999999 7889999999998888887 7999999999999999999999999999


Q ss_pred             EEEcccCccccceeeeeeecC--CcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcc
Q 009993          342 MYEIINDCTEANVLLVATWIP--HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQR  417 (520)
Q Consensus       342 iwd~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (520)
                      +||+.++........+..-..  ....+..++|+|  ..++..+.|+.|++|+..+....+.....              
T Consensus       164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~--------------  229 (933)
T KOG1274|consen  164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK--------------  229 (933)
T ss_pred             EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc--------------
Confidence            999998833211111111111  144677889988  48888899999999999987544432221              


Q ss_pred             cccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccc
Q 009993          418 MLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQ  490 (520)
Q Consensus       418 ~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~  490 (520)
                       .......+..++|.|.|||+++.||.|-|||+++-.   +           ...++.+...+|.|++..+-.
T Consensus       230 -~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~---~-----------~~~~~~Vc~~aw~p~~n~it~  287 (933)
T KOG1274|consen  230 -LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE---R-----------HEFKRAVCCEAWKPNANAITL  287 (933)
T ss_pred             -ccccceEEEEEcCCCcEEeeeccCCcEEEEecccch---h-----------ccccceeEEEecCCCCCeeEE
Confidence             111225677888888899999999999999999711   1           122345677888888776543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=6.6e-20  Score=159.48  Aligned_cols=294  Identities=18%  Similarity=0.220  Sum_probs=207.5

Q ss_pred             ccHHHhhhhhccccccEEEEEEcc----C-CCEEEEEeCCCeEEEEECCCCcEEE---EeC--CCCceEEEE--e---c-
Q 009993          129 KSWKELIDVLYGHTEAVLTVFVLA----S-AKLLFTSGYDSIVRMWHLEDGFSIA---SSK--PLGCTIRAV--A---A-  192 (520)
Q Consensus       129 ~~W~~~~~~l~~h~~~V~~l~~~~----~-~~~l~sgs~dg~v~vwd~~~~~~~~---~~~--~~~~~v~~~--~---~-  192 (520)
                      +..+-..+..++|+.+|..++|++    + -..++|++ ...+.+|.......+.   .+.  .|......+  +   . 
T Consensus        25 ~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~  103 (385)
T KOG1034|consen   25 RSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNT  103 (385)
T ss_pred             cceEeeeehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCC
Confidence            344445667789999999999984    2 24555555 4568888876443222   222  233333322  2   2 


Q ss_pred             CCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcE
Q 009993          193 DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKC  269 (520)
Q Consensus       193 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~  269 (520)
                      .+.++|+|+.-|.|+|.|+.++.             ....+.+|...|+.+.+   ++++++++|.|.+|++||+++..|
T Consensus       104 ~~p~la~~G~~GvIrVid~~~~~-------------~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C  170 (385)
T KOG1034|consen  104 GNPFLAAGGYLGVIRVIDVVSGQ-------------CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC  170 (385)
T ss_pred             CCeeEEeecceeEEEEEecchhh-------------hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE
Confidence            25588899999999999987753             56678899999999999   557999999999999999999999


Q ss_pred             EEEee----eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEee---------------------------ccc
Q 009993          270 LKVLR----HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVN---------------------------GAH  315 (520)
Q Consensus       270 ~~~~~----~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~---------------------------~~~  315 (520)
                      +..+.    |.+.|.++.  .++.++++++ |.++.+|++...+....++                           .-|
T Consensus       171 v~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH  250 (385)
T KOG1034|consen  171 VAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH  250 (385)
T ss_pred             EEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc
Confidence            99996    999999988  7889999999 9999999998432211110                           124


Q ss_pred             ccceEEEEecCCCCEEEEEeCCCeEEEEEcc-cCcc-------ccceeeeeeecCCcCCEEEEEe--cC--CEEEEEeCC
Q 009993          316 VGNTKSLARSHTGDFLFTGGEDGAIHMYEII-NDCT-------EANVLLVATWIPHTGPVNSLAF--EF--PWLVSAAGD  383 (520)
Q Consensus       316 ~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~-~~~~-------~~~~~~~~~~~~h~~~v~~l~~--~~--~~l~s~s~d  383 (520)
                      ...|-|+.|-  |+++++-+-++.|..|... -.+.       ......+..+.-....|.-+.|  ++  ++||.|...
T Consensus       251 rnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~  328 (385)
T KOG1034|consen  251 RNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQS  328 (385)
T ss_pred             cchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCC
Confidence            4444444442  6889998889999999872 2211       1112334445555566777776  55  799999999


Q ss_pred             CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCC
Q 009993          384 GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       384 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~  451 (520)
                      |.|.+||++.......             ........+....-++++-++..|+...+|++|.-||.-
T Consensus       329 g~v~vwdL~~~ep~~~-------------ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  329 GKVYVWDLDNNEPPKC-------------TTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             CcEEEEECCCCCCccC-------------ceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            9999999997532210             111222344455667777788899999999999999854

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.86  E-value=1.7e-20  Score=171.38  Aligned_cols=281  Identities=16%  Similarity=0.171  Sum_probs=207.1

Q ss_pred             CCCCCCCCcccHH----Hhhhhhcccc--ccEEEEEEccCCCE-EEEEeCCCeEEEEECCCC--c--EEEEeCCCCceEE
Q 009993          120 PLGAGFSDDKSWK----ELIDVLYGHT--EAVLTVFVLASAKL-LFTSGYDSIVRMWHLEDG--F--SIASSKPLGCTIR  188 (520)
Q Consensus       120 ~~~~~~~~~~~W~----~~~~~l~~h~--~~V~~l~~~~~~~~-l~sgs~dg~v~vwd~~~~--~--~~~~~~~~~~~v~  188 (520)
                      ..+++..+.++|+    +....+-.|+  -.|.++.|+....+ +++.+.|..+++|.-...  +  .+....+....+.
T Consensus         6 ~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv   85 (673)
T KOG4378|consen    6 HVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCV   85 (673)
T ss_pred             eeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHH
Confidence            3456666778887    2222233332  24889999865532 234456888999975322  1  1222333444444


Q ss_pred             EEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCC
Q 009993          189 AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL  266 (520)
Q Consensus       189 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~  266 (520)
                      ++.....++++|+..+.|+|||++..             .....+.+|...|+++.+  ...+|++++..|-|.+..+.+
T Consensus        86 ~~~s~S~y~~sgG~~~~Vkiwdl~~k-------------l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t  152 (673)
T KOG4378|consen   86 ACASQSLYEISGGQSGCVKIWDLRAK-------------LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT  152 (673)
T ss_pred             hhhhcceeeeccCcCceeeehhhHHH-------------HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc
Confidence            44456689999999999999998643             355678899999999999  568999999999999999999


Q ss_pred             CcEEEEeeec-c-CEEEEe--eCCC-EEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCC-CCEEEEEeCCCe
Q 009993          267 LKCLKVLRHS-D-WVYGLA--PHDT-TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT-GDFLFTGGEDGA  339 (520)
Q Consensus       267 ~~~~~~~~~~-~-~v~~~~--~~~~-~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~-~~~l~tg~~dg~  339 (520)
                      +.....+.+. + .|.-+.  +..+ +|.+++ +|.|.+||+....++..+...|..+...++|+|. ..+|++.+.|..
T Consensus       153 ~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk  232 (673)
T KOG4378|consen  153 KQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK  232 (673)
T ss_pred             CccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccce
Confidence            9888888744 3 343444  4444 455566 7999999999998888888889999999999995 567889999999


Q ss_pred             EEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcc
Q 009993          340 IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQR  417 (520)
Q Consensus       340 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (520)
                      |.+||.+..      .....+ .-..+...++|.+  .+|+.|+..|.|..||++..                  ..+..
T Consensus       233 i~~yD~~s~------~s~~~l-~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~------------------k~Pv~  287 (673)
T KOG4378|consen  233 INIYDIRSQ------ASTDRL-TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST------------------KAPVA  287 (673)
T ss_pred             EEEeecccc------ccccee-eecCCcceeeecCCceEEEeecCCceEEEEecccC------------------CCCce
Confidence            999999876      233332 2345889999965  69999999999999999975                  56677


Q ss_pred             cccCcceeeEEEEecCC-EEEE
Q 009993          418 MLHGFECNLLSVDIGAD-RIVC  438 (520)
Q Consensus       418 ~~~~~~~~v~~~~~~~~-~l~s  438 (520)
                      +++.|...|.+++|... .+++
T Consensus       288 v~sah~~sVt~vafq~s~tvlt  309 (673)
T KOG4378|consen  288 VRSAHDASVTRVAFQPSPTVLT  309 (673)
T ss_pred             EeeecccceeEEEeeecceeee
Confidence            78889988999888765 4443

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.86  E-value=8.5e-20  Score=156.00  Aligned_cols=280  Identities=18%  Similarity=0.157  Sum_probs=199.3

Q ss_pred             CCeEEEEECCCCcE---EEEeCCCCceEEEEe---cCCCEEEEEeCC-------CcEEEEEcccCcceeeeccCCccccc
Q 009993          163 DSIVRMWHLEDGFS---IASSKPLGCTIRAVA---ADKKLLVAGGTD-------GFIHCWRAVEVLPHLFDISGSEKQNT  229 (520)
Q Consensus       163 dg~v~vwd~~~~~~---~~~~~~~~~~v~~~~---~~~~~l~sg~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~  229 (520)
                      |+.|.+-+++.+..   .+.+..|.+.|..++   .+...|+++..+       ..+.||.+......    ........
T Consensus        39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~----S~~~tlE~  114 (370)
T KOG1007|consen   39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ----SNSSTLEC  114 (370)
T ss_pred             cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc----cccchhhH
Confidence            67787777765432   234566778888886   455666666543       23678988654321    11122333


Q ss_pred             eEEec-cCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcE-EEEee------eccCEEEEe----eCCCEEEEEcCC
Q 009993          230 QFRLW-EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKC-LKVLR------HSDWVYGLA----PHDTTVASTSGS  295 (520)
Q Consensus       230 ~~~~~-~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~------~~~~v~~~~----~~~~~l~~~~d~  295 (520)
                      +..+. .+-+.|.|+.|  ++..+++-. |..|.+|++..+.. ...+.      +....++-.    .+++.+++.+|+
T Consensus       115 v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~  193 (370)
T KOG1007|consen  115 VASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDS  193 (370)
T ss_pred             hhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCC
Confidence            44443 45679999999  556777766 78999999987765 33332      222222222    468899999999


Q ss_pred             eEEEEECCCCeeeEEeecccccceEEEEecCCCC-EEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC
Q 009993          296 DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD-FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF  374 (520)
Q Consensus       296 ~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  374 (520)
                      ++..||+++......+..+|...|..+.|+|+.+ +|++|++||.|+|||.+...     .++..+.+|...|.++.|+|
T Consensus       194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-----~pv~el~~HsHWvW~VRfn~  268 (370)
T KOG1007|consen  194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-----FPVQELPGHSHWVWAVRFNP  268 (370)
T ss_pred             cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-----ccccccCCCceEEEEEEecC
Confidence            9999999999999999989999999999999866 68899999999999999875     68899999999999999987


Q ss_pred             ---CEEEEEeCCCcEEEEeCCcccccCCCCCCCce---------eeee-ecCCCcccccCcceeeEEEEecCC---EEEE
Q 009993          375 ---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRV---------SRVI-EVEPPQRMLHGFECNLLSVDIGAD---RIVC  438 (520)
Q Consensus       375 ---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~v~~~~~~~~---~l~s  438 (520)
                         ++|++|+.|..|.+|....-........+...         .+.. -.......+..|..+|++++|+..   .+|+
T Consensus       269 ~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS  348 (370)
T KOG1007|consen  269 EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS  348 (370)
T ss_pred             ccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEE
Confidence               69999999999999987653211111000000         0000 112223467789999999999754   9999


Q ss_pred             ecCCCeEEEEeCCc
Q 009993          439 GGEEGIVRIWNFSQ  452 (520)
Q Consensus       439 g~~Dg~v~iwd~~~  452 (520)
                      -+.||+|.|=.+..
T Consensus       349 LSYDGRviIs~V~r  362 (370)
T KOG1007|consen  349 LSYDGRVIISSVPR  362 (370)
T ss_pred             eccCceEEeecCCh
Confidence            99999999877764

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=7.6e-20  Score=158.18  Aligned_cols=290  Identities=16%  Similarity=0.134  Sum_probs=202.0

Q ss_pred             HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR  210 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd  210 (520)
                      ++.++|.-..  -.|+.|++.|.+||+|..||.|.|||+.|...-+.+.+|-.+|.+++  ++|++|+|++.|..|.+||
T Consensus        16 el~~tld~~~--a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwD   93 (405)
T KOG1273|consen   16 ELTHTLDNPL--AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWD   93 (405)
T ss_pred             hhceeccCCc--cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEe
Confidence            3444453322  68999999999999999999999999999888788888888887665  9999999999999999999


Q ss_pred             cccCcceeeeccCCccccceEEeccCCCCeEEEEEc---CCEEEEEecCCeEEEEECCCCcEEEEee--ec---cCEE--
Q 009993          211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGSWDMTVRVWDRALLKCLKVLR--HS---DWVY--  280 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~---~~v~--  280 (520)
                      +..|.             +...+ ...++|....|.   .+..++.-.+..-.+-++..+.. ..+.  ..   +.+-  
T Consensus        94 l~~gs-------------~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~  158 (405)
T KOG1273|consen   94 LLKGS-------------PLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASH  158 (405)
T ss_pred             ccCCC-------------ceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCcccccccccc
Confidence            98774             22222 346788888883   34555554455555555544221 1121  11   1111  


Q ss_pred             -EEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCc---ccccee
Q 009993          281 -GLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC---TEANVL  355 (520)
Q Consensus       281 -~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~---~~~~~~  355 (520)
                       .+...|+++++|. .|.+.++|..+.+++..+.......|..+.++..|++|+.-+.|..|+.|+++.-.   ....+.
T Consensus       159 ~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e  238 (405)
T KOG1273|consen  159 GVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVE  238 (405)
T ss_pred             ccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcC
Confidence             2447899999999 89999999999999888874344788999999999999999999999999987321   111222


Q ss_pred             eeeeecC--CcCCEEEEEecC--CEEEEEeC-CCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcc-eeeEEE
Q 009993          356 LVATWIP--HTGPVNSLAFEF--PWLVSAAG-DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE-CNLLSV  429 (520)
Q Consensus       356 ~~~~~~~--h~~~v~~l~~~~--~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~  429 (520)
                      +.+.+..  ....=.++.|++  .|+++|+. -..++||.-..                   +...++++|.. .....+
T Consensus       239 ~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~-------------------GsLVKILhG~kgE~l~DV  299 (405)
T KOG1273|consen  239 PEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI-------------------GSLVKILHGTKGEELLDV  299 (405)
T ss_pred             hhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCC-------------------cceeeeecCCchhheeec
Confidence            2222211  111224556654  57777664 56799999877                   45666777766 455666


Q ss_pred             EecCC--EEEEecCCCeEEEEeCCchHhHHHH
Q 009993          430 DIGAD--RIVCGGEEGIVRIWNFSQAFEIERR  459 (520)
Q Consensus       430 ~~~~~--~l~sg~~Dg~v~iwd~~~~~~~~~~  459 (520)
                      .|++-  .+++- ..|.|++|...........
T Consensus       300 ~whp~rp~i~si-~sg~v~iw~~~~~enwsaf  330 (405)
T KOG1273|consen  300 NWHPVRPIIASI-ASGVVYIWAVVQVENWSAF  330 (405)
T ss_pred             ccccceeeeeec-cCCceEEEEeecccchhhc
Confidence            67665  55555 6789999998765444333

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.86  E-value=7e-20  Score=166.00  Aligned_cols=288  Identities=15%  Similarity=0.115  Sum_probs=198.7

Q ss_pred             hhhhccccccEEEEEEccCC--CEEEEEeCCCeEEEEECCCC----cEEEEeCCCCceEEEEe---cCCCEEEEEeCCCc
Q 009993          135 IDVLYGHTEAVLTVFVLASA--KLLFTSGYDSIVRMWHLEDG----FSIASSKPLGCTIRAVA---ADKKLLVAGGTDGF  205 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~--~~l~sgs~dg~v~vwd~~~~----~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~  205 (520)
                      ....+-|.++|++++|+|..  +++++|..-|.|-+||+.+.    ..+..+.+|..+|.++.   .+...+++.+.||+
T Consensus       179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT  258 (498)
T ss_pred             cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence            34556789999999999964  58899999999999999533    34556788988888776   45668999999999


Q ss_pred             EEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcE-EEEee-eccCEEE
Q 009993          206 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKC-LKVLR-HSDWVYG  281 (520)
Q Consensus       206 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~-~~~~v~~  281 (520)
                      |++-|++.+..           ..+..+......+.++.+  +...++.+..=|...+||.+++.. ...+. |...|.+
T Consensus       259 iR~~D~~~~i~-----------e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~s  327 (498)
T KOG4328|consen  259 IRLQDFEGNIS-----------EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITS  327 (498)
T ss_pred             eeeeeecchhh-----------HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccce
Confidence            99999977632           223333334445566666  445567777667999999998765 33333 7779999


Q ss_pred             Ee---eCCCEEEEEc-CCeEEEEECCCCeeeE---EeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccce
Q 009993          282 LA---PHDTTVASTS-GSDVYIWDTNSGCLLT---VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV  354 (520)
Q Consensus       282 ~~---~~~~~l~~~~-d~~i~iwd~~~~~~~~---~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~  354 (520)
                      ++   ....++++++ |++++|||++......   .....|...|.+..|||.+..|+|.+.|..|+|||..--...  .
T Consensus       328 v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~--~  405 (498)
T KOG4328|consen  328 VALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK--D  405 (498)
T ss_pred             eecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc--C
Confidence            88   4567888888 9999999998643222   111259999999999999988999999999999998411000  0


Q ss_pred             eeeeeecCCcC------CEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceee
Q 009993          355 LLVATWIPHTG------PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL  426 (520)
Q Consensus       355 ~~~~~~~~h~~------~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  426 (520)
                      .+..++ .|..      ......|+|  .++++|-.-..|-|+|-..++......           .+..    ..-..+
T Consensus       406 ~p~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~-----------~P~~----~tI~~v  469 (498)
T KOG4328|consen  406 EPLGTI-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELH-----------DPES----STIPSV  469 (498)
T ss_pred             Ccccee-eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeecc-----------Cccc----cccccc
Confidence            122221 2221      223445777  688899888899999987653221100           1111    111346


Q ss_pred             EEEEecCC-EEEEecCCCeEEEEeCC
Q 009993          427 LSVDIGAD-RIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       427 ~~~~~~~~-~l~sg~~Dg~v~iwd~~  451 (520)
                      ..++|-++ .++-++..|.|+||--+
T Consensus       470 n~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  470 NEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             eeecccccceeccCCccceEEEEecC
Confidence            67777777 45555567888888543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.86  E-value=1.3e-19  Score=157.31  Aligned_cols=268  Identities=20%  Similarity=0.304  Sum_probs=192.7

Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEECCCCcE------------EEEeC-CCCceEEEE---------ecCCCEEEEEeCC
Q 009993          146 LTVFVLASAKLLFTSGYDSIVRMWHLEDGFS------------IASSK-PLGCTIRAV---------AADKKLLVAGGTD  203 (520)
Q Consensus       146 ~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~------------~~~~~-~~~~~v~~~---------~~~~~~l~sg~~d  203 (520)
                      ..+.|+|||..|++-+.|..+.+|++.....            ..+++ .....|...         .|+..++++.+.+
T Consensus        53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~  132 (406)
T KOG2919|consen   53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD  132 (406)
T ss_pred             ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence            4578999999999999999999999853210            01111 122333322         2788899999999


Q ss_pred             CcEEEEEcccCcceeeeccCCccccceEEeccCCCCe---EEEEE--cCCEEEEEecCCeEEEEEC-CCCcEEEE---ee
Q 009993          204 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPI---TSLAL--DLTRIYSGSWDMTVRVWDR-ALLKCLKV---LR  274 (520)
Q Consensus       204 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---~~l~~--~~~~l~s~s~dg~v~iwd~-~~~~~~~~---~~  274 (520)
                      .-|++||.-+|..           ........|...+   .+++|  ||.+|++|.. ..|+++|+ +.|..-..   +.
T Consensus       133 ~PIh~wdaftG~l-----------raSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~  200 (406)
T KOG2919|consen  133 QPIHLWDAFTGKL-----------RASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVT  200 (406)
T ss_pred             Cceeeeecccccc-----------ccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhh
Confidence            9999999988752           2333334454443   46788  7788887764 79999999 55543222   21


Q ss_pred             -----eccCEEEEe--e-CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC-CCeEEEEE
Q 009993          275 -----HSDWVYGLA--P-HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DGAIHMYE  344 (520)
Q Consensus       275 -----~~~~v~~~~--~-~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~-dg~i~iwd  344 (520)
                           ..+-+.+++  | +...+++++ ...+-|+.-..+.++..+. +|.+.|+.++|.++|+.|++|+. |-.|.+||
T Consensus       201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~~~edGn~lfsGaRk~dkIl~WD  279 (406)
T KOG2919|consen  201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQWCEDGNKLFSGARKDDKILCWD  279 (406)
T ss_pred             cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-ccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence                 245556665  4 455888888 7888888888888888876 79999999999999999999876 67899999


Q ss_pred             cccCccccceeeeeeecCCcC-CEEEEEec----CCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc
Q 009993          345 IINDCTEANVLLVATWIPHTG-PVNSLAFE----FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML  419 (520)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (520)
                      ++...     .++..+..|.+ .-..|.|+    +++|++|+.||.|++||+.+.                  ......+
T Consensus       280 iR~~~-----~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~------------------gn~~sv~  336 (406)
T KOG2919|consen  280 IRYSR-----DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL------------------GNEVSVT  336 (406)
T ss_pred             ehhcc-----chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC------------------CCccccc
Confidence            99875     56777888877 55567773    379999999999999999874                  2234445


Q ss_pred             cCcceeeEEEEecCC--EEEEecCCCeEEEEeCCc
Q 009993          420 HGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQ  452 (520)
Q Consensus       420 ~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~  452 (520)
                      ..+...+..++.++-  .++|++..   |+|...+
T Consensus       337 ~~~sd~vNgvslnP~mpilatssGq---r~f~~~~  368 (406)
T KOG2919|consen  337 GNYSDTVNGVSLNPIMPILATSSGQ---RIFKYPK  368 (406)
T ss_pred             ccccccccceecCcccceeeeccCc---eeecCCC
Confidence            566777777887776  66666542   4444443

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=7.1e-21  Score=176.88  Aligned_cols=255  Identities=21%  Similarity=0.302  Sum_probs=193.1

Q ss_pred             ccHHHhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCC--------CcEEEEeCCCCceEEEEe--cCCCEEE
Q 009993          129 KSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED--------GFSIASSKPLGCTIRAVA--ADKKLLV  198 (520)
Q Consensus       129 ~~W~~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~--------~~~~~~~~~~~~~v~~~~--~~~~~l~  198 (520)
                      +.|..-. ++..|.+.|+.++|.|....|++++.||++++|+++.        -+++.+|.+|..+|.|+.  .++..++
T Consensus       282 k~w~ik~-tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y  360 (577)
T KOG0642|consen  282 KKWNIKF-TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY  360 (577)
T ss_pred             eecceee-eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEE
Confidence            3355333 8899999999999999999999999999999999932        257889999999999887  8899999


Q ss_pred             EEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--
Q 009993          199 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--  274 (520)
Q Consensus       199 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--  274 (520)
                      +|+.||+|+.|++. .....++  ..........+.||++.|+.+++  ....|++++.||+|+.|+...... .++.  
T Consensus       361 sgg~Dg~I~~w~~p-~n~dp~d--s~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~  436 (577)
T KOG0642|consen  361 SGGIDGTIRCWNLP-PNQDPDD--SYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEP  436 (577)
T ss_pred             eeccCceeeeeccC-CCCCccc--ccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCc
Confidence            99999999999875 2222111  12223455678899999999999  457799999999999999876655 3333  


Q ss_pred             -eccCEEEEee---CCCEEEEEc-CCeEEEEECCCCeeeEEeecc------cccceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993          275 -HSDWVYGLAP---HDTTVASTS-GSDVYIWDTNSGCLLTVVNGA------HVGNTKSLARSHTGDFLFTGGEDGAIHMY  343 (520)
Q Consensus       275 -~~~~v~~~~~---~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~------~~~~i~~l~~s~~~~~l~tg~~dg~i~iw  343 (520)
                       ....-.+++.   .....++.. -+.-.+++......+..+...      ....+..+..+|.+.+.+++.+|+.|+++
T Consensus       437 ~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~  516 (577)
T KOG0642|consen  437 KEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFF  516 (577)
T ss_pred             cccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecc
Confidence             2223334442   212222222 344445555555555544321      12356788899999999999999999999


Q ss_pred             EcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993          344 EIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       344 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  394 (520)
                      |..++      .++.....|...+++++++|  .+|++++.|+.+++|.+...
T Consensus       517 dn~~~------~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  517 DNKTG------KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             ccccc------ccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence            99999      78889999999999999976  69999999999999998764

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.84  E-value=2e-19  Score=159.24  Aligned_cols=241  Identities=19%  Similarity=0.197  Sum_probs=177.2

Q ss_pred             hhccccccEEEEEEccCC--CEEEEEeCCCeEEEEECCC----------------CcEEEEeCCCCceEEEE--ec-CCC
Q 009993          137 VLYGHTEAVLTVFVLASA--KLLFTSGYDSIVRMWHLED----------------GFSIASSKPLGCTIRAV--AA-DKK  195 (520)
Q Consensus       137 ~l~~h~~~V~~l~~~~~~--~~l~sgs~dg~v~vwd~~~----------------~~~~~~~~~~~~~v~~~--~~-~~~  195 (520)
                      ..-+|.+.|..+.-++-+  .+.++=+..|.|.||++..                .+++.++.+|...-+++  +| ...
T Consensus       146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g  225 (440)
T KOG0302|consen  146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG  225 (440)
T ss_pred             cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence            345788888887777654  4566667789999999853                24566777776554444  44 233


Q ss_pred             EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCC---cE
Q 009993          196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALL---KC  269 (520)
Q Consensus       196 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~---~~  269 (520)
                      .|++|..-+.|++|...++.-.          .-...+.+|+..|..|+|   ..+.|++||.||+|+|||++.+   .+
T Consensus       226 ~LlsGDc~~~I~lw~~~~g~W~----------vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~  295 (440)
T KOG0302|consen  226 RLLSGDCVKGIHLWEPSTGSWK----------VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA  295 (440)
T ss_pred             ccccCccccceEeeeeccCcee----------ecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccce
Confidence            5888888899999998876421          223456679999999999   5578999999999999999988   55


Q ss_pred             EEEeeeccCEEEEeeC--CCEEEEEc-CCeEEEEECCC---CeeeEEeecccccceEEEEecCCC-CEEEEEeCCCeEEE
Q 009993          270 LKVLRHSDWVYGLAPH--DTTVASTS-GSDVYIWDTNS---GCLLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHM  342 (520)
Q Consensus       270 ~~~~~~~~~v~~~~~~--~~~l~~~~-d~~i~iwd~~~---~~~~~~~~~~~~~~i~~l~~s~~~-~~l~tg~~dg~i~i  342 (520)
                      +.+-.|..-|+.++.+  ..+|++|+ ||+++|||++.   ++++..+. .|..+|+++.|+|.. ..|++++.|..|.+
T Consensus       296 ~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk-~Hk~pItsieW~p~e~s~iaasg~D~Qiti  374 (440)
T KOG0302|consen  296 VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK-YHKAPITSIEWHPHEDSVIAASGEDNQITI  374 (440)
T ss_pred             eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE-eccCCeeEEEeccccCceEEeccCCCcEEE
Confidence            5555599999999843  34788888 89999999986   56778887 599999999999954 57888999999999


Q ss_pred             EEcccCccccc-----e-----eeeeeecCC--cCCEEEEEec---CCEEEEEeCCCcEEEE
Q 009993          343 YEIINDCTEAN-----V-----LLVATWIPH--TGPVNSLAFE---FPWLVSAAGDGKLSLI  389 (520)
Q Consensus       343 wd~~~~~~~~~-----~-----~~~~~~~~h--~~~v~~l~~~---~~~l~s~s~dg~i~vw  389 (520)
                      ||+........     .     .+-+-+.-|  ...+-.+.|+   |.+|++.+.|| +.||
T Consensus       375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             EEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence            99965432100     0     111222334  3357788886   47999999998 4444

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.84  E-value=1.1e-19  Score=166.07  Aligned_cols=282  Identities=16%  Similarity=0.152  Sum_probs=196.1

Q ss_pred             eCCCeEEEEECCCCcEEEEeCCCC--ceEEEEecC-CCEEEEE--eCCCcEEEEEcccCcceeeeccCCccccceEEecc
Q 009993          161 GYDSIVRMWHLEDGFSIASSKPLG--CTIRAVAAD-KKLLVAG--GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE  235 (520)
Q Consensus       161 s~dg~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~-~~~l~sg--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  235 (520)
                      +...++++||+...+....+..|+  ..+.++..+ .+.|+++  +.|..+++|.-......         ........+
T Consensus         9 S~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~---------Vp~~~k~~g   79 (673)
T KOG4378|consen    9 STGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPE---------VPRVRKLTG   79 (673)
T ss_pred             ccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCc---------cceeecccc
Confidence            334469999997665444443222  224455422 2225444  45777888864322100         011111222


Q ss_pred             CCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeE
Q 009993          236 HEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLT  309 (520)
Q Consensus       236 h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~  309 (520)
                      .  .-.|++.  ...++++|+..+.|+|||++...+.+.+. |.+.|+++.  ..+.+|++++ +|.|.|..+.++..-.
T Consensus        80 d--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt  157 (673)
T KOG4378|consen   80 D--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTT  157 (673)
T ss_pred             c--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccc
Confidence            2  2233433  34789999999999999999777777776 999999998  6688999999 7999999999998888


Q ss_pred             EeecccccceEEEEecCCCCE-EEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCc
Q 009993          310 VVNGAHVGNTKSLARSHTGDF-LFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGK  385 (520)
Q Consensus       310 ~~~~~~~~~i~~l~~s~~~~~-l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~  385 (520)
                      .+..+....|.-+.|+|..++ |.+++++|.|.+||+....     +...-...|..+...|+|+|   ..|++.+.|..
T Consensus       158 ~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s-----p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk  232 (673)
T KOG4378|consen  158 TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS-----PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK  232 (673)
T ss_pred             ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC-----cccchhhhccCCcCcceecCCccceEEEecccce
Confidence            886444556778999997764 5678999999999998874     33445568999999999976   59999999999


Q ss_pred             EEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcc
Q 009993          386 LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRG  465 (520)
Q Consensus       386 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~  465 (520)
                      |.+||++...                  ...+....|.....++..+|.+|+.|...|.|..||++....+-....+   
T Consensus       233 i~~yD~~s~~------------------s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa---  291 (673)
T KOG4378|consen  233 INIYDIRSQA------------------STDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA---  291 (673)
T ss_pred             EEEeeccccc------------------ccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee---
Confidence            9999998632                  1222334566667778888889999999999999999865543332222   


Q ss_pred             cccchhhhhccceeeeccCC
Q 009993          466 IRLENRMRRRKLQTEMSSKG  485 (520)
Q Consensus       466 ~~~~~~~~~~~~~~~~s~~g  485 (520)
                            +...++.++|.|.-
T Consensus       292 ------h~~sVt~vafq~s~  305 (673)
T KOG4378|consen  292 ------HDASVTRVAFQPSP  305 (673)
T ss_pred             ------cccceeEEEeeecc
Confidence                  22235666776654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.84  E-value=2.2e-19  Score=168.80  Aligned_cols=149  Identities=15%  Similarity=0.182  Sum_probs=110.3

Q ss_pred             eEEEEecC-CCCEEEEEeCCCeEEEEEcccCcccc-ceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCc
Q 009993          319 TKSLARSH-TGDFLFTGGEDGAIHMYEIINDCTEA-NVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       319 i~~l~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~  393 (520)
                      |+.+.|.| |...|+++++||.|++|.+..+.... ...+...+..|...|+++.|+|   +.|++++.|.+|++||+.+
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~  709 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN  709 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence            66777877 66789999999999999998764332 2345667789999999999998   7999999999999999998


Q ss_pred             ccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC--CEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchh
Q 009993          394 LLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENR  471 (520)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  471 (520)
                      .                   .....+.+|+..|+.++|++  +.++|.+.||+|++|+-..+.+.-...   .+.     
T Consensus       710 ~-------------------~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg---~gp-----  762 (1012)
T KOG1445|consen  710 A-------------------KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEG---KGP-----  762 (1012)
T ss_pred             h-------------------hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccC---CCC-----
Confidence            4                   34445788999988877765  599999999999999988765432211   111     


Q ss_pred             hhhccceeeeccCCCcccccccc
Q 009993          472 MRRRKLQTEMSSKGGRTDQCSVA  494 (520)
Q Consensus       472 ~~~~~~~~~~s~~g~~~~~~s~~  494 (520)
                      ...+-..+-|-=||+.++...++
T Consensus       763 vgtRgARi~wacdgr~viv~Gfd  785 (1012)
T KOG1445|consen  763 VGTRGARILWACDGRIVIVVGFD  785 (1012)
T ss_pred             ccCcceeEEEEecCcEEEEeccc
Confidence            11223445566667666665543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=9.4e-20  Score=159.42  Aligned_cols=245  Identities=16%  Similarity=0.232  Sum_probs=178.7

Q ss_pred             CEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE----cCCEEEEEecCCeEEEEECCCCcEE
Q 009993          195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRALLKCL  270 (520)
Q Consensus       195 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~v~iwd~~~~~~~  270 (520)
                      ..++++...|.|++||..++.             ....+.++...++.+.|    .+..+.+|+.||+|++||+++....
T Consensus        41 ~~vav~lSngsv~lyd~~tg~-------------~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~  107 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQ-------------LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES  107 (376)
T ss_pred             eeEEEEecCCeEEEEeccchh-------------hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh
Confidence            568899999999999988763             45567788888888888    3478999999999999999988766


Q ss_pred             EEee---ec-cCEEEEe--eCCCEEEEEc-----CCeEEEEECCCCee-eEEeecccccceEEEEecC-CCCEEEEEeCC
Q 009993          271 KVLR---HS-DWVYGLA--PHDTTVASTS-----GSDVYIWDTNSGCL-LTVVNGAHVGNTKSLARSH-TGDFLFTGGED  337 (520)
Q Consensus       271 ~~~~---~~-~~v~~~~--~~~~~l~~~~-----d~~i~iwd~~~~~~-~~~~~~~~~~~i~~l~~s~-~~~~l~tg~~d  337 (520)
                      ..+.   ++ .+..+++  ..++.+++|.     +..|.+||.+..+. +..+...|...|+++.|+| +.++|++|+.|
T Consensus       108 a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD  187 (376)
T KOG1188|consen  108 ARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVD  187 (376)
T ss_pred             hheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeeccc
Confidence            6654   33 4667777  3677888776     35699999998876 7777778999999999999 55799999999


Q ss_pred             CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccccCCCCCC-----------
Q 009993          338 GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSG-----------  403 (520)
Q Consensus       338 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-----------  403 (520)
                      |.|.+||+......   ..+.....|...|.++.|.+   +.|.+-+...+..+|+++.+.........           
T Consensus       188 GLvnlfD~~~d~Ee---DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~  264 (376)
T KOG1188|consen  188 GLVNLFDTKKDNEE---DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKED  264 (376)
T ss_pred             ceEEeeecCCCcch---hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhh
Confidence            99999999876322   23444456788899999954   47999999999999999875422211110           


Q ss_pred             ------------C-c-------------eeeee-----ecCCCcccccC-cceeeEEEEec--CCEEEEecCCCeEEEEe
Q 009993          404 ------------K-R-------------VSRVI-----EVEPPQRMLHG-FECNLLSVDIG--ADRIVCGGEEGIVRIWN  449 (520)
Q Consensus       404 ------------~-~-------------~~~~~-----~~~~~~~~~~~-~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd  449 (520)
                                  . .             ..++.     ........+++ |...|.++.++  ++.+.|||+||.+.+|.
T Consensus       265 ~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk  344 (376)
T KOG1188|consen  265 NCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK  344 (376)
T ss_pred             hhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence                        0 0             00000     11112233444 44445555554  45999999999999999


Q ss_pred             CCchHh
Q 009993          450 FSQAFE  455 (520)
Q Consensus       450 ~~~~~~  455 (520)
                      .+...+
T Consensus       345 ~~da~e  350 (376)
T KOG1188|consen  345 VEDATE  350 (376)
T ss_pred             cCCccc
Confidence            755443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.83  E-value=5.5e-18  Score=160.40  Aligned_cols=240  Identities=13%  Similarity=0.092  Sum_probs=168.2

Q ss_pred             hhhhhccccccEEEEEEccCCCEE-EEEeCCCeEEEEECCCCcEEEEeCCCC-ceEEEEecCCCEEEEE-eCCCcEEEEE
Q 009993          134 LIDVLYGHTEAVLTVFVLASAKLL-FTSGYDSIVRMWHLEDGFSIASSKPLG-CTIRAVAADKKLLVAG-GTDGFIHCWR  210 (520)
Q Consensus       134 ~~~~l~~h~~~V~~l~~~~~~~~l-~sgs~dg~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~l~sg-~~dg~i~vwd  210 (520)
                      ....+.+|.. +.+++|+|+++.+ ++++.++.|++||..+++.+..+..+. ....+++++++.++++ +.|+.|++||
T Consensus        23 ~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d  101 (300)
T TIGR03866        23 VTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVID  101 (300)
T ss_pred             eEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEE
Confidence            3455665544 6789999999876 567789999999999998877665433 3445667898877654 5689999999


Q ss_pred             cccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCC-eEEEEECCCCcEEEEeeeccCEE--EEeeC
Q 009993          211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM-TVRVWDRALLKCLKVLRHSDWVY--GLAPH  285 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg-~v~iwd~~~~~~~~~~~~~~~v~--~~~~~  285 (520)
                      +.+..             ....+. +...+.++++  ++..+++++.++ .+.+||..+++....+.......  .+.++
T Consensus       102 ~~~~~-------------~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~d  167 (300)
T TIGR03866       102 IETRK-------------VLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTAD  167 (300)
T ss_pred             CCCCe-------------EEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCC
Confidence            87642             122222 2234567787  678888888765 57788998887766554333333  44588


Q ss_pred             CCEEEEE-c-CCeEEEEECCCCeeeEEeecc----c--ccceEEEEecCCCCEEEE-EeCCCeEEEEEcccCccccceee
Q 009993          286 DTTVAST-S-GSDVYIWDTNSGCLLTVVNGA----H--VGNTKSLARSHTGDFLFT-GGEDGAIHMYEIINDCTEANVLL  356 (520)
Q Consensus       286 ~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~----~--~~~i~~l~~s~~~~~l~t-g~~dg~i~iwd~~~~~~~~~~~~  356 (520)
                      ++.++++ . ++.|++||+++++.+..+...    +  ......++|+|+++++++ .+.++.+.+||+++.      +.
T Consensus       168 g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~------~~  241 (300)
T TIGR03866       168 GKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY------EV  241 (300)
T ss_pred             CCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC------cE
Confidence            8887554 4 899999999999877665411    1  112356889999998654 455678999999877      33


Q ss_pred             eeeecCCcCCEEEEEecC--CEEEEE-eCCCcEEEEeCCccc
Q 009993          357 VATWIPHTGPVNSLAFEF--PWLVSA-AGDGKLSLIDVRKLL  395 (520)
Q Consensus       357 ~~~~~~h~~~v~~l~~~~--~~l~s~-s~dg~i~vwd~~~~~  395 (520)
                      ...+ .+...+.+++|+|  .+|+++ +.+|.|.+||+.+..
T Consensus       242 ~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       242 LDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             EEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence            3333 2345788999976  577776 568999999999853

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=1.9e-20  Score=187.79  Aligned_cols=276  Identities=15%  Similarity=0.134  Sum_probs=199.5

Q ss_pred             EEEEccCCC-EEEEE----------eCCCeEEEEECCCC--c----EEEEeC-CCCceEEEEecCCC----EEEEEeCCC
Q 009993          147 TVFVLASAK-LLFTS----------GYDSIVRMWHLEDG--F----SIASSK-PLGCTIRAVAADKK----LLVAGGTDG  204 (520)
Q Consensus       147 ~l~~~~~~~-~l~sg----------s~dg~v~vwd~~~~--~----~~~~~~-~~~~~v~~~~~~~~----~l~sg~~dg  204 (520)
                      .++|+|.+. ++++|          +.+.++-||.+.-.  .    .+..+. .+.-.-..+.+.+.    .|+.|..||
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG   90 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG   90 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence            457888775 55554          23455666655322  1    222221 11122233443333    588999999


Q ss_pred             cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcEEEEee---eccC
Q 009993          205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDW  278 (520)
Q Consensus       205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~  278 (520)
                      .|.+||...-       ........+.+...|++.|..+.|   .++.|++|+.||.|.|||+...+.-....   ..+.
T Consensus        91 ~I~ly~p~~~-------~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~e  163 (1049)
T KOG0307|consen   91 NIVLYDPASI-------IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSE  163 (1049)
T ss_pred             ceEEecchhh-------ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCccc
Confidence            9999997542       112334456677789999999999   45799999999999999998765555442   5677


Q ss_pred             EEEEeeC---CCEEEEEc-CCeEEEEECCCCeeeEEeecccc--cceEEEEecCCCC-EEEEEeCCC---eEEEEEcccC
Q 009993          279 VYGLAPH---DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHV--GNTKSLARSHTGD-FLFTGGEDG---AIHMYEIIND  348 (520)
Q Consensus       279 v~~~~~~---~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~--~~i~~l~~s~~~~-~l~tg~~dg---~i~iwd~~~~  348 (520)
                      |.+++.+   .+.|++++ +|.+.|||++..+.+..+.. +.  ..+..++|+|+.. .++++++|.   .|.+||+|..
T Consensus       164 I~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~-~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a  242 (1049)
T KOG0307|consen  164 IKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD-TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA  242 (1049)
T ss_pred             ceEeccchhhhHHhhccCCCCCceeccccCCCccccccc-CCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc
Confidence            8888844   56788888 78999999999988877763 33  3578999999764 566666553   5999999987


Q ss_pred             ccccceeeeeeecCCcCCEEEEEec---CCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCccee
Q 009993          349 CTEANVLLVATWIPHTGPVNSLAFE---FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN  425 (520)
Q Consensus       349 ~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (520)
                      .     .+++.+.+|...|.++.|.   +.+|++++.|+.|.+|+.+++...                   ..+......
T Consensus       243 s-----sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl-------------------~~~p~~~nW  298 (1049)
T KOG0307|consen  243 S-----SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL-------------------GELPAQGNW  298 (1049)
T ss_pred             C-----CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe-------------------eecCCCCcc
Confidence            5     5788889999999999995   479999999999999999985322                   223334456


Q ss_pred             eEEEEecCC---EEEEecCCCeEEEEeCCchH
Q 009993          426 LLSVDIGAD---RIVCGGEEGIVRIWNFSQAF  454 (520)
Q Consensus       426 v~~~~~~~~---~l~sg~~Dg~v~iwd~~~~~  454 (520)
                      ++.+.|.++   .+++++.||.|.||.+....
T Consensus       299 ~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  299 CFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            777888765   89999999999999997654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=1e-18  Score=173.34  Aligned_cols=300  Identities=16%  Similarity=0.228  Sum_probs=200.9

Q ss_pred             ccHHHhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCC---ceEEEEe----cCCCEEEEEe
Q 009993          129 KSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG---CTIRAVA----ADKKLLVAGG  201 (520)
Q Consensus       129 ~~W~~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~---~~v~~~~----~~~~~l~sg~  201 (520)
                      -.|++...+  +...+-..+.|+|-...++++...-.|+|||.+.++.+..|..+.   ..|..+.    .|..++++|+
T Consensus      1053 ~~W~~~~~~--~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas 1130 (1387)
T KOG1517|consen 1053 GNWDQKFMT--GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTAS 1130 (1387)
T ss_pred             cchHHHHHh--cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeec
Confidence            456644333  333355677889988899999888889999999999988876543   3444444    5667899999


Q ss_pred             CCCcEEEEEcccC---cceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--
Q 009993          202 TDGFIHCWRAVEV---LPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--  274 (520)
Q Consensus       202 ~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--  274 (520)
                      .||.|+||+-...   ...+...-  ...  .-.+.+-.+.=.-+.|  ...+|++++.-..|+|||.....+...+.  
T Consensus      1131 ~dGvIRIwk~y~~~~~~~eLVTaw--~~L--s~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~ 1206 (1387)
T KOG1517|consen 1131 SDGVIRIWKDYADKWKKPELVTAW--SSL--SDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG 1206 (1387)
T ss_pred             cCceEEEecccccccCCceeEEee--ccc--cccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccC
Confidence            9999999974221   11111000  000  0001111111133455  44566666667899999999888888776  


Q ss_pred             eccCEEEEe---eCCCEEEEEc-CCeEEEEECCCCee---eEEeecccccc--eEEEEecCCCC-EEEEEeCCCeEEEEE
Q 009993          275 HSDWVYGLA---PHDTTVASTS-GSDVYIWDTNSGCL---LTVVNGAHVGN--TKSLARSHTGD-FLFTGGEDGAIHMYE  344 (520)
Q Consensus       275 ~~~~v~~~~---~~~~~l~~~~-d~~i~iwd~~~~~~---~~~~~~~~~~~--i~~l~~s~~~~-~l~tg~~dg~i~iwd  344 (520)
                      ....|++++   ..|+.+++|. ||.|++||.+....   +.... .|...  |..+.+.+.|- .|++|+.||.|++||
T Consensus      1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R-~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~D 1285 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR-EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLD 1285 (1387)
T ss_pred             CCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec-ccCCcccceeEEeecCCCcceeeeccCCeEEEEe
Confidence            566778887   5688999998 99999999986533   34443 57776  99999988765 499999999999999


Q ss_pred             cccCccccceeeeeeecCCc--C-CEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc
Q 009993          345 IINDCTEANVLLVATWIPHT--G-PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML  419 (520)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~h~--~-~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (520)
                      ++......    ..+...|.  + ..+++..++  ..+++|+. +.|+||++.........             .....+
T Consensus      1286 lR~~~~e~----~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k-------------~n~~F~ 1347 (1387)
T KOG1517|consen 1286 LRMSSKET----FLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIK-------------YNPGFM 1347 (1387)
T ss_pred             cccCcccc----cceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccc-------------cCcccc
Confidence            99863221    12222232  3 588998865  78999998 99999999764222111             111111


Q ss_pred             cCcceeeEEEEecCC--EEEEecCCCeEEEEeCCch
Q 009993          420 HGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       420 ~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~  453 (520)
                      ......+.|+.|++.  .+|+|+.|.+|.||..+.+
T Consensus      1348 ~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             cCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence            222234466666665  8999999999999988765

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=6.3e-19  Score=160.05  Aligned_cols=267  Identities=18%  Similarity=0.224  Sum_probs=198.3

Q ss_pred             hhhhhcCCCCCCCCCCCCC-CCcccHH------HhhhhhccccccEEEEEEccCCC-EEEEEeCCCeEEEEECCCCcEEE
Q 009993          107 FYCERWGLPIASAPLGAGF-SDDKSWK------ELIDVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIA  178 (520)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~-~~~~~W~------~~~~~l~~h~~~V~~l~~~~~~~-~l~sgs~dg~v~vwd~~~~~~~~  178 (520)
                      +.+..|+ |...+++..|. ...+++.      ..++.+.--.-+|.+..|.|+|. .+++++.-...+.||+.+.+..+
T Consensus       216 I~sv~FH-p~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k  294 (514)
T KOG2055|consen  216 ITSVQFH-PTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTK  294 (514)
T ss_pred             ceEEEec-CCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccccc
Confidence            3455555 45455544442 2223333      55777777788999999999998 99999999999999999886543


Q ss_pred             E--eCCCCc---eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEE
Q 009993          179 S--SKPLGC---TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIY  251 (520)
Q Consensus       179 ~--~~~~~~---~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~  251 (520)
                      .  ..++..   .-..+++++++|+..+..|.|.+....+++             .+. -..-.+.|..++|  ++..|+
T Consensus       295 ~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e-------------li~-s~KieG~v~~~~fsSdsk~l~  360 (514)
T KOG2055|consen  295 LKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE-------------LIT-SFKIEGVVSDFTFSSDSKELL  360 (514)
T ss_pred             ccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh-------------hhh-eeeeccEEeeEEEecCCcEEE
Confidence            3  333332   234556999999999999999999877763             111 1234678999999  788899


Q ss_pred             EEecCCeEEEEECCCCcEEEEeeeccCEE----EEeeCCCEEEEEc-CCeEEEEECCC------CeeeEEeecccccceE
Q 009993          252 SGSWDMTVRVWDRALLKCLKVLRHSDWVY----GLAPHDTTVASTS-GSDVYIWDTNS------GCLLTVVNGAHVGNTK  320 (520)
Q Consensus       252 s~s~dg~v~iwd~~~~~~~~~~~~~~~v~----~~~~~~~~l~~~~-d~~i~iwd~~~------~~~~~~~~~~~~~~i~  320 (520)
                      +.+.+|.|.+||+++..+++.+...+.|.    |++.++.++++|+ .|.|.|||.++      .+++..+. .-...|+
T Consensus       361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d-NLtt~It  439 (514)
T KOG2055|consen  361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD-NLTTAIT  439 (514)
T ss_pred             EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh-hhheeee
Confidence            99999999999999999999998555543    4458999999999 69999999754      35555554 3567899


Q ss_pred             EEEecCCCCEEEEEeC--CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCC
Q 009993          321 SLARSHTGDFLFTGGE--DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       321 ~l~~s~~~~~l~tg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~  392 (520)
                      +|.|+|++++|+.++.  +..+++-.+.....-.++..   ....-+.|+|++|+|  .+|+.|..+|.|.+|.+.
T Consensus       440 sl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~---~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  440 SLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPT---SNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeeeCcchhhhhhhhhccccceEEEeccceeeeccCCC---CCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            9999999999887765  56788887766522111111   123345799999988  699999999999999875

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=5.3e-18  Score=141.66  Aligned_cols=241  Identities=17%  Similarity=0.193  Sum_probs=173.5

Q ss_pred             ccEEEEEEccCCCEEEEEeCCCeEEEEECCCC----------cEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcc
Q 009993          143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG----------FSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAV  212 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~  212 (520)
                      ..|.+-+++|.+++|++|+.+|+|.+..+.+-          ..+-..++|..++..+.....+|++|+. |.|+-|...
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~   89 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWN   89 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeeh
Confidence            34556678999999999999999999988532          3445568999999999977888888775 999999886


Q ss_pred             cCcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCC
Q 009993          213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDT  287 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~  287 (520)
                      +.......-..-+...+...-...-..|+++..++  +-++.++.|+.++-||+++|+...+++ |.+.|.++.  ....
T Consensus        90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~  169 (325)
T KOG0649|consen   90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG  169 (325)
T ss_pred             hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence            54321000000000001111011224577777753  567777789999999999999999998 999999988  4455


Q ss_pred             EEEEEc-CCeEEEEECCCCeeeEEeecc--------c-ccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeee
Q 009993          288 TVASTS-GSDVYIWDTNSGCLLTVVNGA--------H-VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV  357 (520)
Q Consensus       288 ~l~~~~-d~~i~iwd~~~~~~~~~~~~~--------~-~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~  357 (520)
                      .+++|+ ||++++||.++++.+..+...        | ...|.+++.  +.+++++|+ ...+.+|.++..      .+.
T Consensus       170 qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrss------e~t  240 (325)
T KOG0649|consen  170 QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSS------EST  240 (325)
T ss_pred             ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCC------Cce
Confidence            666777 999999999999998887631        1 223555554  567888775 456999999988      333


Q ss_pred             eeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcc
Q 009993          358 ATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       358 ~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~  394 (520)
                      ..+ +-.++|..+.|..+.+++++..+.|.-|.+..-
T Consensus       241 ~vf-pipa~v~~v~F~~d~vl~~G~g~~v~~~~l~Gv  276 (325)
T KOG0649|consen  241 CVF-PIPARVHLVDFVDDCVLIGGEGNHVQSYTLNGV  276 (325)
T ss_pred             EEE-ecccceeEeeeecceEEEeccccceeeeeeccE
Confidence            333 335578889999999999999999999988753

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.82  E-value=3.5e-18  Score=148.47  Aligned_cols=268  Identities=18%  Similarity=0.202  Sum_probs=186.4

Q ss_pred             EEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCc--cccceEEeccCCCCeEEEEE---------cCCEEEEEecCC
Q 009993          189 AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE--KQNTQFRLWEHEGPITSLAL---------DLTRIYSGSWDM  257 (520)
Q Consensus       189 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~l~~---------~~~~l~s~s~dg  257 (520)
                      .++|||..|++-+.|..+++|++.......- ..+..  .......+ .....|...+|         +.+++++.+.|.
T Consensus        56 kWSPDGSciL~~sedn~l~~~nlP~dlys~~-~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~  133 (406)
T KOG2919|consen   56 KWSPDGSCILSLSEDNCLNCWNLPFDLYSKK-ADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ  133 (406)
T ss_pred             eeCCCCceEEeecccCeeeEEecChhhcccC-CCCccccccceeEEe-ccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence            5789999999999999999999754211000 00000  01111111 23456677776         236789999999


Q ss_pred             eEEEEECCCCcEEEEee---eccCE-----EEEeeCCCEEEEEcCCeEEEEEC-CCCeeeE---Ee---ecccccceEEE
Q 009993          258 TVRVWDRALLKCLKVLR---HSDWV-----YGLAPHDTTVASTSGSDVYIWDT-NSGCLLT---VV---NGAHVGNTKSL  322 (520)
Q Consensus       258 ~v~iwd~~~~~~~~~~~---~~~~v-----~~~~~~~~~l~~~~d~~i~iwd~-~~~~~~~---~~---~~~~~~~i~~l  322 (520)
                      -|++||.-+|+....+.   |.+.+     .+++++|..|++|....|++||+ +.|..-.   ++   +.+..+-+.++
T Consensus       134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~  213 (406)
T KOG2919|consen  134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCF  213 (406)
T ss_pred             ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeee
Confidence            99999999999888776   44444     34559999999999999999999 5553211   11   11346778999


Q ss_pred             EecCCC-CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEec--CCEEEEEeC-CCcEEEEeCCcccccC
Q 009993          323 ARSHTG-DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAG-DGKLSLIDVRKLLRSG  398 (520)
Q Consensus       323 ~~s~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-dg~i~vwd~~~~~~~~  398 (520)
                      +|+|.. ..+++|+....+-||.-...      .++..+.+|.+.|+.+.|.  ++.|++|+. |-.|..||++....  
T Consensus       214 a~sP~~~~~~a~gsY~q~~giy~~~~~------~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~--  285 (406)
T KOG2919|consen  214 AFSPMDSKTLAVGSYGQRVGIYNDDGR------RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD--  285 (406)
T ss_pred             eccCCCCcceeeecccceeeeEecCCC------CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc--
Confidence            999954 58999999999999988777      6788899999999999995  578888875 78899999997422  


Q ss_pred             CCCCCCceeeeeecCCCcccccCcce-----eeEEEEecCCEEEEecCCCeEEEEeCCc-hHhHHHHhhhhcccccchhh
Q 009993          399 RPTSGKRVSRVIEVEPPQRMLHGFEC-----NLLSVDIGADRIVCGGEEGIVRIWNFSQ-AFEIERRARALRGIRLENRM  472 (520)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~l~sg~~Dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~  472 (520)
                                      +.-.+..|..     --+.+++.++.|++|+.||.|++||+.. +.++.....          .
T Consensus       286 ----------------pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~----------~  339 (406)
T KOG2919|consen  286 ----------------PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN----------Y  339 (406)
T ss_pred             ----------------hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc----------c
Confidence                            2222222222     2456677788999999999999999987 432322211          1


Q ss_pred             hhccceeeeccCCCcccccc
Q 009993          473 RRRKLQTEMSSKGGRTDQCS  492 (520)
Q Consensus       473 ~~~~~~~~~s~~g~~~~~~s  492 (520)
                      ..-...++++|-=..+++++
T Consensus       340 sd~vNgvslnP~mpilatss  359 (406)
T KOG2919|consen  340 SDTVNGVSLNPIMPILATSS  359 (406)
T ss_pred             cccccceecCcccceeeecc
Confidence            22345666777644444444

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.81  E-value=3.6e-16  Score=138.66  Aligned_cols=232  Identities=16%  Similarity=0.193  Sum_probs=179.6

Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCc--EEEEEcccCccee
Q 009993          141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGF--IHCWRAVEVLPHL  218 (520)
Q Consensus       141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~--i~vwd~~~~~~~~  218 (520)
                      ....+..+.|+.+...|..|+.|| -++|+.+...........+..|...-....++|..+.+..  +++.+.+.+    
T Consensus         4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~----   78 (391)
T KOG2110|consen    4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKK----   78 (391)
T ss_pred             CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccC----
Confidence            345677888999999999999999 6888877655433333445566666677777777666543  788877543    


Q ss_pred             eeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee----eccCEEEEeeC--CCEEEEE
Q 009993          219 FDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR----HSDWVYGLAPH--DTTVAST  292 (520)
Q Consensus       219 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~----~~~~v~~~~~~--~~~l~~~  292 (520)
                                ....-.....+|.++.++.++|+++=.+. |+|||+++.+.++++.    +...+.+++++  +.+++--
T Consensus        79 ----------~~ICe~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp  147 (391)
T KOG2110|consen   79 ----------TTICEIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYP  147 (391)
T ss_pred             ----------ceEEEEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEec
Confidence                      22222234678999999999998888765 9999999999999886    44557777754  4466654


Q ss_pred             c---CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCe-EEEEEcccCccccceeeeeeecCC--cCC
Q 009993          293 S---GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA-IHMYEIINDCTEANVLLVATWIPH--TGP  366 (520)
Q Consensus       293 ~---d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~h--~~~  366 (520)
                      +   .|.|.+||..+-+++..+. .|.+++-+++|+++|.+|||+++.|+ ||||.+.++      ..+..++..  ...
T Consensus       148 ~s~t~GdV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G------~kl~eFRRG~~~~~  220 (391)
T KOG2110|consen  148 GSTTSGDVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG------QKLYEFRRGTYPVS  220 (391)
T ss_pred             CCCCCceEEEEEcccceeeeEEE-ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc------cEeeeeeCCceeeE
Confidence            4   4899999999999999998 79999999999999999999999998 799999998      455555543  346


Q ss_pred             EEEEEecC--CEEEEEeCCCcEEEEeCCccc
Q 009993          367 VNSLAFEF--PWLVSAAGDGKLSLIDVRKLL  395 (520)
Q Consensus       367 v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~  395 (520)
                      |.+++|++  ++|++.|..++|.|+.+..-.
T Consensus       221 IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  221 IYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            88999976  699999999999999998643

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.80  E-value=1.7e-19  Score=174.70  Aligned_cols=277  Identities=19%  Similarity=0.257  Sum_probs=203.7

Q ss_pred             HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR  210 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd  210 (520)
                      +.++.|.||..+|+|+.|...|.++++|+.|..|+||.++++.++....+|...++.++  .++.++++++.|..|++|.
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence            45788999999999999999999999999999999999999999999999999999887  5666889999999999999


Q ss_pred             cccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee------eccCEEEEe-
Q 009993          211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR------HSDWVYGLA-  283 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~------~~~~v~~~~-  283 (520)
                      +.++.             ++..+.+|++.|++++|.+..  +.+.||++++||.+ ...+....      ..+-+.++. 
T Consensus       261 l~~~~-------------pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~  324 (1113)
T KOG0644|consen  261 LPDGA-------------PVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILF  324 (1113)
T ss_pred             cCCCc-------------hHHHHhccccceeeeccCccc--cCCCCCceEecccc-ccccccCCCCCCcccccceeeeec
Confidence            98863             566788999999999998755  88899999999987 22211111      222333333 


Q ss_pred             -eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCC-CCEEEEEeCCCeEEEEEcccCccccceeeeeee
Q 009993          284 -PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT-GDFLFTGGEDGAIHMYEIINDCTEANVLLVATW  360 (520)
Q Consensus       284 -~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~  360 (520)
                       ..+.-+.+++ |+.-..|......       .+...+.-+.++.+ ..+.+++-.+-.+.+|++.++      .....+
T Consensus       325 ~~~~~~f~Tgs~d~ea~n~e~~~l~-------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g------~l~H~l  391 (1113)
T KOG0644|consen  325 ENNGDRFLTGSRDGEARNHEFEQLA-------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG------QLLHNL  391 (1113)
T ss_pred             cccccccccccCCcccccchhhHhh-------hhccceEEEeccccccccceeeeeeeEeeeeecccc------hhhhhh
Confidence             5566677777 7776666543211       11111112222212 245667777888999999999      678888


Q ss_pred             cCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceee-EEEEecCCEE
Q 009993          361 IPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL-LSVDIGADRI  436 (520)
Q Consensus       361 ~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~l  436 (520)
                      .+|...+..+.++|   ....+++.||...|||+-.+...                  .....+|...+ -.++.+|..+
T Consensus       392 ~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi------------------k~y~~gh~kl~d~kFSqdgts~  453 (1113)
T KOG0644|consen  392 MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI------------------KHYFIGHGKLVDGKFSQDGTSI  453 (1113)
T ss_pred             cccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcc------------------eeeecccceeeccccCCCCceE
Confidence            89999999999965   67889999999999999875322                  11122333222 2344555677


Q ss_pred             EEecCCCeEEEEeCCchHhH
Q 009993          437 VCGGEEGIVRIWNFSQAFEI  456 (520)
Q Consensus       437 ~sg~~Dg~v~iwd~~~~~~~  456 (520)
                      +....-|.++|.....+...
T Consensus       454 ~lsd~hgql~i~g~gqs~s~  473 (1113)
T KOG0644|consen  454 ALSDDHGQLYILGTGQSKSQ  473 (1113)
T ss_pred             ecCCCCCceEEeccCCCccc
Confidence            77777888888877665543

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.80  E-value=1.3e-18  Score=146.94  Aligned_cols=277  Identities=17%  Similarity=0.204  Sum_probs=188.4

Q ss_pred             hhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC-CCCceEEEEe-cCCCEEEEEeCCCcEEEEEccc
Q 009993          136 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVE  213 (520)
Q Consensus       136 ~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~  213 (520)
                      -.|++|.+.|+++.|..+++ |.+|..-|.|++|++.+......+. .+...|+.+. -.+..+.+-+.|+.+.+|++..
T Consensus         8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~   86 (323)
T KOG0322|consen    8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAY   86 (323)
T ss_pred             eEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccC
Confidence            45779999999999987665 9999999999999999998888888 5667777776 3347889999999999999865


Q ss_pred             CcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCC-e-----------EEEEECCCCcEEEEee-----ec
Q 009993          214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDM-T-----------VRVWDRALLKCLKVLR-----HS  276 (520)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg-~-----------v~iwd~~~~~~~~~~~-----~~  276 (520)
                      +.                ....|.-.++++.|..--+...+... .           +.+-|......+....     ..
T Consensus        87 s~----------------~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Kl  150 (323)
T KOG0322|consen   87 SA----------------FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKL  150 (323)
T ss_pred             cc----------------eEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhcccc
Confidence            32                11123344445555322222222211 1           1222221111122111     34


Q ss_pred             cCEEEEe---eCC-C-EEEEEc-CCeEEEEECCCCeeeEEee---------cccccceEEEEecCCCCEEEEEeCCCeEE
Q 009993          277 DWVYGLA---PHD-T-TVASTS-GSDVYIWDTNSGCLLTVVN---------GAHVGNTKSLARSHTGDFLFTGGEDGAIH  341 (520)
Q Consensus       277 ~~v~~~~---~~~-~-~l~~~~-d~~i~iwd~~~~~~~~~~~---------~~~~~~i~~l~~s~~~~~l~tg~~dg~i~  341 (520)
                      +.+++..   ..+ . ++++|. +|.+.+||+.++..+..++         ..|..+|.++.|.+.-..=++|+.+..+.
T Consensus       151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~  230 (323)
T KOG0322|consen  151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV  230 (323)
T ss_pred             CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence            5666666   222 2 344555 8999999999984333222         24888999999988666667888888999


Q ss_pred             EEEcccCccccceeeeeeecCCcCCEEEEEe--cCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc
Q 009993          342 MYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML  419 (520)
Q Consensus       342 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (520)
                      .|++......-+.....++.  .-.|..+..  +++.+++++.|+.|+||..++                   ..+..++
T Consensus       231 ~~Sl~~s~gslq~~~e~~lk--npGv~gvrIRpD~KIlATAGWD~RiRVyswrt-------------------l~pLAVL  289 (323)
T KOG0322|consen  231 MYSLNHSTGSLQIRKEITLK--NPGVSGVRIRPDGKILATAGWDHRIRVYSWRT-------------------LNPLAVL  289 (323)
T ss_pred             eeeeccccCcccccceEEec--CCCccceEEccCCcEEeecccCCcEEEEEecc-------------------CCchhhh
Confidence            99987652111111222222  223444444  678999999999999999998                   4556677


Q ss_pred             cCcceeeEEEEecCC--EEEEecCCCeEEEEeC
Q 009993          420 HGFECNLLSVDIGAD--RIVCGGEEGIVRIWNF  450 (520)
Q Consensus       420 ~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~  450 (520)
                      .-|...|.+++|+++  .+|++|.|++|.+|++
T Consensus       290 kyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  290 KYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            888888988888876  9999999999999986

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=7.8e-19  Score=160.53  Aligned_cols=291  Identities=19%  Similarity=0.192  Sum_probs=214.3

Q ss_pred             HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC-CCCceEEE--Ee--cCCCEEEEEeCCCcEE
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRA--VA--ADKKLLVAGGTDGFIH  207 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~-~~~~~v~~--~~--~~~~~l~sg~~dg~i~  207 (520)
                      .+...|.+|.+.|..|.|+..|..|++||.|..|.+||...+.....+. +|...|..  |-  .+...+++.+.||.++
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR  212 (559)
T ss_pred             hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence            4467789999999999999999999999999999999999998877765 67665543  22  3456799999999999


Q ss_pred             EEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcEEEEee----ecc---
Q 009993          208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR----HSD---  277 (520)
Q Consensus       208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~----~~~---  277 (520)
                      +=.+...          ........+..|.++|..++.   ++..|++++.|+.+.-+|+++......+.    +..   
T Consensus       213 ~s~i~~t----------~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v  282 (559)
T KOG1334|consen  213 VSEILET----------GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERV  282 (559)
T ss_pred             eeeeccc----------cceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccce
Confidence            8765332          123345667789999999999   55779999999999999998876544442    222   


Q ss_pred             CEEEEe--e-CCCEEEEEc-CCeEEEEECCCCee------eEEeec-----ccccceEEEEecCCCCEEEEEeCCCeEEE
Q 009993          278 WVYGLA--P-HDTTVASTS-GSDVYIWDTNSGCL------LTVVNG-----AHVGNTKSLARSHTGDFLFTGGEDGAIHM  342 (520)
Q Consensus       278 ~v~~~~--~-~~~~l~~~~-d~~i~iwd~~~~~~------~~~~~~-----~~~~~i~~l~~s~~~~~l~tg~~dg~i~i  342 (520)
                      ...+++  | +...+++++ |..+++||.+.-..      +..+..     ...-.|++++|+.++.-+.++..|-.|++
T Consensus       283 ~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYL  362 (559)
T KOG1334|consen  283 GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYL  362 (559)
T ss_pred             eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEE
Confidence            334454  3 344677777 89999999875322      222221     23457999999988888888888989999


Q ss_pred             EEcccCcc--ccce----eee-eeecCCcC--CEEEEEe-cC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeee
Q 009993          343 YEIINDCT--EANV----LLV-ATWIPHTG--PVNSLAF-EF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVI  410 (520)
Q Consensus       343 wd~~~~~~--~~~~----~~~-~~~~~h~~--~v~~l~~-~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  410 (520)
                      |.-..+.-  +...    ..+ ..+++|..  .|..+.| .|  .++++|+.-|.|.||+-.+                 
T Consensus       363 F~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t-----------------  425 (559)
T KOG1334|consen  363 FNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT-----------------  425 (559)
T ss_pred             eccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch-----------------
Confidence            95433211  0000    112 23678854  5778888 33  6999999999999999987                 


Q ss_pred             ecCCCcccccCcceeeEEEEecCC--EEEEecCCCeEEEEeCCc
Q 009993          411 EVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQ  452 (520)
Q Consensus       411 ~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~  452 (520)
                        ...++.+.+-...|.|+.+++.  .||+.|-|.-|+||.-.+
T Consensus       426 --~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  426 --GEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT  467 (559)
T ss_pred             --hHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence              3445555665558899999887  999999999999998743

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=2.6e-17  Score=137.56  Aligned_cols=238  Identities=20%  Similarity=0.244  Sum_probs=171.1

Q ss_pred             EEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCc
Q 009993          189 AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLK  268 (520)
Q Consensus       189 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~  268 (520)
                      +++|.+++|++|..+|.|.+..+.+-....-   .+.....+....+|.++|..++|....|++|+. |.|+-|..+...
T Consensus        17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa---~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~   92 (325)
T KOG0649|consen   17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSA---EPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEE   92 (325)
T ss_pred             hhCCcceEEEEecCCCeEEEEEehhhhcccc---CCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhh
Confidence            5678999999999999999998865321111   122334556668999999999999888888885 999999865432


Q ss_pred             E------EEEee---e-----ccCEEEEe--eC-CCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEE
Q 009993          269 C------LKVLR---H-----SDWVYGLA--PH-DTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFL  331 (520)
Q Consensus       269 ~------~~~~~---~-----~~~v~~~~--~~-~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l  331 (520)
                      .      +....   +     -..|+++.  |. +..+.+|+|+.++-||+++|+..+.+. +|...+.++.--.....+
T Consensus        93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~qi  171 (325)
T KOG0649|consen   93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQI  171 (325)
T ss_pred             hhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-CCcceeeeeeecccCcce
Confidence            2      11111   2     23456655  44 445556669999999999999999997 799999999985556678


Q ss_pred             EEEeCCCeEEEEEcccCccccceee---eeeecCCc-CCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCcee
Q 009993          332 FTGGEDGAIHMYEIINDCTEANVLL---VATWIPHT-GPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVS  407 (520)
Q Consensus       332 ~tg~~dg~i~iwd~~~~~~~~~~~~---~~~~~~h~-~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  407 (520)
                      ++|++||++++||.++++....+.+   ...+.+|. ..|.+++-+.++|++|+.- .+.+|.++...            
T Consensus       172 lsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp-~lslwhLrsse------------  238 (325)
T KOG0649|consen  172 LSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP-KLSLWHLRSSE------------  238 (325)
T ss_pred             eecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC-ceeEEeccCCC------------
Confidence            9999999999999999843211111   11122333 3588999999999998754 69999999732            


Q ss_pred             eeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCc
Q 009993          408 RVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQ  452 (520)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~  452 (520)
                             +..++ .....+-.+.|..+.++++|....|.-|.+..
T Consensus       239 -------~t~vf-pipa~v~~v~F~~d~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  239 -------STCVF-PIPARVHLVDFVDDCVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             -------ceEEE-ecccceeEeeeecceEEEeccccceeeeeecc
Confidence                   11111 12244667788889999999888999998764

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.79  E-value=6.4e-18  Score=153.45  Aligned_cols=284  Identities=18%  Similarity=0.197  Sum_probs=192.7

Q ss_pred             EEEEeCCCCceEEEEe--cCC--CEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCC
Q 009993          176 SIASSKPLGCTIRAVA--ADK--KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLT  248 (520)
Q Consensus       176 ~~~~~~~~~~~v~~~~--~~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~  248 (520)
                      .....+.+...|.++.  |..  +.+++|+..|.|-+||+.+.+         ........+..|.++|.+|.|   +..
T Consensus       178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~---------~d~d~v~~f~~hs~~Vs~l~F~P~n~s  248 (498)
T KOG4328|consen  178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE---------KDKDGVYLFTPHSGPVSGLKFSPANTS  248 (498)
T ss_pred             ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC---------CccCceEEeccCCccccceEecCCChh
Confidence            3334445555665554  443  588999999999999996332         223456677889999999999   557


Q ss_pred             EEEEEecCCeEEEEECCCCcEEEEee---eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCee-eEEeecccccceEE
Q 009993          249 RIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCL-LTVVNGAHVGNTKS  321 (520)
Q Consensus       249 ~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~-~~~~~~~~~~~i~~  321 (520)
                      .+++.|.||+|+.-|+++...-..+.   ......++.  .+...++.+. =|...+||++++.. ...+. -|...|.+
T Consensus       249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~-lh~kKI~s  327 (498)
T KOG4328|consen  249 QIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR-LHKKKITS  327 (498)
T ss_pred             heeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh-hhhcccce
Confidence            89999999999999998764433333   222333333  3444444444 46999999998765 33333 58889999


Q ss_pred             EEecCCC-CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccC
Q 009993          322 LARSHTG-DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSG  398 (520)
Q Consensus       322 l~~s~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~  398 (520)
                      ++++|.. .+|+|++.|++.+|||++.-.....  +......|...|.+..|+|  ..|++.+.|..|+|||..-.....
T Consensus       328 v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~  405 (498)
T KOG4328|consen  328 VALNPVCPWFLATASLDQTAKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKD  405 (498)
T ss_pred             eecCCCCchheeecccCcceeeeehhhhcCCCC--cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccC
Confidence            9999954 5789999999999999988654332  2445568999999999987  469999999999999985110000


Q ss_pred             CCCCCCceeeeeecCCCcccccCc----ceee--EEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhh
Q 009993          399 RPTSGKRVSRVIEVEPPQRMLHGF----ECNL--LSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRM  472 (520)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~v--~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  472 (520)
                                    .+...+.|.+    ....  ..|.|+..++++|-.-..|-|+|-..++.+.++..+..        
T Consensus       406 --------------~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~--------  463 (498)
T KOG4328|consen  406 --------------EPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPES--------  463 (498)
T ss_pred             --------------CccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccc--------
Confidence                          1111111111    1112  24455556999999999999999988876665433321        


Q ss_pred             hhccceeeeccCCCccccccc
Q 009993          473 RRRKLQTEMSSKGGRTDQCSV  493 (520)
Q Consensus       473 ~~~~~~~~~s~~g~~~~~~s~  493 (520)
                      ..-....+|+|-+..+++++-
T Consensus       464 ~tI~~vn~~HP~~~~~~aG~~  484 (498)
T KOG4328|consen  464 STIPSVNEFHPMRDTLAAGGN  484 (498)
T ss_pred             cccccceeecccccceeccCC
Confidence            011345678888876666553

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.6e-17  Score=143.98  Aligned_cols=272  Identities=15%  Similarity=0.181  Sum_probs=184.8

Q ss_pred             ceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEE
Q 009993          185 CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVW  262 (520)
Q Consensus       185 ~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iw  262 (520)
                      .....|++.|.+||+|+.||.|.+||+.|.             .....+.+|..+|++++|  +|..|+++|.|..|.+|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-------------~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lw   92 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF-------------RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLW   92 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEcccc-------------chhhhhhccccceeEEEecCCCCEeeeecCCceeEEE
Confidence            556677899999999999999999999774             245567789999999999  89999999999999999


Q ss_pred             ECCCCcEEEEeeeccCEEEEe--eCC-CEEEEEc-CCeEEEEECCCCeeeEEeeccc----ccceEEEEecCCCCEEEEE
Q 009993          263 DRALLKCLKVLRHSDWVYGLA--PHD-TTVASTS-GSDVYIWDTNSGCLLTVVNGAH----VGNTKSLARSHTGDFLFTG  334 (520)
Q Consensus       263 d~~~~~~~~~~~~~~~v~~~~--~~~-~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~----~~~i~~l~~s~~~~~l~tg  334 (520)
                      |+..|.+++.++...+|+...  |.. +.++++- +..-.+.+...+... .+....    .....+..|.+.|+++++|
T Consensus        93 Dl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitG  171 (405)
T KOG1273|consen   93 DLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITG  171 (405)
T ss_pred             eccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEe
Confidence            999999999999999999887  332 3333333 555555555442211 111111    1122334688999999999


Q ss_pred             eCCCeEEEEEcccCccccceeeeeeecCCc-CCEEEEEec--CCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeee
Q 009993          335 GEDGAIHMYEIINDCTEANVLLVATWIPHT-GPVNSLAFE--FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE  411 (520)
Q Consensus       335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  411 (520)
                      ...|.+.++|..+.      +++..++-.. ..|..+.++  ++.|+.-+.|..|+.|+++......+-..-.      .
T Consensus       172 tsKGkllv~~a~t~------e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e------~  239 (405)
T KOG1273|consen  172 TSKGKLLVYDAETL------ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVE------P  239 (405)
T ss_pred             cCcceEEEEecchh------eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcC------h
Confidence            99999999999988      6676665544 677777774  6899999999999999998532221100000      0


Q ss_pred             cCCCcccccCcceeeEEEEecCCEEEEec-CCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccc
Q 009993          412 VEPPQRMLHGFECNLLSVDIGADRIVCGG-EEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQ  490 (520)
Q Consensus       412 ~~~~~~~~~~~~~~v~~~~~~~~~l~sg~-~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~  490 (520)
                      ....+-+.....-...+++-+|.+++.|+ .-..++||.-..|..++-+.....         .....+.+.|--..+++
T Consensus       240 ~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg---------E~l~DV~whp~rp~i~s  310 (405)
T KOG1273|consen  240 EHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG---------EELLDVNWHPVRPIIAS  310 (405)
T ss_pred             hHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch---------hheeecccccceeeeee
Confidence            00111111122223445555666766665 456899999999887765433321         22345566665555544


Q ss_pred             c
Q 009993          491 C  491 (520)
Q Consensus       491 ~  491 (520)
                      .
T Consensus       311 i  311 (405)
T KOG1273|consen  311 I  311 (405)
T ss_pred             c
Confidence            3

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.79  E-value=4.2e-18  Score=148.33  Aligned_cols=249  Identities=16%  Similarity=0.192  Sum_probs=181.1

Q ss_pred             HHHhhhhh--ccccccEEEEEEccC----CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--c-CCCEEEEEe
Q 009993          131 WKELIDVL--YGHTEAVLTVFVLAS----AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--A-DKKLLVAGG  201 (520)
Q Consensus       131 W~~~~~~l--~~h~~~V~~l~~~~~----~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~sg~  201 (520)
                      |-.+++..  ..|....+.++|+-+    ..++|.|+.-|.|+|.|+.+++....+.+|+..|..+.  | +.++++++|
T Consensus        76 ~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~S  155 (385)
T KOG1034|consen   76 GIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSAS  155 (385)
T ss_pred             ceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEec
Confidence            43444443  247788888999854    45899999999999999999999999999999998876  3 557999999


Q ss_pred             CCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEE--------
Q 009993          202 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLK--------  271 (520)
Q Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~--------  271 (520)
                      .|..|++|++++....          ....-+.+|.+.|.++.|  ++.++++++.|.++++|++...+...        
T Consensus       156 kD~svRlwnI~~~~Cv----------~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~  225 (385)
T KOG1034|consen  156 KDHSVRLWNIQTDVCV----------AVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITY  225 (385)
T ss_pred             CCceEEEEeccCCeEE----------EEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhccc
Confidence            9999999999886421          112234689999999999  78999999999999999987332110        


Q ss_pred             -----------------Ee----eeccCEEEEeeCCCEEEEEc-CCeEEEEEC-CCCee-------------eEEeeccc
Q 009993          272 -----------------VL----RHSDWVYGLAPHDTTVASTS-GSDVYIWDT-NSGCL-------------LTVVNGAH  315 (520)
Q Consensus       272 -----------------~~----~~~~~v~~~~~~~~~l~~~~-d~~i~iwd~-~~~~~-------------~~~~~~~~  315 (520)
                                       .+    .|...|-|+..-|+++++-+ ++.|..|.+ +-++.             +..+. -.
T Consensus       226 ~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~-~~  304 (385)
T KOG1034|consen  226 SPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD-YP  304 (385)
T ss_pred             CCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec-cC
Confidence                             01    04555555666678888877 899999988 22222             11121 12


Q ss_pred             ccceEE--EEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe--cCCEEEEEeCCCcEEEEeC
Q 009993          316 VGNTKS--LARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDV  391 (520)
Q Consensus       316 ~~~i~~--l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~  391 (520)
                      ...|+-  .+|.|-++.||.|...|.|++||++...+........  ......|+..+|  ++..|+...+|++|.-||.
T Consensus       305 ~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~--s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  305 MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTH--SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             ccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEe--ccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            233444  4556778899999999999999999886432222221  122456777777  4689999999999999986


Q ss_pred             C
Q 009993          392 R  392 (520)
Q Consensus       392 ~  392 (520)
                      .
T Consensus       383 v  383 (385)
T KOG1034|consen  383 V  383 (385)
T ss_pred             e
Confidence            4

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.79  E-value=5e-17  Score=145.64  Aligned_cols=289  Identities=22%  Similarity=0.279  Sum_probs=196.4

Q ss_pred             cccEEEEEEccCCC-EEEEEeCCCeEEEEECCCCc---------EEEEeCCCCceEEEE--ecCCCEEEEEeCCCcEEEE
Q 009993          142 TEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGF---------SIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCW  209 (520)
Q Consensus       142 ~~~V~~l~~~~~~~-~l~sgs~dg~v~vwd~~~~~---------~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vw  209 (520)
                      ..+|..+.|.+++. .++||+.|..|++|.+..+.         .+..+..|...|.++  +++|++|++|+.+|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            46899999998765 99999999999999886442         234556777766655  5899999999999999999


Q ss_pred             EcccCcceeeeccC-----CccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEE
Q 009993          210 RAVEVLPHLFDISG-----SEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYG  281 (520)
Q Consensus       210 d~~~~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~  281 (520)
                      ....-.  +++...     .+.......+.+|...|..++|  ++.++++++.|.++++||+..|+....+. |...+..
T Consensus        93 k~~~~~--~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg  170 (434)
T KOG1009|consen   93 KQGDVR--IFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQG  170 (434)
T ss_pred             EecCcC--CccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccce
Confidence            865311  111111     2334456677889999999999  88999999999999999999999999887 8888887


Q ss_pred             Ee--eCCCEEEEEc-CCeEEEEECCCCeeeEEee---------c---------ccc----cceEEEEecCCCCEEEEEeC
Q 009993          282 LA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVN---------G---------AHV----GNTKSLARSHTGDFLFTGGE  336 (520)
Q Consensus       282 ~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~---------~---------~~~----~~i~~l~~s~~~~~l~tg~~  336 (520)
                      ++  |.++++++-+ |...+.+++...+.+....         .         -|.    .-...++|+|+|.++++.+.
T Consensus       171 vawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag  250 (434)
T KOG1009|consen  171 VAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG  250 (434)
T ss_pred             eecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence            77  7778888766 7666666655433322111         0         011    12456789999999987532


Q ss_pred             ----CC-----eEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-------------------CEEEEEeCCCcEEE
Q 009993          337 ----DG-----AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-------------------PWLVSAAGDGKLSL  388 (520)
Q Consensus       337 ----dg-----~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-------------------~~l~s~s~dg~i~v  388 (520)
                          .+     +.++|+-..-.     .+...+..-..++..+.|+|                   +.++.......|.|
T Consensus       251 ~~~~g~~~~~n~tYvfsrk~l~-----rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyv  325 (434)
T KOG1009|consen  251 LFKVGGGVFRNTSYVFSRKDLK-----RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYV  325 (434)
T ss_pred             eeeeCCceeeceeEeecccccc-----CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEE
Confidence                22     23455433222     33444444455555555533                   23344444558999


Q ss_pred             EeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEec--CCEEEEecCCCeEEEEeCCchHh
Q 009993          389 IDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQAFE  455 (520)
Q Consensus       389 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~~~~~  455 (520)
                      ||..+.                  .+....-.-|-..++.++|+  +..++..+.||...+-.++..+.
T Consensus       326 ydtq~~------------------~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  326 YDTQTL------------------EPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             eccccc------------------cceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence            998874                  22222223344555555555  45999999999998888876544

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=2e-18  Score=173.45  Aligned_cols=234  Identities=17%  Similarity=0.165  Sum_probs=181.9

Q ss_pred             cEEEEEEccCCCE----EEEEeCCCeEEEEECCC---C---cEEEEeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEE
Q 009993          144 AVLTVFVLASAKL----LFTSGYDSIVRMWHLED---G---FSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWR  210 (520)
Q Consensus       144 ~V~~l~~~~~~~~----l~sgs~dg~v~vwd~~~---~---~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd  210 (520)
                      +.+.++|.+.|..    |+.|..||.|.+||...   +   ..+.+...|.+.|..+.   ..++.|++|+.||.|.|||
T Consensus        66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD  145 (1049)
T KOG0307|consen   66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD  145 (1049)
T ss_pred             cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence            4578888876654    88999999999999865   2   34566788999999887   4566999999999999999


Q ss_pred             cccCcceeeeccCCccccceEEeccCCCCeEEEEEcC---CEEEEEecCCeEEEEECCCCcEEEEee-ecc--CEEEEe-
Q 009993          211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL---TRIYSGSWDMTVRVWDRALLKCLKVLR-HSD--WVYGLA-  283 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~--~v~~~~-  283 (520)
                      +...... +..        .  -....+.|.+++|+.   ..|++++.+|.+.|||++..+.+-.+. +..  .+..+. 
T Consensus       146 lnn~~tP-~~~--------~--~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~W  214 (1049)
T KOG0307|consen  146 LNKPETP-FTP--------G--SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAW  214 (1049)
T ss_pred             cCCcCCC-CCC--------C--CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeee
Confidence            9763210 000        0  123467899999944   679999999999999999888777776 333  244455 


Q ss_pred             -eC-CCEEEEEc-C---CeEEEEECCCCe-eeEEeecccccceEEEEecCCC-CEEEEEeCCCeEEEEEcccCcccccee
Q 009993          284 -PH-DTTVASTS-G---SDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEANVL  355 (520)
Q Consensus       284 -~~-~~~l~~~~-d---~~i~iwd~~~~~-~~~~~~~~~~~~i~~l~~s~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~  355 (520)
                       |+ ...+++++ |   -.|.+||++.-. +++++ .+|...|.++.|++.+ .++++++.|+.|.+|+.+++      +
T Consensus       215 hP~~aTql~~As~dd~~PviqlWDlR~assP~k~~-~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg------E  287 (1049)
T KOG0307|consen  215 HPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL-EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG------E  287 (1049)
T ss_pred             CCCCceeeeeecCCCCCceeEeecccccCCchhhh-cccccceeeeccCCCCchhhhcccCCCCeeEecCCCc------e
Confidence             33 34555555 3   359999998754 45555 4799999999999966 88999999999999999999      7


Q ss_pred             eeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCccc
Q 009993          356 LVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLL  395 (520)
Q Consensus       356 ~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~  395 (520)
                      .+..+......+..+.|.|   ..+++++-||.|.|+.+....
T Consensus       288 vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  288 VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             EeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            7888888888999999954   699999999999999998753

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.77  E-value=8.4e-17  Score=162.48  Aligned_cols=263  Identities=14%  Similarity=0.166  Sum_probs=177.9

Q ss_pred             ccHH---HhhhhhccccccEEEEEEccCC-CEEEEEeCCCeEEEEECCCC-------cEEEEeCCCCceE--EEEecCCC
Q 009993          129 KSWK---ELIDVLYGHTEAVLTVFVLASA-KLLFTSGYDSIVRMWHLEDG-------FSIASSKPLGCTI--RAVAADKK  195 (520)
Q Consensus       129 ~~W~---~~~~~l~~h~~~V~~l~~~~~~-~~l~sgs~dg~v~vwd~~~~-------~~~~~~~~~~~~v--~~~~~~~~  195 (520)
                      .-|+   .++..|..|...|..++.++.. .+++|||.||+|++||...-       +...++...+..+  ..+.+.++
T Consensus      1032 ~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1032 PGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred             CCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence            3377   6788999999999999998754 99999999999999998532       2223333333444  44458999


Q ss_pred             EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccC-CCCeEEE-EE---cCC-EEEEEecCCeEEEEECCCCcE
Q 009993          196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH-EGPITSL-AL---DLT-RIYSGSWDMTVRVWDRALLKC  269 (520)
Q Consensus       196 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l-~~---~~~-~l~s~s~dg~v~iwd~~~~~~  269 (520)
                      .+|.|+.||.|.+.++..........      ........+ .+.+.++ ++   ... .++.+...+.|..||+++...
T Consensus      1112 ~~Av~t~DG~v~~~~id~~~~~~~~~------~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVA------TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred             eEEEEcCCCeEEEEEcccccccccee------eeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh
Confidence            99999999999999986531111100      011111111 2334443 33   334 688888889999999998877


Q ss_pred             EEEee---eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCC---CEEEE-Ee-CCC
Q 009993          270 LKVLR---HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG---DFLFT-GG-EDG  338 (520)
Q Consensus       270 ~~~~~---~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~---~~l~t-g~-~dg  338 (520)
                      ...++   ..+.|+++.  +.+++++.|+ .|.+.+||++-+.++.....++..+++.+..+|-.   ...++ |+ ..+
T Consensus      1186 ~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1186 AWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred             HHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCC
Confidence            66665   456677766  8889999999 89999999999999988887778889988887733   34444 44 467


Q ss_pred             eEEEEEcccCccccceee------eeeec-------CCcCCEEEEEe-c-CCEEEEEeCCCcEEEEeCCccccc
Q 009993          339 AIHMYEIINDCTEANVLL------VATWI-------PHTGPVNSLAF-E-FPWLVSAAGDGKLSLIDVRKLLRS  397 (520)
Q Consensus       339 ~i~iwd~~~~~~~~~~~~------~~~~~-------~h~~~v~~l~~-~-~~~l~s~s~dg~i~vwd~~~~~~~  397 (520)
                      .|.+|++.++........      +....       .+.-......+ + ...+.+|+.|..|+.||.......
T Consensus      1266 evs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             ceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence            899999998843111000      00000       11111111222 2 368999999999999999865443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.77  E-value=3.6e-15  Score=148.16  Aligned_cols=283  Identities=28%  Similarity=0.466  Sum_probs=211.4

Q ss_pred             hhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc-EEEEeCCCCc-eEE--EE-ecCCC-EEEEEeC-CCcEEE
Q 009993          136 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF-SIASSKPLGC-TIR--AV-AADKK-LLVAGGT-DGFIHC  208 (520)
Q Consensus       136 ~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~-~~~~~~~~~~-~v~--~~-~~~~~-~l~sg~~-dg~i~v  208 (520)
                      ..+.+|...|.++.+.+.+..++.++.|+.+.+|+...+. .+..+..+.. .+.  .+ .+++. .++..+. |+.+.+
T Consensus        59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  138 (466)
T COG2319          59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL  138 (466)
T ss_pred             heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence            3567999999999999999999999999999999998886 6666665322 222  23 45666 4555444 999999


Q ss_pred             EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec-CCeEEEEECCCCcEEEEee-eccCEEEEe-
Q 009993          209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDRALLKCLKVLR-HSDWVYGLA-  283 (520)
Q Consensus       209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~-~~~~v~~~~-  283 (520)
                      |+....            ......+..|...|..+++  ++..+++++. |+.+++|+...+..+..+. |...|.++. 
T Consensus       139 ~~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  206 (466)
T COG2319         139 WDLSTP------------GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF  206 (466)
T ss_pred             EEecCC------------CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEE
Confidence            998651            2355677889999999999  5567888875 9999999999888887777 788898888 


Q ss_pred             -eCCC-EEEEEc-CCeEEEEECCCCeeeE-EeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeee
Q 009993          284 -PHDT-TVASTS-GSDVYIWDTNSGCLLT-VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT  359 (520)
Q Consensus       284 -~~~~-~l~~~~-d~~i~iwd~~~~~~~~-~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~  359 (520)
                       +++. .+++++ |+.|++||...+.... .+. +|.... ...|+|++.++++++.|+.+++|+......     ....
T Consensus       207 ~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-----~~~~  279 (466)
T COG2319         207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS-GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-----LLRT  279 (466)
T ss_pred             cCCcceEEEEecCCCcEEEEECCCCcEEeeecC-CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-----EEEE
Confidence             6666 555535 8999999999887777 454 577665 448999998999999999999999987742     1333


Q ss_pred             ecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC--CE
Q 009993          360 WIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DR  435 (520)
Q Consensus       360 ~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~  435 (520)
                      +.+|...|.++.|+|  ..+++++.|+.+.+||..+.......            .     ...|...+..+.+..  ..
T Consensus       280 ~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------------~-----~~~~~~~~~~~~~~~~~~~  342 (466)
T COG2319         280 LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL------------T-----LKGHEGPVSSLSFSPDGSL  342 (466)
T ss_pred             EecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEe------------e-----ecccCCceEEEEECCCCCE
Confidence            367889999999987  67888999999999988764221110            0     123443445554421  35


Q ss_pred             EEEe-cCCCeEEEEeCCchH
Q 009993          436 IVCG-GEEGIVRIWNFSQAF  454 (520)
Q Consensus       436 l~sg-~~Dg~v~iwd~~~~~  454 (520)
                      ++.+ ..|+.+++|+.....
T Consensus       343 ~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         343 LVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             EEEeecCCCcEEeeecCCCc
Confidence            5555 688999999998775

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.1e-16  Score=142.48  Aligned_cols=296  Identities=13%  Similarity=0.129  Sum_probs=202.6

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCC------CcEEEEeC-CCCceEEEEe--cCCCEEEEEeCCCc
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED------GFSIASSK-PLGCTIRAVA--ADKKLLVAGGTDGF  205 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~------~~~~~~~~-~~~~~v~~~~--~~~~~l~sg~~dg~  205 (520)
                      .+.+.+|.+.|.++.|+.++++|++|+.|..+++|+++.      .+++.... .|...|.|+.  ..+.++++|..+++
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT  128 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence            455789999999999999999999999999999999853      34444433 4567888877  56779999999999


Q ss_pred             EEEEEcccCcceeeeccCCccccceEEeccC---CCCeEEEEE--cCCEEEEEecCCeEEEEECCCCc-EEEE---eeec
Q 009993          206 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEH---EGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK-CLKV---LRHS  276 (520)
Q Consensus       206 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~-~~~~---~~~~  276 (520)
                      |..-|+++..              ......|   .+.|..+..  ..+.+++.+.+|.|.+||.+... .+..   -..+
T Consensus       129 VI~HDiEt~q--------------si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~  194 (609)
T KOG4227|consen  129 VIKHDIETKQ--------------SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSG  194 (609)
T ss_pred             eEeeecccce--------------eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCC
Confidence            9999998753              1222234   348888887  44889999999999999998654 2111   1223


Q ss_pred             cCEEEEe---eCCCEEEEEc-CCeEEEEECCCCeee-EEee--ccc---ccceEEEEecCCCCEEEEEeCCCeEEEEEcc
Q 009993          277 DWVYGLA---PHDTTVASTS-GSDVYIWDTNSGCLL-TVVN--GAH---VGNTKSLARSHTGDFLFTGGEDGAIHMYEII  346 (520)
Q Consensus       277 ~~v~~~~---~~~~~l~~~~-d~~i~iwd~~~~~~~-~~~~--~~~---~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~  346 (520)
                      ....++.   ....+|++.+ .+.+-+||.+..+.. ....  .+-   ...-.++.|+|+|..+.+--....-.+||+-
T Consensus       195 ~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~  274 (609)
T KOG4227|consen  195 KNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFI  274 (609)
T ss_pred             ccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeee
Confidence            3333333   3456777777 688999999875432 1111  011   1123567899999998887776677788887


Q ss_pred             cCccccceeeeeeecCCc-------CCEEEEEecC-CEEEEEeCCCcEEEEeCCcccccCCCCC-CC---ceeeeeecCC
Q 009993          347 NDCTEANVLLVATWIPHT-------GPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTS-GK---RVSRVIEVEP  414 (520)
Q Consensus       347 ~~~~~~~~~~~~~~~~h~-------~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~---~~~~~~~~~~  414 (520)
                      ...     .++..+ .|.       ..+.+++|-+ ..+++|+.+-.|.+|.+........... +.   ....-.-+..
T Consensus       275 S~R-----~~V~k~-D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~  348 (609)
T KOG4227|consen  275 SQR-----CFVLKS-DHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK  348 (609)
T ss_pred             ccc-----ceeEec-cCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecc
Confidence            752     223322 222       2466777744 5699999999999999975433332111 11   1111112344


Q ss_pred             CcccccCcceeeEEEEecCC--EEEEecCCCeEEEEeC
Q 009993          415 PQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNF  450 (520)
Q Consensus       415 ~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~  450 (520)
                      ...++.||..-+..+.|++.  .|++.|-...++||.-
T Consensus       349 ~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  349 ELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             eeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence            56678899988888877765  8889999999999963

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.76  E-value=1e-16  Score=151.91  Aligned_cols=275  Identities=14%  Similarity=0.163  Sum_probs=195.5

Q ss_pred             HHhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEE
Q 009993          132 KELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCW  209 (520)
Q Consensus       132 ~~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vw  209 (520)
                      ....+....|  .|..++|-|||..|+.+.. ..+.+||...|..+.++++|...|.+++  .+|+.+++|+.|..|.+|
T Consensus         4 ~~~~r~~~~h--ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W   80 (1081)
T KOG1538|consen    4 VLTWRDKAEH--CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIW   80 (1081)
T ss_pred             hhhhhccccc--chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEe
Confidence            3334444455  8899999999998887764 5699999999999999999999998876  899999999999999999


Q ss_pred             EcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eC
Q 009993          210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PH  285 (520)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~  285 (520)
                      +-.-.              .. --..|++.|.|+.|++  ..+++++-. ..-+|....... ...+....+.+.+  .+
T Consensus        81 ~~klE--------------G~-LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V-~K~kss~R~~~CsWtnD  143 (1081)
T KOG1538|consen   81 TSKLE--------------GI-LKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSV-SKHKSSSRIICCSWTND  143 (1081)
T ss_pred             ccccc--------------ce-eeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhH-HhhhhheeEEEeeecCC
Confidence            84321              12 2347999999999976  668888764 467887654332 2222344555555  78


Q ss_pred             CCEEEEEc-CCeEEEEECCCCeeeEEe-ecccccceEEEEecCCC-----CEEEEEeCCCeEEEEEcccCccccceeeee
Q 009993          286 DTTVASTS-GSDVYIWDTNSGCLLTVV-NGAHVGNTKSLARSHTG-----DFLFTGGEDGAIHMYEIINDCTEANVLLVA  358 (520)
Q Consensus       286 ~~~l~~~~-d~~i~iwd~~~~~~~~~~-~~~~~~~i~~l~~s~~~-----~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~  358 (520)
                      |.+++.|- +|+|.+-+-...+.+..- +.+...+|.+++|+|..     ..+++.....++.+|.+....       +.
T Consensus       144 GqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-------Ig  216 (1081)
T KOG1538|consen  144 GQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-------IG  216 (1081)
T ss_pred             CcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-------ec
Confidence            99999999 999999865433333222 24567899999999953     478888888999999886551       21


Q ss_pred             eecCCcCCEEEEEe--cCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEE
Q 009993          359 TWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRI  436 (520)
Q Consensus       359 ~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l  436 (520)
                      .-..-.-...|+.+  ++.+++.|+.|+.+.+|.-..- ...            .+..     ..|-.....+.|++..+
T Consensus       217 k~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gv-rLG------------Tvg~-----~D~WIWtV~~~PNsQ~v  278 (1081)
T KOG1538|consen  217 KDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGV-RLG------------TVGE-----QDSWIWTVQAKPNSQYV  278 (1081)
T ss_pred             ccccCCCCchhheeccCCcEEEEccCCCceEEEeecCe-EEe------------eccc-----cceeEEEEEEccCCceE
Confidence            11111223456666  5689999999999999975431 110            0010     12333344555677799


Q ss_pred             EEecCCCeEEEEeCC
Q 009993          437 VCGGEEGIVRIWNFS  451 (520)
Q Consensus       437 ~sg~~Dg~v~iwd~~  451 (520)
                      +.|..||+|--|++-
T Consensus       279 ~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  279 VVGCQDGTIACYNLI  293 (1081)
T ss_pred             EEEEccCeeehhhhH
Confidence            999999999999975

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.76  E-value=5.6e-17  Score=144.69  Aligned_cols=209  Identities=17%  Similarity=0.257  Sum_probs=160.5

Q ss_pred             hhhhccccccEEEEEEcc-CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEccc
Q 009993          135 IDVLYGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVE  213 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~-~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~  213 (520)
                      .-.+.||+++|..++|+| +...||+||.|.+|.||++..+.....+                                 
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l---------------------------------  120 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL---------------------------------  120 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc---------------------------------
Confidence            445789999999999998 5678999999999999998765332211                                 


Q ss_pred             CcceeeeccCCccccceEEeccCCCCeEEEEEcC---CEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCE
Q 009993          214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL---TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTT  288 (520)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~  288 (520)
                                   ..++..+.+|...|-.++|++   +.|++++.|.+|.+||+.+++.+.++.|++.|++++  .+|.+
T Consensus       121 -------------tepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~  187 (472)
T KOG0303|consen  121 -------------TEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSL  187 (472)
T ss_pred             -------------ccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCce
Confidence                         124456778999999999954   789999999999999999999999999999999988  78999


Q ss_pred             EEEEc-CCeEEEEECCCCeeeEEeeccccc-ceEEEEecCCCCEEEEEe---CCCeEEEEEcccCccccceeeeeeecCC
Q 009993          289 VASTS-GSDVYIWDTNSGCLLTVVNGAHVG-NTKSLARSHTGDFLFTGG---EDGAIHMYEIINDCTEANVLLVATWIPH  363 (520)
Q Consensus       289 l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~-~i~~l~~s~~~~~l~tg~---~dg~i~iwd~~~~~~~~~~~~~~~~~~h  363 (520)
                      +++++ |..|+|||.++++.+..-. +|.+ .-..+.|-.+|.++.||.   .+..+-+||..+-+.+   ....++...
T Consensus       188 l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP---~~~~elDtS  263 (472)
T KOG0303|consen  188 LCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP---IALQELDTS  263 (472)
T ss_pred             eeeecccceeEEEcCCCCcEeeecc-cccCCCcceeEEeccCceeeeccccccccceeccCcccccCc---ceeEEeccC
Confidence            99999 9999999999999998874 5654 445666777888665554   3678999998776432   223333332


Q ss_pred             cCCEEEEEecC--C-EEEEEeCCCcEEEEeCCcc
Q 009993          364 TGPVNSLAFEF--P-WLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       364 ~~~v~~l~~~~--~-~l~s~s~dg~i~vwd~~~~  394 (520)
                       ..|.-=-|++  . ..++|-.|+.|+.|.+...
T Consensus       264 -nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  264 -NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             -CceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence             3333333455  3 4456668999999999764

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=9.5e-16  Score=150.47  Aligned_cols=336  Identities=18%  Similarity=0.222  Sum_probs=226.2

Q ss_pred             HhhhhhccccccEEEEEEccCC---CEEEEEeCCCeEEEEECCCCcEEEEeCC---------------------------
Q 009993          133 ELIDVLYGHTEAVLTVFVLASA---KLLFTSGYDSIVRMWHLEDGFSIASSKP---------------------------  182 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~---~~l~sgs~dg~v~vwd~~~~~~~~~~~~---------------------------  182 (520)
                      .+++.|.+|..+++.+.+.|..   .++++++.||+|++||...+..++++..                           
T Consensus        48 ~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~  127 (792)
T KOG1963|consen   48 ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDY  127 (792)
T ss_pred             hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccc
Confidence            6688999999999999999854   4678999999999999876644433210                           


Q ss_pred             ----------------------------------------------------------------------------CCc-
Q 009993          183 ----------------------------------------------------------------------------LGC-  185 (520)
Q Consensus       183 ----------------------------------------------------------------------------~~~-  185 (520)
                                                                                                  |.. 
T Consensus       128 ~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~  207 (792)
T KOG1963|consen  128 SILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFN  207 (792)
T ss_pred             eeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhccc
Confidence                                                                                        011 


Q ss_pred             -eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEE
Q 009993          186 -TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVW  262 (520)
Q Consensus       186 -~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iw  262 (520)
                       .+.+++|+++++++|..||.|.+|.--..         .........+.=|...|.+++|  +|.+|++|+..|.+.+|
T Consensus       208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~---------~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~W  278 (792)
T KOG1963|consen  208 ITCVALSPNERYLAAGDSDGRILVWRDFGS---------SDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLW  278 (792)
T ss_pred             ceeEEeccccceEEEeccCCcEEEEecccc---------ccccccceEEEecccccceeEEecCCceEeecccceEEEEE
Confidence             11245689999999999999999973221         1112344556678999999999  89999999999999999


Q ss_pred             ECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEee----------cccccceEEEEecCCCC
Q 009993          263 DRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVN----------GAHVGNTKSLARSHTGD  329 (520)
Q Consensus       263 d~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~----------~~~~~~i~~l~~s~~~~  329 (520)
                      .+.+++....-+..++|..+.  +++.+.+... |+.|.+....+......+.          ....+-.+.++++|..+
T Consensus       279 q~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~  358 (792)
T KOG1963|consen  279 QLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN  358 (792)
T ss_pred             eecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence            999998433334788888776  8888887777 9999998876654433332          11244567788999778


Q ss_pred             EEEEEeCCCeEEEEEcccCccccceeeeeeecCCc------CCEEEEEec--CCEEEEEeC--------C--CcEEEEeC
Q 009993          330 FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT------GPVNSLAFE--FPWLVSAAG--------D--GKLSLIDV  391 (520)
Q Consensus       330 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~------~~v~~l~~~--~~~l~s~s~--------d--g~i~vwd~  391 (520)
                      .++-.+..|.|.+||+.+.....+..... ...+.      -.+++++.+  +.+++|+-.        |  -.+++|-.
T Consensus       359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~-~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~  437 (792)
T KOG1963|consen  359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCD-ENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQY  437 (792)
T ss_pred             ceeecCCCceEEEEeccccceeeeEEEEe-ecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEE
Confidence            88888999999999998885543332211 11222      234555543  467766543        3  34678877


Q ss_pred             CcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC--CEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccc
Q 009993          392 RKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLE  469 (520)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~  469 (520)
                      ....+....            .......++-...++++....  ...+|+|.||.++||-+.....+......-......
T Consensus       438 n~~~kt~~L------------~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~  505 (792)
T KOG1963|consen  438 NPNSKTFIL------------NTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIG  505 (792)
T ss_pred             cCCcceeEE------------EEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeee
Confidence            653222110            111111222223333333322  289999999999999997666555544443333344


Q ss_pred             hhhhhccceeeeccCCCcccc
Q 009993          470 NRMRRRKLQTEMSSKGGRTDQ  490 (520)
Q Consensus       470 ~~~~~~~~~~~~s~~g~~~~~  490 (520)
                      ..+++.....+|+.||.-++.
T Consensus       506 sy~k~~i~a~~fs~dGslla~  526 (792)
T KOG1963|consen  506 SYHKTPITALCFSQDGSLLAV  526 (792)
T ss_pred             ccccCcccchhhcCCCcEEEE
Confidence            457788899999999965554

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.75  E-value=1.4e-16  Score=136.59  Aligned_cols=249  Identities=21%  Similarity=0.262  Sum_probs=176.4

Q ss_pred             hhhhccccccEEEEEEccC-CCEEEEEeCC-------CeEEEEECCCC---------cEEEEeC-CCCceEEEE--ecCC
Q 009993          135 IDVLYGHTEAVLTVFVLAS-AKLLFTSGYD-------SIVRMWHLEDG---------FSIASSK-PLGCTIRAV--AADK  194 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~-~~~l~sgs~d-------g~v~vwd~~~~---------~~~~~~~-~~~~~v~~~--~~~~  194 (520)
                      .++|..|.+.|..++-+|- .++|+|+..+       -.+.||.+...         +++..+. .+-..+.|+  .|++
T Consensus        56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns  135 (370)
T KOG1007|consen   56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS  135 (370)
T ss_pred             hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence            5678889999999999995 4566665442       24779998643         2233333 222344454  4999


Q ss_pred             CEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE----cCCEEEEEecCCeEEEEECCCCcEE
Q 009993          195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRALLKCL  270 (520)
Q Consensus       195 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~v~iwd~~~~~~~  270 (520)
                      ..+++-. |..|.+|++..+....-.+..+..       .+|....++-+|    +++.+++.+ |+++..||+++..+.
T Consensus       136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s-------~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~  206 (370)
T KOG1007|consen  136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSES-------AEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKN  206 (370)
T ss_pred             CeeEEec-cCceEEEEcccCcchheeeccccc-------ccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhh
Confidence            9988776 788999999876432211111111       124555666677    445666554 799999999999988


Q ss_pred             EEee--eccCEEEEe--eCC-CEEEEEc-CCeEEEEECCCC-eeeEEeecccccceEEEEecCC-CCEEEEEeCCCeEEE
Q 009993          271 KVLR--HSDWVYGLA--PHD-TTVASTS-GSDVYIWDTNSG-CLLTVVNGAHVGNTKSLARSHT-GDFLFTGGEDGAIHM  342 (520)
Q Consensus       271 ~~~~--~~~~v~~~~--~~~-~~l~~~~-d~~i~iwd~~~~-~~~~~~~~~~~~~i~~l~~s~~-~~~l~tg~~dg~i~i  342 (520)
                      ..+.  |...|..+.  |+. .+|++|+ ||.|++||.+.- .++..+. +|...|.++.|+|. .+++++|+.|..|.+
T Consensus       207 ~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-~HsHWvW~VRfn~~hdqLiLs~~SDs~V~L  285 (370)
T KOG1007|consen  207 NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-GHSHWVWAVRFNPEHDQLILSGGSDSAVNL  285 (370)
T ss_pred             cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-CCceEEEEEEecCccceEEEecCCCceeEE
Confidence            8887  888899988  443 3567777 899999999875 4566665 79999999999995 457889999999999


Q ss_pred             EEcccCccc------------------cc-----eeeeeeecCCcCCEEEEEec---CCEEEEEeCCCcEEEEeCCc
Q 009993          343 YEIINDCTE------------------AN-----VLLVATWIPHTGPVNSLAFE---FPWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       343 wd~~~~~~~------------------~~-----~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~  393 (520)
                      |....-...                  ..     -..+.++..|...|++++|+   |-.+++-+.||.+.|=.+..
T Consensus       286 sca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  286 SCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             EeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence            976432210                  01     12345678899999999995   56899999999999877654

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.75  E-value=9.5e-16  Score=150.17  Aligned_cols=261  Identities=16%  Similarity=0.156  Sum_probs=176.4

Q ss_pred             CCeEEEEECCCC-cEEEEeC-CCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCC
Q 009993          163 DSIVRMWHLEDG-FSIASSK-PLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGP  239 (520)
Q Consensus       163 dg~v~vwd~~~~-~~~~~~~-~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  239 (520)
                      ++.+.||++... .+...+. .....+.+++ .+.++++.|..+|.|.+||+..+...+       ..........|..+
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-------~s~ls~~~~sh~~~  293 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-------PSGLSALEVSHSEP  293 (555)
T ss_pred             CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-------CcccccccccCCcC
Confidence            357999999876 3333333 2233444455 578899999999999999998764211       11122334578999


Q ss_pred             eEEEEE----cCCEEEEEecCCeEEEEECCCCcEEEE-e------------eeccCEEEEe---eCCCEEEEEc-CCeEE
Q 009993          240 ITSLAL----DLTRIYSGSWDMTVRVWDRALLKCLKV-L------------RHSDWVYGLA---PHDTTVASTS-GSDVY  298 (520)
Q Consensus       240 v~~l~~----~~~~l~s~s~dg~v~iwd~~~~~~~~~-~------------~~~~~v~~~~---~~~~~l~~~~-d~~i~  298 (520)
                      ++.+.|    .+.-+++++.||.|..|+++....... .            .....+++++   .+...+++|+ +|.|.
T Consensus       294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~  373 (555)
T KOG1587|consen  294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVY  373 (555)
T ss_pred             eEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEE
Confidence            999999    235599999999999998865432111 0            1123345555   5677788888 78887


Q ss_pred             EEECCCCeee-------EEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcc-cCccccceeeeeeecCCcCCEEEE
Q 009993          299 IWDTNSGCLL-------TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEII-NDCTEANVLLVATWIPHTGPVNSL  370 (520)
Q Consensus       299 iwd~~~~~~~-------~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~-~~~~~~~~~~~~~~~~h~~~v~~l  370 (520)
                      --+....+.-       ......|.++|+++.++|=+..++..+.|.+++||... ..      .++..+..+...|+++
T Consensus       374 ~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~------~Pl~~~~~~~~~v~~v  447 (555)
T KOG1587|consen  374 KGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA------SPLLSLDSSPDYVTDV  447 (555)
T ss_pred             EEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC------Ccchhhhhccceeeee
Confidence            7443322211       11123588999999999977655554459999999987 44      5777788888889999


Q ss_pred             EecC---CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc--cCcceeeEEEEecCCEEEEecCCCeE
Q 009993          371 AFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML--HGFECNLLSVDIGADRIVCGGEEGIV  445 (520)
Q Consensus       371 ~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~l~sg~~Dg~v  445 (520)
                      +|+|   ..++++..||.|.+||+......                 +....  .........++..+..|++|+..|.+
T Consensus       448 aWSptrpavF~~~d~~G~l~iWDLl~~~~~-----------------Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~  510 (555)
T KOG1587|consen  448 AWSPTRPAVFATVDGDGNLDIWDLLQDDEE-----------------PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTT  510 (555)
T ss_pred             EEcCcCceEEEEEcCCCceehhhhhccccC-----------------CcccccccccccceeecCCCCcEEEEecCCCcE
Confidence            9986   58999999999999999863211                 11111  11112233444556799999999999


Q ss_pred             EEEeCCch
Q 009993          446 RIWNFSQA  453 (520)
Q Consensus       446 ~iwd~~~~  453 (520)
                      .+|++...
T Consensus       511 ~~~~l~~~  518 (555)
T KOG1587|consen  511 HILKLSES  518 (555)
T ss_pred             EEEEcCch
Confidence            99999643

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.75  E-value=1e-14  Score=144.97  Aligned_cols=316  Identities=30%  Similarity=0.472  Sum_probs=224.7

Q ss_pred             CCCcccHHH-----hhhhhcccc-ccEEEEEE-ccCCC-EEEEEeC-CCeEEEEECCC-CcEEEEeCCCCceEEEE--ec
Q 009993          125 FSDDKSWKE-----LIDVLYGHT-EAVLTVFV-LASAK-LLFTSGY-DSIVRMWHLED-GFSIASSKPLGCTIRAV--AA  192 (520)
Q Consensus       125 ~~~~~~W~~-----~~~~l~~h~-~~V~~l~~-~~~~~-~l~sgs~-dg~v~vwd~~~-~~~~~~~~~~~~~v~~~--~~  192 (520)
                      ......|+.     ....+.++. ..+..+.+ ++++. .++..+. |+.+.+|+... ......+..|...+..+  .+
T Consensus        86 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  165 (466)
T COG2319          86 DGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP  165 (466)
T ss_pred             CCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECC
Confidence            444566661     345555644 37777777 78777 5555444 99999999998 77888888888877755  48


Q ss_pred             CCCEEEEEeC-CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCC-EEEEEecCCeEEEEECCCCc
Q 009993          193 DKKLLVAGGT-DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLT-RIYSGSWDMTVRVWDRALLK  268 (520)
Q Consensus       193 ~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~s~s~dg~v~iwd~~~~~  268 (520)
                      ++..+++++. |+.+++|++.++             .....+.+|...|.++++  ++. .+++++.|+.|++||...+.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~  232 (466)
T COG2319         166 DGKLLASGSSLDGTIKLWDLRTG-------------KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK  232 (466)
T ss_pred             CCCEEEecCCCCCceEEEEcCCC-------------ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc
Confidence            8888888886 999999998763             245566679999999999  444 45555999999999998887


Q ss_pred             EEE-Eee-eccC-EEEEeeCCCEEEEEc-CCeEEEEECCCCee-eEEeecccccceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993          269 CLK-VLR-HSDW-VYGLAPHDTTVASTS-GSDVYIWDTNSGCL-LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY  343 (520)
Q Consensus       269 ~~~-~~~-~~~~-v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~-~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iw  343 (520)
                      ... .+. |... +..+.+++..+++++ ++.+++||...... ...+ .+|...+.++.|+|++..+++++.|+.+.+|
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~  311 (466)
T COG2319         233 LLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLW  311 (466)
T ss_pred             EEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEE
Confidence            777 454 5444 445668887888777 99999999987765 4444 4688999999999988888889999999999


Q ss_pred             EcccCccccceeeeeee--cCCcCCEEEEEecC--CEEEEE-eCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCccc
Q 009993          344 EIINDCTEANVLLVATW--IPHTGPVNSLAFEF--PWLVSA-AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRM  418 (520)
Q Consensus       344 d~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~--~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (520)
                      |.....      .....  ..|...+..+.+.+  ..++.+ ..|+.+.+|+.....                   ....
T Consensus       312 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-------------------~~~~  366 (466)
T COG2319         312 DLETGK------LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-------------------PLKT  366 (466)
T ss_pred             EcCCCc------eEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-------------------eeEE
Confidence            888773      33333  37777899999832  355555 688999999998742                   0111


Q ss_pred             ccCcc-eeeEEEEecCCEEE-EecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccc
Q 009993          419 LHGFE-CNLLSVDIGADRIV-CGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQ  490 (520)
Q Consensus       419 ~~~~~-~~v~~~~~~~~~l~-sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~  490 (520)
                      ..... .....+.+. ..++ .+..++.+.+|+..............          .......+++++..+++
T Consensus       367 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~  429 (466)
T COG2319         367 LEGHSNVLSVSFSPD-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT----------SRVTSLDFSPDGKSLAS  429 (466)
T ss_pred             ecCCceEEEEEECCC-CCEEEEecCCCceEEEecccCeeeeeccCCC----------CcEEEEEECCCCcEEEE
Confidence            11111 222233332 3333 47899999999999776544332221          34567778888877766

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.73  E-value=3.2e-16  Score=134.48  Aligned_cols=231  Identities=17%  Similarity=0.273  Sum_probs=171.0

Q ss_pred             ccccccEEEEEEccCC-----CEEEEEeCCCeEEEEECCCCcEE----EE-----eCCCCceEEEEe---cCCCEEEEEe
Q 009993          139 YGHTEAVLTVFVLASA-----KLLFTSGYDSIVRMWHLEDGFSI----AS-----SKPLGCTIRAVA---ADKKLLVAGG  201 (520)
Q Consensus       139 ~~h~~~V~~l~~~~~~-----~~l~sgs~dg~v~vwd~~~~~~~----~~-----~~~~~~~v~~~~---~~~~~l~sg~  201 (520)
                      ..|.-+++.+.|.|+.     .+|||.+  ..+|+|.+...+..    ..     -..+..++++|.   .+.+++.+.+
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            5788899999999976     3566554  45999998742111    11     123456777776   5788999999


Q ss_pred             CCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-c--CCEEEEEecCCeEEEEECCCCcEEEEee----
Q 009993          202 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-D--LTRIYSGSWDMTVRVWDRALLKCLKVLR----  274 (520)
Q Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~--~~~l~s~s~dg~v~iwd~~~~~~~~~~~----  274 (520)
                      .|-+..|||++++..          ......+..|...|..++| .  -+.+++.+.||.||+||++..+-...+-    
T Consensus       171 iDTTCTiWdie~~~~----------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~  240 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVS----------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS  240 (364)
T ss_pred             ccCeEEEEEEeeccc----------cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC
Confidence            999999999988621          1234567789999999999 3  3779999999999999999876544443    


Q ss_pred             eccCEEEEe---eCCCEEEEEc--CCeEEEEECCCC-eeeEEeecccccceEEEEecCC-CCEEEEEeCCCeEEEEEccc
Q 009993          275 HSDWVYGLA---PHDTTVASTS--GSDVYIWDTNSG-CLLTVVNGAHVGNTKSLARSHT-GDFLFTGGEDGAIHMYEIIN  347 (520)
Q Consensus       275 ~~~~v~~~~---~~~~~l~~~~--d~~i~iwd~~~~-~~~~~~~~~~~~~i~~l~~s~~-~~~l~tg~~dg~i~iwd~~~  347 (520)
                      ...+...++   .+.+++++-.  ...|.|.|++.. .++..+. +|.+.|+.++|.|. ...|+++++|..+.+||+..
T Consensus       241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~-~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR-NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhh-cCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence            244556666   5677887766  477999999976 4566665 79999999999995 46899999999999999987


Q ss_pred             CccccceeeeeeecCCcCCEEEEEec---CCEEEEEeCC
Q 009993          348 DCTEANVLLVATWIPHTGPVNSLAFE---FPWLVSAAGD  383 (520)
Q Consensus       348 ~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~d  383 (520)
                      ........++..+. ..+.|+.+.|+   |++++.+...
T Consensus       320 ~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  320 MPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             ccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence            64322223343343 56789999996   4788887654

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=6.5e-16  Score=144.97  Aligned_cols=277  Identities=14%  Similarity=0.158  Sum_probs=195.6

Q ss_pred             EEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC---CEEEE
Q 009993          178 ASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL---TRIYS  252 (520)
Q Consensus       178 ~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s  252 (520)
                      ..+.+|.+.|.+++  +.|..|++|+.||+|+||.+.++.+             +... ...+.|.|++|++   .-+++
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc-------------vr~~-~~d~~I~~vaw~P~~~~~vLA  459 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC-------------VRTV-QFDSEIRSVAWNPLSDLCVLA  459 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE-------------EEEE-eecceeEEEEecCCCCceeEE
Confidence            45689999999988  8999999999999999999999842             2222 2345788888833   12333


Q ss_pred             EecCCeEEEEECCCC--------------------------------------cEEEEeeeccCEEEEe--eCCCEEEEE
Q 009993          253 GSWDMTVRVWDRALL--------------------------------------KCLKVLRHSDWVYGLA--PHDTTVAST  292 (520)
Q Consensus       253 ~s~dg~v~iwd~~~~--------------------------------------~~~~~~~~~~~v~~~~--~~~~~l~~~  292 (520)
                      ++.+..+.+-+..-|                                      ..-.++.|...|..+.  ..|.+|++.
T Consensus       460 vA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV  539 (733)
T KOG0650|consen  460 VAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATV  539 (733)
T ss_pred             EEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEe
Confidence            333333444432111                                      0112344777777777  568899887


Q ss_pred             c-C---CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEE
Q 009993          293 S-G---SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN  368 (520)
Q Consensus       293 ~-d---~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~  368 (520)
                      . +   ..|.|.++........|. ...+.|.++.|+|...+|++++. ..|+|||+...      ..+..+......|.
T Consensus       540 ~~~~~~~~VliHQLSK~~sQ~PF~-kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq------elvKkL~tg~kwiS  611 (733)
T KOG0650|consen  540 MPDSGNKSVLIHQLSKRKSQSPFR-KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ------ELVKKLLTGSKWIS  611 (733)
T ss_pred             ccCCCcceEEEEecccccccCchh-hcCCceeEEEecCCCceEEEEec-cceEEEehhHH------HHHHHHhcCCeeee
Confidence            6 3   569999998876665554 35678999999999999888864 56999999887      66777777778899


Q ss_pred             EEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEEecCCCe
Q 009993          369 SLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGI  444 (520)
Q Consensus       369 ~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~  444 (520)
                      .++.+|  +.|+.|+.|+.+..+|+.-.                  ..+.+.+..|...+.++++++.  ++++|+.||+
T Consensus       612 ~msihp~GDnli~gs~d~k~~WfDldls------------------skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgt  673 (733)
T KOG0650|consen  612 SMSIHPNGDNLILGSYDKKMCWFDLDLS------------------SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT  673 (733)
T ss_pred             eeeecCCCCeEEEecCCCeeEEEEcccC------------------cchhHHhhhhhhhhhhhhhccccceeeeecCCCc
Confidence            999977  89999999999999999864                  4455667788889999999988  8999999999


Q ss_pred             EEEEeCCchHhHH--HHhhhhccccc-chhhhhccceeeeccCCCcccccccc
Q 009993          445 VRIWNFSQAFEIE--RRARALRGIRL-ENRMRRRKLQTEMSSKGGRTDQCSVA  494 (520)
Q Consensus       445 v~iwd~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~s~~g~~~~~~s~~  494 (520)
                      +.|+--.--..+-  .+..+++..+- +....-.+..+.|+|...++.++..+
T Consensus       674 v~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd  726 (733)
T KOG0650|consen  674 VIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGAD  726 (733)
T ss_pred             EEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCC
Confidence            9998543221111  11111111111 11112236788899999999887654

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.71  E-value=3.3e-16  Score=139.81  Aligned_cols=198  Identities=20%  Similarity=0.270  Sum_probs=145.5

Q ss_pred             EeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcE-------EEEee-eccCEEEEeeC---CCEEEEEc-CCe
Q 009993          232 RLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKC-------LKVLR-HSDWVYGLAPH---DTTVASTS-GSD  296 (520)
Q Consensus       232 ~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~-------~~~~~-~~~~v~~~~~~---~~~l~~~~-d~~  296 (520)
                      .+.||+++|..++|   +...|++||.|.+|.||.+..+..       +..+. |...|.-+..+   .+.|++++ |.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            45689999999999   668899999999999999865432       33333 77778777732   34555555 999


Q ss_pred             EEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcC--CEEEEEe-c
Q 009993          297 VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG--PVNSLAF-E  373 (520)
Q Consensus       297 i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~--~v~~l~~-~  373 (520)
                      |.+||+.+|+.+..+.  |...|+++.|+.+|.++++.+.|..|+|||.+++      ..+..-.+|.+  +...+-. +
T Consensus       156 v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~------~~v~e~~~heG~k~~Raifl~~  227 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG------TVVSEGVAHEGAKPARAIFLAS  227 (472)
T ss_pred             EEEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCC------cEeeecccccCCCcceeEEecc
Confidence            9999999999988875  9999999999999999999999999999999999      66776677765  3344433 4


Q ss_pred             CCEEEEEe---CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC---EEEEecCCCeEEE
Q 009993          374 FPWLVSAA---GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD---RIVCGGEEGIVRI  447 (520)
Q Consensus       374 ~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~sg~~Dg~v~i  447 (520)
                      +..+.||.   .+..+-+||..+......                ...+. .+..|+---+|++   ..++|-.|+.||-
T Consensus       228 g~i~tTGfsr~seRq~aLwdp~nl~eP~~----------------~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRY  290 (472)
T KOG0303|consen  228 GKIFTTGFSRMSERQIALWDPNNLEEPIA----------------LQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRY  290 (472)
T ss_pred             CceeeeccccccccceeccCcccccCcce----------------eEEec-cCCceEEeeecCCCCEEEEEecCCcceEE
Confidence            45444443   378899999887532211                01111 1223333334444   5667778999999


Q ss_pred             EeCCchH
Q 009993          448 WNFSQAF  454 (520)
Q Consensus       448 wd~~~~~  454 (520)
                      |++.+..
T Consensus       291 yEit~d~  297 (472)
T KOG0303|consen  291 FEITNEP  297 (472)
T ss_pred             EEecCCC
Confidence            9998765

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.71  E-value=2e-15  Score=147.87  Aligned_cols=248  Identities=16%  Similarity=0.167  Sum_probs=174.5

Q ss_pred             ccccEEEEEEcc-CCCEEEEEeCCCeEEEEECCCCcE--EEE----eCCCCceEEEEe----cCCCEEEEEeCCCcEEEE
Q 009993          141 HTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDGFS--IAS----SKPLGCTIRAVA----ADKKLLVAGGTDGFIHCW  209 (520)
Q Consensus       141 h~~~V~~l~~~~-~~~~l~sgs~dg~v~vwd~~~~~~--~~~----~~~~~~~v~~~~----~~~~~l~sg~~dg~i~vw  209 (520)
                      -...|+|+.|+| +..+++.|..+|.|.+||+..+..  ...    ...|..+++++.    +.+.-+++++.||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            457899999999 567888899999999999987755  222    235777777765    334679999999999999


Q ss_pred             EcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCC---Cc-----EEEEee-ecc
Q 009993          210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRAL---LK-----CLKVLR-HSD  277 (520)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~---~~-----~~~~~~-~~~  277 (520)
                      +++.-............. ....-......++++.|   ++..++.|+.+|.|.--+...   ..     .+..+. |.+
T Consensus       321 ~~~~l~~P~e~~~~~~~~-~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g  399 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKK-HKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG  399 (555)
T ss_pred             eccccccchhhccccccc-ccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence            875432211110000000 00001123456788888   778999999999988743322   22     111222 889


Q ss_pred             CEEEEe---eCCCEEEEEcCCeEEEEECC-CCeeeEEeecccccceEEEEecCCC-CEEEEEeCCCeEEEEEcccCcccc
Q 009993          278 WVYGLA---PHDTTVASTSGSDVYIWDTN-SGCLLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEA  352 (520)
Q Consensus       278 ~v~~~~---~~~~~l~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~tg~~dg~i~iwd~~~~~~~~  352 (520)
                      +|+++.   .....+.+++|.+++||... ...++..+. .+...+++++|||.. ..++++..||.|.+||+.....  
T Consensus       400 ~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~-~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~--  476 (555)
T KOG1587|consen  400 PVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD-SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE--  476 (555)
T ss_pred             ceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh-hccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc--
Confidence            999998   44566677779999999988 566666665 367779999999965 4677888899999999987643  


Q ss_pred             ceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993          353 NVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       353 ~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  394 (520)
                        .++.+...+....+.+.|++  ..|++|...|++.+|++...
T Consensus       477 --~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  477 --EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             --CCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence              44555555556667777754  68999999999999999754

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=4e-16  Score=136.93  Aligned_cols=248  Identities=17%  Similarity=0.207  Sum_probs=173.1

Q ss_pred             HhhhhhccccccEEEEEEcc--CCCEEEEEeCCCeEEEEECCCCcEEEEe--CCCC-ceEEEEec--CCCEEEEEeC---
Q 009993          133 ELIDVLYGHTEAVLTVFVLA--SAKLLFTSGYDSIVRMWHLEDGFSIASS--KPLG-CTIRAVAA--DKKLLVAGGT---  202 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~--~~~~l~sgs~dg~v~vwd~~~~~~~~~~--~~~~-~~v~~~~~--~~~~l~sg~~---  202 (520)
                      +.+..+++|...+..+.|..  ....+.+|+.||+|++||+.+......+  ..+. .+-.++..  +++.+++|..   
T Consensus        61 ~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~  140 (376)
T KOG1188|consen   61 QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTR  140 (376)
T ss_pred             hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecccccc
Confidence            47888999999999999987  4678999999999999999887655444  3443 45556663  6777887754   


Q ss_pred             -CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCC----cEEEEee
Q 009993          203 -DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALL----KCLKVLR  274 (520)
Q Consensus       203 -dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~----~~~~~~~  274 (520)
                       +-.|.+||++.....           ...-...|...|+++.|   +++.|++||.||.|.+||+...    ..+.++.
T Consensus       141 s~A~v~lwDvR~~qq~-----------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN  209 (376)
T KOG1188|consen  141 SDASVVLWDVRSEQQL-----------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN  209 (376)
T ss_pred             CceEEEEEEeccccch-----------hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc
Confidence             577999999765321           12234579999999999   7799999999999999998754    2455666


Q ss_pred             eccCEEEEee--CC-CEEEEEc-CCeEEEEECCCCeeeEEeecccc-----------cceEEEEecC-CCCEEEEEeC-C
Q 009993          275 HSDWVYGLAP--HD-TTVASTS-GSDVYIWDTNSGCLLTVVNGAHV-----------GNTKSLARSH-TGDFLFTGGE-D  337 (520)
Q Consensus       275 ~~~~v~~~~~--~~-~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~-----------~~i~~l~~s~-~~~~l~tg~~-d  337 (520)
                      +...|.++..  .+ +.+.+-+ ..+..+|+++.+.....+..+..           ..+... .+| ++..++.++. -
T Consensus       210 ~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~  288 (376)
T KOG1188|consen  210 HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDS  288 (376)
T ss_pred             ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEecccc
Confidence            7777887772  22 2355555 89999999998876555442110           011111 223 4455555544 5


Q ss_pred             CeEEEEEcccCccccceeeeeeecC-CcCCEEEEEec--CCEEEEEeCCCcEEEEeCC
Q 009993          338 GAIHMYEIINDCTEANVLLVATWIP-HTGPVNSLAFE--FPWLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       338 g~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~  392 (520)
                      |+..++-+...........+..+.+ |...|+++.|+  ...+.||+.||.+.+|...
T Consensus       289 n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  289 NKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             CceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence            6666665553222222244555555 77788999885  5799999999999999964

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.71  E-value=7.6e-16  Score=142.66  Aligned_cols=257  Identities=16%  Similarity=0.134  Sum_probs=180.8

Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc-EEEEeCCCC-ceEE---EEe----cCCCEEEEEeCCCcEEEEE
Q 009993          140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF-SIASSKPLG-CTIR---AVA----ADKKLLVAGGTDGFIHCWR  210 (520)
Q Consensus       140 ~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~-~~~~~~~~~-~~v~---~~~----~~~~~l~sg~~dg~i~vwd  210 (520)
                      .|...|.|+.|+.+...+.+++.+..+.-||+.+.. .+..++..- .+..   ..+    .....++.++.||.+.+.+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~   91 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN   91 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence            577888899999877766666555544445554332 111111110 0111   111    2345788899999998876


Q ss_pred             cccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEe-eeccCEEEEe--eC
Q 009993          211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA--PH  285 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~--~~  285 (520)
                      -.              .........|.+.|.+-.|  +|.-|++++.||.|++|.- +|-...++ +...+|.|+.  |+
T Consensus        92 k~--------------~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~  156 (737)
T KOG1524|consen   92 KS--------------ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPN  156 (737)
T ss_pred             cc--------------chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCC
Confidence            32              2244456789999999999  7888999999999999985 44333333 3677889988  88


Q ss_pred             CCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcC
Q 009993          286 DTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG  365 (520)
Q Consensus       286 ~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  365 (520)
                      .+.++-+..+.+.|=-+.....+.... +|.+-|.++.|++..+++++|++|-..++||-...       .+..-..|..
T Consensus       157 S~~vl~c~g~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~-------~Lf~S~~~ey  228 (737)
T KOG1524|consen  157 SNSIVFCQGGHISIKPLAANSKIIRWR-AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA-------NLFTSAAEEY  228 (737)
T ss_pred             CCceEEecCCeEEEeecccccceeEEe-ccCcEEEEeecCccccceeecCCceeEEeecccCc-------ccccCChhcc
Confidence            888888888888887777776666666 69999999999999999999999999999997654       5666678999


Q ss_pred             CEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeE
Q 009993          366 PVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIV  445 (520)
Q Consensus       366 ~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v  445 (520)
                      +|++++|+|+.++..+.-+++++=..+.                            .+.-..++++||..+++|...|.+
T Consensus       229 ~ITSva~npd~~~~v~S~nt~R~~~p~~----------------------------GSifnlsWS~DGTQ~a~gt~~G~v  280 (737)
T KOG1524|consen  229 AITSVAFNPEKDYLLWSYNTARFSSPRV----------------------------GSIFNLSWSADGTQATCGTSTGQL  280 (737)
T ss_pred             ceeeeeeccccceeeeeeeeeeecCCCc----------------------------cceEEEEEcCCCceeeccccCceE
Confidence            9999999997555444444555221111                            122334555667799999998887


Q ss_pred             EE
Q 009993          446 RI  447 (520)
Q Consensus       446 ~i  447 (520)
                      .+
T Consensus       281 ~~  282 (737)
T KOG1524|consen  281 IV  282 (737)
T ss_pred             EE
Confidence            65

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=2.8e-15  Score=149.39  Aligned_cols=274  Identities=15%  Similarity=0.146  Sum_probs=183.8

Q ss_pred             eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEec---cCCCCeEEEEE----cCCEEEEEecCCe
Q 009993          186 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW---EHEGPITSLAL----DLTRIYSGSWDMT  258 (520)
Q Consensus       186 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~----~~~~l~s~s~dg~  258 (520)
                      .+..+++-...++++...-.|.|||.+.+..             ...+.   .....|+.+.+    |...+++|+.||.
T Consensus      1068 k~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~-------------l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGv 1134 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDRERIRVWDWEKGRL-------------LNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGV 1134 (1387)
T ss_pred             ceeeecCCCceeEEcCCcceEEEEecccCce-------------eccccCCCCCCCccceeeeecccchhheeeeccCce
Confidence            3445566677888888788999999987642             11111   23467889988    4478999999999


Q ss_pred             EEEEECC-C----CcEEEEee----------eccCEEEEe-eCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEE
Q 009993          259 VRVWDRA-L----LKCLKVLR----------HSDWVYGLA-PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSL  322 (520)
Q Consensus       259 v~iwd~~-~----~~~~~~~~----------~~~~v~~~~-~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l  322 (520)
                      |+||+-. +    .+.+.-..          ..+-|.... ..|.++++|.-..|+|||......+..+..+....++++
T Consensus      1135 IRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaL 1214 (1387)
T KOG1517|consen 1135 IRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTAL 1214 (1387)
T ss_pred             EEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceee
Confidence            9999743 2    22222221          122333333 345555555568899999999999988887667778877


Q ss_pred             EecC-CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCC--EEEEEecC---CEEEEEeCCCcEEEEeCCcccc
Q 009993          323 ARSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP--VNSLAFEF---PWLVSAAGDGKLSLIDVRKLLR  396 (520)
Q Consensus       323 ~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~  396 (520)
                      .-+. .|+.+++|..||.|++||.+.....   ..+...+.|...  |..+.+.+   ..|++|+.||.|++||++....
T Consensus      1215 S~~~~~gn~i~AGfaDGsvRvyD~R~a~~d---s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~ 1291 (1387)
T KOG1517|consen 1215 SADLVHGNIIAAGFADGSVRVYDRRMAPPD---SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK 1291 (1387)
T ss_pred             cccccCCceEEEeecCCceEEeecccCCcc---ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc
Confidence            6543 5799999999999999999887432   457778888887  99999965   4799999999999999997311


Q ss_pred             cCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhcc
Q 009993          397 SGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRK  476 (520)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (520)
                      ....          .+.  ...-.|.....+.++.+...+|+|+. +.|+||++..........+    ........-..
T Consensus      1292 e~~~----------~iv--~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n----~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1292 ETFL----------TIV--AHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYN----PGFMGQRIGSV 1354 (1387)
T ss_pred             cccc----------eee--eccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccC----cccccCcCCCc
Confidence            1000          000  00001222445566666679999998 9999999875543222111    11112222334


Q ss_pred             ceeeeccCCCcccccc
Q 009993          477 LQTEMSSKGGRTDQCS  492 (520)
Q Consensus       477 ~~~~~s~~g~~~~~~s  492 (520)
                      ..++|+|---.+|+.+
T Consensus      1355 scL~FHP~~~llAaG~ 1370 (1387)
T KOG1517|consen 1355 SCLAFHPHRLLLAAGS 1370 (1387)
T ss_pred             ceeeecchhHhhhhcc
Confidence            7889999888888775

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.70  E-value=2.6e-15  Score=151.88  Aligned_cols=275  Identities=14%  Similarity=0.205  Sum_probs=181.4

Q ss_pred             EECCCCcEEEEeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE
Q 009993          169 WHLEDGFSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL  245 (520)
Q Consensus       169 wd~~~~~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  245 (520)
                      |+. .|..+..+..|...+..+.   +++.++++||.||+|++||...-...      ........++..-.+.+.++.+
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~------~~s~rS~ltys~~~sr~~~vt~ 1106 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE------GGSARSELTYSPEGSRVEKVTM 1106 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC------cceeeeeEEEeccCCceEEEEe
Confidence            553 4788888888888776654   56689999999999999998654211      0112233344435667777776


Q ss_pred             --cCCEEEEEecCCeEEEEECCCCc-------EEEEee--eccCEEEEe----eCCC-EEEEEc-CCeEEEEECCCCeee
Q 009993          246 --DLTRIYSGSWDMTVRVWDRALLK-------CLKVLR--HSDWVYGLA----PHDT-TVASTS-GSDVYIWDTNSGCLL  308 (520)
Q Consensus       246 --~~~~l~s~s~dg~v~iwd~~~~~-------~~~~~~--~~~~v~~~~----~~~~-~l~~~~-d~~i~iwd~~~~~~~  308 (520)
                        .++.++.++.||.|++.++....       +.....  ..+.+.++.    .... .++.+. -+.|..||++.....
T Consensus      1107 ~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~ 1186 (1431)
T KOG1240|consen 1107 CGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA 1186 (1431)
T ss_pred             ccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH
Confidence              78999999999999999987521       111111  445566654    2233 555555 699999999987666


Q ss_pred             EEeec-ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec-CCcCCEEEEEecC-----CEEEEEe
Q 009993          309 TVVNG-AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI-PHTGPVNSLAFEF-----PWLVSAA  381 (520)
Q Consensus       309 ~~~~~-~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~-----~~l~s~s  381 (520)
                      ..+.. ...+.|++++.+|.+.+++.|+..|.+.+||++-+      .++..+. ++..+++.+..++     ...++++
T Consensus      1187 w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~------~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~ 1260 (1431)
T KOG1240|consen 1187 WRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR------VPILSWEHPARAPIRHVWLCPTYPQESVSVSAG 1260 (1431)
T ss_pred             HhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC------ceeecccCcccCCcceEEeeccCCCCceEEEec
Confidence            55542 24578999999999999999999999999999988      4554442 4557888887754     3444444


Q ss_pred             --CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc-cCcceeeEEEEecCC-EEEEecCCCeEEEEeCCchHhH
Q 009993          382 --GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML-HGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEI  456 (520)
Q Consensus       382 --~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~~  456 (520)
                        ..+.|.+|++.++........+.....+....+..... .+....+.+.-.+++ .+.+|+.|+.||.||.......
T Consensus      1261 ~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1261 SSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             ccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence              57889999999875544333221111111111110000 111122333333444 9999999999999999876543

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.70  E-value=9e-16  Score=131.76  Aligned_cols=231  Identities=18%  Similarity=0.248  Sum_probs=164.3

Q ss_pred             ccCCCCeEEEEEcC-------CEEEEEecCCeEEEEECCCC--cE--EEEe------eeccCEEEEe---eCCCEEEEEc
Q 009993          234 WEHEGPITSLALDL-------TRIYSGSWDMTVRVWDRALL--KC--LKVL------RHSDWVYGLA---PHDTTVASTS  293 (520)
Q Consensus       234 ~~h~~~v~~l~~~~-------~~l~s~s~dg~v~iwd~~~~--~~--~~~~------~~~~~v~~~~---~~~~~l~~~~  293 (520)
                      ..|.-+++.+.|.+       +.|++.+  ..+|+|.+...  +.  ...+      .+..+++++.   .+.+++.+++
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            46888999999922       3455544  47999998632  11  1111      1667888887   5788999999


Q ss_pred             -CCeEEEEECCCCee--eEEeecccccceEEEEecCCC-CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEE
Q 009993          294 -GSDVYIWDTNSGCL--LTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNS  369 (520)
Q Consensus       294 -d~~i~iwd~~~~~~--~~~~~~~~~~~i~~l~~s~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~  369 (520)
                       |.+..|||++++..  +++-..+|...|..++|...+ +.+++.+.||.+|+||++.....   ..+..-.....+...
T Consensus       171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS---TIIYE~p~~~~pLlR  247 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS---TIIYEDPSPSTPLLR  247 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc---eEEecCCCCCCccee
Confidence             99999999999743  343334799999999999855 57889999999999999987431   223222222567888


Q ss_pred             EEec---CCEEEEEeCC-CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC---EEEEecCC
Q 009993          370 LAFE---FPWLVSAAGD-GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD---RIVCGGEE  442 (520)
Q Consensus       370 l~~~---~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~sg~~D  442 (520)
                      ++|+   |+++++-..| ..|.|.|++.+                  ..+...+.+|...|.++.|.+.   .|.|+|+|
T Consensus       248 LswnkqDpnymATf~~dS~~V~iLDiR~P------------------~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD  309 (364)
T KOG0290|consen  248 LSWNKQDPNYMATFAMDSNKVVILDIRVP------------------CTPVARLRNHQASVNGIAWAPHSSSHICTAGDD  309 (364)
T ss_pred             eccCcCCchHHhhhhcCCceEEEEEecCC------------------CcceehhhcCcccccceEecCCCCceeeecCCc
Confidence            9994   5788888776 46999999975                  5566678899999998888664   99999999


Q ss_pred             CeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeec-cCCCcccccc
Q 009993          443 GIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMS-SKGGRTDQCS  492 (520)
Q Consensus       443 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~g~~~~~~s  492 (520)
                      ..+-+||+.+...     ......-+.=....++.++.|+ ..+..++.|.
T Consensus       310 ~qaliWDl~q~~~-----~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~  355 (364)
T KOG0290|consen  310 CQALIWDLQQMPR-----ENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF  355 (364)
T ss_pred             ceEEEEecccccc-----cCCCCchhhhhccceeeeeeecccCCCEEEEEe
Confidence            9999999986433     1111111111234557888888 4456666654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.69  E-value=1.7e-13  Score=119.53  Aligned_cols=229  Identities=18%  Similarity=0.247  Sum_probs=164.0

Q ss_pred             cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCc--eEEEEecCCCEEE-EEeCC------CcEEEEEcccC
Q 009993          144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC--TIRAVAADKKLLV-AGGTD------GFIHCWRAVEV  214 (520)
Q Consensus       144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~l~-sg~~d------g~i~vwd~~~~  214 (520)
                      ....++|+.|..-++.|..+| .+||+.+.-+...+.+.+..  .+..+-...++++ +|+.+      ..|.|||=.. 
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k-   84 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK-   84 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc-
Confidence            445689999988888888777 89999876443332222222  2222223444443 44433      4699999221 


Q ss_pred             cceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECC-CCcEEEEee---eccCEEEEeeC--CCE
Q 009993          215 LPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRA-LLKCLKVLR---HSDWVYGLAPH--DTT  288 (520)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~---~~~~v~~~~~~--~~~  288 (520)
                                  ..++.. .....+|.++.+..+.+++.-. +.|++|.+. +.+.++.+.   .+..+.++.+.  ..+
T Consensus        85 ------------~~~i~e-l~f~~~I~~V~l~r~riVvvl~-~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~  150 (346)
T KOG2111|consen   85 ------------ERCIIE-LSFNSEIKAVKLRRDRIVVVLE-NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL  150 (346)
T ss_pred             ------------CcEEEE-EEeccceeeEEEcCCeEEEEec-CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence                        122322 3467899999999998888775 689999987 556666665   45567777744  334


Q ss_pred             EEEEc--CCeEEEEECCCCee--eEEeecccccceEEEEecCCCCEEEEEeCCCe-EEEEEcccCccccceeeeeeecC-
Q 009993          289 VASTS--GSDVYIWDTNSGCL--LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA-IHMYEIINDCTEANVLLVATWIP-  362 (520)
Q Consensus       289 l~~~~--d~~i~iwd~~~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~-  362 (520)
                      |+.-+  -|.|.|-|+...+.  ...+. +|.+.|.|++.+-+|..+||+|..|+ |||||..++      ..+..+.. 
T Consensus       151 LafPg~k~GqvQi~dL~~~~~~~p~~I~-AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g------~~l~E~RRG  223 (346)
T KOG2111|consen  151 LAFPGFKTGQVQIVDLASTKPNAPSIIN-AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG------TLLQELRRG  223 (346)
T ss_pred             EEcCCCccceEEEEEhhhcCcCCceEEE-cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC------cEeeeeecC
Confidence            44433  48999999987655  34454 79999999999999999999999998 899999999      55555543 


Q ss_pred             -CcCCEEEEEecC--CEEEEEeCCCcEEEEeCCccc
Q 009993          363 -HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLL  395 (520)
Q Consensus       363 -h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~  395 (520)
                       ....|++++|+|  .+|+++|+.|+|.|+.++...
T Consensus       224 ~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  224 VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence             345799999987  599999999999999998643

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.69  E-value=5.9e-15  Score=129.78  Aligned_cols=247  Identities=17%  Similarity=0.221  Sum_probs=183.1

Q ss_pred             HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEEC-CCCcE---EEEeCCCCceEEEEecCCCEEEEEeCCCcEEE
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHL-EDGFS---IASSKPLGCTIRAVAADKKLLVAGGTDGFIHC  208 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~-~~~~~---~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~v  208 (520)
                      .+++.++||.+.|+....-|..+-+++.+.|.++|||-- +.++.   +..+.+....+....++...|+.|-..|++.-
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte   94 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE   94 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence            457888999999999999998888999999999999953 34433   33334455566666688899999999999988


Q ss_pred             EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEeeCC
Q 009993          209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHD  286 (520)
Q Consensus       209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~  286 (520)
                      +.+....         +..........|...|..+-|  ....+++.+.|..+.---.+.+..+..+.....-.++..+-
T Consensus        95 fs~sedf---------nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~  165 (404)
T KOG1409|consen   95 FALSEDF---------NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDA  165 (404)
T ss_pred             EEhhhhh---------hhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceee
Confidence            8765432         223344556689999999999  56889999999887655556655554443222222222221


Q ss_pred             CEEEEEc-CCeEEEEEC--CCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCC
Q 009993          287 TTVASTS-GSDVYIWDT--NSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH  363 (520)
Q Consensus       287 ~~l~~~~-d~~i~iwd~--~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h  363 (520)
                      .+...|. .|.|.+-.+  ..-.++.++. +|.+.+++++|.|....+++|..|..+.+||+....     .....+.+|
T Consensus       166 ~~~fvGd~~gqvt~lr~~~~~~~~i~~~~-~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~-----g~~~el~gh  239 (404)
T KOG1409|consen  166 LYAFVGDHSGQITMLKLEQNGCQLITTFN-GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK-----GTAYELQGH  239 (404)
T ss_pred             EEEEecccccceEEEEEeecCCceEEEEc-CcccceEEEEEcCCCcEEEeccccCceEEEeccCCc-----ceeeeeccc
Confidence            2445555 565555443  3445566665 799999999999999999999999999999997763     456678899


Q ss_pred             cCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993          364 TGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       364 ~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  394 (520)
                      ...|..+.+-+  ..+++++.||.|.+|+++..
T Consensus       240 ~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  240 NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             hhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            99999998854  79999999999999999753

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=4.8e-16  Score=145.05  Aligned_cols=224  Identities=20%  Similarity=0.284  Sum_probs=159.6

Q ss_pred             CCCCCCcccHH------------HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC----------cEEEE
Q 009993          122 GAGFSDDKSWK------------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG----------FSIAS  179 (520)
Q Consensus       122 ~~~~~~~~~W~------------~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~----------~~~~~  179 (520)
                      ++-+...+.|.            +.+.+|++|.++|.|+++.+++..+++|+.||+|+.|++...          .....
T Consensus       312 ~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~  391 (577)
T KOG0642|consen  312 ASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGT  391 (577)
T ss_pred             eccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccc
Confidence            34455557887            447889999999999999999999999999999999976522          22345


Q ss_pred             eCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCE---EEEEe
Q 009993          180 SKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTR---IYSGS  254 (520)
Q Consensus       180 ~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~s  254 (520)
                      +.||...++.+.  .....|++++.||+++.|+.....++.+            ....-.+.-.++.+....   .++..
T Consensus       392 l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f------------~~~~e~g~Plsvd~~ss~~a~~~~s~  459 (577)
T KOG0642|consen  392 LLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTF------------GEPKEHGYPLSVDRTSSRPAHSLASF  459 (577)
T ss_pred             eeccccceeeeeecccccceeeecCCceEEeeccCCcCcccc------------CCccccCCcceEeeccchhHhhhhhc
Confidence            678998886554  7777899999999999999766532111            111222334556663322   23333


Q ss_pred             cCCeEEEEECCCCcEEEEeee--------ccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEE
Q 009993          255 WDMTVRVWDRALLKCLKVLRH--------SDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLA  323 (520)
Q Consensus       255 ~dg~v~iwd~~~~~~~~~~~~--------~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~  323 (520)
                      .-+.--+++++....+..+..        ...+.-+.  +...+.+++. |+.|+++|..++..+.... .|...+++++
T Consensus       460 ~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~-a~~~svtsla  538 (577)
T KOG0642|consen  460 RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV-AHKDSVTSLA  538 (577)
T ss_pred             ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhee-eccceeccee
Confidence            333334445555554444431        12233333  6667777777 8999999999999998887 6999999999


Q ss_pred             ecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCc
Q 009993          324 RSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT  364 (520)
Q Consensus       324 ~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  364 (520)
                      +.|+|.+|++|+.|+.+++|.+...      .++.....|.
T Consensus       539 i~~ng~~l~s~s~d~sv~l~kld~k------~~~~es~~~r  573 (577)
T KOG0642|consen  539 IDPNGPYLMSGSHDGSVRLWKLDVK------TCVLESTAHR  573 (577)
T ss_pred             ecCCCceEEeecCCceeehhhccch------heeecccccc
Confidence            9999999999999999999999777      5555555543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.67  E-value=4.4e-14  Score=125.57  Aligned_cols=228  Identities=16%  Similarity=0.217  Sum_probs=171.6

Q ss_pred             EecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCC--eEEEEECCCC
Q 009993          190 VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDM--TVRVWDRALL  267 (520)
Q Consensus       190 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg--~v~iwd~~~~  267 (520)
                      +..+...|..|+.||. ++++...-.             ...........|.-+-|+..+++..+.+.  .+++.+++.+
T Consensus        13 ~Nqd~~~lsvGs~~Gy-k~~~~~~~~-------------k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~   78 (391)
T KOG2110|consen   13 FNQDSTLLSVGSKDGY-KIFSCSPFE-------------KCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKK   78 (391)
T ss_pred             eccceeEEEccCCCce-eEEecCchH-------------HhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccC
Confidence            4456667888888874 566653321             11111122345566667777777666554  4999999999


Q ss_pred             cEEEEeeeccCEEEEeeCCCEEEEEcCCeEEEEECCCCeeeEEeecc--cccceEEEEecCCCCEEEEE--eCCCeEEEE
Q 009993          268 KCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGA--HVGNTKSLARSHTGDFLFTG--GEDGAIHMY  343 (520)
Q Consensus       268 ~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~i~~l~~s~~~~~l~tg--~~dg~i~iw  343 (520)
                      ..+..+..+..|.++..+.+.++++-...|+|||+++.+.+.++..-  +...+.++.+++.+.+++--  ...|.|.+|
T Consensus        79 ~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~  158 (391)
T KOG2110|consen   79 TTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF  158 (391)
T ss_pred             ceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence            99999999999999999999999988777999999999999888743  45567777777777788853  346899999


Q ss_pred             EcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCc-EEEEeCCcccccCCCCCCCceeeeeecCCCccccc
Q 009993          344 EIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGK-LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH  420 (520)
Q Consensus       344 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (520)
                      |..+-      .++..+..|.+++.+++|++  .+|||+|+.|+ |||+.+.++.+......+..               
T Consensus       159 d~~nl------~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~---------------  217 (391)
T KOG2110|consen  159 DTINL------QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY---------------  217 (391)
T ss_pred             Ecccc------eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce---------------
Confidence            99988      78889999999999999965  79999999998 69999988755544333221               


Q ss_pred             CcceeeEEEEec--CCEEEEecCCCeEEEEeCCchH
Q 009993          421 GFECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQAF  454 (520)
Q Consensus       421 ~~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~~~~  454 (520)
                        ...+.+++|+  +.+|++.|+.++|++|.++...
T Consensus       218 --~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  218 --PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             --eeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence              2345555554  4599999999999999997644

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.67  E-value=2.4e-15  Score=142.80  Aligned_cols=257  Identities=13%  Similarity=0.165  Sum_probs=183.5

Q ss_pred             hhhhcCCCCCCCCCCCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCC
Q 009993          108 YCERWGLPIASAPLGAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPL  183 (520)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~  183 (520)
                      +-..|. |+++.++........+++    .+.++|+||++.|+|++|+.||+.+++|+.|+.|.+|+-.-...++  ..|
T Consensus        16 ~d~afk-PDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk--YSH   92 (1081)
T KOG1538|consen   16 NDIAFK-PDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK--YSH   92 (1081)
T ss_pred             heeEEC-CCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee--ecc
Confidence            344555 666655544444444444    6789999999999999999999999999999999999865332222  257


Q ss_pred             CceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeE
Q 009993          184 GCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTV  259 (520)
Q Consensus       184 ~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v  259 (520)
                      +..|.|++  |-...|++++.+ ..-+|......              +. -......|.+.+|  ||.+++.|-.||+|
T Consensus        93 ~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~--------------V~-K~kss~R~~~CsWtnDGqylalG~~nGTI  156 (1081)
T KOG1538|consen   93 NDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS--------------VS-KHKSSSRIICCSWTNDGQYLALGMFNGTI  156 (1081)
T ss_pred             CCeeeEeecCchHHHhhhcchh-hccccChhhhh--------------HH-hhhhheeEEEeeecCCCcEEEEeccCceE
Confidence            77777776  778889988864 35578754321              11 1123456777888  88999999999999


Q ss_pred             EEEECCCCcEEEEee---eccCEEEEe--eC-----CCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCC
Q 009993          260 RVWDRALLKCLKVLR---HSDWVYGLA--PH-----DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG  328 (520)
Q Consensus       260 ~iwd~~~~~~~~~~~---~~~~v~~~~--~~-----~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~  328 (520)
                      .+-+-...+.+..-+   ...+|.++.  |.     ...+++.. +.++.++.+.. +.+..-. .-.-...|+.+-++|
T Consensus       157 siRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r-~L~FdP~CisYf~NG  234 (1081)
T KOG1538|consen  157 SIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDR-ALNFDPCCISYFTNG  234 (1081)
T ss_pred             EeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeecccc-cCCCCchhheeccCC
Confidence            998754433333333   567888887  22     23566666 67777777653 3332111 123345688999999


Q ss_pred             CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCC
Q 009993          329 DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       329 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~  392 (520)
                      .++..|+.|+.+++|-- .+      ..+.++......|+.++..|  ++++.|+.||+|..|++-
T Consensus       235 Ey~LiGGsdk~L~~fTR-~G------vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  235 EYILLGGSDKQLSLFTR-DG------VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             cEEEEccCCCceEEEee-cC------eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            99999999999999964 44      45666666778999999976  699999999999999875

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.66  E-value=2.4e-14  Score=124.87  Aligned_cols=227  Identities=14%  Similarity=0.103  Sum_probs=173.9

Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC---cEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCc
Q 009993          141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG---FSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVL  215 (520)
Q Consensus       141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~  215 (520)
                      -..+|+|.+|++|+..+|.+-....|.||.....   +...++..|...|+.+.  +..+.|++++.|..-++|....+ 
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~-   87 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG-   87 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC-
Confidence            4578999999999999999999999999998655   46678888888777665  88999999999999999987433 


Q ss_pred             ceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEE---e--eeccCEEEEe--eCC
Q 009993          216 PHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKV---L--RHSDWVYGLA--PHD  286 (520)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~---~--~~~~~v~~~~--~~~  286 (520)
                               ...++...+..++..++++.|  ..+.+++||.-..|.||-++...--..   +  .+...|++++  +++
T Consensus        88 ---------~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn  158 (361)
T KOG1523|consen   88 ---------GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN  158 (361)
T ss_pred             ---------CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc
Confidence                     335677778889999999999  668999999999999998775543321   2  2677889998  788


Q ss_pred             CEEEEEc-CCeEEEEECC-----C-------------CeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEccc
Q 009993          287 TTVASTS-GSDVYIWDTN-----S-------------GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIN  347 (520)
Q Consensus       287 ~~l~~~~-d~~i~iwd~~-----~-------------~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~  347 (520)
                      -++++|+ |+..++|..-     .             |+.+.++. ...+.+..+.|+|+|..|+-.+.|+++.+-|...
T Consensus       159 VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~  237 (361)
T KOG1523|consen  159 VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG  237 (361)
T ss_pred             ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence            8889999 9999988642     1             22233332 3567899999999999999999999999999877


Q ss_pred             CccccceeeeeeecCCcCCEEEEEe-cCCEEEEEeCC
Q 009993          348 DCTEANVLLVATWIPHTGPVNSLAF-EFPWLVSAAGD  383 (520)
Q Consensus       348 ~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~d  383 (520)
                      +..     .+.......-+..++.| +.+.++.++.|
T Consensus       238 p~~-----~v~~~~~~~lP~ls~~~ise~~vv~ag~~  269 (361)
T KOG1523|consen  238 PSE-----RVQSVATAQLPLLSVSWISENSVVAAGYD  269 (361)
T ss_pred             Cch-----hccchhhccCCceeeEeecCCceeecCCC
Confidence            631     22233233356777777 44555555555

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.65  E-value=6.2e-15  Score=132.37  Aligned_cols=218  Identities=23%  Similarity=0.268  Sum_probs=159.4

Q ss_pred             CCCCCCCCCCcccHH-------------HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECC--------C---
Q 009993          118 SAPLGAGFSDDKSWK-------------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLE--------D---  173 (520)
Q Consensus       118 ~~~~~~~~~~~~~W~-------------~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~--------~---  173 (520)
                      .+..+.++.+.++|+             +....|..|..+|+++.|+|+|++|++|+.+|.|.+|...        +   
T Consensus        28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~  107 (434)
T KOG1009|consen   28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD  107 (434)
T ss_pred             ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence            344556678889998             3467899999999999999999999999999999999865        2   


Q ss_pred             -----CcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc
Q 009993          174 -----GFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD  246 (520)
Q Consensus       174 -----~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  246 (520)
                           ....+.+.+|...++.++  +++.++++|+.|..+++||+..|.             ....+.+|...|..++||
T Consensus       108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~-------------l~~~~~dh~~yvqgvawD  174 (434)
T KOG1009|consen  108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ-------------LLAILDDHEHYVQGVAWD  174 (434)
T ss_pred             hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce-------------eEeeccccccccceeecc
Confidence                 123455677888887665  999999999999999999998874             455666788888888884


Q ss_pred             C--CEEEEEecCCeEEEEECCCCcEEE-----------------------------------------------------
Q 009993          247 L--TRIYSGSWDMTVRVWDRALLKCLK-----------------------------------------------------  271 (520)
Q Consensus       247 ~--~~l~s~s~dg~v~iwd~~~~~~~~-----------------------------------------------------  271 (520)
                      +  .++++-+.|...+.+.+...+.++                                                     
T Consensus       175 pl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~  254 (434)
T KOG1009|consen  175 PLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKV  254 (434)
T ss_pred             hhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeee
Confidence            4  556665555544443321110000                                                     


Q ss_pred             ----------Eee-------------eccCEEEEe--------------------eCCCEEEEEcCCeEEEEECCCCeee
Q 009993          272 ----------VLR-------------HSDWVYGLA--------------------PHDTTVASTSGSDVYIWDTNSGCLL  308 (520)
Q Consensus       272 ----------~~~-------------~~~~v~~~~--------------------~~~~~l~~~~d~~i~iwd~~~~~~~  308 (520)
                                .+.             ...++..+.                    |..-.++.++.+.|++||.++..++
T Consensus       255 g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~  334 (434)
T KOG1009|consen  255 GGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPL  334 (434)
T ss_pred             CCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccce
Confidence                      000             000000000                    1233466677888999999998888


Q ss_pred             EEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993          309 TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  348 (520)
Q Consensus       309 ~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~  348 (520)
                      ....+-|-..++.++|+++|..++..+.||...+-.+...
T Consensus       335 ~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~  374 (434)
T KOG1009|consen  335 AVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW  374 (434)
T ss_pred             EEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence            8888789999999999999999999999999888777666

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=1.1e-13  Score=136.06  Aligned_cols=291  Identities=13%  Similarity=0.128  Sum_probs=196.3

Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCeEEEEECCC--C--cEEEEeCCCCce--EEEEecCCCEEEEEeCCCcEEEEEcc
Q 009993          139 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED--G--FSIASSKPLGCT--IRAVAADKKLLVAGGTDGFIHCWRAV  212 (520)
Q Consensus       139 ~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~--~--~~~~~~~~~~~~--v~~~~~~~~~l~sg~~dg~i~vwd~~  212 (520)
                      ..|+-.++|.+++|+++++|+|..||.|.+|.--.  +  .....+.=|...  +.+++++|.+|++|+..|.+.+|.+.
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE  281 (792)
T ss_pred             hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence            35666799999999999999999999999996432  1  122334445444  45566999999999999999999998


Q ss_pred             cCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeec------------c-
Q 009993          213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHS------------D-  277 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~------------~-  277 (520)
                      ++.              ..-++.-.++|..+.+  |+++......|..|.+....+.....++.+-            + 
T Consensus       282 T~~--------------kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l  347 (792)
T KOG1963|consen  282 TGK--------------KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSL  347 (792)
T ss_pred             CCC--------------cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccc
Confidence            874              2234456788999999  7788888888999999988766555554411            1 


Q ss_pred             -CEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeec----------ccccceEEEEecCCCCEEEEEe--------CC
Q 009993          278 -WVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNG----------AHVGNTKSLARSHTGDFLFTGG--------ED  337 (520)
Q Consensus       278 -~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~----------~~~~~i~~l~~s~~~~~l~tg~--------~d  337 (520)
                       ...++.|..+.++-.+ .|.|.+||+-+...+..+..          .+.-.+++++.+-.|.+++|+-        .|
T Consensus       348 ~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~  427 (792)
T KOG1963|consen  348 TTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFD  427 (792)
T ss_pred             ceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccC
Confidence             1223446444444444 89999999988877665541          1233577888888899998863        23


Q ss_pred             C--eEEEEEcccCccccceeeeeeecCCcCCEEEEEec-C---CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeee
Q 009993          338 G--AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE-F---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE  411 (520)
Q Consensus       338 g--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  411 (520)
                      |  .+++|-.......... ......+|...+....+. +   ...++++.||.++||-+............-       
T Consensus       428 ~e~~LKFW~~n~~~kt~~L-~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W-------  499 (792)
T KOG1963|consen  428 GEVSLKFWQYNPNSKTFIL-NTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNW-------  499 (792)
T ss_pred             ceEEEEEEEEcCCcceeEE-EEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccce-------
Confidence            3  4788987665332211 122345787777766663 2   389999999999999996543332211111       


Q ss_pred             cCCCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEeCCch
Q 009993          412 VEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       412 ~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~  453 (520)
                        .+..+-.-|..++.+..|+++ .+++.+.|++|.+||..+.
T Consensus       500 --~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~  540 (792)
T KOG1963|consen  500 --TCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTK  540 (792)
T ss_pred             --EEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCCh
Confidence              111111124445555555554 6777778899999999985

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.65  E-value=2.7e-15  Score=127.20  Aligned_cols=245  Identities=16%  Similarity=0.222  Sum_probs=170.9

Q ss_pred             cceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee--eccCEEEEe--eCCCEEEEEcCCeEEEEEC
Q 009993          228 NTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA--PHDTTVASTSGSDVYIWDT  302 (520)
Q Consensus       228 ~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~--~~~~~l~~~~d~~i~iwd~  302 (520)
                      .+.+.+.+|.+.|+++.| ...+|++|..-|.|++|++.+.+....++  +...|+.+.  +++.+..-|-|..+.+|++
T Consensus         5 dP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~i   84 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTI   84 (323)
T ss_pred             CCeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEc
Confidence            356677799999999999 55789999999999999999988877776  677888887  5544444455889999988


Q ss_pred             CCCeeeEE--------------ee--------------------------------------cccccceEEEEecC-CCC
Q 009993          303 NSGCLLTV--------------VN--------------------------------------GAHVGNTKSLARSH-TGD  329 (520)
Q Consensus       303 ~~~~~~~~--------------~~--------------------------------------~~~~~~i~~l~~s~-~~~  329 (520)
                      ..+..+..              +.                                      .+..+.+.+..+.. ++.
T Consensus        85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s  164 (323)
T KOG0322|consen   85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS  164 (323)
T ss_pred             cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence            65321110              00                                      00122344444322 222


Q ss_pred             --EEEEEeCCCeEEEEEcccCccc----cceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCC
Q 009993          330 --FLFTGGEDGAIHMYEIINDCTE----ANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPT  401 (520)
Q Consensus       330 --~l~tg~~dg~i~iwd~~~~~~~----~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~  401 (520)
                        ++++|.++|.+.+||+.++...    ...+.......|..+|.++.|++  +.=++|+.+..+..|.+........  
T Consensus       165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq--  242 (323)
T KOG0322|consen  165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ--  242 (323)
T ss_pred             eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccc--
Confidence              5678999999999999987322    11233444567999999999976  5667888888999999875311110  


Q ss_pred             CCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeee
Q 009993          402 SGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEM  481 (520)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (520)
                                 -.....+......-..+.+|++.+||+|+||+||||..++...+..+..          ++..+..++|
T Consensus       243 -----------~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky----------Hsagvn~vAf  301 (323)
T KOG0322|consen  243 -----------IRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY----------HSAGVNAVAF  301 (323)
T ss_pred             -----------ccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh----------hhcceeEEEe
Confidence                       1111122333344556778899999999999999999998877665443          3455789999


Q ss_pred             ccCCCccccccccc
Q 009993          482 SSKGGRTDQCSVAA  495 (520)
Q Consensus       482 s~~g~~~~~~s~~~  495 (520)
                      +||-..+|+++.++
T Consensus       302 spd~~lmAaaskD~  315 (323)
T KOG0322|consen  302 SPDCELMAAASKDA  315 (323)
T ss_pred             CCCCchhhhccCCc
Confidence            99988888877554

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.64  E-value=5.6e-13  Score=127.62  Aligned_cols=267  Identities=10%  Similarity=0.118  Sum_probs=160.9

Q ss_pred             EEEEeCCCeEEEEECCC-Cc--EEEEeCC-CCceEEEEecCCCEEEEEe-CCCcEEEEEccc-CcceeeeccCCccccce
Q 009993          157 LFTSGYDSIVRMWHLED-GF--SIASSKP-LGCTIRAVAADKKLLVAGG-TDGFIHCWRAVE-VLPHLFDISGSEKQNTQ  230 (520)
Q Consensus       157 l~sgs~dg~v~vwd~~~-~~--~~~~~~~-~~~~v~~~~~~~~~l~sg~-~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~  230 (520)
                      +++...|+.|++|++.+ ++  .+..+.. .......++|++++|++++ .++.|.+|++.. +..           ...
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-----------~~~   73 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-----------TFA   73 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-----------EEe
Confidence            34447799999999964 33  4444532 2234457789999887765 478899999862 211           011


Q ss_pred             EEeccCCCCeEEEEE--cCCEEEEEec-CCeEEEEECCCC----cEEEEeeeccCEE--EEeeCCCEEEEEc--CCeEEE
Q 009993          231 FRLWEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDRALL----KCLKVLRHSDWVY--GLAPHDTTVASTS--GSDVYI  299 (520)
Q Consensus       231 ~~~~~h~~~v~~l~~--~~~~l~s~s~-dg~v~iwd~~~~----~~~~~~~~~~~v~--~~~~~~~~l~~~~--d~~i~i  299 (520)
                      ... ...+....+++  +++++++++. ++.|.+|++.+.    +.+..+.+.....  .+.|+++++++++  ++.|.+
T Consensus        74 ~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v  152 (330)
T PRK11028         74 AES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRL  152 (330)
T ss_pred             eee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEE
Confidence            111 12234567777  5677777764 889999999642    2223232222222  3558898887666  699999


Q ss_pred             EECCCCeeeEE-----eecccccceEEEEecCCCCEEEEEeC-CCeEEEEEcccCccccceeeeeeecC------CcCCE
Q 009993          300 WDTNSGCLLTV-----VNGAHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDCTEANVLLVATWIP------HTGPV  367 (520)
Q Consensus       300 wd~~~~~~~~~-----~~~~~~~~i~~l~~s~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~------h~~~v  367 (520)
                      ||+.+...+..     ...........+.|+|+|++++++.+ ++.|.+|++.....  ....+..+..      +....
T Consensus       153 ~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~  230 (330)
T PRK11028        153 FTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG--EIECVQTLDMMPADFSDTRWA  230 (330)
T ss_pred             EEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC--CEEEEEEEecCCCcCCCCccc
Confidence            99986432211     11112345678999999999988876 89999999974210  1122222221      11223


Q ss_pred             EEEEecC--CEEEEEe-CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEec-CCC
Q 009993          368 NSLAFEF--PWLVSAA-GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGG-EEG  443 (520)
Q Consensus       368 ~~l~~~~--~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~-~Dg  443 (520)
                      ..+.++|  ++++++. .++.|.+|++.......         .+..     ....+....-..+++++++|++++ .++
T Consensus       231 ~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~---------~~~~-----~~~~~~~p~~~~~~~dg~~l~va~~~~~  296 (330)
T PRK11028        231 ADIHITPDGRHLYACDRTASLISVFSVSEDGSVL---------SFEG-----HQPTETQPRGFNIDHSGKYLIAAGQKSH  296 (330)
T ss_pred             eeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE---------EEeE-----EEeccccCCceEECCCCCEEEEEEccCC
Confidence            4577766  5777775 47899999996531100         0000     000111222356778888777665 489


Q ss_pred             eEEEEeCC
Q 009993          444 IVRIWNFS  451 (520)
Q Consensus       444 ~v~iwd~~  451 (520)
                      +|.+|+++
T Consensus       297 ~v~v~~~~  304 (330)
T PRK11028        297 HISVYEID  304 (330)
T ss_pred             cEEEEEEc
Confidence            99999885

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.64  E-value=2.6e-14  Score=132.75  Aligned_cols=214  Identities=15%  Similarity=0.163  Sum_probs=149.2

Q ss_pred             cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEE------EEeCCCCceEEEEe-----cCCCEEEEEeCCCcEEEEEcc
Q 009993          144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI------ASSKPLGCTIRAVA-----ADKKLLVAGGTDGFIHCWRAV  212 (520)
Q Consensus       144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~------~~~~~~~~~v~~~~-----~~~~~l~sg~~dg~i~vwd~~  212 (520)
                      .+....++-.|++|+-.- ...+.+|+...+..+      ..+++....+.++.     +.+--++.|-.-|.|.+.|..
T Consensus       125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~  203 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI  203 (636)
T ss_pred             ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence            344444555566665443 234788887643221      22344444455553     667778889888999888854


Q ss_pred             cCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCC--------------CcEEEEee-
Q 009993          213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRAL--------------LKCLKVLR-  274 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~--------------~~~~~~~~-  274 (520)
                      .....         ........-.+..|+|+.|   +...++.+-.+|.+.+||..-              +....... 
T Consensus       204 ~~~~s---------klfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~  274 (636)
T KOG2394|consen  204 NFEVS---------KLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTS  274 (636)
T ss_pred             hhHHH---------HhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeee
Confidence            32100         0000001112478999999   667788888899999997531              11111111 


Q ss_pred             --------------eccCEEEE--eeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCC
Q 009993          275 --------------HSDWVYGL--APHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED  337 (520)
Q Consensus       275 --------------~~~~v~~~--~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d  337 (520)
                                    ..+.|+.+  ++||++|++.+ ||.++|||..+.+.+..++ ..-+...|++|+|||++|++|++|
T Consensus       275 ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk-SYFGGLLCvcWSPDGKyIvtGGED  353 (636)
T KOG2394|consen  275 KSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK-SYFGGLLCVCWSPDGKYIVTGGED  353 (636)
T ss_pred             eccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH-hhccceEEEEEcCCccEEEecCCc
Confidence                          12234433  38999999999 9999999999988877766 367789999999999999999999


Q ss_pred             CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC
Q 009993          338 GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF  374 (520)
Q Consensus       338 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  374 (520)
                      .-|.||.+...      +.+..-.+|..+|..|+|+|
T Consensus       354 DLVtVwSf~er------RVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  354 DLVTVWSFEER------RVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             ceEEEEEeccc------eEEEeccccccceeeEeecc
Confidence            99999999998      78999999999999999998

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=5.9e-15  Score=137.26  Aligned_cols=214  Identities=17%  Similarity=0.178  Sum_probs=155.0

Q ss_pred             hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEe-CCCCceEEEEe----cCCCEEEEEeCCCcEEE
Q 009993          134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS-KPLGCTIRAVA----ADKKLLVAGGTDGFIHC  208 (520)
Q Consensus       134 ~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~----~~~~~l~sg~~dg~i~v  208 (520)
                      +.+.|.||++-|.|+.|+.+|.+|++||.|-.+.|||.-..+.+..+ .+|...|.+..    .++..+++|+.|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            46789999999999999999999999999999999999888777776 48999888876    46778999999999999


Q ss_pred             EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCc-E------EEEee--ec
Q 009993          209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLK-C------LKVLR--HS  276 (520)
Q Consensus       209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~-~------~~~~~--~~  276 (520)
                      +|+........+   .........+..|...|.-|+.   .++.+.+++.||+++-+|++... |      ...+.  +.
T Consensus       122 fdl~~~~~~~~d---~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~  198 (758)
T KOG1310|consen  122 FDLDSSKEGGMD---HGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP  198 (758)
T ss_pred             Eecccccccccc---cCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence            998753211110   1122344556678999999988   44889999999999999998632 1      11111  11


Q ss_pred             c--CEEE--Ee-eCCCEEEEEc-CCeEEEEECCC--------C----------eeeEEeecccc-----------cceEE
Q 009993          277 D--WVYG--LA-PHDTTVASTS-GSDVYIWDTNS--------G----------CLLTVVNGAHV-----------GNTKS  321 (520)
Q Consensus       277 ~--~v~~--~~-~~~~~l~~~~-d~~i~iwd~~~--------~----------~~~~~~~~~~~-----------~~i~~  321 (520)
                      .  ...+  ++ .+..+|++|+ |-..++||.+.        +          .++..+..+|.           ..++-
T Consensus       199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~  278 (758)
T KOG1310|consen  199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY  278 (758)
T ss_pred             hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence            1  1223  33 4567888888 88899999432        1          12333433343           12566


Q ss_pred             EEecCCCCEEEEEeCCCeEEEEEcccCcc
Q 009993          322 LARSHTGDFLFTGGEDGAIHMYEIINDCT  350 (520)
Q Consensus       322 l~~s~~~~~l~tg~~dg~i~iwd~~~~~~  350 (520)
                      +.|+|+|.-|++.-..-.|++||+..++.
T Consensus       279 vtfnpNGtElLvs~~gEhVYlfdvn~~~~  307 (758)
T KOG1310|consen  279 VTFNPNGTELLVSWGGEHVYLFDVNEDKS  307 (758)
T ss_pred             EEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence            78999998888776777899999977643

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=1.1e-14  Score=131.63  Aligned_cols=191  Identities=21%  Similarity=0.232  Sum_probs=141.8

Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccC
Q 009993          146 LTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISG  223 (520)
Q Consensus       146 ~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~  223 (520)
                      .+++|+++|..|++|+.||++|||+..+...+.....|...|.++.  ||++.|++-+.| ..+||++.++......  .
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~--t  224 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK--T  224 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc--C
Confidence            7899999999999999999999999998888888888888887655  999999999999 8999999988321100  0


Q ss_pred             CccccceEEeccCCCCeEEEEE--cC---CE-EE-EEecCCeEEEEECCCCcE---E---EEeeeccCEEEEe--eCCCE
Q 009993          224 SEKQNTQFRLWEHEGPITSLAL--DL---TR-IY-SGSWDMTVRVWDRALLKC---L---KVLRHSDWVYGLA--PHDTT  288 (520)
Q Consensus       224 ~~~~~~~~~~~~h~~~v~~l~~--~~---~~-l~-s~s~dg~v~iwd~~~~~~---~---~~~~~~~~v~~~~--~~~~~  288 (520)
                      +         ..-......+.|  ++   .+ ++ ....-+.|+.||+....-   +   +.+.....|.+++  .+|++
T Consensus       225 ~---------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf  295 (398)
T KOG0771|consen  225 P---------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF  295 (398)
T ss_pred             C---------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE
Confidence            0         111122233334  22   12 22 222334566655543221   1   1111334566665  99999


Q ss_pred             EEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993          289 VASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  348 (520)
Q Consensus       289 l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~  348 (520)
                      ++.|+ +|.|.|++..+.+.+..++..|...|+.+.|+|+.+++++-+.|..+.+..+.-.
T Consensus       296 ~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd  356 (398)
T KOG0771|consen  296 LALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD  356 (398)
T ss_pred             EEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence            99999 9999999999999999999899999999999999999999999999998887653

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.62  E-value=3.7e-16  Score=151.84  Aligned_cols=260  Identities=19%  Similarity=0.237  Sum_probs=189.3

Q ss_pred             EEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEE
Q 009993          176 SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIY  251 (520)
Q Consensus       176 ~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~  251 (520)
                      .++.+.+|-..|+|..  ..|.++++|+.|..++||..+++             .+.....||.+.|+.++.  +..+++
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~-------------~~lAs~rGhs~ditdlavs~~n~~ia  248 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA-------------RCLASCRGHSGDITDLAVSSNNTMIA  248 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccch-------------hhhccCCCCccccchhccchhhhhhh
Confidence            3445678988887765  67899999999999999998775             366788899999999999  556789


Q ss_pred             EEecCCeEEEEECCCCcEEEEee-eccCEEEEeeCCCEEEEEcCCeEEEEECCCCeeeEE---eecccccceEEEEecCC
Q 009993          252 SGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTV---VNGAHVGNTKSLARSHT  327 (520)
Q Consensus       252 s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~---~~~~~~~~i~~l~~s~~  327 (520)
                      ++|.|..|++|.+.++..+..+. |.+.|++++..... .++.||++++||.+-...+..   .......-+.++.|..+
T Consensus       249 aaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~  327 (1113)
T KOG0644|consen  249 AASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENN  327 (1113)
T ss_pred             hcccCceEEEEecCCCchHHHHhccccceeeeccCccc-cCCCCCceEeccccccccccCCCCCCcccccceeeeecccc
Confidence            99999999999999999999887 99999999955544 333389999999982111111   01112345667778888


Q ss_pred             CCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEec---CCEEEEEeCCCcEEEEeCCcccccCCCCCCC
Q 009993          328 GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE---FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGK  404 (520)
Q Consensus       328 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  404 (520)
                      +..++||+.|+.-..|.+....            .+...+.-+.+.   ..+.+++-.+..+.+|++.++          
T Consensus       328 ~~~f~Tgs~d~ea~n~e~~~l~------------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g----------  385 (1113)
T KOG0644|consen  328 GDRFLTGSRDGEARNHEFEQLA------------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG----------  385 (1113)
T ss_pred             ccccccccCCcccccchhhHhh------------hhccceEEEeccccccccceeeeeeeEeeeeecccc----------
Confidence            8999999999999888765431            111111112221   256677778889999999884          


Q ss_pred             ceeeeeecCCCcccccCcceeeEEEEecC---CEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeee
Q 009993          405 RVSRVIEVEPPQRMLHGFECNLLSVDIGA---DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEM  481 (520)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (520)
                               .....+.+|...++.+.+++   ....+++.||...|||+-.+..++...          .-+-......|
T Consensus       386 ---------~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~----------~gh~kl~d~kF  446 (1113)
T KOG0644|consen  386 ---------QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF----------IGHGKLVDGKF  446 (1113)
T ss_pred             ---------hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee----------cccceeecccc
Confidence                     33444566666655555443   378899999999999999887665432          11344577899


Q ss_pred             ccCCCcccc
Q 009993          482 SSKGGRTDQ  490 (520)
Q Consensus       482 s~~g~~~~~  490 (520)
                      |+||..++.
T Consensus       447 Sqdgts~~l  455 (1113)
T KOG0644|consen  447 SQDGTSIAL  455 (1113)
T ss_pred             CCCCceEec
Confidence            999987765

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=7e-14  Score=124.91  Aligned_cols=301  Identities=16%  Similarity=0.138  Sum_probs=194.0

Q ss_pred             EeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceE-EeccCCCCeEEEEE--cCCEEEEE
Q 009993          179 SSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF-RLWEHEGPITSLAL--DLTRIYSG  253 (520)
Q Consensus       179 ~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~--~~~~l~s~  253 (520)
                      .+.+|.+.|.++.  .++.+|++|+.|..+++|++.....       ....+++. .-..|...|.|++|  ....+++|
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~-------~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG  123 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV-------RKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSG  123 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh-------hcCCCCceeccCccccceEEEEEccCCeeEecC
Confidence            3457877777665  7889999999999999999865321       01111222 22346689999999  44679999


Q ss_pred             ecCCeEEEEECCCCcEEEEeeecc---CEEEEe--eCCCEEEEEc-CCeEEEEECCCCe-eeEEee-cccccceEEEEec
Q 009993          254 SWDMTVRVWDRALLKCLKVLRHSD---WVYGLA--PHDTTVASTS-GSDVYIWDTNSGC-LLTVVN-GAHVGNTKSLARS  325 (520)
Q Consensus       254 s~dg~v~iwd~~~~~~~~~~~~~~---~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~-~~~~~~-~~~~~~i~~l~~s  325 (520)
                      ..+++|...|+++.+.+.++.|.+   .|+.+.  |..+.+++.+ ++.|.+||.+..+ +...+. .........+.|+
T Consensus       124 ~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~  203 (609)
T KOG4227|consen  124 ERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFH  203 (609)
T ss_pred             CCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeec
Confidence            999999999999999999998655   888887  7788888888 8999999998765 222221 1245677889999


Q ss_pred             CCC-CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCc------CCEEEEEecC--CEEEEEeCCCcEEEEeCCcccc
Q 009993          326 HTG-DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT------GPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLR  396 (520)
Q Consensus       326 ~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~------~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~  396 (520)
                      |.. .+|++.+..+-+.+||.+....     ++....+..      ..-.++.|+|  ..|++--....-.+||+-+...
T Consensus       204 P~~P~Li~~~~~~~G~~~~D~R~~~~-----~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~  278 (609)
T KOG4227|consen  204 PETPALILVNSETGGPNVFDRRMQAR-----PVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC  278 (609)
T ss_pred             CCCceeEEeccccCCCCceeeccccc-----hHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc
Confidence            954 5788888999999999988742     222222211      1124556754  4555555444555666654211


Q ss_pred             cCCCCCCCceeeeeecC-CCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEeCCchHhHHHH-------------hh
Q 009993          397 SGRPTSGKRVSRVIEVE-PPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEIERR-------------AR  461 (520)
Q Consensus       397 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~~~~~-------------~~  461 (520)
                      ..           .... .+...+  ....+-++.|-++ .+++|+.+-.|++|.+.......-.             .-
T Consensus       279 ~V-----------~k~D~N~~GY~--N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~  345 (609)
T KOG4227|consen  279 FV-----------LKSDHNPNGYC--NIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIF  345 (609)
T ss_pred             ee-----------EeccCCCCcce--eeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhhe
Confidence            10           0000 000001  1123344445454 6999999999999998643221110             01


Q ss_pred             hhcccccchhhhhccceeeeccCCCcccccccccccCCCCCCcceeeeccc
Q 009993          462 ALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKR  512 (520)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~~~~~~~~~~~~~~~~~~~  512 (520)
                      ........+.++.-+.++.|+|....|.+..+.        ....||..-|
T Consensus       346 i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE--------~~~KlWS~~r  388 (609)
T KOG4227|consen  346 IEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVE--------NSFKLWSDHR  388 (609)
T ss_pred             ecceeEEEecccccccceeecCCcceEeccchh--------hheecccccc
Confidence            112223456667778999999999888876642        2236776543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.58  E-value=2.9e-14  Score=134.81  Aligned_cols=235  Identities=19%  Similarity=0.216  Sum_probs=155.2

Q ss_pred             EecCCCEEEE--EeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEEC
Q 009993          190 VAADKKLLVA--GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDR  264 (520)
Q Consensus       190 ~~~~~~~l~s--g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~  264 (520)
                      ++.+...+++  ++..|.|.|+++.......        ....-.+ .....|+++.|   |...|++++.||.|++|.+
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLP--------Dgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~  657 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLP--------DGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRL  657 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCC--------ccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEe
Confidence            3344455554  3556899999986543110        1111111 24567999999   5689999999999999998


Q ss_pred             CCCc-------EEEEee-eccCEEEEeeC---CCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEE
Q 009993          265 ALLK-------CLKVLR-HSDWVYGLAPH---DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLF  332 (520)
Q Consensus       265 ~~~~-------~~~~~~-~~~~v~~~~~~---~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~  332 (520)
                      ..+.       ....+. |...|+++..+   ...|++++ |.+|++||+.+++....+. +|.+.|..++|+|+|+.++
T Consensus       658 ~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~-gHtdqIf~~AWSpdGr~~A  736 (1012)
T KOG1445|consen  658 TANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV-GHTDQIFGIAWSPDGRRIA  736 (1012)
T ss_pred             ccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec-cCcCceeEEEECCCCccee
Confidence            7543       233343 88889998844   45677777 9999999999999888887 7999999999999999999


Q ss_pred             EEeCCCeEEEEEcccCccccceeeeeeecCCcC-CEEEEEe--cCCEEEEEeCC----CcEEEEeCCcccccCCCCCCCc
Q 009993          333 TGGEDGAIHMYEIINDCTEANVLLVATWIPHTG-PVNSLAF--EFPWLVSAAGD----GKLSLIDVRKLLRSGRPTSGKR  405 (520)
Q Consensus       333 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~-~v~~l~~--~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~  405 (520)
                      +.+.||+|++|+.+...     .+++.-.+..+ .--.|.|  ++.++++.+.|    ..|.+||..+.....      -
T Consensus       737 tVcKDg~~rVy~Prs~e-----~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~p------l  805 (1012)
T KOG1445|consen  737 TVCKDGTLRVYEPRSRE-----QPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRP------L  805 (1012)
T ss_pred             eeecCceEEEeCCCCCC-----CccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCc------c
Confidence            99999999999998874     23333222111 1123444  67777776655    568888877632100      0


Q ss_pred             eeeeeecCCCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEeCCch
Q 009993          406 VSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~  453 (520)
                      ........+        ..-+-..+++.. +++||-.|..|.+|++-..
T Consensus       806 ~t~~lDvap--------s~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e  846 (1012)
T KOG1445|consen  806 YTQVLDVAP--------SPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE  846 (1012)
T ss_pred             eeeeecccC--------ccccccccCCCceEEEecCCCceEEEEEecCC
Confidence            000000000        011112233333 8889999999999998654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.57  E-value=7.6e-15  Score=133.94  Aligned_cols=223  Identities=14%  Similarity=0.165  Sum_probs=171.1

Q ss_pred             cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeec
Q 009993          144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDI  221 (520)
Q Consensus       144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  221 (520)
                      .-+.+.++.+|++|+.|+.-|.|-.+|..++.....+... ..|.++.  .+..++|+ .....++|||-..        
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LHneq~~AV-AQK~y~yvYD~~G--------  200 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-ETVRDVTFLHNEQFFAV-AQKKYVYVYDNNG--------  200 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh-hhhhhhhhhcchHHHHh-hhhceEEEecCCC--------
Confidence            3467889999999999999999999999999887776432 2333333  34444444 4556788888432        


Q ss_pred             cCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CC
Q 009993          222 SGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GS  295 (520)
Q Consensus       222 ~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~  295 (520)
                            .....+..| ..|..+.|=+  =+|++++..|.++.-|+.+|+.+..+. ..+.+..+.  |.+..+-.|. .|
T Consensus       201 ------tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnG  273 (545)
T KOG1272|consen  201 ------TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNG  273 (545)
T ss_pred             ------cEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCc
Confidence                  244445444 5677788833  457888899999999999999998887 444555554  7777888888 89


Q ss_pred             eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCC
Q 009993          296 DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP  375 (520)
Q Consensus       296 ~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  375 (520)
                      +|.+|.+...+++..+. .|.++|.++++.++|.+++|.+.|..++|||+++.      ..+.++.. .-+...++++..
T Consensus       274 tVSlWSP~skePLvKiL-cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~------~ql~t~~t-p~~a~~ls~Sqk  345 (545)
T KOG1272|consen  274 TVSLWSPNSKEPLVKIL-CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF------YQLHTYRT-PHPASNLSLSQK  345 (545)
T ss_pred             eEEecCCCCcchHHHHH-hcCCCcceEEECCCCcEEeecccccceeEeeeccc------cccceeec-CCCccccccccc
Confidence            99999999999988887 49999999999999999999999999999999988      33444333 346678889887


Q ss_pred             EEEEEeCCCcEEEEeC
Q 009993          376 WLVSAAGDGKLSLIDV  391 (520)
Q Consensus       376 ~l~s~s~dg~i~vwd~  391 (520)
                      -+++.+....|.||.=
T Consensus       346 glLA~~~G~~v~iw~d  361 (545)
T KOG1272|consen  346 GLLALSYGDHVQIWKD  361 (545)
T ss_pred             cceeeecCCeeeeehh
Confidence            7777777778999953

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=4e-13  Score=132.69  Aligned_cols=217  Identities=16%  Similarity=0.130  Sum_probs=152.1

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCC---CeEEEEECCCCcE--EEEeCCCCceEEEEecCCCEEEEEe-CCCcEEE
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYD---SIVRMWHLEDGFS--IASSKPLGCTIRAVAADKKLLVAGG-TDGFIHC  208 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~d---g~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~l~sg~-~dg~i~v  208 (520)
                      .+.+..|...|...+|+|||+.|+.++.+   ..|++||+.+++.  +..+.++.. ..+++|+|+.|+.++ .+|.+.+
T Consensus       196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~~~I  274 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGVLNI  274 (429)
T ss_pred             ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCcEEE
Confidence            45677888899999999999999987754   4699999988753  444555544 357889999888764 6887766


Q ss_pred             EE--cccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEe-cCCeEEEEECCCC-cEEEEeeeccCEEEE
Q 009993          209 WR--AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRALL-KCLKVLRHSDWVYGL  282 (520)
Q Consensus       209 wd--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~v~iwd~~~~-~~~~~~~~~~~v~~~  282 (520)
                      |.  +.++              ....+..+...+....|  +++.|+.++ .+|...+|++... .....+.+......+
T Consensus       275 y~~d~~~~--------------~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~  340 (429)
T PRK01742        275 YVMGANGG--------------TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQI  340 (429)
T ss_pred             EEEECCCC--------------CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccC
Confidence            64  4333              23344556667778888  777766554 5788888876432 222223332222345


Q ss_pred             eeCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcc--cCccccceeeeeee
Q 009993          283 APHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEII--NDCTEANVLLVATW  360 (520)
Q Consensus       283 ~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~--~~~~~~~~~~~~~~  360 (520)
                      +|+++.++..+...+.+||+.+++...... .+  ....+.|+|+|++|+.++.++.+.+|++.  ++      .....+
T Consensus       341 SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~-~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G------~~~~~l  411 (429)
T PRK01742        341 SADGKTLVMINGDNVVKQDLTSGSTEVLSS-TF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG------RFKARL  411 (429)
T ss_pred             CCCCCEEEEEcCCCEEEEECCCCCeEEecC-CC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCC------CceEEc
Confidence            699999988885567779999887543322 22  23567899999999999999988888864  34      456677


Q ss_pred             cCCcCCEEEEEecCC
Q 009993          361 IPHTGPVNSLAFEFP  375 (520)
Q Consensus       361 ~~h~~~v~~l~~~~~  375 (520)
                      ..|.+.+...+|+|.
T Consensus       412 ~~~~g~~~~p~wsp~  426 (429)
T PRK01742        412 PGSDGQVKFPAWSPY  426 (429)
T ss_pred             cCCCCCCCCcccCCC
Confidence            788888888999873

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.56  E-value=2.1e-13  Score=136.53  Aligned_cols=267  Identities=13%  Similarity=0.133  Sum_probs=180.1

Q ss_pred             cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC-CCceEEE----EecCCCEEEEEeCCCcEEEEEcccCcc
Q 009993          142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP-LGCTIRA----VAADKKLLVAGGTDGFIHCWRAVEVLP  216 (520)
Q Consensus       142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-~~~~v~~----~~~~~~~l~sg~~dg~i~vwd~~~~~~  216 (520)
                      -+++++.++-.  ++|++|+ .-.|.++|+.++..+..+.. +...+..    +.-.+.+++++..-+.+..=+....  
T Consensus         7 ~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~--   81 (967)
T KOG0974|consen    7 LGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEASNQ--   81 (967)
T ss_pred             cccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchhhh--
Confidence            34555555543  6677665 45699999998876554421 1111111    1123456666666555543322111  


Q ss_pred             eeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEE-------EeeCCCEE
Q 009993          217 HLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYG-------LAPHDTTV  289 (520)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~-------~~~~~~~l  289 (520)
                                  ....+..+... ..+.++...++.++.+..+.+||...+.....+.+.....-       .+++.-++
T Consensus        82 ------------~~~~~s~wi~g-~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i  148 (967)
T KOG0974|consen   82 ------------IIERFSDWIFG-AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYI  148 (967)
T ss_pred             ------------hhhhccccccc-cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEE
Confidence                        11111122211 33444778888899999999999988877777665443332       22667788


Q ss_pred             EEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEE
Q 009993          290 ASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN  368 (520)
Q Consensus       290 ~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~  368 (520)
                      ++|+ -+.|.+|+.........+. +|.+.|.++.++.+|.++++.++|.++++|++.+.+.     ...+..+|+..|.
T Consensus       149 ~~gsv~~~iivW~~~~dn~p~~l~-GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~-----~~~~~fgHsaRvw  222 (967)
T KOG0974|consen  149 ASGSVFGEIIVWKPHEDNKPIRLK-GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV-----LGCTGFGHSARVW  222 (967)
T ss_pred             EeccccccEEEEeccccCCcceec-ccCCceEEEEEccCCcEEEEEecCcceeeeecccccc-----cCcccccccceeE
Confidence            8888 7999999998443333344 7999999999999999999999999999999999842     2246679999999


Q ss_pred             EEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcc-eeeEEEEecC--CEEEEecCCCeE
Q 009993          369 SLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE-CNLLSVDIGA--DRIVCGGEEGIV  445 (520)
Q Consensus       369 ~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~--~~l~sg~~Dg~v  445 (520)
                      .+.|.|+.+++++.|.+.++|+.....                   . ..+.+|. ..+..+....  -.++|++.||.+
T Consensus       223 ~~~~~~n~i~t~gedctcrvW~~~~~~-------------------l-~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~l  282 (967)
T KOG0974|consen  223 ACCFLPNRIITVGEDCTCRVWGVNGTQ-------------------L-EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTL  282 (967)
T ss_pred             EEEeccceeEEeccceEEEEEecccce-------------------e-hhhhhhhhcceeEEEEcCCceEEEeeccCcch
Confidence            999999999999999999999765421                   1 1233333 2344444433  399999999999


Q ss_pred             EEEeCCc
Q 009993          446 RIWNFSQ  452 (520)
Q Consensus       446 ~iwd~~~  452 (520)
                      ++|++..
T Consensus       283 k~~~l~~  289 (967)
T KOG0974|consen  283 KLWDLNG  289 (967)
T ss_pred             hhhhhhc
Confidence            9999864

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.56  E-value=1.1e-14  Score=132.93  Aligned_cols=224  Identities=16%  Similarity=0.225  Sum_probs=171.7

Q ss_pred             CceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEE
Q 009993          184 GCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVW  262 (520)
Q Consensus       184 ~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iw  262 (520)
                      +..-...+.+|..++.|+.-|.|..+|+.++..              ..-..-...|.++.| ....+++......++||
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L--------------~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvY  196 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL--------------HFEINVMETVRDVTFLHNEQFFAVAQKKYVYVY  196 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeeccccee--------------eeeeehhhhhhhhhhhcchHHHHhhhhceEEEe
Confidence            344456678999999999999999999988631              112234567888888 55555555666899999


Q ss_pred             ECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCe
Q 009993          263 DRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA  339 (520)
Q Consensus       263 d~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~  339 (520)
                      |- .|..++.+.....|..+.  |.--+|++++ .|.++.-|+.+|+.+..+.. ..+.+..|+-+|-...+-+|...|+
T Consensus       197 D~-~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t-~~G~~~vm~qNP~NaVih~GhsnGt  274 (545)
T KOG1272|consen  197 DN-NGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT-GAGRTDVMKQNPYNAVIHLGHSNGT  274 (545)
T ss_pred             cC-CCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc-cCCccchhhcCCccceEEEcCCCce
Confidence            95 466667676666677776  6777778888 79999999999999998874 6778889999999999999999999


Q ss_pred             EEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcc
Q 009993          340 IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQR  417 (520)
Q Consensus       340 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (520)
                      |.+|.....      .++..+..|.++|.+|++++  .+++|.+.|..++|||+++......                  
T Consensus       275 VSlWSP~sk------ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t------------------  330 (545)
T KOG1272|consen  275 VSLWSPNSK------EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHT------------------  330 (545)
T ss_pred             EEecCCCCc------chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccce------------------
Confidence            999999888      67778889999999999975  7999999999999999998632211                  


Q ss_pred             cccCcceeeEEEEecCCEEEEecCCCeEEEEe
Q 009993          418 MLHGFECNLLSVDIGADRIVCGGEEGIVRIWN  449 (520)
Q Consensus       418 ~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd  449 (520)
                      ....|  ....++++..-+++.|....|.||.
T Consensus       331 ~~tp~--~a~~ls~SqkglLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  331 YRTPH--PASNLSLSQKGLLALSYGDHVQIWK  360 (545)
T ss_pred             eecCC--CccccccccccceeeecCCeeeeeh
Confidence            11112  2334455566455555556799995

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.55  E-value=7.6e-13  Score=118.67  Aligned_cols=238  Identities=14%  Similarity=0.181  Sum_probs=175.0

Q ss_pred             cccccEEEEEEccCC--CEEEEEeCCCeEEEEECCCCcEEEE------eCCCCceEEEEecCCCEEEEEeCCCcEEEEEc
Q 009993          140 GHTEAVLTVFVLASA--KLLFTSGYDSIVRMWHLEDGFSIAS------SKPLGCTIRAVAADKKLLVAGGTDGFIHCWRA  211 (520)
Q Consensus       140 ~h~~~V~~l~~~~~~--~~l~sgs~dg~v~vwd~~~~~~~~~------~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~  211 (520)
                      .-...|+.++|.-++  +.+...+.|..+..+.++.......      ......+|..+...+..|++|-.+|.+.+|..
T Consensus        53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~  132 (412)
T KOG3881|consen   53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHD  132 (412)
T ss_pred             chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEec
Confidence            345677888887554  4666666777788887776654433      23455677777767778889999999999998


Q ss_pred             ccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecC--CeEEEEECCCCcEEEEee----------ec
Q 009993          212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWD--MTVRVWDRALLKCLKVLR----------HS  276 (520)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~----------~~  276 (520)
                      +.+..+         ......+..+ ..+..+.-   ++..+++|+..  ..+++||+++.+.+..-.          -+
T Consensus       133 k~~d~h---------ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVP  202 (412)
T KOG3881|consen  133 KSGDLH---------SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVP  202 (412)
T ss_pred             cCCccc---------cccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceee
Confidence            765321         1122222222 33434433   45677889988  889999999886555432          22


Q ss_pred             cCEEEEe--eC--CCEEEEEc-CCeEEEEECCCCe-eeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcc
Q 009993          277 DWVYGLA--PH--DTTVASTS-GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT  350 (520)
Q Consensus       277 ~~v~~~~--~~--~~~l~~~~-d~~i~iwd~~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~  350 (520)
                      -+++++.  +.  ...|++++ -+.+++||++.++ ++..+. -...+++++...|+++++++|..-|.+..||++.+  
T Consensus       203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd-~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~--  279 (412)
T KOG3881|consen  203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD-FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG--  279 (412)
T ss_pred             eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEec-cccCcceeeeecCCCcEEEEecccchhheecccCc--
Confidence            3444444  33  67788888 8999999999774 566665 35778999999999999999999999999999999  


Q ss_pred             ccceeeeee-ecCCcCCEEEEEecCC--EEEEEeCCCcEEEEeCCcc
Q 009993          351 EANVLLVAT-WIPHTGPVNSLAFEFP--WLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       351 ~~~~~~~~~-~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~~  394 (520)
                          ..... +.+-.+.|++|..+|.  +|+++|-|..|+|+|+.+.
T Consensus       280 ----kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  280 ----KLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             ----eeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence                44444 8889999999999985  9999999999999999984

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=7.4e-14  Score=130.04  Aligned_cols=228  Identities=20%  Similarity=0.287  Sum_probs=152.6

Q ss_pred             ceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--eccCEEEEe----eCCCEEEEEc-CCeEEE
Q 009993          229 TQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA----PHDTTVASTS-GSDVYI  299 (520)
Q Consensus       229 ~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~----~~~~~l~~~~-d~~i~i  299 (520)
                      ....+.||++.|+|+.|  +|.+|++||.|-.+.|||.-..+.+..+.  |...|.++.    .+++.+++|. |..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            44567899999999999  88999999999999999999888888886  889999987    4567788888 999999


Q ss_pred             EECCCC----------eeeEEeecccccceEEEEecCCC-CEEEEEeCCCeEEEEEcccCccccc----eeeeeeecCCc
Q 009993          300 WDTNSG----------CLLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEAN----VLLVATWIPHT  364 (520)
Q Consensus       300 wd~~~~----------~~~~~~~~~~~~~i~~l~~s~~~-~~l~tg~~dg~i~iwd~~~~~~~~~----~~~~~~~~~h~  364 (520)
                      ||+...          .....+. .|...|..++..|++ ..+.++++||+|+-||++....-..    ...+..+.+.-
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~-cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l  200 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL  200 (758)
T ss_pred             EecccccccccccCccchhhhhh-hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence            999852          2223333 588889999999988 7889999999999999988531100    00111111222


Q ss_pred             CCEEEEEecC---CEEEEEeCCCcEEEEeCCcccccCCCCCCCc--------eeeeeecCCCcccccC----cc--eeeE
Q 009993          365 GPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKR--------VSRVIEVEPPQRMLHG----FE--CNLL  427 (520)
Q Consensus       365 ~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~----~~--~~v~  427 (520)
                      -...|+..+|   .+|++|+.|-..++||.+...+.........        ..+....... ....+    ..  ..-.
T Consensus       201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl-kn~~gn~~~~~~~~t~v  279 (758)
T KOG1310|consen  201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL-KNSQGNLDRYITCCTYV  279 (758)
T ss_pred             heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc-cCcccccccceeeeEEE
Confidence            3456777765   6999999999999999765433321111000        0000000000 00111    00  1223


Q ss_pred             EEEecCC-EEEEecCCCeEEEEeCCchHhHHHH
Q 009993          428 SVDIGAD-RIVCGGEEGIVRIWNFSQAFEIERR  459 (520)
Q Consensus       428 ~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~~~~~  459 (520)
                      .+.|+|. +|++-+.+ .|+++|+..++.+...
T Consensus       280 tfnpNGtElLvs~~gE-hVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  280 TFNPNGTELLVSWGGE-HVYLFDVNEDKSPTPY  311 (758)
T ss_pred             EECCCCcEEEEeeCCe-EEEEEeecCCCCceee
Confidence            3444554 77776665 6999999887665443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=1e-13  Score=125.49  Aligned_cols=188  Identities=24%  Similarity=0.296  Sum_probs=139.3

Q ss_pred             eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEE
Q 009993          186 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWD  263 (520)
Q Consensus       186 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd  263 (520)
                      .+.++..+|..+++|+.||++++|++.+.             ........|.+.|.++.|  |+..|++-+.| ..+||+
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~-------------~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~  213 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM-------------LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWS  213 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcc-------------hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEE
Confidence            67788899999999999999999997543             244556689999999999  88899999999 899999


Q ss_pred             CCCCcEEEEee--eccCEEE---EeeCC---CEEEEEc---CCeEEEEECCCCee-----eEEeecccccceEEEEecCC
Q 009993          264 RALLKCLKVLR--HSDWVYG---LAPHD---TTVASTS---GSDVYIWDTNSGCL-----LTVVNGAHVGNTKSLARSHT  327 (520)
Q Consensus       264 ~~~~~~~~~~~--~~~~v~~---~~~~~---~~l~~~~---d~~i~iwd~~~~~~-----~~~~~~~~~~~i~~l~~s~~  327 (520)
                      .+++..+....  ..+...+   +..++   .+.+.+.   .+.|+.||+.....     .+... .....|++++.+++
T Consensus       214 ~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~d  292 (398)
T KOG0771|consen  214 VNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDD  292 (398)
T ss_pred             eccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCC
Confidence            99997766654  2222221   11222   2333322   36677766643221     11111 13447999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993          328 GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       328 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  393 (520)
                      |++++.|+.||.|.|++....+     .....-..|...|+.+.|.|  +++++.+.|....|..+.-
T Consensus       293 Gkf~AlGT~dGsVai~~~~~lq-----~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  293 GKFLALGTMDGSVAIYDAKSLQ-----RLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CcEEEEeccCCcEEEEEeceee-----eeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            9999999999999999998874     23344567999999999988  6889999998888887764

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.52  E-value=1.6e-11  Score=117.64  Aligned_cols=239  Identities=11%  Similarity=0.106  Sum_probs=146.9

Q ss_pred             cccEEEEEEccCCCEEEEEe-CCCeEEEEECC-CCcE--EEEeC-CCCceEEEEecCCCEEEEEeC-CCcEEEEEcccCc
Q 009993          142 TEAVLTVFVLASAKLLFTSG-YDSIVRMWHLE-DGFS--IASSK-PLGCTIRAVAADKKLLVAGGT-DGFIHCWRAVEVL  215 (520)
Q Consensus       142 ~~~V~~l~~~~~~~~l~sgs-~dg~v~vwd~~-~~~~--~~~~~-~~~~~v~~~~~~~~~l~sg~~-dg~i~vwd~~~~~  215 (520)
                      .+....++++|++++|++++ .++.|.+|++. ++..  +.... +....-.+++++++++++++. ++.|.+|++.+..
T Consensus        34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g  113 (330)
T PRK11028         34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG  113 (330)
T ss_pred             CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence            35567889999999887765 47889999996 3332  22222 112234566799998888765 7899999986421


Q ss_pred             ceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEE-EecCCeEEEEECCCCcEEE-------EeeeccCE--EEEe
Q 009993          216 PHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYS-GSWDMTVRVWDRALLKCLK-------VLRHSDWV--YGLA  283 (520)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s-~s~dg~v~iwd~~~~~~~~-------~~~~~~~v--~~~~  283 (520)
                      ..         ......+. +......+++  +++++++ ...++.|.+||+.+...+.       ........  ..+.
T Consensus       114 ~~---------~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~  183 (330)
T PRK11028        114 IP---------VAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFH  183 (330)
T ss_pred             CC---------CCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEEC
Confidence            10         01111121 2233455666  5667754 4456999999997643221       11111222  3445


Q ss_pred             eCCCEEEEEc--CCeEEEEECCC--Ce--eeEEeec--c---cccceEEEEecCCCCEEEEEeC-CCeEEEEEcccCccc
Q 009993          284 PHDTTVASTS--GSDVYIWDTNS--GC--LLTVVNG--A---HVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDCTE  351 (520)
Q Consensus       284 ~~~~~l~~~~--d~~i~iwd~~~--~~--~~~~~~~--~---~~~~i~~l~~s~~~~~l~tg~~-dg~i~iwd~~~~~~~  351 (520)
                      +++++++++.  ++.|.+||+..  ++  .+..+..  .   +......+.++|++++++++.. ++.|.+|++......
T Consensus       184 pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~  263 (330)
T PRK11028        184 PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV  263 (330)
T ss_pred             CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe
Confidence            8999988876  79999999973  32  2333321  0   1122346889999999998854 789999999654211


Q ss_pred             cceeeeeeecCCcCCEEEEEecC--CEEEEEeC-CCcEEEEeCCc
Q 009993          352 ANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG-DGKLSLIDVRK  393 (520)
Q Consensus       352 ~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~-dg~i~vwd~~~  393 (520)
                        ...+...... .....+.++|  ++|+++.. +++|.+|++..
T Consensus       264 --~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        264 --LSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             --EEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence              1122222111 2345677764  67777665 89999998853

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.51  E-value=4.2e-12  Score=113.98  Aligned_cols=206  Identities=14%  Similarity=0.093  Sum_probs=157.1

Q ss_pred             eccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCc----EEEEeeeccCEEEEe---eCCCEEEEEc-C--CeEEEEEC
Q 009993          233 LWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLK----CLKVLRHSDWVYGLA---PHDTTVASTS-G--SDVYIWDT  302 (520)
Q Consensus       233 ~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~v~~~~---~~~~~l~~~~-d--~~i~iwd~  302 (520)
                      .....++|..++.....|++|-.+|.+.+|....+.    .+..+.....+..+.   .+...+++|+ .  ..+.+||+
T Consensus       101 ~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdl  180 (412)
T KOG3881|consen  101 VSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDL  180 (412)
T ss_pred             cccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeec
Confidence            344567888888877888999999999999988543    333444455566665   4455666677 6  77999999


Q ss_pred             CCCeeeEEeeccc--------ccceEEEEecCC--CCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe
Q 009993          303 NSGCLLTVVNGAH--------VGNTKSLARSHT--GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF  372 (520)
Q Consensus       303 ~~~~~~~~~~~~~--------~~~i~~l~~s~~--~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~  372 (520)
                      +..+.+..-....        .-.++.+.|.+.  ...|++++.-+.+++||.+.+.     .++..+.--..+++++..
T Consensus       181 e~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-----RPV~~fd~~E~~is~~~l  255 (412)
T KOG3881|consen  181 EQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR-----RPVAQFDFLENPISSTGL  255 (412)
T ss_pred             ccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC-----cceeEeccccCcceeeee
Confidence            9986665543211        224678889887  7889999999999999999775     577777777788888888


Q ss_pred             cC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEEecCCCeEEEE
Q 009993          373 EF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIW  448 (520)
Q Consensus       373 ~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iw  448 (520)
                      .|  +++++|..-|.+..+|++.+..                  ....+.+.++++.++..++.  +++++|-|..|||+
T Consensus       256 ~p~gn~Iy~gn~~g~l~~FD~r~~kl------------------~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIh  317 (412)
T KOG3881|consen  256 TPSGNFIYTGNTKGQLAKFDLRGGKL------------------LGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIH  317 (412)
T ss_pred             cCCCcEEEEecccchhheecccCcee------------------eccccCCccCCcceEEEcCCCceEEeeccceeEEEe
Confidence            54  7999999999999999998632                  22335667777888887776  99999999999999


Q ss_pred             eCCchHhHHHHhh
Q 009993          449 NFSQAFEIERRAR  461 (520)
Q Consensus       449 d~~~~~~~~~~~~  461 (520)
                      |+.+...+.+...
T Consensus       318 D~ktrkll~kvYv  330 (412)
T KOG3881|consen  318 DIKTRKLLHKVYV  330 (412)
T ss_pred             ecccchhhhhhhh
Confidence            9999776665433

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=8.8e-13  Score=121.38  Aligned_cols=298  Identities=17%  Similarity=0.135  Sum_probs=197.3

Q ss_pred             EEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE----cCCEE
Q 009993          177 IASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRI  250 (520)
Q Consensus       177 ~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l  250 (520)
                      ...+.+|.+.|..+.  ..|..|++|+.|..|.+||+..+..            ...-..+|...|..-.|    +...+
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~------------~l~f~SGH~~NvfQaKFiP~s~d~ti  202 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP------------KLSFESGHCNNVFQAKFIPFSGDRTI  202 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCc------------ccccccccccchhhhhccCCCCCcCc
Confidence            345677887777666  7799999999999999999977632            22233478777777677    44679


Q ss_pred             EEEecCCeEEEEECC-CCcEEEEe---eeccCEEEEe--e-CCCEEEEEc-CCeEEEEECCCCeeeEEee--ccccc---
Q 009993          251 YSGSWDMTVRVWDRA-LLKCLKVL---RHSDWVYGLA--P-HDTTVASTS-GSDVYIWDTNSGCLLTVVN--GAHVG---  317 (520)
Q Consensus       251 ~s~s~dg~v~iwd~~-~~~~~~~~---~~~~~v~~~~--~-~~~~l~~~~-d~~i~iwd~~~~~~~~~~~--~~~~~---  317 (520)
                      ++++.||.|++=.+. ++.+..+.   +|.++|.-++  | ....|.+++ |+.+.-+|++.+.+...+.  ..+..   
T Consensus       203 ~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v  282 (559)
T KOG1334|consen  203 VTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERV  282 (559)
T ss_pred             eeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccce
Confidence            999999999998764 34333233   3888888777  4 455667766 9999999999875543332  12333   


Q ss_pred             ceEEEEecCCCC-EEEEEeCCCeEEEEEcccCccccceeeeeeecC------CcCCEEEEEec--CCEEEEEeCCCcEEE
Q 009993          318 NTKSLARSHTGD-FLFTGGEDGAIHMYEIINDCTEANVLLVATWIP------HTGPVNSLAFE--FPWLVSAAGDGKLSL  388 (520)
Q Consensus       318 ~i~~l~~s~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~------h~~~v~~l~~~--~~~l~s~s~dg~i~v  388 (520)
                      ..+.++..|... .+++|+.|..+++||.+.-........+..+..      ....|++++|+  +.-|.++-.|-.|++
T Consensus       283 ~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYL  362 (559)
T KOG1334|consen  283 GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYL  362 (559)
T ss_pred             eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEE
Confidence            567888888554 899999999999999876543322222233322      23468999996  455566666778999


Q ss_pred             EeCCcccccCCCCCCCceeeeeecCCCcccccCcce--eeEEEEec---CCEEEEecCCCeEEEEeCCchHhHHHHhhhh
Q 009993          389 IDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC--NLLSVDIG---ADRIVCGGEEGIVRIWNFSQAFEIERRARAL  463 (520)
Q Consensus       389 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~---~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~  463 (520)
                      +.-..+... .+.....     .-....+.+.||..  .|-.+.|-   ..++++|++-|.|.||+-.+++.+.-.    
T Consensus       363 F~~~~~~G~-~p~~~s~-----~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M----  432 (559)
T KOG1334|consen  363 FNKSMGDGS-EPDPSSP-----REQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM----  432 (559)
T ss_pred             eccccccCC-CCCCCcc-----hhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh----
Confidence            954432110 0000000     00111223566663  34445443   459999999999999999988776543    


Q ss_pred             cccccchhhhhccceeeeccCCCcccccccccccCCCCCCcceeeec
Q 009993          464 RGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHN  510 (520)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~~~~~~~~~~~~~~~~~  510 (520)
                      ++.      +.-+.+++-+|--..||++.++...        .||..
T Consensus       433 egD------r~VVNCLEpHP~~PvLAsSGid~DV--------KIWTP  465 (559)
T KOG1334|consen  433 EGD------RHVVNCLEPHPHLPVLASSGIDHDV--------KIWTP  465 (559)
T ss_pred             hcc------cceEeccCCCCCCchhhccCCccce--------eeecC
Confidence            221      1236788889999999998875433        78876

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=2.6e-12  Score=120.65  Aligned_cols=258  Identities=16%  Similarity=0.218  Sum_probs=175.2

Q ss_pred             EEEecCCCEE-EEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCC-CCeEEEEE---cCCEEEEEecCCeEEEE
Q 009993          188 RAVAADKKLL-VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE-GPITSLAL---DLTRIYSGSWDMTVRVW  262 (520)
Q Consensus       188 ~~~~~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~---~~~~l~s~s~dg~v~iw  262 (520)
                      ..+++||.++ ++|..--.|++||+..-               ...+..|. ..+..+..   |-..++.-..|.+|.+.
T Consensus        57 ik~s~DGqY~lAtG~YKP~ikvydlanL---------------SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefH  121 (703)
T KOG2321|consen   57 IKVSPDGQYLLATGTYKPQIKVYDLANL---------------SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFH  121 (703)
T ss_pred             eEecCCCcEEEEecccCCceEEEEcccc---------------eeeeeecccccceeEEEeccchhhheEeecCceeeeh
Confidence            4566999975 56777889999998542               23333342 34444443   22445666667777665


Q ss_pred             ECCCCcEEEEeeeccCEEEEe-eCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEE
Q 009993          263 DRALLKCLKVLRHSDWVYGLA-PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIH  341 (520)
Q Consensus       263 d~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~  341 (520)
                      ..-.......++..+.=.+.. +...++++|++..|+-++++.|+-+..+.. ..+.++++..++-..+|++|+.+|.|-
T Consensus       122 ak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~-~~~~lN~v~in~~hgLla~Gt~~g~VE  200 (703)
T KOG2321|consen  122 AKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET-DSGELNVVSINEEHGLLACGTEDGVVE  200 (703)
T ss_pred             hhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc-ccccceeeeecCccceEEecccCceEE
Confidence            432211111112222222333 677888888899999999999999888873 668999999999999999999999999


Q ss_pred             EEEcccCccccceeeeeeecCCcC-----CEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCC
Q 009993          342 MYEIINDCTEANVLLVATWIPHTG-----PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEP  414 (520)
Q Consensus       342 iwd~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  414 (520)
                      +||.+.......+........|.+     .|+++.|+.  -.+++|+.+|.|.|||+++.                  .+
T Consensus       201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~------------------~p  262 (703)
T KOG2321|consen  201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS------------------KP  262 (703)
T ss_pred             EecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC------------------Cc
Confidence            999998855444444444344444     499999954  58999999999999999985                  33


Q ss_pred             CcccccCcceeeEEEEecC----CEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccc
Q 009993          415 PQRMLHGFECNLLSVDIGA----DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQ  490 (520)
Q Consensus       415 ~~~~~~~~~~~v~~~~~~~----~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~  490 (520)
                      ....-++...++..+.|..    ..++|.. ...++|||-.+|.........           .....+++-|+++.+..
T Consensus       263 l~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt-----------~~lND~C~~p~sGm~f~  330 (703)
T KOG2321|consen  263 LLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPT-----------SDLNDFCFVPGSGMFFT  330 (703)
T ss_pred             eeecccCCccceeeecccccCCCceEEecc-hHHhhhcccccCCceeecccc-----------CCcCceeeecCCceEEE
Confidence            3344456666777777733    2666655 468999999988765443222           22467888888877655


Q ss_pred             c
Q 009993          491 C  491 (520)
Q Consensus       491 ~  491 (520)
                      +
T Consensus       331 A  331 (703)
T KOG2321|consen  331 A  331 (703)
T ss_pred             e
Confidence            3

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=1.4e-11  Score=115.81  Aligned_cols=276  Identities=13%  Similarity=0.109  Sum_probs=180.1

Q ss_pred             hhhhccccccEEEEEEccCCCEEE-EEeCCCeEEEEECCCCcEEEEeCCC-CceEEEE---ecCCCEEEEEeCCCcEEEE
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLF-TSGYDSIVRMWHLEDGFSIASSKPL-GCTIRAV---AADKKLLVAGGTDGFIHCW  209 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~-sgs~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~---~~~~~~l~sg~~dg~i~vw  209 (520)
                      ++.| +|...-+.+..+|||+|+. ||.+--.|++||+.+-...  +.-| ...++.+   +.|-..++.-..|.+|.+-
T Consensus        45 iQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefH  121 (703)
T KOG2321|consen   45 IQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFH  121 (703)
T ss_pred             HHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeeh
Confidence            4443 5777788999999999755 6777889999999765332  2222 2233333   3455555555666666543


Q ss_pred             EcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--e
Q 009993          210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--P  284 (520)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~  284 (520)
                      ... |.            -....+   ...-.+++++.  --|+.++....|+-++++.|+.+..+. ..+.++++.  +
T Consensus       122 ak~-G~------------hy~~RI---P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~  185 (703)
T KOG2321|consen  122 AKY-GR------------HYRTRI---PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE  185 (703)
T ss_pred             hhc-Ce------------eeeeec---CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC
Confidence            211 10            000000   11123344421  224455555679999999999998887 446666666  6


Q ss_pred             CCCEEEEEc-CCeEEEEECCCCeeeEEeec-----cccc-----ceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccc
Q 009993          285 HDTTVASTS-GSDVYIWDTNSGCLLTVVNG-----AHVG-----NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN  353 (520)
Q Consensus       285 ~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~-----~~~~-----~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~  353 (520)
                      ...+|++|+ +|.|-.||.+....+..+..     .|.+     .|+++.|+.+|-.+++|..+|.+.|||++...+   
T Consensus       186 ~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p---  262 (703)
T KOG2321|consen  186 EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP---  262 (703)
T ss_pred             ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc---
Confidence            777888888 99999999998877666542     1333     399999999999999999999999999999842   


Q ss_pred             eeeeeeecCCcCCEEEEEecC----CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEE
Q 009993          354 VLLVATWIPHTGPVNSLAFEF----PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSV  429 (520)
Q Consensus       354 ~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  429 (520)
                        .+..-.+..-+|..+.|.+    +.+++. ....++|||-.++....                  .+-..+...-.|+
T Consensus       263 --l~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~a------------------siEpt~~lND~C~  321 (703)
T KOG2321|consen  263 --LLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMA------------------SIEPTSDLNDFCF  321 (703)
T ss_pred             --eeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCcee------------------eccccCCcCceee
Confidence              2222223355888899943    344444 45679999988753221                  1112233455677


Q ss_pred             EecCCEEEEecCCCeEEEEeCCch
Q 009993          430 DIGADRIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       430 ~~~~~~l~sg~~Dg~v~iwd~~~~  453 (520)
                      -+++..+++|-+++.+..|=+..-
T Consensus       322 ~p~sGm~f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  322 VPGSGMFFTANESSKMHTYYIPSL  345 (703)
T ss_pred             ecCCceEEEecCCCcceeEEcccc
Confidence            777789999999998888876643

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.45  E-value=6.5e-11  Score=103.67  Aligned_cols=234  Identities=11%  Similarity=0.198  Sum_probs=158.4

Q ss_pred             EEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEE-EEecC------CeEE
Q 009993          188 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIY-SGSWD------MTVR  260 (520)
Q Consensus       188 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~-s~s~d------g~v~  260 (520)
                      .++..|..-+++|..+| .++|+.+--..           .....+..-.-.+.-+-|-.++++ .|+.+      ..|.
T Consensus        11 vs~NQD~ScFava~~~G-friyn~~P~ke-----------~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkvi   78 (346)
T KOG2111|consen   11 VSFNQDHSCFAVATDTG-FRIYNCDPFKE-----------SASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVI   78 (346)
T ss_pred             EEEccCCceEEEEecCc-eEEEecCchhh-----------hhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEE
Confidence            45556777777777666 78888643110           001111111123334444455544 34333      4799


Q ss_pred             EEECCCCcEEEEeeeccCEEEEeeCCCEEEEEcCCeEEEEECC-CCeeeEEeeccc-ccceEEEEecCCCCEEEE-EeCC
Q 009993          261 VWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTN-SGCLLTVVNGAH-VGNTKSLARSHTGDFLFT-GGED  337 (520)
Q Consensus       261 iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~iwd~~-~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~t-g~~d  337 (520)
                      |||-...+++.++....+|.++......+++.-.+.|+||... +.+.+..+.... .....+++-+.+..+||. |-.-
T Consensus        79 IWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~  158 (346)
T KOG2111|consen   79 IWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT  158 (346)
T ss_pred             EEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence            9998888899999999999999999999999999999999987 455666555322 233444443334445554 5567


Q ss_pred             CeEEEEEcccCccccceeeeeeecCCcCCEEEEEec--CCEEEEEeCCCc-EEEEeCCcccccCCCCCCCceeeeeecCC
Q 009993          338 GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGK-LSLIDVRKLLRSGRPTSGKRVSRVIEVEP  414 (520)
Q Consensus       338 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  414 (520)
                      |.|.|-|+......    ......+|.+.|.|++.+  +..+||+|..|+ |+|||..++........+.          
T Consensus       159 GqvQi~dL~~~~~~----~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~----------  224 (346)
T KOG2111|consen  159 GQVQIVDLASTKPN----APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV----------  224 (346)
T ss_pred             ceEEEEEhhhcCcC----CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC----------
Confidence            99999999877321    245677999999999995  579999999998 7999999874443222111          


Q ss_pred             CcccccCcceeeEEEEecCC--EEEEecCCCeEEEEeCCchH
Q 009993          415 PQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAF  454 (520)
Q Consensus       415 ~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~~  454 (520)
                             ....+.+++++++  +|+++|+-|+|+|+.+....
T Consensus       225 -------d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  225 -------DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             -------chheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence                   2234566666554  99999999999999998644

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.45  E-value=7.3e-11  Score=115.24  Aligned_cols=264  Identities=13%  Similarity=0.050  Sum_probs=169.9

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEE
Q 009993          153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR  232 (520)
Q Consensus       153 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  232 (520)
                      .+..+++++.+|.|..+|..+|+.+...............++..++.++.+|.+..+|..+|+.. +.            
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~-W~------------  130 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKEL-WR------------  130 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEe-ee------------
Confidence            36788899999999999999999887765443322233356788889999999999999887531 11            


Q ss_pred             eccCCCCeE-EEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEE-------EeeCCCEEEEEc-CCeEEEEECC
Q 009993          233 LWEHEGPIT-SLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYG-------LAPHDTTVASTS-GSDVYIWDTN  303 (520)
Q Consensus       233 ~~~h~~~v~-~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~-------~~~~~~~l~~~~-d~~i~iwd~~  303 (520)
                      .. ..+.+. .....++.++.++.++.+..||.++++.+...........       +..+ ..++.+. ++.+..+|++
T Consensus       131 ~~-~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~-~~v~~~~~~g~v~ald~~  208 (377)
T TIGR03300       131 AK-LSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIAD-GGVLVGFAGGKLVALDLQ  208 (377)
T ss_pred             ec-cCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEEC-CEEEEECCCCEEEEEEcc
Confidence            10 011121 1223567788888899999999999998877763322211       1133 4556666 7999999999


Q ss_pred             CCeeeEEeeccccc---c---eEEEEecC--CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCC
Q 009993          304 SGCLLTVVNGAHVG---N---TKSLARSH--TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP  375 (520)
Q Consensus       304 ~~~~~~~~~~~~~~---~---i~~l~~s~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  375 (520)
                      +|+.+.........   .   ...+.-+|  .+..+++++.+|.++.||..+++      .+.....  .........+.
T Consensus       209 tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~------~~W~~~~--~~~~~p~~~~~  280 (377)
T TIGR03300       209 TGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR------VLWKRDA--SSYQGPAVDDN  280 (377)
T ss_pred             CCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc------EEEeecc--CCccCceEeCC
Confidence            99877654321110   0   00111111  35678888899999999998883      3333221  12233445678


Q ss_pred             EEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHh
Q 009993          376 WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE  455 (520)
Q Consensus       376 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~  455 (520)
                      .++.++.||.|..+|..++.......            .    +.+.  ...+....++.|++++.||.|+++|..+++.
T Consensus       281 ~vyv~~~~G~l~~~d~~tG~~~W~~~------------~----~~~~--~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~  342 (377)
T TIGR03300       281 RLYVTDADGVVVALDRRSGSELWKND------------E----LKYR--QLTAPAVVGGYLVVGDFEGYLHWLSREDGSF  342 (377)
T ss_pred             EEEEECCCCeEEEEECCCCcEEEccc------------c----ccCC--ccccCEEECCEEEEEeCCCEEEEEECCCCCE
Confidence            88899999999999998763321110            0    0000  0111122467899999999999999988765


Q ss_pred             HH
Q 009993          456 IE  457 (520)
Q Consensus       456 ~~  457 (520)
                      +.
T Consensus       343 ~~  344 (377)
T TIGR03300       343 VA  344 (377)
T ss_pred             EE
Confidence            43

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.45  E-value=1.3e-12  Score=121.57  Aligned_cols=183  Identities=19%  Similarity=0.231  Sum_probs=137.7

Q ss_pred             HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR  210 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd  210 (520)
                      .+-+...+|.++|.|-.|+|||.-|+|++.||.|++|.- +|-...++.....+|.|..  |+.+.++-+.. +.+.+=.
T Consensus        95 rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKp  172 (737)
T KOG1524|consen   95 RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKP  172 (737)
T ss_pred             hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEee
Confidence            446677899999999999999999999999999999994 4544444445556676665  77665554433 3444433


Q ss_pred             cccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCC
Q 009993          211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHD  286 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~  286 (520)
                      +             ...........|.+-|.++.|  ..+.+++|+.|-..++||.........-.|..+|++++  |+ 
T Consensus       173 L-------------~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-  238 (737)
T KOG1524|consen  173 L-------------AANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-  238 (737)
T ss_pred             c-------------ccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-
Confidence            2             223466778899999999999  45889999999999999986444444444999999999  55 


Q ss_pred             CEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993          287 TTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY  343 (520)
Q Consensus       287 ~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iw  343 (520)
                      ..++.++-++++            +.....+.|..++|++||..+++|+..|.+.+=
T Consensus       239 ~~~~v~S~nt~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  239 KDYLLWSYNTAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             cceeeeeeeeee------------ecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence            666666656555            333567889999999999999999999987553

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.44  E-value=3.7e-11  Score=105.21  Aligned_cols=198  Identities=17%  Similarity=0.173  Sum_probs=151.4

Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEEC
Q 009993          187 IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDR  264 (520)
Q Consensus       187 v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~  264 (520)
                      ..++..+...++.+.....|.||.....          .......++..|...|+.++|  ..+.|++|+.|..-++|..
T Consensus        15 chAwn~drt~iAv~~~~~evhiy~~~~~----------~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen   15 CHAWNSDRTQIAVSPNNHEVHIYSMLGA----------DLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             eeeecCCCceEEeccCCceEEEEEecCC----------CCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence            3455589999999999999999987554          235577888999999999999  5578999999999999998


Q ss_pred             C-CCcE---EEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeee---EEeecccccceEEEEecCCCCEEEEE
Q 009993          265 A-LLKC---LKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLL---TVVNGAHVGNTKSLARSHTGDFLFTG  334 (520)
Q Consensus       265 ~-~~~~---~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~---~~~~~~~~~~i~~l~~s~~~~~l~tg  334 (520)
                      . .++-   +..+++....+++.  |.++.+++|+ ...|.||-.+....-   +.+...+.+.|+++.|+|++-++++|
T Consensus        85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG  164 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG  164 (361)
T ss_pred             CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence            4 3332   22335888888887  9999999999 677888877654332   11223577889999999999999999


Q ss_pred             eCCCeEEEEEcccCccccc------------eeeeeeecCCcCCEEEEEec--CCEEEEEeCCCcEEEEeCCcc
Q 009993          335 GEDGAIHMYEIINDCTEAN------------VLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       335 ~~dg~i~iwd~~~~~~~~~------------~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~  394 (520)
                      +.|+..++|..--......            ...+..+....+.|..+.|+  +..|+-.+.|+.+.+=|...+
T Consensus       165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence            9999999997532111000            01233344566789999997  589999999999999998765

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.41  E-value=5.2e-10  Score=107.05  Aligned_cols=294  Identities=13%  Similarity=0.097  Sum_probs=171.8

Q ss_pred             CEE-EEEeCCCeEEEEECCCCcEEEEeCCCCce--EEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceE
Q 009993          155 KLL-FTSGYDSIVRMWHLEDGFSIASSKPLGCT--IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF  231 (520)
Q Consensus       155 ~~l-~sgs~dg~v~vwd~~~~~~~~~~~~~~~~--v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  231 (520)
                      +++ ++-..++.|.|.|..+.+.+..+......  ...+++|++++++++.||.|.++|+.+.+             ...
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~-------------~v~   72 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK-------------VVA   72 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS-------------EEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc-------------EEE
Confidence            344 45567899999999999999998754332  24566999999999999999999998763             333


Q ss_pred             EeccCCCCeEEEEE--cCCEEEEEe-cCCeEEEEECCCCcEEEEeee--------ccCEEEEe--eCCCEEEEEc-C-Ce
Q 009993          232 RLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRALLKCLKVLRH--------SDWVYGLA--PHDTTVASTS-G-SD  296 (520)
Q Consensus       232 ~~~~h~~~v~~l~~--~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~--------~~~v~~~~--~~~~~l~~~~-d-~~  296 (520)
                      ++.. .....++++  ||++++++. .++.+.++|.++.+.++.+..        ...+.++.  +....++..- + +.
T Consensus        73 ~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~  151 (369)
T PF02239_consen   73 TIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGE  151 (369)
T ss_dssp             EEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTE
T ss_pred             EEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCe
Confidence            3332 334556777  889887665 689999999999999998862        23556664  5556455444 4 88


Q ss_pred             EEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEE-eCCCeEEEEEcccCccccceeeeeee----cCCcCCEEEEE
Q 009993          297 VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDCTEANVLLVATW----IPHTGPVNSLA  371 (520)
Q Consensus       297 i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~~----~~h~~~v~~l~  371 (520)
                      |.+.|......+..-............|+|++++++++ ..+..|-++|..+..      .+..+    ..|..++..+-
T Consensus       152 I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k------~v~~i~~g~~p~~~~~~~~p  225 (369)
T PF02239_consen  152 IWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK------LVALIDTGKKPHPGPGANFP  225 (369)
T ss_dssp             EEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE------EEEEEE-SSSBEETTEEEEE
T ss_pred             EEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccce------EEEEeecccccccccccccc
Confidence            99999877654432221244567788999999987664 557789999988873      22222    23444444332


Q ss_pred             -----------ecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCccee-eEEEEecCCEEEEe
Q 009993          372 -----------FEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN-LLSVDIGADRIVCG  439 (520)
Q Consensus       372 -----------~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~l~sg  439 (520)
                                 -.....++.-....+.+||..+...                   .+.+...... -...+|++.++.+.
T Consensus       226 hp~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv-------------------v~~I~~~G~glFi~thP~s~~vwvd  286 (369)
T PF02239_consen  226 HPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV-------------------VKTIPTQGGGLFIKTHPDSRYVWVD  286 (369)
T ss_dssp             ETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSE-------------------EEEEE-SSSS--EE--TT-SEEEEE
T ss_pred             CCCcceEEeeccccceecccccCCccccchhhcCeE-------------------EEEEECCCCcceeecCCCCccEEee
Confidence                       1122222222223445566555311                   1111211222 22446677777776


Q ss_pred             ----cCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccccccc
Q 009993          440 ----GEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAK  496 (520)
Q Consensus       440 ----~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~~~  496 (520)
                          ...+.|.++|.++.+.+....         ....++...++|++||+.+-.+..+..
T Consensus       287 ~~~~~~~~~v~viD~~tl~~~~~i~---------~~~~~~~~h~ef~~dG~~v~vS~~~~~  338 (369)
T PF02239_consen  287 TFLNPDADTVQVIDKKTLKVVKTIT---------PGPGKRVVHMEFNPDGKEVWVSVWDGN  338 (369)
T ss_dssp             -TT-SSHT-EEEEECCGTEEEE-HH---------HHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred             ccCCCCCceEEEEECcCcceeEEEe---------ccCCCcEeccEECCCCCEEEEEEecCC
Confidence                556899999999874433322         111223678999999998887766544

...

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=3.1e-10  Score=101.07  Aligned_cols=245  Identities=19%  Similarity=0.244  Sum_probs=154.8

Q ss_pred             ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC-CCCceEEEEe--cC-CCEEEEEeCCCcEEEEEcccCccee
Q 009993          143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRAVA--AD-KKLLVAGGTDGFIHCWRAVEVLPHL  218 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~--~~-~~~l~sg~~dg~i~vwd~~~~~~~~  218 (520)
                      -.+..++|++.-.-++++..|-.|++||-.. .+...++ .....|.++.  |. +..|+.|+..| |.+|.........
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence            4577889988766788999999999999766 3333333 2334455555  54 45677777654 8899864322111


Q ss_pred             eec-cCCccccceEEeccCCCCeEEEEE--cCCEEEEEec-CCeEEEEECCCCcEEEEee-eccCE--EEEeeCCCEEEE
Q 009993          219 FDI-SGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDRALLKCLKVLR-HSDWV--YGLAPHDTTVAS  291 (520)
Q Consensus       219 ~~~-~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~-~~~~v--~~~~~~~~~l~~  291 (520)
                      ... ..+.....+....+| .+|++|.|  |+..+++++. |..|.|||..++..+.... ..+.+  .-.+|++.++++
T Consensus       177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa  255 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA  255 (445)
T ss_pred             cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence            100 112223345555667 78999999  7788888875 5689999999998877664 33344  344599999999


Q ss_pred             Ec-CCeEEEEECCCC-eeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccc---------ceeeeeee
Q 009993          292 TS-GSDVYIWDTNSG-CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA---------NVLLVATW  360 (520)
Q Consensus       292 ~~-d~~i~iwd~~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~---------~~~~~~~~  360 (520)
                      +. |+..++|+.... ...+-..  -.+.|...+|+|+|.+|+-... |.-++|.+.-.+...         ...++..+
T Consensus       256 At~davfrlw~e~q~wt~erw~l--gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL  332 (445)
T KOG2139|consen  256 ATCDAVFRLWQENQSWTKERWIL--GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADL  332 (445)
T ss_pred             ecccceeeeehhcccceecceec--cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccc
Confidence            99 999999965543 3332222  3458999999999997664432 233455543221110         11111111


Q ss_pred             c------C---CcCCEEEEEecC--CEEEEEeCCC--------cEEEEeCCc
Q 009993          361 I------P---HTGPVNSLAFEF--PWLVSAAGDG--------KLSLIDVRK  393 (520)
Q Consensus       361 ~------~---h~~~v~~l~~~~--~~l~s~s~dg--------~i~vwd~~~  393 (520)
                      .      +   -.+.+.+++|+|  .+|++.-..+        .|.+||.+.
T Consensus       333 ~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~  384 (445)
T KOG2139|consen  333 QEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK  384 (445)
T ss_pred             hhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence            1      1   146788999987  6888776543        366777665

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=1.5e-10  Score=114.15  Aligned_cols=215  Identities=12%  Similarity=0.014  Sum_probs=142.2

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeC---CCeEEEEECCCCcEE--EEeCCCCceEEEEecCCCEEEEE-eCCC--cE
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGY---DSIVRMWHLEDGFSI--ASSKPLGCTIRAVAADKKLLVAG-GTDG--FI  206 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~---dg~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~l~sg-~~dg--~i  206 (520)
                      .+.+..+...+.+.+|+|||+.|+..+.   +..|.+|++.+++..  ..+.++.. ...++|||+.|+.. +.+|  .|
T Consensus       191 ~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g~~~I  269 (429)
T PRK03629        191 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNL  269 (429)
T ss_pred             CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCCCcEE
Confidence            3445567778999999999998886543   457999999888543  33444433 35788999988764 4455  48


Q ss_pred             EEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecC-C--eEEEEECCCCcEEEEeeeccCE--
Q 009993          207 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD-M--TVRVWDRALLKCLKVLRHSDWV--  279 (520)
Q Consensus       207 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d-g--~v~iwd~~~~~~~~~~~~~~~v--  279 (520)
                      .+||+.++.              ...+..+...+....|  +++.|+..+.+ +  .|.++|+.+++...........  
T Consensus       270 ~~~d~~tg~--------------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~  335 (429)
T PRK03629        270 YVMDLASGQ--------------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQD  335 (429)
T ss_pred             EEEECCCCC--------------EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccC
Confidence            888987653              2233334445667788  77878766654 4  4555577766543332222222  


Q ss_pred             EEEeeCCCEEEEEc-C---CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCe---EEEEEcccCcccc
Q 009993          280 YGLAPHDTTVASTS-G---SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA---IHMYEIINDCTEA  352 (520)
Q Consensus       280 ~~~~~~~~~l~~~~-d---~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~---i~iwd~~~~~~~~  352 (520)
                      ..++|+|+.++... +   ..|.+||+.++... .+...  .......|+|||+.|+.++.++.   +.++++...    
T Consensus       336 ~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~----  408 (429)
T PRK03629        336 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR----  408 (429)
T ss_pred             EEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC----
Confidence            44569999887765 3   35889999888643 33222  22346789999999998888764   666776443    


Q ss_pred             ceeeeeeecCCcCCEEEEEecC
Q 009993          353 NVLLVATWIPHTGPVNSLAFEF  374 (520)
Q Consensus       353 ~~~~~~~~~~h~~~v~~l~~~~  374 (520)
                         ....+.+|.+.+...+|+|
T Consensus       409 ---~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        409 ---FKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             ---CeEECccCCCCcCCcccCC
Confidence               3455667888888888876

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=5.8e-11  Score=117.43  Aligned_cols=202  Identities=11%  Similarity=0.006  Sum_probs=127.4

Q ss_pred             CCeEEEEECCCCcEEEEeCCCCceEE--EEecCCCEEEEEeCC---CcEEEEEcccCcceeeeccCCccccceEEeccCC
Q 009993          163 DSIVRMWHLEDGFSIASSKPLGCTIR--AVAADKKLLVAGGTD---GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE  237 (520)
Q Consensus       163 dg~v~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~  237 (520)
                      +..|.+||..... ...+..+...+.  .++|+|+.|+..+.+   ..|++||+.++...           ....+.+|.
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-----------~l~~~~g~~  250 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-----------VVASFRGHN  250 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-----------EEecCCCcc
Confidence            5789999986554 445555555454  566999999887754   36999999776321           122233333


Q ss_pred             CCeEEEEE--cCCEEEEEe-cCCeEEEE--ECCCCcEEEEeeeccCEE--EEeeCCCEEEEEc--CCeEEEEECCCC-ee
Q 009993          238 GPITSLAL--DLTRIYSGS-WDMTVRVW--DRALLKCLKVLRHSDWVY--GLAPHDTTVASTS--GSDVYIWDTNSG-CL  307 (520)
Q Consensus       238 ~~v~~l~~--~~~~l~s~s-~dg~v~iw--d~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~--d~~i~iwd~~~~-~~  307 (520)
                         ..++|  |++.|+.++ .+|.+.+|  |+.+++......+...+.  .++|+++.++.++  ++...||++... ..
T Consensus       251 ---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~  327 (429)
T PRK01742        251 ---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG  327 (429)
T ss_pred             ---CceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence               34677  777777664 67765555  666666544333443343  3458999777655  577788876432 22


Q ss_pred             eEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCc
Q 009993          308 LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGK  385 (520)
Q Consensus       308 ~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~  385 (520)
                      ...+  .+.+  ....|+|+|+.|+.++.++ +.+||+.++.      .......+  ....+.|+|  .+|+.++.++.
T Consensus       328 ~~~l--~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~------~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~  394 (429)
T PRK01742        328 ASLV--GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGS------TEVLSSTF--LDESPSISPNGIMIIYSSTQGL  394 (429)
T ss_pred             eEEe--cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCC------eEEecCCC--CCCCceECCCCCEEEEEEcCCC
Confidence            2222  2333  4578999999998887765 5569998773      21111111  224566765  68999999999


Q ss_pred             EEEEeCC
Q 009993          386 LSLIDVR  392 (520)
Q Consensus       386 i~vwd~~  392 (520)
                      +.+|++.
T Consensus       395 ~~~l~~~  401 (429)
T PRK01742        395 GKVLQLV  401 (429)
T ss_pred             ceEEEEE
Confidence            9888864

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.35  E-value=9.4e-10  Score=107.44  Aligned_cols=258  Identities=15%  Similarity=0.038  Sum_probs=157.8

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEE
Q 009993          153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR  232 (520)
Q Consensus       153 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  232 (520)
                      ++..++.++.|+.+..+|..+|+.+................+..++.++.+|.+..||..++... +......   ....
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~-W~~~~~~---~~~~  179 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERL-WTYSRVT---PALT  179 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCcee-eEEccCC---Ccee
Confidence            46778888999999999999999887665332211111124567788888999999999887521 1111000   0000


Q ss_pred             eccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeeccC-----------E-EEEeeCCCEEEEEc-CCeEEE
Q 009993          233 LWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDW-----------V-YGLAPHDTTVASTS-GSDVYI  299 (520)
Q Consensus       233 ~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-----------v-~~~~~~~~~l~~~~-d~~i~i  299 (520)
                      .....    +....++.++.+..++.+..+|.++++.+........           + .+....+..+++++ ++.++.
T Consensus       180 ~~~~~----sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a  255 (377)
T TIGR03300       180 LRGSA----SPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAA  255 (377)
T ss_pred             ecCCC----CCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEE
Confidence            10111    1123346788888899999999999987765431100           0 01112344555555 999999


Q ss_pred             EECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecC-CcCCEEEEEecCCEEE
Q 009993          300 WDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP-HTGPVNSLAFEFPWLV  378 (520)
Q Consensus       300 wd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~l~  378 (520)
                      +|..+|+.+.....  .. .....  ..+..+++++.||.++.+|..++.      .+..... ......+....+..|+
T Consensus       256 ~d~~tG~~~W~~~~--~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~------~~W~~~~~~~~~~ssp~i~g~~l~  324 (377)
T TIGR03300       256 LDLRSGRVLWKRDA--SS-YQGPA--VDDNRLYVTDADGVVVALDRRSGS------ELWKNDELKYRQLTAPAVVGGYLV  324 (377)
T ss_pred             EECCCCcEEEeecc--CC-ccCce--EeCCEEEEECCCCeEEEEECCCCc------EEEccccccCCccccCEEECCEEE
Confidence            99999988776542  11 11222  246788888899999999998883      3332211 1112233334568999


Q ss_pred             EEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcce-eeEEEEecCCEEEEecCCCeEEEE
Q 009993          379 SAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC-NLLSVDIGADRIVCGGEEGIVRIW  448 (520)
Q Consensus       379 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~l~sg~~Dg~v~iw  448 (520)
                      +++.+|.|.++|..++....+.                   ..+.. ........++.|+.++.||.|+.|
T Consensus       325 ~~~~~G~l~~~d~~tG~~~~~~-------------------~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       325 VGDFEGYLHWLSREDGSFVARL-------------------KTDGSGIASPPVVVGDGLLVQTRDGDLYAF  376 (377)
T ss_pred             EEeCCCEEEEEECCCCCEEEEE-------------------EcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence            9999999999998875332211                   11110 111112335678899999998875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.34  E-value=9e-10  Score=105.43  Aligned_cols=286  Identities=13%  Similarity=0.113  Sum_probs=161.7

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC-CCceEEEEecCCCEEEEEe-CCCcEEEEEcc
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP-LGCTIRAVAADKKLLVAGG-TDGFIHCWRAV  212 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sg~-~dg~i~vwd~~  212 (520)
                      +..+......-..+.|+|||+++++++.||.|.++|+.+++.+++++. ....-.+++++|++++++. .++.+.++|.+
T Consensus        29 ~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~  108 (369)
T PF02239_consen   29 VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAE  108 (369)
T ss_dssp             EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETT
T ss_pred             EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccc
Confidence            444544433334577999999999999999999999999999988864 3444567779999988776 57999999987


Q ss_pred             cCcceeeeccCCccccceEEecc-------CCCCeEEEEE--cCC-EEEEEecCCeEEEEECCCCcEE--EEeeeccCEE
Q 009993          213 EVLPHLFDISGSEKQNTQFRLWE-------HEGPITSLAL--DLT-RIYSGSWDMTVRVWDRALLKCL--KVLRHSDWVY  280 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~--~~~-~l~s~s~dg~v~iwd~~~~~~~--~~~~~~~~v~  280 (520)
                      +.+.             ...+..       ....+..+..  ... ++++.-.-+.|.+.|....+.+  ..+.......
T Consensus       109 tle~-------------v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~  175 (369)
T PF02239_consen  109 TLEP-------------VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPH  175 (369)
T ss_dssp             T--E-------------EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEE
T ss_pred             cccc-------------eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccccccc
Confidence            7542             222211       2345666655  334 4444445588888887765433  2333333333


Q ss_pred             --EEeeCCCEEEEEc--CCeEEEEECCCCeeeEEeec---ccccceEEEEecCCCCEEE-EEe---------CCCeEEEE
Q 009993          281 --GLAPHDTTVASTS--GSDVYIWDTNSGCLLTVVNG---AHVGNTKSLARSHTGDFLF-TGG---------EDGAIHMY  343 (520)
Q Consensus       281 --~~~~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~~---~~~~~i~~l~~s~~~~~l~-tg~---------~dg~i~iw  343 (520)
                        .+.+++++++++.  ++.|-++|.++++.+..+..   .|..+...+ .+|....+. +++         ....+.+|
T Consensus       176 D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~  254 (369)
T PF02239_consen  176 DGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVH  254 (369)
T ss_dssp             EEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-S
T ss_pred             ccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccc
Confidence              3448899887765  68999999999988776643   355555444 234332222 221         11233345


Q ss_pred             EcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEE----eCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcc
Q 009993          344 EIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSA----AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQR  417 (520)
Q Consensus       344 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~----s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (520)
                      |....      +.+.++....++ .-+..+|  +++.+.    ...++|.++|..+......                ..
T Consensus       255 d~~~w------kvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~----------------i~  311 (369)
T PF02239_consen  255 DDYAW------KVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKT----------------IT  311 (369)
T ss_dssp             TTTBT------SEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-----------------HH
T ss_pred             hhhcC------eEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEE----------------Ee
Confidence            55554      667777766656 5666666  577776    4458999999998521110                00


Q ss_pred             cccCcceeeEEEEecCC--EEEEecCCCeEEEEeCCchHhHH
Q 009993          418 MLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIE  457 (520)
Q Consensus       418 ~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~~~~~  457 (520)
                      ...+....-..+..+|+  ++..-..+|.|.+||..+.+++.
T Consensus       312 ~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~  353 (369)
T PF02239_consen  312 PGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK  353 (369)
T ss_dssp             HHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred             ccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence            01111122334445555  44444445589999999876543

...

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.33  E-value=3.5e-10  Score=100.15  Aligned_cols=291  Identities=12%  Similarity=0.147  Sum_probs=165.5

Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc-----EEEEeCCCCc------------eEEEE---e-cCCCEEEE
Q 009993          141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF-----SIASSKPLGC------------TIRAV---A-ADKKLLVA  199 (520)
Q Consensus       141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~-----~~~~~~~~~~------------~v~~~---~-~~~~~l~s  199 (520)
                      -.+-|.++.|...|.+|+||..+|.|.++.-+...     ....++.|..            .|..+   . .+...++.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            34678999999999999999999999999754322     2233444432            12222   2 34456778


Q ss_pred             EeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee--ecc
Q 009993          200 GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSD  277 (520)
Q Consensus       200 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~  277 (520)
                      .+.|.+|++|.+.......        ........+..+.|+++..    .+.+..|-.+.      ..+.+.+.  |.-
T Consensus       104 stNdktiKlWKi~er~~k~--------~~~~~~~~~~~~~~~~lr~----p~~~~~~~~ve------a~prRv~aNaHty  165 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKK--------EGYNLPEEGPPGTITSLRL----PVEGRHDLEVE------ASPRRVYANAHTY  165 (433)
T ss_pred             ecCCcceeeeeeecccccc--------ccccccccCCCCccceeec----eeeccccceee------eeeeeecccccee
Confidence            8899999999986643211        0000011112233333332    11111111110      11223333  777


Q ss_pred             CEEEEe--eCCCEEEEEcCCeEEEEECCCCee---eEEeec----ccccceEEEEecCCC-CEEEEEeCCCeEEEEEccc
Q 009993          278 WVYGLA--PHDTTVASTSGSDVYIWDTNSGCL---LTVVNG----AHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIIN  347 (520)
Q Consensus       278 ~v~~~~--~~~~~l~~~~d~~i~iwd~~~~~~---~~~~~~----~~~~~i~~l~~s~~~-~~l~tg~~dg~i~iwd~~~  347 (520)
                      .|++++  .|...++++.|=.|.+|+++--..   +..++.    .-..-|++..|+|.. +.++-.+..|+|++-|++.
T Consensus       166 hiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~  245 (433)
T KOG1354|consen  166 HINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ  245 (433)
T ss_pred             EeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence            788888  778889998899999999874322   222221    113457888999954 6777788999999999985


Q ss_pred             Cccc----------cceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCce--eeeeecC
Q 009993          348 DCTE----------ANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRV--SRVIEVE  413 (520)
Q Consensus       348 ~~~~----------~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~  413 (520)
                      ...-          ..+....-+..--..|..+.|+.  +++++-.. -+|++||+.....+.....-...  ..+-.+.
T Consensus       246 ~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lY  324 (433)
T KOG1354|consen  246 SALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLY  324 (433)
T ss_pred             hhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHh
Confidence            4210          01111111222335688899954  67766543 58999999764322111000000  0000000


Q ss_pred             CCcccccCcceeeEEEEecCC--EEEEecCCCeEEEEeCCchHh
Q 009993          414 PPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFE  455 (520)
Q Consensus       414 ~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~~~  455 (520)
                      ....+     ..-+.++++|+  +++||+....+++++...|..
T Consensus       325 EnD~I-----fdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk  363 (433)
T KOG1354|consen  325 ENDAI-----FDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK  363 (433)
T ss_pred             hccch-----hheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence            00001     11234556665  999999999999999766544

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.32  E-value=3.6e-10  Score=113.88  Aligned_cols=192  Identities=19%  Similarity=0.229  Sum_probs=150.1

Q ss_pred             ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCce------EEEEecCCCEEEEEeCCCcEEEEEcccCcc
Q 009993          143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT------IRAVAADKKLLVAGGTDGFIHCWRAVEVLP  216 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~------v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~  216 (520)
                      +.|....+.-+...++.+..+..+.+||...+............      +...+++.-++++|+.-+.|.+|+....  
T Consensus        88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d--  165 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED--  165 (967)
T ss_pred             ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc--
Confidence            33444555567788999999999999999877666555433221      1222367779999999999999997632  


Q ss_pred             eeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEE--EeeeccCEEEEeeCCCEEEEE
Q 009993          217 HLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLK--VLRHSDWVYGLAPHDTTVAST  292 (520)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~  292 (520)
                                 .....+.+|.+.|.++.+  ||.++++.|.|.++++|++++.+...  .+.|+..|..+...++.++++
T Consensus       166 -----------n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~  234 (967)
T KOG0974|consen  166 -----------NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITV  234 (967)
T ss_pred             -----------CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEe
Confidence                       122268899999999999  99999999999999999999988766  355999999888655588888


Q ss_pred             c-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993          293 S-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  348 (520)
Q Consensus       293 ~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~  348 (520)
                      + |-+.++|+.+. ..+..+.......+..++..++...++|++.||.+++||+...
T Consensus       235 gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  235 GEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             ccceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            8 99999996554 4444665333558999999999999999999999999998765

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=5.6e-10  Score=110.65  Aligned_cols=215  Identities=14%  Similarity=0.113  Sum_probs=138.8

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCC---CeEEEEECCCCcEEEE--eCCCCceEEEEecCCCEEE-EEeCCC--cE
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYD---SIVRMWHLEDGFSIAS--SKPLGCTIRAVAADKKLLV-AGGTDG--FI  206 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~d---g~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~-sg~~dg--~i  206 (520)
                      .+.+..|...+.+.+|+|||+.|+.++.+   ..|.+||+.+++....  +.++ .....++|+|+.|+ +.+.+|  .|
T Consensus       196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~-~~~~~~SpDG~~l~~~~s~~g~~~I  274 (433)
T PRK04922        196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGI-NGAPSFSPDGRRLALTLSRDGNPEI  274 (433)
T ss_pred             ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCC-ccCceECCCCCEEEEEEeCCCCceE
Confidence            45566778889999999999999987743   4699999988765332  2222 22346789998775 455555  58


Q ss_pred             EEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec-CCe--EEEEECCCCcEEEEeeeccCE--
Q 009993          207 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DMT--VRVWDRALLKCLKVLRHSDWV--  279 (520)
Q Consensus       207 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg~--v~iwd~~~~~~~~~~~~~~~v--  279 (520)
                      .+||+.++.              ...+..+.......+|  +++.++.++. +|.  |.++|+.+++...........  
T Consensus       275 y~~d~~~g~--------------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~  340 (433)
T PRK04922        275 YVMDLGSRQ--------------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNAR  340 (433)
T ss_pred             EEEECCCCC--------------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccC
Confidence            889987653              2233344444556777  7787776664 444  667777776644332222222  


Q ss_pred             EEEeeCCCEEEEEc-C-C--eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCC---CeEEEEEcccCcccc
Q 009993          280 YGLAPHDTTVASTS-G-S--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED---GAIHMYEIINDCTEA  352 (520)
Q Consensus       280 ~~~~~~~~~l~~~~-d-~--~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d---g~i~iwd~~~~~~~~  352 (520)
                      .+++|+++.++..+ + +  .|.+||+.+++.. .+.  +........|+|+|+.++..+.+   +.|.++++...    
T Consensus       341 ~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~----  413 (433)
T PRK04922        341 ASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR----  413 (433)
T ss_pred             EEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----
Confidence            35669999988765 3 2  5999999887654 332  22234567899999988776653   35777777543    


Q ss_pred             ceeeeeeecCCcCCEEEEEecC
Q 009993          353 NVLLVATWIPHTGPVNSLAFEF  374 (520)
Q Consensus       353 ~~~~~~~~~~h~~~v~~l~~~~  374 (520)
                         ....+..+.+.+...+|+|
T Consensus       414 ---~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        414 ---VRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             ---ceEEcccCCCCCCCCccCC
Confidence               2333444455666666665

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.29  E-value=6.1e-10  Score=105.70  Aligned_cols=205  Identities=18%  Similarity=0.168  Sum_probs=149.5

Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceE
Q 009993          152 ASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF  231 (520)
Q Consensus       152 ~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  231 (520)
                      |...++|....||.+++|+..+++....+.+..              ..+..++-..|.+.-+..         .. ...
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~--------------~~s~t~~~~~w~L~~~~s---------~~-k~~   58 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA--------------SLSGTCTYTKWGLSADYS---------PM-KWL   58 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccch--------------hccCcceeEEEEEEeccc---------hH-HHH
Confidence            456789999999999999999988776665321              112223333454321110         00 000


Q ss_pred             EeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee---eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCC
Q 009993          232 RLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSG  305 (520)
Q Consensus       232 ~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~  305 (520)
                      .    ...+...+-+...++-|...|.|.+|+...++....+.   |.+.|+++.  .+-..|.+++ |..+..|+...+
T Consensus        59 ~----~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~  134 (541)
T KOG4547|consen   59 S----LEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK  134 (541)
T ss_pred             h----HHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc
Confidence            0    01111122244568888999999999999999988886   889999987  4455677777 899999999999


Q ss_pred             eeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe--c-----CCE-E
Q 009993          306 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--E-----FPW-L  377 (520)
Q Consensus       306 ~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~-----~~~-l  377 (520)
                      ..+..+. .....+.+++.+|||..+++++  +.|++||+++.      +.+.++.+|.++|++++|  +     +.+ |
T Consensus       135 ~~~~~~~-~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~k------evv~~ftgh~s~v~t~~f~~~~~g~~G~~vL  205 (541)
T KOG4547|consen  135 VIIRIWK-EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETK------EVVITFTGHGSPVRTLSFTTLIDGIIGKYVL  205 (541)
T ss_pred             eeeeeec-cCCCccceEEEcCCCCEEEecc--ceEEEEEccCc------eEEEEecCCCcceEEEEEEEeccccccceee
Confidence            9988887 4677899999999999999885  67999999999      899999999999999999  2     244 4


Q ss_pred             EEEeCCCcEEEEeCCc
Q 009993          378 VSAAGDGKLSLIDVRK  393 (520)
Q Consensus       378 ~s~s~dg~i~vwd~~~  393 (520)
                      .+...+.-+.+|-+..
T Consensus       206 ssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  206 SSAAAERGITVWVVEK  221 (541)
T ss_pred             eccccccceeEEEEEc
Confidence            4555677788887765

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=1.3e-09  Score=107.78  Aligned_cols=216  Identities=15%  Similarity=0.111  Sum_probs=135.2

Q ss_pred             hhhccccccEEEEEEccCCCEEEEEeCC---CeEEEEECCCCcEEEE--eCCCCceEEEEecCCCEEE-EEeCCCcEEEE
Q 009993          136 DVLYGHTEAVLTVFVLASAKLLFTSGYD---SIVRMWHLEDGFSIAS--SKPLGCTIRAVAADKKLLV-AGGTDGFIHCW  209 (520)
Q Consensus       136 ~~l~~h~~~V~~l~~~~~~~~l~sgs~d---g~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~-sg~~dg~i~vw  209 (520)
                      +.+..+.+.+.+.+|+|||+.|+..+.+   ..|.+||+.+++....  +.++ .....++|+|+.|+ +.+.+|...+|
T Consensus       189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~-~~~~~~SPDG~~la~~~~~~g~~~Iy  267 (427)
T PRK02889        189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGS-NSAPAWSPDGRTLAVALSRDGNSQIY  267 (427)
T ss_pred             eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCC-ccceEECCCCCEEEEEEccCCCceEE
Confidence            4456778889999999999999877653   4599999998865432  2322 22346789999876 56778887777


Q ss_pred             EcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec-CCeEEEEEC--CCCcEEEEeeecc--CEEEE
Q 009993          210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDR--ALLKCLKVLRHSD--WVYGL  282 (520)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg~v~iwd~--~~~~~~~~~~~~~--~v~~~  282 (520)
                      .+....            .....+..+.+.+....|  ||+.++..+. +|...+|.+  .+++.........  .-..+
T Consensus       268 ~~d~~~------------~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~  335 (427)
T PRK02889        268 TVNADG------------SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRI  335 (427)
T ss_pred             EEECCC------------CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEE
Confidence            653211            112334444445556677  7787776554 456666654  4544332222221  12356


Q ss_pred             eeCCCEEEEEc-CC---eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCC---eEEEEEcccCcccccee
Q 009993          283 APHDTTVASTS-GS---DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG---AIHMYEIINDCTEANVL  355 (520)
Q Consensus       283 ~~~~~~l~~~~-d~---~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg---~i~iwd~~~~~~~~~~~  355 (520)
                      +|+|++++..+ ++   .|.+||+.+++......   ........|+|+|+.|+.++.++   .+.+.++. +      .
T Consensus       336 SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~---~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g------~  405 (427)
T PRK02889        336 SPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD---TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G------R  405 (427)
T ss_pred             CCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC---CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-C------C
Confidence            69999988766 33   59999998886543322   22346789999999888776544   25555553 2      2


Q ss_pred             eeeeecCCcCCEEEEEecC
Q 009993          356 LVATWIPHTGPVNSLAFEF  374 (520)
Q Consensus       356 ~~~~~~~h~~~v~~l~~~~  374 (520)
                      ....+..+.+.+...+|+|
T Consensus       406 ~~~~l~~~~g~~~~p~wsp  424 (427)
T PRK02889        406 IKQRLSVQGGDVREPSWGP  424 (427)
T ss_pred             ceEEeecCCCCCCCCccCC
Confidence            3333444556667677765

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=1.2e-09  Score=97.48  Aligned_cols=231  Identities=18%  Similarity=0.246  Sum_probs=145.3

Q ss_pred             EEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEe-ccCCCCeEEEEE---cCCEEEEEecCCeEEEEE
Q 009993          188 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL-WEHEGPITSLAL---DLTRIYSGSWDMTVRVWD  263 (520)
Q Consensus       188 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd  263 (520)
                      .++.+.-..++++..|-.|++||-....              ...+ ......|+|++|   .+..|+.|+.. -|.+|.
T Consensus       104 ~aWhqH~~~fava~nddvVriy~ksst~--------------pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~  168 (445)
T KOG2139|consen  104 VAWHQHIIAFAVATNDDVVRIYDKSSTC--------------PTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWS  168 (445)
T ss_pred             EeechhhhhhhhhccCcEEEEeccCCCC--------------CceecchhhcceeEEEeccCCcceeeeeecc-eeEEEE
Confidence            3444444567889999999999865432              1112 124568999999   45678888875 488997


Q ss_pred             CCCC----c--------EEEEee--eccCEEEEe--eCCCEEEEEc--CCeEEEEECCCCeeeEEeecccccceEEEEec
Q 009993          264 RALL----K--------CLKVLR--HSDWVYGLA--PHDTTVASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARS  325 (520)
Q Consensus       264 ~~~~----~--------~~~~~~--~~~~v~~~~--~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s  325 (520)
                      ....    .        ....++  ...+|+++.  ++|..+++++  +..|.|||+.++..+.... ...+.+.-+.||
T Consensus       169 ~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-~glgg~slLkwS  247 (445)
T KOG2139|consen  169 DSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLKWS  247 (445)
T ss_pred             cCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc-cCCCceeeEEEc
Confidence            5421    1        122233  336788887  8899999998  6889999999998766553 256778899999


Q ss_pred             CCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--C-EEEEEeCCCcEEEEeCCcccccCCCC-
Q 009993          326 HTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P-WLVSAAGDGKLSLIDVRKLLRSGRPT-  401 (520)
Q Consensus       326 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~s~dg~i~vwd~~~~~~~~~~~-  401 (520)
                      |||++|+++.-|+..++|+....      .......-..+.|..-.|+|  . .|++.+..-.+  |.+.-..+..... 
T Consensus       248 Pdgd~lfaAt~davfrlw~e~q~------wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~l--ysl~f~~~~~~~~~  319 (445)
T KOG2139|consen  248 PDGDVLFAATCDAVFRLWQENQS------WTKERWILGSGRVQTACWSPCGSFLLFACSGSPRL--YSLTFDGEDSVFLR  319 (445)
T ss_pred             CCCCEEEEecccceeeeehhccc------ceecceeccCCceeeeeecCCCCEEEEEEcCCceE--EEEeecCCCccccC
Confidence            99999999999999999965544      12222223345899999987  3 55666555444  4433222221111 


Q ss_pred             --CCCceeeeeecCCC----cccccCcceeeEEEEecCCEEEEecCC
Q 009993          402 --SGKRVSRVIEVEPP----QRMLHGFECNLLSVDIGADRIVCGGEE  442 (520)
Q Consensus       402 --~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~l~sg~~D  442 (520)
                        ..+....+.++...    .+.+-+.....++++++|.+||+.-..
T Consensus       320 ~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg  366 (445)
T KOG2139|consen  320 PQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG  366 (445)
T ss_pred             cccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence              11111111111111    012234556677888888888875543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.26  E-value=2.5e-11  Score=113.62  Aligned_cols=249  Identities=18%  Similarity=0.234  Sum_probs=170.2

Q ss_pred             EEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEE
Q 009993          177 IASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYS  252 (520)
Q Consensus       177 ~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s  252 (520)
                      +..+.+|...|.++.  .+.+.+++++.|++|++|.++...      .+.....+..++..|+.+|.++.|  +-++++ 
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~Eg------D~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~-  800 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEG------DEIGTSACQFTYQAHKKPIHDIGFLADLRSIA-  800 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEecccc------CccccceeeeEhhhccCcccceeeeeccceee-
Confidence            456678988888876  677889999999999999986531      112234577889999999999999  444555 


Q ss_pred             EecCCeEEEEECCCCcEEEEee------eccCEEEEee-CCCEEEEE-c-CCeEEEEECCCCeeeEEee----cccccce
Q 009993          253 GSWDMTVRVWDRALLKCLKVLR------HSDWVYGLAP-HDTTVAST-S-GSDVYIWDTNSGCLLTVVN----GAHVGNT  319 (520)
Q Consensus       253 ~s~dg~v~iwd~~~~~~~~~~~------~~~~v~~~~~-~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~----~~~~~~i  319 (520)
                       +.||-|.+||.--++.+....      ..+.|.++.. +...+.++ + ..+|+++|.+.++-...+.    .+....+
T Consensus       801 -ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~  879 (1034)
T KOG4190|consen  801 -SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALT  879 (1034)
T ss_pred             -eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhe
Confidence             457889999987776655432      2345666663 55555555 4 7999999999987655544    2345678


Q ss_pred             EEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe-cCCEEEEEeCCCcEEE-EeCCccccc
Q 009993          320 KSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF-EFPWLVSAAGDGKLSL-IDVRKLLRS  397 (520)
Q Consensus       320 ~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~v-wd~~~~~~~  397 (520)
                      .+++..+.|++++++-.+|+|.+.|.+++      +.+..+.........++. +.+.|+....|.++.| |..-.+...
T Consensus       880 R~iaVa~~GN~lAa~LSnGci~~LDaR~G------~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh  953 (1034)
T KOG4190|consen  880 RAIAVADKGNKLAAALSNGCIAILDARNG------KVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMH  953 (1034)
T ss_pred             eEEEeccCcchhhHHhcCCcEEEEecCCC------ceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeee
Confidence            89999999999999999999999999999      556666555444444444 4468888888999998 876654221


Q ss_pred             CCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHH
Q 009993          398 GRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIER  458 (520)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~  458 (520)
                      ....         ....+...+.          .-|.-++++.....+.+|.-........
T Consensus       954 ~q~k---------pppepahflq----------svgpSLV~a~~Gn~lgVYad~a~~ha~s  995 (1034)
T KOG4190|consen  954 LQDK---------PPPEPAHFLQ----------SVGPSLVTAQNGNILGVYADSAELHAES  995 (1034)
T ss_pred             eccC---------CCCcchhhhh----------ccCceeEEeccCcEEEEEecchhhhhhh
Confidence            1100         0011111111          1134677777778889986554443333

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.25  E-value=7.1e-11  Score=124.56  Aligned_cols=208  Identities=16%  Similarity=0.227  Sum_probs=146.7

Q ss_pred             EeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCC
Q 009993          160 SGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE  237 (520)
Q Consensus       160 gs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~  237 (520)
                      ...++...-|..+.+....  +.+-..|.++.  |...+.+||+.||.|++|....+..           .......+. 
T Consensus      2186 ~n~~~~~~tq~~~~~~~~~--k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~-----------v~~~rt~g~- 2251 (2439)
T KOG1064|consen 2186 SNLPWLGSTQTSRGASVMI--KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ-----------VVCFRTAGN- 2251 (2439)
T ss_pred             ccCCccccceecccceeEe--ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCe-----------EEEeeccCc-
Confidence            3334444555544332222  22233455565  7778899999999999999865531           122223333 


Q ss_pred             CCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEeeCCCEEEEEc----CCeEEEEECCCCeeeEE
Q 009993          238 GPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTS----GSDVYIWDTNSGCLLTV  310 (520)
Q Consensus       238 ~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~----d~~i~iwd~~~~~~~~~  310 (520)
                      ..|+.+.|  .|+.+..+..||.+-+|.+. .+.....+ |......+..-+..+++++    ++.+.+||..-.....-
T Consensus      2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~ 2330 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSL 2330 (2439)
T ss_pred             chhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccce
Confidence            77888888  78889999999999999987 33333333 6666777775556666654    47899999765443333


Q ss_pred             eecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEe
Q 009993          311 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLID  390 (520)
Q Consensus       311 ~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd  390 (520)
                      +...|.+.++++++.|..+.|++|+.+|.|++||++..      +...++..       +. ...++++|+..|.|+||+
T Consensus      2331 v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr------ql~h~~~~-------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2331 VHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR------QLRHTFQA-------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred             eeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH------HHHHHhhh-------hh-hhheeeccCcccceEEEE
Confidence            44579999999999999999999999999999999988      44444432       22 457999999999999999


Q ss_pred             CCcccc
Q 009993          391 VRKLLR  396 (520)
Q Consensus       391 ~~~~~~  396 (520)
                      +.....
T Consensus      2397 ~s~~~l 2402 (2439)
T KOG1064|consen 2397 LSEFGL 2402 (2439)
T ss_pred             ccccch
Confidence            987633

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.24  E-value=1.3e-09  Score=94.58  Aligned_cols=237  Identities=14%  Similarity=0.129  Sum_probs=159.0

Q ss_pred             cccEEEEEEcc---CCC-EEEEEeCCCeEEEEECCCCcEEEEeCCCC--------ceEEEEecCCCEEEEEeCCCcEEEE
Q 009993          142 TEAVLTVFVLA---SAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLG--------CTIRAVAADKKLLVAGGTDGFIHCW  209 (520)
Q Consensus       142 ~~~V~~l~~~~---~~~-~l~sgs~dg~v~vwd~~~~~~~~~~~~~~--------~~v~~~~~~~~~l~sg~~dg~i~vw  209 (520)
                      +..+..+.|..   +|. .++-+..+|.|.++..........+.+-.        .-...+++.+..++++..+|.+.+-
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            34455566652   344 55666778899999876555544444322        1222344778889999999999855


Q ss_pred             EcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECC-CCcEEEEe--eeccCEEEEe
Q 009993          210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRA-LLKCLKVL--RHSDWVYGLA  283 (520)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~-~~~~~~~~--~~~~~v~~~~  283 (520)
                      +.....           .......+.|.-+.....|   +++.+++|+.|+.+..||++ .++.+..-  .|...|.++.
T Consensus       149 ~~t~~~-----------le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~  217 (339)
T KOG0280|consen  149 YETEMV-----------LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIY  217 (339)
T ss_pred             ecceee-----------eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEe
Confidence            543321           2344567789999998888   67899999999999999999 34444432  2888899987


Q ss_pred             ---eCCCEEEEEc-CCeEEEEECCC-CeeeEEeecccccceEEEEecCCC--CEEEEEeCCCeEEEEEcccCccccceee
Q 009993          284 ---PHDTTVASTS-GSDVYIWDTNS-GCLLTVVNGAHVGNTKSLARSHTG--DFLFTGGEDGAIHMYEIINDCTEANVLL  356 (520)
Q Consensus       284 ---~~~~~l~~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~i~~l~~s~~~--~~l~tg~~dg~i~iwd~~~~~~~~~~~~  356 (520)
                         +.+.++++|+ |..|++||.++ ++++..-.  -.+.|+.+..+|.-  ..++++-.+| .+|-+......... ..
T Consensus       218 ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~-~~  293 (339)
T KOG0280|consen  218 SSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQ-IV  293 (339)
T ss_pred             cCCCCCceEEEeccccceeeeehhcccCccccCc--cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchh-ee
Confidence               6778999999 99999999994 56665543  56899999999843  2344443344 67777766533211 23


Q ss_pred             eeeecCCcCCEEEEEecC--CEEEEEe-CCCcEE-EEeCCc
Q 009993          357 VATWIPHTGPVNSLAFEF--PWLVSAA-GDGKLS-LIDVRK  393 (520)
Q Consensus       357 ~~~~~~h~~~v~~l~~~~--~~l~s~s-~dg~i~-vwd~~~  393 (520)
                      ......|.+-++.-.|+.  ..|+|++ .|..++ +|-.-+
T Consensus       294 ~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t  334 (339)
T KOG0280|consen  294 LPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT  334 (339)
T ss_pred             eeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence            444556777677667743  4677765 577755 775544

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.24  E-value=1.9e-09  Score=94.95  Aligned_cols=298  Identities=14%  Similarity=0.106  Sum_probs=177.7

Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCC-CceEEEEecCCCE-EEEEeCCCcEEEEEcccCcceeeeccCCc
Q 009993          148 VFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPL-GCTIRAVAADKKL-LVAGGTDGFIHCWRAVEVLPHLFDISGSE  225 (520)
Q Consensus       148 l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~-l~sg~~dg~i~vwd~~~~~~~~~~~~~~~  225 (520)
                      ++|+|+|+++|+.+.- .+.|=|.++-+....+.-- ...-..++.+..+ |.....|+.|.+|++...+          
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe----------   82 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE----------   82 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecce----------
Confidence            4799999999999865 6778787766543322110 0111233344444 4556778999999986542          


Q ss_pred             cccceEEeccCCCCeEEEEE--cC-CEEEEEecCCeEEEEECCCCcEEEEee--eccCEEEEeeCCCEEEEEc--C----
Q 009993          226 KQNTQFRLWEHEGPITSLAL--DL-TRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLAPHDTTVASTS--G----  294 (520)
Q Consensus       226 ~~~~~~~~~~h~~~v~~l~~--~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~--d----  294 (520)
                         -...+.....++.+++|  +| ..|.+...|-.|.+|.+.+.+....--  +.....++.++|++.+..+  |    
T Consensus        83 ---w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdy  159 (447)
T KOG4497|consen   83 ---WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDY  159 (447)
T ss_pred             ---eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHH
Confidence               34455566788999999  66 456677789999999998876654432  4445555667887766654  2    


Q ss_pred             -------------------------------CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993          295 -------------------------------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY  343 (520)
Q Consensus       295 -------------------------------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iw  343 (520)
                                                     ..+.+||.--.-.+..+.  ..-.+..++|+|.+++|++|+.|+.+++-
T Consensus       160 v~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe--~~lG~k~v~wsP~~qflavGsyD~~lrvl  237 (447)
T KOG4497|consen  160 VQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE--RGLGLKFVEWSPCNQFLAVGSYDQMLRVL  237 (447)
T ss_pred             HHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee--eccceeEEEeccccceEEeeccchhhhhh
Confidence                                           123334322111122221  23468889999999999999999998875


Q ss_pred             EcccCccc------------------------------------------------------cceeeeeeec------CC
Q 009993          344 EIINDCTE------------------------------------------------------ANVLLVATWI------PH  363 (520)
Q Consensus       344 d~~~~~~~------------------------------------------------------~~~~~~~~~~------~h  363 (520)
                      +--+.+.-                                                      ..+..+..++      ..
T Consensus       238 nh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnP  317 (447)
T KOG4497|consen  238 NHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNP  317 (447)
T ss_pred             ceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCc
Confidence            43211000                                                      0000111111      12


Q ss_pred             cCCEEEEEecC--CEEEEEeC--CCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEE
Q 009993          364 TGPVNSLAFEF--PWLVSAAG--DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIV  437 (520)
Q Consensus       364 ~~~v~~l~~~~--~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~  437 (520)
                      ...+.-++|++  .++++-.+  -+.+-+||++.....                  ......|  +|.++.+++.  .|+
T Consensus       318 k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~------------------avLiQk~--piraf~WdP~~prL~  377 (447)
T KOG4497|consen  318 KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLH------------------AVLIQKH--PIRAFEWDPGRPRLV  377 (447)
T ss_pred             ccccceeeecCCceEEeeecCCCCceEEEEechhhhhh------------------hhhhhcc--ceeEEEeCCCCceEE
Confidence            23466778876  35555443  267899999874211                  1112223  3555555554  666


Q ss_pred             EecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccc
Q 009993          438 CGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCS  492 (520)
Q Consensus       438 sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s  492 (520)
                      .+.....+++|...-...+..   +.+|        -.+..+.+.-+|..++.++
T Consensus       378 vctg~srLY~W~psg~~~V~v---P~~G--------F~i~~l~W~~~g~~i~l~~  421 (447)
T KOG4497|consen  378 VCTGKSRLYFWAPSGPRVVGV---PKKG--------FNIQKLQWLQPGEFIVLCG  421 (447)
T ss_pred             EEcCCceEEEEcCCCceEEec---CCCC--------ceeeeEEecCCCcEEEEEc
Confidence            665556799998876433322   1111        3456788888888877754

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.24  E-value=2e-10  Score=107.34  Aligned_cols=159  Identities=14%  Similarity=0.122  Sum_probs=113.3

Q ss_pred             cccEEEEEEccCC-CEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeee
Q 009993          142 TEAVLTVFVLASA-KLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD  220 (520)
Q Consensus       142 ~~~V~~l~~~~~~-~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  220 (520)
                      +..|+|+.|-|.+ ..++.+-.+|.+.++|.+.      ..+...+....-+++..+.....-+       ...      
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~------~~~~t~p~~~~~k~~~~f~i~t~ks-------k~~------  279 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI------VCGATAPSYQALKDGDQFAILTSKS-------KKT------  279 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccc------cccCCCCcccccCCCCeeEEeeeec-------ccc------
Confidence            4789999999854 5666777899999998721      1111122222224444443322111       000      


Q ss_pred             ccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-C
Q 009993          221 ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-G  294 (520)
Q Consensus       221 ~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d  294 (520)
                            ..++....--.+.|..++|  |+.+|++.+.||.+||||+.+.+.+...+ .-+...|++  |||++|++|+ |
T Consensus       280 ------rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGED  353 (636)
T KOG2394|consen  280 ------RNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGED  353 (636)
T ss_pred             ------CCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCc
Confidence                  1233333334568888999  88999999999999999999988777766 445556655  9999999999 9


Q ss_pred             CeEEEEECCCCeeeEEeecccccceEEEEecC
Q 009993          295 SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH  326 (520)
Q Consensus       295 ~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~  326 (520)
                      .-|.||.+..++.+..-. +|.+.|..++|.|
T Consensus       354 DLVtVwSf~erRVVARGq-GHkSWVs~VaFDp  384 (636)
T KOG2394|consen  354 DLVTVWSFEERRVVARGQ-GHKSWVSVVAFDP  384 (636)
T ss_pred             ceEEEEEeccceEEEecc-ccccceeeEeecc
Confidence            999999999999888876 7999999999987

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=99.22  E-value=1e-11  Score=80.12  Aligned_cols=45  Identities=33%  Similarity=0.637  Sum_probs=40.3

Q ss_pred             ccCCCHHHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhhhh
Q 009993           64 ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFY  108 (520)
Q Consensus        64 ~~~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~~~  108 (520)
                      +..||+|++.+||+||++.++.++++|||+|+.++.++.+|+.++
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~   45 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC   45 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence            467999999999999999999999999999999999889999864

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=1.3e-08  Score=96.21  Aligned_cols=314  Identities=13%  Similarity=0.094  Sum_probs=185.1

Q ss_pred             ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEE-----eCC-----CcEEEEEcc
Q 009993          143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAG-----GTD-----GFIHCWRAV  212 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg-----~~d-----g~i~vwd~~  212 (520)
                      ..+...+++++|++++.+ .+..++|++..++..+.+.......-..++|.+++|.+=     ..+     -.+.+|+++
T Consensus        35 ~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ve  113 (566)
T KOG2315|consen   35 RPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVE  113 (566)
T ss_pred             CcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeeec
Confidence            345677889989877765 467899999998865555544444444556878777651     112     346689887


Q ss_pred             cCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--e--CCC
Q 009993          213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--P--HDT  287 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~--~~~  287 (520)
                      ++.. .+          ........+  .+..| ....++.--..+.+++|+....+.+..--|...|..+.  |  ...
T Consensus       114 t~~~-~s----------~~q~k~Q~~--W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~  180 (566)
T KOG2315|consen  114 TGVQ-RS----------QIQKKMQNG--WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPP  180 (566)
T ss_pred             ccee-hh----------heehhhhcC--cccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCc
Confidence            7421 10          111111122  35566 22223332334679999988754443333556666555  3  344


Q ss_pred             EEEEEc------CCeEEEEECCCCeeeEEeec--ccccceEEEEecCCCCE-EE--EEeCC---------CeEEEEEccc
Q 009993          288 TVASTS------GSDVYIWDTNSGCLLTVVNG--AHVGNTKSLARSHTGDF-LF--TGGED---------GAIHMYEIIN  347 (520)
Q Consensus       288 ~l~~~~------d~~i~iwd~~~~~~~~~~~~--~~~~~i~~l~~s~~~~~-l~--tg~~d---------g~i~iwd~~~  347 (520)
                      .+++--      -+.|+||.......-..+..  =....-..+.|++.|.- |+  +..-|         .++++.++..
T Consensus       181 ~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g  260 (566)
T KOG2315|consen  181 FVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG  260 (566)
T ss_pred             eEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC
Confidence            555522      25699998763222111100  01112235678876653 22  22223         3578888773


Q ss_pred             CccccceeeeeeecCCcCCEEEEEecCC----EEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcc
Q 009993          348 DCTEANVLLVATWIPHTGPVNSLAFEFP----WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE  423 (520)
Q Consensus       348 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (520)
                      .      .....+ ...++|.++.|++.    -++-|-.-..+.|+|++..                    +...+....
T Consensus       261 ~------s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~--------------------~v~df~egp  313 (566)
T KOG2315|consen  261 E------SVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK--------------------PVFDFPEGP  313 (566)
T ss_pred             c------eEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC--------------------EeEeCCCCC
Confidence            3      222222 34789999999873    3445556788999999852                    111122223


Q ss_pred             eeeEEEEecCCEEEEecC---CCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccccccccCCC
Q 009993          424 CNLLSVDIGADRIVCGGE---EGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPM  500 (520)
Q Consensus       424 ~~v~~~~~~~~~l~sg~~---Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~~~~~~~  500 (520)
                      ....-+.+.+++|+.+|.   -|.|-|||+.+.+++.+...+            .-+-++|+|||.++.++..+..-..-
T Consensus       314 RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~------------~tt~~eW~PdGe~flTATTaPRlrvd  381 (566)
T KOG2315|consen  314 RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA------------NTTVFEWSPDGEYFLTATTAPRLRVD  381 (566)
T ss_pred             ccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC------------CceEEEEcCCCcEEEEEeccccEEec
Confidence            344556677787777664   578999999997766653222            23678999999999999988776655


Q ss_pred             CCCcceeeecc
Q 009993          501 NGNRRSVWHNK  511 (520)
Q Consensus       501 ~~~~~~~~~~~  511 (520)
                      +|  ..|||--
T Consensus       382 Ng--~Kiwhyt  390 (566)
T KOG2315|consen  382 NG--IKIWHYT  390 (566)
T ss_pred             CC--eEEEEec
Confidence            44  4599864

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=4.3e-09  Score=104.55  Aligned_cols=196  Identities=13%  Similarity=0.029  Sum_probs=129.4

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeC---CCeEEEEECCCCcEEEEeCCCCce--EEEEecCCCEEE-EEeCCCc--E
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGY---DSIVRMWHLEDGFSIASSKPLGCT--IRAVAADKKLLV-AGGTDGF--I  206 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~---dg~v~vwd~~~~~~~~~~~~~~~~--v~~~~~~~~~l~-sg~~dg~--i  206 (520)
                      .+.+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++... +..+...  -..++|+|+.|+ +.+.+|.  |
T Consensus       194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I  272 (435)
T PRK05137        194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI  272 (435)
T ss_pred             cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence            4557788889999999999999887764   4689999998886532 2222222  335779998775 5566665  6


Q ss_pred             EEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec-CC--eEEEEECCCCcEEEEeeeccCEE-
Q 009993          207 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DM--TVRVWDRALLKCLKVLRHSDWVY-  280 (520)
Q Consensus       207 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg--~v~iwd~~~~~~~~~~~~~~~v~-  280 (520)
                      .+||+.++.              ...+..+........|  |++.++..+. +|  .|.++|+.+++..........+. 
T Consensus       273 y~~d~~~~~--------------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~  338 (435)
T PRK05137        273 YTMDLRSGT--------------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYST  338 (435)
T ss_pred             EEEECCCCc--------------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccC
Confidence            667776552              2334445555566777  7787776663 33  68888987765544333333333 


Q ss_pred             -EEeeCCCEEEEEc-C---CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCC------CeEEEEEcccC
Q 009993          281 -GLAPHDTTVASTS-G---SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED------GAIHMYEIIND  348 (520)
Q Consensus       281 -~~~~~~~~l~~~~-d---~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d------g~i~iwd~~~~  348 (520)
                       .++|+++.++... +   ..|.+||+..+.. ..+.  ....+....|+|||+.|+..+.+      ..++++|+...
T Consensus       339 ~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt--~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        339 PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT--SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             eEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc--CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence             3569999988765 3   3588899866543 3333  22346788999999988765443      25777787655

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.20  E-value=1.7e-10  Score=111.78  Aligned_cols=286  Identities=14%  Similarity=0.230  Sum_probs=178.9

Q ss_pred             cccEEEEEEccCCCEEEEEeCCCeEEEEECCCC-c---EEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCc
Q 009993          142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-F---SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVL  215 (520)
Q Consensus       142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~-~---~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~  215 (520)
                      .+++.++.++|.|+-++.++.-| +.+-|+... .   .+..+.+-...-+.++  +...+-++......-.+|++... 
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s-  101 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS-  101 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC-
Confidence            45677888999999999998877 566676543 2   2222222222223333  33333333344444557887543 


Q ss_pred             ceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcE-EEEee-eccCEEEEe---eCCC
Q 009993          216 PHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKC-LKVLR-HSDWVYGLA---PHDT  287 (520)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~-~~~~v~~~~---~~~~  287 (520)
                               ......+.+.+|...|+.+.|   ++..+++++.|-.|..||+++... +.... -......+.   .++.
T Consensus       102 ---------s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~  172 (1081)
T KOG0309|consen  102 ---------SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPN  172 (1081)
T ss_pred             ---------CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcc
Confidence                     334567788999999999999   557899999999999999987643 33332 111222233   5677


Q ss_pred             EEEEEcCCeEEEEECCCCe-eeEEeecccccceEEEEecC-CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcC
Q 009993          288 TVASTSGSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG  365 (520)
Q Consensus       288 ~l~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~i~~l~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  365 (520)
                      .+++..+..|.+||.+.|. ++..++ +|...|+.+.|.. ....+.+++.||+|++||.......     -........
T Consensus       173 vlasshg~~i~vwd~r~gs~pl~s~K-~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e-----~~~~vtt~~  246 (1081)
T KOG0309|consen  173 VLASSHGNDIFVWDLRKGSTPLCSLK-GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE-----SKRTVTTNF  246 (1081)
T ss_pred             hhhhccCCceEEEeccCCCcceEEec-ccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc-----cceeccccC
Confidence            7777779999999999875 455555 5888899998865 3456889999999999998766321     111112233


Q ss_pred             CEEEEEecC----CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEec---------
Q 009993          366 PVNSLAFEF----PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG---------  432 (520)
Q Consensus       366 ~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---------  432 (520)
                      +|..-.+-|    .++.---.+..+-+++-++....         ..+.....++..+.||...|..+-|.         
T Consensus       247 piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e---------~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~  317 (1081)
T KOG0309|consen  247 PIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLE---------WNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDY  317 (1081)
T ss_pred             cceeccccccCceeEeccccCCeeeeeccccchhhh---------hccccCCcceeeecCcchHHHHHhhhhcccccCCC
Confidence            444444433    12211112223444443331110         11112255667788888888776652         


Q ss_pred             -CC--EEEEecCCCeEEEEeCCch
Q 009993          433 -AD--RIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       433 -~~--~l~sg~~Dg~v~iwd~~~~  453 (520)
                       .+  .|+|=+.|..+|+|-+.+.
T Consensus       318 d~rdfQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  318 DSRDFQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             CccceeEEEeecCCceEeeeccHH
Confidence             11  8999999999999999864

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.19  E-value=9.2e-11  Score=109.89  Aligned_cols=239  Identities=18%  Similarity=0.213  Sum_probs=160.5

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCC-------CcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCc
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED-------GFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGF  205 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~-------~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~  205 (520)
                      +..+.||+..|..++--.+.+-+++++.|++|++|.+..       ..+..+++.|..+|..+.  .+.++++  +.||-
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA--SCDGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee--eccCc
Confidence            556889999999988777788899999999999999853       245667889999988876  4444554  56899


Q ss_pred             EEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEE-ecCCeEEEEECCCCcEEEEee------ecc
Q 009993          206 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSG-SWDMTVRVWDRALLKCLKVLR------HSD  277 (520)
Q Consensus       206 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~------~~~  277 (520)
                      |++||.--+....        ...-..-.+-.+.|.|+.- +...++.| +...+|+++|.+..+....++      ...
T Consensus       806 iHlWDPFigr~La--------q~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna  877 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLA--------QMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNA  877 (1034)
T ss_pred             ceeecccccchhH--------hhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCch
Confidence            9999964432110        0000011122344555544 45555555 778999999999988777665      224


Q ss_pred             CEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEE-EEcccCccccc
Q 009993          278 WVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHM-YEIINDCTEAN  353 (520)
Q Consensus       278 ~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~i-wd~~~~~~~~~  353 (520)
                      .+.++.  +.|+.++++- +|.|.+.|.++|+.+..+.. .......++ .|..+.++....|.++.+ |..-.+     
T Consensus       878 ~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp-mecdllqla-apsdq~L~~saldHslaVnWhaldg-----  950 (1034)
T KOG4190|consen  878 LTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP-MECDLLQLA-APSDQALAQSALDHSLAVNWHALDG-----  950 (1034)
T ss_pred             heeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc-ccchhhhhc-CchhHHHHhhcccceeEeeehhcCC-----
Confidence            455555  8899999887 89999999999998876652 333333333 355667777778888888 876665     


Q ss_pred             eeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeC
Q 009993          354 VLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDV  391 (520)
Q Consensus       354 ~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~  391 (520)
                       ....+......+..-+.--+..|+++.....+.||.-
T Consensus       951 -imh~q~kpppepahflqsvgpSLV~a~~Gn~lgVYad  987 (1034)
T KOG4190|consen  951 -IMHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYAD  987 (1034)
T ss_pred             -eeeeccCCCCcchhhhhccCceeEEeccCcEEEEEec
Confidence             2333333333333333334567778777778888854

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.18  E-value=6.8e-10  Score=94.66  Aligned_cols=248  Identities=16%  Similarity=0.167  Sum_probs=148.8

Q ss_pred             cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCC--CCeEEEEEcCCEEEEEecCCeEEEEECCCCcE
Q 009993          192 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE--GPITSLALDLTRIYSGSWDMTVRVWDRALLKC  269 (520)
Q Consensus       192 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~  269 (520)
                      .....|+++..++.+......++......- ..........+..|.  ++-.....-++.++++..||.+.+++.+.-..
T Consensus        45 v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~-rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~  123 (319)
T KOG4714|consen   45 SAEYILFTGETSSQIISLGKGRGRCISLWE-RDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLA  123 (319)
T ss_pred             hhhheeecccchhheeeeccceEEEechhh-cccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHh
Confidence            345566777777666655543332110000 000111222222232  33444445678899999999999999765211


Q ss_pred             E-EEee---eccCEEEEeeCCCEEEEEcC------CeEEEEECCCCeeeEEeecccccceEEEEecCCC-CEEEEEeCCC
Q 009993          270 L-KVLR---HSDWVYGLAPHDTTVASTSG------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDG  338 (520)
Q Consensus       270 ~-~~~~---~~~~v~~~~~~~~~l~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~tg~~dg  338 (520)
                      + ..+.   ....-.++...++.+.++.-      +..+.|+++..+....-.. ....|.+++-+|.. ..+++|+.||
T Consensus       124 ~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg  202 (319)
T KOG4714|consen  124 LMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDG  202 (319)
T ss_pred             hhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc-ccccchhhhCCcccccEEEEecCCC
Confidence            1 1111   11111222345555555442      4456666654332221111 23348999999955 5677899999


Q ss_pred             eEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCccccc--------CCCCCCCcee
Q 009993          339 AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRS--------GRPTSGKRVS  407 (520)
Q Consensus       339 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~--------~~~~~~~~~~  407 (520)
                      .+-+||.++..     .+...+..|..+++.+-|+|   ..|++++.||.+..||..+....        ..+..+..+.
T Consensus       203 ~~~l~d~rn~~-----~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~  277 (319)
T KOG4714|consen  203 IVGLWDARNVA-----MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVK  277 (319)
T ss_pred             eEEEEEccccc-----chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccccCCccc
Confidence            99999999884     56777889999999999965   79999999999999999842111        1122222222


Q ss_pred             eeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEe
Q 009993          408 RVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWN  449 (520)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd  449 (520)
                      ...++..   .+....-+|.+++..+..|++|++-+.|++++
T Consensus       278 s~i~i~~---ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  278 SRIEITS---LLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             ceEeeec---cccccceeeeeeeccCceEEeccccceEEEec
Confidence            2222221   23444556788888899999999999999875

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.17  E-value=4.3e-08  Score=91.66  Aligned_cols=274  Identities=11%  Similarity=0.090  Sum_probs=157.6

Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCe---------------EEEEECCCCcEEEEeCCCCce-----EEEEecCCCEEEE
Q 009993          140 GHTEAVLTVFVLASAKLLFTSGYDSI---------------VRMWHLEDGFSIASSKPLGCT-----IRAVAADKKLLVA  199 (520)
Q Consensus       140 ~h~~~V~~l~~~~~~~~l~sgs~dg~---------------v~vwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~l~s  199 (520)
                      --...|.-+.|+|.+++|.|=+..+.               +.+||..+|..+..+.....+     +..++.+..+++-
T Consensus        69 ~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~AR  148 (561)
T COG5354          69 FRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVAR  148 (561)
T ss_pred             eecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhh
Confidence            34455666666666666666666666               566666666666665543333     4455544444332


Q ss_pred             EeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC----CEEEE-----EecCCeEEEEECCCCcEE
Q 009993          200 GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL----TRIYS-----GSWDMTVRVWDRALLKCL  270 (520)
Q Consensus       200 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s-----~s~dg~v~iwd~~~~~~~  270 (520)
                      - ....++++++ ++...         ..+...+.  ...|....+.+    ..|+.     ...++++++|.+..+..+
T Consensus       149 v-v~~sl~i~e~-t~n~~---------~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l  215 (561)
T COG5354         149 V-VGSSLYIHEI-TDNIE---------EHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVL  215 (561)
T ss_pred             h-ccCeEEEEec-CCccc---------cCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCee
Confidence            2 2234556654 22100         00111111  24455566632    23332     456788999998866665


Q ss_pred             EEee---eccCEEEEeeCCCEEEEEc------------CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEE--
Q 009993          271 KVLR---HSDWVYGLAPHDTTVASTS------------GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT--  333 (520)
Q Consensus       271 ~~~~---~~~~v~~~~~~~~~l~~~~------------d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~t--  333 (520)
                      .+..   ..+.-.-..+.|+++.+-.            ...+++++++........  .-.++|...+|.|.++.+++  
T Consensus       216 ~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~F~vi~  293 (561)
T COG5354         216 VTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSRFAVIS  293 (561)
T ss_pred             eeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec--cccccceeeeecccCCceeEEe
Confidence            5443   1111111224455443311            256888888754433332  35789999999999887665  


Q ss_pred             EeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCC---CcEEEEeCCcccccCCCCCCCceee
Q 009993          334 GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD---GKLSLIDVRKLLRSGRPTSGKRVSR  408 (520)
Q Consensus       334 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~  408 (520)
                      |-.+..+.++|++..        +. +......=+.+.|+|  ++++.++-|   |.|-+||......            
T Consensus       294 g~~pa~~s~~~lr~N--------l~-~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~------------  352 (561)
T COG5354         294 GYMPASVSVFDLRGN--------LR-FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK------------  352 (561)
T ss_pred             cccccceeecccccc--------eE-EecCCcccccccccCcccEEEEecCCccccceEEeccCCceE------------
Confidence            457889999999877        11 122334456677876  677776654   7899999876321            


Q ss_pred             eeecCCCcccccCcceeeEEEEecCCEEEEec------CCCeEEEEeCCchHh
Q 009993          409 VIEVEPPQRMLHGFECNLLSVDIGADRIVCGG------EEGIVRIWNFSQAFE  455 (520)
Q Consensus       409 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~------~Dg~v~iwd~~~~~~  455 (520)
                            ....+.+.......+++++.++.+..      .|..|.|||+.....
T Consensus       353 ------~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~  399 (561)
T COG5354         353 ------VAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV  399 (561)
T ss_pred             ------EEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence                  11124455566677888888555443      378899999986543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.16  E-value=1.8e-08  Score=98.81  Aligned_cols=265  Identities=10%  Similarity=0.041  Sum_probs=164.5

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCc----------eE-EEEecCCCEEEEEeCCCcEEEEEcccCcceeeec
Q 009993          153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC----------TI-RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDI  221 (520)
Q Consensus       153 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~----------~v-~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  221 (520)
                      .+..+++++.++.+.-+|..+|+.+........          .+ ......+..++.++.+|.+..+|..+|+.. +  
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~-W--  144 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVA-W--  144 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCc-c--
Confidence            366788888899999999999998877643220          00 011234667888889999999999888531 1  


Q ss_pred             cCCccccceEEeccCCCCeE-EEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEE-------EeeCCCEEEEEc
Q 009993          222 SGSEKQNTQFRLWEHEGPIT-SLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYG-------LAPHDTTVASTS  293 (520)
Q Consensus       222 ~~~~~~~~~~~~~~h~~~v~-~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~-------~~~~~~~l~~~~  293 (520)
                                +.... +.+. +....++.++.++.++.+..+|.++|+.+.......+...       +..++..++...
T Consensus       145 ----------~~~~~-~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~  213 (394)
T PRK11138        145 ----------QTKVA-GEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGD  213 (394)
T ss_pred             ----------cccCC-CceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcC
Confidence                      11111 1111 1223566788888899999999999999887763222110       112344444444


Q ss_pred             CCeEEEEECCCCeeeEEeeccccc------ceEEEEecC--CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcC
Q 009993          294 GSDVYIWDTNSGCLLTVVNGAHVG------NTKSLARSH--TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG  365 (520)
Q Consensus       294 d~~i~iwd~~~~~~~~~~~~~~~~------~i~~l~~s~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  365 (520)
                      ++.+..+|..+|+.+.........      ....+..+|  .+..++.++.+|.+..+|..+++      .+....  .+
T Consensus       214 ~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~------~~W~~~--~~  285 (394)
T PRK11138        214 NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ------IVWKRE--YG  285 (394)
T ss_pred             CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC------EEEeec--CC
Confidence            899999999999877665321110      011111223  35677778889999999999884      222221  11


Q ss_pred             CEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeE
Q 009993          366 PVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIV  445 (520)
Q Consensus       366 ~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v  445 (520)
                      ....+...+..++.++.+|.+..+|..++.........         .     -.....++    ..+.+|+.++.||.|
T Consensus       286 ~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~---------~-----~~~~~sp~----v~~g~l~v~~~~G~l  347 (394)
T PRK11138        286 SVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDL---------L-----HRLLTAPV----LYNGYLVVGDSEGYL  347 (394)
T ss_pred             CccCcEEECCEEEEEcCCCeEEEEECCCCcEEEccccc---------C-----CCcccCCE----EECCEEEEEeCCCEE
Confidence            22234556788888999999999999876432211000         0     00011111    236688889999999


Q ss_pred             EEEeCCchHhHH
Q 009993          446 RIWNFSQAFEIE  457 (520)
Q Consensus       446 ~iwd~~~~~~~~  457 (520)
                      ++.|..+++.+.
T Consensus       348 ~~ld~~tG~~~~  359 (394)
T PRK11138        348 HWINREDGRFVA  359 (394)
T ss_pred             EEEECCCCCEEE
Confidence            999998886543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.16  E-value=3.8e-08  Score=97.25  Aligned_cols=205  Identities=13%  Similarity=0.019  Sum_probs=123.7

Q ss_pred             CeEEEEECCCCcEEEEeCCCCc--eEEEEecCCCEEEEEeC---CCcEEEEEcccCcceeeeccCCccccceEEeccCCC
Q 009993          164 SIVRMWHLEDGFSIASSKPLGC--TIRAVAADKKLLVAGGT---DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEG  238 (520)
Q Consensus       164 g~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~l~sg~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~  238 (520)
                      ..|.+||.+...... +..+..  .-..++|||+.|+..+.   +..|.+|++.++...           ....+.+   
T Consensus       179 ~~l~~~d~dg~~~~~-lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-----------~l~~~~~---  243 (429)
T PRK03629        179 YELRVSDYDGYNQFV-VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-----------QVASFPR---  243 (429)
T ss_pred             eeEEEEcCCCCCCEE-eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-----------EccCCCC---
Confidence            368899987554332 222333  33466799998886543   356889998766321           1112222   


Q ss_pred             CeEEEEE--cCCEEEEE-ecCC--eEEEEECCCCcEEEEeeeccCEE--EEeeCCCEEEEEcC--C--eEEEEECCCCee
Q 009993          239 PITSLAL--DLTRIYSG-SWDM--TVRVWDRALLKCLKVLRHSDWVY--GLAPHDTTVASTSG--S--DVYIWDTNSGCL  307 (520)
Q Consensus       239 ~v~~l~~--~~~~l~s~-s~dg--~v~iwd~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~d--~--~i~iwd~~~~~~  307 (520)
                      .+....|  |++.|+.. +.+|  .|.+||+.+++......+...+.  .++|+++.|+..++  +  .|+++|+.++..
T Consensus       244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~  323 (429)
T PRK03629        244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP  323 (429)
T ss_pred             CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence            3345667  77777654 4444  58899999887655544333333  34589998877662  3  466667777654


Q ss_pred             eEEeecccccceEEEEecCCCCEEEEEeCC---CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeC
Q 009993          308 LTVVNGAHVGNTKSLARSHTGDFLFTGGED---GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG  382 (520)
Q Consensus       308 ~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~  382 (520)
                      .. +. .+........|+|+|++|+..+.+   ..|.+||+.++..       ..+... .......|+|  .+|+.++.
T Consensus       324 ~~-lt-~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-------~~Lt~~-~~~~~p~~SpDG~~i~~~s~  393 (429)
T PRK03629        324 QR-IT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-------QVLTDT-FLDETPSIAPNGTMVIYSSS  393 (429)
T ss_pred             EE-ee-cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-------EEeCCC-CCCCCceECCCCCEEEEEEc
Confidence            33 32 233445678899999998876543   3588899877731       112111 1223456755  68888887


Q ss_pred             CCc---EEEEeCCc
Q 009993          383 DGK---LSLIDVRK  393 (520)
Q Consensus       383 dg~---i~vwd~~~  393 (520)
                      ++.   +.++++..
T Consensus       394 ~~~~~~l~~~~~~G  407 (429)
T PRK03629        394 QGMGSVLNLVSTDG  407 (429)
T ss_pred             CCCceEEEEEECCC
Confidence            764   66667643

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=2.7e-08  Score=98.82  Aligned_cols=207  Identities=11%  Similarity=0.039  Sum_probs=127.6

Q ss_pred             cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec---CCeEEEEECCCCcEEEEeeeccCE
Q 009993          205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW---DMTVRVWDRALLKCLKVLRHSDWV  279 (520)
Q Consensus       205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~v  279 (520)
                      .|.++|....              ....+..|...+.+..|  |++.|+..+.   +..|.+||+.+++......+...+
T Consensus       183 ~l~~~d~dg~--------------~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~  248 (435)
T PRK05137        183 RLAIMDQDGA--------------NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMT  248 (435)
T ss_pred             EEEEECCCCC--------------CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcc
Confidence            6777776433              23345567888999999  7788877664   468999999988765443344444


Q ss_pred             E--EEeeCCCEEEEE-c-CC--eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC-CC--eEEEEEcccCcc
Q 009993          280 Y--GLAPHDTTVAST-S-GS--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DG--AIHMYEIINDCT  350 (520)
Q Consensus       280 ~--~~~~~~~~l~~~-~-d~--~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~-dg--~i~iwd~~~~~~  350 (520)
                      .  .++|+|+.++.. + ++  .|++||+.++.... +. .+........|+|||+.|+..+. +|  .|+++|+.++. 
T Consensus       249 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt-~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~-  325 (435)
T PRK05137        249 FAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LT-DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN-  325 (435)
T ss_pred             cCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE-cc-CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC-
Confidence            3  355899877643 3 44  48888998876543 33 35555677899999998887664 33  57788876552 


Q ss_pred             ccceeeeeeecCCcCCEEEEEecC--CEEEEEeCC---CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCccee
Q 009993          351 EANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD---GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN  425 (520)
Q Consensus       351 ~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (520)
                            ...+..+.+.+....|+|  +.|+..+.+   ..|.+||+.+....                   ....+....
T Consensus       326 ------~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-------------------~lt~~~~~~  380 (435)
T PRK05137        326 ------PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-------------------ILTSGFLVE  380 (435)
T ss_pred             ------eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-------------------eccCCCCCC
Confidence                  222323344556677866  577665543   35788887542110                   000111223


Q ss_pred             eEEEEecCCEEEEecC-C-----CeEEEEeCCch
Q 009993          426 LLSVDIGADRIVCGGE-E-----GIVRIWNFSQA  453 (520)
Q Consensus       426 v~~~~~~~~~l~sg~~-D-----g~v~iwd~~~~  453 (520)
                      ...++++++.|+..+. .     ..+.++|+..+
T Consensus       381 ~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        381 GPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             CCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence            3467788886655433 2     25777777543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.14  E-value=2.1e-08  Score=87.31  Aligned_cols=261  Identities=14%  Similarity=0.092  Sum_probs=155.3

Q ss_pred             CCeEEEEECCCCcEEE--EeC--CC-CceEEEEe---cCCC-EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEe
Q 009993          163 DSIVRMWHLEDGFSIA--SSK--PL-GCTIRAVA---ADKK-LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL  233 (520)
Q Consensus       163 dg~v~vwd~~~~~~~~--~~~--~~-~~~v~~~~---~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  233 (520)
                      .|.+.++++...+...  +++  .| .....-+.   .++. .++-+..+|.|.++.........          ....+
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~----------~L~~l  114 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV----------HLRGL  114 (339)
T ss_pred             ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeee----------eeccc
Confidence            4567788876654332  111  11 11111122   3444 56667778888888764432111          00111


Q ss_pred             ccCCC---CeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEE--Eee-ecc--CEEEEe-eCCCEEEEEc-CCeEEEEE
Q 009993          234 WEHEG---PITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLK--VLR-HSD--WVYGLA-PHDTTVASTS-GSDVYIWD  301 (520)
Q Consensus       234 ~~h~~---~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~--~~~-~~~--~v~~~~-~~~~~l~~~~-d~~i~iwd  301 (520)
                      ..-.-   ...++.|  .+..++++-.+|.+.+-+........  ..+ |.-  ++..+. .+++++++|+ |+.+..||
T Consensus       115 s~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D  194 (339)
T KOG0280|consen  115 SSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWD  194 (339)
T ss_pred             chhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEE
Confidence            11111   1234445  55678888889998866655444333  333 444  444444 6678999999 89999999


Q ss_pred             CC-CCeeeEEeecccccceEEEEecC-CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCC---E
Q 009993          302 TN-SGCLLTVVNGAHVGNTKSLARSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP---W  376 (520)
Q Consensus       302 ~~-~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~  376 (520)
                      ++ .++.+..-...|...|.++.-+| .+.+++||+.|-.|++||.++..     +++..- .-.+.|..+.++|.   .
T Consensus       195 ~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~-----kPl~~~-~v~GGVWRi~~~p~~~~~  268 (339)
T KOG0280|consen  195 IRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG-----KPLFKA-KVGGGVWRIKHHPEIFHR  268 (339)
T ss_pred             ecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc-----CccccC-ccccceEEEEecchhhhH
Confidence            99 44444443335888899998776 57799999999999999999653     222221 22378999999883   3


Q ss_pred             EEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEEec-CCCeEE-EEeCCc
Q 009993          377 LVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGG-EEGIVR-IWNFSQ  452 (520)
Q Consensus       377 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~-~Dg~v~-iwd~~~  452 (520)
                      |+.+..-.-.+|-+.......              +.........|.+-++.-+|+..  .|+|++ .|..++ +|-.-+
T Consensus       269 lL~~CMh~G~ki~~~~~~~~e--------------~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t  334 (339)
T KOG0280|consen  269 LLAACMHNGAKILDSSDKVLE--------------FQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT  334 (339)
T ss_pred             HHHHHHhcCceEEEecccccc--------------hheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence            344444444777777654211              12223345567776776666544  678765 577755 786554


Q ss_pred             h
Q 009993          453 A  453 (520)
Q Consensus       453 ~  453 (520)
                      +
T Consensus       335 ~  335 (339)
T KOG0280|consen  335 G  335 (339)
T ss_pred             C
Confidence            4

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.12  E-value=3.5e-10  Score=119.51  Aligned_cols=219  Identities=16%  Similarity=0.211  Sum_probs=160.9

Q ss_pred             hccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCC-ceEEE--EecCCCEEEEEeCCCcEEEEEcccC
Q 009993          138 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-CTIRA--VAADKKLLVAGGTDGFIHCWRAVEV  214 (520)
Q Consensus       138 l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~-~~v~~--~~~~~~~l~sg~~dg~i~vwd~~~~  214 (520)
                      ++.|-..|.++.=+|...+.+||+.||.|++|....+..+..+...+ ..|..  ++..|+.+..+..||.+.+|.+.  
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-- 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-- 2281 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC--
Confidence            45567888999889999999999999999999999998887775322 33433  45789999999999999999874  


Q ss_pred             cceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEe---cCCeEEEEECCCC---cEEEEeeeccCEEEEe--eCC
Q 009993          215 LPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS---WDMTVRVWDRALL---KCLKVLRHSDWVYGLA--PHD  286 (520)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s---~dg~v~iwd~~~~---~~~~~~~~~~~v~~~~--~~~  286 (520)
                                  .........|.....++.|-+..+++++   .++.+.+||.--.   .++. .-|...++++.  |..
T Consensus      2282 ------------pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~ 2348 (2439)
T KOG1064|consen 2282 ------------PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKH 2348 (2439)
T ss_pred             ------------CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcc
Confidence                        2355667789999999999667777764   5689999996532   2333 33777788777  899


Q ss_pred             CEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcC
Q 009993          287 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG  365 (520)
Q Consensus       287 ~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  365 (520)
                      .++++|+ +|.|++||++..+....+..          +. ...++++|+..|.|+||++.............   .|.+
T Consensus      2349 qllisggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~---ak~g 2414 (2439)
T KOG1064|consen 2349 QLLISGGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH---AKQG 2414 (2439)
T ss_pred             eEEEecCCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCchhh---cccc
Confidence            9999999 99999999998877665541          33 56789999999999999998873322111111   1111


Q ss_pred             C--E--EEEEec-CCEEEEEeCCCc
Q 009993          366 P--V--NSLAFE-FPWLVSAAGDGK  385 (520)
Q Consensus       366 ~--v--~~l~~~-~~~l~s~s~dg~  385 (520)
                      -  +  ..+... .++|.+++.||+
T Consensus      2415 fFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2415 FFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred             hhhhcCceeeeccCceEEEecCCCC
Confidence            1  1  222222 268888888874

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.11  E-value=3.5e-09  Score=93.94  Aligned_cols=240  Identities=19%  Similarity=0.250  Sum_probs=155.3

Q ss_pred             EEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEE
Q 009993          177 IASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYS  252 (520)
Q Consensus       177 ~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s  252 (520)
                      +..+++|...+.+..  |...-+++.+.|.++++|--.+...         ..  .........+++++.+  +...|+.
T Consensus        17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q---------~w--psI~~~mP~~~~~~~y~~e~~~L~v   85 (404)
T KOG1409|consen   17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQ---------YW--PSIYHYMPSPCSAMEYVSESRRLYV   85 (404)
T ss_pred             hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccc---------cC--chhhhhCCCCceEeeeeccceEEEE
Confidence            345667776666544  7778899999999999996443211         01  1111123567788888  4567888


Q ss_pred             EecCCeEEEEECCC----CcEEEEe-eeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEe
Q 009993          253 GSWDMTVRVWDRAL----LKCLKVL-RHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLAR  324 (520)
Q Consensus       253 ~s~dg~v~iwd~~~----~~~~~~~-~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~  324 (520)
                      |-..|++.-+.+..    ...++.. .|...+..+-  .....+++++ |..+.---.+.+..+..+.  .....+++.+
T Consensus        86 g~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~--~~~~~t~~~~  163 (404)
T KOG1409|consen   86 GQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN--FETPASALQF  163 (404)
T ss_pred             EEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE--eeccCCCCce
Confidence            88999998886542    2222222 2778887765  4456677766 6655444444444332221  1111112222


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCC
Q 009993          325 SHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTS  402 (520)
Q Consensus       325 s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~  402 (520)
                      .-  .+...|...|.|.+-.+.....    .++.++.+|.+.++++.|++  ..|++|..|..+.+||+...        
T Consensus       164 d~--~~~fvGd~~gqvt~lr~~~~~~----~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~--------  229 (404)
T KOG1409|consen  164 DA--LYAFVGDHSGQITMLKLEQNGC----QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR--------  229 (404)
T ss_pred             ee--EEEEecccccceEEEEEeecCC----ceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC--------
Confidence            11  1556677777777766554422    67889999999999999986  69999999999999999753        


Q ss_pred             CCceeeeeecCCCcccccCcceeeEEEEecC--CEEEEecCCCeEEEEeCCch
Q 009993          403 GKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~v~iwd~~~~  453 (520)
                                ......+.+|...|.++..-.  ..+++++.||.|.+|+....
T Consensus       230 ----------~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  230 ----------KGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             ----------cceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence                      222333556666666655433  48999999999999998754

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.10  E-value=2.3e-08  Score=99.35  Aligned_cols=195  Identities=14%  Similarity=0.061  Sum_probs=123.4

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCC---CeEEEEECCCCcEEEEeCCC-CceEEEEecCCCEEEE-EeCCC--cEE
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYD---SIVRMWHLEDGFSIASSKPL-GCTIRAVAADKKLLVA-GGTDG--FIH  207 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~d---g~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~s-g~~dg--~i~  207 (520)
                      .+.+..+...+...+|+|||++|+.++.+   ..|.+||+.+++........ .....+++|+++.|+. .+.++  .|.
T Consensus       182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~  261 (417)
T TIGR02800       182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY  261 (417)
T ss_pred             CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence            44556677789999999999999987654   47999999988654322211 1223467799987764 44444  588


Q ss_pred             EEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecC-C--eEEEEECCCCcEEEEeeeccCEE--
Q 009993          208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD-M--TVRVWDRALLKCLKVLRHSDWVY--  280 (520)
Q Consensus       208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d-g--~v~iwd~~~~~~~~~~~~~~~v~--  280 (520)
                      +||+.++.              ...+..+........|  +++.|+..+.. +  .|.++|+.+++......+...+.  
T Consensus       262 ~~d~~~~~--------------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~  327 (417)
T TIGR02800       262 VMDLDGKQ--------------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASP  327 (417)
T ss_pred             EEECCCCC--------------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCe
Confidence            88876652              1222233333444566  77777766543 3  68888888776543333333333  


Q ss_pred             EEeeCCCEEEEEc-CC---eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCC---eEEEEEcc
Q 009993          281 GLAPHDTTVASTS-GS---DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG---AIHMYEII  346 (520)
Q Consensus       281 ~~~~~~~~l~~~~-d~---~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg---~i~iwd~~  346 (520)
                      .+++++++++.+. ++   .|.+||+.++.... +.  .........|+|+|+.|+..+.++   .+++.+..
T Consensus       328 ~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~--~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       328 SWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LT--DTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             EECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-cc--CCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence            4558899888877 54   79999998865432 22  112334568999999888776654   35555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.10  E-value=7.8e-08  Score=94.33  Aligned_cols=261  Identities=11%  Similarity=0.069  Sum_probs=156.4

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEE
Q 009993          153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR  232 (520)
Q Consensus       153 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  232 (520)
                      ++..++.++.++.+..+|.++|+.+.+.........+-...+..++.++.+|.+..+|..+|+. .+......   ....
T Consensus       119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~-~W~~~~~~---~~~~  194 (394)
T PRK11138        119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAV-KWTVNLDV---PSLT  194 (394)
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCE-eeeecCCC---Cccc
Confidence            3566778889999999999999988776543321111112356677788899999999988853 22111100   0001


Q ss_pred             eccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeeccC--------EE----EEeeCCCEEEEEc-CCeEEE
Q 009993          233 LWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDW--------VY----GLAPHDTTVASTS-GSDVYI  299 (520)
Q Consensus       233 ~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~--------v~----~~~~~~~~l~~~~-d~~i~i  299 (520)
                      ..+...++    ..++.++.++.+|.+..+|..+++.+.......+        ..    +-...+..+++++ ++.+..
T Consensus       195 ~~~~~sP~----v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~a  270 (394)
T PRK11138        195 LRGESAPA----TAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVA  270 (394)
T ss_pred             ccCCCCCE----EECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEE
Confidence            11111222    2345677788899999999999987665431110        00    1111234444444 999999


Q ss_pred             EECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecC-CcCCEEEEEecCCEEE
Q 009993          300 WDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP-HTGPVNSLAFEFPWLV  378 (520)
Q Consensus       300 wd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~l~  378 (520)
                      +|..+|+.+.....+.   ...+.  ..+..++.++.+|.+..+|..++.      .+..... ......+....+.+|+
T Consensus       271 ld~~tG~~~W~~~~~~---~~~~~--~~~~~vy~~~~~g~l~ald~~tG~------~~W~~~~~~~~~~~sp~v~~g~l~  339 (394)
T PRK11138        271 LDLRSGQIVWKREYGS---VNDFA--VDGGRIYLVDQNDRVYALDTRGGV------ELWSQSDLLHRLLTAPVLYNGYLV  339 (394)
T ss_pred             EECCCCCEEEeecCCC---ccCcE--EECCEEEEEcCCCeEEEEECCCCc------EEEcccccCCCcccCCEEECCEEE
Confidence            9999998877654221   11222  246778888899999999998883      2222111 0111223334567889


Q ss_pred             EEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeC
Q 009993          379 SAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNF  450 (520)
Q Consensus       379 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~  450 (520)
                      .++.||.|.+.|..++....+..                 +.+.. ........++.|+.++.||.|+.++.
T Consensus       340 v~~~~G~l~~ld~~tG~~~~~~~-----------------~~~~~-~~s~P~~~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        340 VGDSEGYLHWINREDGRFVAQQK-----------------VDSSG-FLSEPVVADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             EEeCCCEEEEEECCCCCEEEEEE-----------------cCCCc-ceeCCEEECCEEEEEeCCceEEEEeC
Confidence            99999999999988753221100                 00000 01111123568889999999988764

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.08  E-value=9.7e-08  Score=84.45  Aligned_cols=264  Identities=16%  Similarity=0.131  Sum_probs=156.7

Q ss_pred             cccEEEEEEccCCCEEE-EEeCCCeEEEEECCCCcEEEEeCCCCceEE--EEecCCC-EEEEEeCCCcEEEEEcccCcce
Q 009993          142 TEAVLTVFVLASAKLLF-TSGYDSIVRMWHLEDGFSIASSKPLGCTIR--AVAADKK-LLVAGGTDGFIHCWRAVEVLPH  217 (520)
Q Consensus       142 ~~~V~~l~~~~~~~~l~-sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~  217 (520)
                      -+.|.-+.|..|..+++ ..+.|+.|.+|++...+-...+......+.  +++|+|+ .|.+...|-.|.||.+.+....
T Consensus        48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~  127 (447)
T KOG4497|consen   48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY  127 (447)
T ss_pred             HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence            45677788887766554 557789999999988877777765544444  5569995 5667777899999998775322


Q ss_pred             eeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec------------------------------------CCeE
Q 009993          218 LFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW------------------------------------DMTV  259 (520)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~------------------------------------dg~v  259 (520)
                      ..              .-.+..+..++|  +|++.+.++.                                    +..+
T Consensus       128 ~~--------------~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~l  193 (447)
T KOG4497|consen  128 LL--------------PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWL  193 (447)
T ss_pred             Ee--------------cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEE
Confidence            11              111222233333  3333322221                                    1233


Q ss_pred             EEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeee----------------------------
Q 009993          260 RVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLL----------------------------  308 (520)
Q Consensus       260 ~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~----------------------------  308 (520)
                      .+||.--.-.+..+...-.+..++  |.++++++|+ |+.+++.+--+.+..                            
T Consensus       194 aVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~  273 (447)
T KOG4497|consen  194 AVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLL  273 (447)
T ss_pred             EEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhc
Confidence            344422211222222223344444  6778888888 777766443221110                            


Q ss_pred             --------------------------------EEeec-----ccccceEEEEecCCCCEEEEEeC--CCeEEEEEcccCc
Q 009993          309 --------------------------------TVVNG-----AHVGNTKSLARSHTGDFLFTGGE--DGAIHMYEIINDC  349 (520)
Q Consensus       309 --------------------------------~~~~~-----~~~~~i~~l~~s~~~~~l~tg~~--dg~i~iwd~~~~~  349 (520)
                                                      ..++.     .....+.-++|++|..+++|-.+  -+.+-+||++..+
T Consensus       274 ~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~  353 (447)
T KOG4497|consen  274 HHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK  353 (447)
T ss_pred             ccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh
Confidence                                            00000     01224667899999999988644  3669999998872


Q ss_pred             cccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeE
Q 009993          350 TEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLL  427 (520)
Q Consensus       350 ~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  427 (520)
                            . ...-....+|....|+|  ..|+.+.....+++|..........                  ...|....-.
T Consensus       354 ------l-~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v------------------P~~GF~i~~l  408 (447)
T KOG4497|consen  354 ------L-HAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV------------------PKKGFNIQKL  408 (447)
T ss_pred             ------h-hhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec------------------CCCCceeeeE
Confidence                  2 22223456899999998  4777777777899998876432221                  1234444455


Q ss_pred             EEEecCCEEEEecCCCe
Q 009993          428 SVDIGADRIVCGGEEGI  444 (520)
Q Consensus       428 ~~~~~~~~l~sg~~Dg~  444 (520)
                      .+..+++.++-.+.|..
T Consensus       409 ~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  409 QWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             EecCCCcEEEEEcCCce
Confidence            55566778888888864

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=6.2e-08  Score=96.41  Aligned_cols=215  Identities=15%  Similarity=0.066  Sum_probs=133.1

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCC---CeEEEEECCCCcEEEE--eCCCCceEEEEecCCCEEE-EEeCCC--cE
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYD---SIVRMWHLEDGFSIAS--SKPLGCTIRAVAADKKLLV-AGGTDG--FI  206 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~d---g~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~-sg~~dg--~i  206 (520)
                      .+.+..+...+...+|+|||+.|+..+.+   ..|.+||+.+++....  ..++. ....++|+|+.|+ +.+.+|  .|
T Consensus       191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~-~~~~~SpDG~~la~~~~~~g~~~I  269 (430)
T PRK00178        191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLN-GAPAWSPDGSKLAFVLSKDGNPEI  269 (430)
T ss_pred             ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCc-CCeEECCCCCEEEEEEccCCCceE
Confidence            34556677889999999999998876644   3689999988865432  22222 2356789999877 444555  57


Q ss_pred             EEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec-CC--eEEEEECCCCcEEEEee--eccCE
Q 009993          207 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DM--TVRVWDRALLKCLKVLR--HSDWV  279 (520)
Q Consensus       207 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg--~v~iwd~~~~~~~~~~~--~~~~v  279 (520)
                      .+||+.++.              ...+..+........|  +++.++..+. +|  .|.++|+.+++......  .....
T Consensus       270 y~~d~~~~~--------------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~  335 (430)
T PRK00178        270 YVMDLASRQ--------------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNAR  335 (430)
T ss_pred             EEEECCCCC--------------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccc
Confidence            778887653              1223334444555667  6777665553 33  57778888776543322  11223


Q ss_pred             EEEeeCCCEEEEEc--CC--eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCC-C--eEEEEEcccCcccc
Q 009993          280 YGLAPHDTTVASTS--GS--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-G--AIHMYEIINDCTEA  352 (520)
Q Consensus       280 ~~~~~~~~~l~~~~--d~--~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d-g--~i~iwd~~~~~~~~  352 (520)
                      ..++++++.++...  ++  .|.++|+.+++... +..  ........|+|+|+.++..+.+ |  .|.++++...    
T Consensus       336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----  408 (430)
T PRK00178        336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----  408 (430)
T ss_pred             eEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----
Confidence            35669999988766  33  58899998876533 321  1222356899999988766543 3  4666666443    


Q ss_pred             ceeeeeeecCCcCCEEEEEecC
Q 009993          353 NVLLVATWIPHTGPVNSLAFEF  374 (520)
Q Consensus       353 ~~~~~~~~~~h~~~v~~l~~~~  374 (520)
                         ....+..+.+.+...+|+|
T Consensus       409 ---~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        409 ---VRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             ---ceEECcCCCCCcCCCccCC
Confidence               2223333445566666665

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=4e-08  Score=97.46  Aligned_cols=205  Identities=15%  Similarity=0.061  Sum_probs=125.8

Q ss_pred             CeEEEEECCCCcEEEEeCCCCceEE--EEecCCCEEEEEeCC---CcEEEEEcccCcceeeeccCCccccceEEeccCCC
Q 009993          164 SIVRMWHLEDGFSIASSKPLGCTIR--AVAADKKLLVAGGTD---GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEG  238 (520)
Q Consensus       164 g~v~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~  238 (520)
                      ..|.+||.... ....+..+...+.  .++|+++.|+..+.+   ..|.+||+.++..              ..+..+.+
T Consensus       184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--------------~~l~~~~g  248 (433)
T PRK04922        184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--------------ELVASFRG  248 (433)
T ss_pred             EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--------------EEeccCCC
Confidence            46899998644 3344444444454  456999999887743   4699999876632              12222333


Q ss_pred             CeEEEEE--cCCEEE-EEecCC--eEEEEECCCCcEEEEeeeccCE--EEEeeCCCEEEEEc--CCe--EEEEECCCCee
Q 009993          239 PITSLAL--DLTRIY-SGSWDM--TVRVWDRALLKCLKVLRHSDWV--YGLAPHDTTVASTS--GSD--VYIWDTNSGCL  307 (520)
Q Consensus       239 ~v~~l~~--~~~~l~-s~s~dg--~v~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~--d~~--i~iwd~~~~~~  307 (520)
                      ...+..|  +++.++ +.+.+|  .|++||+.+++......+....  .+++++++.++.++  ++.  |+++|+.+++.
T Consensus       249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~  328 (433)
T PRK04922        249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA  328 (433)
T ss_pred             CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence            4446677  677664 555555  5999999988765433333322  34568999888776  343  77778877764


Q ss_pred             eEEeecccccceEEEEecCCCCEEEEEeCCC---eEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeC
Q 009993          308 LTVVNGAHVGNTKSLARSHTGDFLFTGGEDG---AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG  382 (520)
Q Consensus       308 ~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg---~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~  382 (520)
                      .....  +.......+|+|+|++|+..+.++   .|.+||+.++.      .. .+. +........|+|  ++|+..+.
T Consensus       329 ~~lt~--~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~------~~-~Lt-~~~~~~~p~~spdG~~i~~~s~  398 (433)
T PRK04922        329 ERLTF--QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS------VR-TLT-PGSLDESPSFAPNGSMVLYATR  398 (433)
T ss_pred             EEeec--CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC------eE-ECC-CCCCCCCceECCCCCEEEEEEe
Confidence            33322  233445689999999988765443   59999987763      22 222 222334567765  56665554


Q ss_pred             C---CcEEEEeCCc
Q 009993          383 D---GKLSLIDVRK  393 (520)
Q Consensus       383 d---g~i~vwd~~~  393 (520)
                      +   +.|.++++..
T Consensus       399 ~~g~~~L~~~~~~g  412 (433)
T PRK04922        399 EGGRGVLAAVSTDG  412 (433)
T ss_pred             cCCceEEEEEECCC
Confidence            2   3577777753

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.07  E-value=6.1e-09  Score=90.44  Aligned_cols=117  Identities=18%  Similarity=0.289  Sum_probs=83.8

Q ss_pred             eeEEeecccccceEEEEecCCCCEEEE--EeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeC
Q 009993          307 LLTVVNGAHVGNTKSLARSHTGDFLFT--GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG  382 (520)
Q Consensus       307 ~~~~~~~~~~~~i~~l~~s~~~~~l~t--g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~  382 (520)
                      ....+.....++|.+++|+|+|+.+++  |..++.|.+||++ .      ..+..+.  ...++.+.|+|  ++|++|+.
T Consensus        50 ~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~------~~i~~~~--~~~~n~i~wsP~G~~l~~~g~  120 (194)
T PF08662_consen   50 PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-G------KKIFSFG--TQPRNTISWSPDGRFLVLAGF  120 (194)
T ss_pred             ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-c------cEeEeec--CCCceEEEECCCCCEEEEEEc
Confidence            344443335567999999999998755  4467899999996 3      3555553  46788999987  68888774


Q ss_pred             ---CCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecC------CCeEEEEeCC
Q 009993          383 ---DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGE------EGIVRIWNFS  451 (520)
Q Consensus       383 ---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~------Dg~v~iwd~~  451 (520)
                         .|.|.+||+++....                   ...........+++|+|++|++++.      |..++||++.
T Consensus       121 ~n~~G~l~~wd~~~~~~i-------------------~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  121 GNLNGDLEFWDVRKKKKI-------------------STFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             cCCCcEEEEEECCCCEEe-------------------eccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence               467999999864222                   2223334566778888888888774      7889999986

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.06  E-value=3.4e-08  Score=85.77  Aligned_cols=108  Identities=19%  Similarity=0.333  Sum_probs=83.0

Q ss_pred             CCCCeEEEEE--cCCEEEE--EecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc-C---CeEEEEECCCC
Q 009993          236 HEGPITSLAL--DLTRIYS--GSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-G---SDVYIWDTNSG  305 (520)
Q Consensus       236 h~~~v~~l~~--~~~~l~s--~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d---~~i~iwd~~~~  305 (520)
                      ..++|.+++|  +++.+++  |..++.|.+||++ ++.+..+. ...++.+.  |+|+++++++ +   |.|.+||.++.
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~  135 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK  135 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            3457999999  5566544  4567899999996 66666664 34445554  9999999986 3   67999999998


Q ss_pred             eeeEEeecccccceEEEEecCCCCEEEEEeC------CCeEEEEEcccC
Q 009993          306 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGE------DGAIHMYEIIND  348 (520)
Q Consensus       306 ~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~------dg~i~iwd~~~~  348 (520)
                      +.+....  |. .++.++|+|+|++|+++..      |+.++||+....
T Consensus       136 ~~i~~~~--~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  136 KKISTFE--HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             EEeeccc--cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence            8887764  43 4789999999999998764      788999998644

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.06  E-value=8.7e-07  Score=83.10  Aligned_cols=272  Identities=14%  Similarity=0.060  Sum_probs=154.6

Q ss_pred             CeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeC----------CCcEEEEEcccCcceeeeccCCccccceEEe
Q 009993          164 SIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGT----------DGFIHCWRAVEVLPHLFDISGSEKQNTQFRL  233 (520)
Q Consensus       164 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  233 (520)
                      ++|.+.|..+++.+..+..-..+-..++++++.|+++..          +..|.+||..+.....--..+..+    .-.
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p----~~~  102 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP----RFL  102 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc----hhh
Confidence            899999999999888876432222238999998887766          789999999887421100000000    000


Q ss_pred             ccCCCCeEEEEEcCCEEEEEe-c-CCeEEEEECCCCcEEEEeeeccCEEEEe-eCCCEEEEEcCCeEEEEECCC-Ceee-
Q 009993          234 WEHEGPITSLALDLTRIYSGS-W-DMTVRVWDRALLKCLKVLRHSDWVYGLA-PHDTTVASTSGSDVYIWDTNS-GCLL-  308 (520)
Q Consensus       234 ~~h~~~v~~l~~~~~~l~s~s-~-dg~v~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~d~~i~iwd~~~-~~~~-  308 (520)
                      .+-......+.-||++++... . +..|-+.|+.+++.+..+.-++...-+. .+...++.+.||......+.+ |+.. 
T Consensus       103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~  182 (352)
T TIGR02658       103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKI  182 (352)
T ss_pred             ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEE
Confidence            011122334444888888765 3 6899999999999999887433222222 333333444454444333222 2211 


Q ss_pred             EEeecccc--cce-EEEEecC-CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecC-------CcCCEEEEEecC--C
Q 009993          309 TVVNGAHV--GNT-KSLARSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP-------HTGPVNSLAFEF--P  375 (520)
Q Consensus       309 ~~~~~~~~--~~i-~~l~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~~--~  375 (520)
                      ....--+.  .++ ..-.|.+ +|.++++..+ |+|.+.|+........ .....+..       ..+.+.-+++++  +
T Consensus       183 ~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~-~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~  260 (352)
T TIGR02658       183 KPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL-PAIEAFTEAEKADGWRPGGWQQVAYHRARD  260 (352)
T ss_pred             eeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec-ceeeeccccccccccCCCcceeEEEcCCCC
Confidence            11000011  000 0003455 8888888777 9999999755432111 12221111       223344478864  5


Q ss_pred             EEEEEe----------CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-EEEEec-CCC
Q 009993          376 WLVSAA----------GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGG-EEG  443 (520)
Q Consensus       376 ~l~s~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~-~Dg  443 (520)
                      .++...          ..+.|.++|..+.....                  +..-++...-..++++++ +|++.. .++
T Consensus       261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~------------------~i~vG~~~~~iavS~Dgkp~lyvtn~~s~  322 (352)
T TIGR02658       261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR------------------KIELGHEIDSINVSQDAKPLLYALSTGDK  322 (352)
T ss_pred             EEEEEecCCccccccCCCCEEEEEECCCCeEEE------------------EEeCCCceeeEEECCCCCeEEEEeCCCCC
Confidence            555532          12579999998753222                  222345555667778888 666555 688


Q ss_pred             eEEEEeCCchHhHHHH
Q 009993          444 IVRIWNFSQAFEIERR  459 (520)
Q Consensus       444 ~v~iwd~~~~~~~~~~  459 (520)
                      .|.+.|..+++.+++.
T Consensus       323 ~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       323 TLYIFDAETGKELSSV  338 (352)
T ss_pred             cEEEEECcCCeEEeee
Confidence            9999999998777654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=8e-08  Score=90.96  Aligned_cols=265  Identities=14%  Similarity=0.172  Sum_probs=166.3

Q ss_pred             cEEEEEEccCCCEEEEE-----eC-----CCeEEEEECCCCcEEEEeCCC--CceEEEEecCCCEEEEEeCCCcEEEEEc
Q 009993          144 AVLTVFVLASAKLLFTS-----GY-----DSIVRMWHLEDGFSIASSKPL--GCTIRAVAADKKLLVAGGTDGFIHCWRA  211 (520)
Q Consensus       144 ~V~~l~~~~~~~~l~sg-----s~-----dg~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~l~sg~~dg~i~vwd~  211 (520)
                      .++++.|+|-|.+|.|=     ..     ...+++|+++++.....+...  ...+..++.|..+. +--..+.+.+|+.
T Consensus        75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~-arlv~nev~f~~~  153 (566)
T KOG2315|consen   75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLA-ARLVSNEVQFYDL  153 (566)
T ss_pred             eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhh-hhhhcceEEEEec
Confidence            67899999999988762     11     235779999996555544432  22344555555432 2223467888887


Q ss_pred             ccCcceeeeccCCccccceEEeccCCCCeEEEEEcC----CEEEE-----EecCCeEEEEECCCCcEEEEe-----eecc
Q 009993          212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL----TRIYS-----GSWDMTVRVWDRALLKCLKVL-----RHSD  277 (520)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s-----~s~dg~v~iwd~~~~~~~~~~-----~~~~  277 (520)
                      ...            ......+  |...|+.+.+.+    ..+++     .+.-..|++|...-......+     -..+
T Consensus       154 ~~f------------~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkad  219 (566)
T KOG2315|consen  154 GSF------------KTIQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKAD  219 (566)
T ss_pred             CCc------------cceeeee--eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccc
Confidence            552            1122222  567777777733    23332     345568999987522221111     1112


Q ss_pred             CEE-EEeeCCC--EEEEEc--C---------CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEE--EeCCCeEE
Q 009993          278 WVY-GLAPHDT--TVASTS--G---------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT--GGEDGAIH  341 (520)
Q Consensus       278 ~v~-~~~~~~~--~l~~~~--d---------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~t--g~~dg~i~  341 (520)
                      .|. .....+.  ++++.+  |         .++++.++........+  ...++|.++.|+|++.-+++  |-.-.++.
T Consensus       220 kvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkvt  297 (566)
T KOG2315|consen  220 KVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL--LKEGPVHDVTWSPSGREFAVVYGFMPAKVT  297 (566)
T ss_pred             eeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec--CCCCCceEEEECCCCCEEEEEEecccceEE
Confidence            221 1112222  222222  3         35888888855555554  36899999999999986554  67788999


Q ss_pred             EEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeC---CCcEEEEeCCcccccCCCCCCCceeeeeecCCCc
Q 009993          342 MYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG---DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQ  416 (520)
Q Consensus       342 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (520)
                      |||++..       ++..+  ..++-+++-|+|  ++|+.+|-   -|.|-|||+.+..                   ..
T Consensus       298 ifnlr~~-------~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K-------------------~i  349 (566)
T KOG2315|consen  298 IFNLRGK-------PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK-------------------LI  349 (566)
T ss_pred             EEcCCCC-------EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh-------------------hc
Confidence            9999766       33333  456778899987  56666554   4899999998832                   33


Q ss_pred             ccccCcceeeEEEEecCCEEEEecC------CCeEEEEeCCch
Q 009993          417 RMLHGFECNLLSVDIGADRIVCGGE------EGIVRIWNFSQA  453 (520)
Q Consensus       417 ~~~~~~~~~v~~~~~~~~~l~sg~~------Dg~v~iwd~~~~  453 (520)
                      ..+......+..++++|.+++|+..      |..++||++.-.
T Consensus       350 ~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  350 AKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             cccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence            3345566788999999998887774      678999998744

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=2.5e-07  Score=87.47  Aligned_cols=315  Identities=14%  Similarity=0.087  Sum_probs=192.6

Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeC-----------CCcEEEEEcccC
Q 009993          146 LTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGT-----------DGFIHCWRAVEV  214 (520)
Q Consensus       146 ~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~-----------dg~i~vwd~~~~  214 (520)
                      +-+.|||-|.||+|--.-| |.+|--++-..++.+......-..++|+.++|+|-+.           ...+.|||+.+|
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG  292 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG  292 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence            5678999999999988766 9999877777777777667777889999999998653           256899999998


Q ss_pred             cceeeeccCCccccceEEeccC--CCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEE
Q 009993          215 LPHLFDISGSEKQNTQFRLWEH--EGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTV  289 (520)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l  289 (520)
                      ...          .....+.+.  .-++.--++|+++++--.. .+|.||+..+..++-.-. ....|..++  |.+++|
T Consensus       293 ~lk----------rsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~ll  361 (698)
T KOG2314|consen  293 LLK----------RSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLL  361 (698)
T ss_pred             chh----------cceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceE
Confidence            521          011111111  1122222337788877666 578999987644432222 233444444  777777


Q ss_pred             EEEc-C-----CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEe----------CCCeEEEEEcccCccccc
Q 009993          290 ASTS-G-----SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG----------EDGAIHMYEIINDCTEAN  353 (520)
Q Consensus       290 ~~~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~----------~dg~i~iwd~~~~~~~~~  353 (520)
                      |--. .     ..+.+-.+.+++.++.... +.-.=..+.|-.+|++|+.--          .=..+-|+.++....   
T Consensus       362 AYwtpe~~~~parvtL~evPs~~~iRt~nl-fnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI---  437 (698)
T KOG2314|consen  362 AYWTPETNNIPARVTLMEVPSKREIRTKNL-FNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI---  437 (698)
T ss_pred             EEEcccccCCcceEEEEecCccceeeeccc-eeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC---
Confidence            6544 1     3477777777776665542 332333566777888877521          112356677666532   


Q ss_pred             eeeeeeecCCcCCEEEEEecC--CEEEEEeC---CCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEE
Q 009993          354 VLLVATWIPHTGPVNSLAFEF--PWLVSAAG---DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLS  428 (520)
Q Consensus       354 ~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  428 (520)
                        ++... .-...|...+|.|  +.+++-+.   ..++.+|.+.+....               ......+......-..
T Consensus       438 --pve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~---------------~~lVk~~dk~~~N~vf  499 (698)
T KOG2314|consen  438 --PVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK---------------PSLVKELDKKFANTVF  499 (698)
T ss_pred             --Cceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc---------------hhhhhhhcccccceEE
Confidence              22222 2345788889976  44443332   467889988752111               1222333444455667


Q ss_pred             EEecCCEEEEe---cCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccccccccCCCCCCc
Q 009993          429 VDIGADRIVCG---GEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNR  504 (520)
Q Consensus       429 ~~~~~~~l~sg---~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~~~~~~~~~~~  504 (520)
                      ++|.|.+++.+   |..|.+.++|..............          -.-+.+.|.|.|++..++|.-.+.-..+|.+
T Consensus       500 wsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh----------~~at~veWDPtGRYvvT~ss~wrhk~d~GYr  568 (698)
T KOG2314|consen  500 WSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH----------FAATEVEWDPTGRYVVTSSSSWRHKVDNGYR  568 (698)
T ss_pred             EcCCCcEEEEEEecccccceEEEecchhhhhhccCccc----------cccccceECCCCCEEEEeeehhhhccccceE
Confidence            77777766554   457899999998532221111111          1236789999999999988766655554444

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.05  E-value=3.9e-07  Score=82.84  Aligned_cols=211  Identities=16%  Similarity=0.112  Sum_probs=138.6

Q ss_pred             CCeEEEEECCCCcEEEEeCC---CCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCC
Q 009993          163 DSIVRMWHLEDGFSIASSKP---LGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGP  239 (520)
Q Consensus       163 dg~v~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  239 (520)
                      +|+|..||..+|+.+....-   ....+....+++..+++++.++.|..||..+|... +          ...+.+....
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~-W----------~~~~~~~~~~   70 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVL-W----------RFDLPGPISG   70 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEE-E----------EEECSSCGGS
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEE-E----------Eeeccccccc
Confidence            68999999999999887743   33333223457778888899999999999888521 1          1111111111


Q ss_pred             eEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEe-eec---c---CEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEe
Q 009993          240 ITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVL-RHS---D---WVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVV  311 (520)
Q Consensus       240 v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~---~---~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~  311 (520)
                      .  ...+++.++.++.|+.+..+|..+|+.+... ...   .   ........+..++++. ++.|..+|+++|+.+...
T Consensus        71 ~--~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~  148 (238)
T PF13360_consen   71 A--PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKY  148 (238)
T ss_dssp             G--EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEE
T ss_pred             e--eeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEe
Confidence            1  3447788888888999999999999998884 321   1   1122334577777777 999999999999998887


Q ss_pred             ecccccc---------eEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEE-EEecCCEEEEEe
Q 009993          312 NGAHVGN---------TKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNS-LAFEFPWLVSAA  381 (520)
Q Consensus       312 ~~~~~~~---------i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~l~s~s  381 (520)
                      .......         +..-....++ .++.++.++.+..+|+.++      ..+....  ...+.. ...+...|+.++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg------~~~w~~~--~~~~~~~~~~~~~~l~~~~  219 (238)
T PF13360_consen  149 PVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATG------EKLWSKP--ISGIYSLPSVDGGTLYVTS  219 (238)
T ss_dssp             ESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTT------EEEEEEC--SS-ECECEECCCTEEEEEE
T ss_pred             ecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCC------CEEEEec--CCCccCCceeeCCEEEEEe
Confidence            6422111         1122222234 7777777886444499998      3332222  223343 555778888888


Q ss_pred             CCCcEEEEeCCccc
Q 009993          382 GDGKLSLIDVRKLL  395 (520)
Q Consensus       382 ~dg~i~vwd~~~~~  395 (520)
                      .++.|..||++++.
T Consensus       220 ~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  220 SDGRLYALDLKTGK  233 (238)
T ss_dssp             TTTEEEEEETTTTE
T ss_pred             CCCEEEEEECCCCC
Confidence            99999999999863

...

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.03  E-value=4e-06  Score=80.52  Aligned_cols=273  Identities=14%  Similarity=0.174  Sum_probs=161.3

Q ss_pred             EEEEeCC----CeEEEEEC--CCCcEE--EEe-CCCCceEEEEecCCCEEEEEeC----CCcEEEEEcccCcceeeeccC
Q 009993          157 LFTSGYD----SIVRMWHL--EDGFSI--ASS-KPLGCTIRAVAADKKLLVAGGT----DGFIHCWRAVEVLPHLFDISG  223 (520)
Q Consensus       157 l~sgs~d----g~v~vwd~--~~~~~~--~~~-~~~~~~v~~~~~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~~  223 (520)
                      ++.|+++    +.|.+|++  ++++..  ... ......-.++++++++|++...    +|.|..|++.....       
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-------   74 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-------   74 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT-------
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc-------
Confidence            4566665    68999888  444332  222 3344555677899999999877    46898888765310       


Q ss_pred             CccccceEEeccCCCCeEEEEE--cCCEEEEEe-cCCeEEEEECCC-CcEEEE---eee-----------ccCEEEE--e
Q 009993          224 SEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRAL-LKCLKV---LRH-----------SDWVYGL--A  283 (520)
Q Consensus       224 ~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~v~iwd~~~-~~~~~~---~~~-----------~~~v~~~--~  283 (520)
                        .................+++  ++++|+++. .+|+|.++++.. +.....   +.+           .....++  .
T Consensus        75 --~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~  152 (345)
T PF10282_consen   75 --TLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS  152 (345)
T ss_dssp             --EEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-
T ss_pred             --eeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC
Confidence              11122223223445556777  778887776 489999999986 433322   211           1223344  4


Q ss_pred             eCCCEEEEEc--CCeEEEEECCCCe--e--eEEeecccccceEEEEecCCCCEEEEEeC-CCeEEEEEcccCc-ccccee
Q 009993          284 PHDTTVASTS--GSDVYIWDTNSGC--L--LTVVNGAHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDC-TEANVL  355 (520)
Q Consensus       284 ~~~~~l~~~~--d~~i~iwd~~~~~--~--~~~~~~~~~~~i~~l~~s~~~~~l~tg~~-dg~i~iwd~~~~~-~~~~~~  355 (520)
                      |+++++++..  ...|.+|++....  .  ...+..........+.|+|+++++++..+ ++.|.+|++.... ......
T Consensus       153 pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~  232 (345)
T PF10282_consen  153 PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQ  232 (345)
T ss_dssp             TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEE
Confidence            8999988877  5789999997654  2  22333345667899999999998876554 7889999998221 111111


Q ss_pred             eeeeecC---CcCCEEEEEecC--CEEEEEe-CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEE
Q 009993          356 LVATWIP---HTGPVNSLAFEF--PWLVSAA-GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSV  429 (520)
Q Consensus       356 ~~~~~~~---h~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  429 (520)
                      .+..+..   .......|.++|  ++|+++. .+++|.+|++....        .....+..+.     ..+....-+.+
T Consensus       233 ~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~--------g~l~~~~~~~-----~~G~~Pr~~~~  299 (345)
T PF10282_consen  233 TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT--------GTLTLVQTVP-----TGGKFPRHFAF  299 (345)
T ss_dssp             EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT--------TTEEEEEEEE-----ESSSSEEEEEE
T ss_pred             EeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC--------CceEEEEEEe-----CCCCCccEEEE
Confidence            1222211   112577888875  5666655 56789999995310        0111111100     12333455667


Q ss_pred             EecCCEEEEec-CCCeEEEEeCC
Q 009993          430 DIGADRIVCGG-EEGIVRIWNFS  451 (520)
Q Consensus       430 ~~~~~~l~sg~-~Dg~v~iwd~~  451 (520)
                      ++++++|+++. .++.|.+|++.
T Consensus       300 s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  300 SPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             -TTSSEEEEEETTTTEEEEEEEE
T ss_pred             eCCCCEEEEEecCCCeEEEEEEe
Confidence            77888666554 77899999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.99  E-value=1.7e-07  Score=93.09  Aligned_cols=213  Identities=14%  Similarity=0.081  Sum_probs=128.8

Q ss_pred             hhccccccEEEEEEccCCCEEEEEeCC---CeEEEEECCCCcEEE--EeCCCCceEEEEecCCCEEEE-EeCCCc--EEE
Q 009993          137 VLYGHTEAVLTVFVLASAKLLFTSGYD---SIVRMWHLEDGFSIA--SSKPLGCTIRAVAADKKLLVA-GGTDGF--IHC  208 (520)
Q Consensus       137 ~l~~h~~~V~~l~~~~~~~~l~sgs~d---g~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s-g~~dg~--i~v  208 (520)
                      .+..+...+.+..|+|||+.|+..+.+   ..|.+||+.+++...  .+.++.. -..++|+|+.|+. .+.+|.  |.+
T Consensus       212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~  290 (448)
T PRK04792        212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLALVLSKDGQPEIYV  290 (448)
T ss_pred             EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEEEEEeCCCCeEEEE
Confidence            344556678889999999988876543   258889998876432  2333322 3467899997764 566665  666


Q ss_pred             EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec-CC--eEEEEECCCCcEEEEeeecc--CEEE
Q 009993          209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DM--TVRVWDRALLKCLKVLRHSD--WVYG  281 (520)
Q Consensus       209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg--~v~iwd~~~~~~~~~~~~~~--~v~~  281 (520)
                      +|+.++.              ...+..+........|  |++.++..+. ++  .|.++|+.+++.........  .-..
T Consensus       291 ~dl~tg~--------------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~  356 (448)
T PRK04792        291 VDIATKA--------------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGS  356 (448)
T ss_pred             EECCCCC--------------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCee
Confidence            7776552              2233334444556677  6777665543 33  56677887776544322211  1235


Q ss_pred             EeeCCCEEEEEc--CC--eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC-CCe--EEEEEcccCccccce
Q 009993          282 LAPHDTTVASTS--GS--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DGA--IHMYEIINDCTEANV  354 (520)
Q Consensus       282 ~~~~~~~l~~~~--d~--~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~-dg~--i~iwd~~~~~~~~~~  354 (520)
                      ++++++.++..+  ++  .|.++|+.+++... +...  .......|+|+|+.|+..+. +|.  +++++....      
T Consensus       357 ~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~--~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~------  427 (448)
T PRK04792        357 ITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST--RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR------  427 (448)
T ss_pred             ECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC------
Confidence            669999887765  33  46778888876432 2211  12224579999998776554 333  666776433      


Q ss_pred             eeeeeecCCcCCEEEEEecC
Q 009993          355 LLVATWIPHTGPVNSLAFEF  374 (520)
Q Consensus       355 ~~~~~~~~h~~~v~~l~~~~  374 (520)
                       ....+..+.+.+...+|+|
T Consensus       428 -~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        428 -FKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             -ceEECcCCCCCcCCCccCC
Confidence             3333444455666667765

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.98  E-value=3.1e-06  Score=79.46  Aligned_cols=224  Identities=11%  Similarity=0.032  Sum_probs=137.1

Q ss_pred             EccCCCEEEEEeC----------CCeEEEEECCCCcEEEEeCCC---------CceEEEEecCCCEEEEEe-C-CCcEEE
Q 009993          150 VLASAKLLFTSGY----------DSIVRMWHLEDGFSIASSKPL---------GCTIRAVAADKKLLVAGG-T-DGFIHC  208 (520)
Q Consensus       150 ~~~~~~~l~sgs~----------dg~v~vwd~~~~~~~~~~~~~---------~~~v~~~~~~~~~l~sg~-~-dg~i~v  208 (520)
                      ++||++.|+.+..          +..|.+||..+++.+..+.-.         ......++++|++|++.. . +..|.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            8999998887755          789999999999999887632         223678889999998776 3 689999


Q ss_pred             EEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCC-CcE-EEEee--e-------cc
Q 009993          209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRAL-LKC-LKVLR--H-------SD  277 (520)
Q Consensus       209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~-~~~-~~~~~--~-------~~  277 (520)
                      .|+.++..             ...+.- .+...-+........+-+.||......+.+ ++. .....  +       ..
T Consensus       133 vD~~~~kv-------------v~ei~v-p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~r  198 (352)
T TIGR02658       133 VDLEGKAF-------------VRMMDV-PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINH  198 (352)
T ss_pred             EECCCCcE-------------EEEEeC-CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccC
Confidence            99987642             111111 111111111111112223334333322221 110 11100  1       11


Q ss_pred             CEEEEe-eCCCEEEEEcCCeEEEEECCCC-----eeeEEeecc------cccceEEEEecCCCCEEEEEe----------
Q 009993          278 WVYGLA-PHDTTVASTSGSDVYIWDTNSG-----CLLTVVNGA------HVGNTKSLARSHTGDFLFTGG----------  335 (520)
Q Consensus       278 ~v~~~~-~~~~~l~~~~d~~i~iwd~~~~-----~~~~~~~~~------~~~~i~~l~~s~~~~~l~tg~----------  335 (520)
                      +  .+. .++++++++..|+|++.|+...     .....+..+      ..+...-++++|+++.+++..          
T Consensus       199 P--~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~  276 (352)
T TIGR02658       199 P--AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKT  276 (352)
T ss_pred             C--ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccC
Confidence            1  223 3888998888999999995433     333322211      233445599999999888743          


Q ss_pred             CCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--C-EEEEEe-CCCcEEEEeCCcccc
Q 009993          336 EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P-WLVSAA-GDGKLSLIDVRKLLR  396 (520)
Q Consensus       336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~s-~dg~i~vwd~~~~~~  396 (520)
                      ..+.|.++|..+.      +.+..+.. ...+..+++++  + +|++.. .++.|.+.|..+...
T Consensus       277 ~~~~V~ViD~~t~------kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~  334 (352)
T TIGR02658       277 ASRFLFVVDAKTG------KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE  334 (352)
T ss_pred             CCCEEEEEECCCC------eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence            1247999999888      55555443 34788999976  4 666555 678899999988543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.97  E-value=9.8e-09  Score=91.14  Aligned_cols=275  Identities=16%  Similarity=0.181  Sum_probs=158.2

Q ss_pred             EEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccC------------CCCeEEEEE----cCCEEEE
Q 009993          189 AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH------------EGPITSLAL----DLTRIYS  252 (520)
Q Consensus       189 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h------------~~~v~~l~~----~~~~l~s  252 (520)
                      .+...|.+|++|..+|.|.++.-.......+        .....+..|            ...|..+.|    +...++.
T Consensus        32 ef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey--------~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   32 EFDHYGERLATGDKGGRVVLFEREKLYKGEY--------NFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             EeecccceEeecCCCCeEEEeecccccccce--------eeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            3457899999999999999986433221011        011112222            356777888    3456788


Q ss_pred             EecCCeEEEEECCCCcEEEE---ee---eccCEEEEe-----eCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEE
Q 009993          253 GSWDMTVRVWDRALLKCLKV---LR---HSDWVYGLA-----PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKS  321 (520)
Q Consensus       253 ~s~dg~v~iwd~~~~~~~~~---~~---~~~~v~~~~-----~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~  321 (520)
                      .+.|.+|++|-+........   +.   ....+.++.     +....+.              ..+.+.+..+|...|++
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve--------------a~prRv~aNaHtyhiNS  169 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE--------------ASPRRVYANAHTYHINS  169 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee--------------eeeeeeccccceeEeee
Confidence            88899999998864432220   11   122222222     1111111              12455566789999999


Q ss_pred             EEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCC-----cCCEEEEEecC---CEEEEEeCCCcEEEEeCCc
Q 009993          322 LARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH-----TGPVNSLAFEF---PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       322 l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~  393 (520)
                      +.++.|+..++++ +|=.|.+|++.-.....   .+....++     +..|++..|+|   +.++-.+..|+|++-|++.
T Consensus       170 IS~NsD~Et~lSA-DdLRINLWnlei~d~sF---nIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~  245 (433)
T KOG1354|consen  170 ISVNSDKETFLSA-DDLRINLWNLEIIDQSF---NIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ  245 (433)
T ss_pred             eeecCccceEeec-cceeeeeccccccCCce---eEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence            9999999988876 67789999986543221   22223333     34688899988   6899999999999999995


Q ss_pred             ccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEe--cCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccc----
Q 009993          394 LLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIR----  467 (520)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~----  467 (520)
                      .......   .......+-......+.+--.+|..+.|  +|+++++-+. -+|++||+......-+..+...-.+    
T Consensus       246 ~aLCd~h---sKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc  321 (433)
T KOG1354|consen  246 SALCDAH---SKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLC  321 (433)
T ss_pred             hhhhcch---hhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHH
Confidence            3211100   0000000001111122333344555555  5568888776 5899999964433222111111111    


Q ss_pred             --cchhhhhccceeeeccCCCccccccc
Q 009993          468 --LENRMRRRKLQTEMSSKGGRTDQCSV  493 (520)
Q Consensus       468 --~~~~~~~~~~~~~~s~~g~~~~~~s~  493 (520)
                        .+...--.+..++|+-++.++.+.+.
T Consensus       322 ~lYEnD~IfdKFec~~sg~~~~v~TGsy  349 (433)
T KOG1354|consen  322 SLYENDAIFDKFECSWSGNDSYVMTGSY  349 (433)
T ss_pred             HHhhccchhheeEEEEcCCcceEecccc
Confidence              12222234577899999888888664

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.95  E-value=6.4e-08  Score=92.26  Aligned_cols=181  Identities=14%  Similarity=0.246  Sum_probs=141.8

Q ss_pred             CEEEEEecCCeEEEEECCCCcEEEEee----eccCEE----EEe------------------eCCCEEEEEc-CCeEEEE
Q 009993          248 TRIYSGSWDMTVRVWDRALLKCLKVLR----HSDWVY----GLA------------------PHDTTVASTS-GSDVYIW  300 (520)
Q Consensus       248 ~~l~s~s~dg~v~iwd~~~~~~~~~~~----~~~~v~----~~~------------------~~~~~l~~~~-d~~i~iw  300 (520)
                      .+++....||.+++||...++....+.    ..+..+    .+.                  .+-..++-|. .|.|.+|
T Consensus         6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y   85 (541)
T KOG4547|consen    6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY   85 (541)
T ss_pred             heEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence            578889999999999999988777664    112111    121                  1233566666 8999999


Q ss_pred             ECCCCeeeEEee-cccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCC--EE
Q 009993          301 DTNSGCLLTVVN-GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP--WL  377 (520)
Q Consensus       301 d~~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l  377 (520)
                      +...|+....+. ..|.+.|.++.++.+-..|.+++.|+.+..|+....      ..+..+......+.+++..|+  .+
T Consensus        86 s~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~------~~~~~~~~~~~~~~sl~is~D~~~l  159 (541)
T KOG4547|consen   86 SVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK------VIIRIWKEQKPLVSSLCISPDGKIL  159 (541)
T ss_pred             EecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc------eeeeeeccCCCccceEEEcCCCCEE
Confidence            999999988887 679999999999999999999999999999999988      677788888888999999876  77


Q ss_pred             EEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEec-------CC-EEEEecCCCeEEEEe
Q 009993          378 VSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG-------AD-RIVCGGEEGIVRIWN  449 (520)
Q Consensus       378 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~-~l~sg~~Dg~v~iwd  449 (520)
                      ++++  +.|++||+++                   ......+.||...|.+++|.       |. +|.+...+..+.+|-
T Consensus       160 ~~as--~~ik~~~~~~-------------------kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~  218 (541)
T KOG4547|consen  160 LTAS--RQIKVLDIET-------------------KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV  218 (541)
T ss_pred             Eecc--ceEEEEEccC-------------------ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence            7776  5799999998                   45566788999998888873       23 455555666788888


Q ss_pred             CCchHh
Q 009993          450 FSQAFE  455 (520)
Q Consensus       450 ~~~~~~  455 (520)
                      +.....
T Consensus       219 v~~~~k  224 (541)
T KOG4547|consen  219 VEKEDK  224 (541)
T ss_pred             EEcccc
Confidence            765433

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.95  E-value=3.3e-07  Score=91.05  Aligned_cols=153  Identities=19%  Similarity=0.192  Sum_probs=100.7

Q ss_pred             EeccCCCCeEEEEE--cCCEEEEEecC---CeEEEEECCCCcEEEEeeeccCEE--EEeeCCCEEEEE-c-C--CeEEEE
Q 009993          232 RLWEHEGPITSLAL--DLTRIYSGSWD---MTVRVWDRALLKCLKVLRHSDWVY--GLAPHDTTVAST-S-G--SDVYIW  300 (520)
Q Consensus       232 ~~~~h~~~v~~l~~--~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~-~-d--~~i~iw  300 (520)
                      .+..+...+.+..|  ++++|+.++.+   ..|++||+.+++......+...+.  .++++++.|+.. + +  ..|++|
T Consensus       184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~  263 (417)
T TIGR02800       184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVM  263 (417)
T ss_pred             EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEE
Confidence            34456667778888  77888776644   479999999886654444433333  445888877654 3 3  359999


Q ss_pred             ECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC-CC--eEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--C
Q 009993          301 DTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DG--AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P  375 (520)
Q Consensus       301 d~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~  375 (520)
                      |+.++......  .+........|+|+|+.|+..+. ++  .|+++|+.++.       ...+..+...+....|+|  +
T Consensus       264 d~~~~~~~~l~--~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~-------~~~l~~~~~~~~~~~~spdg~  334 (417)
T TIGR02800       264 DLDGKQLTRLT--NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE-------VRRLTFRGGYNASPSWSPDGD  334 (417)
T ss_pred             ECCCCCEEECC--CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-------EEEeecCCCCccCeEECCCCC
Confidence            99887644332  24444556789999998876554 33  57777776552       223333445566778865  6


Q ss_pred             EEEEEeCCC---cEEEEeCCc
Q 009993          376 WLVSAAGDG---KLSLIDVRK  393 (520)
Q Consensus       376 ~l~s~s~dg---~i~vwd~~~  393 (520)
                      +|+.++.++   .|.+||+.+
T Consensus       335 ~i~~~~~~~~~~~i~~~d~~~  355 (417)
T TIGR02800       335 LIAFVHREGGGFNIAVMDLDG  355 (417)
T ss_pred             EEEEEEccCCceEEEEEeCCC
Confidence            777777665   788888876

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.94  E-value=4.4e-07  Score=82.52  Aligned_cols=216  Identities=15%  Similarity=0.131  Sum_probs=133.1

Q ss_pred             CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEE-
Q 009993          203 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVY-  280 (520)
Q Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~-  280 (520)
                      +|.|..||..++... +          ...+..-.....+... +++.+++++.++.+..||..+|+.+..+.....+. 
T Consensus         2 ~g~l~~~d~~tG~~~-W----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~   70 (238)
T PF13360_consen    2 DGTLSALDPRTGKEL-W----------SYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG   70 (238)
T ss_dssp             TSEEEEEETTTTEEE-E----------EEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS
T ss_pred             CCEEEEEECCCCCEE-E----------EEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc
Confidence            577888888776421 1          1111111222332234 88889999999999999999999988877433222 


Q ss_pred             -EEeeCCCEEEEEcCCeEEEEECCCCeeeEEe-eccc--ccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceee
Q 009993          281 -GLAPHDTTVASTSGSDVYIWDTNSGCLLTVV-NGAH--VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL  356 (520)
Q Consensus       281 -~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~-~~~~--~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~  356 (520)
                       -+..++..++...++.++.+|..+|+.+... ....  ............++.++++..++.|..+|++++      ..
T Consensus        71 ~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG------~~  144 (238)
T PF13360_consen   71 APVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG------KL  144 (238)
T ss_dssp             GEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT------EE
T ss_pred             eeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC------cE
Confidence             1234445545555889999999999998884 3211  011122222234888899989999999999999      44


Q ss_pred             eeeecCCcCC-----------EEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCccee
Q 009993          357 VATWIPHTGP-----------VNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN  425 (520)
Q Consensus       357 ~~~~~~h~~~-----------v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (520)
                      +.........           ...+.+....++.++.++.+.-+|+.++.....                   .. ....
T Consensus       145 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~-------------------~~-~~~~  204 (238)
T PF13360_consen  145 LWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWS-------------------KP-ISGI  204 (238)
T ss_dssp             EEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEE-------------------EC-SS-E
T ss_pred             EEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEE-------------------ec-CCCc
Confidence            4444332211           133444555888888888644449888531110                   00 0111


Q ss_pred             eEEEEecCCEEEEecCCCeEEEEeCCchHh
Q 009993          426 LLSVDIGADRIVCGGEEGIVRIWNFSQAFE  455 (520)
Q Consensus       426 v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~  455 (520)
                      ......++..|+.++.++.|..||+.+++.
T Consensus       205 ~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  205 YSLPSVDGGTLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             CECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred             cCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence            112456677888888999999999998864

...

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.93  E-value=1.8e-06  Score=85.03  Aligned_cols=117  Identities=17%  Similarity=0.165  Sum_probs=83.8

Q ss_pred             EEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-CEEEEEeC----------CCcEEEEeCCcccccC
Q 009993          330 FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAG----------DGKLSLIDVRKLLRSG  398 (520)
Q Consensus       330 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~----------dg~i~vwd~~~~~~~~  398 (520)
                      +++.|...|+|.++|+.++      .....+..|++.|.++.|-+ ..|++.+.          -+.+.|-|++++....
T Consensus       439 LvAvGT~sGTV~vvdvst~------~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~  512 (1062)
T KOG1912|consen  439 LVAVGTNSGTVDVVDVSTN------AVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKR  512 (1062)
T ss_pred             eEEeecCCceEEEEEecch------hhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccc
Confidence            5788999999999999999      67788889999999999965 34554433          3567788888864321


Q ss_pred             CCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhccc
Q 009993          399 RPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGI  466 (520)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~  466 (520)
                      -...              +.-......+..++..+.+|+..-.|.-+.+||+.+...++....+.+.+
T Consensus       513 fR~l--------------~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~i  566 (1062)
T KOG1912|consen  513 FRGL--------------QKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLI  566 (1062)
T ss_pred             cccC--------------CCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcE
Confidence            1000              00111223455566677899999999999999999888888776666543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.92  E-value=5.2e-07  Score=77.75  Aligned_cols=219  Identities=13%  Similarity=0.059  Sum_probs=139.2

Q ss_pred             CCeEEEEECCCCc--EEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCe
Q 009993          163 DSIVRMWHLEDGF--SIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPI  240 (520)
Q Consensus       163 dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  240 (520)
                      ...|-+|++-+..  .+...++-.-.-.++...-.+|+.|+..|...+|...+.....            .....|...|
T Consensus        51 t~sv~i~~~y~N~~~iv~~y~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~------------~~cd~snn~v  118 (344)
T KOG4532|consen   51 TISVPINSHYSNPKGIVEFYTGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHL------------YQCDVSNNDV  118 (344)
T ss_pred             eeeeEeccccCCchhhEEeeecccccchHhhccccEEEeccccceeeeecccCcccce------------eeecccccch
Confidence            3446667665432  2222233222222333455689999999999999987654222            2222333333


Q ss_pred             EEE---EEcCCEEEEEecCCeEEEEECCCCcEEEEeeecc--CEEEE--eeCCCEEEEEc-CCeEEEEECCCC-e-eeEE
Q 009993          241 TSL---ALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSD--WVYGL--APHDTTVASTS-GSDVYIWDTNSG-C-LLTV  310 (520)
Q Consensus       241 ~~l---~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--~v~~~--~~~~~~l~~~~-d~~i~iwd~~~~-~-~~~~  310 (520)
                      +-+   +-..-.+..++.|.++++.+++.+...... |..  .+.++  +++++++++.+ ...|..|.+... + .+..
T Consensus       119 ~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~-h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~  197 (344)
T KOG4532|consen  119 TLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV-HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI  197 (344)
T ss_pred             hhhhhhcccccceeeccCCcceeEEEEecCccccee-eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee
Confidence            222   113345778889999999988654433222 222  24444  48999999988 577888887653 2 2332


Q ss_pred             eecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC----CEEEEEeCCCcE
Q 009993          311 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF----PWLVSAAGDGKL  386 (520)
Q Consensus       311 ~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i  386 (520)
                      ........-.+..|+.....+|++..||++.|||++....+.. ....+-..|.+.++.+.|++    ++|+..-.-+.+
T Consensus       198 ~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~-~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~  276 (344)
T KOG4532|consen  198 YEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA-EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRV  276 (344)
T ss_pred             EecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh-hhcccCCCCCCceEEEEecCCCcceEEEEecCcceE
Confidence            2223444566888999999999999999999999998743221 12223345899999999985    577777777899


Q ss_pred             EEEeCCccc
Q 009993          387 SLIDVRKLL  395 (520)
Q Consensus       387 ~vwd~~~~~  395 (520)
                      .+-|+++..
T Consensus       277 hv~D~R~~~  285 (344)
T KOG4532|consen  277 HVVDTRNYV  285 (344)
T ss_pred             EEEEcccCc
Confidence            999999863

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.91  E-value=2.3e-08  Score=85.48  Aligned_cols=232  Identities=19%  Similarity=0.165  Sum_probs=134.6

Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEE------------EeCCC--CceEEEEecCCCEEEEEeCCCcEEEEE
Q 009993          145 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA------------SSKPL--GCTIRAVAADKKLLVAGGTDGFIHCWR  210 (520)
Q Consensus       145 V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~------------~~~~~--~~~v~~~~~~~~~l~sg~~dg~i~vwd  210 (520)
                      |+.+.+.. ...|+++..++.+......++.++.            .+..|  ..+...++.-++.++++..||.+.+.+
T Consensus        39 ~~~~~~v~-~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s  117 (319)
T KOG4714|consen   39 LSKVSLSA-EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS  117 (319)
T ss_pred             EEEeechh-hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence            56666653 3457777777776666554443322            22211  123334445567899999999999998


Q ss_pred             cccCcceeeeccCCccccceEEec-cCCCCeEEEEE--cCCEEEEEec-----CCeEEEEECCCCcEEEEe-eeccCEEE
Q 009993          211 AVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLAL--DLTRIYSGSW-----DMTVRVWDRALLKCLKVL-RHSDWVYG  281 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s~s~-----dg~v~iwd~~~~~~~~~~-~~~~~v~~  281 (520)
                      .+....            ...+.. .|.+ -.+.++  .++.+.++.-     -+..+.|+++..+.+..- .....|.+
T Consensus       118 ~~~~~~------------~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~  184 (319)
T KOG4714|consen  118 TDKDLA------------LMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA  184 (319)
T ss_pred             chHHHh------------hhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchh
Confidence            754210            000000 0111 111111  3344443322     123455555433222111 13344777


Q ss_pred             Ee--eCC-CEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecC-CCCEEEEEeCCCeEEEEEcccCccc-----
Q 009993          282 LA--PHD-TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH-TGDFLFTGGEDGAIHMYEIINDCTE-----  351 (520)
Q Consensus       282 ~~--~~~-~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~-----  351 (520)
                      ++  |.. +.+++|+ ||.+-+||.+.......+...|..+++.+.|+| ++..|+++++||.+-.||..+....     
T Consensus       185 l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~  264 (319)
T KOG4714|consen  185 LCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQA  264 (319)
T ss_pred             hhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCcc
Confidence            76  444 4555566 899999999998766666668999999999999 6678999999999999998743110     


Q ss_pred             ------------cc-eeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEe
Q 009993          352 ------------AN-VLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLID  390 (520)
Q Consensus       352 ------------~~-~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd  390 (520)
                                  .. +.....+......|+++...+..|++|+.-+.|++++
T Consensus       265 s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  265 SVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             ccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence                        00 0001111122334666666678999999988888875

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.89  E-value=5.4e-07  Score=89.15  Aligned_cols=156  Identities=21%  Similarity=0.158  Sum_probs=95.6

Q ss_pred             EeccCCCCeEEEEE--cCCEEEEEecC---CeEEEEECCCCcEEEEeeeccCE--EEEeeCCCEEEE-Ec-CCe--EEEE
Q 009993          232 RLWEHEGPITSLAL--DLTRIYSGSWD---MTVRVWDRALLKCLKVLRHSDWV--YGLAPHDTTVAS-TS-GSD--VYIW  300 (520)
Q Consensus       232 ~~~~h~~~v~~l~~--~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~-~~-d~~--i~iw  300 (520)
                      .+..+...+.+.+|  +++.|+..+.+   ..|.+||+.+++..........+  ..++|+++.++. .+ ++.  |+++
T Consensus       190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV  269 (427)
T ss_pred             EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence            34466778888888  77888776643   46999999988765443333333  345599988865 44 665  5555


Q ss_pred             ECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC-CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEE
Q 009993          301 DTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWL  377 (520)
Q Consensus       301 d~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l  377 (520)
                      |+..+. ...+. .+........|+|||+.|+..+. +|...+|.+.....  ....+ ++.+  .......|+|  ++|
T Consensus       270 d~~~~~-~~~lt-~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g--~~~~l-t~~g--~~~~~~~~SpDG~~I  342 (427)
T PRK02889        270 NADGSG-LRRLT-QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG--AAQRV-TFTG--SYNTSPRISPDGKLL  342 (427)
T ss_pred             ECCCCC-cEECC-CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC--ceEEE-ecCC--CCcCceEECCCCCEE
Confidence            565554 33443 24455667889999998876554 56667776543211  00111 2222  2233456765  677


Q ss_pred             EEEeCCC---cEEEEeCCcc
Q 009993          378 VSAAGDG---KLSLIDVRKL  394 (520)
Q Consensus       378 ~s~s~dg---~i~vwd~~~~  394 (520)
                      +..+.++   .|.+||+.++
T Consensus       343 a~~s~~~g~~~I~v~d~~~g  362 (427)
T PRK02889        343 AYISRVGGAFKLYVQDLATG  362 (427)
T ss_pred             EEEEccCCcEEEEEEECCCC
Confidence            7766554   5999998764

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.88  E-value=2.2e-08  Score=99.80  Aligned_cols=181  Identities=18%  Similarity=0.246  Sum_probs=134.6

Q ss_pred             cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEE
Q 009993          246 DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLA  323 (520)
Q Consensus       246 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~  323 (520)
                      ++..++.|+....+..+|+++.+..+... ..+.|.-+..+++.+.+|. .|+|.+-|+++.+.+.++. +|.+.|..+.
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-aHs~siSDfD  224 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFD-AHSGSISDFD  224 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeee-ccccceeeee
Confidence            66778889888889999999988888777 3335888889999999999 8999999999999999998 6999998766


Q ss_pred             ecCCCCEEEEEeC---------CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeC
Q 009993          324 RSHTGDFLFTGGE---------DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDV  391 (520)
Q Consensus       324 ~s~~~~~l~tg~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~  391 (520)
                      .  .|+.|++++.         |.-|+|||++...      .+..+.-+.++ .-+.|.|   ..+++++..|...+-|.
T Consensus       225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr------al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~  295 (1118)
T KOG1275|consen  225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR------ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDT  295 (1118)
T ss_pred             c--cCCeEEEeecccccccccccchhhhhhhhhhh------ccCCcccccCc-hhhhhcccccceEEEEecccceeeccc
Confidence            5  6899998875         5568999999883      33333333333 4566776   58899999999999985


Q ss_pred             CcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEe
Q 009993          392 RKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWN  449 (520)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd  449 (520)
                      .+...+.        ....     .....+.....++++.+++.++.|..+|.|.+|.
T Consensus       296 ~~lsNP~--------~~~~-----~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  296 ATLSNPP--------AGVK-----MVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cccCCCc--------ccee-----EEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            4321110        0000     0011122245567777788999999999999997

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.87  E-value=1.1e-05  Score=77.37  Aligned_cols=241  Identities=15%  Similarity=0.139  Sum_probs=148.3

Q ss_pred             ccEEEEEEccCCCEEEEEeC----CCeEEEEECCCC--c--EEEEeC--CCCceEEEEecCCCEEEEEeC-CCcEEEEEc
Q 009993          143 EAVLTVFVLASAKLLFTSGY----DSIVRMWHLEDG--F--SIASSK--PLGCTIRAVAADKKLLVAGGT-DGFIHCWRA  211 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~sgs~----dg~v~vwd~~~~--~--~~~~~~--~~~~~v~~~~~~~~~l~sg~~-dg~i~vwd~  211 (520)
                      .....++++|++++|+++..    ++.|..|++...  .  .+....  +....-.++.+++++|+++.. +|.|.++++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            34466788999999999877    578999988764  2  233332  333344566799999988875 899999998


Q ss_pred             ccCcceeeeccCCccccceEEe--------ccCCCCeEEEEE--cCCEEEEEec-CCeEEEEECCCCc--EEE--Eee--
Q 009993          212 VEVLPHLFDISGSEKQNTQFRL--------WEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDRALLK--CLK--VLR--  274 (520)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~l~~--~~~~l~s~s~-dg~v~iwd~~~~~--~~~--~~~--  274 (520)
                      ........       .......        ..-.....++.+  +++++++... ...|.+|++....  ...  .+.  
T Consensus       117 ~~~g~l~~-------~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~  189 (345)
T PF10282_consen  117 DDDGSLGE-------VVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVP  189 (345)
T ss_dssp             CTTSEEEE-------EEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECS
T ss_pred             cCCcccce-------eeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccc
Confidence            76311000       0000000        012345667777  6677776543 3579999987654  322  222  


Q ss_pred             eccCEE--EEeeCCCEEEEEc--CCeEEEEECC--CCe--eeEEeec---cc--ccceEEEEecCCCCEEEEEe-CCCeE
Q 009993          275 HSDWVY--GLAPHDTTVASTS--GSDVYIWDTN--SGC--LLTVVNG---AH--VGNTKSLARSHTGDFLFTGG-EDGAI  340 (520)
Q Consensus       275 ~~~~v~--~~~~~~~~l~~~~--d~~i~iwd~~--~~~--~~~~~~~---~~--~~~i~~l~~s~~~~~l~tg~-~dg~i  340 (520)
                      ....-.  .+.++++++++..  ++.|.++++.  ++.  .+..+..   +.  ......+.++|+|++|+++. ..+.|
T Consensus       190 ~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI  269 (345)
T PF10282_consen  190 PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI  269 (345)
T ss_dssp             TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred             cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence            223333  3458888887776  7899999988  443  2222221   11  12578899999999988765 46789


Q ss_pred             EEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEe-CCCcEEEEeCC
Q 009993          341 HMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAA-GDGKLSLIDVR  392 (520)
Q Consensus       341 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~  392 (520)
                      .+|++....  ..+..+..+.......+.+.++|  ++|+++. .++.|.+|++.
T Consensus       270 ~vf~~d~~~--g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  270 SVFDLDPAT--GTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEEECTTT--TTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEecCC--CceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            999994321  11233444433344578999955  6777776 56789999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.87  E-value=3.9e-07  Score=88.76  Aligned_cols=213  Identities=15%  Similarity=0.155  Sum_probs=131.5

Q ss_pred             cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc---------------EEEEeCCCCceEEEEe--cCCCEEEEEeCCC
Q 009993          142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF---------------SIASSKPLGCTIRAVA--ADKKLLVAGGTDG  204 (520)
Q Consensus       142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~---------------~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg  204 (520)
                      .....|+.|+....+++.|+.||.++|-.+.+..               .-.++.+|..+|.-+.  .+...|-+...+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            3456899999999999999999999999886531               1134678988877665  5667888999999


Q ss_pred             cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeE--------EEEECC---------
Q 009993          205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTV--------RVWDRA---------  265 (520)
Q Consensus       205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v--------~iwd~~---------  265 (520)
                      .|.||-+-.+.-.           ....-....+.|.+++|  +|..+.....||.|        +||.-+         
T Consensus        94 lIiVWmlykgsW~-----------EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv  162 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWC-----------EEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHV  162 (1189)
T ss_pred             eEEEEeeecccHH-----------HHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccce
Confidence            9999987655311           11111123455666666  55555444444444        344311         


Q ss_pred             --------------CCcEE-----------------EEee-----eccCEEE----------EeeCCCEEEEEc-CCeEE
Q 009993          266 --------------LLKCL-----------------KVLR-----HSDWVYG----------LAPHDTTVASTS-GSDVY  298 (520)
Q Consensus       266 --------------~~~~~-----------------~~~~-----~~~~v~~----------~~~~~~~l~~~~-d~~i~  298 (520)
                                    .+++.                 ....     .+..+..          +.|+...++++. .|.+.
T Consensus       163 ~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Q  242 (1189)
T KOG2041|consen  163 LWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQ  242 (1189)
T ss_pred             eecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceeh
Confidence                          11100                 0000     0011111          124556677777 67777


Q ss_pred             EEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCC---------eEEEEEcccCccccceeeeeeecCCcCCEEE
Q 009993          299 IWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG---------AIHMYEIINDCTEANVLLVATWIPHTGPVNS  369 (520)
Q Consensus       299 iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg---------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~  369 (520)
                      |-.-.+......+.  ..-.+....|+++|..|++++.|.         .|.+|..-.       ..+.++......|++
T Consensus       243 iMR~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G-------~i~gtlkvpg~~It~  313 (1189)
T KOG2041|consen  243 IMRSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG-------HIVGTLKVPGSCITG  313 (1189)
T ss_pred             hhhhcCCCCCeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEeccch-------hheEEEecCCceeee
Confidence            76554444444443  235688899999999999987643         455554322       356677777778888


Q ss_pred             EEecC
Q 009993          370 LAFEF  374 (520)
Q Consensus       370 l~~~~  374 (520)
                      ++|.+
T Consensus       314 lsWEg  318 (1189)
T KOG2041|consen  314 LSWEG  318 (1189)
T ss_pred             eEEcC
Confidence            88854

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.85  E-value=5.8e-06  Score=90.06  Aligned_cols=247  Identities=10%  Similarity=0.010  Sum_probs=143.3

Q ss_pred             EEEEccC-CCEEEEEeCCCeEEEEECCCCcEEEEeCC--C--------------CceEEEEecCCCEEEEEe-CCCcEEE
Q 009993          147 TVFVLAS-AKLLFTSGYDSIVRMWHLEDGFSIASSKP--L--------------GCTIRAVAADKKLLVAGG-TDGFIHC  208 (520)
Q Consensus       147 ~l~~~~~-~~~l~sgs~dg~v~vwd~~~~~~~~~~~~--~--------------~~~v~~~~~~~~~l~sg~-~dg~i~v  208 (520)
                      .++++++ +.++++-+.++.|++||.. +..+..+.+  .              ...-.++.++++.|+++. .++.|++
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~  650 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE  650 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence            5778764 6677777888999999975 444433322  0              112235556777665554 4577999


Q ss_pred             EEcccCcceeeeccCCccc---c-ceEEeccCCCCeEEEEEc---CCEEEEEecCCeEEEEECCCCcEEEEeee------
Q 009993          209 WRAVEVLPHLFDISGSEKQ---N-TQFRLWEHEGPITSLALD---LTRIYSGSWDMTVRVWDRALLKCLKVLRH------  275 (520)
Q Consensus       209 wd~~~~~~~~~~~~~~~~~---~-~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~v~iwd~~~~~~~~~~~~------  275 (520)
                      +|..++....+.-.+....   . ..... ..-.....++++   +..+++.+.++.|++||..++........      
T Consensus       651 id~~~~~V~tlag~G~~g~~~~gg~~~~~-~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~  729 (1057)
T PLN02919        651 IDFVNETVRTLAGNGTKGSDYQGGKKGTS-QVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNL  729 (1057)
T ss_pred             EecCCCEEEEEeccCcccCCCCCChhhhH-hhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccC
Confidence            9987664322211110000   0 00000 001123467773   34566667789999999987654321110      


Q ss_pred             ---c------cCE--EEEeeCCCEEEEEc--CCeEEEEECCCCeeeEEee-----------cc---------cccceEEE
Q 009993          276 ---S------DWV--YGLAPHDTTVASTS--GSDVYIWDTNSGCLLTVVN-----------GA---------HVGNTKSL  322 (520)
Q Consensus       276 ---~------~~v--~~~~~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~-----------~~---------~~~~i~~l  322 (520)
                         .      ...  .++++++..++++.  ++.|++||+.++.......           .+         .......+
T Consensus       730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv  809 (1057)
T PLN02919        730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV  809 (1057)
T ss_pred             CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence               0      111  23447777555544  6899999998765321110           00         01134688


Q ss_pred             EecCCCCEEEEEeCCCeEEEEEcccCccccceee-e------eeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993          323 ARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL-V------ATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       323 ~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~------~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  393 (520)
                      +++++|+++++-+.++.|++||..++........ .      ....+.-.....|++++  +.+++-+.++.|++||+.+
T Consensus       810 avd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        810 LCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             eEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence            9999999988889999999999987621100000 0      00111223567888864  6788888899999999987


Q ss_pred             cc
Q 009993          394 LL  395 (520)
Q Consensus       394 ~~  395 (520)
                      ..
T Consensus       890 ~~  891 (1057)
T PLN02919        890 GE  891 (1057)
T ss_pred             Cc
Confidence            53

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.82  E-value=7.1e-08  Score=87.73  Aligned_cols=146  Identities=16%  Similarity=0.144  Sum_probs=98.1

Q ss_pred             CCEEEEEecCCeEEEEECCCCc----EEEEee---eccCEEEEeeCCCEEEEEcC---CeEEEEECCCCeeeEEeecccc
Q 009993          247 LTRIYSGSWDMTVRVWDRALLK----CLKVLR---HSDWVYGLAPHDTTVASTSG---SDVYIWDTNSGCLLTVVNGAHV  316 (520)
Q Consensus       247 ~~~l~s~s~dg~v~iwd~~~~~----~~~~~~---~~~~v~~~~~~~~~l~~~~d---~~i~iwd~~~~~~~~~~~~~~~  316 (520)
                      +.+++.+..+....++++....    ++....   ....+..+..+...+++-.-   ..+.+|....+.+...+  ||-
T Consensus        74 ~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~l--Ghv  151 (390)
T KOG3914|consen   74 GRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPIL--GHV  151 (390)
T ss_pred             ceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhh--hhh
Confidence            3556666666665566654332    222222   22223333334444443333   44556665555555444  799


Q ss_pred             cceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeee-ecCCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcc
Q 009993          317 GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT-WIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       317 ~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~  394 (520)
                      ..++.++++||+++++++..|..|++-......      .+.. ..||..-|..++.-+ ..|++||.|++|++||+.++
T Consensus       152 Sml~dVavS~D~~~IitaDRDEkIRvs~ypa~f------~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sg  225 (390)
T KOG3914|consen  152 SMLLDVAVSPDDQFIITADRDEKIRVSRYPATF------VIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSG  225 (390)
T ss_pred             hhhheeeecCCCCEEEEecCCceEEEEecCccc------chhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccC
Confidence            999999999999999999999999998876652      2332 457999999999955 56799999999999999998


Q ss_pred             cccCCC
Q 009993          395 LRSGRP  400 (520)
Q Consensus       395 ~~~~~~  400 (520)
                      ......
T Consensus       226 k~L~t~  231 (390)
T KOG3914|consen  226 KLLDTC  231 (390)
T ss_pred             Cccccc
Confidence            666433

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.77  E-value=1.5e-07  Score=94.05  Aligned_cols=179  Identities=17%  Similarity=0.241  Sum_probs=134.9

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEE
Q 009993          153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR  232 (520)
Q Consensus       153 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  232 (520)
                      ++..++-|+.-..+..+|+.+.+..+...-....|.-+..+++.+.+|...|+|.+-|..+             ...+.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s-------------~~~iht  212 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNS-------------FETIHT  212 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCc-------------Cceeee
Confidence            3456777877788889999988877776655555777788999999999999999998765             357888


Q ss_pred             eccCCCCeEEEEEcCCEEEEEec---------CCeEEEEECCCCcEEEEee-eccC-EEEEee-CCCEEEEEc-CCeEEE
Q 009993          233 LWEHEGPITSLALDLTRIYSGSW---------DMTVRVWDRALLKCLKVLR-HSDW-VYGLAP-HDTTVASTS-GSDVYI  299 (520)
Q Consensus       233 ~~~h~~~v~~l~~~~~~l~s~s~---------dg~v~iwd~~~~~~~~~~~-~~~~-v~~~~~-~~~~l~~~~-d~~i~i  299 (520)
                      +..|++.|.++...|+.|++++.         |..|+|||++..+.+.-+. +.++ ...+.| -...+++++ .|...+
T Consensus       213 ~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~  292 (1118)
T KOG1275|consen  213 FDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQF  292 (1118)
T ss_pred             eeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceee
Confidence            99999999999999999999986         5568999999887776655 2221 222222 233445555 899999


Q ss_pred             EECCC---C-eeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEc
Q 009993          300 WDTNS---G-CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI  345 (520)
Q Consensus       300 wd~~~---~-~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~  345 (520)
                      .|..+   . ..+..+. .....+.+++++++++.++.|..+|.|.+|.-
T Consensus       293 vd~~~lsNP~~~~~~v~-p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  293 VDTATLSNPPAGVKMVN-PNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             ccccccCCCccceeEEc-cCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            98433   2 1122222 34556999999999999999999999999983

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.76  E-value=1.1e-08  Score=63.25  Aligned_cols=37  Identities=16%  Similarity=0.445  Sum_probs=35.0

Q ss_pred             hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEE
Q 009993          134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWH  170 (520)
Q Consensus       134 ~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd  170 (520)
                      +++++++|.+.|++|+|+|++.+|++|+.|++|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            3678899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.76  E-value=1.1e-05  Score=87.88  Aligned_cols=262  Identities=10%  Similarity=0.038  Sum_probs=138.8

Q ss_pred             EEec-CCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEe-cCCeEEEEEC
Q 009993          189 AVAA-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDR  264 (520)
Q Consensus       189 ~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~v~iwd~  264 (520)
                      ++.+ ++..+++-+.++.|.++|............+......-..-..+-.....+++  +++.|+.+. ..+.|+.+|.
T Consensus       574 avd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~  653 (1057)
T PLN02919        574 AIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDF  653 (1057)
T ss_pred             EEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEec
Confidence            4554 45566777778889999875432111100000000000000011233567788  356665554 4578999998


Q ss_pred             CCCcEEEEeee-------------------ccC-EEEEee-CCCEEEEEc-CCeEEEEECCCCeeeEEeecc--------
Q 009993          265 ALLKCLKVLRH-------------------SDW-VYGLAP-HDTTVASTS-GSDVYIWDTNSGCLLTVVNGA--------  314 (520)
Q Consensus       265 ~~~~~~~~~~~-------------------~~~-v~~~~~-~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~--------  314 (520)
                      .++.. .++..                   ..+ -.++.+ ++.++++.. ++.|++||..++........+        
T Consensus       654 ~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~  732 (1057)
T PLN02919        654 VNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGS  732 (1057)
T ss_pred             CCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCC
Confidence            77643 22210                   011 124446 445555555 789999999887543211100        


Q ss_pred             -----cccceEEEEecCCCCE-EEEEeCCCeEEEEEcccCccccce-------eeeeeecCC--------cCCEEEEEec
Q 009993          315 -----HVGNTKSLARSHTGDF-LFTGGEDGAIHMYEIINDCTEANV-------LLVATWIPH--------TGPVNSLAFE  373 (520)
Q Consensus       315 -----~~~~i~~l~~s~~~~~-l~tg~~dg~i~iwd~~~~~~~~~~-------~~~~~~~~h--------~~~v~~l~~~  373 (520)
                           .......++++|+++. +++-+.++.|++||+.++......       .....+..+        -....+++++
T Consensus       733 ~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd  812 (1057)
T PLN02919        733 SGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA  812 (1057)
T ss_pred             ccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe
Confidence                 1124567999999984 455666799999999875310000       000011101        1124577776


Q ss_pred             C--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCC
Q 009993          374 F--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       374 ~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~  451 (520)
                      +  +.+++-+.++.|++||..+.........+....  .  .............-.+++.+++.+++-+.+++|++||+.
T Consensus       813 ~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~--~--dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~  888 (1057)
T PLN02919        813 KDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGF--K--DGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN  888 (1057)
T ss_pred             CCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCC--C--CCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence            5  577788889999999997643221110010000  0  000000000112234666778888888999999999998


Q ss_pred             chHh
Q 009993          452 QAFE  455 (520)
Q Consensus       452 ~~~~  455 (520)
                      ++..
T Consensus       889 ~~~~  892 (1057)
T PLN02919        889 KGEA  892 (1057)
T ss_pred             CCcc
Confidence            8754

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=2.3e-06  Score=81.14  Aligned_cols=239  Identities=15%  Similarity=0.156  Sum_probs=139.0

Q ss_pred             ccEEEEEEccCCCEEEEEeC-----------CCeEEEEECCCCcEEEEeCCC-----CceEEEEecCCCEEEEEeCCCcE
Q 009993          143 EAVLTVFVLASAKLLFTSGY-----------DSIVRMWHLEDGFSIASSKPL-----GCTIRAVAADKKLLVAGGTDGFI  206 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~sgs~-----------dg~v~vwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~l~sg~~dg~i  206 (520)
                      ..|.-+.|||..+||+|=|.           ...++|||+.+|...+.+...     .-++..++.|++++|--.. ..|
T Consensus       250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~si  328 (698)
T KOG2314|consen  250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSI  328 (698)
T ss_pred             CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceE
Confidence            35788999999999999764           257999999999988887652     2356677889998887665 457


Q ss_pred             EEEEcccCcceeeec-----cC--------------------Ccc-----------ccceEEeccCCCCeEEEEE--cCC
Q 009993          207 HCWRAVEVLPHLFDI-----SG--------------------SEK-----------QNTQFRLWEHEGPITSLAL--DLT  248 (520)
Q Consensus       207 ~vwd~~~~~~~~~~~-----~~--------------------~~~-----------~~~~~~~~~h~~~v~~l~~--~~~  248 (520)
                      .|++...-.  +++.     .+                    ...           ...+.+..-|+-.=..|.|  +|+
T Consensus       329 sIyEtpsf~--lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd  406 (698)
T KOG2314|consen  329 SIYETPSFM--LLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD  406 (698)
T ss_pred             EEEecCcee--eecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCc
Confidence            788754311  1000     00                    000           0000000001101112223  445


Q ss_pred             EEEEEe----------cCCeEEEEECCCCc-EEEEeeeccCEEEEe--eCCCEEEEEc----CCeEEEEECCC-C---ee
Q 009993          249 RIYSGS----------WDMTVRVWDRALLK-CLKVLRHSDWVYGLA--PHDTTVASTS----GSDVYIWDTNS-G---CL  307 (520)
Q Consensus       249 ~l~s~s----------~dg~v~iwd~~~~~-~~~~~~~~~~v~~~~--~~~~~l~~~~----d~~i~iwd~~~-~---~~  307 (520)
                      +|+.--          .-..+.|+.++... .+........|..++  |.|+.+++-+    ..++.+|-+++ .   ..
T Consensus       407 yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l  486 (698)
T KOG2314|consen  407 YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL  486 (698)
T ss_pred             EEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh
Confidence            544311          11123344443322 222333556666666  8888776655    26788888873 2   23


Q ss_pred             eEEeecccccceEEEEecCCCCEEEEE---eCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeC
Q 009993          308 LTVVNGAHVGNTKSLARSHTGDFLFTG---GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG  382 (520)
Q Consensus       308 ~~~~~~~~~~~i~~l~~s~~~~~l~tg---~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~  382 (520)
                      +..+.   ....+.+.|+|.|++++.+   |..|.+.++|+....      ...+-.......+.+.|+|  +|+++++.
T Consensus       487 Vk~~d---k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~------~k~~~~~eh~~at~veWDPtGRYvvT~ss  557 (698)
T KOG2314|consen  487 VKELD---KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYAD------LKDTASPEHFAATEVEWDPTGRYVVTSSS  557 (698)
T ss_pred             hhhhc---ccccceEEEcCCCcEEEEEEecccccceEEEecchhh------hhhccCccccccccceECCCCCEEEEeee
Confidence            33332   3457889999999998875   457889999987531      1111112222457788987  78888876


Q ss_pred             ------CCcEEEEeCCc
Q 009993          383 ------DGKLSLIDVRK  393 (520)
Q Consensus       383 ------dg~i~vwd~~~  393 (520)
                            |.--++|++..
T Consensus       558 ~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  558 SWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             hhhhccccceEEEEeec
Confidence                  45566777664

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.74  E-value=7.4e-07  Score=87.70  Aligned_cols=288  Identities=12%  Similarity=0.016  Sum_probs=176.3

Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--c------------CCCEEEEEeCCCcEEEEE
Q 009993          145 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--A------------DKKLLVAGGTDGFIHCWR  210 (520)
Q Consensus       145 V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~------------~~~~l~sg~~dg~i~vwd  210 (520)
                      -.++.|+|.| ++|-|+. ..|.|-|..+-+.+.++.-|...|+.+.  |            ..-.|+++...|.|.+||
T Consensus        18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d   95 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD   95 (1062)
T ss_pred             ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence            4677888866 5666664 5688999999999999998888877653  1            123677888889999999


Q ss_pred             cccCcceeeeccCCccccceEEeccCCCCeEEEEE-----cC-CEEEEEecCCeEEEEECCCCcEEEEeeeccCE-EEEe
Q 009993          211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-----DL-TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWV-YGLA  283 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-----~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v-~~~~  283 (520)
                      ...+.             ....+..|..++..++|     +. ..|++-....++.+|+..+|+..........+ .|+.
T Consensus        96 ~~~~s-------------~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~  162 (1062)
T KOG1912|consen   96 FVLAS-------------VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFR  162 (1062)
T ss_pred             ehhhh-------------hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeee
Confidence            87652             44556778999999999     23 55777777789999999999998887744444 4455


Q ss_pred             ---eCCCEEEE-EcCCeEEEEECCC-------CeeeEEeeccccc-------------------------ceEEEEecCC
Q 009993          284 ---PHDTTVAS-TSGSDVYIWDTNS-------GCLLTVVNGAHVG-------------------------NTKSLARSHT  327 (520)
Q Consensus       284 ---~~~~~l~~-~~d~~i~iwd~~~-------~~~~~~~~~~~~~-------------------------~i~~l~~s~~  327 (520)
                         .+.+.+.. ++.|.+.+.+.-.       ++..+ +...|..                         ....++|+|.
T Consensus       163 ~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q-I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~  241 (1062)
T KOG1912|consen  163 VDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ-ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPH  241 (1062)
T ss_pred             eCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEE-EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChh
Confidence               44454444 4477777766422       12222 1112221                         0113467776


Q ss_pred             CCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe--cC--CEEEEEeCCCcEEEEeCCcccccCCCCCC
Q 009993          328 GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSG  403 (520)
Q Consensus       328 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  403 (520)
                      -+.++-......+.++|++-.      .++....-..+.+.-+.+  +|  +.|+++-.||.+.+|--+.....++....
T Consensus       242 ~rn~lfi~~prellv~dle~~------~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~  315 (1062)
T KOG1912|consen  242 WRNILFITFPRELLVFDLEYE------CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNA  315 (1062)
T ss_pred             hhceEEEEeccceEEEcchhh------ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccch
Confidence            655555556778999999887      445444333444444444  44  68999999999999987654332221100


Q ss_pred             CceeeeeecCCCcccccCcceeeEEEEec-CCEEEEecCCCeEEEEeCCchH
Q 009993          404 KRVSRVIEVEPPQRMLHGFECNLLSVDIG-ADRIVCGGEEGIVRIWNFSQAF  454 (520)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~sg~~Dg~v~iwd~~~~~  454 (520)
                      .-...+.+.....+........+....|. +..++.-=.+|.+.+|.+.+++
T Consensus       316 ~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r  367 (1062)
T KOG1912|consen  316 SLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR  367 (1062)
T ss_pred             hhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCC
Confidence            00000000011111122222223333344 3344444457788899988654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.73  E-value=5.1e-05  Score=68.85  Aligned_cols=264  Identities=11%  Similarity=0.119  Sum_probs=156.9

Q ss_pred             CCeEEEEECCCCcE-E---EEe-CCCCceEEEEecCCCEEEEEeCC---CcEEEEEccc--CcceeeeccCCccccceEE
Q 009993          163 DSIVRMWHLEDGFS-I---ASS-KPLGCTIRAVAADKKLLVAGGTD---GFIHCWRAVE--VLPHLFDISGSEKQNTQFR  232 (520)
Q Consensus       163 dg~v~vwd~~~~~~-~---~~~-~~~~~~v~~~~~~~~~l~sg~~d---g~i~vwd~~~--~~~~~~~~~~~~~~~~~~~  232 (520)
                      ++-|.+|++.+..- +   ... ...+..-..+.++++.|+++..+   |.|..|.+..  |....           ...
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~-----------ln~   83 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTF-----------LNR   83 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEE-----------eec
Confidence            46699999974321 1   111 22344556777999989888665   6677777654  32211           111


Q ss_pred             eccCCCCeEEEEE--cCCEEEEEec-CCeEEEEECCC-CcEE---EEeeeccC----------EEE--EeeCCCEEEEEc
Q 009993          233 LWEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDRAL-LKCL---KVLRHSDW----------VYG--LAPHDTTVASTS  293 (520)
Q Consensus       233 ~~~h~~~v~~l~~--~~~~l~s~s~-dg~v~iwd~~~-~~~~---~~~~~~~~----------v~~--~~~~~~~l~~~~  293 (520)
                      ......+-..+++  ++++++++.. -|.|.++-++. |...   ..+.|.+.          +-.  +.|+++++++..
T Consensus        84 ~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D  163 (346)
T COG2706          84 QTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD  163 (346)
T ss_pred             cccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEee
Confidence            1112223356666  6678887765 47899998865 4332   33334433          333  349999999988


Q ss_pred             --CCeEEEEECCCCeeeEEee--cccccceEEEEecCCCCEEEEEeC-CCeEEEEEcccCccccceeeeeee---cC---
Q 009993          294 --GSDVYIWDTNSGCLLTVVN--GAHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDCTEANVLLVATW---IP---  362 (520)
Q Consensus       294 --d~~i~iwd~~~~~~~~~~~--~~~~~~i~~l~~s~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~~---~~---  362 (520)
                        -..|.+|++..|.....-.  -......+.|.|+|++++..+.++ +++|.+|......  ..+..++++   ..   
T Consensus       164 LG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~--g~~~~lQ~i~tlP~dF~  241 (346)
T COG2706         164 LGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAV--GKFEELQTIDTLPEDFT  241 (346)
T ss_pred             cCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCC--ceEEEeeeeccCccccC
Confidence              4779999999775432211  124566789999999998887665 8999999998751  122222222   11   


Q ss_pred             CcCCEEEEEec--CCEEEEEeC-CCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEe
Q 009993          363 HTGPVNSLAFE--FPWLVSAAG-DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCG  439 (520)
Q Consensus       363 h~~~v~~l~~~--~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg  439 (520)
                      ......+|..+  +++|.++.. ...|.++.+.....        ....+     ......+..-.-+.+++++++|+++
T Consensus       242 g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g--------~L~~~-----~~~~teg~~PR~F~i~~~g~~Liaa  308 (346)
T COG2706         242 GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG--------KLELV-----GITPTEGQFPRDFNINPSGRFLIAA  308 (346)
T ss_pred             CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC--------EEEEE-----EEeccCCcCCccceeCCCCCEEEEE
Confidence            12234455554  467777654 34788887765310        00000     0111234445566777888877776


Q ss_pred             cC-CCeEEEEeCCc
Q 009993          440 GE-EGIVRIWNFSQ  452 (520)
Q Consensus       440 ~~-Dg~v~iwd~~~  452 (520)
                      +. +..|.+|..+.
T Consensus       309 ~q~sd~i~vf~~d~  322 (346)
T COG2706         309 NQKSDNITVFERDK  322 (346)
T ss_pred             ccCCCcEEEEEEcC
Confidence            65 45788888764

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.73  E-value=2.9e-06  Score=73.30  Aligned_cols=192  Identities=9%  Similarity=-0.034  Sum_probs=124.6

Q ss_pred             cCCEEEEEecCCeEEEEECCCCcEEEEee--eccCEEEEe----eCCCEEEEEcCCeEEEEECCCCeeeEEeecccccce
Q 009993          246 DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA----PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNT  319 (520)
Q Consensus       246 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~----~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i  319 (520)
                      ...+|+.|+.-|...+|...+.+....+-  +...|.-+.    ..-..+++..|.++++.++.-+......... .-.+
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~-~~~~  161 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ-NLTQ  161 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecc-ccce
Confidence            44689999999999999998765443332  333333222    2233444444888888888766544443211 1237


Q ss_pred             EEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeee-eecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccc
Q 009993          320 KSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA-TWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLR  396 (520)
Q Consensus       320 ~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~  396 (520)
                      .+++++++++++++.+....|..|.+.....    ..+. .....++.-.+..|+.  ..+|+++.||++.|||++....
T Consensus       162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~se----y~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t  237 (344)
T KOG4532|consen  162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESE----YIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT  237 (344)
T ss_pred             eeeEEcCCCceEEEecCCCcceEEEeCCccc----eeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence            8999999999999999999999999987642    1222 2333344446667754  6899999999999999997643


Q ss_pred             cCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC----EEEEecCCCeEEEEeCCchHhH
Q 009993          397 SGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD----RIVCGGEEGIVRIWNFSQAFEI  456 (520)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~l~sg~~Dg~v~iwd~~~~~~~  456 (520)
                      +....              ......|.+.+..+.|+..    +|.-.-.-+.+.+-|++++...
T Consensus       238 pm~~~--------------sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~  287 (344)
T KOG4532|consen  238 PMAEI--------------SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH  287 (344)
T ss_pred             chhhh--------------cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence            32211              1112336666666666522    4444444578999999987543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.72  E-value=1.1e-05  Score=81.20  Aligned_cols=280  Identities=12%  Similarity=0.072  Sum_probs=158.7

Q ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCc------eEE--EEecCC-CEEEEEeCCCcEEEEEcccCcceeeeccCC
Q 009993          154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC------TIR--AVAADK-KLLVAGGTDGFIHCWRAVEVLPHLFDISGS  224 (520)
Q Consensus       154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~------~v~--~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~  224 (520)
                      +..++.++.++.|.-.|..+|+.+..+.....      .+.  .+...+ ..++.++.+|.|..+|.++++.. +.....
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~-W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQV-WKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEe-eeecCC
Confidence            55677788899999999999988877653322      111  111223 78888999999999999888532 111100


Q ss_pred             ccccceEEeccCCCCe-EEEEEcCCEEEEEe---------cCCeEEEEECCCCcEEEEeeec-c----------------
Q 009993          225 EKQNTQFRLWEHEGPI-TSLALDLTRIYSGS---------WDMTVRVWDRALLKCLKVLRHS-D----------------  277 (520)
Q Consensus       225 ~~~~~~~~~~~h~~~v-~~l~~~~~~l~s~s---------~dg~v~iwd~~~~~~~~~~~~~-~----------------  277 (520)
                      ....       ....+ .+..+.+..++.++         .++.+..+|..+++.+..+... .                
T Consensus       140 ~~~~-------~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~  212 (488)
T cd00216         140 DQVP-------PGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWG  212 (488)
T ss_pred             CCcC-------cceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceec
Confidence            0000       00001 11223345566654         3688999999999988876521 1                


Q ss_pred             ----CE---EEEeeCCCEEEEEc-CC------------------eEEEEECCCCeeeEEeeccccc-----ceEEEEec-
Q 009993          278 ----WV---YGLAPHDTTVASTS-GS------------------DVYIWDTNSGCLLTVVNGAHVG-----NTKSLARS-  325 (520)
Q Consensus       278 ----~v---~~~~~~~~~l~~~~-d~------------------~i~iwd~~~~~~~~~~~~~~~~-----~i~~l~~s-  325 (520)
                          .+   ..+.+.+..++.++ ++                  .|.-+|..+|+.+..+...+..     ......+. 
T Consensus       213 ~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~  292 (488)
T cd00216         213 PGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLAD  292 (488)
T ss_pred             CCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEe
Confidence                01   12223456666665 54                  6999999999998887532211     00001111 


Q ss_pred             ---CCCC---EEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEe------------------
Q 009993          326 ---HTGD---FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAA------------------  381 (520)
Q Consensus       326 ---~~~~---~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s------------------  381 (520)
                         -++.   .++.++.+|.+..+|.++++      .+......   ...++.+|+.++.++                  
T Consensus       293 ~~~~~g~~~~~V~~g~~~G~l~ald~~tG~------~~W~~~~~---~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~  363 (488)
T cd00216         293 IKPKDGKPVPAIVHAPKNGFFYVLDRTTGK------LISARPEV---EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKP  363 (488)
T ss_pred             ccccCCCeeEEEEEECCCceEEEEECCCCc------EeeEeEee---ccccccCCceEEEccccccccCcccccCCCCCC
Confidence               1333   67888899999999999994      33322110   111233444444332                  


Q ss_pred             CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHH
Q 009993          382 GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERR  459 (520)
Q Consensus       382 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~  459 (520)
                      .+|.|.-.|+.++...-........       .. ...... .....+...++.|+.++.||.|+.+|..+|+.+.+.
T Consensus       364 ~~G~l~AlD~~tG~~~W~~~~~~~~-------~~-~~~g~~-~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~  432 (488)
T cd00216         364 GKGGLAALDPKTGKVVWEKREGTIR-------DS-WNIGFP-HWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKF  432 (488)
T ss_pred             CceEEEEEeCCCCcEeeEeeCCccc-------cc-cccCCc-ccCcceEecCCeEEEECCCCeEEEEECCCCceeeEE
Confidence            3567777787776433322111000       00 000000 001122345678999999999999999999877653

The alignment model contains an 8-bladed beta-propeller.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.71  E-value=0.00012  Score=66.49  Aligned_cols=244  Identities=12%  Similarity=0.110  Sum_probs=157.0

Q ss_pred             hccccccEEEEEEccCCCEEEEEeCC---CeEEEEECCC--CcEE--E--EeCCCCceEEEEecCCCEEEEEeCC-CcEE
Q 009993          138 LYGHTEAVLTVFVLASAKLLFTSGYD---SIVRMWHLED--GFSI--A--SSKPLGCTIRAVAADKKLLVAGGTD-GFIH  207 (520)
Q Consensus       138 l~~h~~~V~~l~~~~~~~~l~sgs~d---g~v~vwd~~~--~~~~--~--~~~~~~~~v~~~~~~~~~l~sg~~d-g~i~  207 (520)
                      +-.+.+.++-|+|+|+++.|+++-.+   |.|..|.++.  |+..  .  ...++...-.++++++++++++... |.|.
T Consensus        35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~  114 (346)
T COG2706          35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS  114 (346)
T ss_pred             hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence            34667788999999999999988654   7788887764  4332  1  2344554556788999999988764 8899


Q ss_pred             EEEcccCcceeeeccCCccccceEEeccCCCC----------eEEEEE--cCCEEEEEec-CCeEEEEECCCCcEEEEee
Q 009993          208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGP----------ITSLAL--DLTRIYSGSW-DMTVRVWDRALLKCLKVLR  274 (520)
Q Consensus       208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----------v~~l~~--~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~  274 (520)
                      ++-+.+...          .........|.+.          +....+  ++++|++... -..|.+|++..+.....-.
T Consensus       115 v~p~~~dG~----------l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~  184 (346)
T COG2706         115 VYPLQADGS----------LQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADP  184 (346)
T ss_pred             EEEcccCCc----------cccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccc
Confidence            998865311          1112122223333          555555  6678877753 2368999998776543322


Q ss_pred             ----ecc--CEEEEeeCCCEEEEEc--CCeEEEEECCCC-ee---eEEe---ecc--cccceEEEEecCCCCEEEEEeC-
Q 009993          275 ----HSD--WVYGLAPHDTTVASTS--GSDVYIWDTNSG-CL---LTVV---NGA--HVGNTKSLARSHTGDFLFTGGE-  336 (520)
Q Consensus       275 ----~~~--~v~~~~~~~~~l~~~~--d~~i~iwd~~~~-~~---~~~~---~~~--~~~~i~~l~~s~~~~~l~tg~~-  336 (520)
                          ...  +=..+.|++++..+..  +++|.+|..... ..   ++.+   +..  .....-++..+|+|++|.++.. 
T Consensus       185 ~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg  264 (346)
T COG2706         185 AEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRG  264 (346)
T ss_pred             cccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCC
Confidence                222  2234458999988877  899999998773 22   2222   111  2335668889999999988754 


Q ss_pred             CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCC-CcEEEEeCCc
Q 009993          337 DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD-GKLSLIDVRK  393 (520)
Q Consensus       337 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d-g~i~vwd~~~  393 (520)
                      ...|.+|.+.....  ....+.....+....+...+++  ++|+++..| ..|.+|.+..
T Consensus       265 ~dsI~~f~V~~~~g--~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         265 HDSIAVFSVDPDGG--KLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             CCeEEEEEEcCCCC--EEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence            24688888765521  1233444444555567777865  788888765 5689998765

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.70  E-value=9.7e-05  Score=79.20  Aligned_cols=305  Identities=14%  Similarity=0.135  Sum_probs=177.3

Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCeEEEE----ECCCCc--EEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEc--
Q 009993          140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMW----HLEDGF--SIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRA--  211 (520)
Q Consensus       140 ~h~~~V~~l~~~~~~~~l~sgs~dg~v~vw----d~~~~~--~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~--  211 (520)
                      ...+.|.++.+.++...++.+..+|.|.+.    +..+..  .+..+ ..+....+++||+..|+..+.++++.+-+-  
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v-d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f  151 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV-DSGILAASWSPDEELLALVTGEGNLLLMTRDF  151 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE-cCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence            445789999999999999999999999999    544432  22222 234445566799999999999988877532  


Q ss_pred             --cc---------Ccceeeec---------cCCcccc-------c------eEEeccCCCCeEEEEE--cCCEEEEEec-
Q 009993          212 --VE---------VLPHLFDI---------SGSEKQN-------T------QFRLWEHEGPITSLAL--DLTRIYSGSW-  255 (520)
Q Consensus       212 --~~---------~~~~~~~~---------~~~~~~~-------~------~~~~~~h~~~v~~l~~--~~~~l~s~s~-  255 (520)
                        -.         +.....+.         .|+....       +      ...+. +...-..|+|  ||.++++.+. 
T Consensus       152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~  230 (928)
T PF04762_consen  152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE  230 (928)
T ss_pred             eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEE
Confidence              11         00001110         0110000       0      01111 3445567889  8899888775 


Q ss_pred             --C---CeEEEEECCCCcEEEEee---eccCEEEEeeCCCEEEEEcC----CeEEEEECCCCeeeEEeec---ccccceE
Q 009993          256 --D---MTVRVWDRALLKCLKVLR---HSDWVYGLAPHDTTVASTSG----SDVYIWDTNSGCLLTVVNG---AHVGNTK  320 (520)
Q Consensus       256 --d---g~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~l~~~~d----~~i~iwd~~~~~~~~~~~~---~~~~~i~  320 (520)
                        .   ..++||+-+ |....+-.   .-....+..|.|+++++..-    ..|.+|.. +|-....|..   .....|.
T Consensus       231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~  308 (928)
T PF04762_consen  231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVI  308 (928)
T ss_pred             cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceee
Confidence              2   579999975 55443333   11122344499999999872    34666654 4433333332   3456899


Q ss_pred             EEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec-CCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccc
Q 009993          321 SLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI-PHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLR  396 (520)
Q Consensus       321 ~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~  396 (520)
                      .+.|++++..||....|. |.+|-..+-.-    -..+.+. .....+..+.|+|   ..|...+.+|.+..+++.-...
T Consensus       309 ~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHW----YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~  383 (928)
T PF04762_consen  309 ELAWNSDSEILAVWLEDR-VQLWTRSNYHW----YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVS  383 (928)
T ss_pred             EEEECCCCCEEEEEecCC-ceEEEeeCCEE----EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEE
Confidence            999999999999977666 99998876521    1122222 2233455589976   5777777777777666542221


Q ss_pred             cCCCCC--CCceeee-------------eecCCCcccc-cCcceeeEEEEecCC--EEEEecCCCeEEEEeCCch
Q 009993          397 SGRPTS--GKRVSRV-------------IEVEPPQRML-HGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       397 ~~~~~~--~~~~~~~-------------~~~~~~~~~~-~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~  453 (520)
                      ......  ......+             ..+.||.... -....+|.++++..+  .+++-..||.|.+|.....
T Consensus       384 ~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  384 RSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             ecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence            111110  1110000             0112222111 122345666666544  6999999999999986543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.70  E-value=8e-06  Score=80.56  Aligned_cols=218  Identities=15%  Similarity=0.073  Sum_probs=123.1

Q ss_pred             hhccccccEEEEEEccCCCE---EEEEeCCC--eEEEEECCCCcEE--EEeCCCCceEEEEecCCCEEEEEeC-CC----
Q 009993          137 VLYGHTEAVLTVFVLASAKL---LFTSGYDS--IVRMWHLEDGFSI--ASSKPLGCTIRAVAADKKLLVAGGT-DG----  204 (520)
Q Consensus       137 ~l~~h~~~V~~l~~~~~~~~---l~sgs~dg--~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~l~sg~~-dg----  204 (520)
                      .|......+..=+|+|||+.   +++...+|  .|.+.++.+++..  ..+.+.. ..-.++|||+.|+..+. +|    
T Consensus       179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~-~~p~wSPDG~~Laf~s~~~g~~di  257 (428)
T PRK01029        179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQ-LMPTFSPRKKLLAFISDRYGNPDL  257 (428)
T ss_pred             EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCc-cceEECCCCCEEEEEECCCCCcce
Confidence            34445556677799999974   23444443  5777788877543  3333332 23478899998876553 23    


Q ss_pred             cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEe-cCCeEEEE--ECCC-CcEEEEee-ecc
Q 009993          205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVW--DRAL-LKCLKVLR-HSD  277 (520)
Q Consensus       205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~v~iw--d~~~-~~~~~~~~-~~~  277 (520)
                      .+..|++.++..          ........++.+.....+|  ||+.|+..+ .+|...+|  ++.. +.....+. ...
T Consensus       258 ~~~~~~~~~g~~----------g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~  327 (428)
T PRK01029        258 FIQSFSLETGAI----------GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR  327 (428)
T ss_pred             eEEEeecccCCC----------CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCC
Confidence            233456544210          0111111122233345667  777777655 46655555  4432 22233333 222


Q ss_pred             CE--EEEeeCCCEEEEEc-C---CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC---CCeEEEEEcccC
Q 009993          278 WV--YGLAPHDTTVASTS-G---SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE---DGAIHMYEIIND  348 (520)
Q Consensus       278 ~v--~~~~~~~~~l~~~~-d---~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~---dg~i~iwd~~~~  348 (520)
                      .+  ..++|+|+.|+... +   ..|.+||+.+++......  ....+....|+|||+.|+..+.   ...|+++|+.++
T Consensus       328 ~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~--~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g  405 (428)
T PRK01029        328 NSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT--SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK  405 (428)
T ss_pred             CccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC--CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            32  34569999888765 2   469999999887654332  2345678899999998775433   346888888776


Q ss_pred             ccccceeeeeeecCCcCCEEEEEecC
Q 009993          349 CTEANVLLVATWIPHTGPVNSLAFEF  374 (520)
Q Consensus       349 ~~~~~~~~~~~~~~h~~~v~~l~~~~  374 (520)
                      .      . ..+....+.+...+|+|
T Consensus       406 ~------~-~~Lt~~~g~~~~p~Ws~  424 (428)
T PRK01029        406 K------T-RKIVIGSGEKRFPSWGA  424 (428)
T ss_pred             C------E-EEeecCCCcccCceecC
Confidence            2      2 12222334455566654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.69  E-value=5.6e-06  Score=77.18  Aligned_cols=197  Identities=14%  Similarity=0.096  Sum_probs=132.0

Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCcc-ccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEEC
Q 009993          187 IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEK-QNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDR  264 (520)
Q Consensus       187 v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~  264 (520)
                      ...+..||+.++. +..|.|.++|..+......++.-+.. ......+.....-....+. +|++++..|. |...+.+.
T Consensus       271 ~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~  348 (668)
T COG4946         271 PRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRP  348 (668)
T ss_pred             ccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECC
Confidence            3445577887765 34588999998877654444431111 1111122222222233344 7889888887 66777776


Q ss_pred             CCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CC-eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeE
Q 009993          265 ALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GS-DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI  340 (520)
Q Consensus       265 ~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~-~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i  340 (520)
                      ..+-.++ +.+...|.-..  .+++-++.|. || .+-|+|.++++..+..  +.-+.|.++..+|+|++++++.....|
T Consensus       349 ~~~~~iq-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e--~~lg~I~av~vs~dGK~~vvaNdr~el  425 (668)
T COG4946         349 WDGYSIQ-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE--KDLGNIEAVKVSPDGKKVVVANDRFEL  425 (668)
T ss_pred             CCCeeEE-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee--CCccceEEEEEcCCCcEEEEEcCceEE
Confidence            5554433 33445555433  5566677777 76 8999999998765544  367889999999999999999999999


Q ss_pred             EEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCC----cEEEEeCCcc
Q 009993          341 HMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDG----KLSLIDVRKL  394 (520)
Q Consensus       341 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg----~i~vwd~~~~  394 (520)
                      -+.|+.++.      ....-....+-|+.+.|+|  +++|-+--+|    .|+++|+.+.
T Consensus       426 ~vididngn------v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~  479 (668)
T COG4946         426 WVIDIDNGN------VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG  479 (668)
T ss_pred             EEEEecCCC------eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence            999999983      3222234567899999987  5888776665    6889999874

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.69  E-value=3.9e-07  Score=82.99  Aligned_cols=152  Identities=16%  Similarity=0.166  Sum_probs=103.3

Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEECCCCcE----EEEe--CCCCceEEEEecCCCEEEEEe---CCCcEEEEEcccCcc
Q 009993          146 LTVFVLASAKLLFTSGYDSIVRMWHLEDGFS----IASS--KPLGCTIRAVAADKKLLVAGG---TDGFIHCWRAVEVLP  216 (520)
Q Consensus       146 ~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~----~~~~--~~~~~~v~~~~~~~~~l~sg~---~dg~i~vwd~~~~~~  216 (520)
                      ..+..++++++||.+..+....++++.....    +...  ......+..+..+ .....+.   ....+.+|....+  
T Consensus        66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s~~~~--  142 (390)
T KOG3914|consen   66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIRED-TSVLVADKAGDVYSFDILSADSG--  142 (390)
T ss_pred             cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeecc-ceEEEEeecCCceeeeeeccccc--
Confidence            3445677888999888888877777754432    1111  1122223233333 3333332   2344444443322  


Q ss_pred             eeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--eccCEEEEe-eCCCEEEE
Q 009993          217 HLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA-PHDTTVAS  291 (520)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~-~~~~~l~~  291 (520)
                                  ....+.||-..++.+++  |+..++++..|..|++-.......+..+-  |...|..++ .++..|++
T Consensus       143 ------------~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS  210 (390)
T KOG3914|consen  143 ------------RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLS  210 (390)
T ss_pred             ------------CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeee
Confidence                        34455689999999999  88999999999999998887666666553  999999999 66677788


Q ss_pred             Ec-CCeEEEEECCCCeeeEEee
Q 009993          292 TS-GSDVYIWDTNSGCLLTVVN  312 (520)
Q Consensus       292 ~~-d~~i~iwd~~~~~~~~~~~  312 (520)
                      ++ |+++++||+++|+.+..+.
T Consensus       211 ~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  211 GSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             cCCCCcEEEEecccCCcccccc
Confidence            77 9999999999999886654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.67  E-value=1.3e-05  Score=79.80  Aligned_cols=154  Identities=19%  Similarity=0.175  Sum_probs=95.6

Q ss_pred             EeccCCCCeEEEEE--cCCEEEEEecC---CeEEEEECCCCcEEEEeeeccCE--EEEeeCCCEEEEE-c-CC--eEEEE
Q 009993          232 RLWEHEGPITSLAL--DLTRIYSGSWD---MTVRVWDRALLKCLKVLRHSDWV--YGLAPHDTTVAST-S-GS--DVYIW  300 (520)
Q Consensus       232 ~~~~h~~~v~~l~~--~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~-~-d~--~i~iw  300 (520)
                      .+..+...+....|  +++.|+..+.+   ..|.+||+.+++..........+  ..++|+|+.++.. . ++  .|+++
T Consensus       193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~  272 (430)
T PRK00178        193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVM  272 (430)
T ss_pred             EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEE
Confidence            34456778888888  77888766543   36899999988765443333222  3456899887743 3 44  68999


Q ss_pred             ECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC-CC--eEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--C
Q 009993          301 DTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DG--AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P  375 (520)
Q Consensus       301 d~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~  375 (520)
                      |+.+++... +. .+........|+|+|+.++..+. +|  .|+++|+.++..    ..+ +..+  .......|+|  +
T Consensus       273 d~~~~~~~~-lt-~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~----~~l-t~~~--~~~~~~~~Spdg~  343 (430)
T PRK00178        273 DLASRQLSR-VT-NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA----ERV-TFVG--NYNARPRLSADGK  343 (430)
T ss_pred             ECCCCCeEE-cc-cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEe-ecCC--CCccceEECCCCC
Confidence            999876543 32 24455667889999998776554 34  467777766531    111 1222  2223456654  5


Q ss_pred             EEEEEeC-CC--cEEEEeCCcc
Q 009993          376 WLVSAAG-DG--KLSLIDVRKL  394 (520)
Q Consensus       376 ~l~s~s~-dg--~i~vwd~~~~  394 (520)
                      .|+..+. ++  .|.+||+.++
T Consensus       344 ~i~~~~~~~~~~~l~~~dl~tg  365 (430)
T PRK00178        344 TLVMVHRQDGNFHVAAQDLQRG  365 (430)
T ss_pred             EEEEEEccCCceEEEEEECCCC
Confidence            6666554 33  4788888764

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=7.1e-07  Score=88.36  Aligned_cols=189  Identities=19%  Similarity=0.112  Sum_probs=131.6

Q ss_pred             CCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeeccc
Q 009993          237 EGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAH  315 (520)
Q Consensus       237 ~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~  315 (520)
                      ...+.|.++.+..++-|+.+|.|++++....- ...+.|...    ..+|.++++|+ ||+|.|..+-+.+....+.  .
T Consensus        39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d--f  111 (846)
T KOG2066|consen   39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEITQYD--F  111 (846)
T ss_pred             hhHHHHHHhhcceeeeccccceEEEEecCCcc-ccccccccc----ccCCceEEEecCCCcEEEeeccCCccceeEe--c
Confidence            45677788899999999999999999975432 222333333    56899999999 9999999998888777664  6


Q ss_pred             ccceEEEEecCC-----CCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEe
Q 009993          316 VGNTKSLARSHT-----GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLID  390 (520)
Q Consensus       316 ~~~i~~l~~s~~-----~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd  390 (520)
                      ..++.+++++|+     .+.+++|+.-| +.++.-+--+..   ..+ .+....++|.++.|.++++|-++.+| |+|||
T Consensus       112 ~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk---~~v-~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd  185 (846)
T KOG2066|consen  112 KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK---DSV-VLSEGEGPIHSIKWRGNLIAWANDDG-VKVYD  185 (846)
T ss_pred             CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc---cce-eeecCccceEEEEecCcEEEEecCCC-cEEEe
Confidence            778999999997     46799999999 777764332111   112 45566889999999999999999887 99999


Q ss_pred             CCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEeCCc
Q 009993          391 VRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQ  452 (520)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~  452 (520)
                      ..+............            .... ...-..+.|.++ .|+. |+..+|+|..++.
T Consensus       186 ~~~~~~l~~i~~p~~------------~~R~-e~fpphl~W~~~~~LVI-GW~d~v~i~~I~~  234 (846)
T KOG2066|consen  186 TPTRQRLTNIPPPSQ------------SVRP-ELFPPHLHWQDEDRLVI-GWGDSVKICSIKK  234 (846)
T ss_pred             ccccceeeccCCCCC------------CCCc-ccCCCceEecCCCeEEE-ecCCeEEEEEEec
Confidence            988654433222211            1000 001112334444 4544 4445799998883

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.64  E-value=1.5e-07  Score=83.80  Aligned_cols=140  Identities=11%  Similarity=0.112  Sum_probs=105.9

Q ss_pred             CCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCC---
Q 009993          193 DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL---  267 (520)
Q Consensus       193 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~---  267 (520)
                      .+.. ++.+.+-.|-+-|++++..              ..+ ...+.|.++.|  .++.++.|..+|.|..+|++.+   
T Consensus       224 ~gyh-fs~G~sqqv~L~nvetg~~--------------qsf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG  287 (425)
T KOG2695|consen  224 MGYH-FSVGLSQQVLLTNVETGHQ--------------QSF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQG  287 (425)
T ss_pred             ceee-ecccccceeEEEEeecccc--------------ccc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccC
Confidence            3444 5555666777888887732              122 35677888888  5689999999999999999854   


Q ss_pred             --cEEEEeeeccCEEEEe---eCCCEEEEEc-CCeEEEEECCCCee---eEEeecccccceEE--EEecCCCCEEEEEeC
Q 009993          268 --KCLKVLRHSDWVYGLA---PHDTTVASTS-GSDVYIWDTNSGCL---LTVVNGAHVGNTKS--LARSHTGDFLFTGGE  336 (520)
Q Consensus       268 --~~~~~~~~~~~v~~~~---~~~~~l~~~~-d~~i~iwd~~~~~~---~~~~~~~~~~~i~~--l~~s~~~~~l~tg~~  336 (520)
                        .+...+-|+..|+++.   .++..|++.+ +|+|++||.+.-++   +..+. +|...-.-  +...+....+++++.
T Consensus       288 ~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe-GHvN~~a~l~~~v~~eeg~I~s~Gd  366 (425)
T KOG2695|consen  288 NGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE-GHVNLSAYLPAHVKEEEGSIFSVGD  366 (425)
T ss_pred             CCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee-cccccccccccccccccceEEEccC
Confidence              5677778999999988   5777777777 99999999987766   76666 57543322  234556778899999


Q ss_pred             CCeEEEEEcccCc
Q 009993          337 DGAIHMYEIINDC  349 (520)
Q Consensus       337 dg~i~iwd~~~~~  349 (520)
                      |...+||.++.+.
T Consensus       367 DcytRiWsl~~gh  379 (425)
T KOG2695|consen  367 DCYTRIWSLDSGH  379 (425)
T ss_pred             eeEEEEEecccCc
Confidence            9999999999883

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.63  E-value=0.00017  Score=67.60  Aligned_cols=165  Identities=16%  Similarity=0.163  Sum_probs=119.2

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCC-cEEEEEcccCcceeeeccCCccccceE
Q 009993          153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDG-FIHCWRAVEVLPHLFDISGSEKQNTQF  231 (520)
Q Consensus       153 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~  231 (520)
                      +|.+++..|. |...|.+...+-.+..-+.....-..+..+++.++.|..|| .+-++|..++              ...
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~--------------e~k  395 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG--------------EVK  395 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc--------------eEE
Confidence            5788888875 56777776666555443333333445556777899999999 8999998876              344


Q ss_pred             EeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CC----eEEEEE
Q 009993          232 RLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GS----DVYIWD  301 (520)
Q Consensus       232 ~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~----~i~iwd  301 (520)
                      .+...-+.|.++..  +|++++.+.....+.+.|++++.....-+ ..+-|+.+.  +++++++-+- +|    .|+++|
T Consensus       396 r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklyd  475 (668)
T COG4946         396 RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYD  475 (668)
T ss_pred             EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEe
Confidence            55566788999988  77889998888899999999987654433 556677766  8888998877 54    599999


Q ss_pred             CCCCeeeEEeecccccceEEEEecCCCCEEEEE
Q 009993          302 TNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG  334 (520)
Q Consensus       302 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg  334 (520)
                      +..++......  ..+.=.+-+|.|++++|.--
T Consensus       476 m~~~Kiy~vTT--~ta~DfsPaFD~d~ryLYfL  506 (668)
T COG4946         476 MDGGKIYDVTT--PTAYDFSPAFDPDGRYLYFL  506 (668)
T ss_pred             cCCCeEEEecC--CcccccCcccCCCCcEEEEE
Confidence            99987765543  23333466788999877643

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.63  E-value=3.3e-07  Score=89.53  Aligned_cols=235  Identities=14%  Similarity=0.092  Sum_probs=147.7

Q ss_pred             EEEEEccCC---CEEEEEeCCCeEEEEECCCC---cEEEEeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCcc
Q 009993          146 LTVFVLASA---KLLFTSGYDSIVRMWHLEDG---FSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVLP  216 (520)
Q Consensus       146 ~~l~~~~~~---~~l~sgs~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~  216 (520)
                      -.+.|+|..   ..+++.+ ...-.+|++...   .....+.+|+..++.+.   .....+++++.|..+..||+++...
T Consensus        71 ad~qws~h~a~~~wiVsts-~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~  149 (1081)
T KOG0309|consen   71 ADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR  149 (1081)
T ss_pred             cceecccCCCCceeEEecC-cchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence            344565532   2344443 445668887532   22334578998898887   3456899999999999999987643


Q ss_pred             eeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCc-EEEEee-eccCEEEEee----CCC
Q 009993          217 HLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLK-CLKVLR-HSDWVYGLAP----HDT  287 (520)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~-~~~~v~~~~~----~~~  287 (520)
                                  .......-...-..++|   +++.++ .+....|++||.+.+. .+..++ |...|+.+..    .+.
T Consensus       150 ------------p~ys~~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~  216 (1081)
T KOG0309|consen  150 ------------PFYSTSSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSE  216 (1081)
T ss_pred             ------------ceeeeecccccCceeeecccCcchhh-hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhh
Confidence                        33333333445556777   455554 4555789999998764 445554 6666666662    334


Q ss_pred             EEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEE--EeCCCeEEEEEcccCccc----cceeeeeeec
Q 009993          288 TVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT--GGEDGAIHMYEIINDCTE----ANVLLVATWI  361 (520)
Q Consensus       288 ~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~t--g~~dg~i~iwd~~~~~~~----~~~~~~~~~~  361 (520)
                      .+-+..|++|+.||................+|..-.+.|=|+-.++  .-.+..+.+++-++....    ....++.++.
T Consensus       217 ~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~  296 (1081)
T KOG0309|consen  217 IMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFV  296 (1081)
T ss_pred             hcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeec
Confidence            4444449999999987654332222234567777777775543222  111224555544433221    1236799999


Q ss_pred             CCcCCEEEEEec------C------CEEEEEeCCCcEEEEeCCcc
Q 009993          362 PHTGPVNSLAFE------F------PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       362 ~h~~~v~~l~~~------~------~~l~s~s~dg~i~vwd~~~~  394 (520)
                      ||.+.|....|-      +      -.|++=+.|..+++|-+.+.
T Consensus       297 GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  297 GHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             CcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence            999998777771      1      27999999999999998753

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.60  E-value=2.5e-06  Score=75.10  Aligned_cols=245  Identities=14%  Similarity=0.209  Sum_probs=145.6

Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc-----EEEEeCCCCc------------eEEE---EecC-CCEEEE
Q 009993          141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF-----SIASSKPLGC------------TIRA---VAAD-KKLLVA  199 (520)
Q Consensus       141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~-----~~~~~~~~~~------------~v~~---~~~~-~~~l~s  199 (520)
                      ..+.|+++.|...|.+|++|...|.|.+|.-+...     ....+++|..            .|.+   +.+. ...++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            35679999999999999999999999999865432     2233555542            1222   2232 335667


Q ss_pred             EeCCCcEEEEEcccCcceeee-----------ccC-------------Cccc-----cce-EEeccCCCCeEEEEEcC--
Q 009993          200 GGTDGFIHCWRAVEVLPHLFD-----------ISG-------------SEKQ-----NTQ-FRLWEHEGPITSLALDL--  247 (520)
Q Consensus       200 g~~dg~i~vwd~~~~~~~~~~-----------~~~-------------~~~~-----~~~-~~~~~h~~~v~~l~~~~--  247 (520)
                      .+.|.+|++|.+......+..           ..+             +...     .+. .....|.-.|.++.++.  
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            788999999988654221100           000             0000     001 11145777888999933  


Q ss_pred             CEEEEEecCCeEEEEECCCCcEEEEe---e-e-----ccCEEEEe--e--CCCEEEEEcCCeEEEEECCCCee------e
Q 009993          248 TRIYSGSWDMTVRVWDRALLKCLKVL---R-H-----SDWVYGLA--P--HDTTVASTSGSDVYIWDTNSGCL------L  308 (520)
Q Consensus       248 ~~l~s~s~dg~v~iwd~~~~~~~~~~---~-~-----~~~v~~~~--~--~~~~l~~~~d~~i~iwd~~~~~~------~  308 (520)
                      ..+++ +.|=.|.+|+++-......+   . |     ...|++..  |  ...++++.+.|.|++-|++....      +
T Consensus       185 et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 ETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             heeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            44554 45678999998643221111   1 1     12233333  2  23345556689999999984321      1


Q ss_pred             EE---------eecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCc------------CCE
Q 009993          309 TV---------VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT------------GPV  367 (520)
Q Consensus       309 ~~---------~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~------------~~v  367 (520)
                      ..         +..+-...|..+.|+++|+++++-+ --++++||++...     .++.+..-|.            ..|
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k-----~pikTi~~h~~l~~~l~d~YEnDai  337 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAK-----NPIKTIPMHCDLMDELNDVYENDAI  337 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEeccccc-----CCceeechHHHHHHHHHhhhhccce
Confidence            00         1112345688899999999988754 3579999998875     3455543332            122


Q ss_pred             ---EEEEecC--CEEEEEeCCCcEEEEeCC
Q 009993          368 ---NSLAFEF--PWLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       368 ---~~l~~~~--~~l~s~s~dg~i~vwd~~  392 (520)
                         ..+.|++  ..+++|+.....-++-..
T Consensus       338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         338 FDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             eeeEEEEecCCcccccccccccceeeeccc
Confidence               2345544  578888888777777644

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.59  E-value=2.5e-05  Score=77.70  Aligned_cols=153  Identities=16%  Similarity=0.137  Sum_probs=90.8

Q ss_pred             eccCCCCeEEEEE--cCCEEEEEecC-C--eEEEEECCCCcEEEEeeeccC--EEEEeeCCCEEEEEc--CC--eEEEEE
Q 009993          233 LWEHEGPITSLAL--DLTRIYSGSWD-M--TVRVWDRALLKCLKVLRHSDW--VYGLAPHDTTVASTS--GS--DVYIWD  301 (520)
Q Consensus       233 ~~~h~~~v~~l~~--~~~~l~s~s~d-g--~v~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~l~~~~--d~--~i~iwd  301 (520)
                      +..+...+.+..|  |++.|+..+.+ +  .|.+||+.+++..........  -..++|+++.++...  ++  .|+++|
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d  292 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD  292 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence            3445667788888  77777766543 2  588999988765433222222  234569999877543  45  488889


Q ss_pred             CCCCeeeEEeecccccceEEEEecCCCCEEEEEeC-CCe--EEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CE
Q 009993          302 TNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DGA--IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PW  376 (520)
Q Consensus       302 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~  376 (520)
                      +.+++... +. .+.......+|+|||+.|+..+. ++.  |+++|+.++..    ..+ ++.++  ......|+|  ++
T Consensus       293 l~tg~~~~-lt-~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~----~~L-t~~g~--~~~~~~~SpDG~~  363 (448)
T PRK04792        293 IATKALTR-IT-RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV----SRL-TFEGE--QNLGGSITPDGRS  363 (448)
T ss_pred             CCCCCeEE-Cc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEE-ecCCC--CCcCeeECCCCCE
Confidence            98876543 32 24455677899999998876554 444  66667665521    111 12222  223456755  56


Q ss_pred             EEEEeC-CCc--EEEEeCCcc
Q 009993          377 LVSAAG-DGK--LSLIDVRKL  394 (520)
Q Consensus       377 l~s~s~-dg~--i~vwd~~~~  394 (520)
                      |+..+. ++.  |.++|+.++
T Consensus       364 l~~~~~~~g~~~I~~~dl~~g  384 (448)
T PRK04792        364 MIMVNRTNGKFNIARQDLETG  384 (448)
T ss_pred             EEEEEecCCceEEEEEECCCC
Confidence            655544 444  455666553

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.59  E-value=5e-08  Score=61.00  Aligned_cols=40  Identities=35%  Similarity=0.514  Sum_probs=38.3

Q ss_pred             CCHHHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhh
Q 009993           67 LPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKE  106 (520)
Q Consensus        67 LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~  106 (520)
                      ||+|++.+||.||++.++.++++|||.|+.++.++.+|+.
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            7999999999999999999999999999999999999874

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.59  E-value=1.9e-07  Score=83.18  Aligned_cols=140  Identities=14%  Similarity=0.107  Sum_probs=105.9

Q ss_pred             EEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCC-----eeeEEeecccccceEEE
Q 009993          251 YSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSG-----CLLTVVNGAHVGNTKSL  322 (520)
Q Consensus       251 ~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~-----~~~~~~~~~~~~~i~~l  322 (520)
                      ++.+.+..|-+-|++++.... +...+.|.++.  ..+++++.|. +|.|..+|++.+     .+...+.  |.+.|+++
T Consensus       228 fs~G~sqqv~L~nvetg~~qs-f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly--h~Ssvtsl  304 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQS-FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY--HDSSVTSL  304 (425)
T ss_pred             ecccccceeEEEEeecccccc-cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE--cCcchhhh
Confidence            666677788899998875433 33555666665  4578888888 999999999865     4455553  99999999


Q ss_pred             EecC-CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe--c--CCEEEEEeCCCcEEEEeCCcccc
Q 009993          323 ARSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--E--FPWLVSAAGDGKLSLIDVRKLLR  396 (520)
Q Consensus       323 ~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~--~~~l~s~s~dg~i~vwd~~~~~~  396 (520)
                      ..-. ++.+|++.+.+|+|++||.+.-+..   +-+.++.+|...-.-+-+  +  ...+++++.|...+||.++.+..
T Consensus       305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~---~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL  380 (425)
T KOG2695|consen  305 QILQFSQQKLMASDMTGKIKLYDLRATKCK---KSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL  380 (425)
T ss_pred             hhhccccceEeeccCcCceeEeeehhhhcc---cceeeeecccccccccccccccccceEEEccCeeEEEEEecccCce
Confidence            8766 7889999999999999999887211   238888888765444444  2  36899999999999999997543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.57  E-value=1.3e-06  Score=85.18  Aligned_cols=202  Identities=10%  Similarity=0.150  Sum_probs=129.0

Q ss_pred             EEecCCCEEEEEeCCCcEEEEEcccCcceeeec--cCCccccceEEeccCCCCeEEEEEc--CCEEEEEecCCeEEEEEC
Q 009993          189 AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDI--SGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSWDMTVRVWDR  264 (520)
Q Consensus       189 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~v~iwd~  264 (520)
                      .+..+..+++.|+.||.++|..+.+.....-..  ........-..+.||++.|.-+.|+  ...|-+...+|.|.+|-+
T Consensus        21 ~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWml  100 (1189)
T KOG2041|consen   21 EWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWML  100 (1189)
T ss_pred             EEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEee
Confidence            344678899999999999999887754322211  1223344556788999999999994  356888889999999988


Q ss_pred             CCCcEEEEe---eeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeE-EeecccccceEEEEecCCCCEEEEEeCC
Q 009993          265 ALLKCLKVL---RHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLT-VVNGAHVGNTKSLARSHTGDFLFTGGED  337 (520)
Q Consensus       265 ~~~~~~~~~---~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~-~~~~~~~~~i~~l~~s~~~~~l~tg~~d  337 (520)
                      -.+.-....   +..+.|.+++  .+|..+.... ||.|.+=.++..+... .+   .......+.|++|.+.+..+-.+
T Consensus       101 ykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL---kg~~l~hv~ws~D~~~~Lf~~an  177 (1189)
T KOG2041|consen  101 YKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL---KGQLLAHVLWSEDLEQALFKKAN  177 (1189)
T ss_pred             ecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc---chheccceeecccHHHHHhhhcC
Confidence            766433222   1445566666  5677776666 7776665554432211 11   12234467899999988888899


Q ss_pred             CeEEEEEcccCcccc-ceee----eeeecCCcCCEEEEEec----------CCEEEEEeCCCcEEEEeCCc
Q 009993          338 GAIHMYEIINDCTEA-NVLL----VATWIPHTGPVNSLAFE----------FPWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       338 g~i~iwd~~~~~~~~-~~~~----~~~~~~h~~~v~~l~~~----------~~~l~s~s~dg~i~vwd~~~  393 (520)
                      |.+++||....-... ...+    ...+......|..+.|.          ...|+.+-.+|.+.|-.-.+
T Consensus       178 ge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN  248 (1189)
T KOG2041|consen  178 GETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN  248 (1189)
T ss_pred             CcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC
Confidence            999999976542100 0011    11111122235566662          15899999999988865544

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.55  E-value=0.00064  Score=61.99  Aligned_cols=206  Identities=14%  Similarity=0.032  Sum_probs=125.8

Q ss_pred             EEEEcc-CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCc
Q 009993          147 TVFVLA-SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE  225 (520)
Q Consensus       147 ~l~~~~-~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~  225 (520)
                      +..|.+ ++.++++--..+.|..|+..++......... ..-..+...+..++.+..++ +.++|..++...        
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~--------   73 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVT--------   73 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEEEEEETTC-EEEEETTTTEEE--------
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCCEEEEEEcCc-eEEEecCCCcEE--------
Confidence            567887 6777777778899999999887654322222 22233442345566666554 455588776321        


Q ss_pred             cccceEEec--c-CCCCeEEEEE--cCCEEEEEecC--------CeEEEEECCCCcEEEEeeeccCEEEE--eeCCCEEE
Q 009993          226 KQNTQFRLW--E-HEGPITSLAL--DLTRIYSGSWD--------MTVRVWDRALLKCLKVLRHSDWVYGL--APHDTTVA  290 (520)
Q Consensus       226 ~~~~~~~~~--~-h~~~v~~l~~--~~~~l~s~s~d--------g~v~iwd~~~~~~~~~~~~~~~v~~~--~~~~~~l~  290 (520)
                         ......  . .....+.+++  +|+..++....        |.|..++.. ++.......-...+.+  +++++.|+
T Consensus        74 ---~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~ly  149 (246)
T PF08450_consen   74 ---VLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLY  149 (246)
T ss_dssp             ---EEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred             ---EEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchhee
Confidence               222221  1 3456778888  55655554433        567777877 5554444444444454  48888776


Q ss_pred             EEc--CCeEEEEECCCCee----eEEeec--ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecC
Q 009993          291 STS--GSDVYIWDTNSGCL----LTVVNG--AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP  362 (520)
Q Consensus       291 ~~~--d~~i~iwd~~~~~~----~~~~~~--~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  362 (520)
                      .+.  .+.|..+++.....    ...+..  ...+..-.+++..+|++.++....+.|.++|.+ +      +.+..+.-
T Consensus       150 v~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G------~~~~~i~~  222 (246)
T PF08450_consen  150 VADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G------KLLREIEL  222 (246)
T ss_dssp             EEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S------CEEEEEE-
T ss_pred             ecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c------cEEEEEcC
Confidence            554  68899999863221    122211  112347789999999988888889999999987 5      34444444


Q ss_pred             CcCCEEEEEec
Q 009993          363 HTGPVNSLAFE  373 (520)
Q Consensus       363 h~~~v~~l~~~  373 (520)
                      ....+++++|.
T Consensus       223 p~~~~t~~~fg  233 (246)
T PF08450_consen  223 PVPRPTNCAFG  233 (246)
T ss_dssp             SSSSEEEEEEE
T ss_pred             CCCCEEEEEEE
Confidence            44588999993

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.54  E-value=3.4e-07  Score=56.42  Aligned_cols=38  Identities=29%  Similarity=0.551  Sum_probs=34.9

Q ss_pred             eeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEE
Q 009993          306 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE  344 (520)
Q Consensus       306 ~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd  344 (520)
                      +++..+. +|.+.|++++|+|++.+|++|+.|+.|++||
T Consensus         2 ~~~~~~~-~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFR-GHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEE-SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEc-CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            5667776 7999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=4.9e-06  Score=82.63  Aligned_cols=182  Identities=14%  Similarity=0.118  Sum_probs=129.1

Q ss_pred             cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeec
Q 009993          142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDI  221 (520)
Q Consensus       142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  221 (520)
                      .+.++|++++  +++++-|+.+|.|++.+.... . .+...|...    ..+|.++++|+.||+|.|-.+-+...     
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~-----  105 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDE-----  105 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc----ccCCceEEEecCCCcEEEeeccCCcc-----
Confidence            4566777775  789999999999999997533 2 333344333    57899999999999999988766531     


Q ss_pred             cCCccccceEEeccCCCCeEEEEEcC-------CEEEEEecCCeEEEEECC---CCcEEEEeeeccCEEEEeeCCCEEEE
Q 009993          222 SGSEKQNTQFRLWEHEGPITSLALDL-------TRIYSGSWDMTVRVWDRA---LLKCLKVLRHSDWVYGLAPHDTTVAS  291 (520)
Q Consensus       222 ~~~~~~~~~~~~~~h~~~v~~l~~~~-------~~l~s~s~dg~v~iwd~~---~~~~~~~~~~~~~v~~~~~~~~~l~~  291 (520)
                               ........++.++++++       +.+++|+.-| +.++.-.   ....+..-...++|.++...|++++=
T Consensus       106 ---------~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAW  175 (846)
T KOG2066|consen  106 ---------ITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAW  175 (846)
T ss_pred             ---------ceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEE
Confidence                     11223457888888855       4689999888 7776532   11222112278899999999999999


Q ss_pred             EcCCeEEEEECCCCeeeEEeeccccc-----ceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993          292 TSGSDVYIWDTNSGCLLTVVNGAHVG-----NTKSLARSHTGDFLFTGGEDGAIHMYEIIND  348 (520)
Q Consensus       292 ~~d~~i~iwd~~~~~~~~~~~~~~~~-----~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~  348 (520)
                      ++|-.|++||+.+++.+..++..+..     -...+.|.++ ..|+.|- ..+|+|..++..
T Consensus       176 and~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW-~d~v~i~~I~~~  235 (846)
T KOG2066|consen  176 ANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGW-GDSVKICSIKKR  235 (846)
T ss_pred             ecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEec-CCeEEEEEEecc
Confidence            99999999999999988887754422     1235666654 4566664 446889888833

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.51  E-value=4.4e-08  Score=63.60  Aligned_cols=44  Identities=39%  Similarity=0.643  Sum_probs=38.4

Q ss_pred             ccCCCHHHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhhh
Q 009993           64 ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEF  107 (520)
Q Consensus        64 ~~~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~~  107 (520)
                      +..||.|++.+||.||++.++.++++||+.|+.++.+..+|...
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~   46 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI   46 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence            67899999999999999999999999999999999999998763

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.51  E-value=1.2e-06  Score=77.10  Aligned_cols=278  Identities=15%  Similarity=0.161  Sum_probs=153.3

Q ss_pred             eEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccC------------CCCeEEEEE--cC--
Q 009993          186 TIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH------------EGPITSLAL--DL--  247 (520)
Q Consensus       186 ~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h------------~~~v~~l~~--~~--  247 (520)
                      .|+++.  ..|.++++|...|.|.++.-.....+-+        +....+++|            ...|..+.|  ++  
T Consensus        28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~cey--------kf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r   99 (460)
T COG5170          28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEY--------KFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR   99 (460)
T ss_pred             eeeEEEeccccceEeecCCCceEEEeecccccccch--------hhhhhhcccccchhhhhhccHHHHhhheeeecCCCc
Confidence            344544  6678999999999999997544321110        011112233            345777788  22  


Q ss_pred             CEEEEEecCCeEEEEECCCCcEEEEee----------eccCEEEEe----e---CCCEEEEEcCCeEEEEECCCCeeeEE
Q 009993          248 TRIYSGSWDMTVRVWDRALLKCLKVLR----------HSDWVYGLA----P---HDTTVASTSGSDVYIWDTNSGCLLTV  310 (520)
Q Consensus       248 ~~l~s~s~dg~v~iwd~~~~~~~~~~~----------~~~~v~~~~----~---~~~~l~~~~d~~i~iwd~~~~~~~~~  310 (520)
                      +.++..+.|++|++|.+........-.          ..+++++..    |   ....++++.             +.+.
T Consensus       100 ~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~-------------p~rv  166 (460)
T COG5170         100 NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK-------------PCRV  166 (460)
T ss_pred             ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEec-------------ccee
Confidence            457777889999999986542211111          122333221    0   011111111             1222


Q ss_pred             eecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCC-----cCCEEEEEecC---CEEEEEeC
Q 009993          311 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH-----TGPVNSLAFEF---PWLVSAAG  382 (520)
Q Consensus       311 ~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~~---~~l~s~s~  382 (520)
                      ....|...++++.|..|...++++ .|=.|.+|++.-....   ..+..+.+|     +..|++..|+|   ..+.-.+.
T Consensus       167 yaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~s---FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS  242 (460)
T COG5170         167 YANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGS---FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS  242 (460)
T ss_pred             ccccceeEeeeeeecCchheeeec-cceeeeeccccccCCc---eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC
Confidence            335788899999999988888766 6778999998655321   223334444     34688889987   57888888


Q ss_pred             CCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEec--CCEEEEecCCCeEEEEeCCchHhHHHHh
Q 009993          383 DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQAFEIERRA  460 (520)
Q Consensus       383 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~~~~~~~~~~  460 (520)
                      .|.|++-|++..........   ......-......+.+-..++..+.|.  ++++++-+. -+|+|||+......-...
T Consensus       243 kG~Ikl~DlRq~alcdn~~k---lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi  318 (460)
T COG5170         243 KGEIKLNDLRQSALCDNSKK---LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTI  318 (460)
T ss_pred             CCcEEehhhhhhhhccCchh---hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceee
Confidence            99999999985321110000   000000001111223333445555554  457777665 589999998765432221


Q ss_pred             hhhccc------ccchhhhhccceeeeccCCCcccccc
Q 009993          461 RALRGI------RLENRMRRRKLQTEMSSKGGRTDQCS  492 (520)
Q Consensus       461 ~~~~~~------~~~~~~~~~~~~~~~s~~g~~~~~~s  492 (520)
                      +.....      ..+...--.+..+.||-|.+...+.|
T Consensus       319 ~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgs  356 (460)
T COG5170         319 PMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGS  356 (460)
T ss_pred             chHHHHHHHHHhhhhccceeeeEEEEecCCcccccccc
Confidence            111100      01112222356788888888777754

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.50  E-value=7.6e-05  Score=73.20  Aligned_cols=188  Identities=12%  Similarity=0.013  Sum_probs=113.9

Q ss_pred             cEEEEEEccCCCE-EEEEeC---CCeEEEEECCCCcEEEEeCCC-CceEEEEecCCCEEEE-EeCC--CcEEEEEcccCc
Q 009993          144 AVLTVFVLASAKL-LFTSGY---DSIVRMWHLEDGFSIASSKPL-GCTIRAVAADKKLLVA-GGTD--GFIHCWRAVEVL  215 (520)
Q Consensus       144 ~V~~l~~~~~~~~-l~sgs~---dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~s-g~~d--g~i~vwd~~~~~  215 (520)
                      .+..-.|+|||+. ++..+.   +..|.++|+.+++........ ......++|||+.++. .+.+  ..|.++|+.++.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            6778999999984 654443   356999999888765443322 2234568899987664 3334  456667765542


Q ss_pred             ceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec-CC--eEEEEECCCCcEEEEeeeccCEEEEeeCCCEEE
Q 009993          216 PHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DM--TVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVA  290 (520)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg--~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~  290 (520)
                                    ...+..+........|  ||+.|+..+. .+  .|.+.|+.+++..+..........++|+|+.++
T Consensus       269 --------------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia  334 (419)
T PRK04043        269 --------------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIV  334 (419)
T ss_pred             --------------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEE
Confidence                          1122222222223346  7777666553 23  688888888776444332222346779999887


Q ss_pred             EEc-C---------CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCC-C--eEEEEEcccC
Q 009993          291 STS-G---------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-G--AIHMYEIIND  348 (520)
Q Consensus       291 ~~~-d---------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d-g--~i~iwd~~~~  348 (520)
                      ... .         ..|.+.|+.++... .+...  .......|+|||+.++....+ +  .+.+.++...
T Consensus       335 ~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~--~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        335 YSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN--GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             EEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC--CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence            765 3         26888899888653 33321  233357899999987765443 2  3556666544

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.50  E-value=0.00022  Score=61.75  Aligned_cols=273  Identities=14%  Similarity=0.126  Sum_probs=136.6

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEeCCC-CceEEE-EecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccce
Q 009993          153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPL-GCTIRA-VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQ  230 (520)
Q Consensus       153 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~-~~~v~~-~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  230 (520)
                      -|++++.|.+.|.+++-+..+|.....+..- ...+.+ +.+++..+..|+.|+..+..|..+..             .+
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~-------------cV  128 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG-------------CV  128 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccc-------------eE
Confidence            3778999999999999999999877766532 233333 34899999999999999999987643             22


Q ss_pred             EEeccCCCCeE--EEEEcCCEEEEEecCCeEEEEECCCCc--EEEEeeeccCEEEE-eeCCCEEEEEc-CCeEEEEECCC
Q 009993          231 FRLWEHEGPIT--SLALDLTRIYSGSWDMTVRVWDRALLK--CLKVLRHSDWVYGL-APHDTTVASTS-GSDVYIWDTNS  304 (520)
Q Consensus       231 ~~~~~h~~~v~--~l~~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~v~~~-~~~~~~l~~~~-d~~i~iwd~~~  304 (520)
                      .+.+-..+.-.  +++.-...|+.+...|.|.--...+..  .+.......++.+- ..-+..+..+. ||.+.-+| ..
T Consensus       129 ykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~-~s  207 (354)
T KOG4649|consen  129 YKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFD-ES  207 (354)
T ss_pred             EecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEc-CC
Confidence            22211111111  122222345555555655544444331  11111223333322 12223333333 77777777 55


Q ss_pred             CeeeEEeecccccceEE-EEec-CCCCEEEEEeCCCeE--------EEEEcccCcccc-ceeeeeeecCCcCCEEEEEec
Q 009993          305 GCLLTVVNGAHVGNTKS-LARS-HTGDFLFTGGEDGAI--------HMYEIINDCTEA-NVLLVATWIPHTGPVNSLAFE  373 (520)
Q Consensus       305 ~~~~~~~~~~~~~~i~~-l~~s-~~~~~l~tg~~dg~i--------~iwd~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~  373 (520)
                      |+.+..+.  ..++|.. -+-+ |..+.+..+.++.-+        .+|..+.+.... ...+...+.-|.-.+.    .
T Consensus       208 G~qvwr~~--t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~l~F~~h~~~~S----~  281 (354)
T KOG4649|consen  208 GRQVWRPA--TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPKLRFDLHSPGIS----Y  281 (354)
T ss_pred             CcEEEeec--CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcccceeccCCCCc----c
Confidence            66665543  3333321 1111 333344444333222        244444431000 0000000111111100    1


Q ss_pred             CCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCch
Q 009993          374 FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       374 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~  453 (520)
                      +.+|..++.||.+.|.-.+..... ....+...+.+..++-...++   +.++.   . +.+|+.|+.|..|+-||+.+.
T Consensus       282 ~~ll~~~s~dgkv~il~~~~sl~~-~~s~~g~lq~~~~~el~~eIF---sSPvi---i-~grl~igcRDdYv~cldl~~~  353 (354)
T KOG4649|consen  282 PKLLRRSSGDGKVMILMTSKSLAE-ISSNGGELQNLEAIELSNEIF---SSPVI---I-DGRLLIGCRDDYVRCLDLDTW  353 (354)
T ss_pred             hhhhhhhcCCCcEEEEEecccccc-cccCCCccceEEEeecCcccc---cCCeE---E-ccEEEEEEccCeEEEEecccc
Confidence            457788899999998866543111 111222233333222222111   11211   1 246888999999999999864

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=1.3e-06  Score=80.71  Aligned_cols=264  Identities=14%  Similarity=0.130  Sum_probs=167.6

Q ss_pred             CCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec-CCe
Q 009993          183 LGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DMT  258 (520)
Q Consensus       183 ~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg~  258 (520)
                      |...|+.+. ...+++.+++.||.++.|.-..-          .....+..+..|.+.|.+++.  ++..+.|.+. |..
T Consensus         8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~i----------sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs   77 (558)
T KOG0882|consen    8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRI----------SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHS   77 (558)
T ss_pred             ccceeeeEeeehhheEEeeecchhhhhcCCCCc----------cceeehhhhHHHHHHHHhhhccccceeEeeccCcccc
Confidence            556666554 56779999999999999974321          111233445567777877776  7788888777 999


Q ss_pred             EEEEECCCCcEEEEee---eccCEEEEeeCC---CEEEEEc--CCeEEEEECCCCe-eeEEeecccccceEEEEecCCCC
Q 009993          259 VRVWDRALLKCLKVLR---HSDWVYGLAPHD---TTVASTS--GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTGD  329 (520)
Q Consensus       259 v~iwd~~~~~~~~~~~---~~~~v~~~~~~~---~~l~~~~--d~~i~iwd~~~~~-~~~~~~~~~~~~i~~l~~s~~~~  329 (520)
                      ++++|+++...+.-+.   .+..+..+...|   ..++++.  ++.+.++|-.... +...+..-|..+|..+.+.+.++
T Consensus        78 ~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D  157 (558)
T KOG0882|consen   78 VKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD  157 (558)
T ss_pred             eeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc
Confidence            9999998776654443   455555555333   2444444  6899999987654 44444456999999999999999


Q ss_pred             EEEEEeCCCeEEEEEcccC-ccc-----cce---eeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccC
Q 009993          330 FLFTGGEDGAIHMYEIIND-CTE-----ANV---LLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSG  398 (520)
Q Consensus       330 ~l~tg~~dg~i~iwd~~~~-~~~-----~~~---~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~  398 (520)
                      .+++....|.|.-|..... +.+     ...   ..+..+.......+++.|+|  ..+.+-+.|..|+++++.++....
T Consensus       158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq  237 (558)
T KOG0882|consen  158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ  237 (558)
T ss_pred             ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence            9999999999999998741 000     000   11112222345678888876  688888899999999999875443


Q ss_pred             CCCCCCce--------eeeeecCCCc-----ccccCcc---eeeEEEEecCCEEEEecCCCeEEEEeCCchHhHH
Q 009993          399 RPTSGKRV--------SRVIEVEPPQ-----RMLHGFE---CNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIE  457 (520)
Q Consensus       399 ~~~~~~~~--------~~~~~~~~~~-----~~~~~~~---~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~  457 (520)
                      ........        ..+..+.-..     +.+..|.   ..-..++-++++|+-|+-=| |++.++.++..++
T Consensus       238 eiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~r  311 (558)
T KOG0882|consen  238 EIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVR  311 (558)
T ss_pred             hhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEE
Confidence            22211100        0000000000     1111122   22334555566888887766 7888888765543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=1.5e-05  Score=72.99  Aligned_cols=237  Identities=11%  Similarity=0.154  Sum_probs=140.2

Q ss_pred             hhhhccccccEEEEEEccCCC-EEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEE
Q 009993          135 IDVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWR  210 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~-~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd  210 (520)
                      .+.+.+|...|..++|+|..+ ++..++.+..|+|.|+++...+..+..+ ..+.+++   .+.++|+.|...|.|.+||
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD  264 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD  264 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence            447889999999999999776 7889999999999999999888888777 4455544   4577899999999999999


Q ss_pred             cccCcceeeeccCCccccceEEeccCCCCeEEEEE--------cCCEEEEEecCCeEEEEECC----CCcEEEEeeeccC
Q 009993          211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--------DLTRIYSGSWDMTVRVWDRA----LLKCLKVLRHSDW  278 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--------~~~~l~s~s~dg~v~iwd~~----~~~~~~~~~~~~~  278 (520)
                      ++..+..+..+.+..          ...+|..++.        .+..++..+.+  +..|++.    ...++..+..++.
T Consensus       265 ~R~~~~~~~e~~a~~----------t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~  332 (463)
T KOG1645|consen  265 MRQPEGPLMELVANV----------TINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGI  332 (463)
T ss_pred             ccCCCchHhhhhhhh----------ccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcc
Confidence            977643222221111          1233444333        23444444433  4566543    2223333334555


Q ss_pred             EEEEeeCC--CEEEEEc--CCe------EE-EEECCCCeeeEEeeccc-ccceE------EEEecCCCCEEE-EEeCCCe
Q 009993          279 VYGLAPHD--TTVASTS--GSD------VY-IWDTNSGCLLTVVNGAH-VGNTK------SLARSHTGDFLF-TGGEDGA  339 (520)
Q Consensus       279 v~~~~~~~--~~l~~~~--d~~------i~-iwd~~~~~~~~~~~~~~-~~~i~------~l~~s~~~~~l~-tg~~dg~  339 (520)
                      ..++..++  +.++...  +.+      +- --|-.+|.++.....++ .+.-+      .+.-.++.++++ +|++.+.
T Consensus       333 cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~  412 (463)
T KOG1645|consen  333 CISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNE  412 (463)
T ss_pred             eeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcce
Confidence            65665332  4444333  211      11 12333444433332223 11111      111223445444 5666788


Q ss_pred             EEEEEcccCccccceeeeeeecCCcCCEEEEEec---C-CEEEEEeCCCcEEEEeCC
Q 009993          340 IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE---F-PWLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       340 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~-~~l~s~s~dg~i~vwd~~  392 (520)
                      +.+||..+.      ..++++.- ..+|..+...   + .+|++-.+ ..++|+..+
T Consensus       413 lil~D~~s~------evvQ~l~~-~epv~Dicp~~~n~~syLa~LTd-~~v~Iyk~e  461 (463)
T KOG1645|consen  413 LILQDPHSF------EVVQTLAL-SEPVLDICPNDTNGSSYLALLTD-DRVHIYKNE  461 (463)
T ss_pred             eEEeccchh------heeeeccc-CcceeecceeecCCcchhhheec-ceEEEEecC
Confidence            999999998      55666543 3688888773   2 46666654 468887654

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.44  E-value=5.6e-05  Score=74.35  Aligned_cols=158  Identities=17%  Similarity=0.172  Sum_probs=104.0

Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC--CCCc-eEEEEecCCCEEEEEeCCCcEEEEEcccCcce
Q 009993          141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK--PLGC-TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPH  217 (520)
Q Consensus       141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~--~~~~-~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~  217 (520)
                      |...|.--+++..+++++.|+.-|.+.+|+-..++....-.  .+.. .+.+++++..++|.|+..|.|.++-+..+.+.
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            34445555566679999999999999999987776543322  2322 33455688889999999999999987664321


Q ss_pred             eeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCC-----cEEEEeeeccCEEEEeeCCCEEE
Q 009993          218 LFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL-----KCLKVLRHSDWVYGLAPHDTTVA  290 (520)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~l~  290 (520)
                      ....       ....-..|...|++++|  ++..+++|...|+|..-.+.+.     .....+.....|..++.-..++.
T Consensus       112 ~~~~-------~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LL  184 (726)
T KOG3621|consen  112 DLDY-------VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLL  184 (726)
T ss_pred             ccee-------eccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceeh
Confidence            1110       00011237899999999  7788999999999999887762     11122236777888885555555


Q ss_pred             EEcCCeEEEEECCCC
Q 009993          291 STSGSDVYIWDTNSG  305 (520)
Q Consensus       291 ~~~d~~i~iwd~~~~  305 (520)
                      +++--...+++++.+
T Consensus       185 VStl~r~~Lc~tE~e  199 (726)
T KOG3621|consen  185 VSTLTRCILCQTEAE  199 (726)
T ss_pred             Hhhhhhhheeecchh
Confidence            555334445555544

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.40  E-value=9.6e-05  Score=72.99  Aligned_cols=198  Identities=12%  Similarity=-0.011  Sum_probs=106.7

Q ss_pred             CCCCeEEEEE--cCCE---EEEEecCC--eEEEEECCCCcEEEEeeecc--CEEEEeeCCCEEEEEc--CC--eE--EEE
Q 009993          236 HEGPITSLAL--DLTR---IYSGSWDM--TVRVWDRALLKCLKVLRHSD--WVYGLAPHDTTVASTS--GS--DV--YIW  300 (520)
Q Consensus       236 h~~~v~~l~~--~~~~---l~s~s~dg--~v~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~l~~~~--d~--~i--~iw  300 (520)
                      ....+.+-.|  ||+.   +++...+|  .|.+.++.+++........+  ....++|+|+.|+...  +|  .+  ..|
T Consensus       183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~  262 (428)
T PRK01029        183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSF  262 (428)
T ss_pred             CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEe
Confidence            3444555567  5543   23444443  57788888776544433222  2335669998888765  23  33  447


Q ss_pred             ECCCC--eeeEEeecccccceEEEEecCCCCEEEEEe-CCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--C
Q 009993          301 DTNSG--CLLTVVNGAHVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P  375 (520)
Q Consensus       301 d~~~~--~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~  375 (520)
                      ++..+  .....+.....+.....+|+|||+.|+..+ .+|...+|.+......   .....+..+...+....|+|  +
T Consensus       263 ~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g---~~~~~lt~~~~~~~~p~wSPDG~  339 (428)
T PRK01029        263 SLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG---QSPRLLTKKYRNSSCPAWSPDGK  339 (428)
T ss_pred             ecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc---cceEEeccCCCCccceeECCCCC
Confidence            77653  122233222233446789999999877655 4676555544321000   11233334445667788876  5


Q ss_pred             EEEEEeCC---CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEE-EecC--CCeEEEEe
Q 009993          376 WLVSAAGD---GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIV-CGGE--EGIVRIWN  449 (520)
Q Consensus       376 ~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-sg~~--Dg~v~iwd  449 (520)
                      .|+..+.+   ..|.+||+.++.....             .     ..........++++++.|+ ++..  .+.|++||
T Consensus       340 ~Laf~~~~~g~~~I~v~dl~~g~~~~L-------------t-----~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd  401 (428)
T PRK01029        340 KIAFCSVIKGVRQICVYDLATGRDYQL-------------T-----TSPENKESPSWAIDSLHLVYSAGNSNESELYLIS  401 (428)
T ss_pred             EEEEEEcCCCCcEEEEEECCCCCeEEc-------------c-----CCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence            66655443   4689999876421100             0     0001122345667777555 3332  35688888


Q ss_pred             CCchH
Q 009993          450 FSQAF  454 (520)
Q Consensus       450 ~~~~~  454 (520)
                      +..+.
T Consensus       402 l~~g~  406 (428)
T PRK01029        402 LITKK  406 (428)
T ss_pred             CCCCC
Confidence            87653

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=7.5e-06  Score=75.84  Aligned_cols=219  Identities=14%  Similarity=0.112  Sum_probs=139.1

Q ss_pred             cCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee----eccCEEEEe--eCCCEEEEEc--CCeEEEEECCCC
Q 009993          235 EHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR----HSDWVYGLA--PHDTTVASTS--GSDVYIWDTNSG  305 (520)
Q Consensus       235 ~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~----~~~~v~~~~--~~~~~l~~~~--d~~i~iwd~~~~  305 (520)
                      -|...|+.+.. -.+++++++.||.++.|--..-.-+....    |-..+.++.  .++.++.+.+  |..++++|+.+-
T Consensus         7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            47788887777 67899999999999999754322222222    556666555  6777777755  789999999876


Q ss_pred             eeeEEeecccccceEEEEecCCC--CEEE-EEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEE
Q 009993          306 CLLTVVNGAHVGNTKSLARSHTG--DFLF-TGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSA  380 (520)
Q Consensus       306 ~~~~~~~~~~~~~i~~l~~s~~~--~~l~-tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~  380 (520)
                      ..+..+........-+...+|..  ..++ +.-.+|.+.++|-.....    .....-.-|..+|.++.+.+  +.+++.
T Consensus        87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~----q~~~fkklH~sPV~~i~y~qa~Ds~vSi  162 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC----QDGYFKKLHFSPVKKIRYNQAGDSAVSI  162 (558)
T ss_pred             chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC----ccceecccccCceEEEEeeccccceeec
Confidence            65544432221111122223321  1333 344578999999776632    23444456999999999976  688888


Q ss_pred             eCCCcEEEEeCCcccccCCCCCC---CceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHH
Q 009993          381 AGDGKLSLIDVRKLLRSGRPTSG---KRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIE  457 (520)
Q Consensus       381 s~dg~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~  457 (520)
                      ...|.|.-|......+.......   +....+.....     .........+++++..+.+-+.|..|+++++.++..+.
T Consensus       163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K-----~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq  237 (558)
T KOG0882|consen  163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK-----AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ  237 (558)
T ss_pred             cccceeEeecCCCcccCccccccccccccchhhcccc-----cccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence            88899999998742111110000   00000111111     11223456788888899999999999999999998877


Q ss_pred             HHhhh
Q 009993          458 RRARA  462 (520)
Q Consensus       458 ~~~~~  462 (520)
                      .....
T Consensus       238 eiDE~  242 (558)
T KOG0882|consen  238 EIDEV  242 (558)
T ss_pred             hhhcc
Confidence            65443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.37  E-value=0.00021  Score=62.96  Aligned_cols=185  Identities=14%  Similarity=0.080  Sum_probs=101.6

Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCC-------CceEEEEe---cC-----CCEEEEEeCCCcEEEEE
Q 009993          146 LTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPL-------GCTIRAVA---AD-----KKLLVAGGTDGFIHCWR  210 (520)
Q Consensus       146 ~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~-------~~~v~~~~---~~-----~~~l~sg~~dg~i~vwd  210 (520)
                      .-++|+||+.+||.+...|+|+++|+... .+..+.+.       ...|..+.   ..     ...|++-..+|.++-|-
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~  125 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL  125 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence            56799999999999999999999998753 33333321       12333222   11     22566667778777776


Q ss_pred             cccCcceeeeccCCccccceEEecc-CCCCeEEEEEcC--CEEEEEec-CCeEEEEECCCCcEEEEeeeccCEEEEe---
Q 009993          211 AVEVLPHLFDISGSEKQNTQFRLWE-HEGPITSLALDL--TRIYSGSW-DMTVRVWDRALLKCLKVLRHSDWVYGLA---  283 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~--~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~~v~~~~---  283 (520)
                      +..+...      .-.....+.+.. +...|.++.+++  +.|+.|+. ...-..+.          .....+++..   
T Consensus       126 vs~gt~q------~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~----------a~~~GLtaWRiL~  189 (282)
T PF15492_consen  126 VSVGTNQ------GYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK----------ASSCGLTAWRILS  189 (282)
T ss_pred             EEcccCC------cceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc----------ccccCceEEEEcC
Confidence            5332110      011122333433 367899999955  45555543 22100000          0111122211   


Q ss_pred             --eCCCEEEEEcCC------eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993          284 --PHDTTVASTSGS------DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  348 (520)
Q Consensus       284 --~~~~~l~~~~d~------~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~  348 (520)
                        |.-..+....++      +-.+|.+-+...... .......|..|..||||..||+...+|.|.+|++..-
T Consensus       190 ~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~-~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  190 DSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSR-QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             CCCcEEEccccCccccccccccceeeccceeeeec-cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence              111221111111      112333222211111 1235678999999999999999999999999999876

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.36  E-value=3.3e-07  Score=91.33  Aligned_cols=188  Identities=10%  Similarity=0.108  Sum_probs=130.4

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCC--cEEEEE
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDG--FIHCWR  210 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg--~i~vwd  210 (520)
                      .++++.|+...+|++|+-+.++|+.|+..|.|+++++.+|........|+..++-+.  .+|..+++.+.-.  -..+|+
T Consensus      1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred             chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence            456788999999999999999999999999999999999999999999999999887  4677666655433  467898


Q ss_pred             cccCcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCCcEEEEee-------eccCEEE
Q 009993          211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLR-------HSDWVYG  281 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~-------~~~~v~~  281 (520)
                      +.+..            .....+    ..-.++.|..  ..-+.|+.-..+.+||++++..+.++-       .......
T Consensus      1174 ~~s~~------------~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1174 ASSTG------------GPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred             ccccc------------Cccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccc
Confidence            75421            122222    2234566622  222334444568999999988776632       1222333


Q ss_pred             EeeCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCc
Q 009993          282 LAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC  349 (520)
Q Consensus       282 ~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~  349 (520)
                      ++|++.+++-  ||  .+||.+..+.+..|.. .. .-..-.|+|.|..++.-++     |||+++..
T Consensus      1238 FsP~D~LIln--dG--vLWDvR~~~aIh~FD~-ft-~~~~G~FHP~g~eVIINSE-----IwD~RTF~ 1294 (1516)
T KOG1832|consen 1238 FSPCDTLILN--DG--VLWDVRIPEAIHRFDQ-FT-DYGGGGFHPSGNEVIINSE-----IWDMRTFK 1294 (1516)
T ss_pred             cCCCcceEee--Cc--eeeeeccHHHHhhhhh-he-ecccccccCCCceEEeech-----hhhhHHHH
Confidence            4466666553  22  5899998877777652 22 1223469999999887754     89999873

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.31  E-value=0.00063  Score=59.08  Aligned_cols=218  Identities=15%  Similarity=0.121  Sum_probs=121.9

Q ss_pred             EccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceE--EEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccc
Q 009993          150 VLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTI--RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQ  227 (520)
Q Consensus       150 ~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~  227 (520)
                      ..+++.++..|+.|++...-|..+..++...+-.+...  -++.+-...|+.+...|.+.--...++.            
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~------------  168 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYS------------  168 (354)
T ss_pred             EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCC------------
Confidence            45689999999999999999999988887765333221  1344544556666666666544433321            


Q ss_pred             cceEEeccC--CCCeEEE-EEcCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEE---Ee-eCCCEEEEEcCCe----
Q 009993          228 NTQFRLWEH--EGPITSL-ALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYG---LA-PHDTTVASTSGSD----  296 (520)
Q Consensus       228 ~~~~~~~~h--~~~v~~l-~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~---~~-~~~~~l~~~~d~~----  296 (520)
                        ...+..|  .++|.+- .+-+..+..+.-||.+.-+| ..|+.+..+...++|..   .+ |..+.+..+..+.    
T Consensus       169 --~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~  245 (354)
T KOG4649|consen  169 --STEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPATKGPIFMEPCESRPSCQQISLENENCFCAP  245 (354)
T ss_pred             --cceehhhhcCCccccCceeccceEEEEEeccEEEEEc-CCCcEEEeecCCCceecccccCCCcceEEEEecCCeEEEe
Confidence              1112212  2333322 12344556666777777777 56666666655555542   22 4444455444333    


Q ss_pred             -----EEEEECCCCeeeEEeecccccceEEEEec-C---CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCE
Q 009993          297 -----VYIWDTNSGCLLTVVNGAHVGNTKSLARS-H---TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPV  367 (520)
Q Consensus       297 -----i~iwd~~~~~~~~~~~~~~~~~i~~l~~s-~---~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v  367 (520)
                           -.+|..++|.........    -...+++ |   ..++|..++.||++.|.-.+..        +.....|.+.+
T Consensus       246 ~p~~ghL~w~~~~g~t~~vy~~p----~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~s--------l~~~~s~~g~l  313 (354)
T KOG4649|consen  246 LPIAGHLLWATQSGTTLHVYLSP----KLRFDLHSPGISYPKLLRRSSGDGKVMILMTSKS--------LAEISSNGGEL  313 (354)
T ss_pred             ccccceEEEEecCCcEEEEEeCc----ccceeccCCCCcchhhhhhhcCCCcEEEEEeccc--------ccccccCCCcc
Confidence                 334555544333222110    0112222 1   1356778889999888754433        33333444433


Q ss_pred             EEE---Ee------cC----CEEEEEeCCCcEEEEeCCcc
Q 009993          368 NSL---AF------EF----PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       368 ~~l---~~------~~----~~l~s~s~dg~i~vwd~~~~  394 (520)
                      ..+   ..      +|    .+|+.|+.|..|+-||+.+.
T Consensus       314 q~~~~~el~~eIFsSPvii~grl~igcRDdYv~cldl~~~  353 (354)
T KOG4649|consen  314 QNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLDLDTW  353 (354)
T ss_pred             ceEEEeecCcccccCCeEEccEEEEEEccCeEEEEecccc
Confidence            322   22      23    57899999999999999763

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.28  E-value=0.00013  Score=73.32  Aligned_cols=194  Identities=15%  Similarity=0.130  Sum_probs=126.2

Q ss_pred             cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCce-EEEEe--cCCCEEEEEeCCCc-----EEEEEcccCc
Q 009993          144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT-IRAVA--ADKKLLVAGGTDGF-----IHCWRAVEVL  215 (520)
Q Consensus       144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~-v~~~~--~~~~~l~sg~~dg~-----i~vwd~~~~~  215 (520)
                      .|+|  +++.+..++.|+.+|.|.+.+- .-+.+..++.+... +..+.  ...++|++.+.|+.     +++|+++...
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~  103 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD  103 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence            6666  5778999999999998877762 33444777777666 43343  33358888777754     8999986542


Q ss_pred             ceeeeccCCccccce--EEecc-----CCCCeEEEEE--cCCEEEEEecCCeEEEEECC--C--C-cEEEEeeeccCEEE
Q 009993          216 PHLFDISGSEKQNTQ--FRLWE-----HEGPITSLAL--DLTRIYSGSWDMTVRVWDRA--L--L-KCLKVLRHSDWVYG  281 (520)
Q Consensus       216 ~~~~~~~~~~~~~~~--~~~~~-----h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~--~--~-~~~~~~~~~~~v~~  281 (520)
                      .       ..+....  ..+.+     ...++.++++  +-..++.|-.||.|..+.-+  .  + +.........+|+.
T Consensus       104 ~-------n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITg  176 (933)
T KOG2114|consen  104 K-------NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITG  176 (933)
T ss_pred             C-------CCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCcee
Confidence            1       1111111  12222     2456777777  55779999999999988522  1  1 12222236788999


Q ss_pred             Ee--eCCCE-EEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993          282 LA--PHDTT-VASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  348 (520)
Q Consensus       282 ~~--~~~~~-l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~  348 (520)
                      +.  .++.. ++++.-..|.+|.+....+.......|+..+.|..+++....+++++ +..+.+|+....
T Consensus       177 L~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~  245 (933)
T KOG2114|consen  177 LALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGR  245 (933)
T ss_pred             eEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCc
Confidence            87  45554 56666788999998854434443346888999999988666455554 345999998766

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.27  E-value=0.0003  Score=70.93  Aligned_cols=188  Identities=13%  Similarity=0.092  Sum_probs=123.8

Q ss_pred             eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCC-eEEEEE-cC-CEEEEEecCC-----
Q 009993          186 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGP-ITSLAL-DL-TRIYSGSWDM-----  257 (520)
Q Consensus       186 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~-~~-~~l~s~s~dg-----  257 (520)
                      .+.++++.+..++.|+.+|.|.+.+-.              ......+..+... |..+.. ++ ++|++.+.|+     
T Consensus        27 ~isc~~s~~~~vvigt~~G~V~~Ln~s--------------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~   92 (933)
T KOG2114|consen   27 AISCCSSSTGSVVIGTADGRVVILNSS--------------FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPV   92 (933)
T ss_pred             ceeEEcCCCceEEEeeccccEEEeccc--------------ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCce
Confidence            788899999999999999999887632              2222444555555 555554 33 5788877765     


Q ss_pred             eEEEEECCC------CcEEEEe---ee-----ccCEEE--EeeCCCEEEEEc-CCeEEEEECCC---CeeeEEeeccccc
Q 009993          258 TVRVWDRAL------LKCLKVL---RH-----SDWVYG--LAPHDTTVASTS-GSDVYIWDTNS---GCLLTVVNGAHVG  317 (520)
Q Consensus       258 ~v~iwd~~~------~~~~~~~---~~-----~~~v~~--~~~~~~~l~~~~-d~~i~iwd~~~---~~~~~~~~~~~~~  317 (520)
                      .+++||++.      .+++...   .+     +.++.+  ++.+-+.+|+|- +|.|..+.-.-   ......+......
T Consensus        93 llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~  172 (933)
T KOG2114|consen   93 LLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKE  172 (933)
T ss_pred             EEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCC
Confidence            499999863      3444222   21     233444  446778888888 89998885321   1112222223467


Q ss_pred             ceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993          318 NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       318 ~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  393 (520)
                      +|+.+++..++..++-......|.+|.+....     .....+..|..+++|..+++  ..+++++.. .+.+|+...
T Consensus       173 pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-----p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~  244 (933)
T KOG2114|consen  173 PITGLALRSDGKSVLFVATTEQVMLYSLSGRT-----PSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDG  244 (933)
T ss_pred             CceeeEEecCCceeEEEEecceeEEEEecCCC-----cceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCC
Confidence            99999999888873333345679999998552     23555778888999999975  235555544 599999875

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.20  E-value=0.0023  Score=60.92  Aligned_cols=216  Identities=15%  Similarity=0.158  Sum_probs=126.7

Q ss_pred             eEEEEECCCCcEEEEeCC-CCceEEEEe----c-----CCCEEEEEeC----------CCcEEEEEcccCcceeeeccCC
Q 009993          165 IVRMWHLEDGFSIASSKP-LGCTIRAVA----A-----DKKLLVAGGT----------DGFIHCWRAVEVLPHLFDISGS  224 (520)
Q Consensus       165 ~v~vwd~~~~~~~~~~~~-~~~~v~~~~----~-----~~~~l~sg~~----------dg~i~vwd~~~~~~~~~~~~~~  224 (520)
                      .|++.|..+.+.+.++.- ....+.++.    .     ...++++|..          .|.|.++++.+...       .
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~-------~   75 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE-------N   75 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS----------
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc-------c
Confidence            578888877777765531 223333332    2     1467777653          28899999876300       0


Q ss_pred             ccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCc-EEEEee--eccCEEEEeeCCCEEEEEc-CCeEEEE
Q 009993          225 EKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLK-CLKVLR--HSDWVYGLAPHDTTVASTS-GSDVYIW  300 (520)
Q Consensus       225 ~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~--~~~~v~~~~~~~~~l~~~~-d~~i~iw  300 (520)
                      ...-.........++|++++.-+++++.+. ++.|.+|++...+ ....-.  ....+.++...++++++|. ...+.++
T Consensus        76 ~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~  154 (321)
T PF03178_consen   76 NFKLKLIHSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLL  154 (321)
T ss_dssp             --EEEEEEEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEE
T ss_pred             ceEEEEEEEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEE
Confidence            001112222345789999998565655555 4799999998877 444433  4557888888788888888 6777766


Q ss_pred             --ECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccc----c-ceeeeeeecCCcCCEEEE---
Q 009993          301 --DTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE----A-NVLLVATWIPHTGPVNSL---  370 (520)
Q Consensus       301 --d~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~----~-~~~~~~~~~~h~~~v~~l---  370 (520)
                        +....+....-.......++++.|-++++.++++..+|.+.++........    . .......+. ....|+++   
T Consensus       155 ~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~  233 (321)
T PF03178_consen  155 RYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRG  233 (321)
T ss_dssp             EEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE-
T ss_pred             EEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEE
Confidence              543332322222234556889999877789999999999999988642111    1 122222222 23467777   


Q ss_pred             EecC----------CEEEEEeCCCcEEEE
Q 009993          371 AFEF----------PWLVSAAGDGKLSLI  389 (520)
Q Consensus       371 ~~~~----------~~l~s~s~dg~i~vw  389 (520)
                      .+.+          ..++.++.+|.|.+.
T Consensus       234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  234 SLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             -SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EeeecCCCCcccccceEEEEecCCEEEEE
Confidence            3323          248888899998844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.18  E-value=0.00081  Score=63.85  Aligned_cols=127  Identities=13%  Similarity=0.126  Sum_probs=84.8

Q ss_pred             CeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc---CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEE
Q 009993          257 MTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS---GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFL  331 (520)
Q Consensus       257 g~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l  331 (520)
                      .++.+++++...+.-.....++|..+.  |.++.+++.+   +..+.++|++.. ....+   ....=+.+.|+|.++++
T Consensus       255 snLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~---Pe~~rNT~~fsp~~r~i  330 (561)
T COG5354         255 SNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF---PEQKRNTIFFSPHERYI  330 (561)
T ss_pred             ceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec---CCcccccccccCcccEE
Confidence            467888887444333334578888877  6777666544   688999999877 33333   33445678899999999


Q ss_pred             EEEeCC---CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeC------CCcEEEEeCCcc
Q 009993          332 FTGGED---GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG------DGKLSLIDVRKL  394 (520)
Q Consensus       332 ~tg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~------dg~i~vwd~~~~  394 (520)
                      +.++-|   |.|-+||....-     ..+..+.+..  .+-+.|+|  +++.+...      |..|+|||+...
T Consensus       331 l~agF~nl~gni~i~~~~~rf-----~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         331 LFAGFDNLQGNIEIFDPAGRF-----KVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             EEecCCccccceEEeccCCce-----EEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence            987765   679999987762     3333454433  33456765  45555433      889999999753

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.17  E-value=0.0052  Score=55.99  Aligned_cols=183  Identities=20%  Similarity=0.212  Sum_probs=113.9

Q ss_pred             Eec-CCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCC
Q 009993          190 VAA-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL  266 (520)
Q Consensus       190 ~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~  266 (520)
                      +.+ ++.++++-...+.|..|+..++...            ...+   .. ...+.+  .++.++.+..++ +.++|..+
T Consensus         7 ~d~~~g~l~~~D~~~~~i~~~~~~~~~~~------------~~~~---~~-~~G~~~~~~~g~l~v~~~~~-~~~~d~~~   69 (246)
T PF08450_consen    7 WDPRDGRLYWVDIPGGRIYRVDPDTGEVE------------VIDL---PG-PNGMAFDRPDGRLYVADSGG-IAVVDPDT   69 (246)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTTTEEE------------EEES---SS-EEEEEEECTTSEEEEEETTC-EEEEETTT
T ss_pred             EECCCCEEEEEEcCCCEEEEEECCCCeEE------------EEec---CC-CceEEEEccCCEEEEEEcCc-eEEEecCC
Confidence            444 5666666667888998988765321            1111   12 555566  357777777655 45559988


Q ss_pred             CcEEEEeee------ccCEEEEe--eCCCEEEEEc-C--------CeEEEEECCCCeeeEEeecccccceEEEEecCCCC
Q 009993          267 LKCLKVLRH------SDWVYGLA--PHDTTVASTS-G--------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD  329 (520)
Q Consensus       267 ~~~~~~~~~------~~~v~~~~--~~~~~l~~~~-d--------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~  329 (520)
                      ++.......      ....+.+.  ++|++.++.. .        |.|..++.. ++......  .....+.++|+|+++
T Consensus        70 g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~pNGi~~s~dg~  146 (246)
T PF08450_consen   70 GKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFPNGIAFSPDGK  146 (246)
T ss_dssp             TEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSEEEEEEETTSS
T ss_pred             CcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--CcccccceEECCcch
Confidence            866554442      22344444  7888777655 2        458888887 55444332  456678999999999


Q ss_pred             EEE-EEeCCCeEEEEEcccCcc-ccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCC
Q 009993          330 FLF-TGGEDGAIHMYEIINDCT-EANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       330 ~l~-tg~~dg~i~iwd~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~  392 (520)
                      .|+ +-+..+.|..|++..... .........+....+....++++.  +..++....+.|.++|..
T Consensus       147 ~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  147 TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred             heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence            765 566788899999875432 222222333333334578888864  566666678899999987

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.14  E-value=0.0029  Score=68.21  Aligned_cols=230  Identities=12%  Similarity=0.066  Sum_probs=137.6

Q ss_pred             cEEEEEEccCCCEEE--EEeCCC--eEEEEECCCCc---EEEEeC-----CCCceEEEEe--cCCCEEEEEeCCCcEEEE
Q 009993          144 AVLTVFVLASAKLLF--TSGYDS--IVRMWHLEDGF---SIASSK-----PLGCTIRAVA--ADKKLLVAGGTDGFIHCW  209 (520)
Q Consensus       144 ~V~~l~~~~~~~~l~--sgs~dg--~v~vwd~~~~~---~~~~~~-----~~~~~v~~~~--~~~~~l~sg~~dg~i~vw  209 (520)
                      .+...+|.+..+.++  ++....  .|.+-......   .+..+.     .....|.++.  ++...++.+..+|.|.+.
T Consensus        23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~  102 (928)
T PF04762_consen   23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILV  102 (928)
T ss_pred             ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEE
Confidence            556667776554333  332222  23443333222   333332     2345677777  788889999999999988


Q ss_pred             ----EcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEE-------------
Q 009993          210 ----RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCL-------------  270 (520)
Q Consensus       210 ----d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~-------------  270 (520)
                          +..+.              .......-...|.+++|  |+..|+..+.++++.+-+. +.+.+             
T Consensus       103 ~~~~~~~~~--------------~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~  167 (928)
T PF04762_consen  103 REDPDPDED--------------EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGES  167 (928)
T ss_pred             EccCCCCCc--------------eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCC
Confidence                43322              22223345678999999  6678888888888877542 11100             


Q ss_pred             -----------EEee-------------------------eccCEEEEe--eCCCEEEEEc-C------CeEEEEECCCC
Q 009993          271 -----------KVLR-------------------------HSDWVYGLA--PHDTTVASTS-G------SDVYIWDTNSG  305 (520)
Q Consensus       271 -----------~~~~-------------------------~~~~v~~~~--~~~~~l~~~~-d------~~i~iwd~~~~  305 (520)
                                 ..|.                         ..+.-..++  .||.++++.+ +      ..++||+-+ |
T Consensus       168 ~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G  246 (928)
T PF04762_consen  168 KHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-G  246 (928)
T ss_pred             ceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-c
Confidence                       0000                         011112233  7899998876 2      359999976 6


Q ss_pred             eeeEEeecccccceEEEEecCCCCEEEEEeC---CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEE
Q 009993          306 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGE---DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSA  380 (520)
Q Consensus       306 ~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~  380 (520)
                      .....-+ .-.+--.+++|-|.|+++|+.-.   ...|.+|.-+.-. ..  .....+......|..+.|+.  ..|+..
T Consensus       247 ~L~stSE-~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr-hg--eF~l~~~~~~~~v~~l~Wn~ds~iLAv~  322 (928)
T PF04762_consen  247 ELQSTSE-PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR-HG--EFTLRFDPEEEKVIELAWNSDSEILAVW  322 (928)
T ss_pred             eEEeccc-cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE-ee--eEecCCCCCCceeeEEEECCCCCEEEEE
Confidence            5544433 33444557899999999998754   3457777643331 11  12222234566899999965  677776


Q ss_pred             eCCCcEEEEeCCcc
Q 009993          381 AGDGKLSLIDVRKL  394 (520)
Q Consensus       381 s~dg~i~vwd~~~~  394 (520)
                      -.|. |.+|-..+.
T Consensus       323 ~~~~-vqLWt~~NY  335 (928)
T PF04762_consen  323 LEDR-VQLWTRSNY  335 (928)
T ss_pred             ecCC-ceEEEeeCC
Confidence            6555 999988764

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.11  E-value=0.0061  Score=61.82  Aligned_cols=186  Identities=13%  Similarity=0.030  Sum_probs=113.8

Q ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeCCCC-ceEE----------EEecCCCEEEEEeCCCcEEEEEcccCcceeeecc
Q 009993          154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-CTIR----------AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS  222 (520)
Q Consensus       154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~-~~v~----------~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  222 (520)
                      +..|+.++.++.|.-.|..+|+.+..+.... ..+.          .+...+..++.++.|+.+...|..+|+..- ...
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W-~~~  147 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVW-SKK  147 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEe-ecc
Confidence            5577778888999999999999887764321 1111          112234678888899999999998885321 110


Q ss_pred             CCccccceEEeccCC--CCeEE-EEEcCCEEEEEec------CCeEEEEECCCCcEEEEeee--cc--------------
Q 009993          223 GSEKQNTQFRLWEHE--GPITS-LALDLTRIYSGSW------DMTVRVWDRALLKCLKVLRH--SD--------------  277 (520)
Q Consensus       223 ~~~~~~~~~~~~~h~--~~v~~-l~~~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~--~~--------------  277 (520)
                                ...+.  ..+++ -.+.++.++.+..      +|.|..+|.++|+.+..+..  ..              
T Consensus       148 ----------~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~  217 (527)
T TIGR03075       148 ----------NGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGE  217 (527)
T ss_pred             ----------cccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccc
Confidence                      00111  11111 1123445555543      68999999999998876541  10              


Q ss_pred             ----------------CE---EEEeeCCCEEEEEc-C-----C-----------eEEEEECCCCeeeEEeecccc-----
Q 009993          278 ----------------WV---YGLAPHDTTVASTS-G-----S-----------DVYIWDTNSGCLLTVVNGAHV-----  316 (520)
Q Consensus       278 ----------------~v---~~~~~~~~~l~~~~-d-----~-----------~i~iwd~~~~~~~~~~~~~~~-----  316 (520)
                                      .+   .++.+...+++.+. +     +           .|.-.|+++|+....+...|.     
T Consensus       218 ~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~  297 (527)
T TIGR03075       218 PGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDY  297 (527)
T ss_pred             cccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccc
Confidence                            01   13334455555554 1     1           577889999998877763221     


Q ss_pred             ---cceEEEEecCCCC---EEEEEeCCCeEEEEEcccCcc
Q 009993          317 ---GNTKSLARSHTGD---FLFTGGEDGAIHMYEIINDCT  350 (520)
Q Consensus       317 ---~~i~~l~~s~~~~---~l~tg~~dg~i~iwd~~~~~~  350 (520)
                         ....-+....+|+   .++.+..+|.+++.|.++++.
T Consensus       298 d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       298 DGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             cCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence               1122223334665   788999999999999998854

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.10  E-value=0.0033  Score=63.43  Aligned_cols=230  Identities=15%  Similarity=0.193  Sum_probs=133.9

Q ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEeCCCCce-----EEE-EecCCCEEEEEe---------CCCcEEEEEcccCcceee
Q 009993          155 KLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT-----IRA-VAADKKLLVAGG---------TDGFIHCWRAVEVLPHLF  219 (520)
Q Consensus       155 ~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~-----v~~-~~~~~~~l~sg~---------~dg~i~vwd~~~~~~~~~  219 (520)
                      ..++.++.++.|.-+|.++|+.+..+......     +.+ ..-.+..++.++         .+|.+..+|..+|+.. +
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~-W  189 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLL-W  189 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCcee-e
Confidence            67888889999999999999998877543220     110 111234555554         3678888999888632 2


Q ss_pred             eccCCccccceEE-------eccCC-CCeE-EEEE--cCCEEEEEecCC------------------eEEEEECCCCcEE
Q 009993          220 DISGSEKQNTQFR-------LWEHE-GPIT-SLAL--DLTRIYSGSWDM------------------TVRVWDRALLKCL  270 (520)
Q Consensus       220 ~~~~~~~~~~~~~-------~~~h~-~~v~-~l~~--~~~~l~s~s~dg------------------~v~iwd~~~~~~~  270 (520)
                      .............       ...+. ..|. ..++  .++.++.++.++                  .|.-+|..+++..
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~  269 (488)
T cd00216         190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK  269 (488)
T ss_pred             EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence            2111000000000       00111 1111 2333  357788887665                  7999999999998


Q ss_pred             EEeeec---cC---------EEEEe-eCCC---EEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEE
Q 009993          271 KVLRHS---DW---------VYGLA-PHDT---TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT  333 (520)
Q Consensus       271 ~~~~~~---~~---------v~~~~-~~~~---~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~t  333 (520)
                      ..+...   ..         +..+. .++.   .+++++ +|.+..+|.++|+.+......    ...++.+|  ..++.
T Consensus       270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~vyv  343 (488)
T cd00216         270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GLVYL  343 (488)
T ss_pred             EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--ceEEE
Confidence            887521   10         11111 2333   566666 899999999999998876521    11233344  33333


Q ss_pred             E------------------eCCCeEEEEEcccCccccceeeeeeecCC--c------CC--EEEEEecCCEEEEEeCCCc
Q 009993          334 G------------------GEDGAIHMYEIINDCTEANVLLVATWIPH--T------GP--VNSLAFEFPWLVSAAGDGK  385 (520)
Q Consensus       334 g------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~h--~------~~--v~~l~~~~~~l~s~s~dg~  385 (520)
                      +                  ..+|.+.-.|+.+++.      +......  .      .+  ...+...++.|+.++.||.
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~------~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~  417 (488)
T cd00216         344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKV------VWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGY  417 (488)
T ss_pred             ccccccccCcccccCCCCCCCceEEEEEeCCCCcE------eeEeeCCccccccccCCcccCcceEecCCeEEEECCCCe
Confidence            2                  2357788888888842      2222111  0      11  1234556789999999999


Q ss_pred             EEEEeCCccccc
Q 009993          386 LSLIDVRKLLRS  397 (520)
Q Consensus       386 i~vwd~~~~~~~  397 (520)
                      |+.+|..++...
T Consensus       418 l~ald~~tG~~l  429 (488)
T cd00216         418 FRAFDATTGKEL  429 (488)
T ss_pred             EEEEECCCCcee
Confidence            999999986443

The alignment model contains an 8-bladed beta-propeller.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.07  E-value=0.0083  Score=55.72  Aligned_cols=229  Identities=13%  Similarity=0.151  Sum_probs=131.4

Q ss_pred             cCCCEEEEEeCCCeEEEEECCC-CcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCcccc
Q 009993          152 ASAKLLFTSGYDSIVRMWHLED-GFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQN  228 (520)
Q Consensus       152 ~~~~~l~sgs~dg~v~vwd~~~-~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~  228 (520)
                      ..++.|+.|..+| +.+++... ..........  .|..+.  ++-+.+++-+ |+.+.++++..-..............
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~--~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLS--SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEeecc--eEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            3578899999988 99999832 3332222222  255555  5556555554 49999999866432211000000000


Q ss_pred             -ceEEeccCCCCeEEEEE----cCCEEEEEecCCeEEEEECCCC-----cEEEEeeeccCEEEEeeCCCEEEEEcCCeEE
Q 009993          229 -TQFRLWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRALL-----KCLKVLRHSDWVYGLAPHDTTVASTSGSDVY  298 (520)
Q Consensus       229 -~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~v~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~  298 (520)
                       ...........+..++.    .+...+.....++|.+|.....     +..+.+..+..+.++...++.++.|......
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~  160 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFY  160 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceE
Confidence             00011123345555551    3444444555568998877653     4566667888899999889999999888899


Q ss_pred             EEECCCCeeeEEeeccc-----------ccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCE
Q 009993          299 IWDTNSGCLLTVVNGAH-----------VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPV  367 (520)
Q Consensus       299 iwd~~~~~~~~~~~~~~-----------~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v  367 (520)
                      +.|+.++.....+....           ..++..+.. +++.+|++-  |..-.+.|...... .  .....+   ...+
T Consensus       161 ~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G~~~-r--~~~i~W---~~~p  231 (275)
T PF00780_consen  161 LIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNGEPS-R--KSTIQW---SSAP  231 (275)
T ss_pred             EEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCCCcC-c--ccEEEc---CCch
Confidence            99999776544432111           112333333 345555543  33334445433311 1  112222   2356


Q ss_pred             EEEEecCCEEEEEeCCCcEEEEeCCcc
Q 009993          368 NSLAFEFPWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       368 ~~l~~~~~~l~s~s~dg~i~vwd~~~~  394 (520)
                      .++.+..++|++.+.++ |.||++.++
T Consensus       232 ~~~~~~~pyli~~~~~~-iEV~~~~~~  257 (275)
T PF00780_consen  232 QSVAYSSPYLIAFSSNS-IEVRSLETG  257 (275)
T ss_pred             hEEEEECCEEEEECCCE-EEEEECcCC
Confidence            77888888888877755 999999985

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.07  E-value=0.0088  Score=54.64  Aligned_cols=221  Identities=14%  Similarity=0.091  Sum_probs=131.2

Q ss_pred             EEEEEcc-CCCEEEEEeCCCe-EEEEECCCCcEEEEeCCCCce----EEEEecCCCEEEEEeC-----CCcEEEEEcccC
Q 009993          146 LTVFVLA-SAKLLFTSGYDSI-VRMWHLEDGFSIASSKPLGCT----IRAVAADKKLLVAGGT-----DGFIHCWRAVEV  214 (520)
Q Consensus       146 ~~l~~~~-~~~~l~sgs~dg~-v~vwd~~~~~~~~~~~~~~~~----v~~~~~~~~~l~sg~~-----dg~i~vwd~~~~  214 (520)
                      ..++.+| .+..++.+-.-|+ ..+||..+++....+......    --.++++|++|++.-.     .|.|-|||...+
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~   87 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG   87 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence            3567788 4566667766664 678999999887766432222    2267899999998644     488999998744


Q ss_pred             cceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEE------------------ecCCeEEEEECCCCcEEEEee
Q 009993          215 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG------------------SWDMTVRVWDRALLKCLKVLR  274 (520)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~------------------s~dg~v~iwd~~~~~~~~~~~  274 (520)
                      .            ..+..+..|.-.-..+.+  |+..|+.+                  +.+-++...|..+|+.+....
T Consensus        88 ~------------~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~  155 (305)
T PF07433_consen   88 Y------------RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVE  155 (305)
T ss_pred             c------------EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeee
Confidence            2            233344444433444444  45444443                  223456667778888777643


Q ss_pred             -----eccCEEEEe--eCCCEEEEEc-CCe-------EEEEECCCCeeeEEee------cccccceEEEEecCCCCEEEE
Q 009993          275 -----HSDWVYGLA--PHDTTVASTS-GSD-------VYIWDTNSGCLLTVVN------GAHVGNTKSLARSHTGDFLFT  333 (520)
Q Consensus       275 -----~~~~v~~~~--~~~~~l~~~~-d~~-------i~iwd~~~~~~~~~~~------~~~~~~i~~l~~s~~~~~l~t  333 (520)
                           |...|.-++  .+|..++... .|.       |.+++...  .+..+.      ..-.+.+-+|++++++.++++
T Consensus       156 Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~  233 (305)
T PF07433_consen  156 LPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV  233 (305)
T ss_pred             cCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEE
Confidence                 455666666  5555555543 222       44444333  222221      123467889999999987755


Q ss_pred             -EeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEE
Q 009993          334 -GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSL  388 (520)
Q Consensus       334 -g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~v  388 (520)
                       +=..+.+.+||..++      ..+....  -..+..++..+.-++..+..|.+..
T Consensus       234 tsPrGg~~~~~d~~tg------~~~~~~~--l~D~cGva~~~~~f~~ssG~G~~~~  281 (305)
T PF07433_consen  234 TSPRGGRVAVWDAATG------RLLGSVP--LPDACGVAPTDDGFLVSSGQGQLIR  281 (305)
T ss_pred             ECCCCCEEEEEECCCC------CEeeccc--cCceeeeeecCCceEEeCCCccEEE
Confidence             445688999999998      3433321  2245666665433444444455433

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=0.00033  Score=64.42  Aligned_cols=153  Identities=18%  Similarity=0.062  Sum_probs=90.5

Q ss_pred             EEEEECCCCcEEEEeCCCCceEEEEe--cCCC-EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEE
Q 009993          166 VRMWHLEDGFSIASSKPLGCTIRAVA--ADKK-LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITS  242 (520)
Q Consensus       166 v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  242 (520)
                      |++.+..+.+...-+..++..|..++  |..+ ++..++.+..|+|.|+++..             ....+..| ..+.+
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-------------~vssy~a~-~~~wS  240 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-------------VVSSYIAY-NQIWS  240 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-------------eeeheecc-CCcee
Confidence            44444444444444556666666554  5555 78899999999999998752             34445555 78999


Q ss_pred             EEE---cCCEEEEEecCCeEEEEECCCCcEEE-Eee---eccCEEEEe--------eCCCEEEEEcCCeEEEEECC--CC
Q 009993          243 LAL---DLTRIYSGSWDMTVRVWDRALLKCLK-VLR---HSDWVYGLA--------PHDTTVASTSGSDVYIWDTN--SG  305 (520)
Q Consensus       243 l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~---~~~~v~~~~--------~~~~~l~~~~d~~i~iwd~~--~~  305 (520)
                      ++|   +.++++.|-..|.|.+||++..+-.. .+.   ...+|..++        +.+.+++... -.+..|+..  .+
T Consensus       241 C~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~l-t~l~f~ei~~s~~  319 (463)
T KOG1645|consen  241 CCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFAL-TVLQFYEIVFSAE  319 (463)
T ss_pred             eeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeee-hhhhhhhhhcccc
Confidence            999   45789999999999999998654322 111   334455544        2233333322 233444432  22


Q ss_pred             eeeEEeecccccceEEEEecCCCCEEEE
Q 009993          306 CLLTVVNGAHVGNTKSLARSHTGDFLFT  333 (520)
Q Consensus       306 ~~~~~~~~~~~~~i~~l~~s~~~~~l~t  333 (520)
                      ......+.+..+...++.+.+..+.++.
T Consensus       320 ~~p~vlele~pG~cismqy~~~snh~l~  347 (463)
T KOG1645|consen  320 CLPCVLELEPPGICISMQYHGVSNHLLL  347 (463)
T ss_pred             CCCcccccCCCcceeeeeecCccceEEE
Confidence            2222222234566667777765554443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.05  E-value=0.0016  Score=68.43  Aligned_cols=205  Identities=15%  Similarity=0.128  Sum_probs=124.5

Q ss_pred             cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEE-EEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEc----ccCcc
Q 009993          142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI-ASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRA----VEVLP  216 (520)
Q Consensus       142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~----~~~~~  216 (520)
                      .+.|.++.|..++.-++.+..+|.|.+-|.++.... ......+....+++||+..++..+.++++.+-.-    -...+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence            378999999999999999999999999998876432 2233445566677799999999888888765322    11110


Q ss_pred             e---------ee---------eccCCccccceEEecc---------CCCCeEEEEE--cCCEEEEE-----ecCCeEEEE
Q 009993          217 H---------LF---------DISGSEKQNTQFRLWE---------HEGPITSLAL--DLTRIYSG-----SWDMTVRVW  262 (520)
Q Consensus       217 ~---------~~---------~~~~~~~~~~~~~~~~---------h~~~v~~l~~--~~~~l~s~-----s~dg~v~iw  262 (520)
                      .         ..         +..++...........         -.+.=+++.|  ||.++++.     ...+.|++|
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~  227 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY  227 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence            0         00         0000000000000000         1112245788  77787772     333799999


Q ss_pred             ECCCCcEEEEee---eccCEEEEeeCCCEEEEEc----CCeEEEEECCCCe---eeEEeecccccceEEEEecCCCCEEE
Q 009993          263 DRALLKCLKVLR---HSDWVYGLAPHDTTVASTS----GSDVYIWDTNSGC---LLTVVNGAHVGNTKSLARSHTGDFLF  332 (520)
Q Consensus       263 d~~~~~~~~~~~---~~~~v~~~~~~~~~l~~~~----d~~i~iwd~~~~~---~~~~~~~~~~~~i~~l~~s~~~~~l~  332 (520)
                      |.+ |..-..-.   ......+..|.|..+++-.    ++.|.+|..+.-+   ....++ .....+..++|+.++..|+
T Consensus       228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p-~de~~ve~L~Wns~sdiLA  305 (1265)
T KOG1920|consen  228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP-LDEKEVEELAWNSNSDILA  305 (1265)
T ss_pred             ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCc-ccccchheeeecCCCCcee
Confidence            987 33222211   2233444558888888754    4678888765422   121222 1233489999999999998


Q ss_pred             E---EeCCCeEEEEEcccC
Q 009993          333 T---GGEDGAIHMYEIIND  348 (520)
Q Consensus       333 t---g~~dg~i~iwd~~~~  348 (520)
                      +   ......|++|-+.+-
T Consensus       306 v~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  306 VVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             eeecccccceEEEEEecCe
Confidence            7   555566999988765

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.04  E-value=0.0029  Score=61.74  Aligned_cols=88  Identities=22%  Similarity=0.249  Sum_probs=66.6

Q ss_pred             EEEECCCC--eeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-
Q 009993          298 YIWDTNSG--CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-  374 (520)
Q Consensus       298 ~iwd~~~~--~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-  374 (520)
                      .+|+...+  +.+....-.....+.+++++|+.+.++.|+.||+|.+||...+        +..+..+.-.++.++|+| 
T Consensus       239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~--------~t~~~ka~~~P~~iaWHp~  310 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG--------VTLLAKAEFIPTLIAWHPD  310 (545)
T ss_pred             EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCC--------eeeeeeecccceEEEEcCC
Confidence            44554433  2333333357889999999999999999999999999998776        222223345678999977 


Q ss_pred             -CEEEEEeCCCcEEEEeCCc
Q 009993          375 -PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       375 -~~l~s~s~dg~i~vwd~~~  393 (520)
                       ..+++|+..|.+.+||+.-
T Consensus       311 gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  311 GAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             CcEEEEEcCCceEEEEEeec
Confidence             4999999999999999874

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.96  E-value=0.0068  Score=59.62  Aligned_cols=143  Identities=9%  Similarity=0.078  Sum_probs=87.8

Q ss_pred             EEEecCCCE-EEEEeCC---CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEE-EEecC--Ce
Q 009993          188 RAVAADKKL-LVAGGTD---GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIY-SGSWD--MT  258 (520)
Q Consensus       188 ~~~~~~~~~-l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~-s~s~d--g~  258 (520)
                      -.++|+|+. ++..+.+   ..|.++|+.++..              ..+....+......|  |++.++ +.+.+  ..
T Consensus       193 p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--------------~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~  258 (419)
T PRK04043        193 PKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--------------EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPD  258 (419)
T ss_pred             EEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--------------EEEecCCCcEEeeEECCCCCEEEEEEccCCCcE
Confidence            456799984 5544443   4588888877632              122223344445556  776654 34333  46


Q ss_pred             EEEEECCCCcEEEEeeecc--CEEEEeeCCCEEEEEcC--C--eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEE
Q 009993          259 VRVWDRALLKCLKVLRHSD--WVYGLAPHDTTVASTSG--S--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLF  332 (520)
Q Consensus       259 v~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~l~~~~d--~--~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~  332 (520)
                      |.++|+.+++......+..  .-..++|+|+.++..++  +  .|++.|+.+++..+....+.    ....|+|+|+.++
T Consensus       259 Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~----~~~~~SPDG~~Ia  334 (419)
T PRK04043        259 IYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK----NNSSVSTYKNYIV  334 (419)
T ss_pred             EEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC----cCceECCCCCEEE
Confidence            8888988876544333332  22346699988877763  2  68999998887644432221    1248999999887


Q ss_pred             EEeCC---------CeEEEEEcccC
Q 009993          333 TGGED---------GAIHMYEIIND  348 (520)
Q Consensus       333 tg~~d---------g~i~iwd~~~~  348 (520)
                      ..+..         ..|.+.|+.++
T Consensus       335 ~~~~~~~~~~~~~~~~I~v~d~~~g  359 (419)
T PRK04043        335 YSSRETNNEFGKNTFNLYLISTNSD  359 (419)
T ss_pred             EEEcCCCcccCCCCcEEEEEECCCC
Confidence            65543         36788888776

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.95  E-value=0.0034  Score=57.23  Aligned_cols=198  Identities=23%  Similarity=0.317  Sum_probs=117.6

Q ss_pred             ccHHHhhhhhccccccEEEEEEccCCCEEEEEeC-----CCeEEEEECC-CCcEEEEeCCCCceEEE--EecCCCEEEEE
Q 009993          129 KSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGY-----DSIVRMWHLE-DGFSIASSKPLGCTIRA--VAADKKLLVAG  200 (520)
Q Consensus       129 ~~W~~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~-----dg~v~vwd~~-~~~~~~~~~~~~~~v~~--~~~~~~~l~sg  200 (520)
                      .+|-.--+.|.||.      .|++||++|+|.-.     .|.|-|||.. +-..+..+..|...-..  +.+++..|+++
T Consensus        43 ~~~a~~gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA  116 (305)
T PF07433_consen   43 RLWAPPGRHFYGHG------VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA  116 (305)
T ss_pred             EEcCCCCCEEecCE------EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence            33445566788884      69999999998643     5889999998 56777888766544333  45888777765


Q ss_pred             eC-------CCcEEEEEcccCcceeeec-cCCccccceEEe--ccCCCCeEEEEEcC-CEEEEEec-CC-------eEEE
Q 009993          201 GT-------DGFIHCWRAVEVLPHLFDI-SGSEKQNTQFRL--WEHEGPITSLALDL-TRIYSGSW-DM-------TVRV  261 (520)
Q Consensus       201 ~~-------dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~--~~h~~~v~~l~~~~-~~l~s~s~-dg-------~v~i  261 (520)
                      -.       .|..++ |+.+..+.+.-+ ...........+  .-|...|..+++++ ..++.|.. .|       -|-+
T Consensus       117 NGGI~Thpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~  195 (305)
T PF07433_consen  117 NGGIETHPDSGRAKL-NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVAL  195 (305)
T ss_pred             cCCCccCcccCceec-ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEE
Confidence            31       123322 444444333333 111222233345  34778899999833 33333322 21       1233


Q ss_pred             EECCCCcEEEEee--------eccCEEEEe--eCCCEEEEEc--CCeEEEEECCCCeeeEEeecccccceEEEEecCCCC
Q 009993          262 WDRALLKCLKVLR--------HSDWVYGLA--PHDTTVASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD  329 (520)
Q Consensus       262 wd~~~~~~~~~~~--------~~~~v~~~~--~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~  329 (520)
                      ++.  ++.+..+.        ....+-+|+  .++..+++++  .+.+.+||..+++.+....   -..+..++-.+++ 
T Consensus       196 ~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~---l~D~cGva~~~~~-  269 (305)
T PF07433_consen  196 HRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP---LPDACGVAPTDDG-  269 (305)
T ss_pred             EcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc---cCceeeeeecCCc-
Confidence            332  22222222        346677777  5677888877  7899999999999887754   3345666666666 


Q ss_pred             EEEEEeCCCeE
Q 009993          330 FLFTGGEDGAI  340 (520)
Q Consensus       330 ~l~tg~~dg~i  340 (520)
                      ++++.+ .|.+
T Consensus       270 f~~ssG-~G~~  279 (305)
T PF07433_consen  270 FLVSSG-QGQL  279 (305)
T ss_pred             eEEeCC-CccE
Confidence            555544 4443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.92  E-value=0.014  Score=51.83  Aligned_cols=229  Identities=14%  Similarity=0.065  Sum_probs=123.4

Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCC--cEEEEeCCC-----CceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeee
Q 009993          148 VFVLASAKLLFTSGYDSIVRMWHLEDG--FSIASSKPL-----GCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD  220 (520)
Q Consensus       148 l~~~~~~~~l~sgs~dg~v~vwd~~~~--~~~~~~~~~-----~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  220 (520)
                      ++.+.+|++||.- .|..|-|=...+.  ..+......     .-.-.+++||+..||.+...|+|+++|+....  ++.
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~--lf~   79 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE--LFV   79 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce--eEE
Confidence            5667888877765 4666666544332  122222111     22345778999999999999999999987643  333


Q ss_pred             ccCCccccceEEeccCCCCeEEEEE-cC-------CEEEEEecCCeEEEEECCC-----CcEEEEee----eccCEEEEe
Q 009993          221 ISGSEKQNTQFRLWEHEGPITSLAL-DL-------TRIYSGSWDMTVRVWDRAL-----LKCLKVLR----HSDWVYGLA  283 (520)
Q Consensus       221 ~~~~~~~~~~~~~~~h~~~v~~l~~-~~-------~~l~s~s~dg~v~iwd~~~-----~~~~~~~~----~~~~v~~~~  283 (520)
                      +......     ...-...|..+.| +.       ..|++-..+|.++-|-+..     .+..+.+.    .+..|.++.
T Consensus        80 I~p~~~~-----~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v  154 (282)
T PF15492_consen   80 IPPAMSF-----PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAV  154 (282)
T ss_pred             cCccccc-----CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEE
Confidence            2221110     1123466777777 21       2477777888888776532     23444444    466788777


Q ss_pred             --eCCCEEEEEc-C-CeEEEEECCCCeeeEEeecccccceEEEEe---cCCCCEEEEEeCCCe------EEEEEcccCcc
Q 009993          284 --PHDTTVASTS-G-SDVYIWDTNSGCLLTVVNGAHVGNTKSLAR---SHTGDFLFTGGEDGA------IHMYEIINDCT  350 (520)
Q Consensus       284 --~~~~~l~~~~-d-~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~---s~~~~~l~tg~~dg~------i~iwd~~~~~~  350 (520)
                        +..++|++|+ . ..-..+.            +....+++-..   .|..+. ++..+|+.      -.+|.+-+.  
T Consensus       155 y~p~h~LLlVgG~~~~~~~~s~------------a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~--  219 (282)
T PF15492_consen  155 YHPKHRLLLVGGCEQNQDGMSK------------ASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSF--  219 (282)
T ss_pred             EcCCCCEEEEeccCCCCCcccc------------ccccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccce--
Confidence              5556666665 2 2100000            01111111111   111111 11111211      122222211  


Q ss_pred             ccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCC
Q 009993          351 EANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSG  403 (520)
Q Consensus       351 ~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  403 (520)
                          ............|..|..+|  ..||+...+|.|.+|++.+.....++...
T Consensus       220 ----~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  220 ----KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             ----eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence                11111122355777777766  79999999999999999987766655443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.87  E-value=0.0054  Score=60.21  Aligned_cols=226  Identities=12%  Similarity=0.087  Sum_probs=115.3

Q ss_pred             eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEEC
Q 009993          186 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDR  264 (520)
Q Consensus       186 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~  264 (520)
                      ...+.+|+++.+++ +.||...++.....               ....   .+.-..+.| ..+.+++-...++|.++.-
T Consensus        36 ~~ls~npngr~v~V-~g~geY~iyt~~~~---------------r~k~---~G~g~~~vw~~~n~yAv~~~~~~I~I~kn   96 (443)
T PF04053_consen   36 QSLSHNPNGRFVLV-CGDGEYEIYTALAW---------------RNKA---FGSGLSFVWSSRNRYAVLESSSTIKIYKN   96 (443)
T ss_dssp             SEEEE-TTSSEEEE-EETTEEEEEETTTT---------------EEEE---EEE-SEEEE-TSSEEEEE-TTS-EEEEET
T ss_pred             eeEEECCCCCEEEE-EcCCEEEEEEccCC---------------cccc---cCceeEEEEecCccEEEEECCCeEEEEEc
Confidence            34456699999888 55677777763221               1111   233345666 4567777777889999632


Q ss_pred             CCCcEEEEeeeccCEEEEeeCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEE
Q 009993          265 ALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE  344 (520)
Q Consensus       265 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd  344 (520)
                      -+.+....+..+..+..+-. |.+|...+++.|.+||..+++.+..+.  .. +|..+.|+++|.+++..+.+ .+.|++
T Consensus        97 ~~~~~~k~i~~~~~~~~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~--v~-~vk~V~Ws~~g~~val~t~~-~i~il~  171 (443)
T PF04053_consen   97 FKNEVVKSIKLPFSVEKIFG-GNLLGVKSSDFICFYDWETGKLIRRID--VS-AVKYVIWSDDGELVALVTKD-SIYILK  171 (443)
T ss_dssp             TEE-TT-----SS-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEES--S--E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred             CccccceEEcCCcccceEEc-CcEEEEECCCCEEEEEhhHcceeeEEe--cC-CCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence            23333334444434454545 888888888899999999999999985  22 48999999999999988766 577766


Q ss_pred             cccC----ccccce-eeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc
Q 009993          345 IIND----CTEANV-LLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML  419 (520)
Q Consensus       345 ~~~~----~~~~~~-~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (520)
                      ....    ...... .....+..-...|.+..|..+.++-.+.. .|+.+--..            ...+..+.      
T Consensus       172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkYl~~Ge------------~~~i~~ld------  232 (443)
T PF04053_consen  172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKYLVNGE------------TGIIAHLD------  232 (443)
T ss_dssp             E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEEEETTE------------EEEEEE-S------
T ss_pred             ecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEEEEcCC------------cceEEEcC------
Confidence            5433    000000 01222222245788888877655555554 666632111            00111111      


Q ss_pred             cCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhH
Q 009993          420 HGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEI  456 (520)
Q Consensus       420 ~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~  456 (520)
                        ...-+....+..+.+.....|+.|..+.+......
T Consensus       233 --~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~~~  267 (443)
T PF04053_consen  233 --KPLYLLGYLPKENRLYLIDRDGNVISYELDLSELE  267 (443)
T ss_dssp             --S--EEEEEETTTTEEEEE-TT--EEEEE--HHHHH
T ss_pred             --CceEEEEEEccCCEEEEEECCCCEEEEEECHHHHH
Confidence              11223344444478999999999999998865443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.87  E-value=0.0038  Score=60.43  Aligned_cols=199  Identities=14%  Similarity=0.057  Sum_probs=112.5

Q ss_pred             cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEE-------------------------------------------Ee
Q 009993          144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA-------------------------------------------SS  180 (520)
Q Consensus       144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~-------------------------------------------~~  180 (520)
                      .|+.+.|.++..-|+.|...|.|.||.....+...                                           -+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58899999998889999999999999764321110                                           01


Q ss_pred             CCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-------cC---CE
Q 009993          181 KPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-------DL---TR  249 (520)
Q Consensus       181 ~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-------~~---~~  249 (520)
                      .....+|.++. .|=.+++.|..+|.+.|.|++... -++...-.+    ...-......|+++.|       |+   -.
T Consensus        83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPa-vI~~~~i~~----~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~  157 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPA-VIYNENIRE----SFLSKSSSSYVTSIEFSVMTLGGDGYSSIC  157 (395)
T ss_dssp             ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTE-EEEEEEGGG------T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred             eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCe-EEeeccccc----cccccccccCeeEEEEEEEecCCCcccceE
Confidence            12245666666 566789999999999999995543 222111000    0001123456777877       22   35


Q ss_pred             EEEEecCCeEEEEECC--C-CcEEEE----e-eeccCEEEEee------------------------CCCEEEEEcCCeE
Q 009993          250 IYSGSWDMTVRVWDRA--L-LKCLKV----L-RHSDWVYGLAP------------------------HDTTVASTSGSDV  297 (520)
Q Consensus       250 l~s~s~dg~v~iwd~~--~-~~~~~~----~-~~~~~v~~~~~------------------------~~~~l~~~~d~~i  297 (520)
                      +++|...|.+.+|.+.  . +.....    . .+.+.|..+.+                        ...+++++++..+
T Consensus       158 L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i  237 (395)
T PF08596_consen  158 LLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI  237 (395)
T ss_dssp             EEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred             EEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence            8899999999999764  1 211111    1 24455554431                        1236777889999


Q ss_pred             EEEECCCCeeeEEeecccccceEEEEec-----CCCCEEEEEeCCCeEEEEEcccC
Q 009993          298 YIWDTNSGCLLTVVNGAHVGNTKSLARS-----HTGDFLFTGGEDGAIHMYEIIND  348 (520)
Q Consensus       298 ~iwd~~~~~~~~~~~~~~~~~i~~l~~s-----~~~~~l~tg~~dg~i~iwd~~~~  348 (520)
                      +++.+.+.+...+... .......+++-     ..+..|++-..+|.|++|.+..-
T Consensus       238 rv~~~~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L  292 (395)
T PF08596_consen  238 RVFKPPKSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL  292 (395)
T ss_dssp             EEE-TT---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred             EEEeCCCCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence            9999998877665542 22233344442     35667888899999999999877

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.83  E-value=0.038  Score=54.25  Aligned_cols=208  Identities=15%  Similarity=0.076  Sum_probs=103.7

Q ss_pred             EEEccCCCEEEEEeCC----------C-eEEEEECCCCcEEEEeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCc
Q 009993          148 VFVLASAKLLFTSGYD----------S-IVRMWHLEDGFSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVL  215 (520)
Q Consensus       148 l~~~~~~~~l~sgs~d----------g-~v~vwd~~~~~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~  215 (520)
                      ++.+|.|..+|....+          . .|.||+. .|+.+.++.=....+.++. .+...|+.-..||.++++|+....
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~  112 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF  112 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce
Confidence            3445555555554333          2 5889985 4666666543336777777 456677888899999999985322


Q ss_pred             ceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCc-EEEEee-----------e--ccCEEE
Q 009993          216 PHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLK-CLKVLR-----------H--SDWVYG  281 (520)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~-----------~--~~~v~~  281 (520)
                        .+.+..     ......-....+....+.++-++.-..++.+.+.+--... ..+.+.           .  ...+..
T Consensus       113 --~fsl~~-----~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~  185 (410)
T PF04841_consen  113 --QFSLGE-----EIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPL  185 (410)
T ss_pred             --eechhh-----hccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceE
Confidence              111111     0111111122222223321223333334444443221111 111110           0  001111


Q ss_pred             EeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeee
Q 009993          282 LAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW  360 (520)
Q Consensus       282 ~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~  360 (520)
                      +..+....+... ++.+.+.+......   +  ...+++..|++||+++++|.-..+|.+.+.+..-.      .....+
T Consensus       186 l~~~~~~~i~~~~g~~i~~i~~~~~~~---i--~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~------~~~~e~  254 (410)
T PF04841_consen  186 LSSDRVVEILLANGETIYIIDENSFKQ---I--DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS------EKLCEF  254 (410)
T ss_pred             eecCcceEEEEecCCEEEEEEcccccc---c--cCCCCeEEEEECCCCCEEEEEECCCCEEEEECccc------ceeEEe
Confidence            223333333333 55555444332211   2  13468999999999999999999999988876544      223333


Q ss_pred             cCC-cCCEEEEEecC
Q 009993          361 IPH-TGPVNSLAFEF  374 (520)
Q Consensus       361 ~~h-~~~v~~l~~~~  374 (520)
                      ... ......+.|-+
T Consensus       255 ~~~~~~~p~~~~WCG  269 (410)
T PF04841_consen  255 DTDSKSPPKQMAWCG  269 (410)
T ss_pred             ecCcCCCCcEEEEEC
Confidence            222 33556666644

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.81  E-value=0.0002  Score=69.49  Aligned_cols=75  Identities=16%  Similarity=0.215  Sum_probs=61.9

Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccC
Q 009993          140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEV  214 (520)
Q Consensus       140 ~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~  214 (520)
                      .....|.|++++|+.+.|+.|..||+|.+||...+.....-..-.....++.|+|..+++|+..|.+.+||+.-+
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            356789999999999999999999999999988775444333334456677899999999999999999998654

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.80  E-value=0.0028  Score=48.11  Aligned_cols=96  Identities=23%  Similarity=0.276  Sum_probs=68.1

Q ss_pred             eEEEEE---cC---CEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe-eCCCEEEEEc-CCeEEEEECCCCeeeEEe
Q 009993          240 ITSLAL---DL---TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVV  311 (520)
Q Consensus       240 v~~l~~---~~---~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~-d~~i~iwd~~~~~~~~~~  311 (520)
                      |++|++   ++   +.|++||.|..|++|+-  .+.+..+...+.|.++. ..+..++.+. +|+|-+|+-  ...+..+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRi   77 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRI   77 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeee
Confidence            566666   33   67999999999999984  47788888888899988 4445566666 999999976  3344455


Q ss_pred             ecccccceEEEEecC-CC---CEEEEEeCCCeEE
Q 009993          312 NGAHVGNTKSLARSH-TG---DFLFTGGEDGAIH  341 (520)
Q Consensus       312 ~~~~~~~i~~l~~s~-~~---~~l~tg~~dg~i~  341 (520)
                      +.  ...++++++.. ++   .-|++|-.+|.|-
T Consensus        78 KS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   78 KS--KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             cc--CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            42  33466666543 32   2689999999874

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.73  E-value=0.029  Score=56.43  Aligned_cols=179  Identities=13%  Similarity=-0.081  Sum_probs=109.6

Q ss_pred             EccCCCEEEE-EeCCCeEEEEECCCCcEEEEeCC-CCceEEEEecCCCEEEEEeCCC----cEEEEEcccCcceeeeccC
Q 009993          150 VLASAKLLFT-SGYDSIVRMWHLEDGFSIASSKP-LGCTIRAVAADKKLLVAGGTDG----FIHCWRAVEVLPHLFDISG  223 (520)
Q Consensus       150 ~~~~~~~l~s-gs~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sg~~dg----~i~vwd~~~~~~~~~~~~~  223 (520)
                      +.|||+.+.. .-..+.+.+.|.++.+...++.. -......+++++.++++.+.+.    ++..-+..+.         
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~---------  270 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER---------  270 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccC---------
Confidence            3456665533 23356778888887776665542 2333456778888888876432    2222221110         


Q ss_pred             CccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCC-----CcEEEEeeeccCEEE--EeeCCCEEEEEc--C
Q 009993          224 SEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRAL-----LKCLKVLRHSDWVYG--LAPHDTTVASTS--G  294 (520)
Q Consensus       224 ~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~-----~~~~~~~~~~~~v~~--~~~~~~~l~~~~--d  294 (520)
                          .....+  .-..+..+.-+|++...  .++.|.+.|..+     .+.+..+.-......  ++|+|+++++++  +
T Consensus       271 ----d~~vvf--ni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS  342 (635)
T PRK02888        271 ----DWVVVF--NIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLS  342 (635)
T ss_pred             ----ceEEEE--chHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCC
Confidence                000000  00001111115666555  357899999998     466666664444444  559999999988  7


Q ss_pred             CeEEEEECCCCee------------eEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEccc
Q 009993          295 SDVYIWDTNSGCL------------LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIN  347 (520)
Q Consensus       295 ~~i~iwd~~~~~~------------~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~  347 (520)
                      .+|.|+|+.+.+.            +....  -.......+|.++|....+-.-|..|..||+..
T Consensus       343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaeve--vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPE--LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CcEEEEEChhhhhhhhccCCccceEEEeec--cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            9999999988553            33332  123345678999999888889999999999976

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.71  E-value=0.033  Score=51.66  Aligned_cols=219  Identities=14%  Similarity=0.139  Sum_probs=123.0

Q ss_pred             ecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCc
Q 009993          191 AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK  268 (520)
Q Consensus       191 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~  268 (520)
                      ...++.|+.|+.+| +.+++.....            .....  .+...|..+..  +-+.+++-+ |+.+.++++....
T Consensus         4 ~~~~~~L~vGt~~G-l~~~~~~~~~------------~~~~i--~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~   67 (275)
T PF00780_consen    4 DSWGDRLLVGTEDG-LYVYDLSDPS------------KPTRI--LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLE   67 (275)
T ss_pred             ccCCCEEEEEECCC-EEEEEecCCc------------cceeE--eecceEEEEEEecccCEEEEEc-CCccEEEEchhhc
Confidence            35678899999998 8888872221            11111  12333888888  335565555 4999999987554


Q ss_pred             EEE---------------EeeeccCEEEEe-----eCCCEEEEEcCCeEEEEECCCC-----eeeEEeecccccceEEEE
Q 009993          269 CLK---------------VLRHSDWVYGLA-----PHDTTVASTSGSDVYIWDTNSG-----CLLTVVNGAHVGNTKSLA  323 (520)
Q Consensus       269 ~~~---------------~~~~~~~v~~~~-----~~~~~l~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~i~~l~  323 (520)
                      ...               .+.....+..++     .....++++....|.+|.....     ...+.+.  -...+..++
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~  145 (275)
T PF00780_consen   68 PVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIA  145 (275)
T ss_pred             cccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE--cCCCcEEEE
Confidence            333               222233344433     3344566666789888877653     3455554  457888999


Q ss_pred             ecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec----------CCcCCEEEEEecC-CEEEEEeCCCcEEEEeCC
Q 009993          324 RSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI----------PHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       324 ~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~----------~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~  392 (520)
                      |.  ++.++.|..++ ..+.|+.++..    ..+....          ....++..+..+. .+|++-  |..-.+-|..
T Consensus       146 ~~--~~~i~v~~~~~-f~~idl~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~~  216 (275)
T PF00780_consen  146 FL--GNKICVGTSKG-FYLIDLNTGSP----SELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNKN  216 (275)
T ss_pred             Ee--CCEEEEEeCCc-eEEEecCCCCc----eEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcCC
Confidence            97  66777776555 77889886632    1111111          1123455555543 444432  2233333332


Q ss_pred             cccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhH
Q 009993          393 KLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEI  456 (520)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~  456 (520)
                      .. ..                . ...+.-. ....++.....+|+..+.++ |.||++.++..+
T Consensus       217 G~-~~----------------r-~~~i~W~-~~p~~~~~~~pyli~~~~~~-iEV~~~~~~~lv  260 (275)
T PF00780_consen  217 GE-PS----------------R-KSTIQWS-SAPQSVAYSSPYLIAFSSNS-IEVRSLETGELV  260 (275)
T ss_pred             CC-cC----------------c-ccEEEcC-CchhEEEEECCEEEEECCCE-EEEEECcCCcEE
Confidence            21 00                0 0011111 13345555566777777655 999999998543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.71  E-value=2.1e-05  Score=76.36  Aligned_cols=242  Identities=15%  Similarity=0.157  Sum_probs=140.4

Q ss_pred             cccEEEEEEccC--CCEEEEEeCCCeEEEEECCCCcE--EEEeCCCCceEEEEe---cCCCEEEEEe----CCCcEEEEE
Q 009993          142 TEAVLTVFVLAS--AKLLFTSGYDSIVRMWHLEDGFS--IASSKPLGCTIRAVA---ADKKLLVAGG----TDGFIHCWR  210 (520)
Q Consensus       142 ~~~V~~l~~~~~--~~~l~sgs~dg~v~vwd~~~~~~--~~~~~~~~~~v~~~~---~~~~~l~sg~----~dg~i~vwd  210 (520)
                      +..+.|++...+  ..+++.|..+|.|.+-.+....-  ....+++...+.+++   .|.+.||+|-    .|..+.+||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            456678877653  35788999999999988754322  223455666666665   4556777774    356799999


Q ss_pred             cccCcceeeeccCCccccceEEec-cCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCc-EEEEeeeccCEE--EEee
Q 009993          211 AVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK-CLKVLRHSDWVY--GLAP  284 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~~~v~--~~~~  284 (520)
                      +.++...         ......+. +......+++|  +.+.+++|.....++++|++..- ....+ ....+.  .+.|
T Consensus       136 i~s~ltv---------Pke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv-nTk~vqG~tVdp  205 (783)
T KOG1008|consen  136 INSLLTV---------PKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV-NTKYVQGITVDP  205 (783)
T ss_pred             cccccCC---------CccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh-hhhhcccceecC
Confidence            9876211         01111111 23345557888  66788999998999999987321 11111 122233  3444


Q ss_pred             -CCCEEEEEcCCeEEEEE-CCCCe-eeEEee---cccccceEEEEecCCC-CEEEEEeC-CCeEEEEEcccCccccc---
Q 009993          285 -HDTTVASTSGSDVYIWD-TNSGC-LLTVVN---GAHVGNTKSLARSHTG-DFLFTGGE-DGAIHMYEIINDCTEAN---  353 (520)
Q Consensus       285 -~~~~l~~~~d~~i~iwd-~~~~~-~~~~~~---~~~~~~i~~l~~s~~~-~~l~tg~~-dg~i~iwd~~~~~~~~~---  353 (520)
                       .++++++..||.|.+|| .++-+ ++..+.   ......+..++|.|.. ..+++... .++|+.||+........   
T Consensus       206 ~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn  285 (783)
T KOG1008|consen  206 FSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANN  285 (783)
T ss_pred             CCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccc
Confidence             78888888899999999 43322 222221   1122358899999953 34455444 57899999864322110   


Q ss_pred             --eeeeee---ecCC--cCCEEEEEecC----CEEEEEeCCCcEEEEeCCc
Q 009993          354 --VLLVAT---WIPH--TGPVNSLAFEF----PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       354 --~~~~~~---~~~h--~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~  393 (520)
                        ......   +...  ...|.+..|++    ...+.+...-++.-+++..
T Consensus       286 ~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e  336 (783)
T KOG1008|consen  286 SVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE  336 (783)
T ss_pred             cceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccchh
Confidence              000111   1111  24566666654    3455555555566555543

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.66  E-value=3.9e-05  Score=77.14  Aligned_cols=191  Identities=13%  Similarity=0.083  Sum_probs=118.8

Q ss_pred             EEEEeCCCCceEEE--EecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEE
Q 009993          176 SIASSKPLGCTIRA--VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIY  251 (520)
Q Consensus       176 ~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~  251 (520)
                      ..+++..|....+|  ++.+.+.|+.|+..|.|+++++.+|.             .......|..+|+-+..  +|..++
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-------------~e~s~ncH~SavT~vePs~dgs~~L 1159 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-------------MEESVNCHQSAVTLVEPSVDGSTQL 1159 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc-------------ccccccccccccccccccCCcceee
Confidence            34456666655554  45778899999999999999998874             34456689999999988  777766


Q ss_pred             EEecCC--eEEEEECCC-CcEEEEeeeccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecc---cccceEEEEe
Q 009993          252 SGSWDM--TVRVWDRAL-LKCLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGA---HVGNTKSLAR  324 (520)
Q Consensus       252 s~s~dg--~v~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~---~~~~i~~l~~  324 (520)
                      +.+.-.  -..+|++.+ +...+++.....| .++..-..-+.|. .....+||+.++..+.++..+   ....-++..|
T Consensus      1160 tsss~S~PlsaLW~~~s~~~~~Hsf~ed~~v-kFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1160 TSSSSSSPLSALWDASSTGGPRHSFDEDKAV-KFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred             eeccccCchHHHhccccccCcccccccccee-ehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence            554332  467899763 3344444322211 1222222223344 677899999999877764322   1223367889


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCccccc
Q 009993          325 SHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRS  397 (520)
Q Consensus       325 s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~  397 (520)
                      +|+..+++   .||  .+||++..      ..+..+...+..+ .-.|+|  ..++.-+     .|||+++....
T Consensus      1239 sP~D~LIl---ndG--vLWDvR~~------~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1239 SPCDTLIL---NDG--VLWDVRIP------EAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred             CCCcceEe---eCc--eeeeeccH------HHHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHHHH
Confidence            99988876   566  46999988      3444443322111 123555  3444433     48999986443

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.66  E-value=0.0067  Score=60.77  Aligned_cols=266  Identities=15%  Similarity=0.124  Sum_probs=136.5

Q ss_pred             EEEEEeCCCeEEEEECCCCcEEEEeCCCCc---eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEE
Q 009993          156 LLFTSGYDSIVRMWHLEDGFSIASSKPLGC---TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR  232 (520)
Q Consensus       156 ~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  232 (520)
                      .+.||+..|.|+|+-+.+++.+..+...+.   .=+.+....+.++..+..|....|.  +.                  
T Consensus        68 ~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~g--D~------------------  127 (635)
T PRK02888         68 GFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNG--DT------------------  127 (635)
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCC--Cc------------------
Confidence            367899999999999999988877642211   1111121222222222212222221  00                  


Q ss_pred             eccCC-CCeEEEEEcCCEEEEEec-CCeEEEEECCCCcEEEEee-------e---------ccCEEEE-------eeCCC
Q 009993          233 LWEHE-GPITSLALDLTRIYSGSW-DMTVRVWDRALLKCLKVLR-------H---------SDWVYGL-------APHDT  287 (520)
Q Consensus       233 ~~~h~-~~v~~l~~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~-------~---------~~~v~~~-------~~~~~  287 (520)
                        .|. -.-+.=.+||++++.-.. +..|-..+++..++-+.+.       |         ...|.+-       .++|+
T Consensus       128 --HHp~~s~t~g~ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk  205 (635)
T PRK02888        128 --HHPHMSFTDGTYDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGK  205 (635)
T ss_pred             --CCCcccccCCccceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCC
Confidence              011 111222346777777664 4556566665555443332       2         1223321       14666


Q ss_pred             EEEEEc--CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC-----------------------------
Q 009993          288 TVASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-----------------------------  336 (520)
Q Consensus       288 ~l~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~-----------------------------  336 (520)
                      .+...+  .+.+.+.|..+.+....+.-  .+....+.++|+|+++++.+.                             
T Consensus       206 ~l~~~~ey~~~vSvID~etmeV~~qV~V--dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea  283 (635)
T PRK02888        206 DLDDPKKYRSLFTAVDAETMEVAWQVMV--DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEE  283 (635)
T ss_pred             EeecccceeEEEEEEECccceEEEEEEe--CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHH
Confidence            654444  46788888888777666652  334556778888888777651                             


Q ss_pred             -----------CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEE-EeCCCcEEEEeCCcccccCCCCC
Q 009993          337 -----------DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVS-AAGDGKLSLIDVRKLLRSGRPTS  402 (520)
Q Consensus       337 -----------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s-~s~dg~i~vwd~~~~~~~~~~~~  402 (520)
                                 ++.|.+.|.++.... . ..+.....-......+.++|  +++++ +..+.+|.|.|+.+......-..
T Consensus       284 ~vkdGK~~~V~gn~V~VID~~t~~~~-~-~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~  361 (635)
T PRK02888        284 AVKAGKFKTIGGSKVPVVDGRKAANA-G-SALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI  361 (635)
T ss_pred             hhhCCCEEEECCCEEEEEECCccccC-C-cceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence                       123444444430000 0 01111112223446677766  45554 45689999999998644321111


Q ss_pred             CCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCch
Q 009993          403 GKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~  453 (520)
                      ..+.....++      .-|..---++++.++....|---|..|..|++...
T Consensus       362 ~~~~~vvaev------evGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a  406 (635)
T PRK02888        362 KPRDAVVAEP------ELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAA  406 (635)
T ss_pred             CccceEEEee------ccCCCcceEEECCCCCEEEeEeecceeEEEehHHH
Confidence            0000000000      01222223455555667888888999999999874

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.65  E-value=0.0037  Score=64.91  Aligned_cols=135  Identities=18%  Similarity=0.163  Sum_probs=97.7

Q ss_pred             EeCCCeEEEEECCCCcEEEEeCCCCce-EEEEecC-------CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceE
Q 009993          160 SGYDSIVRMWHLEDGFSIASSKPLGCT-IRAVAAD-------KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF  231 (520)
Q Consensus       160 gs~dg~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~-------~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  231 (520)
                      ......|+-.|++.|+.+..+..+... |..+.|+       +...+.|-.+..+..||.+-....+..        ...
T Consensus       500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~--------~~~  571 (794)
T PF08553_consen  500 PNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD--------SQS  571 (794)
T ss_pred             CCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee--------ccc
Confidence            345677889999999999999877644 8888764       345678888899999998643211110        011


Q ss_pred             EeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEcCCeEEEEEC
Q 009993          232 RLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTSGSDVYIWDT  302 (520)
Q Consensus       232 ~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~d~~i~iwd~  302 (520)
                      ..........|++- ...+|++|+.+|.||+||--..+....+. ...+|..+.  .+|+++++.++..+.+++.
T Consensus       572 k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT  646 (794)
T ss_pred             cccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence            11234566778887 56899999999999999954333223333 578999887  8999999999999999886

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PHA02713 hypothetical protein; Provisional

Probab=97.59  E-value=0.006  Score=62.51  Aligned_cols=212  Identities=9%  Similarity=0.024  Sum_probs=112.4

Q ss_pred             eEEEEECCCCcEE--EEeCCCCceEEEEecCCCEEEEEeCC------CcEEEEEcccCcceeeeccCCccccceEEeccC
Q 009993          165 IVRMWHLEDGFSI--ASSKPLGCTIRAVAADKKLLVAGGTD------GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH  236 (520)
Q Consensus       165 ~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~l~sg~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h  236 (520)
                      .+..||..+++-.  ..++...........++...+.|+.+      ..+..||..+..-           .....+...
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-----------~~~~~m~~~  341 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIH-----------VELPPMIKN  341 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeE-----------eeCCCCcch
Confidence            4677888766432  22221111111223577777888754      2366677655421           111111111


Q ss_pred             CCCeEEEEEcCCEEEEEecCC-----eEEEEECCCCcEEEE--eeecc-CEEEEeeCCCEEEEEc-C-------------
Q 009993          237 EGPITSLALDLTRIYSGSWDM-----TVRVWDRALLKCLKV--LRHSD-WVYGLAPHDTTVASTS-G-------------  294 (520)
Q Consensus       237 ~~~v~~l~~~~~~l~s~s~dg-----~v~iwd~~~~~~~~~--~~~~~-~v~~~~~~~~~l~~~~-d-------------  294 (520)
                      .........++...+.|+.++     ++..||..+.+-...  +.... ....+..++.+.+.|+ +             
T Consensus       342 R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~  421 (557)
T PHA02713        342 RCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNS  421 (557)
T ss_pred             hhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccc
Confidence            222233444777778887754     488899876543221  11111 1122336777777766 4             


Q ss_pred             ----------CeEEEEECCCCeee--EEeecccccceEEEEecCCCCEEEEEeCCC------eEEEEEccc-Ccccccee
Q 009993          295 ----------SDVYIWDTNSGCLL--TVVNGAHVGNTKSLARSHTGDFLFTGGEDG------AIHMYEIIN-DCTEANVL  355 (520)
Q Consensus       295 ----------~~i~iwd~~~~~~~--~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg------~i~iwd~~~-~~~~~~~~  355 (520)
                                ..+..||+.+.+-.  ..+..+.. .. +++ .-++++.+.|+.++      .+..||..+ ..    +.
T Consensus       422 ~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~-~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~----W~  494 (557)
T PHA02713        422 IDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI-RP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG----WE  494 (557)
T ss_pred             ccccccccccceEEEECCCCCeEeecCCCCcccc-cC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCC----ee
Confidence                      24778888776422  22211111 11 122 22567777777542      467888876 32    23


Q ss_pred             eeeeecCCcCCEEEEEecCCEEEEEeCCC--cEEEEeCCcc
Q 009993          356 LVATWIPHTGPVNSLAFEFPWLVSAAGDG--KLSLIDVRKL  394 (520)
Q Consensus       356 ~~~~~~~h~~~v~~l~~~~~~l~s~s~dg--~i~vwd~~~~  394 (520)
                      .+..+.........+.+++...++|+.||  .+..||+.+.
T Consensus       495 ~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        495 LITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             EccccCcccccceeEEECCEEEEEeeecceeehhhcCcccc
Confidence            34444444445566667888899999888  7777887763

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.59  E-value=0.02  Score=60.57  Aligned_cols=191  Identities=16%  Similarity=0.111  Sum_probs=117.5

Q ss_pred             ceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEE
Q 009993          185 CTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVR  260 (520)
Q Consensus       185 ~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~  260 (520)
                      ..|.++.  .+.+.++.+..+|.|.+-|..+..              ......-...|.+++|  |...++..+.++++.
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--------------~eivg~vd~GI~aaswS~Dee~l~liT~~~tll  134 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLE--------------LEIVGNVDNGISAASWSPDEELLALITGRQTLL  134 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccc--------------eeeeeeccCceEEEeecCCCcEEEEEeCCcEEE
Confidence            4666666  678888889999999998876642              2223345678999999  667888888877776


Q ss_pred             EEEC----CCCcEE-------------------EEee-------------e---------ccCEEEEe--eCCCEEEEE-
Q 009993          261 VWDR----ALLKCL-------------------KVLR-------------H---------SDWVYGLA--PHDTTVAST-  292 (520)
Q Consensus       261 iwd~----~~~~~~-------------------~~~~-------------~---------~~~v~~~~--~~~~~l~~~-  292 (520)
                      +-+-    -..+.+                   ..++             +         .+.=++++  .+|.++++. 
T Consensus       135 ~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~  214 (1265)
T KOG1920|consen  135 FMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSF  214 (1265)
T ss_pred             EEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEE
Confidence            6432    110100                   0111             0         00111233  678888883 


Q ss_pred             ----cC-CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEE---eCCCeEEEEEcccCccccceeeeeeecCCc
Q 009993          293 ----SG-SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG---GEDGAIHMYEIINDCTEANVLLVATWIPHT  364 (520)
Q Consensus       293 ----~d-~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg---~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  364 (520)
                          .+ ..|++||.+ |..-..-. ...+.-.+++|-|.|..+++-   ..|+.|.+|.-+.-...   .....+....
T Consensus       215 ~~~~~~~RkirV~drE-g~Lns~se-~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg---~f~l~~p~de  289 (1265)
T KOG1920|consen  215 VESETGTRKIRVYDRE-GALNSTSE-PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG---EFVLPFPLDE  289 (1265)
T ss_pred             EeccCCceeEEEeccc-chhhcccC-cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc---ccccCCcccc
Confidence                34 689999987 43322221 234445689999999998874   34567999985543211   1222233334


Q ss_pred             CCEEEEEecC--CEEEE---EeCCCcEEEEeCCcc
Q 009993          365 GPVNSLAFEF--PWLVS---AAGDGKLSLIDVRKL  394 (520)
Q Consensus       365 ~~v~~l~~~~--~~l~s---~s~dg~i~vwd~~~~  394 (520)
                      ..|..++|+.  ..|++   ......|++|-+.+.
T Consensus       290 ~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  290 KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             cchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence            4589999964  56665   444555999998764

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.57  E-value=0.028  Score=54.55  Aligned_cols=150  Identities=20%  Similarity=0.250  Sum_probs=69.2

Q ss_pred             ceEEEEecC-----CC---CEEEEEeCCCeEEEEEccc-CccccceeeeeeecCCcCCEEEEEe-cC-------------
Q 009993          318 NTKSLARSH-----TG---DFLFTGGEDGAIHMYEIIN-DCTEANVLLVATWIPHTGPVNSLAF-EF-------------  374 (520)
Q Consensus       318 ~i~~l~~s~-----~~---~~l~tg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~h~~~v~~l~~-~~-------------  374 (520)
                      .++++.|+.     |+   -.+++|...|.+.+|.+-- ...............+.++|..+.. +.             
T Consensus       137 ~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~  216 (395)
T PF08596_consen  137 YVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAM  216 (395)
T ss_dssp             -EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHH
T ss_pred             CeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHh
Confidence            455666542     22   3688888999999998752 2222222333333345566665552 10             


Q ss_pred             ---------CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccC-cceeeEEEE-----ecCCEEEEe
Q 009993          375 ---------PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG-FECNLLSVD-----IGADRIVCG  439 (520)
Q Consensus       375 ---------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~-----~~~~~l~sg  439 (520)
                               +.++....+..++++...+.....+                  .+.. ......++.     ..+..|++-
T Consensus       217 ~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K------------------~~~~~~~~~~~~vv~~~~~~~~~~Lv~l  278 (395)
T PF08596_consen  217 QGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHK------------------SFDDPFLCSSASVVPTISRNGGYCLVCL  278 (395)
T ss_dssp             HGGGGT----EEEEEE-SSEEEEE-TT---EEEE------------------E-SS-EEEEEEEEEEEE-EEEEEEEEEE
T ss_pred             hccccCCCcCcEEEEEcccceEEEeCCCCcccce------------------eeccccccceEEEEeecccCCceEEEEE
Confidence                     2344445567899998876422111                  1111 112222221     234488888


Q ss_pred             cCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccccc
Q 009993          440 GEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQC  491 (520)
Q Consensus       440 ~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~  491 (520)
                      ..+|.|+++.+..-+++......      .....+......++++|..+.-+
T Consensus       279 ~~~G~i~i~SLP~Lkei~~~~l~------~~~d~~~~~~ssis~~Gdi~~~~  324 (395)
T PF08596_consen  279 FNNGSIRIYSLPSLKEIKSVSLP------PPLDSRRLSSSSISRNGDIFYWT  324 (395)
T ss_dssp             ETTSEEEEEETTT--EEEEEE-S------S---HHHHTT-EE-TTS-EEEE-
T ss_pred             ECCCcEEEEECCCchHhhcccCC------CccccccccccEECCCCCEEEEe
Confidence            99999999999875544332111      11112234567778888866544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.57  E-value=0.0011  Score=65.62  Aligned_cols=160  Identities=13%  Similarity=0.155  Sum_probs=103.4

Q ss_pred             EEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeee
Q 009993          279 VYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV  357 (520)
Q Consensus       279 v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~  357 (520)
                      .+|++..+.+++.|+ -|.+++|+...+.....-..+..+.+...+.+++..++|.|+..|.|.++-+....+.......
T Consensus        38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t  117 (726)
T KOG3621|consen   38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT  117 (726)
T ss_pred             EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence            356667777777777 6788888877766554443345566777788999999999999999999998875433222111


Q ss_pred             eeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCE
Q 009993          358 ATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADR  435 (520)
Q Consensus       358 ~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  435 (520)
                      ..-..|...|+++.|++  ..+++|...|+|..-.+..- ...              ......+-.....|.-++.-..+
T Consensus       118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~-~~~--------------~~~~q~il~~ds~IVQlD~~q~~  182 (726)
T KOG3621|consen  118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSR-QAF--------------LSKSQEILSEDSEIVQLDYLQSY  182 (726)
T ss_pred             cccccCCceEEEEEecccccEEeecCCCceEEEEEechh-hhh--------------ccccceeeccCcceEEeecccce
Confidence            12234788999999976  68999999999999888761 110              11111222334556667665554


Q ss_pred             EEEecCCCeEEEEeCCchH
Q 009993          436 IVCGGEEGIVRIWNFSQAF  454 (520)
Q Consensus       436 l~sg~~Dg~v~iwd~~~~~  454 (520)
                      |..++.- .-.+++.+.+.
T Consensus       183 LLVStl~-r~~Lc~tE~et  200 (726)
T KOG3621|consen  183 LLVSTLT-RCILCQTEAET  200 (726)
T ss_pred             ehHhhhh-hhheeecchhH
Confidence            4444433 33456655443

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=97.56  E-value=4.6e-05  Score=67.89  Aligned_cols=50  Identities=26%  Similarity=0.413  Sum_probs=46.1

Q ss_pred             ccCCCHHHHHHHccC-----CChhhhHHHhhhhhhHHHhhcCcchhhhhhhhhcC
Q 009993           64 ITDLPPALISEILNC-----LDPKELGIVSCVSPILHRLASDHHAWKEFYCERWG  113 (520)
Q Consensus        64 ~~~LP~el~~~i~~~-----L~~~~l~~~s~v~~~~~~~~~~~~lW~~~~~~~~~  113 (520)
                      |..||+|+++.||..     ||..+|.++|+|||.|+..+.++.+|+..|...|+
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~  161 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQ  161 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHH
Confidence            688999999999976     78899999999999999999999999987777886

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.55  E-value=0.04  Score=54.27  Aligned_cols=217  Identities=11%  Similarity=0.035  Sum_probs=111.8

Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEE-cccCcceee
Q 009993          141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWR-AVEVLPHLF  219 (520)
Q Consensus       141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd-~~~~~~~~~  219 (520)
                      ..-....+.++|+|++++.+ .||.-.|+..........-.+  . -..+.. .+.+|+-..+++|.++. .....    
T Consensus        31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~G~g--~-~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~----  101 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAFGSG--L-SFVWSS-RNRYAVLESSSTIKIYKNFKNEV----  101 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEEEE---S-EEEE-T-SSEEEEE-TTS-EEEEETTEE-T----
T ss_pred             CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccccCce--e-EEEEec-CccEEEEECCCeEEEEEcCcccc----
Confidence            33446789999999988885 578888888544443332221  1 123445 45567777788898863 22110    


Q ss_pred             eccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEcCCeE
Q 009993          220 DISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTSGSDV  297 (520)
Q Consensus       220 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~d~~i  297 (520)
                              .....+   ...+..|-. |..|...+. +.|.+||+.+++.+..+.... |..+.  +++.+++..++..+
T Consensus       102 --------~k~i~~---~~~~~~If~-G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i  167 (443)
T PF04053_consen  102 --------VKSIKL---PFSVEKIFG-GNLLGVKSS-DFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSI  167 (443)
T ss_dssp             --------T--------SS-EEEEE--SSSEEEEET-TEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SE
T ss_pred             --------ceEEcC---CcccceEEc-CcEEEEECC-CCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeE
Confidence                    001111   112333332 666666554 489999999999999998654 55555  77889999998888


Q ss_pred             EEEECCCC-----------eeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCC
Q 009993          298 YIWDTNSG-----------CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP  366 (520)
Q Consensus       298 ~iwd~~~~-----------~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  366 (520)
                      .+++.+..           .....+. .-...|.+.+|..+  .++-.+.. .++.  +..+..    ..+..+   ..+
T Consensus       168 ~il~~~~~~~~~~~~~g~e~~f~~~~-E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~----~~i~~l---d~~  234 (443)
T PF04053_consen  168 YILKYNLEAVAAIPEEGVEDAFELIH-EISERIKSGCWVED--CFIYTTSN-HLKY--LVNGET----GIIAHL---DKP  234 (443)
T ss_dssp             EEEEE-HHHHHHBTTTB-GGGEEEEE-EE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEE----EEEEE----SS-
T ss_pred             EEEEecchhcccccccCchhceEEEE-EecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCc----ceEEEc---CCc
Confidence            88876543           0122221 12456778888655  44433333 6665  444421    223333   346


Q ss_pred             EEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993          367 VNSLAFEF--PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       367 v~~l~~~~--~~l~s~s~dg~i~vwd~~~  393 (520)
                      +.=+.+.+  +.+.....|+.|..+.+..
T Consensus       235 ~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  235 LYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             -EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             eEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence            66677766  8888888999998888764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=5.5e-05  Score=67.14  Aligned_cols=44  Identities=39%  Similarity=0.559  Sum_probs=41.5

Q ss_pred             ccCCCHHHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhhh
Q 009993           64 ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEF  107 (520)
Q Consensus        64 ~~~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~~  107 (520)
                      ...||+||+..||+.|..++|.+++.||++|+++++|+.+|..+
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l  141 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL  141 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee
Confidence            56799999999999999999999999999999999999999753

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.54  E-value=0.017  Score=55.05  Aligned_cols=173  Identities=13%  Similarity=0.207  Sum_probs=107.7

Q ss_pred             CeEEEEECCCCcEEEEee--eccCEEEEe----e-----CCCEEEEEcC-----------CeEEEEECCCC-----eeeE
Q 009993          257 MTVRVWDRALLKCLKVLR--HSDWVYGLA----P-----HDTTVASTSG-----------SDVYIWDTNSG-----CLLT  309 (520)
Q Consensus       257 g~v~iwd~~~~~~~~~~~--~~~~v~~~~----~-----~~~~l~~~~d-----------~~i~iwd~~~~-----~~~~  309 (520)
                      ..|++.|..+.+.+..+.  ....+.++.    .     ...++++|..           |.|.++++...     +...
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            468899998888887776  344455544    2     1466666541           77999999884     2222


Q ss_pred             EeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEE
Q 009993          310 VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLI  389 (520)
Q Consensus       310 ~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vw  389 (520)
                      .......++|++++-- ++ .|+++ .++.|.+|++....   .......+.. ...++++...+++++.|.....+.++
T Consensus        82 i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~---~l~~~~~~~~-~~~i~sl~~~~~~I~vgD~~~sv~~~  154 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSK---TLLKKAFYDS-PFYITSLSVFKNYILVGDAMKSVSLL  154 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTS---SEEEEEEE-B-SSSEEEEEEETTEEEEEESSSSEEEE
T ss_pred             EEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcc---cchhhheecc-eEEEEEEeccccEEEEEEcccCEEEE
Confidence            2223467889998865 34 44444 35889999998884   1223333323 33788888888999999998899988


Q ss_pred             eCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEe--cCCEEEEecCCCeEEEEeCCc
Q 009993          390 DVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GADRIVCGGEEGIVRIWNFSQ  452 (520)
Q Consensus       390 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~Dg~v~iwd~~~  452 (520)
                      ..+....        .   +..   ..+  ......++++.+  +++.++.+..+|.|.++....
T Consensus       155 ~~~~~~~--------~---l~~---va~--d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  155 RYDEENN--------K---LIL---VAR--DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEETTTE------------EEE---EEE--ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             EEEccCC--------E---EEE---EEe--cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            6553100        0   000   001  111233445444  456999999999999999863

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.53  E-value=3.5e-05  Score=74.84  Aligned_cols=189  Identities=14%  Similarity=0.193  Sum_probs=117.5

Q ss_pred             CCCeEEEEE----cCCEEEEEecCCeEEEEECCCCcEE-EE--eeeccCEEEEe---eCCCEEEEEcC-----CeEEEEE
Q 009993          237 EGPITSLAL----DLTRIYSGSWDMTVRVWDRALLKCL-KV--LRHSDWVYGLA---PHDTTVASTSG-----SDVYIWD  301 (520)
Q Consensus       237 ~~~v~~l~~----~~~~l~s~s~dg~v~iwd~~~~~~~-~~--~~~~~~v~~~~---~~~~~l~~~~d-----~~i~iwd  301 (520)
                      ...+.|+++    +...++.|..+|.|-+-.++...-. ..  -++....++++   -|.+.|++|-|     ..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            445666666    2245888999999999887654332 22  22666777776   45567777753     5699999


Q ss_pred             CCCC--eee--EEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEec---C
Q 009993          302 TNSG--CLL--TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE---F  374 (520)
Q Consensus       302 ~~~~--~~~--~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~  374 (520)
                      +.++  .+.  ..+..+......+++|..+.+++.+|.....++++|++...       .....-.+..+..+..+   +
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-------~~~~svnTk~vqG~tVdp~~~  208 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-------DSVSSVNTKYVQGITVDPFSP  208 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-------hhhhhhhhhhcccceecCCCC
Confidence            9887  221  12222234456688998888999999999999999998542       11111122344455554   5


Q ss_pred             CEEEEEeCCCcEEEEe-CCcccccCCCCCCCceeeeeecCCCcccccCc----ceeeEEEEecCC---EEEEec-CCCeE
Q 009993          375 PWLVSAAGDGKLSLID-VRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF----ECNLLSVDIGAD---RIVCGG-EEGIV  445 (520)
Q Consensus       375 ~~l~s~s~dg~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~---~l~sg~-~Dg~v  445 (520)
                      +++++-. ||.|.+|| .++.                  +.+...+...    ...++.+++.+.   .+++.. ..++|
T Consensus       209 nY~cs~~-dg~iAiwD~~rni------------------enpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tI  269 (783)
T KOG1008|consen  209 NYFCSNS-DGDIAIWDTYRNI------------------ENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITI  269 (783)
T ss_pred             Cceeccc-cCceeeccchhhh------------------ccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceE
Confidence            7877766 99999999 3332                  1111111111    123566666654   555555 45789


Q ss_pred             EEEeCC
Q 009993          446 RIWNFS  451 (520)
Q Consensus       446 ~iwd~~  451 (520)
                      +++++.
T Consensus       270 rlydi~  275 (783)
T KOG1008|consen  270 RLYDIC  275 (783)
T ss_pred             EEeccc
Confidence            999985

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.52  E-value=0.0073  Score=61.76  Aligned_cols=189  Identities=16%  Similarity=0.168  Sum_probs=104.3

Q ss_pred             EEEE-cCCEEEEEecC------CeEEEEECCCCcEEEEee--eccCEEEEe-eCCCEEEEEc-CC-----eEEEEECCCC
Q 009993          242 SLAL-DLTRIYSGSWD------MTVRVWDRALLKCLKVLR--HSDWVYGLA-PHDTTVASTS-GS-----DVYIWDTNSG  305 (520)
Q Consensus       242 ~l~~-~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~--~~~~v~~~~-~~~~~l~~~~-d~-----~i~iwd~~~~  305 (520)
                      +++. ++...++|+.|      .++..||..+.+-...-.  ....-.++. .+|.+.++|+ ||     ++-.||+.+.
T Consensus       327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~  406 (571)
T KOG4441|consen  327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTN  406 (571)
T ss_pred             cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCC
Confidence            4444 77778888888      367788888776333222  111122233 6777777777 64     4888998876


Q ss_pred             eeeEEeecccccceEEEE-ecCCCCEEEEEeCCC------eEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEE
Q 009993          306 CLLTVVNGAHVGNTKSLA-RSHTGDFLFTGGEDG------AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLV  378 (520)
Q Consensus       306 ~~~~~~~~~~~~~i~~l~-~s~~~~~l~tg~~dg------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~  378 (520)
                      +--..-.  ......... ..-+|.+.++|+.++      ++..||..++.-    ..+..+..-........+++...+
T Consensus       407 ~W~~va~--m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W----~~~~~M~~~R~~~g~a~~~~~iYv  480 (571)
T KOG4441|consen  407 KWTPVAP--MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW----TLIAPMNTRRSGFGVAVLNGKIYV  480 (571)
T ss_pred             cccccCC--CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce----eecCCcccccccceEEEECCEEEE
Confidence            4222111  111111111 122678888888654      467788777632    222233222333334555777888


Q ss_pred             EEeCCCc-----EEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCe-----EEEE
Q 009993          379 SAAGDGK-----LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGI-----VRIW  448 (520)
Q Consensus       379 s~s~dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~-----v~iw  448 (520)
                      .||.|+.     |..||..+..-..             +    .........+-....++...++||.||.     |..|
T Consensus       481 vGG~~~~~~~~~VE~ydp~~~~W~~-------------v----~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~y  543 (571)
T KOG4441|consen  481 VGGFDGTSALSSVERYDPETNQWTM-------------V----APMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECY  543 (571)
T ss_pred             ECCccCCCccceEEEEcCCCCceeE-------------c----ccCccccccccEEEECCEEEEEecccCccccceeEEc
Confidence            8887763     6778877632110             0    1112222333345556778899998884     5556


Q ss_pred             eCCch
Q 009993          449 NFSQA  453 (520)
Q Consensus       449 d~~~~  453 (520)
                      |..+.
T Consensus       544 dp~~d  548 (571)
T KOG4441|consen  544 DPETD  548 (571)
T ss_pred             CCCCC
Confidence            65544

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.51  E-value=0.0083  Score=61.33  Aligned_cols=225  Identities=16%  Similarity=0.152  Sum_probs=127.9

Q ss_pred             CCCEEEEEeCCC------eEEEEECCCCcEEE--EeCCCCceEEEEecCCCEEEEEeCC-C-----cEEEEEcccCccee
Q 009993          153 SAKLLFTSGYDS------IVRMWHLEDGFSIA--SSKPLGCTIRAVAADKKLLVAGGTD-G-----FIHCWRAVEVLPHL  218 (520)
Q Consensus       153 ~~~~l~sgs~dg------~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~sg~~d-g-----~i~vwd~~~~~~~~  218 (520)
                      .+.+++.|+.++      .+..+|..++.-..  .+............++...++|+.| |     .+..||..++.   
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~---  360 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ---  360 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCc---
Confidence            456777887773      57788887774332  2222222222333677888899998 3     35566655542   


Q ss_pred             eeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCC-----eEEEEECCCCcEEEEeeeccCEE---EEeeCCCEEE
Q 009993          219 FDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDM-----TVRVWDRALLKCLKVLRHSDWVY---GLAPHDTTVA  290 (520)
Q Consensus       219 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg-----~v~iwd~~~~~~~~~~~~~~~v~---~~~~~~~~l~  290 (520)
                              ......+............+|...++|+.||     +|-.||..+.+-...-.......   ....++.+.+
T Consensus       361 --------W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi  432 (571)
T KOG4441|consen  361 --------WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYI  432 (571)
T ss_pred             --------eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEE
Confidence                    2222233333333434445888889999886     46678877654333322211222   2236777777


Q ss_pred             EEc-C------CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCe-----EEEEEcccCccccceeeee
Q 009993          291 STS-G------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA-----IHMYEIINDCTEANVLLVA  358 (520)
Q Consensus       291 ~~~-d------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~-----i~iwd~~~~~~~~~~~~~~  358 (520)
                      +|+ +      .++..||+.++.-...-.-.....-..++. -++.+.+.|+.|+.     |..||..+..-    ..+.
T Consensus       433 ~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W----~~v~  507 (571)
T KOG4441|consen  433 IGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQW----TMVA  507 (571)
T ss_pred             EcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCce----eEcc
Confidence            777 4      348889998764322111000111111222 26778888887763     67788777631    3344


Q ss_pred             eecCCcCCEEEEEecCCEEEEEeCCC-----cEEEEeCCc
Q 009993          359 TWIPHTGPVNSLAFEFPWLVSAAGDG-----KLSLIDVRK  393 (520)
Q Consensus       359 ~~~~h~~~v~~l~~~~~~l~s~s~dg-----~i~vwd~~~  393 (520)
                      .+......+.....+....++|+.||     +|..||..+
T Consensus       508 ~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  508 PMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             cCccccccccEEEECCEEEEEecccCccccceeEEcCCCC
Confidence            44445556666677788888888775     455666554

>smart00320 WD40 WD40 repeats

Probab=97.47  E-value=0.00015  Score=43.61  Aligned_cols=36  Identities=28%  Similarity=0.525  Sum_probs=32.4

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEE
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWH  170 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd  170 (520)
                      ...+.+|...|.++.|++++.++++++.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            445678999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PHA02713 hypothetical protein; Provisional

Probab=97.46  E-value=0.016  Score=59.45  Aligned_cols=186  Identities=9%  Similarity=-0.034  Sum_probs=96.6

Q ss_pred             EcCCEEEEEecC------CeEEEEECCCCcEEEEee--ec-cCEEEEeeCCCEEEEEc-CC-----eEEEEECCCCeeeE
Q 009993          245 LDLTRIYSGSWD------MTVRVWDRALLKCLKVLR--HS-DWVYGLAPHDTTVASTS-GS-----DVYIWDTNSGCLLT  309 (520)
Q Consensus       245 ~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~--~~-~~v~~~~~~~~~l~~~~-d~-----~i~iwd~~~~~~~~  309 (520)
                      .++...+.|+.+      ..+..||..+..-...-.  .. ........++++.+.|+ ++     .+..||+.+.+-..
T Consensus       302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~  381 (557)
T PHA02713        302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM  381 (557)
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence            366777777753      357788887764322211  11 12223336777777776 43     48889988763221


Q ss_pred             --EeecccccceEEEEecCCCCEEEEEeCCC-----------------------eEEEEEcccCccccceeeeeeecCCc
Q 009993          310 --VVNGAHVGNTKSLARSHTGDFLFTGGEDG-----------------------AIHMYEIINDCTEANVLLVATWIPHT  364 (520)
Q Consensus       310 --~~~~~~~~~i~~l~~s~~~~~l~tg~~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~h~  364 (520)
                        .+.. .......+.  -+|.+.+.|+.++                       .+..||..+..-    ..+..+....
T Consensus       382 ~~~mp~-~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W----~~v~~m~~~r  454 (557)
T PHA02713        382 LPDMPI-ALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW----ETLPNFWTGT  454 (557)
T ss_pred             CCCCCc-ccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE----eecCCCCccc
Confidence              1111 011111222  2677777777653                       467788766521    2222221112


Q ss_pred             CCEEEEEecCCEEEEEeCCC------cEEEEeCCc-ccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEE
Q 009993          365 GPVNSLAFEFPWLVSAAGDG------KLSLIDVRK-LLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIV  437 (520)
Q Consensus       365 ~~v~~l~~~~~~l~s~s~dg------~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~  437 (520)
                      .....+.+++...+.|+.++      .+..||..+ ..=.             .+.+    +.......-....++...+
T Consensus       455 ~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~-------------~~~~----m~~~r~~~~~~~~~~~iyv  517 (557)
T PHA02713        455 IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE-------------LITT----TESRLSALHTILHDNTIMM  517 (557)
T ss_pred             ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCee-------------Eccc----cCcccccceeEEECCEEEE
Confidence            22233455667667776542      356788775 2110             0011    1112222334455678999


Q ss_pred             EecCCC--eEEEEeCCchH
Q 009993          438 CGGEEG--IVRIWNFSQAF  454 (520)
Q Consensus       438 sg~~Dg--~v~iwd~~~~~  454 (520)
                      +||.||  .+..||..+.+
T Consensus       518 ~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        518 LHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             EeeecceeehhhcCccccc
Confidence            999998  66677776654

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.44  E-value=0.0094  Score=45.29  Aligned_cols=65  Identities=23%  Similarity=0.254  Sum_probs=47.0

Q ss_pred             eEEEEecC---CC-CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe-cCCEEEEEeCCCcEEEEeCC
Q 009993          319 TKSLARSH---TG-DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF-EFPWLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       319 i~~l~~s~---~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~vwd~~  392 (520)
                      |++|++..   +| +.|++|++|..|++|+-..        .+..+.. .+.|+++.. .+..++.+-.+|+|-+|+-.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--------~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~   71 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--------IVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRS   71 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--------EEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCc
Confidence            56666654   32 5799999999999998543        3444433 346666666 56899999999999999764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.31  E-value=0.0038  Score=63.14  Aligned_cols=105  Identities=16%  Similarity=0.139  Sum_probs=79.0

Q ss_pred             EEEEccCCCEEEEEeC----CCeEEEEECCCCcEEEE--eCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeee
Q 009993          147 TVFVLASAKLLFTSGY----DSIVRMWHLEDGFSIAS--SKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD  220 (520)
Q Consensus       147 ~l~~~~~~~~l~sgs~----dg~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  220 (520)
                      -..|+|...+++.++.    .|.|.||- ++|++-..  .+.|. ...|+.|..-.|+.|-.-|.+.+|...+.+     
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~ha-tSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-----   92 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHA-TSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-----   92 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceeh-hhhccChHHHHHhhccccceeEEEecCCce-----
Confidence            3468898898888764    57888885 56664332  22332 236777888899999999999999976542     


Q ss_pred             ccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCC
Q 009993          221 ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL  266 (520)
Q Consensus       221 ~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~  266 (520)
                              .-.....|..+|..+.|  +|+.++++..-|.|.+|....
T Consensus        93 --------~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   93 --------THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             --------eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence                    22234469999999999  889999999999999998764

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.28  E-value=0.15  Score=47.35  Aligned_cols=190  Identities=14%  Similarity=0.100  Sum_probs=114.3

Q ss_pred             EEEccCCCEEEEEe--CCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCc
Q 009993          148 VFVLASAKLLFTSG--YDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE  225 (520)
Q Consensus       148 l~~~~~~~~l~sgs--~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~  225 (520)
                      ++++.||++++...  --..|.|-|+..++.+..+...++.-.-- ..+..+.+-+.||.+.-..+.......       
T Consensus       100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP-~~~~~F~~lC~DGsl~~v~Ld~~Gk~~-------  171 (342)
T PF06433_consen  100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYP-SGNRGFSMLCGDGSLLTVTLDADGKEA-------  171 (342)
T ss_dssp             EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEE-EETTEEEEEETTSCEEEEEETSTSSEE-------
T ss_pred             eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEe-cCCCceEEEecCCceEEEEECCCCCEe-------
Confidence            46788888777653  34568899999988888776554432211 223468888999999888886432111       


Q ss_pred             cccceEEeccCCCCeE-EEEE--cCCEEEEEecCCeEEEEECCCCcEEE--Eee-------------eccCEEEEeeC-C
Q 009993          226 KQNTQFRLWEHEGPIT-SLAL--DLTRIYSGSWDMTVRVWDRALLKCLK--VLR-------------HSDWVYGLAPH-D  286 (520)
Q Consensus       226 ~~~~~~~~~~h~~~v~-~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~--~~~-------------~~~~v~~~~~~-~  286 (520)
                       ......+..-..++. .-.+  .+..++--+.+|.|+--|+.......  .+.             ..-.+.++.+. +
T Consensus       172 -~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~  250 (342)
T PF06433_consen  172 -QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASG  250 (342)
T ss_dssp             -EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTT
T ss_pred             -EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccC
Confidence             111112222222222 1122  44566668888999988887554222  111             12234556543 3


Q ss_pred             CEEEEEc---CC-------eEEEEECCCCeeeEEeecccccceEEEEecCCCC-EEEEE-eCCCeEEEEEcccC
Q 009993          287 TTVASTS---GS-------DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD-FLFTG-GEDGAIHMYEIIND  348 (520)
Q Consensus       287 ~~l~~~~---d~-------~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l~tg-~~dg~i~iwd~~~~  348 (520)
                      ++++.-.   ++       .|-++|+.+++.+.++..  ..++.++..+.+.+ +|++. ..++.+.+||..++
T Consensus       251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l--~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG  322 (342)
T PF06433_consen  251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL--EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG  322 (342)
T ss_dssp             EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE--EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred             eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC--CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence            4433322   12       389999999999999974  34577899988776 55544 46899999999999

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.24  E-value=0.14  Score=45.97  Aligned_cols=178  Identities=15%  Similarity=0.082  Sum_probs=108.2

Q ss_pred             cEEEEEEccCCCEEEEEeCCC--eEEEEECCCCcEEEEeCCC-CceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcceee
Q 009993          144 AVLTVFVLASAKLLFTSGYDS--IVRMWHLEDGFSIASSKPL-GCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLF  219 (520)
Q Consensus       144 ~V~~l~~~~~~~~l~sgs~dg--~v~vwd~~~~~~~~~~~~~-~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~  219 (520)
                      -...+.|..+|.++-+.+.-|  .|+.+|+.+|+......-. ..---.+. .++....---.++...+||..+-.    
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~----  121 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLK----  121 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTE----
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccce----
Confidence            345677877888888877766  7999999999876554311 11111122 133333344557888888876532    


Q ss_pred             eccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee---eccC---EEEEe-eCCCEEEEE
Q 009993          220 DISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDW---VYGLA-PHDTTVAST  292 (520)
Q Consensus       220 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~---v~~~~-~~~~~l~~~  292 (520)
                               ...++ ...+.=..++.+++.|+.......+.++|..+.+....+.   ...+   ++-+. .+|...+-.
T Consensus       122 ---------~~~~~-~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANV  191 (264)
T PF05096_consen  122 ---------KIGTF-PYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANV  191 (264)
T ss_dssp             ---------EEEEE-E-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEE
T ss_pred             ---------EEEEE-ecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEe
Confidence                     22222 2234556778888888888878899999999988888776   2333   34444 455444444


Q ss_pred             c-CCeEEEEECCCCeeeEEeecc--------------cccceEEEEecCCCCEEEEEe
Q 009993          293 S-GSDVYIWDTNSGCLLTVVNGA--------------HVGNTKSLARSHTGDFLFTGG  335 (520)
Q Consensus       293 ~-d~~i~iwd~~~~~~~~~~~~~--------------~~~~i~~l~~s~~~~~l~tg~  335 (520)
                      - ...|...|+.+|+....+...              ...-.+.+++.|..+.+...+
T Consensus       192 W~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  192 WQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             TTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             CCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            4 788999999999988776410              123578999998776555443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=0.15  Score=45.78  Aligned_cols=274  Identities=12%  Similarity=0.059  Sum_probs=163.0

Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEE--eCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeecc
Q 009993          145 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIAS--SKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS  222 (520)
Q Consensus       145 V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  222 (520)
                      +..+.++  +++.+.+..+.-++|.|+.+......  +-.......++.-.|++...+..|.-+.+.|+.+...      
T Consensus        89 ~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpss------  160 (370)
T COG5276          89 FADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSS------  160 (370)
T ss_pred             hheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCC------
Confidence            3444554  66778888888899999986643222  2222345567778899999988666677888876532      


Q ss_pred             CCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEe---eeccCEEEEeeCCCEEEEEc-CCeEE
Q 009993          223 GSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVL---RHSDWVYGLAPHDTTVASTS-GSDVY  298 (520)
Q Consensus       223 ~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~l~~~~-d~~i~  298 (520)
                          ....-++......-..++..|++-+.+..|+-+.+-|+........+   .....+.++.+.+++..... +..+.
T Consensus       161 ----P~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvl  236 (370)
T COG5276         161 ----PQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVL  236 (370)
T ss_pred             ----ceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceE
Confidence                22333344445555778889999999999999999999765443333   34557888885555544444 77788


Q ss_pred             EEECCCCeeeEEeecccccceEEE-EecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEE
Q 009993          299 IWDTNSGCLLTVVNGAHVGNTKSL-ARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWL  377 (520)
Q Consensus       299 iwd~~~~~~~~~~~~~~~~~i~~l-~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l  377 (520)
                      +-|..+......+.......+.++ .+.-.+++......+.-+-+-|+.+...+   .....+......-..+...+.++
T Consensus       237 ivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~sp---fl~ss~~t~g~~a~gi~ay~~y~  313 (370)
T COG5276         237 IVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSP---FLSSSLDTAGYQAAGIRAYGNYN  313 (370)
T ss_pred             EEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCC---chhccccCCCccccceEEecCee
Confidence            888887765555543233333333 22224666666666666777787766321   11222222222445566666666


Q ss_pred             EEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCC
Q 009993          378 VSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       378 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~  451 (520)
                      ..+..+ ...+-+..........              +.+.   .-....++..+.+.+.+...++-+.||+..
T Consensus       314 yiadkn-~g~vV~~s~~s~m~~~--------------~g~~---ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~  369 (370)
T COG5276         314 YIADKN-TGAVVDASPPSMMDKR--------------PGRP---TIGQSCDVSVDTQIIYSTDYNGGLSIIEYL  369 (370)
T ss_pred             EeccCC-ceEEEeCCChhhcccc--------------cCcc---eEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence            666655 4555565543221110              0000   011222334445588888889999999863

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.17  E-value=0.42  Score=50.13  Aligned_cols=303  Identities=12%  Similarity=0.112  Sum_probs=150.9

Q ss_pred             cccEEEEEEccCC------CEEEEEeCCCeEEEEEC-CCCcEEEEe--CC--CCceE--EEEecCCCEEEEEeCCCcEEE
Q 009993          142 TEAVLTVFVLASA------KLLFTSGYDSIVRMWHL-EDGFSIASS--KP--LGCTI--RAVAADKKLLVAGGTDGFIHC  208 (520)
Q Consensus       142 ~~~V~~l~~~~~~------~~l~sgs~dg~v~vwd~-~~~~~~~~~--~~--~~~~v--~~~~~~~~~l~sg~~dg~i~v  208 (520)
                      ...|.|+.++|-|      ++++.|.++..+.+--. .+...+...  .+  -...|  .++..+..+|.++..||.+..
T Consensus       530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~  609 (1096)
T KOG1897|consen  530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY  609 (1096)
T ss_pred             cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence            4689999999742      37888988776655433 333333222  11  11122  234466889999999999887


Q ss_pred             EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cC-CEEEEEecCCeEEEEECCCCcEEEEee--eccCEEEEe
Q 009993          209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DL-TRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA  283 (520)
Q Consensus       209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~  283 (520)
                      +.+.......-+         ..+..--..++.--.|  .+ +.+++++ |+-..+|..+..-+...+.  .-..+..+.
T Consensus       610 fv~d~~tg~lsd---------~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-drP~viY~~n~kLv~spls~kev~~~c~f~  679 (1096)
T KOG1897|consen  610 FVLDINTGQLSD---------RKKVTLGTQPISLRTFSSKSRTAVFALS-DRPTVIYSSNGKLVYSPLSLKEVNHMCPFN  679 (1096)
T ss_pred             EEEEcccceEcc---------ccccccCCCCcEEEEEeeCCceEEEEeC-CCCEEEEecCCcEEEeccchHHhhhhcccc
Confidence            655433211111         1111112334443344  33 3444444 4555566543322222222  222233333


Q ss_pred             --eCCCEEEEEcCCeEEEEECCCCee--eEEeecccccceEEEEecCCCCEEEEEeCC-----------C---eEEEEEc
Q 009993          284 --PHDTTVASTSGSDVYIWDTNSGCL--LTVVNGAHVGNTKSLARSHTGDFLFTGGED-----------G---AIHMYEI  345 (520)
Q Consensus       284 --~~~~~l~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d-----------g---~i~iwd~  345 (520)
                        .-+..++.+..+.+++.-+..-+.  ++++.  -......+++.+....+++.+..           .   .++++|-
T Consensus       680 s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvp--l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~  757 (1096)
T KOG1897|consen  680 SDAYPDSLASANGGALTIGTIDEIQKLHIRTVP--LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQ  757 (1096)
T ss_pred             cccCCceEEEecCCceEEEEecchhhcceeeec--CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecC
Confidence              335567777777787776654332  23332  44556777777654444444321           1   2455554


Q ss_pred             ccCccccceeeeeeecCC--cCCEEEEEe--cC-CEEEEEeC----------CCcEEEEeCCcccccCCCCCCCceeeee
Q 009993          346 INDCTEANVLLVATWIPH--TGPVNSLAF--EF-PWLVSAAG----------DGKLSLIDVRKLLRSGRPTSGKRVSRVI  410 (520)
Q Consensus       346 ~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~~-~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~  410 (520)
                      ++.+.    .....+...  ...|.++.|  +| .++++|..          .|.|.|+.+....               
T Consensus       758 nTf~v----l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~---------------  818 (1096)
T KOG1897|consen  758 NTFEV----LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN---------------  818 (1096)
T ss_pred             CceeE----EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC---------------
Confidence            44311    111111111  123445556  33 46777654          4666666665411               


Q ss_pred             ecCCCcccccC--cceeeEEEE-ecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCc
Q 009993          411 EVEPPQRMLHG--FECNLLSVD-IGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGR  487 (520)
Q Consensus       411 ~~~~~~~~~~~--~~~~v~~~~-~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  487 (520)
                          .....+.  -.+.+.++. ++++++|.-+  ..|++|++.++++++......          .....+...-.|..
T Consensus       819 ----~L~~v~e~~v~Gav~aL~~fngkllA~In--~~vrLye~t~~~eLr~e~~~~----------~~~~aL~l~v~gde  882 (1096)
T KOG1897|consen  819 ----SLELVAETVVKGAVYALVEFNGKLLAGIN--QSVRLYEWTTERELRIECNIS----------NPIIALDLQVKGDE  882 (1096)
T ss_pred             ----ceeeeeeeeeccceeehhhhCCeEEEecC--cEEEEEEccccceehhhhccc----------CCeEEEEEEecCcE
Confidence                1111111  123344443 5566665554  589999999987666544332          22345555555555


Q ss_pred             cccc
Q 009993          488 TDQC  491 (520)
Q Consensus       488 ~~~~  491 (520)
                      ++.+
T Consensus       883 I~Vg  886 (1096)
T KOG1897|consen  883 IAVG  886 (1096)
T ss_pred             EEEe
Confidence            5553

>smart00320 WD40 WD40 repeats

Probab=97.17  E-value=0.0014  Score=39.08  Aligned_cols=37  Identities=32%  Similarity=0.653  Sum_probs=31.7

Q ss_pred             eeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEE
Q 009993          307 LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE  344 (520)
Q Consensus       307 ~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd  344 (520)
                      +...+. .|...+.++.|.+++..+++++.|+.+++|+
T Consensus         4 ~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLK-GHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEE-ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            444454 5888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.16  E-value=0.011  Score=61.58  Aligned_cols=137  Identities=11%  Similarity=0.084  Sum_probs=88.1

Q ss_pred             CCEEEEE-eCCCcEEEEEcccCcceeeeccCCccccceEEeccCC-CCeEEEEE-------cCCEEEEEecCCeEEEEEC
Q 009993          194 KKLLVAG-GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE-GPITSLAL-------DLTRIYSGSWDMTVRVWDR  264 (520)
Q Consensus       194 ~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~-------~~~~l~s~s~dg~v~iwd~  264 (520)
                      .++|+.- .....|+-.|++.|.             .+.....|. .+|..++-       .+...+.|-.+..+..||.
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GK-------------VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDp  559 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGK-------------VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDP  559 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCc-------------EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEecc
Confidence            3344433 345677777887763             333333343 33666665       2345677888899999998


Q ss_pred             CCCc--EEE----EeeeccCEEEEe-eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC
Q 009993          265 ALLK--CLK----VLRHSDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE  336 (520)
Q Consensus       265 ~~~~--~~~----~~~~~~~v~~~~-~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~  336 (520)
                      +-..  ++.    .+.......|++ ....+||+|+ +|.|++||- .|..-++...+-..+|..|..+.||++|++.+.
T Consensus       560 R~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~  638 (794)
T PF08553_consen  560 RLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK  638 (794)
T ss_pred             CCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence            8532  222    122445566777 4555677777 999999995 343333443467889999999999999876654


Q ss_pred             CCeEEEEEc
Q 009993          337 DGAIHMYEI  345 (520)
Q Consensus       337 dg~i~iwd~  345 (520)
                       ..+.+++.
T Consensus       639 -tyLlLi~t  646 (794)
T PF08553_consen  639 -TYLLLIDT  646 (794)
T ss_pred             -ceEEEEEE
Confidence             45667765

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.14  E-value=0.22  Score=46.34  Aligned_cols=175  Identities=13%  Similarity=0.064  Sum_probs=102.6

Q ss_pred             CeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEe----------CCCcEEEEEcccCcceeeeccCCccccceEEe
Q 009993          164 SIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGG----------TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL  233 (520)
Q Consensus       164 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  233 (520)
                      +.+.|.|.++++.+..+..--..-..++++++.+++++          ..-.|.+||..+-....           ...+
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~-----------EI~i   85 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTG-----------EIEI   85 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEE-----------EEEE
T ss_pred             ceEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccc-----------eEec
Confidence            47999999999988777644444456789999888753          33458899987753211           1111


Q ss_pred             cc-------CCCCeEEEEEcCCEEEEEe--cCCeEEEEECCCCcEEEEeeeccCEEEEe-eCCCEEEEEcCCeEEEEECC
Q 009993          234 WE-------HEGPITSLALDLTRIYSGS--WDMTVRVWDRALLKCLKVLRHSDWVYGLA-PHDTTVASTSGSDVYIWDTN  303 (520)
Q Consensus       234 ~~-------h~~~v~~l~~~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~d~~i~iwd~~  303 (520)
                      +.       .......+.-++++++..-  --.+|.|-|+..++.+..+..++...-.- ....+...|.||.+.-..+.
T Consensus        86 P~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld  165 (342)
T PF06433_consen   86 PPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLD  165 (342)
T ss_dssp             TTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEET
T ss_pred             CCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEEC
Confidence            11       1122233444777665543  34578888888888888777555433333 34455556669998888887


Q ss_pred             -CCeeeEEee---cccccce-EEEEecCCCCEEEEEeCCCeEEEEEcccCc
Q 009993          304 -SGCLLTVVN---GAHVGNT-KSLARSHTGDFLFTGGEDGAIHMYEIINDC  349 (520)
Q Consensus       304 -~~~~~~~~~---~~~~~~i-~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~  349 (520)
                       .|+...+..   .....++ ..-++...+..++--+.+|.|+--|+....
T Consensus       166 ~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~  216 (342)
T PF06433_consen  166 ADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS  216 (342)
T ss_dssp             STSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS
T ss_pred             CCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc
Confidence             444432211   1111122 222344445555557789999888887764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.11  E-value=0.021  Score=58.06  Aligned_cols=68  Identities=12%  Similarity=0.081  Sum_probs=57.5

Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEE--EEecCCCEEEEEeCCCcEEEEEcc
Q 009993          145 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR--AVAADKKLLVAGGTDGFIHCWRAV  212 (520)
Q Consensus       145 V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~dg~i~vwd~~  212 (520)
                      +++++|+|..-.|+.|-.-|.+.+|...+.+.......|..++.  .++++|..++++..-|.|.+|...
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            46699999988899999999999999887776666667776655  556999999999999999999875

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.05  E-value=0.22  Score=44.81  Aligned_cols=200  Identities=12%  Similarity=0.081  Sum_probs=100.4

Q ss_pred             hhhccccccEEEEEEccCCC-EEEEEeCCCeEEEEECCCCcEEEEeCCC---CceEEEEecCCCEEEEEeCCCcEEEEEc
Q 009993          136 DVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKPL---GCTIRAVAADKKLLVAGGTDGFIHCWRA  211 (520)
Q Consensus       136 ~~l~~h~~~V~~l~~~~~~~-~l~sgs~dg~v~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~l~sg~~dg~i~vwd~  211 (520)
                      +.+.+-.+.+..++|+|+.+ ++++....+.|...+. +|+.++.+.-.   ...-.++..++.++++--.++.+.+.++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            34556667799999999755 5556666788888886 47777766422   2222333355555555545888998887


Q ss_pred             ccCcceeeeccCCccccceEE--e-ccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCC---CcEEEEee---------
Q 009993          212 VEVLPHLFDISGSEKQNTQFR--L-WEHEGPITSLALDL--TRIYSGSWDMTVRVWDRAL---LKCLKVLR---------  274 (520)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~--~-~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~---~~~~~~~~---------  274 (520)
                      ......+-     ........  + ..++..+-.++||.  +.|+.+-...-..+|.+..   ...+....         
T Consensus        94 ~~~~~~~~-----~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~  168 (248)
T PF06977_consen   94 DDDTTSLD-----RADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL  168 (248)
T ss_dssp             ----TT-------EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred             eccccccc-----hhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence            44321100     00001111  1 13566789999944  6777777776666776653   22222211         


Q ss_pred             eccCEEEEe--e-CCCEEEEEc-CCeEEEEECCCCeeeEEeec--cc------ccceEEEEecCCCCEEEEEeCCCeEEE
Q 009993          275 HSDWVYGLA--P-HDTTVASTS-GSDVYIWDTNSGCLLTVVNG--AH------VGNTKSLARSHTGDFLFTGGEDGAIHM  342 (520)
Q Consensus       275 ~~~~v~~~~--~-~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~--~~------~~~i~~l~~s~~~~~l~tg~~dg~i~i  342 (520)
                      ....+.++.  + .+++++.+. +..|..+| .+|+.+..+.-  +.      -.+...|+|.++|++.++ ++-+..++
T Consensus       169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~  246 (248)
T PF06977_consen  169 FVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYR  246 (248)
T ss_dssp             -SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEE
T ss_pred             eeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEE
Confidence            112233444  3 345666666 78899999 66766555442  11      136789999999865554 47666655


Q ss_pred             E
Q 009993          343 Y  343 (520)
Q Consensus       343 w  343 (520)
                      |
T Consensus       247 f  247 (248)
T PF06977_consen  247 F  247 (248)
T ss_dssp             E
T ss_pred             e
Confidence            5

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.75  E-value=0.0052  Score=63.97  Aligned_cols=107  Identities=18%  Similarity=0.228  Sum_probs=76.6

Q ss_pred             cCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccccee
Q 009993          277 DWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL  355 (520)
Q Consensus       277 ~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~  355 (520)
                      ..+.+.+..+..++.|+ .|.+-..|....-........-.++|++++|+.+|.+++.|-.+|.|.+||+..+      +
T Consensus        90 ~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~------k  163 (1206)
T KOG2079|consen   90 AGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA------K  163 (1206)
T ss_pred             cceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC------c
Confidence            34445556666777777 6888888877642211111124679999999999999999999999999999998      6


Q ss_pred             eeeeecCCcCCEEEEEe----cC-CEEEEEeCCCcEEEEeC
Q 009993          356 LVATWIPHTGPVNSLAF----EF-PWLVSAAGDGKLSLIDV  391 (520)
Q Consensus       356 ~~~~~~~h~~~v~~l~~----~~-~~l~s~s~dg~i~vwd~  391 (520)
                      .++.+..|..+.+++-+    +. ..++++...|.  +|.+
T Consensus       164 ~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  164 ILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            77777777777766655    23 46778877776  5544

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.71  E-value=0.53  Score=44.03  Aligned_cols=178  Identities=19%  Similarity=0.200  Sum_probs=93.7

Q ss_pred             EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cC-CEEEEEecCCeEEEEECCCCcEEEEe
Q 009993          196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DL-TRIYSGSWDMTVRVWDRALLKCLKVL  273 (520)
Q Consensus       196 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~-~~l~s~s~dg~v~iwd~~~~~~~~~~  273 (520)
                      ++++--..+.|.-|+..++....              + .+.+.+.++.. +. ..|+++. .| +.+++.+++..+..+
T Consensus        39 L~w~DI~~~~i~r~~~~~g~~~~--------------~-~~p~~~~~~~~~d~~g~Lv~~~-~g-~~~~~~~~~~~~t~~  101 (307)
T COG3386          39 LLWVDILGGRIHRLDPETGKKRV--------------F-PSPGGFSSGALIDAGGRLIACE-HG-VRLLDPDTGGKITLL  101 (307)
T ss_pred             EEEEeCCCCeEEEecCCcCceEE--------------E-ECCCCcccceeecCCCeEEEEc-cc-cEEEeccCCceeEEe
Confidence            34454556677777765542211              1 22333344444 44 4454444 33 567777666553333


Q ss_pred             e---ec---cCEEE--EeeCCCEEEEEcC------------CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEE
Q 009993          274 R---HS---DWVYG--LAPHDTTVASTSG------------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT  333 (520)
Q Consensus       274 ~---~~---~~v~~--~~~~~~~l~~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~t  333 (520)
                      .   ..   ...+.  +.++|.+.++...            |.++.+|. .+..++.+. .+-...+.++||||++.|+.
T Consensus       102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~-~~~~~~NGla~SpDg~tly~  179 (307)
T COG3386         102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD-DDLTIPNGLAFSPDGKTLYV  179 (307)
T ss_pred             ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec-CcEEecCceEECCCCCEEEE
Confidence            2   11   12222  3377777665433            34666665 444444443 45667789999999988877


Q ss_pred             EeCC-CeEEEEEccc-CccccceeeeeeecCCcCCEEEEEec--CCEEEEEeCCC-cEEEEeCC
Q 009993          334 GGED-GAIHMYEIIN-DCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDG-KLSLIDVR  392 (520)
Q Consensus       334 g~~d-g~i~iwd~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg-~i~vwd~~  392 (520)
                      +... +.|+-|++.. ............+....+..-.++.+  +.+.+++..+| .|.+|+..
T Consensus       180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence            7554 7788888763 11111111122222234455555554  34443444444 88999887

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.68  E-value=0.012  Score=57.94  Aligned_cols=73  Identities=16%  Similarity=0.049  Sum_probs=62.1

Q ss_pred             cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEE---EEecCCCEEEEEeCCCcEEEEEcccCc
Q 009993          142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR---AVAADKKLLVAGGTDGFIHCWRAVEVL  215 (520)
Q Consensus       142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~---~~~~~~~~l~sg~~dg~i~vwd~~~~~  215 (520)
                      .-.|.-+.|+|.-.++|++..+|.|.+..+. .+.+.+++.++..++   |+.|||+.|+.|-.||+|++-|++++.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            3467888999999999999999999999987 778888875655554   555999999999999999999998774

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.63  E-value=0.81  Score=45.06  Aligned_cols=144  Identities=16%  Similarity=0.094  Sum_probs=75.1

Q ss_pred             CCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee--------eccCEEEEe-eCCCEEEEEcCCeEEEEECCCCe-
Q 009993          238 GPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR--------HSDWVYGLA-PHDTTVASTSGSDVYIWDTNSGC-  306 (520)
Q Consensus       238 ~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--------~~~~v~~~~-~~~~~l~~~~d~~i~iwd~~~~~-  306 (520)
                      +.|.++.| +...|+....||+++++|+.. +....+.        ....+.... .+...++...++.+++.+-.... 
T Consensus        81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G-~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~  159 (410)
T PF04841_consen   81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFG-EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPV  159 (410)
T ss_pred             CCEEEEEECCCCeEEEEEcCCEEEEEeCCC-ceeechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccc
Confidence            78999999 667888889999999999863 3311111        111122222 22334444445555554332221 


Q ss_pred             eeEEe---ecc----ccc-ceEE-EEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--C
Q 009993          307 LLTVV---NGA----HVG-NTKS-LARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P  375 (520)
Q Consensus       307 ~~~~~---~~~----~~~-~i~~-l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~  375 (520)
                      ..+.+   ...    +.. .... ..++.+....+....++.+.+.+-....      .   + ...+++..++.+|  +
T Consensus       160 ~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~------~---i-~~~~~i~~iavSpng~  229 (410)
T PF04841_consen  160 KLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK------Q---I-DSDGPIIKIAVSPNGK  229 (410)
T ss_pred             hhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc------c---c-cCCCCeEEEEECCCCC
Confidence            11111   100    000 0000 2233444444444555555544422210      0   1 2245889988876  6


Q ss_pred             EEEEEeCCCcEEEEeCC
Q 009993          376 WLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       376 ~l~s~s~dg~i~vwd~~  392 (520)
                      +++.-..+|.+.|....
T Consensus       230 ~iAl~t~~g~l~v~ssD  246 (410)
T PF04841_consen  230 FIALFTDSGNLWVVSSD  246 (410)
T ss_pred             EEEEEECCCCEEEEECc
Confidence            88888889999888654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.63  E-value=0.38  Score=49.02  Aligned_cols=105  Identities=15%  Similarity=0.047  Sum_probs=66.2

Q ss_pred             cCCEEEEEecCCeEEEEECCCCcEEEEeeecc--CEE----------EEeeCCCEEEEEc-CCeEEEEECCCCeeeEEee
Q 009993          246 DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSD--WVY----------GLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVN  312 (520)
Q Consensus       246 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--~v~----------~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~  312 (520)
                      .++.++.++.++.|.-.|..+++.+..+....  .+.          .+...+..++.++ ++.+.-+|.++|+.+....
T Consensus        68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~  147 (527)
T TIGR03075        68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKK  147 (527)
T ss_pred             ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence            46778888888999999999999888775221  111          1222334455555 9999999999999987765


Q ss_pred             cccccceEEEEecC--CCCEEEEEeC------CCeEEEEEcccCcc
Q 009993          313 GAHVGNTKSLARSH--TGDFLFTGGE------DGAIHMYEIINDCT  350 (520)
Q Consensus       313 ~~~~~~i~~l~~s~--~~~~l~tg~~------dg~i~iwd~~~~~~  350 (520)
                      ......-..+.-+|  .+..++++..      +|.|.-+|.++++.
T Consensus       148 ~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~  193 (527)
T TIGR03075       148 NGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKL  193 (527)
T ss_pred             cccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCce
Confidence            32111111111122  1334555432      68899999988854

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.59  E-value=0.71  Score=43.95  Aligned_cols=163  Identities=15%  Similarity=0.099  Sum_probs=78.4

Q ss_pred             ECCCCcEEEEeCCCCceEE-------EEecCCCEEEEEe-CCCc--EEEEEcccCcceeeeccCCccccceEEeccCC--
Q 009993          170 HLEDGFSIASSKPLGCTIR-------AVAADKKLLVAGG-TDGF--IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE--  237 (520)
Q Consensus       170 d~~~~~~~~~~~~~~~~v~-------~~~~~~~~l~sg~-~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~--  237 (520)
                      |..||..+..+........       ++..+|+.|+.++ .||.  +.+.|+.++.              ...+....  
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~--------------i~QLTdg~g~   81 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE--------------ITQLTDGPGD   81 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E--------------EEE---SS-B
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE--------------EEECccCCCC
Confidence            5667777776655444333       4557887665544 4655  5555666653              22222211  


Q ss_pred             CC-eEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee-eccCE---EEE-eeCCCEEEEEc----C-------------
Q 009993          238 GP-ITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWV---YGL-APHDTTVASTS----G-------------  294 (520)
Q Consensus       238 ~~-v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v---~~~-~~~~~~l~~~~----d-------------  294 (520)
                      .. -..++-+.+.++-......|+-.|+++.+....+. ....+   +-+ ..++..++...    +             
T Consensus        82 ~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~  161 (386)
T PF14583_consen   82 NTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREF  161 (386)
T ss_dssp             -TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHH
T ss_pred             CccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHH
Confidence            11 12233355666555555788999999987665555 22222   222 24555554332    1             


Q ss_pred             ------CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCC----C-eEEEEEcccC
Q 009993          295 ------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED----G-AIHMYEIIND  348 (520)
Q Consensus       295 ------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d----g-~i~iwd~~~~  348 (520)
                            ..|.-.|+.+|+....+.  ....+..+.|+|....+++-+..    . .-+||-+++.
T Consensus       162 ~~a~p~~~i~~idl~tG~~~~v~~--~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d  224 (386)
T PF14583_consen  162 YEARPHCRIFTIDLKTGERKVVFE--DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD  224 (386)
T ss_dssp             HHC---EEEEEEETTT--EEEEEE--ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT
T ss_pred             HhhCCCceEEEEECCCCceeEEEe--cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC
Confidence                  136667888887665554  45667788999966555543332    2 2477877655

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.56  E-value=0.01  Score=58.23  Aligned_cols=84  Identities=17%  Similarity=0.182  Sum_probs=55.8

Q ss_pred             eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceE-EEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeee-e
Q 009993          284 PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTK-SLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT-W  360 (520)
Q Consensus       284 ~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~-~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~-~  360 (520)
                      |.-.++|.+. +|.|.+..++ .+.+.+++. +...++ +++|.|||+.+++|-.||+|++.|+.++..      +.. .
T Consensus        30 P~~dLiA~~t~~gelli~R~n-~qRlwtip~-p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~------l~~~~  101 (665)
T KOG4640|consen   30 PKMDLIATRTEKGELLIHRLN-WQRLWTIPI-PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR------LVSFL  101 (665)
T ss_pred             CccchhheeccCCcEEEEEec-cceeEeccC-CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc------eeccc
Confidence            3334445544 4555555554 444555542 555566 999999999999999999999999999842      222 2


Q ss_pred             cCCcCCEEEEEecCC
Q 009993          361 IPHTGPVNSLAFEFP  375 (520)
Q Consensus       361 ~~h~~~v~~l~~~~~  375 (520)
                      ..-...|.++-|++.
T Consensus       102 ~s~e~~is~~~w~~~  116 (665)
T KOG4640|consen  102 FSVETDISKGIWDRI  116 (665)
T ss_pred             cccccchheeecccc
Confidence            233457777877643

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.56  E-value=0.54  Score=42.26  Aligned_cols=177  Identities=15%  Similarity=0.074  Sum_probs=102.2

Q ss_pred             cCCCEEEEEeCCC--cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEE-ecCCeEEEEECCCCc
Q 009993          192 ADKKLLVAGGTDG--FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSG-SWDMTVRVWDRALLK  268 (520)
Q Consensus       192 ~~~~~l~sg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~-s~dg~v~iwd~~~~~  268 (520)
                      .++.++-+.+.-|  .|+.+|+.++...           ....+. ..---..++.-++.|+-- =.++...+||..+.+
T Consensus        54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~-----------~~~~l~-~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~  121 (264)
T PF05096_consen   54 DDGTLYESTGLYGQSSLRKVDLETGKVL-----------QSVPLP-PRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLK  121 (264)
T ss_dssp             ETTEEEEEECSTTEEEEEEEETTTSSEE-----------EEEE-T-TT--EEEEEEETTEEEEEESSSSEEEEEETTTTE
T ss_pred             CCCEEEEeCCCCCcEEEEEEECCCCcEE-----------EEEECC-ccccceeEEEECCEEEEEEecCCeEEEEccccce
Confidence            5566666766665  6888998887421           111111 111222344434444433 356889999999999


Q ss_pred             EEEEeeeccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecc----cccceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993          269 CLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGA----HVGNTKSLARSHTGDFLFTGGEDGAIHMY  343 (520)
Q Consensus       269 ~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~----~~~~i~~l~~s~~~~~l~tg~~dg~i~iw  343 (520)
                      .+.++.....=..+..++..|+.+. ...++++|+.+.+....+.-.    .-..++-+.+. +|...|=.-....|...
T Consensus       122 ~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I  200 (264)
T PF05096_consen  122 KIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI  200 (264)
T ss_dssp             EEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             EEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence            9999987777788888887777766 789999999988776665421    12245666665 56666666667778888


Q ss_pred             EcccCccccceeeee---e------ecCCcCCEEEEEecC---CEEEEEe
Q 009993          344 EIINDCTEANVLLVA---T------WIPHTGPVNSLAFEF---PWLVSAA  381 (520)
Q Consensus       344 d~~~~~~~~~~~~~~---~------~~~h~~~v~~l~~~~---~~l~s~s  381 (520)
                      |..++........-.   .      ..+.....+.|+++|   .+++||-
T Consensus       201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            888874321110000   0      001145689999976   3666663

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.56  E-value=0.0012  Score=61.72  Aligned_cols=45  Identities=27%  Similarity=0.516  Sum_probs=41.8

Q ss_pred             cccCCCHHHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhhh
Q 009993           63 TITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEF  107 (520)
Q Consensus        63 ~~~~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~~  107 (520)
                      .-..||+|+..++|+|||..+|++++++|+.|+.++.|..-|..+
T Consensus        71 ~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~i  115 (483)
T KOG4341|consen   71 ISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHI  115 (483)
T ss_pred             ccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceee
Confidence            456699999999999999999999999999999999999989765

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.55  E-value=0.035  Score=58.21  Aligned_cols=68  Identities=19%  Similarity=0.320  Sum_probs=53.2

Q ss_pred             cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe-----cCCCEEEEEeCCCcEEEEEc
Q 009993          142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-----ADKKLLVAGGTDGFIHCWRA  211 (520)
Q Consensus       142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~-----~~~~~l~sg~~dg~i~vwd~  211 (520)
                      .++|++++|+.+|.+++.|-.+|.|.+||+..++.++.+..|+.+...+-     .++..++++...|.  +|..
T Consensus       130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            57999999999999999999999999999999998888776655544331     44456777776675  5654

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.53  E-value=0.25  Score=44.44  Aligned_cols=202  Identities=14%  Similarity=0.130  Sum_probs=88.3

Q ss_pred             EEEEe--eCCCEEEEEc--CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccce
Q 009993          279 VYGLA--PHDTTVASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV  354 (520)
Q Consensus       279 v~~~~--~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~  354 (520)
                      +..+.  ++.+.|++..  .+.|..++. +|+.++.+...-.+....+++..++.++++--.++.+.++++.........
T Consensus        24 ~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~  102 (248)
T PF06977_consen   24 LSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDR  102 (248)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--E
T ss_pred             ccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccch
Confidence            44554  4434333333  455666665 356666665433566788888877777766656899999998554321111


Q ss_pred             eeeeee-----cCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeE
Q 009993          355 LLVATW-----IPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLL  427 (520)
Q Consensus       355 ~~~~~~-----~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  427 (520)
                      .....+     ..+...+-.++|++  +.|+.+-...-..++.+.....      ......... .... ..........
T Consensus       103 ~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~------~~~~~~~~~-~~~~-~~~~~~~d~S  174 (248)
T PF06977_consen  103 ADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPG------GFDLFVSDD-QDLD-DDKLFVRDLS  174 (248)
T ss_dssp             EEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-------SS--EEEE--HHHH--HT--SS---
T ss_pred             hhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccC------ccceeeccc-cccc-cccceecccc
Confidence            111111     13455689999987  5777777776677777764210      000000000 0000 0011111233


Q ss_pred             EEEecCC---EEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccccc
Q 009993          428 SVDIGAD---RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQC  491 (520)
Q Consensus       428 ~~~~~~~---~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~  491 (520)
                      ++++++.   +++..+....|..+| .+|..+... ...++..-..+.-.+.-.++|.++|...++.
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~-~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSL-SLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEE-E-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEE-EeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence            3333333   666677777777777 333322110 0011110111222346788999999765543

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.51  E-value=0.01  Score=37.52  Aligned_cols=34  Identities=15%  Similarity=0.060  Sum_probs=30.0

Q ss_pred             cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcE
Q 009993          142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS  176 (520)
Q Consensus       142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~  176 (520)
                      ...|.+++|+|..++||.|+.||.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            357999999999999999999999999998 5544

>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]

Probab=96.51  E-value=0.0015  Score=56.92  Aligned_cols=81  Identities=22%  Similarity=0.290  Sum_probs=61.1

Q ss_pred             cccccCCCHHHHHHHccCC-ChhhhHHHhhhhhhHHHhhcCcchhhhhhhhhcCCCCCCCCCCCCCCCcccHHHhhhhhc
Q 009993           61 RSTITDLPPALISEILNCL-DPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELIDVLY  139 (520)
Q Consensus        61 ~~~~~~LP~el~~~i~~~L-~~~~l~~~s~v~~~~~~~~~~~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~l~  139 (520)
                      .-.+.+||.|++..|+.-| |..+|..++++-...+.+.++..+||.++.-.|....-...+..+..-.+.|+++...|+
T Consensus       199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k~~q~dWkqmyf~L~  278 (332)
T KOG3926|consen  199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSKKGQKDWKQMYFQLR  278 (332)
T ss_pred             CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccchhHHHHHHHHH
Confidence            3468999999999998777 899999999999999999999999999866555422222233334444477997766665


Q ss_pred             cc
Q 009993          140 GH  141 (520)
Q Consensus       140 ~h  141 (520)
                      .|
T Consensus       279 r~  280 (332)
T KOG3926|consen  279 RT  280 (332)
T ss_pred             Hh
Confidence            44

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.47  E-value=0.96  Score=44.12  Aligned_cols=188  Identities=18%  Similarity=0.189  Sum_probs=125.3

Q ss_pred             EEEEEccCCC-EEEEEeCCCeEEEEECCCCcEEEEeC-CCCceEEEEecCCCEEEEEeC---CCcEEEEEcccCcceeee
Q 009993          146 LTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRAVAADKKLLVAGGT---DGFIHCWRAVEVLPHLFD  220 (520)
Q Consensus       146 ~~l~~~~~~~-~l~sgs~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~l~sg~~---dg~i~vwd~~~~~~~~~~  220 (520)
                      ..+++++.+. ..++...++.|.+.|..+........ +....-..+.++++.++.+..   ++++.+.|..+...    
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~----  152 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV----  152 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE----
Confidence            4667788777 44455556899999988777666553 344455677788887777665   67888888766532    


Q ss_pred             ccCCccccceEEeccCCCCeEEEEE--cCCEEEEEe-cCCeEEEEECCCCcEEE-E----ee--eccCEEEEeeCCCEEE
Q 009993          221 ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRALLKCLK-V----LR--HSDWVYGLAPHDTTVA  290 (520)
Q Consensus       221 ~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~v~iwd~~~~~~~~-~----~~--~~~~v~~~~~~~~~l~  290 (520)
                               ......-..+ ..+++  +++.++... .+++|.+.|..+..... .    ..  .......+.+++..+.
T Consensus       153 ---------~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~y  222 (381)
T COG3391         153 ---------TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVY  222 (381)
T ss_pred             ---------EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEE
Confidence                     1122222223 56666  667555554 78999999987766653 1    11  2234455668998777


Q ss_pred             EEc-C---CeEEEEECCCCeeeEE-eecccccceEEEEecCCCCEEEEEeC-CCeEEEEEcccC
Q 009993          291 STS-G---SDVYIWDTNSGCLLTV-VNGAHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIIND  348 (520)
Q Consensus       291 ~~~-d---~~i~iwd~~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~tg~~-dg~i~iwd~~~~  348 (520)
                      +.. .   +.+...|..++..... ...+.. ....+.++|+|..+.+... .+.+.+.|..+.
T Consensus       223 V~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         223 VANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             EEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            766 2   4899999988877665 222222 5667899999999888744 488999998876

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.46  E-value=1.6  Score=46.44  Aligned_cols=197  Identities=13%  Similarity=-0.001  Sum_probs=114.1

Q ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCce--------EEEEe------------------cCCCEEEEEeCCCcEE
Q 009993          154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT--------IRAVA------------------ADKKLLVAGGTDGFIH  207 (520)
Q Consensus       154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~--------v~~~~------------------~~~~~l~sg~~dg~i~  207 (520)
                      +..|+.++.++.|.-.|..+|+.+..+......        +..++                  ..+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            567888888999999999999998877543211        01111                  1345888999999999


Q ss_pred             EEEcccCcceeeeccCCccccceEEeccCCC---CeEE-EEEcCCEEEEEec----------CCeEEEEECCCCcEEEEe
Q 009993          208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEG---PITS-LALDLTRIYSGSW----------DMTVRVWDRALLKCLKVL  273 (520)
Q Consensus       208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~-l~~~~~~l~s~s~----------dg~v~iwd~~~~~~~~~~  273 (520)
                      -.|..+|+.+-- ............+.....   .+++ -.+.++.++.|+.          +|.|+-+|.++|+.+..+
T Consensus       274 ALDA~TGk~~W~-fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCED-FGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEE-ecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999998864321 100000000000000000   0111 1124556666643          689999999999988776


Q ss_pred             eec----------cC-----------EEEEeeCCCEEEEEc-------------------CCeEEEEECCCCeeeEEeec
Q 009993          274 RHS----------DW-----------VYGLAPHDTTVASTS-------------------GSDVYIWDTNSGCLLTVVNG  313 (520)
Q Consensus       274 ~~~----------~~-----------v~~~~~~~~~l~~~~-------------------d~~i~iwd~~~~~~~~~~~~  313 (520)
                      ...          +.           ..++.+...+++.+.                   .+.|.-.|.++|+....+..
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~  432 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT  432 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence            411          10           112222223332211                   24577788899988877764


Q ss_pred             ccc--------cceEEEEecC-CCC---EEEEEeCCCeEEEEEcccCccc
Q 009993          314 AHV--------GNTKSLARSH-TGD---FLFTGGEDGAIHMYEIINDCTE  351 (520)
Q Consensus       314 ~~~--------~~i~~l~~s~-~~~---~l~tg~~dg~i~iwd~~~~~~~  351 (520)
                      .|.        .+..-+.+.. +|+   .++.++.+|.++++|.++++..
T Consensus       433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l  482 (764)
T TIGR03074       433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI  482 (764)
T ss_pred             cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence            221        1111222322 553   7889999999999999998654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.44  E-value=0.19  Score=44.87  Aligned_cols=197  Identities=19%  Similarity=0.278  Sum_probs=104.0

Q ss_pred             hhhccccccEEEEEEccCCCEEEEEeCC-----CeEEEEECCCC-cEEEEeCCCCceEE--EEecCCCEEEEEeCCCcEE
Q 009993          136 DVLYGHTEAVLTVFVLASAKLLFTSGYD-----SIVRMWHLEDG-FSIASSKPLGCTIR--AVAADKKLLVAGGTDGFIH  207 (520)
Q Consensus       136 ~~l~~h~~~V~~l~~~~~~~~l~sgs~d-----g~v~vwd~~~~-~~~~~~~~~~~~v~--~~~~~~~~l~sg~~dg~i~  207 (520)
                      +.+.||.      .|+|||.+|++.-.|     |.|-|||...+ ..+..+..|...-.  .+.+||+.++.+.  |-|.
T Consensus       113 RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIe  184 (366)
T COG3490         113 RHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIE  184 (366)
T ss_pred             ceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--Ccee
Confidence            4456664      489999999987544     67999998755 45566666654443  4458999888764  3333


Q ss_pred             EE--------EcccCcceeeecc-CCccccceEEec--cCCCCeEEEEEcC-CEEEEEe-cCC-----eEEEEECCCCcE
Q 009993          208 CW--------RAVEVLPHLFDIS-GSEKQNTQFRLW--EHEGPITSLALDL-TRIYSGS-WDM-----TVRVWDRALLKC  269 (520)
Q Consensus       208 vw--------d~~~~~~~~~~~~-~~~~~~~~~~~~--~h~~~v~~l~~~~-~~l~s~s-~dg-----~v~iwd~~~~~~  269 (520)
                      .-        |+.+.++.+.-+. ..........+.  .+.-.|..++.++ +.+..|+ ..|     --.+=-...++.
T Consensus       185 thpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~  264 (366)
T COG3490         185 THPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEP  264 (366)
T ss_pred             cccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCc
Confidence            22        2333322222221 111111222232  3455666666622 2233322 111     111111223333


Q ss_pred             EEEee--------eccCEEEEe--eCCCEEEEEc--CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCC
Q 009993          270 LKVLR--------HSDWVYGLA--PHDTTVASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED  337 (520)
Q Consensus       270 ~~~~~--------~~~~v~~~~--~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d  337 (520)
                      +..+.        ....|-+++  .+..+++..+  ++...+||..+|..+..-..   ..+..++  +...-+++.+.+
T Consensus       265 l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l---~daaGva--~~~~gf~vssg~  339 (366)
T COG3490         265 LEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL---PDAAGVA--AAKGGFAVSSGQ  339 (366)
T ss_pred             CcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc---cccccce--eccCceEEecCC
Confidence            33332        234556666  3356666666  57789999999987765431   1122222  234446666778


Q ss_pred             CeEEEEEc
Q 009993          338 GAIHMYEI  345 (520)
Q Consensus       338 g~i~iwd~  345 (520)
                      |.+.++.-
T Consensus       340 G~~~~~s~  347 (366)
T COG3490         340 GRIIFYSR  347 (366)
T ss_pred             ceEEeccc
Confidence            88888743

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.36  E-value=0.0078  Score=51.67  Aligned_cols=138  Identities=15%  Similarity=0.068  Sum_probs=77.1

Q ss_pred             EEEEEecCCeEEEEECCCCcEEEEee--eccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEE-EEe
Q 009993          249 RIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKS-LAR  324 (520)
Q Consensus       249 ~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~-l~~  324 (520)
                      .+..-+.||.|+-++++..+....-.  +... ..+..-+..+++|. +|.|++|+.............-...|.+ +.-
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~  110 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN  110 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence            35566778999888876543221111  2222 44444455566666 9999999987321111111111222222 222


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCc-CCEEEEEe--cCCEEEEE--eCCCcEEEEeCCc
Q 009993          325 SHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT-GPVNSLAF--EFPWLVSA--AGDGKLSLIDVRK  393 (520)
Q Consensus       325 s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~-~~v~~l~~--~~~~l~s~--s~dg~i~vwd~~~  393 (520)
                      ..++.+..+++.||.|+.|++...      +.+.....|. .++..+..  +...++.+  |.|..++.|++..
T Consensus       111 ~~~~~~~c~~~~dg~ir~~n~~p~------k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  111 GRDSSLGCVGAQDGRIRACNIKPN------KVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccccceeEEeccCCceeeeccccC------ceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            335568889999999999998877      4455555555 33333333  23455555  6666666666654

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.25  E-value=0.089  Score=50.97  Aligned_cols=139  Identities=17%  Similarity=0.162  Sum_probs=91.7

Q ss_pred             EEEEeCCCeEEEEECCCCcEEEEeCCCCc-eEEEEecCCC-------EEEEEeCCCcEEEEEcccCcceeeeccCCcccc
Q 009993          157 LFTSGYDSIVRMWHLEDGFSIASSKPLGC-TIRAVAADKK-------LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQN  228 (520)
Q Consensus       157 l~sgs~dg~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~-------~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~  228 (520)
                      |.++.....++--|++.|+.+..+.-+.. ++..+.|+.+       .-+.|-.|..|.-||.+-........       
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~-------  421 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV-------  421 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee-------
Confidence            34555556678889999999988877665 5556655432       34557778889999975321110000       


Q ss_pred             ceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEE-ee-eccCEEEEe--eCCCEEEEEcCCeEEEEECC
Q 009993          229 TQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKV-LR-HSDWVYGLA--PHDTTVASTSGSDVYIWDTN  303 (520)
Q Consensus       229 ~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~-~~~~v~~~~--~~~~~l~~~~d~~i~iwd~~  303 (520)
                      ....-........|++- ...++++||.+|-|++||- .+...++ ++ ...+|..+.  .+|+++++.++..+.+.++.
T Consensus       422 ~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             eeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence            00001112344556666 6689999999999999997 4433333 33 677888776  89999999999998888764

>PHA03098 kelch-like protein; Provisional

Probab=96.16  E-value=0.47  Score=48.81  Aligned_cols=183  Identities=11%  Similarity=0.021  Sum_probs=90.5

Q ss_pred             CCCEEEEEeCCC------eEEEEECCCCcEEEE--eCCCCceEEEEecCCCEEEEEeCCC-----cEEEEEcccCcceee
Q 009993          153 SAKLLFTSGYDS------IVRMWHLEDGFSIAS--SKPLGCTIRAVAADKKLLVAGGTDG-----FIHCWRAVEVLPHLF  219 (520)
Q Consensus       153 ~~~~l~sgs~dg------~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~sg~~dg-----~i~vwd~~~~~~~~~  219 (520)
                      ++.+++.|+.++      .+..||..+++-...  +............++..++.|+.++     .+..||..+..-.  
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~--  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWR--  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCcee--
Confidence            566777777543      467788776644221  1111111222335677778888653     3566776554211  


Q ss_pred             eccCCccccceEEeccCCCCeEEEEEcCCEEEEEecC------CeEEEEECCCCcEEEEeeec---cCEEEEeeCCCEEE
Q 009993          220 DISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD------MTVRVWDRALLKCLKVLRHS---DWVYGLAPHDTTVA  290 (520)
Q Consensus       220 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~l~  290 (520)
                               ....+............++...+.|+.+      ..+..||..+.+-...-..+   .....+..++.+++
T Consensus       372 ---------~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv  442 (534)
T PHA03098        372 ---------EEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYV  442 (534)
T ss_pred             ---------eCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEE
Confidence                     1111111111112233466666777632      45888998765433221111   11122335666666


Q ss_pred             EEc-C--------CeEEEEECCCCeeeEEeeccc-ccceEEEEecCCCCEEEEEeCC-----CeEEEEEcccC
Q 009993          291 STS-G--------SDVYIWDTNSGCLLTVVNGAH-VGNTKSLARSHTGDFLFTGGED-----GAIHMYEIIND  348 (520)
Q Consensus       291 ~~~-d--------~~i~iwd~~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~tg~~d-----g~i~iwd~~~~  348 (520)
                      .|+ +        ..+.+||+.+++-...-.... ......+.+  ++.+++.|+.+     +.+.+||..+.
T Consensus       443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             ECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            665 2        138889988764322111011 111112222  66777777664     46888887765

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.05  E-value=1.1  Score=46.16  Aligned_cols=69  Identities=14%  Similarity=0.081  Sum_probs=39.4

Q ss_pred             ccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEE
Q 009993          316 VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSL  388 (520)
Q Consensus       316 ~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~v  388 (520)
                      ...+..+.|.+++.++ ++..++...+|.+.-.....   ....-.....++..|+-++..++....+|.+.+
T Consensus       496 ~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~---~~~~~~n~~~~v~~vaa~~~~iyv~~~~g~~~l  564 (591)
T PRK13616        496 GDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNS---DALPSRNLSAPVVAVAASPSTVYVTDARAVLQL  564 (591)
T ss_pred             CCccccceEecCCEEE-EEecCCCCceEEEecCCccc---cccCCCCccCceEEEecCCceEEEEcCCceEEe
Confidence            3346788999888854 55555555556554332111   110111235678888887777777777774433

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.04  E-value=2.6  Score=44.85  Aligned_cols=68  Identities=19%  Similarity=0.074  Sum_probs=48.2

Q ss_pred             cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEE-------------EEe----eCCCEEEEEc-----------CCeE
Q 009993          246 DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVY-------------GLA----PHDTTVASTS-----------GSDV  297 (520)
Q Consensus       246 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~-------------~~~----~~~~~l~~~~-----------d~~i  297 (520)
                      .++.++.++.|+.+.-.|.++|+....+...+.|.             .+.    ..+..+++++           +|.|
T Consensus       259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       259 CARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             cCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            44688999999999999999999987765333221             011    1233444442           4779


Q ss_pred             EEEECCCCeeeEEeec
Q 009993          298 YIWDTNSGCLLTVVNG  313 (520)
Q Consensus       298 ~iwd~~~~~~~~~~~~  313 (520)
                      +-+|.++|+.+..+..
T Consensus       339 ~A~Da~TGkl~W~~~~  354 (764)
T TIGR03074       339 RAFDVNTGALVWAWDP  354 (764)
T ss_pred             EEEECCCCcEeeEEec
Confidence            9999999999988864

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PHA03098 kelch-like protein; Provisional

Probab=96.02  E-value=0.26  Score=50.72  Aligned_cols=186  Identities=11%  Similarity=0.059  Sum_probs=91.5

Q ss_pred             EecCCCEEEEEeCCC------cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecC-----Ce
Q 009993          190 VAADKKLLVAGGTDG------FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD-----MT  258 (520)
Q Consensus       190 ~~~~~~~l~sg~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~  258 (520)
                      +..++..++.|+.++      .+..||..+.....           ...+.........+..++..++.|+.+     ..
T Consensus       291 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-----------~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~  359 (534)
T PHA03098        291 VVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-----------VPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNT  359 (534)
T ss_pred             EEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-----------CCCCCcccccceEEEECCEEEEEeCCCCCEecce
Confidence            346677777777643      46667765543211           001111112223344477777777765     35


Q ss_pred             EEEEECCCCcEEEEee--eccC-EEEEeeCCCEEEEEc-C------CeEEEEECCCCeeeE--EeecccccceEEEEecC
Q 009993          259 VRVWDRALLKCLKVLR--HSDW-VYGLAPHDTTVASTS-G------SDVYIWDTNSGCLLT--VVNGAHVGNTKSLARSH  326 (520)
Q Consensus       259 v~iwd~~~~~~~~~~~--~~~~-v~~~~~~~~~l~~~~-d------~~i~iwd~~~~~~~~--~~~~~~~~~i~~l~~s~  326 (520)
                      +..||..+.+-...-.  .+.. ......++++.+.|+ +      ..+..||+.+++-..  .+..+..+  .+++. .
T Consensus       360 v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~--~~~~~-~  436 (534)
T PHA03098        360 VESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG--GCAIY-H  436 (534)
T ss_pred             EEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC--ceEEE-E
Confidence            7788887654332211  1111 112235666666665 2      358899988754221  11111111  12222 2


Q ss_pred             CCCEEEEEeCCC--------eEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCC-----CcEEEEeCCc
Q 009993          327 TGDFLFTGGEDG--------AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGD-----GKLSLIDVRK  393 (520)
Q Consensus       327 ~~~~l~tg~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~  393 (520)
                      ++.+++.|+.++        .+.+||..+..-    ..+..+.........+.+++..++.|+.+     ..|.+||..+
T Consensus       437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W----~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKW----TELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             CCEEEEECCccCCCCCcccceEEEecCCCCce----eeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCC
Confidence            566666676432        378888876521    11111111111223344566666777654     4677888765

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.01  E-value=0.94  Score=43.64  Aligned_cols=232  Identities=12%  Similarity=0.047  Sum_probs=102.2

Q ss_pred             CCEEEEEe-cCCeEEEEECCC----CcEEEEee----ec-cCE----EEEe-eCCCEEEEEc---C----CeEEEEECCC
Q 009993          247 LTRIYSGS-WDMTVRVWDRAL----LKCLKVLR----HS-DWV----YGLA-PHDTTVASTS---G----SDVYIWDTNS  304 (520)
Q Consensus       247 ~~~l~s~s-~dg~v~iwd~~~----~~~~~~~~----~~-~~v----~~~~-~~~~~l~~~~---d----~~i~iwd~~~  304 (520)
                      .++|+..+ ..+.|+|.|+.+    .+..+++.    +. ..+    +.-+ ++|+.++++-   +    |.+.++|-++
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t  166 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET  166 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence            46677766 668899999873    45555554    11 111    1112 6787877753   2    5699999998


Q ss_pred             CeeeEEeeccc--ccceEEEEecCCCCEEEEEeC--------------------CCeEEEEEcccCccccceeeeeeecC
Q 009993          305 GCLLTVVNGAH--VGNTKSLARSHTGDFLFTGGE--------------------DGAIHMYEIINDCTEANVLLVATWIP  362 (520)
Q Consensus       305 ~~~~~~~~~~~--~~~i~~l~~s~~~~~l~tg~~--------------------dg~i~iwd~~~~~~~~~~~~~~~~~~  362 (520)
                      .+.........  ..--+.+-+.|..+.++|...                    ..++++||+.+.      +.++++.-
T Consensus       167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r------~~~Q~idL  240 (461)
T PF05694_consen  167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR------KLLQTIDL  240 (461)
T ss_dssp             --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT------EEEEEEES
T ss_pred             ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC------cEeeEEec
Confidence            88777765422  334456778888888887642                    457999999998      55655543


Q ss_pred             C--cCCEEEEEe--cC--C-EEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCc-------cc---ccCccee
Q 009993          363 H--TGPVNSLAF--EF--P-WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQ-------RM---LHGFECN  425 (520)
Q Consensus       363 h--~~~v~~l~~--~~--~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~  425 (520)
                      -  ...+..|.|  +|  . -++.+.-.++|..|--....   .+    ....+..+....       .+   +.....-
T Consensus       241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g---~W----~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~L  313 (461)
T PF05694_consen  241 GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDG---EW----AAEKVIDIPAKKVEGWILPEMLKPFGAVPPL  313 (461)
T ss_dssp             -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETT---EE----EEEEEEEE--EE--SS---GGGGGG-EE---
T ss_pred             CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCC---Ce----eeeEEEECCCcccCcccccccccccccCCCc
Confidence            2  234566777  44  2 33344445555555432110   00    011111111110       11   1111222


Q ss_pred             eE--EEEecCCE-EEEecCCCeEEEEeCCchHhHHHHhhhhc-cc--------ccchhhhhccceeeeccCCCccccc
Q 009993          426 LL--SVDIGADR-IVCGGEEGIVRIWNFSQAFEIERRARALR-GI--------RLENRMRRRKLQTEMSSKGGRTDQC  491 (520)
Q Consensus       426 v~--~~~~~~~~-l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~s~~g~~~~~~  491 (520)
                      ++  .++.+.++ .++.=.+|.||.||+++....+...+..- +.        ...++....++-+..|.||+|+-.+
T Consensus       314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred             eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence            33  35566664 45555799999999998766543322111 10        0112333446788999999998764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.00  E-value=1.7  Score=45.87  Aligned_cols=143  Identities=15%  Similarity=0.112  Sum_probs=98.4

Q ss_pred             CCEEEEEec----------CCeEEEEECCCCcEEEEe---eeccCEEEEeeCCCEEEEEcCCeEEEEECCCCeeeEEeec
Q 009993          247 LTRIYSGSW----------DMTVRVWDRALLKCLKVL---RHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNG  313 (520)
Q Consensus       247 ~~~l~s~s~----------dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~  313 (520)
                      +.++++|..          .|.|.++.+.....+...   .-.+.+.++..-+..+++|-+..|++|+..+.+.++.-. 
T Consensus       787 ~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~In~~vrLye~t~~~eLr~e~-  865 (1096)
T KOG1897|consen  787 NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGINQSVRLYEWTTERELRIEC-  865 (1096)
T ss_pred             ceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEecCcEEEEEEccccceehhhh-
Confidence            356666642          477888877764333333   367778888844445555668899999999886665543 


Q ss_pred             ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe-cCCEEEEEeCCCcEEEEeCC
Q 009993          314 AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF-EFPWLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       314 ~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~vwd~~  392 (520)
                      .+..++..+...-.|+.+++|..=+.+.+-..+..+-  +...+. -.-+..+.+++.+ +.+.++.+..+|.+.+-...
T Consensus       866 ~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg--~f~evA-rD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d  942 (1096)
T KOG1897|consen  866 NISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEG--NFEEVA-RDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKD  942 (1096)
T ss_pred             cccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCC--ceEEee-hhhCccceeeEEEecCceEEeecccccEEEEEec
Confidence            5888899999999999999999888887766655421  111111 1235567777777 66777788888988887776


Q ss_pred             c
Q 009993          393 K  393 (520)
Q Consensus       393 ~  393 (520)
                      +
T Consensus       943 ~  943 (1096)
T KOG1897|consen  943 S  943 (1096)
T ss_pred             C
Confidence            4

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.96  E-value=0.014  Score=50.16  Aligned_cols=102  Identities=13%  Similarity=0.121  Sum_probs=63.3

Q ss_pred             cCCEEEEEecCCeEEEEECCCCcEEEEe--eeccCEEEEee---CCCEEEEEc-CCeEEEEECCCCeeeEEeecccc-cc
Q 009993          246 DLTRIYSGSWDMTVRVWDRALLKCLKVL--RHSDWVYGLAP---HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHV-GN  318 (520)
Q Consensus       246 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~---~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~-~~  318 (520)
                      -+..++.|+.+|.|.+|+..........  .....|.++-|   ++.+..++. +|.|+.|++.-++.+-... .|. .+
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g-~h~~~~  147 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG-QHNFES  147 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeec-cccCCC
Confidence            4567899999999999987621111111  12233333333   333555555 9999999998887776654 465 45


Q ss_pred             eEEEEecCCCCEEEEE--eCCCeEEEEEcccC
Q 009993          319 TKSLARSHTGDFLFTG--GEDGAIHMYEIIND  348 (520)
Q Consensus       319 i~~l~~s~~~~~l~tg--~~dg~i~iwd~~~~  348 (520)
                      +.....+..+.+++.+  |.|..++.|++..-
T Consensus       148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             cceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            5555555556666666  66677777776544

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.93  E-value=0.026  Score=35.72  Aligned_cols=32  Identities=22%  Similarity=0.364  Sum_probs=28.9

Q ss_pred             cccceEEEEecCCCCEEEEEeCCCeEEEEEcc
Q 009993          315 HVGNTKSLARSHTGDFLFTGGEDGAIHMYEII  346 (520)
Q Consensus       315 ~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~  346 (520)
                      ....|..++|+|..+++|.|+.+|.|.+|.+.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            34579999999999999999999999999983

>PHA02790 Kelch-like protein; Provisional

Probab=95.78  E-value=0.64  Score=46.96  Aligned_cols=181  Identities=12%  Similarity=0.022  Sum_probs=88.9

Q ss_pred             CCCEEEEEeCCC-----eEEEEECCCCcEEE--EeCCCCceEEEEecCCCEEEEEeCCC--cEEEEEcccCcceeeeccC
Q 009993          153 SAKLLFTSGYDS-----IVRMWHLEDGFSIA--SSKPLGCTIRAVAADKKLLVAGGTDG--FIHCWRAVEVLPHLFDISG  223 (520)
Q Consensus       153 ~~~~l~sgs~dg-----~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~sg~~dg--~i~vwd~~~~~~~~~~~~~  223 (520)
                      ++.+++.|+.++     ++..||..++.-..  .+............++...+.|+.++  .+..||..++.        
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~--------  342 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAA--------  342 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCe--------
Confidence            456667777543     46678877654322  22111111222336777778887643  46667754432        


Q ss_pred             CccccceEEeccCCCCeEEEEEcCCEEEEEecCC---eEEEEECCCCcEEEEee--ecc-CEEEEeeCCCEEEEEcCCeE
Q 009993          224 SEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDM---TVRVWDRALLKCLKVLR--HSD-WVYGLAPHDTTVASTSGSDV  297 (520)
Q Consensus       224 ~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg---~v~iwd~~~~~~~~~~~--~~~-~v~~~~~~~~~l~~~~d~~i  297 (520)
                         ......+............++...+.|+.++   ++..||.++.+-...-.  .+. ....+..++.+.+.|  |.+
T Consensus       343 ---W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~  417 (480)
T PHA02790        343 ---WVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNA  417 (480)
T ss_pred             ---EEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--Cce
Confidence               1111111111122233344777777777653   47788877654332211  111 112223566666655  356


Q ss_pred             EEEECCCCeeeEEeeccc-ccceEEEEecCCCCEEEEEeCC-----CeEEEEEcccC
Q 009993          298 YIWDTNSGCLLTVVNGAH-VGNTKSLARSHTGDFLFTGGED-----GAIHMYEIIND  348 (520)
Q Consensus       298 ~iwd~~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~tg~~d-----g~i~iwd~~~~  348 (520)
                      .+||+++++=...-...+ .... +++. -++++.+.|+.+     ..+..||..++
T Consensus       418 e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        418 EFYCESSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             EEecCCCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence            778887654221111011 1112 2222 267777777754     34667776655

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.74  E-value=0.6  Score=39.84  Aligned_cols=168  Identities=19%  Similarity=0.162  Sum_probs=98.0

Q ss_pred             CCCEEEEEeC--CCeEEEEECCCCcEEEEeCCCCceEE--EEecCCCEEEE-EeCCCcEEEEEcccCcceeeeccCCccc
Q 009993          153 SAKLLFTSGY--DSIVRMWHLEDGFSIASSKPLGCTIR--AVAADKKLLVA-GGTDGFIHCWRAVEVLPHLFDISGSEKQ  227 (520)
Q Consensus       153 ~~~~l~sgs~--dg~v~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~l~s-g~~dg~i~vwd~~~~~~~~~~~~~~~~~  227 (520)
                      +|.++.+.+.  ...|++||+.+|+.+.+..-....+.  .+..-++.+.. --.+|.-..+|..+-+            
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~------------  122 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE------------  122 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhh------------
Confidence            4566666654  34699999999988765432211111  11122333332 3346666677765532            


Q ss_pred             cceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee---eccCEEEEe----eCCCEEEEEc-CCeEEE
Q 009993          228 NTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA----PHDTTVASTS-GSDVYI  299 (520)
Q Consensus       228 ~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~----~~~~~l~~~~-d~~i~i  299 (520)
                       +... ....+.=..++.++..|+.++...+++.-|.++.....++.   ...+|..+.    -+|...+-.- ...|..
T Consensus       123 -~lg~-~~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~r  200 (262)
T COG3823         123 -ELGR-FSYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIAR  200 (262)
T ss_pred             -hhcc-cccCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEE
Confidence             1111 12345556777788778888777888888887766655554   333444333    4555554444 566777


Q ss_pred             EECCCCeeeEEee-----------cccccceEEEEecCCCC-EEEEE
Q 009993          300 WDTNSGCLLTVVN-----------GAHVGNTKSLARSHTGD-FLFTG  334 (520)
Q Consensus       300 wd~~~~~~~~~~~-----------~~~~~~i~~l~~s~~~~-~l~tg  334 (520)
                      .|+.+|+.+..+.           ..+..-.+.+++.|+++ +++||
T Consensus       201 I~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         201 IDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            7777777665543           12444677889998874 45555

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.59  E-value=2.7  Score=41.62  Aligned_cols=232  Identities=16%  Similarity=0.109  Sum_probs=119.7

Q ss_pred             ccEEEEEEccCCCEEEEE-eCC----CeEEEEECCCCcEEEEe-CCCCceEEEEecCCCEEEEEeCCC-----------c
Q 009993          143 EAVLTVFVLASAKLLFTS-GYD----SIVRMWHLEDGFSIASS-KPLGCTIRAVAADKKLLVAGGTDG-----------F  205 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~sg-s~d----g~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~l~sg~~dg-----------~  205 (520)
                      -.+....++|+|+++|-+ +..    ..++++|+++|+.+... ......-..+.++++.|+....+.           .
T Consensus       124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            344467899999988854 333    35999999999776532 222222267778877766555433           2


Q ss_pred             EEEEEcccCcceeeeccCCccccceEEeccCCCC--eEEEEE--cCCEEEEEecC----CeEEEEECCCC-----cEEEE
Q 009993          206 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGP--ITSLAL--DLTRIYSGSWD----MTVRVWDRALL-----KCLKV  272 (520)
Q Consensus       206 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~--~~~~l~s~s~d----g~v~iwd~~~~-----~~~~~  272 (520)
                      |..|++.+...           .....+......  ...+..  ++++++..+..    ..+.+.|...+     .....
T Consensus       204 v~~~~~gt~~~-----------~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l  272 (414)
T PF02897_consen  204 VYRHKLGTPQS-----------EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL  272 (414)
T ss_dssp             EEEEETTS-GG-----------G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE
T ss_pred             EEEEECCCChH-----------hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE
Confidence            66777655421           112233333333  344555  77776644332    35788888764     33333


Q ss_pred             eeeccCE-EEEeeCCC-EEEEEc----CCeEEEEECCCCee---eEEeeccccc--ceEEEEecCCCCEEE-EEeCCC--
Q 009993          273 LRHSDWV-YGLAPHDT-TVASTS----GSDVYIWDTNSGCL---LTVVNGAHVG--NTKSLARSHTGDFLF-TGGEDG--  338 (520)
Q Consensus       273 ~~~~~~v-~~~~~~~~-~l~~~~----d~~i~iwd~~~~~~---~~~~~~~~~~--~i~~l~~s~~~~~l~-tg~~dg--  338 (520)
                      ......+ ..+...+. +++.+.    .+.|.-.++.....   ...+. .+..  .+..+..  .+++|+ ....++  
T Consensus       273 ~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~-~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~  349 (414)
T PF02897_consen  273 SPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI-PEDEDVSLEDVSL--FKDYLVLSYRENGSS  349 (414)
T ss_dssp             EESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEE--ETTEEEEEEEETTEE
T ss_pred             eCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc-CCCCceeEEEEEE--ECCEEEEEEEECCcc
Confidence            3333333 44443344 444443    25677788877652   22333 3444  3444444  344444 444554  


Q ss_pred             eEEEEEcc-cCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeC---CCcEEEEeCCcc
Q 009993          339 AIHMYEII-NDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAG---DGKLSLIDVRKL  394 (520)
Q Consensus       339 ~i~iwd~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~---dg~i~vwd~~~~  394 (520)
                      .|+++++. +.      ........-.+.|..+..++   .+.++.+.   -+++..||+.++
T Consensus       350 ~l~v~~~~~~~------~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~  406 (414)
T PF02897_consen  350 RLRVYDLDDGK------ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG  406 (414)
T ss_dssp             EEEEEETT-TE------EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred             EEEEEECCCCc------EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence            48888888 33      12222222234455555432   23333332   356777777764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PHA02790 Kelch-like protein; Provisional

Probab=95.58  E-value=0.55  Score=47.40  Aligned_cols=143  Identities=7%  Similarity=-0.039  Sum_probs=73.7

Q ss_pred             EEEcCCEEEEEecC--CeEEEEECCCCcEEEEee--ecc-CEEEEeeCCCEEEEEc-C---CeEEEEECCCCeeeEEeec
Q 009993          243 LALDLTRIYSGSWD--MTVRVWDRALLKCLKVLR--HSD-WVYGLAPHDTTVASTS-G---SDVYIWDTNSGCLLTVVNG  313 (520)
Q Consensus       243 l~~~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~--~~~-~v~~~~~~~~~l~~~~-d---~~i~iwd~~~~~~~~~~~~  313 (520)
                      +..++...+.|+.+  .++..||..+.+-...-.  ... .......++++.+.|+ +   ..+..||+++.+-...-..
T Consensus       315 v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m  394 (480)
T PHA02790        315 VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST  394 (480)
T ss_pred             EEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence            34477777777754  357888876553322222  111 1122336777777766 4   3477899877643221110


Q ss_pred             ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCC-----CcEEE
Q 009993          314 AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGD-----GKLSL  388 (520)
Q Consensus       314 ~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~v  388 (520)
                      .....-.+++ .-++.+.+.|+   .+.+||..++.    +..+..+.........+..++...+.||.+     ..|..
T Consensus       395 ~~~r~~~~~~-~~~~~IYv~GG---~~e~ydp~~~~----W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~  466 (480)
T PHA02790        395 YYPHYKSCAL-VFGRRLFLVGR---NAEFYCESSNT----WTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEV  466 (480)
T ss_pred             CCccccceEE-EECCEEEEECC---ceEEecCCCCc----EeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEE
Confidence            1111111222 23566666663   56788886652    122222322233344455677777777754     34667


Q ss_pred             EeCCc
Q 009993          389 IDVRK  393 (520)
Q Consensus       389 wd~~~  393 (520)
                      ||..+
T Consensus       467 Yd~~~  471 (480)
T PHA02790        467 YNNRT  471 (480)
T ss_pred             EECCC
Confidence            77665

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.46  E-value=2.6  Score=40.63  Aligned_cols=184  Identities=11%  Similarity=0.050  Sum_probs=91.5

Q ss_pred             ccCCCEEEEE---------eCCCeEEEEECCCCcEEEEeCC-CCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeee
Q 009993          151 LASAKLLFTS---------GYDSIVRMWHLEDGFSIASSKP-LGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD  220 (520)
Q Consensus       151 ~~~~~~l~sg---------s~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  220 (520)
                      |||+++++..         +..+.+.|+|+++++....... ....-..++|+|+.++... ++.|.+++..++......
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT   79 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLT   79 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEec
Confidence            5778777764         2356789999999765544332 3445567889999998876 578999987666332222


Q ss_pred             ccCCccccceEEeccC---------CCCeEEEEE--cCCEEEEEecC-CeEEEEEC---CCCcEEEEeeeccCEEEEe-e
Q 009993          221 ISGSEKQNTQFRLWEH---------EGPITSLAL--DLTRIYSGSWD-MTVRVWDR---ALLKCLKVLRHSDWVYGLA-P  284 (520)
Q Consensus       221 ~~~~~~~~~~~~~~~h---------~~~v~~l~~--~~~~l~s~s~d-g~v~iwd~---~~~~~~~~~~~~~~v~~~~-~  284 (520)
                      ..+..   .+  +.|-         -+.-..+-|  |+++|+....| ..|+.+.+   .....     .-..+..+. |
T Consensus        80 ~dg~~---~i--~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-----~yp~~~~~~YP  149 (353)
T PF00930_consen   80 TDGEP---GI--YNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-----QYPEVESIRYP  149 (353)
T ss_dssp             S--TT---TE--EESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-----SS-EEEEEE--
T ss_pred             cccce---eE--EcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc-----cCCcccccccC
Confidence            22200   00  0000         111234555  66666655443 33333322   11110     000122222 1


Q ss_pred             C-CCEEEEEcCCeEEEEECCCCeeeEE-ee---cccccceEEEEecCCCCEEEE--EeCCC---eEEEEEcccC
Q 009993          285 H-DTTVASTSGSDVYIWDTNSGCLLTV-VN---GAHVGNTKSLARSHTGDFLFT--GGEDG---AIHMYEIIND  348 (520)
Q Consensus       285 ~-~~~l~~~~d~~i~iwd~~~~~~~~~-~~---~~~~~~i~~l~~s~~~~~l~t--g~~dg---~i~iwd~~~~  348 (520)
                      . |..-   ..-.+.++|+.+++.... ..   ......+..+.|.+++..|+.  ...+.   .+.++|..++
T Consensus       150 k~G~~n---p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg  220 (353)
T PF00930_consen  150 KAGDPN---PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTG  220 (353)
T ss_dssp             BTTS------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTT
T ss_pred             CCCCcC---CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCC
Confidence            0 0000   012477889988865322 11   123556889999999984443  33332   3666777665

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=95.25  E-value=0.87  Score=44.83  Aligned_cols=179  Identities=13%  Similarity=0.025  Sum_probs=98.5

Q ss_pred             cccEEEEEEccCCCEEEEEe---CC-CeEEEEECCCCcEEEEe--CCCCceEEEEecCCCEEEE-EeCCCcEEEE--Ecc
Q 009993          142 TEAVLTVFVLASAKLLFTSG---YD-SIVRMWHLEDGFSIASS--KPLGCTIRAVAADKKLLVA-GGTDGFIHCW--RAV  212 (520)
Q Consensus       142 ~~~V~~l~~~~~~~~l~sgs---~d-g~v~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~l~s-g~~dg~i~vw--d~~  212 (520)
                      ...+..-+|+|++..++-.+   .. ..+.++++.+++.....  .++ ...-.++|+|++|+. ...||...+|  |+.
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~-~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~  270 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN-NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD  270 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCc-cCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence            34555567888887655442   22 45889999887654433  333 334578899987765 4556665544  554


Q ss_pred             cCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEe-cCC--eEEEEECCCCcEEEEee--eccCEEEEeeCCC
Q 009993          213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS-WDM--TVRVWDRALLKCLKVLR--HSDWVYGLAPHDT  287 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s-~dg--~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~  287 (520)
                      ++.           ........+... -.++.-+|++++-.+ ..|  .|.+.|.+.........  .....-.++|+|+
T Consensus       271 ~~~-----------~~~Lt~~~gi~~-~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~  338 (425)
T COG0823         271 GKN-----------LPRLTNGFGINT-SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGD  338 (425)
T ss_pred             CCc-----------ceecccCCcccc-CccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCC
Confidence            432           001111111111 122233787766554 344  46666776665433222  2222445569999


Q ss_pred             EEEEEc--CCe--EEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEe
Q 009993          288 TVASTS--GSD--VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG  335 (520)
Q Consensus       288 ~l~~~~--d~~--i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~  335 (520)
                      +++..+  +|.  |.+.|+.++...+.+.  +......-.+.|++..+...+
T Consensus       339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt--~~~~~e~ps~~~ng~~i~~~s  388 (425)
T COG0823         339 KIVFESSSGGQWDIDKNDLASGGKIRILT--STYLNESPSWAPNGRMIMFSS  388 (425)
T ss_pred             EEEEEeccCCceeeEEeccCCCCcEEEcc--ccccCCCCCcCCCCceEEEec
Confidence            998877  455  7777776665444432  333444556777777665443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.06  E-value=3.4  Score=39.54  Aligned_cols=187  Identities=13%  Similarity=0.089  Sum_probs=84.9

Q ss_pred             EEccCCCEEEEEe-CCC--eEEEEECCCCcEEEEeCCC--CceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccC
Q 009993          149 FVLASAKLLFTSG-YDS--IVRMWHLEDGFSIASSKPL--GCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISG  223 (520)
Q Consensus       149 ~~~~~~~~l~sgs-~dg--~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~  223 (520)
                      +|.++|+.|+-++ .||  .+.+-|+.+++..+-..+.  ...-..++++++.++-...+..|.-.|+.+.+..      
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~------  115 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEER------  115 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EE------
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEE------
Confidence            4677886555544 455  4666688888766544332  1112456677787766555667888888776431      


Q ss_pred             CccccceEEeccCCCCeEEEEE----cCCEEEE----------------------EecCCeEEEEECCCCcEEEEeeecc
Q 009993          224 SEKQNTQFRLWEHEGPITSLAL----DLTRIYS----------------------GSWDMTVRVWDRALLKCLKVLRHSD  277 (520)
Q Consensus       224 ~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s----------------------~s~dg~v~iwd~~~~~~~~~~~~~~  277 (520)
                           .+..+  ....+-...|    ++..++-                      +--...|.-.|+.+|+....+....
T Consensus       116 -----~vy~~--p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~  188 (386)
T PF14583_consen  116 -----VVYEV--PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD  188 (386)
T ss_dssp             -----EEEE----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS
T ss_pred             -----EEEEC--CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc
Confidence                 11111  1222211222    2222211                      1112456667888888777777777


Q ss_pred             CEEEEe---eCCCEEEEEcCC-----eEEEEECCC-CeeeEEeec-ccccceEEEEecCCCCEEEEE-----eCCCeEEE
Q 009993          278 WVYGLA---PHDTTVASTSGS-----DVYIWDTNS-GCLLTVVNG-AHVGNTKSLARSHTGDFLFTG-----GEDGAIHM  342 (520)
Q Consensus       278 ~v~~~~---~~~~~l~~~~d~-----~i~iwd~~~-~~~~~~~~~-~~~~~i~~l~~s~~~~~l~tg-----~~dg~i~i  342 (520)
                      ++.-+.   .++.+|+-|..|     .-+||-+++ +...+.+.. .....+..=-|.|||..|.--     +.+..|.-
T Consensus       189 wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~  268 (386)
T PF14583_consen  189 WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAG  268 (386)
T ss_dssp             -EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEE
T ss_pred             cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEe
Confidence            777665   455666666533     136665543 233333321 112233334588999866532     22445666


Q ss_pred             EEcccC
Q 009993          343 YEIIND  348 (520)
Q Consensus       343 wd~~~~  348 (520)
                      +|+.++
T Consensus       269 ~d~~t~  274 (386)
T PF14583_consen  269 YDPDTG  274 (386)
T ss_dssp             E-TTT-
T ss_pred             eCCCCC
Confidence            777766

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=94.91  E-value=2.8  Score=37.97  Aligned_cols=190  Identities=9%  Similarity=0.049  Sum_probs=118.5

Q ss_pred             EEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCc
Q 009993          189 AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLK  268 (520)
Q Consensus       189 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~  268 (520)
                      .+...+++.+.+..+.-+++.|+.+...          .... .+....+--.++...|++.+.+..|.-+.+.|+.+.+
T Consensus        91 Dv~vse~yvyvad~ssGL~IvDIS~P~s----------P~~~-~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdps  159 (370)
T COG5276          91 DVRVSEEYVYVADWSSGLRIVDISTPDS----------PTLI-GFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPS  159 (370)
T ss_pred             eeEecccEEEEEcCCCceEEEeccCCCC----------ccee-ccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCC
Confidence            3445678888888888899999977632          1111 1222235556677799999999977667788887654


Q ss_pred             EEEE---eee-ccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeeccc-ccceEEEEecCCCCEEEEEeCCCeEEE
Q 009993          269 CLKV---LRH-SDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAH-VGNTKSLARSHTGDFLFTGGEDGAIHM  342 (520)
Q Consensus       269 ~~~~---~~~-~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~tg~~dg~i~i  342 (520)
                      ....   ... ......+.-.|++-..+. |+.+.+.|+........+.... ...+.++..+++..+++...  --+.+
T Consensus       160 sP~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvli  237 (370)
T COG5276         160 SPQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLI  237 (370)
T ss_pred             CceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEE
Confidence            3322   222 222345666777777776 9999999998765444332212 33678888887766666543  33667


Q ss_pred             EEcccCccccceeeeeeecC-CcCCEEEEEecCCEEEEEeCCCcEEEEeCCcc
Q 009993          343 YEIINDCTEANVLLVATWIP-HTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       343 wd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~  394 (520)
                      -|..+...+   ........ ....++.+..++++...+..+.-+-+-|+.++
T Consensus       238 vd~s~~ssp---~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp  287 (370)
T COG5276         238 VDVSGPSSP---TVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNP  287 (370)
T ss_pred             EecCCCCCc---eEeeccccCCcccccceecccceeeeeccccCceeEeccCC
Confidence            777666321   11111111 11233445667788888888888888888764

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.91  E-value=0.37  Score=46.91  Aligned_cols=135  Identities=13%  Similarity=0.105  Sum_probs=82.7

Q ss_pred             EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---------cCCEEEEEecCCeEEEEECCC
Q 009993          196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---------DLTRIYSGSWDMTVRVWDRAL  266 (520)
Q Consensus       196 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---------~~~~l~s~s~dg~v~iwd~~~  266 (520)
                      ++.++.....++-.|++.|.             .+....-|.. |+-+.+         ++..-+.|-.|..|.-||.+-
T Consensus       348 il~~~~~~~~l~klDIE~GK-------------IVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv  413 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGK-------------IVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRV  413 (644)
T ss_pred             EeeCCCCcCcceeeecccce-------------eeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccc
Confidence            34455555667777877763             2222222333 443443         122345566778899999873


Q ss_pred             CcE--EEEee-----eccCEEEEe-eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCC
Q 009993          267 LKC--LKVLR-----HSDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED  337 (520)
Q Consensus       267 ~~~--~~~~~-----~~~~v~~~~-~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d  337 (520)
                      ...  +...+     ......|+. ....++++|+ +|.|++||. .+..-++...+-..+|..+..+.+|++|+..+ +
T Consensus       414 ~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~  491 (644)
T KOG2395|consen  414 QGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-K  491 (644)
T ss_pred             cCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-c
Confidence            221  11111     333445555 4556777777 999999998 55554444457888999999999999887654 4


Q ss_pred             CeEEEEEcc
Q 009993          338 GAIHMYEII  346 (520)
Q Consensus       338 g~i~iwd~~  346 (520)
                      ..+.+.++.
T Consensus       492 tyLlLi~t~  500 (644)
T KOG2395|consen  492 TYLLLIDTL  500 (644)
T ss_pred             cEEEEEEEe
Confidence            556666653

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.63  E-value=2.1  Score=43.99  Aligned_cols=108  Identities=19%  Similarity=0.207  Sum_probs=68.4

Q ss_pred             eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEec--CCCCEEEEEeCCCeEEEEEcc-----cCcccccee
Q 009993          284 PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARS--HTGDFLFTGGEDGAIHMYEII-----NDCTEANVL  355 (520)
Q Consensus       284 ~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s--~~~~~l~tg~~dg~i~iwd~~-----~~~~~~~~~  355 (520)
                      ..++..++.+ ...+.|||.+.+.....-.-...+.|..+.|.  |+++.+++.+..+.|.+|.-.     +..+.....
T Consensus        39 s~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i  118 (631)
T PF12234_consen   39 SIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPI  118 (631)
T ss_pred             ccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccccee
Confidence            3444444444 57799999999875544432357889999885  688888888899999988532     221111111


Q ss_pred             eeeeecCCc-CCEEEEEecC-CEEEEEeCCCcEEEEeCC
Q 009993          356 LVATWIPHT-GPVNSLAFEF-PWLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       356 ~~~~~~~h~-~~v~~l~~~~-~~l~s~s~dg~i~vwd~~  392 (520)
                      ....+..|+ .+|.+..|-+ ..|++|+ ++.+.|+|-.
T Consensus       119 ~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~  156 (631)
T PF12234_consen  119 RKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDKW  156 (631)
T ss_pred             EEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECCC
Confidence            112233444 5788999955 4566555 4568888754

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PRK13616 lipoprotein LpqB; Provisional

Probab=94.45  E-value=4.5  Score=41.83  Aligned_cols=74  Identities=16%  Similarity=0.020  Sum_probs=44.1

Q ss_pred             ccceEEEEecCCCCEEEEEeCCCeEEEEEc---ccCccccceeeeeeecC-CcCCEEEEEecC-CEEEEEeCCCcEEEEe
Q 009993          316 VGNTKSLARSHTGDFLFTGGEDGAIHMYEI---INDCTEANVLLVATWIP-HTGPVNSLAFEF-PWLVSAAGDGKLSLID  390 (520)
Q Consensus       316 ~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~---~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~-~~l~s~s~dg~i~vwd  390 (520)
                      .+.|..+.|||||..++... +|.|++--+   ..+.  ..+.....+.. -...+.++.|.+ ..|+.+..++...+|.
T Consensus       447 ~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~  523 (591)
T PRK13616        447 PGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWY  523 (591)
T ss_pred             CCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccEEeecccCCccccceEecCCEEEEEecCCCCceEE
Confidence            45799999999999888765 577777332   2331  11111122222 233468899944 4566776666566666


Q ss_pred             CC
Q 009993          391 VR  392 (520)
Q Consensus       391 ~~  392 (520)
                      +.
T Consensus       524 v~  525 (591)
T PRK13616        524 VN  525 (591)
T ss_pred             Ee
Confidence            54

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.32  E-value=3.9  Score=36.94  Aligned_cols=221  Identities=12%  Similarity=0.077  Sum_probs=119.0

Q ss_pred             EEEEccCC-CEEEEEeCCCe-EEEEECCCCcEEEEe--------CCCCceEEEEecCCCEEEEEeCC-----CcEEEEEc
Q 009993          147 TVFVLASA-KLLFTSGYDSI-VRMWHLEDGFSIASS--------KPLGCTIRAVAADKKLLVAGGTD-----GFIHCWRA  211 (520)
Q Consensus       147 ~l~~~~~~-~~l~sgs~dg~-v~vwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~l~sg~~d-----g~i~vwd~  211 (520)
                      .++|+|.. .-++.+-.-|+ ..++|....+...++        .+|.    .++++|.+|+..-.|     |.|-|||.
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG----vfs~dG~~LYATEndfd~~rGViGvYd~  147 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG----VFSPDGRLLYATENDFDPNRGVIGVYDA  147 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc----ccCCCCcEEEeecCCCCCCCceEEEEec
Confidence            56677753 34555555554 568888877655444        3343    578999999876544     77899998


Q ss_pred             ccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec------------------CCeEEEEECCCCcEEE
Q 009993          212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW------------------DMTVRVWDRALLKCLK  271 (520)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~------------------dg~v~iwd~~~~~~~~  271 (520)
                      ..+.            ..+-.+..|.-.-..+.+  ||..++.+..                  .-++.+.|..+++.+.
T Consensus       148 r~~f------------qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie  215 (366)
T COG3490         148 REGF------------QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE  215 (366)
T ss_pred             cccc------------ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh
Confidence            7552            234445566655566666  7777665542                  1123334444554443


Q ss_pred             Eee-----eccCEEEEe--eCCCEEEEEc-CCe-----EEEEECCCCeeeEEeec------ccccceEEEEecCCCCEEE
Q 009993          272 VLR-----HSDWVYGLA--PHDTTVASTS-GSD-----VYIWDTNSGCLLTVVNG------AHVGNTKSLARSHTGDFLF  332 (520)
Q Consensus       272 ~~~-----~~~~v~~~~--~~~~~l~~~~-d~~-----i~iwd~~~~~~~~~~~~------~~~~~i~~l~~s~~~~~l~  332 (520)
                      ...     +...|..+.  .++..++.+. .|.     ..+=-...++.+..+..      .....|-+++.+.+..+++
T Consensus       216 kh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~  295 (366)
T COG3490         216 KHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVA  295 (366)
T ss_pred             hccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEE
Confidence            332     223344444  4555544443 221     11111122333332221      1233566777776666655


Q ss_pred             EEe-CCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeC
Q 009993          333 TGG-EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDV  391 (520)
Q Consensus       333 tg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~  391 (520)
                      ..+ ..+...+||..++.      .+..  ..-.....+.....-++..+.+|.+.++.-
T Consensus       296 lTSP~GN~~vi~da~tG~------vv~~--a~l~daaGva~~~~gf~vssg~G~~~~~s~  347 (366)
T COG3490         296 LTSPRGNRAVIWDAATGA------VVSE--AALPDAAGVAAAKGGFAVSSGQGRIIFYSR  347 (366)
T ss_pred             EecCCCCeEEEEEcCCCc------EEec--ccccccccceeccCceEEecCCceEEeccc
Confidence            444 44567889999983      2221  111123344445566777778888888743

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.21  E-value=3.4  Score=35.86  Aligned_cols=154  Identities=20%  Similarity=0.192  Sum_probs=82.4

Q ss_pred             CCEEEEEcCCeEEEEECC--CCeeeEEeecccccceEEEEecCCCCEEEEEeCC---C---eEEEE-EcccCccccceee
Q 009993          286 DTTVASTSGSDVYIWDTN--SGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED---G---AIHMY-EIINDCTEANVLL  356 (520)
Q Consensus       286 ~~~l~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d---g---~i~iw-d~~~~~~~~~~~~  356 (520)
                      +.+++++++..|.+|++.  ..+....+.  .-+.|..+.++..|++|+|-=++   .   .+|+| +.+.......+..
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~  106 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR  106 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence            445555668899999988  335566664  56889999999999999985332   2   45664 2222110000001


Q ss_pred             eeeecCC---------------------cCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecC
Q 009993          357 VATWIPH---------------------TGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVE  413 (520)
Q Consensus       357 ~~~~~~h---------------------~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  413 (520)
                       ..+.||                     ..++.+++.-|  .-|+.|+ ++++.+|.+.......      ....+..+.
T Consensus       107 -vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~------~~~~~lDFe  178 (215)
T PF14761_consen  107 -VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQS------EKFSFLDFE  178 (215)
T ss_pred             -EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEec------ccccEEech
Confidence             011121                     22344444432  2344444 4579999887643210      000111111


Q ss_pred             CCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCC
Q 009993          414 PPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       414 ~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~  451 (520)
                       .............-+++.+.++|..+. -.+++..+.
T Consensus       179 -~~l~~~~~~~~p~~v~ic~~yiA~~s~-~ev~Vlkl~  214 (215)
T PF14761_consen  179 -RSLIDHIDNFKPTQVAICEGYIAVMSD-LEVLVLKLE  214 (215)
T ss_pred             -hhhhheecCceEEEEEEEeeEEEEecC-CEEEEEEEe
Confidence             111122333446677777888888885 467777653

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.17  E-value=2.3  Score=33.74  Aligned_cols=102  Identities=9%  Similarity=0.085  Sum_probs=69.2

Q ss_pred             EEcC--CEEEEEecCCeEEEEECCC--------CcEEEEeeeccCEEEEe-------eCCCEEEEEcCCeEEEEECCCCe
Q 009993          244 ALDL--TRIYSGSWDMTVRVWDRAL--------LKCLKVLRHSDWVYGLA-------PHDTTVASTSGSDVYIWDTNSGC  306 (520)
Q Consensus       244 ~~~~--~~l~s~s~dg~v~iwd~~~--------~~~~~~~~~~~~v~~~~-------~~~~~l~~~~d~~i~iwd~~~~~  306 (520)
                      .|||  ..|+.++.-|.|.|++...        ...+..+.....|+++.       .....|+.|+...+..||+....
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~   84 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNS   84 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCc
Confidence            4444  3477888889999998663        34566677788888886       24678999999999999998877


Q ss_pred             eeEEeecccccceEEEEecC----CCCEEEEEeCCCeEEEEEcccC
Q 009993          307 LLTVVNGAHVGNTKSLARSH----TGDFLFTGGEDGAIHMYEIIND  348 (520)
Q Consensus       307 ~~~~~~~~~~~~i~~l~~s~----~~~~l~tg~~dg~i~iwd~~~~  348 (520)
                      .+....  -...++++.+-.    ...++++| .+..|.-||....
T Consensus        85 d~Fyke--~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~  127 (136)
T PF14781_consen   85 DLFYKE--VPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGN  127 (136)
T ss_pred             hhhhhh--CccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCc
Confidence            664433  345677776632    23344444 4566777776554

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.02  E-value=6.6  Score=38.46  Aligned_cols=138  Identities=15%  Similarity=0.182  Sum_probs=87.2

Q ss_pred             CEEEEEecCCeEEEEECCCCc-----EEEEeeeccCEEEEe-------eCCCEEEEEcCCeEEEEECCC--Ce-------
Q 009993          248 TRIYSGSWDMTVRVWDRALLK-----CLKVLRHSDWVYGLA-------PHDTTVASTSGSDVYIWDTNS--GC-------  306 (520)
Q Consensus       248 ~~l~s~s~dg~v~iwd~~~~~-----~~~~~~~~~~v~~~~-------~~~~~l~~~~d~~i~iwd~~~--~~-------  306 (520)
                      +.+++||..|.++||+.....     .+-..+...+|..+.       .....|++-.-..+.+|.+..  |.       
T Consensus        38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~  117 (418)
T PF14727_consen   38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQY  117 (418)
T ss_pred             cEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEE
Confidence            679999999999999986443     334444778888877       234567776688888888732  11       


Q ss_pred             eeEEeecccc--cceEEEEecC----C-CCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEE
Q 009993          307 LLTVVNGAHV--GNTKSLARSH----T-GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWL  377 (520)
Q Consensus       307 ~~~~~~~~~~--~~i~~l~~s~----~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l  377 (520)
                      .+..+. .|.  .....++.-|    . ..++.+-+.||.+.+|+-+..      .....+.+ .--...+.|.+  +.+
T Consensus       118 ~L~~~y-eh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~------~f~~~lp~-~llPgPl~Y~~~tDsf  189 (418)
T PF14727_consen  118 QLELIY-EHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF------AFSRFLPD-FLLPGPLCYCPRTDSF  189 (418)
T ss_pred             EEEEEE-EEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE------EEEEEcCC-CCCCcCeEEeecCCEE
Confidence            112221 232  2334444433    2 367888999999999997665      22222222 22233455644  688


Q ss_pred             EEEeCCCcEEEEeCCc
Q 009993          378 VSAAGDGKLSLIDVRK  393 (520)
Q Consensus       378 ~s~s~dg~i~vwd~~~  393 (520)
                      ++++.+..+.-|....
T Consensus       190 vt~sss~~l~~Yky~~  205 (418)
T PF14727_consen  190 VTASSSWTLECYKYQD  205 (418)
T ss_pred             EEecCceeEEEecHHH
Confidence            8888888888887653

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.84  E-value=9.2  Score=39.50  Aligned_cols=33  Identities=21%  Similarity=0.137  Sum_probs=28.4

Q ss_pred             ccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993          316 VGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  348 (520)
Q Consensus       316 ~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~  348 (520)
                      .+.+..+..||+.++|+--..+|.|.+-+.+..
T Consensus       216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~  248 (829)
T KOG2280|consen  216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLS  248 (829)
T ss_pred             CceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence            356778999999999999999999999887766

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.25  E-value=0.7  Score=40.94  Aligned_cols=35  Identities=14%  Similarity=0.149  Sum_probs=29.3

Q ss_pred             CCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEE
Q 009993          238 GPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKV  272 (520)
Q Consensus       238 ~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~  272 (520)
                      .++..+..+++++++.+.+|.+++||+.+++.+..
T Consensus        13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~   47 (219)
T PF07569_consen   13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLP   47 (219)
T ss_pred             CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccC
Confidence            45666777999999999999999999998876544

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=93.24  E-value=1.9  Score=42.45  Aligned_cols=90  Identities=19%  Similarity=0.245  Sum_probs=59.4

Q ss_pred             CeEEEEECCCCcEEEEee--eccCEEEEeeCCCEEEEEc--CC--eEEEEECCCCeeeEEeecccccceEEEEecCCCCE
Q 009993          257 MTVRVWDRALLKCLKVLR--HSDWVYGLAPHDTTVASTS--GS--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDF  330 (520)
Q Consensus       257 g~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~--d~--~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~  330 (520)
                      ..+.++|+.+++......  .....-.++|+|+.++.+.  ||  .|++.|+..+...+ +.. ..+.-..-.|+|||+.
T Consensus       218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~-~~gi~~~Ps~spdG~~  295 (425)
T COG0823         218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTN-GFGINTSPSWSPDGSK  295 (425)
T ss_pred             ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-ccc-CCccccCccCCCCCCE
Confidence            468999999887666655  4445556779999888777  44  48888988887444 432 2222336679999998


Q ss_pred             EEEE-eCCCe--EEEEEcccC
Q 009993          331 LFTG-GEDGA--IHMYEIIND  348 (520)
Q Consensus       331 l~tg-~~dg~--i~iwd~~~~  348 (520)
                      ++-. +..|.  |.+++....
T Consensus       296 ivf~Sdr~G~p~I~~~~~~g~  316 (425)
T COG0823         296 IVFTSDRGGRPQIYLYDLEGS  316 (425)
T ss_pred             EEEEeCCCCCcceEEECCCCC
Confidence            7754 44555  445555544

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=93.01  E-value=9.8  Score=37.32  Aligned_cols=144  Identities=13%  Similarity=0.095  Sum_probs=79.7

Q ss_pred             CCEEEEEeCCCeEEEEECCCCcE----EEEeCCCCceEEEEe-------cCCCEEEEEeCCCcEEEEEcccCcceeeecc
Q 009993          154 AKLLFTSGYDSIVRMWHLEDGFS----IASSKPLGCTIRAVA-------ADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS  222 (520)
Q Consensus       154 ~~~l~sgs~dg~v~vwd~~~~~~----~~~~~~~~~~v~~~~-------~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  222 (520)
                      ...+++||.+|.++||+...+..    +.--..-..+|..+.       .+...||+ -.-..+.+|.+.......    
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~----  111 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTV----  111 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCc----
Confidence            46899999999999999854431    111112345666664       12233443 445677777763221100    


Q ss_pred             CCccccceEEeccCCCC--eEEEEE------c-CCEEEEEecCCeEEEEECCCCcEEEEee---eccCEEEEeeCCCEEE
Q 009993          223 GSEKQNTQFRLWEHEGP--ITSLAL------D-LTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLAPHDTTVA  290 (520)
Q Consensus       223 ~~~~~~~~~~~~~h~~~--v~~l~~------~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~l~  290 (520)
                      .............|.-.  ...++.      . .+.+..-+.||.+.+++-+.......+.   .++++.-+...+.++.
T Consensus       112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt  191 (418)
T PF14727_consen  112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVT  191 (418)
T ss_pred             ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEE
Confidence            00001122223334322  222332      2 3678999999999999987665544444   5666655555555555


Q ss_pred             EEcCCeEEEEEC
Q 009993          291 STSGSDVYIWDT  302 (520)
Q Consensus       291 ~~~d~~i~iwd~  302 (520)
                      +.++..+..|..
T Consensus       192 ~sss~~l~~Yky  203 (418)
T PF14727_consen  192 ASSSWTLECYKY  203 (418)
T ss_pred             ecCceeEEEecH
Confidence            555777777754

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=92.95  E-value=9.9  Score=37.21  Aligned_cols=72  Identities=14%  Similarity=0.206  Sum_probs=48.0

Q ss_pred             cceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCC----EEEEEe-------------cC---C-
Q 009993          317 GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP----VNSLAF-------------EF---P-  375 (520)
Q Consensus       317 ~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~----v~~l~~-------------~~---~-  375 (520)
                      ..+.+++.+|++.+.++...=|.|.++|+..+      ..++.++|-.+.    +....-             .+   . 
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~------~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~  381 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARG------IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF  381 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCC------hhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence            35788999999998888877799999999888      445445443321    000000             00   1 


Q ss_pred             EEEEEeCCCcEEEEeCCcc
Q 009993          376 WLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       376 ~l~s~s~dg~i~vwd~~~~  394 (520)
                      +++-+-.-|.|.||.++++
T Consensus       382 LvIyaprRg~lEvW~~~~g  400 (415)
T PF14655_consen  382 LVIYAPRRGILEVWSMRQG  400 (415)
T ss_pred             EEEEeccCCeEEEEecCCC
Confidence            3445566899999999875

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=92.57  E-value=11  Score=36.76  Aligned_cols=15  Identities=33%  Similarity=0.505  Sum_probs=10.9

Q ss_pred             EEEecCCEEEEecCC
Q 009993          428 SVDIGADRIVCGGEE  442 (520)
Q Consensus       428 ~~~~~~~~l~sg~~D  442 (520)
                      ++..++.+++.||..
T Consensus       339 av~~~~~iyv~GG~~  353 (376)
T PRK14131        339 SVSWNNGVLLIGGET  353 (376)
T ss_pred             EEEeCCEEEEEcCCC
Confidence            566777788888864

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.36  E-value=17  Score=38.54  Aligned_cols=35  Identities=14%  Similarity=0.154  Sum_probs=27.7

Q ss_pred             cccceEEEEecCC---CCEEEEEeCCCeEEEEEcccCc
Q 009993          315 HVGNTKSLARSHT---GDFLFTGGEDGAIHMYEIINDC  349 (520)
Q Consensus       315 ~~~~i~~l~~s~~---~~~l~tg~~dg~i~iwd~~~~~  349 (520)
                      +...|..+.|+|.   +..|++=..|+++++||+....
T Consensus       145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence            4557888889885   4788888899999999997654

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.32  E-value=11  Score=36.31  Aligned_cols=212  Identities=15%  Similarity=0.066  Sum_probs=106.1

Q ss_pred             cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC-C------------------CCceEEEEecCCCEEEEEeC
Q 009993          142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-P------------------LGCTIRAVAADKKLLVAGGT  202 (520)
Q Consensus       142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~-~------------------~~~~v~~~~~~~~~l~sg~~  202 (520)
                      ...+....|+|+|+.++-.. ++.|.+++..++...+... +                  ......-++||+++|+....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            56778889999999998886 6789999988775443221 2                  11233457799998887655


Q ss_pred             C-CcEEEEEcccCcceeeeccCCccccceEEeccCC---CCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEe-e-
Q 009993          203 D-GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE---GPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL-R-  274 (520)
Q Consensus       203 d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~-  274 (520)
                      | ..|..+.+...                   ....   -.+..+.+  -|.-..    .-.+.++|+.+++....- . 
T Consensus       121 d~~~v~~~~~~~~-------------------~~~~~~yp~~~~~~YPk~G~~np----~v~l~v~~~~~~~~~~~~~~~  177 (353)
T PF00930_consen  121 DEREVPEYPLPDY-------------------SPPDSQYPEVESIRYPKAGDPNP----RVSLFVVDLASGKTTELDPPN  177 (353)
T ss_dssp             E-TTS-EEEEEEE-------------------SSSTESS-EEEEEE--BTTS-------EEEEEEEESSSTCCCEE---H
T ss_pred             CCcCCceEEeecc-------------------CCccccCCcccccccCCCCCcCC----ceEEEEEECCCCcEEEeeecc
Confidence            4 44544443211                   0111   12333333  111111    013667888777653211 1 


Q ss_pred             ----eccCEEEEe--eCCCEEEE-Ec--C---CeEEEEECCCCeeeEEeecccccce---EEEEec-CCCC-EEEEEeCC
Q 009993          275 ----HSDWVYGLA--PHDTTVAS-TS--G---SDVYIWDTNSGCLLTVVNGAHVGNT---KSLARS-HTGD-FLFTGGED  337 (520)
Q Consensus       275 ----~~~~v~~~~--~~~~~l~~-~~--d---~~i~iwd~~~~~~~~~~~~~~~~~i---~~l~~s-~~~~-~l~tg~~d  337 (520)
                          ....+..+.  +++..++. -.  +   ..+.++|..++...........+.|   ....+. +++. ++.....|
T Consensus       178 ~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~  257 (353)
T PF00930_consen  178 SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD  257 (353)
T ss_dssp             HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred             ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence                223344444  66763333 32  2   2377788887755433332222222   244554 5554 55556677


Q ss_pred             CeEEEEEcccCccccceeeeeeecCCcCCEEE-EEecC--C-EEEEEeC
Q 009993          338 GAIHMYEIINDCTEANVLLVATWIPHTGPVNS-LAFEF--P-WLVSAAG  382 (520)
Q Consensus       338 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~--~-~l~s~s~  382 (520)
                      |.-+||-+....     .....+....-.|+. +.+++  + ..+++..
T Consensus       258 G~~hly~~~~~~-----~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~  301 (353)
T PF00930_consen  258 GYRHLYLYDLDG-----GKPRQLTSGDWEVTSILGWDEDNNRIYFTANG  301 (353)
T ss_dssp             SSEEEEEEETTS-----SEEEESS-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred             CCcEEEEEcccc-----cceeccccCceeecccceEcCCCCEEEEEecC
Confidence            765555544432     123344445556655 44454  3 4455555

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.20  E-value=0.63  Score=28.59  Aligned_cols=31  Identities=16%  Similarity=0.018  Sum_probs=26.0

Q ss_pred             ccEEEEEEccCC---CEEEEEeCCCeEEEEECCC
Q 009993          143 EAVLTVFVLASA---KLLFTSGYDSIVRMWHLED  173 (520)
Q Consensus       143 ~~V~~l~~~~~~---~~l~sgs~dg~v~vwd~~~  173 (520)
                      ++|.++.|+|+.   .+|+.+-.-|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            578999999853   5888888889999999985

It contains a characteristic DLL sequence motif.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.12  E-value=12  Score=36.34  Aligned_cols=95  Identities=17%  Similarity=0.248  Sum_probs=51.1

Q ss_pred             cCCeEEEEECCCCcEEEEeeec---c---CEEEEe-eCCCEEEEEc--CCeEEEEEC-CCCe----eeEEeecc------
Q 009993          255 WDMTVRVWDRALLKCLKVLRHS---D---WVYGLA-PHDTTVASTS--GSDVYIWDT-NSGC----LLTVVNGA------  314 (520)
Q Consensus       255 ~dg~v~iwd~~~~~~~~~~~~~---~---~v~~~~-~~~~~l~~~~--d~~i~iwd~-~~~~----~~~~~~~~------  314 (520)
                      ...++.+||+.+.+.++++...   .   .|..+. |+..+-++++  .++|..|-. ..++    .+..+...      
T Consensus       220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~  299 (461)
T PF05694_consen  220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI  299 (461)
T ss_dssp             S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred             ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence            3468999999999999999732   1   222222 5555555544  666666544 4332    22222210      


Q ss_pred             ---c-------ccceEEEEecCCCCEEEEEe-CCCeEEEEEcccCc
Q 009993          315 ---H-------VGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDC  349 (520)
Q Consensus       315 ---~-------~~~i~~l~~s~~~~~l~tg~-~dg~i~iwd~~~~~  349 (520)
                         -       ..-|+.+..|.|.++|..++ .+|.|+.||+....
T Consensus       300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence               0       24578999999999887654 58999999998874

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.96  E-value=14  Score=38.69  Aligned_cols=109  Identities=9%  Similarity=0.045  Sum_probs=65.1

Q ss_pred             CCCEEEEEeCCCeEEEEEcccCc--------------cccceeeeeeecCCcCCEEEEEec--C--CEEEEEeCCCcEEE
Q 009993          327 TGDFLFTGGEDGAIHMYEIINDC--------------TEANVLLVATWIPHTGPVNSLAFE--F--PWLVSAAGDGKLSL  388 (520)
Q Consensus       327 ~~~~l~tg~~dg~i~iwd~~~~~--------------~~~~~~~~~~~~~h~~~v~~l~~~--~--~~l~s~s~dg~i~v  388 (520)
                      +...|+.+.+||.|.+|.+..-.              ....+++...+. -...++++++.  .  ++||+++....|.|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence            55688999999999999763210              001111222222 23478899986  3  57777777778888


Q ss_pred             EeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC---C---EEEEecCCCeEEEEeC
Q 009993          389 IDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA---D---RIVCGGEEGIVRIWNF  450 (520)
Q Consensus       389 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~---~l~sg~~Dg~v~iwd~  450 (520)
                      |-+........              ........|..+..++-.+.   .   .|++++-.|.+-+|++
T Consensus       192 Faf~l~~~r~~--------------~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  192 FAFALVDERFY--------------HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEeccccccc--------------cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            87654211100              00011145666655555433   2   7888999999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.95  E-value=0.66  Score=28.48  Aligned_cols=32  Identities=19%  Similarity=0.299  Sum_probs=26.1

Q ss_pred             cceEEEEecCCC---CEEEEEeCCCeEEEEEcccC
Q 009993          317 GNTKSLARSHTG---DFLFTGGEDGAIHMYEIIND  348 (520)
Q Consensus       317 ~~i~~l~~s~~~---~~l~tg~~dg~i~iwd~~~~  348 (520)
                      +.+.++.|+|..   ++|+.+-.-|.|.|+|+++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468899999854   48888777899999999964

It contains a characteristic DLL sequence motif.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.77  E-value=11  Score=39.39  Aligned_cols=108  Identities=15%  Similarity=0.146  Sum_probs=66.8

Q ss_pred             CeEEEEE----cCCEEEEEecCCeEEEEECCC-------C-------------cEEEEeeeccCEEEEee----CCCEEE
Q 009993          239 PITSLAL----DLTRIYSGSWDMTVRVWDRAL-------L-------------KCLKVLRHSDWVYGLAP----HDTTVA  290 (520)
Q Consensus       239 ~v~~l~~----~~~~l~s~s~dg~v~iwd~~~-------~-------------~~~~~~~~~~~v~~~~~----~~~~l~  290 (520)
                      .|+-|..    +...|+.+..||.|.+|.+++       .             ++...+..+..+++++.    ..+++|
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence            3455544    457799999999999997521       0             01122234556777773    366777


Q ss_pred             EEc-CCeEEEEECCC--CeeeEEeecccccceEEEEecCCC---C---EEEEEeCCCeEEEEEcc
Q 009993          291 STS-GSDVYIWDTNS--GCLLTVVNGAHVGNTKSLARSHTG---D---FLFTGGEDGAIHMYEII  346 (520)
Q Consensus       291 ~~~-d~~i~iwd~~~--~~~~~~~~~~~~~~i~~l~~s~~~---~---~l~tg~~dg~i~iwd~~  346 (520)
                      +++ ...|.||-...  .+....-...+...|.+++|-++.   .   .|++++-.|.+.+|++.
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            777 46666664433  221111111356678899987643   2   78888999999998883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=91.58  E-value=19  Score=37.35  Aligned_cols=161  Identities=11%  Similarity=0.123  Sum_probs=95.4

Q ss_pred             cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEE--EEeC-CCC------ceEEEEe--cCCCEEEEEeC-CC---cE
Q 009993          142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI--ASSK-PLG------CTIRAVA--ADKKLLVAGGT-DG---FI  206 (520)
Q Consensus       142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~--~~~~-~~~------~~v~~~~--~~~~~l~sg~~-dg---~i  206 (520)
                      .+.|-.+.|.++++.+++...+|.|.+||...+...  ..+. .+.      .-|..+.  ....++++-+. ++   ..
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence            678899999999999999999999999999333211  1111 111      1122222  12344444444 32   24


Q ss_pred             EEEEcccCcceeeeccCCccccceE--EeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeec-------c
Q 009993          207 HCWRAVEVLPHLFDISGSEKQNTQF--RLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHS-------D  277 (520)
Q Consensus       207 ~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-------~  277 (520)
                      +++.+.......         ....  ....+...=..+++..+.|+-- .+++|.+|++...+..+++.-+       .
T Consensus       209 kL~~l~~~~~~~---------~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~  278 (670)
T PF10395_consen  209 KLISLSNESSSI---------FELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESD  278 (670)
T ss_pred             EEEEeccCCcce---------EEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccc
Confidence            455551111111         1111  1112222223455544444433 6789999999988887777622       3


Q ss_pred             CEEEEe-eCCCEEEEEcCCeEEEEECCCCeeeEEee
Q 009993          278 WVYGLA-PHDTTVASTSGSDVYIWDTNSGCLLTVVN  312 (520)
Q Consensus       278 ~v~~~~-~~~~~l~~~~d~~i~iwd~~~~~~~~~~~  312 (520)
                      .+.++. +..+.++.+.++.|++.|+.-...+..+.
T Consensus       279 ~~vSl~~~s~nRvLLs~~nkIyLld~~~~siLse~~  314 (670)
T PF10395_consen  279 DLVSLKPPSPNRVLLSVNNKIYLLDLKFESILSEFE  314 (670)
T ss_pred             cceEeecCCCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence            566666 88899999999999999998766665554

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.56  E-value=11  Score=34.49  Aligned_cols=156  Identities=14%  Similarity=0.155  Sum_probs=96.9

Q ss_pred             cCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeecc--CEEEEe--eCCCEEEEEc-CCeEEEEECCCCee
Q 009993          235 EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSD--WVYGLA--PHDTTVASTS-GSDVYIWDTNSGCL  307 (520)
Q Consensus       235 ~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~  307 (520)
                      +-...|.++.|  +.+.|++......-.++=...|+.+.++....  ..-.+.  .++.++++-. +..+.++.+.....
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence            44556999999  44678888877777788777899998887221  122233  3344444444 67777776665422


Q ss_pred             eEE-----ee---ccc-ccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCC-------cCCEEEEE
Q 009993          308 LTV-----VN---GAH-VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH-------TGPVNSLA  371 (520)
Q Consensus       308 ~~~-----~~---~~~-~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h-------~~~v~~l~  371 (520)
                      +..     +.   ..+ +.....++|.|....|+.+-+-.-+.||.+......   ..+.....+       -..|.++.
T Consensus       163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~---l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS---LSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc---cccccccCcccccceEeeccccce
Confidence            211     11   112 556789999999999999988888888887754211   011111111       12466777


Q ss_pred             ecC---CEEEEEeCCCcEEEEeCCc
Q 009993          372 FEF---PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       372 ~~~---~~l~s~s~dg~i~vwd~~~  393 (520)
                      |++   ..|+-+..++.+.-.|...
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEecCC
Confidence            764   4666666777777777664

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.53  E-value=1.7  Score=38.51  Aligned_cols=75  Identities=15%  Similarity=0.109  Sum_probs=51.4

Q ss_pred             eeeccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEe------ec-------ccccceEEEEecCCCCEEEEEeCCC
Q 009993          273 LRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVV------NG-------AHVGNTKSLARSHTGDFLFTGGEDG  338 (520)
Q Consensus       273 ~~~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~------~~-------~~~~~i~~l~~s~~~~~l~tg~~dg  338 (520)
                      +.-+.++..+..++.++++-+ +|.+++||+.+++.+..-      ..       .....|..+.++.+|.-+++-+ +|
T Consensus         9 i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng   87 (219)
T PF07569_consen    9 IVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NG   87 (219)
T ss_pred             EecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CC
Confidence            345566777887787777766 999999999998765432      11       2445677777777777666553 56


Q ss_pred             eEEEEEcccC
Q 009993          339 AIHMYEIIND  348 (520)
Q Consensus       339 ~i~iwd~~~~  348 (520)
                      ..+.|+..-+
T Consensus        88 ~~y~y~~~L~   97 (219)
T PF07569_consen   88 DSYSYSPDLG   97 (219)
T ss_pred             CEEEeccccc
Confidence            7788876544

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.39  E-value=20  Score=38.00  Aligned_cols=32  Identities=16%  Similarity=0.080  Sum_probs=24.4

Q ss_pred             CCCCeEEEEE-----cCCEEEEEecCCeEEEEECCCC
Q 009993          236 HEGPITSLAL-----DLTRIYSGSWDMTVRVWDRALL  267 (520)
Q Consensus       236 h~~~v~~l~~-----~~~~l~s~s~dg~v~iwd~~~~  267 (520)
                      +...|..+.|     ++..|+.-..|+++++||+...
T Consensus       145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            3456677777     3467888899999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.95  E-value=8.2  Score=42.50  Aligned_cols=138  Identities=15%  Similarity=0.273  Sum_probs=82.6

Q ss_pred             EEecCCeEEEEECCCCcEEEEee-eccCEEEEe---eC--------CCEEEEEcCCeEEEEECC----CCeee-----EE
Q 009993          252 SGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA---PH--------DTTVASTSGSDVYIWDTN----SGCLL-----TV  310 (520)
Q Consensus       252 s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~---~~--------~~~l~~~~d~~i~iwd~~----~~~~~-----~~  310 (520)
                      -.+-|..+.+|+.+++.....+. ....|..+.   |.        ...|+.+.--.|.++-+.    ++..-     ..
T Consensus        94 WiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~  173 (1311)
T KOG1900|consen   94 WITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK  173 (1311)
T ss_pred             EEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee
Confidence            34568899999999876666655 444455443   32        234555555555555332    21110     11


Q ss_pred             eecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccc-----------------cc-eeeeeee-cCCcCCEEEEE
Q 009993          311 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE-----------------AN-VLLVATW-IPHTGPVNSLA  371 (520)
Q Consensus       311 ~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~-----------------~~-~~~~~~~-~~h~~~v~~l~  371 (520)
                      +. .....|+++....+|+.+++| .||  .+|.+.-....                 .. ...+..+ ..+..+|..+.
T Consensus       174 i~-~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~  249 (1311)
T KOG1900|consen  174 IS-VDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT  249 (1311)
T ss_pred             ee-cCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence            11 135578889888888877766 555  45554221100                 00 0011222 35678999999


Q ss_pred             ecC--CEEEEEeCCCcEEEEeCCc
Q 009993          372 FEF--PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       372 ~~~--~~l~s~s~dg~i~vwd~~~  393 (520)
                      .+.  +.+.+-+..|+|.+||+..
T Consensus       250 ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  250 IDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eccccceeeeeccCceEEEEEccC
Confidence            975  6889999999999999986

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=90.94  E-value=4.9  Score=41.38  Aligned_cols=100  Identities=15%  Similarity=0.224  Sum_probs=65.2

Q ss_pred             cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE----cCCEEEEEecCCeEEEEECC--
Q 009993          192 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRA--  265 (520)
Q Consensus       192 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~v~iwd~~--  265 (520)
                      .-++..++-+....+.|||...+..           .....+ ...+.|.++.|    ++..+++.+..+.|.++--.  
T Consensus        39 s~~k~a~V~~~~~~LtIWD~~~~~l-----------E~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~  106 (631)
T PF12234_consen   39 SIKKIAVVDSSRSELTIWDTRSGVL-----------EYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRY  106 (631)
T ss_pred             ccCcEEEEECCCCEEEEEEcCCcEE-----------EEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccch
Confidence            3344444444456789999877631           111122 56789999999    77889999999999998532  


Q ss_pred             -------CCcEEEEee----eccCEEEEe-eCCCEEEEEcCCeEEEEECC
Q 009993          266 -------LLKCLKVLR----HSDWVYGLA-PHDTTVASTSGSDVYIWDTN  303 (520)
Q Consensus       266 -------~~~~~~~~~----~~~~v~~~~-~~~~~l~~~~d~~i~iwd~~  303 (520)
                             +...++.+.    .+.+|.+.. -.+..+++|+++.+.|+|-.
T Consensus       107 dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk~  156 (631)
T PF12234_consen  107 DYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDKW  156 (631)
T ss_pred             hhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECCC
Confidence                   223344443    235666655 55667778888999998854

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=90.93  E-value=9.7  Score=32.84  Aligned_cols=177  Identities=14%  Similarity=0.075  Sum_probs=94.6

Q ss_pred             cCCCEEEEEeCC--CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEE-EecCCeEEEEECCCCc
Q 009993          192 ADKKLLVAGGTD--GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYS-GSWDMTVRVWDRALLK  268 (520)
Q Consensus       192 ~~~~~l~sg~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s-~s~dg~v~iwd~~~~~  268 (520)
                      .++.++.+.+.-  ..|++||+.++.........+      -.+.+  ..++   --++++.. .=.+|.-..+|.++.+
T Consensus        54 ~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~------~~~Fg--EGit---~~gd~~y~LTw~egvaf~~d~~t~~  122 (262)
T COG3823          54 LDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP------DTVFG--EGIT---KLGDYFYQLTWKEGVAFKYDADTLE  122 (262)
T ss_pred             eCCEEEEeccccccceeEEEeccCceEEEEeecCC------ccccc--ccee---eccceEEEEEeccceeEEEChHHhh
Confidence            345555555543  469999998775321100000      00001  1111   12333332 2346888899999999


Q ss_pred             EEEEeeeccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEee----cccccceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993          269 CLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVN----GAHVGNTKSLARSHTGDFLFTGGEDGAIHMY  343 (520)
Q Consensus       269 ~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~----~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iw  343 (520)
                      ++..+..++.=..+..++..++.+. ..+++.-|+++.....++.    ...-..++.+.|- +|...|-.-.+..|...
T Consensus       123 ~lg~~~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI  201 (262)
T COG3823         123 ELGRFSYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARI  201 (262)
T ss_pred             hhcccccCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEE
Confidence            9999998888888997777777666 6778888887654433332    1112223334442 45555444444445555


Q ss_pred             EcccCccccce------eeeeeecCCcCCEEEEEecC---CEEEEE
Q 009993          344 EIINDCTEANV------LLVATWIPHTGPVNSLAFEF---PWLVSA  380 (520)
Q Consensus       344 d~~~~~~~~~~------~~~~~~~~h~~~v~~l~~~~---~~l~s~  380 (520)
                      |..+++...-+      .....-..|....+.+++.|   +++++|
T Consensus       202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            55555211000      11111223455678888866   355665

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.04  E-value=4.3  Score=39.72  Aligned_cols=141  Identities=12%  Similarity=0.078  Sum_probs=84.5

Q ss_pred             CCCEEE-EEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCC-------EEEEEeCCCcEEEEEcccCcceeeeccCC
Q 009993          153 SAKLLF-TSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKK-------LLVAGGTDGFIHCWRAVEVLPHLFDISGS  224 (520)
Q Consensus       153 ~~~~l~-sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-------~l~sg~~dg~i~vwd~~~~~~~~~~~~~~  224 (520)
                      +..+|+ .|+....+.--|++.|+.+..+..|...+..+.|..+       .-+.|-.+..|.-.|.+-...        
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN--------  549 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN--------  549 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCC--------
Confidence            334444 4555566777788999999988888777777664322       233444455554444322110        


Q ss_pred             ccccceEEe--ccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEcCCeEE
Q 009993          225 EKQNTQFRL--WEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTSGSDVY  298 (520)
Q Consensus       225 ~~~~~~~~~--~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~d~~i~  298 (520)
                        .......  ........+..- ...+++.||..|-|++||--..+....++ ....|..+.  .+|.++++.+...+.
T Consensus       550 --Ki~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yll  627 (776)
T COG5167         550 --KIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLL  627 (776)
T ss_pred             --ceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEE
Confidence              0001111  011122223222 67899999999999999965433333333 455566555  889999999888888


Q ss_pred             EEECC
Q 009993          299 IWDTN  303 (520)
Q Consensus       299 iwd~~  303 (520)
                      +-|++
T Consensus       628 L~d~~  632 (776)
T COG5167         628 LTDVP  632 (776)
T ss_pred             EEecc
Confidence            88875

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=89.06  E-value=23  Score=34.39  Aligned_cols=180  Identities=13%  Similarity=0.061  Sum_probs=98.4

Q ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeCCCC--ceEE--EEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccc
Q 009993          154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLG--CTIR--AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNT  229 (520)
Q Consensus       154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~--~~v~--~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  229 (520)
                      +..++.+..||.|.-.|.+++..+.....-.  ..+.  .+..+| .++.++.+|.+..+|..++...            
T Consensus        68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G-~i~~g~~~g~~y~ld~~~G~~~------------  134 (370)
T COG1520          68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG-KIYVGSWDGKLYALDASTGTLV------------  134 (370)
T ss_pred             CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC-eEEEecccceEEEEECCCCcEE------------
Confidence            3346666888989999999888665433221  0000  011244 4888899998888888766421            


Q ss_pred             eEEeccCC-CCeEE-EEEcCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe------eCCCEEEEEc---CCeEE
Q 009993          230 QFRLWEHE-GPITS-LALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA------PHDTTVASTS---GSDVY  298 (520)
Q Consensus       230 ~~~~~~h~-~~v~~-l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~------~~~~~l~~~~---d~~i~  298 (520)
                       ....... -.+.. .......++.++.++.+...|..++........... ....      .....++.+.   ++.+.
T Consensus       135 -W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~vy~~~~~~~~~~~  212 (370)
T COG1520         135 -WSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPAIASGTVYVGSDGYDGILY  212 (370)
T ss_pred             -EEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCc-cccccccCceeecceEEEecCCCcceEE
Confidence             1111111 00111 111344555555789999999999988777653322 1111      2233333333   34678


Q ss_pred             EEECCCCeeeEEeecccccceEE---EEecC-----CCCEEEEEeCCCeEEEEEcccC
Q 009993          299 IWDTNSGCLLTVVNGAHVGNTKS---LARSH-----TGDFLFTGGEDGAIHMYEIIND  348 (520)
Q Consensus       299 iwd~~~~~~~~~~~~~~~~~i~~---l~~s~-----~~~~l~tg~~dg~i~iwd~~~~  348 (520)
                      -.|..+|.........+...-..   .....     .+.-+..++.++.+...|..++
T Consensus       213 a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G  270 (370)
T COG1520         213 ALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTG  270 (370)
T ss_pred             EEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCC
Confidence            88888888776643111111110   11111     1223456777888888898888

>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A

Probab=89.02  E-value=0.57  Score=36.20  Aligned_cols=49  Identities=22%  Similarity=0.389  Sum_probs=41.5

Q ss_pred             ccCCCHHHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhhhhhhhcCC
Q 009993           64 ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGL  114 (520)
Q Consensus        64 ~~~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~~~~~~~~~  114 (520)
                      +..+|.+++..||..+.|..|.++..-|....  ..++.+|+.++...|+.
T Consensus         4 vG~~py~ll~piL~~~~~~QL~~iE~~np~l~--~~tdeLW~~~i~rdFp~   52 (109)
T PF06881_consen    4 VGDVPYHLLRPILEKCSPEQLRRIEDNNPHLI--EDTDELWKKLIKRDFPE   52 (109)
T ss_pred             cCCCCHHHHHHHHccCCHHHHHHHHHhCCCcc--hhhHHHHHHHHHhHCcC
Confidence            78899999999999999999999988885433  24679999998888863

In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=88.96  E-value=21  Score=33.84  Aligned_cols=104  Identities=10%  Similarity=0.029  Sum_probs=53.3

Q ss_pred             EEEcCCEEEEEecC-----CeEEEEECCCCcE---EEEee-eccC---EEEEeeCCCEEEEEc-C-----CeEEEEECCC
Q 009993          243 LALDLTRIYSGSWD-----MTVRVWDRALLKC---LKVLR-HSDW---VYGLAPHDTTVASTS-G-----SDVYIWDTNS  304 (520)
Q Consensus       243 l~~~~~~l~s~s~d-----g~v~iwd~~~~~~---~~~~~-~~~~---v~~~~~~~~~l~~~~-d-----~~i~iwd~~~  304 (520)
                      +.+++..++.|+.+     ..+..+|+.+.+.   ...+. .+.+   ..+...++++.+.|+ .     ..+..||+.+
T Consensus        69 ~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~  148 (323)
T TIGR03548        69 VSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLET  148 (323)
T ss_pred             EEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCC
Confidence            34466666777654     3566777766543   12221 1111   112225666666655 2     3588899886


Q ss_pred             Cee--eEEeecccccceEEEEecCCCCEEEEEeCCCe----EEEEEcccC
Q 009993          305 GCL--LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA----IHMYEIIND  348 (520)
Q Consensus       305 ~~~--~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~----i~iwd~~~~  348 (520)
                      .+=  +..+.  ........+...++++.+.|+.++.    +.+||+.+.
T Consensus       149 ~~W~~~~~~p--~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~  196 (323)
T TIGR03548       149 QEWFELPDFP--GEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN  196 (323)
T ss_pred             CCeeECCCCC--CCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence            542  22121  1111112222335677777876643    567887765

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=88.94  E-value=15  Score=32.31  Aligned_cols=95  Identities=21%  Similarity=0.154  Sum_probs=61.4

Q ss_pred             CCeEEEEEcC---CEEEEEecCCeEEEEE--CCCCcE-----EEEeeec-------cCEEEEeeCCCEEEEEc-CCeEEE
Q 009993          238 GPITSLALDL---TRIYSGSWDMTVRVWD--RALLKC-----LKVLRHS-------DWVYGLAPHDTTVASTS-GSDVYI  299 (520)
Q Consensus       238 ~~v~~l~~~~---~~l~s~s~dg~v~iwd--~~~~~~-----~~~~~~~-------~~v~~~~~~~~~l~~~~-d~~i~i  299 (520)
                      +--+.++|+.   .+.++-+.+-+|.-||  ..+|..     +..++..       ..=+++..+|++.+++- .++|..
T Consensus       158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~  237 (310)
T KOG4499|consen  158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQK  237 (310)
T ss_pred             cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEE
Confidence            3345677732   3455667777887787  555532     2222211       11234456677777777 899999


Q ss_pred             EECCCCeeeEEeecccccceEEEEecC-CCCEEEE
Q 009993          300 WDTNSGCLLTVVNGAHVGNTKSLARSH-TGDFLFT  333 (520)
Q Consensus       300 wd~~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~t  333 (520)
                      +|+.+|+.+.++.. ....|++++|-- +-+.+++
T Consensus       238 ~dp~tGK~L~eikl-Pt~qitsccFgGkn~d~~yv  271 (310)
T KOG4499|consen  238 VDPTTGKILLEIKL-PTPQITSCCFGGKNLDILYV  271 (310)
T ss_pred             ECCCCCcEEEEEEc-CCCceEEEEecCCCccEEEE
Confidence            99999999999885 478899999953 3334443

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=88.75  E-value=23  Score=33.98  Aligned_cols=51  Identities=16%  Similarity=0.017  Sum_probs=26.0

Q ss_pred             EEEcCCEEEEEecC-----------CeEEEEECCCCcEEEEe-eecc---CEEEE-eeCCCEEEEEc
Q 009993          243 LALDLTRIYSGSWD-----------MTVRVWDRALLKCLKVL-RHSD---WVYGL-APHDTTVASTS  293 (520)
Q Consensus       243 l~~~~~~l~s~s~d-----------g~v~iwd~~~~~~~~~~-~~~~---~v~~~-~~~~~~l~~~~  293 (520)
                      ...++...+.|+.+           ..+..||..+.+-...- ..+.   ....+ ..++++.+.|+
T Consensus        60 ~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG  126 (346)
T TIGR03547        60 AAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGG  126 (346)
T ss_pred             EEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcC
Confidence            33466767777653           24777887765433221 1111   11223 35667767665

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.69  E-value=14  Score=36.61  Aligned_cols=28  Identities=21%  Similarity=0.069  Sum_probs=22.9

Q ss_pred             cceEEEEecCCCCEEEEEeCCCeEEEEE
Q 009993          317 GNTKSLARSHTGDFLFTGGEDGAIHMYE  344 (520)
Q Consensus       317 ~~i~~l~~s~~~~~l~tg~~dg~i~iwd  344 (520)
                      -.|..+..++.|..++-.+.+|.+.++=
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeL  131 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMEL  131 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEc
Confidence            3577888999999999999999776654

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=88.55  E-value=23  Score=33.65  Aligned_cols=62  Identities=8%  Similarity=0.024  Sum_probs=34.1

Q ss_pred             EcCCEEEEEec-----CCeEEEEECCCCcEEEE--eeecc--CEEEEeeCCCEEEEEc-CC----eEEEEECCCCe
Q 009993          245 LDLTRIYSGSW-----DMTVRVWDRALLKCLKV--LRHSD--WVYGLAPHDTTVASTS-GS----DVYIWDTNSGC  306 (520)
Q Consensus       245 ~~~~~l~s~s~-----dg~v~iwd~~~~~~~~~--~~~~~--~v~~~~~~~~~l~~~~-d~----~i~iwd~~~~~  306 (520)
                      +++...+.|+.     ...+..||..+.+-...  +....  ....+..++++.+.|+ ++    .+.+||+.+.+
T Consensus       122 ~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       122 KDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             ECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            36666666664     23688888876543222  21111  1122335666666666 42    36788988764

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=88.33  E-value=42  Score=36.46  Aligned_cols=111  Identities=14%  Similarity=0.149  Sum_probs=74.2

Q ss_pred             cCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee---eccCEEEEeeCCCEEEEEc-CCe--EEEEECCCCeee
Q 009993          235 EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLAPHDTTVASTS-GSD--VYIWDTNSGCLL  308 (520)
Q Consensus       235 ~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~l~~~~-d~~--i~iwd~~~~~~~  308 (520)
                      .-.++|.+++--.+++++|-. ..+++||+-..+.++...   .+..|..+...+..+++|. ...  ...|+....+.+
T Consensus       933 ~~~~~v~Ai~~f~~~~LagvG-~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~ 1011 (1205)
T KOG1898|consen  933 EIPGPVGAICPFQGRVLAGVG-RFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQLI 1011 (1205)
T ss_pred             CCCccceEEeccCCEEEEecc-cEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeEE
Confidence            345677777775566665543 689999998877666554   3667888888888888887 333  445666666665


Q ss_pred             EEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEccc
Q 009993          309 TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIN  347 (520)
Q Consensus       309 ~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~  347 (520)
                      ......-...|+++.+- |...++.+..=|.+.+-.+..
T Consensus      1012 ~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1012 VFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred             EEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence            55544445567766654 556677777777776665543

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=88.06  E-value=12  Score=29.84  Aligned_cols=109  Identities=9%  Similarity=-0.011  Sum_probs=65.1

Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEECCCCc--------EEEEeCCCCceEEEEe-------cCCCEEEEEeCCCcEEEEEc
Q 009993          147 TVFVLASAKLLFTSGYDSIVRMWHLEDGF--------SIASSKPLGCTIRAVA-------ADKKLLVAGGTDGFIHCWRA  211 (520)
Q Consensus       147 ~l~~~~~~~~l~sgs~dg~v~vwd~~~~~--------~~~~~~~~~~~v~~~~-------~~~~~l~sg~~dg~i~vwd~  211 (520)
                      .-.|......|+.++.-|.|.|.+.....        .+..+ .-+..|.++.       .....|+.|+. ..+..||+
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV   80 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV   80 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence            34566666788888899999999876432        22222 2234555554       23456777765 46889998


Q ss_pred             ccCcceeeeccCCccccceEEeccCCCCeEEEEE-----cCCEEEEEecCCeEEEEECCCCcEEE
Q 009993          212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-----DLTRIYSGSWDMTVRVWDRALLKCLK  271 (520)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-----~~~~l~s~s~dg~v~iwd~~~~~~~~  271 (520)
                      ....              ..-++.-...|.++.+     ...-++..+.+..|.-||.+..+...
T Consensus        81 ~~N~--------------d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW  131 (136)
T PF14781_consen   81 ENNS--------------DLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW  131 (136)
T ss_pred             ccCc--------------hhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence            7652              1122334567888877     12334444445778888876555443

>PF13013 F-box-like_2: F-box-like domain

Probab=87.98  E-value=0.62  Score=35.66  Aligned_cols=35  Identities=26%  Similarity=0.232  Sum_probs=29.4

Q ss_pred             CcccccccCCCHHHHHHHccCCChhhhHHHhhhhh
Q 009993           58 NLHRSTITDLPPALISEILNCLDPKELGIVSCVSP   92 (520)
Q Consensus        58 ~~~~~~~~~LP~el~~~i~~~L~~~~l~~~s~v~~   92 (520)
                      ..+.-.+.+||.||+..|+.|.++.++..+...|+
T Consensus        16 ~~~~ltl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   16 NRQSLTLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             CccccchhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            33333578899999999999999999988888887

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.84  E-value=22  Score=32.61  Aligned_cols=165  Identities=10%  Similarity=0.042  Sum_probs=95.9

Q ss_pred             hccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC---CCceEEEEecCCCEEEEEeCCCcEEEEEcccC
Q 009993          138 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP---LGCTIRAVAADKKLLVAGGTDGFIHCWRAVEV  214 (520)
Q Consensus       138 l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~  214 (520)
                      +.|-+..|.++.|+|+.+.|++......-.||=...|+.+.+++-   |...-....-++.+.++--.++.+.+..+...
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            456667799999999999999998888888888888998888752   33333344455666666666777777766544


Q ss_pred             cceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCeEEEEECCCCcEEEEee----ec-------cCEEE
Q 009993          215 LPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLR----HS-------DWVYG  281 (520)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~----~~-------~~v~~  281 (520)
                      ...+. ..  ............+.....++|++  ..|+.+-+-.-+.||.+......-...    +.       ..|.+
T Consensus       161 t~~~~-~~--~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg  237 (316)
T COG3204         161 TTVIS-AK--VQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG  237 (316)
T ss_pred             ccEEe-cc--ceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence            21110 00  00001111112256677889943  567777766667777665332111110    11       11223


Q ss_pred             Ee---eCCCEEEEEc-CCeEEEEECCCC
Q 009993          282 LA---PHDTTVASTS-GSDVYIWDTNSG  305 (520)
Q Consensus       282 ~~---~~~~~l~~~~-d~~i~iwd~~~~  305 (520)
                      +.   ..+.+++.+. ++.+.-.|....
T Consensus       238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         238 LEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             ceecCCCCcEEEEecCCceEEEEecCCC
Confidence            33   3456666666 566777776543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=87.55  E-value=25  Score=33.01  Aligned_cols=88  Identities=14%  Similarity=0.106  Sum_probs=57.0

Q ss_pred             EEEeeCCCEEEEEc--CCeEEEEECCC--C----eeeEEeecccccceEEEEecCCCCEEEEEeCCC-eEEEEEcccCcc
Q 009993          280 YGLAPHDTTVASTS--GSDVYIWDTNS--G----CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG-AIHMYEIINDCT  350 (520)
Q Consensus       280 ~~~~~~~~~l~~~~--d~~i~iwd~~~--~----~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg-~i~iwd~~~~~~  350 (520)
                      .+++|+++.++.+.  .+.|+-|++..  +    +..........+..-.++...+|.+.+++..+| .|.+|+.. +  
T Consensus       168 la~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G--  244 (307)
T COG3386         168 LAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G--  244 (307)
T ss_pred             eEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C--
Confidence            35569998887776  47888887752  1    111122212345556677777888776555554 89999988 6  


Q ss_pred             ccceeeeeeecCCcCCEEEEEecC
Q 009993          351 EANVLLVATWIPHTGPVNSLAFEF  374 (520)
Q Consensus       351 ~~~~~~~~~~~~h~~~v~~l~~~~  374 (520)
                          +.+....-....+++++|-+
T Consensus       245 ----~l~~~i~lP~~~~t~~~FgG  264 (307)
T COG3386         245 ----KLLGEIKLPVKRPTNPAFGG  264 (307)
T ss_pred             ----cEEEEEECCCCCCccceEeC
Confidence                45666655557788999944

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=87.42  E-value=10  Score=36.74  Aligned_cols=166  Identities=13%  Similarity=0.067  Sum_probs=103.6

Q ss_pred             HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEE-EEeC-CCCce----EE---EEecCCCEEEEEeCC
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI-ASSK-PLGCT----IR---AVAADKKLLVAGGTD  203 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~-~~~~-~~~~~----v~---~~~~~~~~l~sg~~d  203 (520)
                      +.++.|..--..|..+-+.|||+.++.-+. .++.|+++.+.... +.+. ...+.    |.   .+-..+..+.+++.|
T Consensus       211 e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~d  289 (733)
T COG4590         211 EIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHED  289 (733)
T ss_pred             hhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCC
Confidence            345556666778888889999998887665 67889988754321 1111 10111    11   112456678899999


Q ss_pred             CcEEEE-EcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--eccC
Q 009993          204 GFIHCW-RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDW  278 (520)
Q Consensus       204 g~i~vw-d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~  278 (520)
                      |.|.-| |+..+..        ........+.-...++..+..  +.+-+++-+..|++..+.....+.+-.-.  ....
T Consensus       290 G~vsQWFdvr~~~~--------p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~  361 (733)
T COG4590         290 GLVSQWFDVRRDGQ--------PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQ  361 (733)
T ss_pred             CceeeeeeeecCCC--------CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcc
Confidence            999887 4443321        111122222222344555554  33558888899999988765554433322  4556


Q ss_pred             EEEEeeCCCEEEEEcCCeEEEEECCCCee
Q 009993          279 VYGLAPHDTTVASTSGSDVYIWDTNSGCL  307 (520)
Q Consensus       279 v~~~~~~~~~l~~~~d~~i~iwd~~~~~~  307 (520)
                      +..++|.+.++++-..|.++++.+++..+
T Consensus       362 ~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~P  390 (733)
T COG4590         362 LVAMSPNQAYLLSEDQGKIRLAQLENRNP  390 (733)
T ss_pred             eeeeCcccchheeecCCceEEEEecCCCC
Confidence            77788999999998899999998877544

>PRK10115 protease 2; Provisional

Probab=87.39  E-value=44  Score=35.63  Aligned_cols=192  Identities=9%  Similarity=-0.069  Sum_probs=96.5

Q ss_pred             ccEEEEEEccCCCEEEEEeC-----CCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCC------CcEEEEEc
Q 009993          143 EAVLTVFVLASAKLLFTSGY-----DSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTD------GFIHCWRA  211 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~sgs~-----dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~d------g~i~vwd~  211 (520)
                      -.+..+.++|||++|+-+..     ...|++-|+.+|..+...........++.++++.|+....+      ..|..+++
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l  206 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI  206 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence            45777889999998886533     23588999988864332222222335677888766655442      25666776


Q ss_pred             ccCcceeeeccCCccccceEEeccCCCCeE--EEEE-cCCEEEEEec---CCeEEEEECC--CCcEEEEee-eccCEEEE
Q 009993          212 VEVLPHLFDISGSEKQNTQFRLWEHEGPIT--SLAL-DLTRIYSGSW---DMTVRVWDRA--LLKCLKVLR-HSDWVYGL  282 (520)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~l~~-~~~~l~s~s~---dg~v~iwd~~--~~~~~~~~~-~~~~v~~~  282 (520)
                      .++..           .....+........  .... ++.+++..+.   ++.+.+++..  ++.....+. .......+
T Consensus       207 gt~~~-----------~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  275 (686)
T PRK10115        207 GTPAS-----------QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSL  275 (686)
T ss_pred             CCChh-----------HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEE
Confidence            66521           01111212122222  1112 5666554433   3568888843  333222233 22233333


Q ss_pred             ee-CCCEEEEEc-C---CeEEEEECCCCeeeEEeeccc-ccceEEEEecCCCCEEEEEeCCCeEEEEEcc
Q 009993          283 AP-HDTTVASTS-G---SDVYIWDTNSGCLLTVVNGAH-VGNTKSLARSHTGDFLFTGGEDGAIHMYEII  346 (520)
Q Consensus       283 ~~-~~~~l~~~~-d---~~i~iwd~~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~  346 (520)
                      .. .+.+++... +   ..|...++........+.... ...+..+.+. .+.++++...+|.-+++-+.
T Consensus       276 ~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        276 DHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             EeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence            33 333333333 2   234444554211222333221 2367777776 34566667778776665554

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=86.96  E-value=4.4  Score=39.56  Aligned_cols=80  Identities=11%  Similarity=0.052  Sum_probs=57.8

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe----cCC----------------
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA----ADK----------------  194 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~----~~~----------------  194 (520)
                      ...|......+.++..+|++++.|+...=|.|.++|+.++..++.+++-...-..+-    ...                
T Consensus       300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~  379 (415)
T PF14655_consen  300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA  379 (415)
T ss_pred             EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence            445667778899999999999888887779999999999988887776554333321    111                


Q ss_pred             C-EEEEEeCCCcEEEEEcccC
Q 009993          195 K-LLVAGGTDGFIHCWRAVEV  214 (520)
Q Consensus       195 ~-~l~sg~~dg~i~vwd~~~~  214 (520)
                      . +++-+-.-|.|-||.++++
T Consensus       380 l~LvIyaprRg~lEvW~~~~g  400 (415)
T PF14655_consen  380 LFLVIYAPRRGILEVWSMRQG  400 (415)
T ss_pred             EEEEEEeccCCeEEEEecCCC
Confidence            1 2334556788889988765

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.65  E-value=5.2  Score=43.95  Aligned_cols=188  Identities=15%  Similarity=0.175  Sum_probs=99.1

Q ss_pred             HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe---cCC-------CEEEEEeC
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA---ADK-------KLLVAGGT  202 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~---~~~-------~~l~sg~~  202 (520)
                      +++..+. |...=+.+-+-|.=..... +-|+.+.+|+.+++.....+.+-...|..+.   |..       ++++.-+.
T Consensus        70 el~eq~~-~~~~~~~mGiFpeI~RaWi-TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT  147 (1311)
T KOG1900|consen   70 ELLEQFS-NIECKTDMGIFPEIGRAWI-TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT  147 (1311)
T ss_pred             HHHHHhc-CcceeeeeccchhhcceEE-EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc
Confidence            4454444 4444444555554333332 4588999999999888888877666666654   332       23333344


Q ss_pred             CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEE
Q 009993          203 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYG  281 (520)
Q Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~  281 (520)
                      --.|.++-+.-.....    +.........+......|+|+.. +.+.++-++.||  .+|.+.-..      ..+|-..
T Consensus       148 ~~ei~ilgV~~~~~~~----~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~------~~gWf~~  215 (1311)
T KOG1900|consen  148 PVEIVILGVSFDEFTG----ELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDG--NLYELVYQA------EDGWFGS  215 (1311)
T ss_pred             cceEEEEEEEeccccC----cccccccceeeecCCceEEEEEeccCCcEEEeecCC--CEEEEEEec------cCchhhc
Confidence            4456665442221100    00001111333344567788886 555555666666  444431000      0000000


Q ss_pred             EeeCCCEEEEEcCCeEEEEECCCCe------eeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993          282 LAPHDTTVASTSGSDVYIWDTNSGC------LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  348 (520)
Q Consensus       282 ~~~~~~~l~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~  348 (520)
                                    ..+..++..+.      .+..+...+..+|..+......+.+.+=++.|+|.+||+...
T Consensus       216 --------------rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  216 --------------RCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             --------------ccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence                          00011111000      011111347789999999888889999999999999999874

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=86.40  E-value=31  Score=34.25  Aligned_cols=32  Identities=19%  Similarity=0.321  Sum_probs=25.6

Q ss_pred             cceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993          317 GNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  348 (520)
Q Consensus       317 ~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~  348 (520)
                      ..|..++..+..+.+++...+|.|.+|++..+
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~  221 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG  221 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence            34889999998899999999999999999753

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=86.09  E-value=23  Score=31.20  Aligned_cols=86  Identities=10%  Similarity=-0.035  Sum_probs=52.7

Q ss_pred             EEEEEeCCCcEEEEE--cccCcc----eeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcE
Q 009993          196 LLVAGGTDGFIHCWR--AVEVLP----HLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKC  269 (520)
Q Consensus       196 ~l~sg~~dg~i~vwd--~~~~~~----~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~  269 (520)
                      +.++-+.+-+|.-||  ..+|..    .++++....+..      ...-.=.++.-+|+..+++-..++|...|..+|+.
T Consensus       172 fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e------~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~  245 (310)
T KOG4499|consen  172 FYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFE------SLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKI  245 (310)
T ss_pred             EEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcC------CCCCCcceEccCCcEEEEEecCcEEEEECCCCCcE
Confidence            445666778887787  555432    222222211110      00011123333778888888889999999999999


Q ss_pred             EEEee-eccCEEEEeeCCC
Q 009993          270 LKVLR-HSDWVYGLAPHDT  287 (520)
Q Consensus       270 ~~~~~-~~~~v~~~~~~~~  287 (520)
                      +..+. ....|++.+..|.
T Consensus       246 L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  246 LLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             EEEEEcCCCceEEEEecCC
Confidence            99998 6677888875443

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=85.95  E-value=18  Score=39.06  Aligned_cols=130  Identities=13%  Similarity=0.136  Sum_probs=86.7

Q ss_pred             CeEEEEECC-CCcE---EEEeeeccCEEEEeeCCCEEEEEcCCeEEEEECCCCeeeEEeeccc-ccceEEEEecCCCCEE
Q 009993          257 MTVRVWDRA-LLKC---LKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAH-VGNTKSLARSHTGDFL  331 (520)
Q Consensus       257 g~v~iwd~~-~~~~---~~~~~~~~~v~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l  331 (520)
                      |.++.|++- .++.   ++.......+.++.+....+.+|-+..+++||+...+++++....+ ...|+.+.+  .+..+
T Consensus       912 g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI  989 (1205)
T KOG1898|consen  912 GFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARI  989 (1205)
T ss_pred             CceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEE
Confidence            446666543 3342   2333356788889988888888889999999999888777665444 456667666  46788


Q ss_pred             EEEeCCCeEEEEEcccCccccceeeeeeecCC--cCCEEEEEe-cCCEEEEEeCCCcEEEEeCCc
Q 009993          332 FTGGEDGAIHMYEIINDCTEANVLLVATWIPH--TGPVNSLAF-EFPWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       332 ~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~-~~~~l~s~s~dg~i~vwd~~~  393 (520)
                      ++|...-.+.++..+...     ..+..+...  ...|+++.+ +.+.++.+..=|.+.+-.+..
T Consensus       990 ~VgD~qeSV~~~~y~~~~-----n~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen  990 VVGDIQESVHFVRYRRED-----NQLIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred             EEeeccceEEEEEEecCC-----CeEEEEeCCCccceeeEEEEecCCceeeccccCcEEEEECCC
Confidence            888877777776655442     223333322  235666666 668888888888887776653

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.56  E-value=14  Score=40.89  Aligned_cols=30  Identities=7%  Similarity=0.055  Sum_probs=25.4

Q ss_pred             ccEEEEEEccCCCEEEEEeCCCeEEEEECC
Q 009993          143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLE  172 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~  172 (520)
                      .....++|+|...+++.|+.+|.|+++-..
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~   65 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQP   65 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEeccc
Confidence            344677899999999999999999999754

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=85.40  E-value=32  Score=32.17  Aligned_cols=139  Identities=14%  Similarity=0.085  Sum_probs=64.5

Q ss_pred             cCCEEEEEecCCeEEEEECCCCcEEEEee--eccCEEEEe--eCCCEEEEEcCCeE-EEEECCCCeeeEEeecccccceE
Q 009993          246 DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA--PHDTTVASTSGSDV-YIWDTNSGCLLTVVNGAHVGNTK  320 (520)
Q Consensus       246 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~--~~~~~l~~~~d~~i-~iwd~~~~~~~~~~~~~~~~~i~  320 (520)
                      +......++..|.|.. ..+.++.-+.+.  ....+..+.  +++++++++..|.+ .-||.-... -......-...|.
T Consensus       113 ~~~~~~l~~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~r~~~~riq  190 (302)
T PF14870_consen  113 GDGSAELAGDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPHNRNSSRRIQ  190 (302)
T ss_dssp             ETTEEEEEETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EE
T ss_pred             CCCcEEEEcCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc-ceEEccCccceeh
Confidence            4555554555554332 222333322222  345566655  88999999996554 567754321 1111112467899


Q ss_pred             EEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-CEEEEEeCCCcEEE
Q 009993          321 SLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSL  388 (520)
Q Consensus       321 ~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~v  388 (520)
                      .|.|.|++.+.+++ ..|.|++=+......... +.+.......-.+..++|.+ +.+.+++..|.+.+
T Consensus       191 ~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~-~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~  257 (302)
T PF14870_consen  191 SMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS-EPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV  257 (302)
T ss_dssp             EEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE----B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE
T ss_pred             hceecCCCCEEEEe-CCcEEEEccCCCCccccc-cccCCcccCceeeEEEEecCCCCEEEEeCCccEEE
Confidence            99999998876655 888888877222210000 01111112233478899964 56666666665544

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.05  E-value=61  Score=35.09  Aligned_cols=113  Identities=13%  Similarity=0.013  Sum_probs=53.9

Q ss_pred             ccCEEEEeeCCCEEEEEcC-CeEEEEECCCCeeeEEeeccc--ccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccc
Q 009993          276 SDWVYGLAPHDTTVASTSG-SDVYIWDTNSGCLLTVVNGAH--VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA  352 (520)
Q Consensus       276 ~~~v~~~~~~~~~l~~~~d-~~i~iwd~~~~~~~~~~~~~~--~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~  352 (520)
                      .....+.+..+..+.++-. ....++...++.....+..+.  ...-..++-..++..++.| .|+...+-|....... 
T Consensus       157 ~~~p~~~~~~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~~s~~P~I~~l~~~~~ll~~-kd~~gv~vd~~G~~~~-  234 (877)
T KOG2063|consen  157 PDVPKARAWCGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMDNESRKPLIKSLSDQSELLLG-KDNIGVVVDLNGIIAQ-  234 (877)
T ss_pred             ccchhhhcccceeEEEeecceeEEEecCCCccccceeeeccccccCCCeEEEecCCceEEEc-cCceEEEEecCCcccC-
Confidence            3333444455555555553 344444444442111111111  1111223333455456655 6666666675444210 


Q ss_pred             ceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccc
Q 009993          353 NVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLR  396 (520)
Q Consensus       353 ~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~  396 (520)
                          ..++ .-......+.+...++++-+.. .|.||+..+...
T Consensus       235 ----~~~l-~ws~~P~~v~~~~PYlIa~~~~-~veI~s~~~~ql  272 (877)
T KOG2063|consen  235 ----RGTL-VWSEVPLSVVVESPYLIALLDR-SVEIRSKLDGQL  272 (877)
T ss_pred             ----CCce-EecccchhhcccCceEEEEccc-cEEEEeccCHHH
Confidence                0000 0122345556666777776655 999999988633

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.82  E-value=22  Score=34.60  Aligned_cols=146  Identities=10%  Similarity=0.069  Sum_probs=0.0

Q ss_pred             CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEc---ccCccccceeeeeee
Q 009993          285 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI---INDCTEANVLLVATW  360 (520)
Q Consensus       285 ~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~---~~~~~~~~~~~~~~~  360 (520)
                      +..++++.+ +-+=.+-...+......+.....++|.++.|++|.+.+|+--.|.+|.+++.   .+..     ....+.
T Consensus        34 NkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l-----~~~~~c  108 (657)
T KOG2377|consen   34 NKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL-----EYTQEC  108 (657)
T ss_pred             cceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh-----HHHHHh


Q ss_pred             cCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC----EE
Q 009993          361 IPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD----RI  436 (520)
Q Consensus       361 ~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~l  436 (520)
                      ...+..|....|..+.=++--.+.-+.+|-....                  ....+....|...|.-..+..+    .|
T Consensus       109 k~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pe------------------krslRlVks~~~nvnWy~yc~et~v~LL  170 (657)
T KOG2377|consen  109 KTKNANILGFCWTSSTEIAFITDQGIEFYQVLPE------------------KRSLRLVKSHNLNVNWYMYCPETAVILL  170 (657)
T ss_pred             ccCcceeEEEEEecCeeEEEEecCCeEEEEEchh------------------hhhhhhhhhcccCccEEEEccccceEee


Q ss_pred             EEecCCCeEEEEeCCch
Q 009993          437 VCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       437 ~sg~~Dg~v~iwd~~~~  453 (520)
                      +|+-...++.=+-++++
T Consensus       171 ~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  171 STTVLENVLNPFHFRAG  187 (657)
T ss_pred             eccccccccccEEEeec

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=84.61  E-value=39  Score=32.43  Aligned_cols=37  Identities=5%  Similarity=-0.077  Sum_probs=18.8

Q ss_pred             CeEEEEECCCCcEEEE--eeec-cCEEEE-eeCCCEEEEEc
Q 009993          257 MTVRVWDRALLKCLKV--LRHS-DWVYGL-APHDTTVASTS  293 (520)
Q Consensus       257 g~v~iwd~~~~~~~~~--~~~~-~~v~~~-~~~~~~l~~~~  293 (520)
                      ..+..||..+.+-...  +... ..-.++ ..++++++.|+
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG  208 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLING  208 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEee
Confidence            4688889876543322  2211 111223 35667766665

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=84.15  E-value=51  Score=33.45  Aligned_cols=146  Identities=16%  Similarity=0.137  Sum_probs=84.1

Q ss_pred             CCCeEEEEE-cCCEEEEEe---cCCeEEEEECCCCcEEEEeeeccCEEEEe-------eCCCEEEEEcCCeEEEEECCC-
Q 009993          237 EGPITSLAL-DLTRIYSGS---WDMTVRVWDRALLKCLKVLRHSDWVYGLA-------PHDTTVASTSGSDVYIWDTNS-  304 (520)
Q Consensus       237 ~~~v~~l~~-~~~~l~s~s---~dg~v~iwd~~~~~~~~~~~~~~~v~~~~-------~~~~~l~~~~d~~i~iwd~~~-  304 (520)
                      -.+|..++| ||+.++-..   .+|.+++=|.   ..+..|.|   |..+.       ....++|+-....|.+|.+.. 
T Consensus        19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~viGqFEh---V~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s   92 (671)
T PF15390_consen   19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVIGQFEH---VHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS   92 (671)
T ss_pred             hccccceEecCCCEEEEEeeeeeCCccccCCc---cEeeccce---eeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence            357889999 887755433   3445544432   23333333   44444       124577777799999998752 


Q ss_pred             ----CeeeEEeec----ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe--cC
Q 009993          305 ----GCLLTVVNG----AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EF  374 (520)
Q Consensus       305 ----~~~~~~~~~----~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~  374 (520)
                          ++.+.....    ...--...+.|+|....|++-.....-.+++++....     .+..=....+.|.|.+|  ++
T Consensus        93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-----rVkaDi~~~G~IhCACWT~DG  167 (671)
T PF15390_consen   93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS-----RVKADIKTSGLIHCACWTKDG  167 (671)
T ss_pred             ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc-----eEEEeccCCceEEEEEecCcC
Confidence                222211111    1111224577999998888766655555677766532     22222245678999999  55


Q ss_pred             CEEEEE-eCCCcEEEEeCCc
Q 009993          375 PWLVSA-AGDGKLSLIDVRK  393 (520)
Q Consensus       375 ~~l~s~-s~dg~i~vwd~~~  393 (520)
                      ++|+.+ +..=.-++||-..
T Consensus       168 ~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  168 QRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             CEEEEEeCCeEEEEEecCch
Confidence            555444 4444568998654

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=84.09  E-value=53  Score=33.55  Aligned_cols=232  Identities=13%  Similarity=0.056  Sum_probs=112.2

Q ss_pred             cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccC-CCCeEEEEE-cCC--EEEEEecC--CeEEEEECC
Q 009993          192 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH-EGPITSLAL-DLT--RIYSGSWD--MTVRVWDRA  265 (520)
Q Consensus       192 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~-~~~--~l~s~s~d--g~v~iwd~~  265 (520)
                      .++..++.+..+|.+....+.....           .......+. .....++.+ +.+  +++.||.-  +.+.-|...
T Consensus       220 ~~~~~~lL~~e~G~l~~l~l~~~~~-----------~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~  288 (504)
T PF10433_consen  220 KDGDRILLQDEDGDLYLLTLDNDGG-----------SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLS  288 (504)
T ss_dssp             TTSSEEEEEETTSEEEEEEEEEEEE-----------EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESE
T ss_pred             CCCCEEEEEeCCCeEEEEEEEECCC-----------eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCC
Confidence            4577899999999998887654320           112222233 455667777 566  88888864  455556655


Q ss_pred             CCcEEEEeeeccCEEEEe-e----C-C-------CEEEEEc---CCeEEEEECCCCee---eEEeecccccceEEEEecC
Q 009993          266 LLKCLKVLRHSDWVYGLA-P----H-D-------TTVASTS---GSDVYIWDTNSGCL---LTVVNGAHVGNTKSLARSH  326 (520)
Q Consensus       266 ~~~~~~~~~~~~~v~~~~-~----~-~-------~~l~~~~---d~~i~iwd~~~~~~---~~~~~~~~~~~i~~l~~s~  326 (520)
                      ..+.+..+..-++|..+. .    . .       +++++++   +|.+++..-.-+-.   ...........++.+....
T Consensus       289 ~l~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~  368 (504)
T PF10433_consen  289 NLEVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSS  368 (504)
T ss_dssp             SEEEEEEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSS
T ss_pred             CcEEEEeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecC
Confidence            556666777777888776 1    1 1       3344433   47788874321111   1111111133444554432


Q ss_pred             -CCCEEEEEeCCCeEEEEEcccCccccceeeee--eecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCC
Q 009993          327 -TGDFLFTGGEDGAIHMYEIINDCTEANVLLVA--TWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSG  403 (520)
Q Consensus       327 -~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~--~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  403 (520)
                       ++.+|+.+..+. -+++.+...........+.  .+......+.+-.+..+.++=....+ |++.+.........    
T Consensus       369 ~~~~~lv~S~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~~~-i~l~~~~~~~~~~~----  442 (504)
T PF10433_consen  369 SDHSYLVLSFPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTPKG-IRLIDLEDGKLTQE----  442 (504)
T ss_dssp             SSBSEEEEEESSE-EEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEESSE-EEEEESSSTSEEEE----
T ss_pred             CCceEEEEEcCCc-eEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEecCe-EEEEECCCCeEEEE----
Confidence             245777666554 4466664210000001110  12222223333333455555555543 67776544211100    


Q ss_pred             CceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchH
Q 009993          404 KRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAF  454 (520)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~  454 (520)
                                    ........+.+.+.++.+++.+-.+|.+..+.+....
T Consensus       443 --------------w~~~~~~~I~~a~~~~~~v~v~~~~~~~~~~~~~~~~  479 (504)
T PF10433_consen  443 --------------WKPPAGSIIVAASINDPQVLVALSGGELVYFELDDNK  479 (504)
T ss_dssp             --------------EE-TTS---SEEEESSSEEEEEE-TTEEEEEEEETTE
T ss_pred             --------------EeCCCCCeEEEEEECCCEEEEEEeCCcEEEEEEECCc
Confidence                          0011334566666777777777778899999887543

...

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=83.64  E-value=27  Score=34.57  Aligned_cols=133  Identities=16%  Similarity=0.164  Sum_probs=78.1

Q ss_pred             EEEecCCeEEEEECCCCcEEEEee-eccCEEEEee--------CCCEEEEEcCCeEEEEECCCCe-eeEEeecccccceE
Q 009993          251 YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAP--------HDTTVASTSGSDVYIWDTNSGC-LLTVVNGAHVGNTK  320 (520)
Q Consensus       251 ~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~--------~~~~l~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~i~  320 (520)
                      ..|..-..++--|++.|+.+.... +...|....|        +...|+.-++..|.-.|++-.. .+....  ....++
T Consensus       484 ~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e--sKdY~t  561 (776)
T COG5167         484 LDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE--SKDYKT  561 (776)
T ss_pred             ecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee--ehhccc
Confidence            344555667777888888888877 4444443332        3556777778777777876432 222221  112222


Q ss_pred             EEEec----CCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe--cCCEEEEEeCCCcEEEEeCC
Q 009993          321 SLARS----HTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       321 ~l~~s----~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~  392 (520)
                      .-.|+    ....++++|+..|.|++||--...      ....+.+-...|..+..  ++.++++.+. ..+.+-|++
T Consensus       562 Kn~Fss~~tTesGyIa~as~kGDirLyDRig~r------AKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         562 KNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR------AKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             cccccccccccCceEEEecCCCceeeehhhcch------hhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            22232    245689999999999999964431      12223344556666665  5566655544 467777775

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=83.53  E-value=2.4  Score=44.34  Aligned_cols=118  Identities=10%  Similarity=0.138  Sum_probs=70.5

Q ss_pred             cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCce-------------EEEEecCCCEEEEEeCCCcEEEEE
Q 009993          144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT-------------IRAVAADKKLLVAGGTDGFIHCWR  210 (520)
Q Consensus       144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~-------------v~~~~~~~~~l~sg~~dg~i~vwd  210 (520)
                      .|.-+-|.++.-++..+-.+++|++.+..+... .-+.+|...             +..++|||..++.++.||.++.|.
T Consensus       185 ~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q  263 (1283)
T KOG1916|consen  185 LVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ  263 (1283)
T ss_pred             eeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence            344444455677888888899999887765432 223345433             335679999999999999999987


Q ss_pred             cccCcceeeeccCCccccceEEeccCC-CCeEEEEEcC-----------CEEEEEe-cCCeEEEEECCCCcEE
Q 009993          211 AVEVLPHLFDISGSEKQNTQFRLWEHE-GPITSLALDL-----------TRIYSGS-WDMTVRVWDRALLKCL  270 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~-----------~~l~s~s-~dg~v~iwd~~~~~~~  270 (520)
                      +.-        .+.....+......|. .+-.|..++.           .++++++ .+..+++|.....+|+
T Consensus       264 iyi--------~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  264 IYI--------TGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             eee--------eccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            521        1112223344444554 3333333411           1244444 3567999998888777

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=83.50  E-value=24  Score=35.02  Aligned_cols=27  Identities=11%  Similarity=0.478  Sum_probs=20.1

Q ss_pred             eEEEEecC--CEEEEecCCCeEEEEeCCc
Q 009993          426 LLSVDIGA--DRIVCGGEEGIVRIWNFSQ  452 (520)
Q Consensus       426 v~~~~~~~--~~l~sg~~Dg~v~iwd~~~  452 (520)
                      +..+..++  +.+++...+|.|.+|++..
T Consensus       192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  192 IVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             eeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            66666554  4999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=83.31  E-value=6.1  Score=23.82  Aligned_cols=30  Identities=20%  Similarity=0.300  Sum_probs=21.6

Q ss_pred             eCCCEEEEEc--CCeEEEEECCCCeeeEEeec
Q 009993          284 PHDTTVASTS--GSDVYIWDTNSGCLLTVVNG  313 (520)
Q Consensus       284 ~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~~  313 (520)
                      |+++.++++.  ++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            3566666655  68889999888887777753

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=82.94  E-value=2.8  Score=43.98  Aligned_cols=58  Identities=19%  Similarity=0.324  Sum_probs=37.4

Q ss_pred             CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe-------------cCCEEEEEeCCCcEEEEeC
Q 009993          327 TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF-------------EFPWLVSAAGDGKLSLIDV  391 (520)
Q Consensus       327 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~-------------~~~~l~s~s~dg~i~vwd~  391 (520)
                      +..++..+-.++.|++.......       ..-+.+|...++.++|             ++..++.+..||.++.|.+
T Consensus       194 ~~~~ic~~~~~~~i~lL~~~ra~-------~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  194 NKVYICYGLKGGEIRLLNINRAL-------RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             ccceeeeccCCCceeEeeechHH-------HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            55677778888999888776652       2334558777776665             3345666666666665554

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=82.88  E-value=42  Score=31.46  Aligned_cols=67  Identities=18%  Similarity=0.075  Sum_probs=50.3

Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCC-------ceEEEEecCCCEEEEEeCCCcEEEEEc
Q 009993          145 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-------CTIRAVAADKKLLVAGGTDGFIHCWRA  211 (520)
Q Consensus       145 V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~l~sg~~dg~i~vwd~  211 (520)
                      |.+|...++|.+|+|.-.-.+|.+.|-.+|+.+..+.+..       ....+...+-+.+-.+..++.|.++|=
T Consensus       146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN  219 (299)
T PF14269_consen  146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN  219 (299)
T ss_pred             eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence            5666778899999999888999999999999998887652       222333355555556677889999985

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=82.63  E-value=50  Score=32.23  Aligned_cols=230  Identities=16%  Similarity=0.080  Sum_probs=129.3

Q ss_pred             EEEEEEccCCCEEEEEe-CCCeEEEEECCCCcEEEEeC-C-CCceEEEEecCCC-EEEEEeCCCcEEEEEcccCcceeee
Q 009993          145 VLTVFVLASAKLLFTSG-YDSIVRMWHLEDGFSIASSK-P-LGCTIRAVAADKK-LLVAGGTDGFIHCWRAVEVLPHLFD  220 (520)
Q Consensus       145 V~~l~~~~~~~~l~sgs-~dg~v~vwd~~~~~~~~~~~-~-~~~~v~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~  220 (520)
                      ...+...+++..+.... ....+...+........... + -...-..+.+.+. ..++...++.|.+.|..+...    
T Consensus        33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~----  108 (381)
T COG3391          33 PGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV----  108 (381)
T ss_pred             CceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce----
Confidence            34566777774444332 22345555544221111111 1 1112334556666 444455568899998654321    


Q ss_pred             ccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec---CCeEEEEECCCCcEEEEeee-ccC-EEEEeeCCCEEEEEc
Q 009993          221 ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW---DMTVRVWDRALLKCLKVLRH-SDW-VYGLAPHDTTVASTS  293 (520)
Q Consensus       221 ~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~-~~~-v~~~~~~~~~l~~~~  293 (520)
                              ......+.  ....+++  +++.++.+..   ++++.+.|..+.+.+....- ..+ -..+.+++..++.+.
T Consensus       109 --------~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~  178 (381)
T COG3391         109 --------LGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTN  178 (381)
T ss_pred             --------eeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEe
Confidence                    11111122  3445555  5666665554   68999999999998888652 223 334448999777766


Q ss_pred             --CCeEEEEECCCCeeeE-Eee--cccccceEEEEecCCCCEEEEEeCC---CeEEEEEcccCccccceeeeee-ecCCc
Q 009993          294 --GSDVYIWDTNSGCLLT-VVN--GAHVGNTKSLARSHTGDFLFTGGED---GAIHMYEIINDCTEANVLLVAT-WIPHT  364 (520)
Q Consensus       294 --d~~i~iwd~~~~~~~~-~~~--~~~~~~i~~l~~s~~~~~l~tg~~d---g~i~iwd~~~~~~~~~~~~~~~-~~~h~  364 (520)
                        ++.|.++|........ ...  ..-......+.++|+|..+.+....   +.+...|..++.      .... .....
T Consensus       179 ~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~------v~~~~~~~~~  252 (381)
T COG3391         179 SDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN------VTATDLPVGS  252 (381)
T ss_pred             cCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce------EEEecccccc
Confidence              7999999977665553 100  0123344678899999976665443   588888888772      2222 11111


Q ss_pred             CCEEEEEecC--CEEEEE-eCCCcEEEEeCCcc
Q 009993          365 GPVNSLAFEF--PWLVSA-AGDGKLSLIDVRKL  394 (520)
Q Consensus       365 ~~v~~l~~~~--~~l~s~-s~dg~i~vwd~~~~  394 (520)
                      .....+..+|  ..+.+. +..+.+.+-|..+.
T Consensus       253 ~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         253 GAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             CCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            1234455554  555555 34578888888764

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.40  E-value=25  Score=38.47  Aligned_cols=79  Identities=16%  Similarity=0.080  Sum_probs=50.9

Q ss_pred             EEcCCeEEEEECCCCee-eEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEE
Q 009993          291 STSGSDVYIWDTNSGCL-LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNS  369 (520)
Q Consensus       291 ~~~d~~i~iwd~~~~~~-~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~  369 (520)
                      .-.|+.|++..+..... +..+  .-....++++|+|.|+.++.|...|++.-|...-...... .+.-..  ....|.+
T Consensus       174 ~l~dlsl~V~~~~~~~~~v~s~--p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~i-p~Pp~~--e~yrvl~  248 (1405)
T KOG3630|consen  174 DLSDLSLRVKSTKQLAQNVTSF--PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEI-PEPPVE--ENYRVLS  248 (1405)
T ss_pred             hccccchhhhhhhhhhhhhccc--CcccceeeEEeccccceeeEecCCCeEEEeecccceeecc-cCCCcC--CCcceeE
Confidence            33388888877654332 2222  2456789999999999999999999999987654411000 000001  1467999


Q ss_pred             EEecC
Q 009993          370 LAFEF  374 (520)
Q Consensus       370 l~~~~  374 (520)
                      |.|-.
T Consensus       249 v~Wl~  253 (1405)
T KOG3630|consen  249 VTWLS  253 (1405)
T ss_pred             EEEec
Confidence            99943

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=81.95  E-value=45  Score=31.21  Aligned_cols=143  Identities=13%  Similarity=0.115  Sum_probs=66.7

Q ss_pred             eEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee----eccCEEEEe--eCCCEEEEEcCCeEEEEECCCCeeeEEeec
Q 009993          240 ITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR----HSDWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNG  313 (520)
Q Consensus       240 v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~----~~~~v~~~~--~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~  313 (520)
                      ..++.+.++....++..+. .+.-.+.++.-..+.    .+.....+.  .++..++++..|.|+. ..+.|+.-..+..
T Consensus        64 l~~I~f~~~~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~-T~DgG~tW~~~~~  141 (302)
T PF14870_consen   64 LNSISFDGNEGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYR-TTDGGKTWQAVVS  141 (302)
T ss_dssp             EEEEEEETTEEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEE-ESSTTSSEEEEE-
T ss_pred             EEEEEecCCceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEE-eCCCCCCeeEccc
Confidence            5567775544444555554 333344444333332    222333333  3333334444454332 2233443333333


Q ss_pred             ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-CEEEEEeCCCcEEEEe
Q 009993          314 AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLID  390 (520)
Q Consensus       314 ~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd  390 (520)
                      .-.+.+..+..+++|.+++++..-....-||.-...    ..+..  ......|..+.|++ ..|......|.|+.=+
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~----w~~~~--r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~  213 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT----WQPHN--RNSSRRIQSMGFSPDGNLWMLARGGQIQFSD  213 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-----EEEE----SSS-EEEEEE-TTS-EEEEETTTEEEEEE
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc----ceEEc--cCccceehhceecCCCCEEEEeCCcEEEEcc
Confidence            456788899999999998888665555567643320    01111  22456899999976 3554556888888877

>PLN02153 epithiospecifier protein

Probab=81.70  E-value=50  Score=31.59  Aligned_cols=103  Identities=17%  Similarity=0.086  Sum_probs=51.5

Q ss_pred             EcCCEEEEEecC-------CeEEEEECCCCcEEEEeee---cc----CEEEEeeCCCEEEEEc-C-----CeEEEEECCC
Q 009993          245 LDLTRIYSGSWD-------MTVRVWDRALLKCLKVLRH---SD----WVYGLAPHDTTVASTS-G-----SDVYIWDTNS  304 (520)
Q Consensus       245 ~~~~~l~s~s~d-------g~v~iwd~~~~~~~~~~~~---~~----~v~~~~~~~~~l~~~~-d-----~~i~iwd~~~  304 (520)
                      .++..++.|+.+       ..+.+||..+.+-......   +.    ....+..++++++.|+ +     ..+.+||+.+
T Consensus        31 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t  110 (341)
T PLN02153         31 VGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVK  110 (341)
T ss_pred             ECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCC
Confidence            355666666653       3578888877543322111   11    1222335666666665 3     3588899887


Q ss_pred             CeeeE--Eeec---ccccceEEEEecCCCCEEEEEeCC-----------CeEEEEEcccC
Q 009993          305 GCLLT--VVNG---AHVGNTKSLARSHTGDFLFTGGED-----------GAIHMYEIIND  348 (520)
Q Consensus       305 ~~~~~--~~~~---~~~~~i~~l~~s~~~~~l~tg~~d-----------g~i~iwd~~~~  348 (520)
                      .+-..  .+..   .....-.+++. -++++++.|+.+           ..+.+||..+.
T Consensus       111 ~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~  169 (341)
T PLN02153        111 NEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADG  169 (341)
T ss_pred             CEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCCC
Confidence            54221  1100   00011112222 355666676653           24777887765

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=81.36  E-value=1.3  Score=42.30  Aligned_cols=37  Identities=22%  Similarity=0.208  Sum_probs=32.2

Q ss_pred             ccCCCHHHHHHHccCC-ChhhhHHHhhhhhhHHHhhcC
Q 009993           64 ITDLPPALISEILNCL-DPKELGIVSCVSPILHRLASD  100 (520)
Q Consensus        64 ~~~LP~el~~~i~~~L-~~~~l~~~s~v~~~~~~~~~~  100 (520)
                      -..||+|++..|...| ..-|+.+.+.||+.|+.-+..
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            3579999999999999 556999999999999987753

>PLN02193 nitrile-specifier protein

Probab=81.23  E-value=65  Score=32.55  Aligned_cols=146  Identities=14%  Similarity=0.002  Sum_probs=69.8

Q ss_pred             CCCEEEEEeCC-------CeEEEEECCCCcEEEEeCC-----C-C-ceEEEEecCCCEEEEEeCCC-----cEEEEEccc
Q 009993          153 SAKLLFTSGYD-------SIVRMWHLEDGFSIASSKP-----L-G-CTIRAVAADKKLLVAGGTDG-----FIHCWRAVE  213 (520)
Q Consensus       153 ~~~~l~sgs~d-------g~v~vwd~~~~~~~~~~~~-----~-~-~~v~~~~~~~~~l~sg~~dg-----~i~vwd~~~  213 (520)
                      ++.+++.|+.+       ..+.+||+.+.+-.. ...     . . ........++.+.+.|+.++     .+.++|+.+
T Consensus       175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t  253 (470)
T PLN02193        175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT  253 (470)
T ss_pred             CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCC
Confidence            35566666643       246778887654321 111     1 0 11122335666777777653     467777765


Q ss_pred             CcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCC-----eEEEEECCCCcEEEEee------eccCEEEE
Q 009993          214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDM-----TVRVWDRALLKCLKVLR------HSDWVYGL  282 (520)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg-----~v~iwd~~~~~~~~~~~------~~~~v~~~  282 (520)
                      ..-........   .     ............++..++.|+.++     .+..||+.+.+-...-.      ........
T Consensus       254 ~~W~~l~~~~~---~-----P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~  325 (470)
T PLN02193        254 NEWKLLTPVEE---G-----PTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLE  325 (470)
T ss_pred             CEEEEcCcCCC---C-----CCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEE
Confidence            43211110000   0     000111122233566666776543     46778877654322111      01111122


Q ss_pred             eeCCCEEEEEc-C----CeEEEEECCCCee
Q 009993          283 APHDTTVASTS-G----SDVYIWDTNSGCL  307 (520)
Q Consensus       283 ~~~~~~l~~~~-d----~~i~iwd~~~~~~  307 (520)
                      ..++++++.++ +    ..+.+||+.+.+-
T Consensus       326 ~~~gkiyviGG~~g~~~~dv~~yD~~t~~W  355 (470)
T PLN02193        326 VVQGKVWVVYGFNGCEVDDVHYYDPVQDKW  355 (470)
T ss_pred             EECCcEEEEECCCCCccCceEEEECCCCEE
Confidence            35666666665 4    4689999987653

>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]

Probab=81.20  E-value=55  Score=31.72  Aligned_cols=33  Identities=18%  Similarity=0.306  Sum_probs=23.7

Q ss_pred             cCcceeeEEEEecCC-EEEEecCCCeEEEEeCCc
Q 009993          420 HGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQ  452 (520)
Q Consensus       420 ~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~  452 (520)
                      ......+..++..|+ .+++-+.+..|.+|....
T Consensus       427 ~s~~~~i~~ls~gGdRlfv~rs~~~~v~vw~~~~  460 (465)
T KOG2714|consen  427 PSAGGLIVRLSSGGDRLFVVRSVESPVTVWEVLE  460 (465)
T ss_pred             cccCCcEEEEecCCeeEEEEEeccCceeEEEecC
Confidence            344456777888887 666677788899998764

>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]

Probab=80.81  E-value=0.49  Score=43.26  Aligned_cols=49  Identities=22%  Similarity=0.202  Sum_probs=43.1

Q ss_pred             ccCCCHHHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhhhhhhhc
Q 009993           64 ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERW  112 (520)
Q Consensus        64 ~~~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~~~~~~~  112 (520)
                      +..||..++..++++++++.+.++++|+++..++.+...+|++.+...|
T Consensus         8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l   56 (386)
T KOG4408|consen    8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYL   56 (386)
T ss_pred             hhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccc
Confidence            6778889999999999999999999999999999999999987543444

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=80.58  E-value=47  Score=34.61  Aligned_cols=67  Identities=10%  Similarity=0.122  Sum_probs=43.6

Q ss_pred             cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcE--EEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEc
Q 009993          142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS--IASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRA  211 (520)
Q Consensus       142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~  211 (520)
                      ..-++++.-+|.|+-++.++.||.|++|+......  +.+....   -..+...+.-|+++..|..+.-|.-
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p---~~nlv~tnhgl~~~tsdrr~la~~~   82 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKP---KENLVFTNHGLVTATSDRRALAWKE   82 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCC---ccceeeeccceEEEeccchhheeec
Confidence            34567888889999999999999999999865543  2222111   1112223445677777777777754

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=80.31  E-value=60  Score=31.61  Aligned_cols=62  Identities=18%  Similarity=0.049  Sum_probs=29.4

Q ss_pred             CCCEEEEEeC-CCeEEEEECCCC----cEEEEeCC-CCceEEEEecCCCEEEEEeCCC-----------cEEEEEcccC
Q 009993          153 SAKLLFTSGY-DSIVRMWHLEDG----FSIASSKP-LGCTIRAVAADKKLLVAGGTDG-----------FIHCWRAVEV  214 (520)
Q Consensus       153 ~~~~l~sgs~-dg~v~vwd~~~~----~~~~~~~~-~~~~v~~~~~~~~~l~sg~~dg-----------~i~vwd~~~~  214 (520)
                      ++++.+.|+. +..+.++|+...    ..+..+.. ..........++.+.+.|+.+.           .+..||..+.
T Consensus        38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n  116 (376)
T PRK14131         38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN  116 (376)
T ss_pred             CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC
Confidence            4555554443 445677777532    12222221 1111222335667777776542           3556666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	520
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		5e-13
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-09
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		4e-09
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-09
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-09
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		6e-09
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		6e-09
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		7e-09
2h9l_A	329	Wdr5delta23 Length = 329		7e-09
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		7e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		7e-09
2g99_A	308	Structural Basis For The Specific Recognition Of Me		7e-09
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		7e-09
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		8e-09
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		9e-09
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		9e-09
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-08
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-08
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-08
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-08
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-07
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		6e-07
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		2e-06
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-05
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-04
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		6e-04
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		7e-04

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 83/418 (19%), Positives = 158/418 (37%), Gaps = 66/418 (15%)
Query: 58  NLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLP-- 115
              R  I+ LP  L   +L+ L+PK+L   +        LA D+  W+E  C+  G+   
Sbjct: 13  QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWRE-KCKEEGIDEP 71
Query: 116 ------------IASAPLGAGF----SDDKSWK--ELID--VLYGHTEAVLTVFVLASAK 155
                          +P  + +      D +W+  EL    VL GH + V+T       +
Sbjct: 72  LHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNR 131
Query: 156 LLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVL 215
           ++  S  D+ +++W    G  + +       + +      ++++G TD  +  W A    
Sbjct: 132 IVSGSD-DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNA---- 186
Query: 216 PHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRH 275
                    E       L+ H   +  + L   R+ SGS D T+RVWD    +CL VL  
Sbjct: 187 ---------ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMG 237
Query: 276 SDWVYGLAPHDTTVASTSGSD--VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT 333
                    +D     +   D  V +WD  +   L  + G H     SL     G  + +
Sbjct: 238 HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG-HTNRVYSL--QFDGIHVVS 294
Query: 334 GGEDGAIHMYEI-INDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVR 392
           G  D +I ++++   +C       + T   H    + +  +   LVS   D  + + D++
Sbjct: 295 GSLDTSIRVWDVETGNC-------IHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIK 347
Query: 393 KLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNF 450
                    +G+ +     ++ P +      C    +    + ++   ++G V++W+ 
Sbjct: 348 ---------TGQCLQ---TLQGPNKHQSAVTC----LQFNKNFVITSSDDGTVKLWDL 389

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 99/210 (47%), Gaps = 35/210 (16%)
Query: 115 PIASAPLGAGFSDDKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG 174
           P+ S P+   ++       L   L GHT+AV +V    + + L +S  D ++++W   DG
Sbjct: 2   PLGSTPVKPNYA-------LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG 54
Query: 175 F--SIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQ 227
                 S   LG +  A ++D  LLV+   D  +  W          D+S  +     K 
Sbjct: 55  KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW----------DVSSGKCLKTLKG 104
Query: 228 NTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAPH- 285
           ++ +    +  P ++L      I SGS+D +VR+WD    KCLK L  HSD V  +  + 
Sbjct: 105 HSNYVFCCNFNPQSNL------IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 158
Query: 286 DTTVASTSGSD--VYIWDTNSG-CLLTVVN 312
           D ++  +S  D    IWDT SG CL T+++
Sbjct: 159 DGSLIVSSSYDGLCRIWDTASGQCLKTLID 188

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 107/240 (44%), Gaps = 31/240 (12%)
Query: 240 ITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTSGSD-- 296
           +  L  D  +I SG  D T+++WD+  L+C ++L  H+  V  L  +D  V  T  SD  
Sbjct: 136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ-YDERVIITGSSDST 194
Query: 297 VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL 356
           V +WD N+G +L  +   H        R + G  + T  +D +I ++++    +  ++ L
Sbjct: 195 VRVWDVNTGEMLNTL--IHHCEAVLHLRFNNG-MMVTCSKDRSIAVWDM---ASPTDITL 248
Query: 357 VATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLID------VRKL-----------LRSGR 399
               + H   VN + F+  ++VSA+GD  + + +      VR L            R   
Sbjct: 249 RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL 308
Query: 400 PTSGKRVSRV----IEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE 455
             SG   + +    IE     R+L G E  +  +     RIV G  +G +++W+   A +
Sbjct: 309 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALD 368

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 40  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 100 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 143
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 305
           I SGS+D +VR+WD    KCLK L  HSD V  +    D ++  +S  D    IWDT SG
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 203
Query: 306 -CLLTVVN 312
            CL T+++
Sbjct: 204 QCLKTLID 211

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 42  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 102 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 145
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 305
           I SGS+D +VR+WD    KCLK L  HSD V  +    D ++  +S  D    IWDT SG
Sbjct: 146 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 205
Query: 306 -CLLTVVN 312
            CL T+++
Sbjct: 206 QCLKTLID 213

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 84  NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 127
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAPH-DTTVASTSGSD--VYIWDTNSG 305
           I SGS+D +VR+WD    KCLK L  HSD V  +  + D ++  +S  D    IWDT SG
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 306 -CLLTVVN 312
            CL T+++
Sbjct: 188 QCLKTLID 195

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 81  NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 124
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAPH-DTTVASTSGSD--VYIWDTNSG 305
           I SGS+D +VR+WD    KCLK L  HSD V  +  + D ++  +S  D    IWDT SG
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 306 -CLLTVVN 312
            CL T+++
Sbjct: 185 QCLKTLID 192

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 84  NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 127
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAPH-DTTVASTSGSD--VYIWDTNSG 305
           I SGS+D +VR+WD    KCLK L  HSD V  +  + D ++  +S  D    IWDT SG
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 306 -CLLTVVN 312
            CL T+++
Sbjct: 188 QCLKTLID 195

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 35  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 95  NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 138
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 305
           I SGS+D +VR+WD    KCLK L  HSD V  +    D ++  +S  D    IWDT SG
Sbjct: 139 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 198
Query: 306 -CLLTVVN 312
            CL T+++
Sbjct: 199 QCLKTLID 206

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 23  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 83  NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 126
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAPH-DTTVASTSGSD--VYIWDTNSG 305
           I SGS+D +VR+WD    KCLK L  HSD V  +  + D ++  +S  D    IWDT SG
Sbjct: 127 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 186
Query: 306 -CLLTVVN 312
            CL T+++
Sbjct: 187 QCLKTLID 194

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 81  NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 124
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 305
           I SGS+D +VR+WD    KCLK L  HSD V  +    D ++  +S  D    IWDT SG
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 306 -CLLTVVN 312
            CL T+++
Sbjct: 185 QCLKTLID 192

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 14  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 74  NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 117
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAPH-DTTVASTSGSD--VYIWDTNSG 305
           I SGS+D +VR+WD    KCLK L  HSD V  +  + D ++  +S  D    IWDT SG
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 177
Query: 306 -CLLTVVN 312
            CL T+++
Sbjct: 178 QCLKTLID 185

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 84  NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 127
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAPH-DTTVASTSGSD--VYIWDTNSG 305
           I SGS+D +VR+WD    KCLK L  HSD V  +  + D ++  +S  D    IWDT SG
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 306 -CLLTVVN 312
            CL T+++
Sbjct: 188 QCLKTLID 195

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 78  NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 121
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 305
           I SGS+D +VR+WD    KCLK L  HSD V  +    D ++  +S  D    IWDT SG
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 306 -CLLTVVN 312
            CL T+++
Sbjct: 182 QCLKTLID 189

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 78  NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 121
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 305
           I SGS+D +VR+WD    KCLK L  HSD V  +    D ++  +S  D    IWDT SG
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 306 -CLLTVVN 312
            CL T+++
Sbjct: 182 QCLKTLID 189

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 19  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 79  NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 122
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 305
           I SGS+D +VR+WD    KCLK L  HSD V  +    D ++  +S  D    IWDT SG
Sbjct: 123 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 182
Query: 306 -CLLTVVN 312
            CL T+++
Sbjct: 183 QCLKTLID 190

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
            L GHT+AV +V    + + L  S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 81  NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 124
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAPH-DTTVASTSGSD--VYIWDTNSG 305
           I SGS+D +VR+WD    KCLK L  HSD V  +  + D ++  +S  D    IWDT SG
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 306 -CLLTVVN 312
            CL T+++
Sbjct: 185 QCLKTLID 192

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 28/191 (14%)
Query: 134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVA 191
           L+  L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A +
Sbjct: 18  LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 192 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALD 246
           +D  LLV+   D  +  W          D+S  +     K ++ +    +  P ++L   
Sbjct: 78  SDSNLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL--- 124
Query: 247 LTRIYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAPH-DTTVASTSGSD--VYIWDT 302
              I SGS+D +VR+WD     CLK L  HSD V  +  + D ++  +S  D    IWDT
Sbjct: 125 ---IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 303 NSG-CLLTVVN 312
            SG CL T+++
Sbjct: 182 ASGQCLKTLID 192

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 28/191 (14%)
Query: 134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVA 191
           L+  L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A +
Sbjct: 18  LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 192 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALD 246
           +D  LLV+   D  +  W          D+S  +     K ++ +    +  P ++L   
Sbjct: 78  SDSNLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL--- 124
Query: 247 LTRIYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAPH-DTTVASTSGSD--VYIWDT 302
              I SGS+D +VR+WD     CLK L  HSD V  +  + D ++  +S  D    IWDT
Sbjct: 125 ---IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 303 NSG-CLLTVVN 312
            SG CL T+++
Sbjct: 182 ASGQCLKTLID 192

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 116/276 (42%), Gaps = 47/276 (17%)
Query: 113 GLPIASAPLGAGFSDDKSWK------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIV 166
           G  IASA      SDDK+ K      +L+  L GH+ +V  V      + + ++  D  V
Sbjct: 274 GQTIASA------SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 327
Query: 167 RMW-----HLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCW-RAVEVLPHLFD 220
           ++W     HL+   +  SS   G    A + D + + +   D  +  W R  ++L  L  
Sbjct: 328 KLWNRNGQHLQT-LTGHSSSVWGV---AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG 383
Query: 221 ISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDR--ALLKCLKVLRHSDW 278
            S S +               + + D   I S S D TV++W+R   LL+ L     S W
Sbjct: 384 HSSSVRG-------------VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW 430
Query: 279 VYGLAPHDTTVASTSGSD-VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED 337
               +P D T+AS S    V +W+ N G LL  + G H  + + +A S  G  + +  +D
Sbjct: 431 GVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTG-HSSSVRGVAFSPDGQTIASASDD 488
Query: 338 GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE 373
             + ++         N  L+ T   H+  V  +AF 
Sbjct: 489 KTVKLW-------NRNGQLLQTLTGHSSSVRGVAFS 517

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 96/237 (40%), Gaps = 36/237 (15%)
Query: 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV-- 190
           E I  ++GH   V +V ++ +   + ++  D  ++MW ++ G+ + +       +R V  
Sbjct: 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 242
Query: 191 AADKKLLVAGGTDGFIHCW---------------RAVEVL---PHLFDISGSEKQNTQFR 232
             D  L+ +   D  +  W                 VE +   P     S SE   ++ +
Sbjct: 243 NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 302
Query: 233 LWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAPHDTTVAS 291
                GP          + SGS D T+++WD +   CL  L  H +WV G+  H      
Sbjct: 303 KSGKPGPF---------LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFI 353
Query: 292 TSGSD---VYIWD-TNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE 344
            S +D   + +WD  N  C+ T+   AH     SL    T  ++ TG  D  + ++E
Sbjct: 354 LSCADDKTLRVWDYKNKRCMKTL--NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 28/230 (12%)
Query: 132 KELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV- 190
           K+ +  L GH   V  +   A   +L +   D  VR+W ++ G      +    T+R + 
Sbjct: 152 KKFLLQLSGHDGGVWAL-KYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 210
Query: 191 ---AADKKLLVAGGTDGFIHCWRAVEV-----------LPHLFDISGSEKQNTQFR--LW 234
                + K +V G  D  +H W+  +             P +F    + ++N  F   L 
Sbjct: 211 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH---TPEENPYFVGVLR 267
Query: 235 EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYG-LAPHDTT--VA 290
            H   + +++     + SGS+D T+ VWD A +KCL +L  H+D +Y  +  H+    ++
Sbjct: 268 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS 327
Query: 291 STSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI 340
           ++  + + IWD  +G L+  + G H      L  S    FL +   DG+I
Sbjct: 328 ASMDTTIRIWDLENGELMYTLQG-HTALVGLLRLS--DKFLVSAAADGSI 374

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 99/230 (43%), Gaps = 28/230 (12%)
Query: 132 KELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV- 190
           K+ +  L GH   V  +   A   +L +   D  VR+W ++ G      +    T+R + 
Sbjct: 152 KKFLLQLSGHDGGVWAL-KYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 210
Query: 191 ---AADKKLLVAGGTDGFIHCWRAVEV-----------LPHLFDISGSEKQNTQFR--LW 234
                + K +V G  D  +H W+  +             P +F    + ++N  F   L 
Sbjct: 211 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH---TPEENPYFVGVLR 267
Query: 235 EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYG-LAPHDTT--VA 290
            H   + +++     + SGS+D T+ VWD A  KCL +L  H+D +Y  +  H+    ++
Sbjct: 268 GHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCIS 327
Query: 291 STSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI 340
           ++  + + IWD  +G L   + G H      L  S    FL +   DG+I
Sbjct: 328 ASXDTTIRIWDLENGELXYTLQG-HTALVGLLRLS--DKFLVSAAADGSI 374

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 18/180 (10%)
Query: 138 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR----AVAAD 193
           L GH+  V  V +  +     ++ +D  +R+W+L++G      K LG T      A + D
Sbjct: 63  LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNG--QCQYKFLGHTKDVLSVAFSPD 120
Query: 194 KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSG 253
            + +V+GG D  +  W       H           +  R         S +LD   I SG
Sbjct: 121 NRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRF--------SPSLDAPVIVSG 172
Query: 254 SWDMTVRVWDRALLKCLKVLR-HSDWVYG--LAPHDTTVASTSGSDVY-IWDTNSGCLLT 309
            WD  V+VWD A  + +  L+ H+++V    ++P  +  AS+    V  +WD   G  L+
Sbjct: 173 GWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALS 232

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/343 (20%), Positives = 136/343 (39%), Gaps = 47/343 (13%)
Query: 134 LIDVLYGHTEAVLTVFV-LASAKLLFTSGYDSIVRMWHL---EDGFSIASSKPLG----C 185
           L   +  HT+ V  +   + +A ++ ++  D  + +W L   +  + +A  +  G     
Sbjct: 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFV 433
Query: 186 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA- 244
               +++D +  ++G  DG +  W          D++         R   H   + S+A 
Sbjct: 434 EDVVLSSDGQFALSGSWDGELRLW----------DLAAGVSTR---RFVGHTKDVLSVAF 480
Query: 245 -LDLTRIYSGSWDMTVRVWDRALLKCLKVLR-----HSDWV--YGLAPHD---TTVASTS 293
            LD  +I S S D T+++W+  L +C   +      H DWV     +P+    T V+++ 
Sbjct: 481 SLDNRQIVSASRDRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW 539
Query: 294 GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN 353
              V +W+  S C L      H G   ++A S  G    +GG+DG + ++    D  E  
Sbjct: 540 DKTVKVWNL-SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW----DLAEGK 594
Query: 354 VLLVATWIPHTGPVNSLAFEFP---WLVSAAGDG-KLSLIDVRKLLRSGRPTSGKRVSRV 409
            L     +     +++L F  P   WL +A   G K+  ++ + ++   +        + 
Sbjct: 595 KLYS---LEANSVIHALCFS-PNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKA 650
Query: 410 IEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQ 452
               P         C  L+       +  G  +G++R+W   +
Sbjct: 651 DNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 78/189 (41%), Gaps = 27/189 (14%)
Query: 173 DGFSIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQ 230
           +  + +SS      IR+V  + D K L  G  D  I  W          DI   E +   
Sbjct: 112 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIW----------DI---ENRKIV 158
Query: 231 FRLWEHEGPITSLALDLT--RIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHD 286
             L  HE  I SL    +  ++ SGS D TVR+WD    +C   L   D V  +A  P D
Sbjct: 159 MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218
Query: 287 TTVASTSGSD--VYIWDTNSGCLLTVVNG------AHVGNTKSLARSHTGDFLFTGGEDG 338
               +    D  V +WD+ +G L+  ++        H  +  S+  +  G  + +G  D 
Sbjct: 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 278
Query: 339 AIHMYEIIN 347
           ++ ++ + N
Sbjct: 279 SVKLWNLQN 287

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 26/160 (16%)
Query: 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED---GFSIASSKPLGCTIRA 189
           +L   L GH + V  V  +  +K+   S  D  VR+W  +D   G  + + +    ++  
Sbjct: 9   QLSATLKGHDQDVRDVVAVDDSKVASVS-RDGTVRLWSKDDQWLGTVVYTGQGFLNSV-C 66
Query: 190 VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTR 249
             ++K+LL+ GG D  I+       +P LF  SG   ++  + L  H+G + SL+     
Sbjct: 67  YDSEKELLLFGGKDTXING------VP-LFATSG---EDPLYTLIGHQGNVCSLSFQDGV 116
Query: 250 IYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTV 289
           + SGSWD T +VW    L           VY L  H+ +V
Sbjct: 117 VISGSWDKTAKVWKEGSL-----------VYNLQAHNASV 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	520
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.98
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.98
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.88
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.87
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.86
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.85
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.85
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.84
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.84
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.83
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.83
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.82
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.81
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.81
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.8
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.8
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.8
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.79
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.79
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.79
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.78
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.78
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.77
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.75
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.75
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.75
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.75
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.74
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.73
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.71
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.69
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.69
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.68
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.66
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.66
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.66
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.65
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.65
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.65
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.65
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.63
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.6
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.55
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.54
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.54
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.54
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.53
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.52
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.51
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.51
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.51
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.5
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.5
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.5
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.49
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.48
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.48
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.48
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.47
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.46
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.45
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.45
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.44
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.4
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.4
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.39
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.35
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.35
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.33
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.33
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.32
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.32
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.32
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.32
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.3
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.29
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.26
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.25
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.24
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.24
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.24
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.2
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.18
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.17
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.15
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.15
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.15
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.13
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.12
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.1
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.05
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.04
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.03
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.99
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.96
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.96
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.93
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.93
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.93
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.92
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.9
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.88
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.87
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.86
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.85
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.84
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.82
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.82
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.79
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.78
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.78
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.74
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.73
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.7
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.7
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.66
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.64
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.59
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.58
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.57
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.56
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.56
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.54
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.53
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.5
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.47
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.46
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.41
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.4
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.4
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.36
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.35
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.34
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.33
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.3
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.28
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.28
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.22
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.12
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.97
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.84
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.82
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.77
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.74
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.74
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.74
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.73
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.72
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.72
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.71
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.7
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.66
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.65
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.63
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.62
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.55
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.47
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.44
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.43
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.43
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.4
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.4
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.38
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.36
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.3
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.28
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.26
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.22
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.11
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.09
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.08
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.06
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.04
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.99
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.97
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.91
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.9
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.9
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.88
3ott_A	758	Two-component system sensor histidine kinase; beta	96.86
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.84
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.79
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.7
3ott_A	758	Two-component system sensor histidine kinase; beta	96.67
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	96.61
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.57
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.56
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.54
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.53
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.51
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.33
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.33
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.24
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.08
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.02
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.98
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.81
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.76
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.73
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.56
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	95.51
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.37
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.2
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	94.91
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	94.83
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	94.65
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.18
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	94.09
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.08
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	93.54
3kya_A	496	Putative phosphatase; structural genomics, joint c	93.07
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.06
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	92.3
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	92.07
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	91.03
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	89.0
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	88.27
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	81.82
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	80.91
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	80.37

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=5.8e-52  Score=414.59  Aligned_cols=395  Identities=20%  Similarity=0.278  Sum_probs=329.9

Q ss_pred             ccccCcccccccCCCHHHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhhhhhhhcCC-CCCC--CCCCCCCCCccc
Q 009993           54 DVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGL-PIAS--APLGAGFSDDKS  130 (520)
Q Consensus        54 ~~~~~~~~~~~~~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~~~~~~~~~-~~~~--~~~~~~~~~~~~  130 (520)
                      .+.|.+++|++..||.|++.+||+||++.+|+++++|||+|+.+++++.+|+.++....-. |...  ............
T Consensus         9 ~~~~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (445)
T 2ovr_B            9 VIEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSP   88 (445)
T ss_dssp             HHCCCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCH
T ss_pred             hcCccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCc
Confidence            4567788999999999999999999999999999999999999999999999976443211 1100  000000112234


Q ss_pred             HHH------------------hhhhhccccccE-EEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe
Q 009993          131 WKE------------------LIDVLYGHTEAV-LTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA  191 (520)
Q Consensus       131 W~~------------------~~~~l~~h~~~V-~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~  191 (520)
                      |+.                  ..+.+.+|.+.| +++  .+++++|++|+.||+|++||+.+++.+..+.+|...|.++.
T Consensus        89 wk~~~~~~~~~~~~w~~~~~~~~~~l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~  166 (445)
T 2ovr_B           89 WKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ  166 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCCCEEEECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEE
T ss_pred             HHHHHhhhhhhhhcccCCCcceeEEecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence            552                  245688999875 555  45689999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEE
Q 009993          192 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLK  271 (520)
Q Consensus       192 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~  271 (520)
                      .+++.+++|+.||.|++||+.++.             ....+.+|...|.++.++++.+++|+.||+|++||+.+++.+.
T Consensus       167 ~~~~~l~s~~~dg~i~vwd~~~~~-------------~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~  233 (445)
T 2ovr_B          167 MRDNIIISGSTDRTLKVWNAETGE-------------CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLH  233 (445)
T ss_dssp             EETTEEEEEETTSCEEEEETTTTE-------------EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEE
T ss_pred             ecCCEEEEEeCCCeEEEEECCcCc-------------EEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEE
Confidence            889999999999999999997763             4567789999999999999999999999999999999999998


Q ss_pred             Eee-eccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCc
Q 009993          272 VLR-HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC  349 (520)
Q Consensus       272 ~~~-~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~  349 (520)
                      .+. |...|.++..++..+++++ |+.|++||+++++.+..+. +|...|.+++|  ++.++++|+.||.|++||++++ 
T Consensus       234 ~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-  309 (445)
T 2ovr_B          234 VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG-  309 (445)
T ss_dssp             EEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEEC-CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC-
T ss_pred             EEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEec-CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC-
Confidence            887 8999999999999999998 9999999999999998887 69999999999  7899999999999999999998 


Q ss_pred             cccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCccccc---Ccceee
Q 009993          350 TEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH---GFECNL  426 (520)
Q Consensus       350 ~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v  426 (520)
                           ..+..+.+|...+.++.+++++|++|+.||.|++||++++.                   ....+.   .|...|
T Consensus       310 -----~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------------------~~~~~~~~~~~~~~v  365 (445)
T 2ovr_B          310 -----NCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ-------------------CLQTLQGPNKHQSAV  365 (445)
T ss_dssp             -----CEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCC-------------------EEEEECSTTSCSSCE
T ss_pred             -----CEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCc-------------------EEEEEccCCCCCCCE
Confidence                 67888899999999999999999999999999999998742                   122222   377889


Q ss_pred             EEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccccccc
Q 009993          427 LSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAK  496 (520)
Q Consensus       427 ~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~~~  496 (520)
                      .++.+++++|++|+.||.|++||+.+++.+......     ........+..++|+|+|..+++++.+..
T Consensus       366 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~~~~la~~~~dg~  430 (445)
T 2ovr_B          366 TCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTL-----ESGGSGGVVWRIRASNTKLVCAVGSRNGT  430 (445)
T ss_dssp             EEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEEC-----TTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred             EEEEECCCEEEEEeCCCeEEEEECCCCceeeeeecc-----ccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence            999999999999999999999999987654332110     01233445788999999999988876543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=6.8e-51  Score=405.45  Aligned_cols=369  Identities=20%  Similarity=0.286  Sum_probs=302.2

Q ss_pred             cccCcccccccCCCHH----HHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhhhhhhhcCCCC--------------
Q 009993           55 VLSNLHRSTITDLPPA----LISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPI--------------  116 (520)
Q Consensus        55 ~~~~~~~~~~~~LP~e----l~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~~~~~~~~~~~--------------  116 (520)
                      +.|.+++||+..||.|    ++.+||+|||+.+|+++++|||+|+.+++++.+|+.+|...+....              
T Consensus         2 ~~~~~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~   81 (435)
T 1p22_A            2 PAIMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQY   81 (435)
T ss_dssp             CCCCSCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGG
T ss_pred             CChhhhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhh
Confidence            4678999999999999    9999999999999999999999999999999999998766542100              


Q ss_pred             --CCCCCCCCCCCc------------------ccHHHh------hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEE
Q 009993          117 --ASAPLGAGFSDD------------------KSWKEL------IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWH  170 (520)
Q Consensus       117 --~~~~~~~~~~~~------------------~~W~~~------~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd  170 (520)
                        ...+........                  +.|+.-      +....+|...|+|+++  ++++|++|+.||+|++||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd  159 (435)
T 1p22_A           82 LFKNKPPDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWD  159 (435)
T ss_dssp             CC---------CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEE
T ss_pred             hhccCCCCCCCCchhhHHhhhhhhhcchhHHHhhhccCCccceEEecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEe
Confidence              000000000111                  112110      1122356778999877  799999999999999999


Q ss_pred             CCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEE
Q 009993          171 LEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRI  250 (520)
Q Consensus       171 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l  250 (520)
                      +.+++.+..+.+|...|.++..+++.|++|+.||.|++||+.++.             ....+.+|...|.+++++++.+
T Consensus       160 ~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~-------------~~~~~~~h~~~v~~l~~~~~~l  226 (435)
T 1p22_A          160 KNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGE-------------MLNTLIHHCEAVLHLRFNNGMM  226 (435)
T ss_dssp             SSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCC-------------EEEEECCCCSCEEEEECCTTEE
T ss_pred             CCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCc-------------EEEEEcCCCCcEEEEEEcCCEE
Confidence            999999999999999999999999999999999999999998763             4567788999999999999999


Q ss_pred             EEEecCCeEEEEECCCCcEE---EEee-eccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEec
Q 009993          251 YSGSWDMTVRVWDRALLKCL---KVLR-HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARS  325 (520)
Q Consensus       251 ~s~s~dg~v~iwd~~~~~~~---~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s  325 (520)
                      ++|+.||+|++||+.+++..   ..+. |...|.++..+++++++++ |+.|++||+++++.+..+. +|...|.++.+ 
T Consensus       227 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~-  304 (435)
T 1p22_A          227 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIACLQY-  304 (435)
T ss_dssp             EEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEE-
T ss_pred             EEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEc-CCCCcEEEEEe-
Confidence            99999999999999988765   3333 8899999999999999999 9999999999999999887 69999999999 


Q ss_pred             CCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCc
Q 009993          326 HTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKR  405 (520)
Q Consensus       326 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  405 (520)
                       ++.++++|+.||.|++||++++      .++..+.+|...|++++|++.+|++|+.||.|++||+.+.........   
T Consensus       305 -~~~~l~~g~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---  374 (435)
T 1p22_A          305 -RDRLVVSGSSDNTIRLWDIECG------ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG---  374 (435)
T ss_dssp             -ETTEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTT---
T ss_pred             -CCCEEEEEeCCCeEEEEECCCC------CEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCcccccc---
Confidence             4789999999999999999998      778889999999999999999999999999999999987542211110   


Q ss_pred             eeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHH
Q 009993          406 VSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIE  457 (520)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~  457 (520)
                             ......+.+|...|.++.+++.+|++|+.||.|++||+.++....
T Consensus       375 -------~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~~~~  419 (435)
T 1p22_A          375 -------TLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAQ  419 (435)
T ss_dssp             -------TTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC--------
T ss_pred             -------chheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCCCcc
Confidence                   113445678888999999999999999999999999998775543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=8.3e-51  Score=408.55  Aligned_cols=388  Identities=21%  Similarity=0.254  Sum_probs=311.0

Q ss_pred             cccccCcccccccCCCHHHHHHHccCCChhhhHHHhhhhhhHHHhhcC-cchhhhhhhhhcCCCCCCC-----------C
Q 009993           53 NDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASD-HHAWKEFYCERWGLPIASA-----------P  120 (520)
Q Consensus        53 ~~~~~~~~~~~~~~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~-~~lW~~~~~~~~~~~~~~~-----------~  120 (520)
                      +.+.|++++||+..||.|++.+||+|||+.+|+++++|||.|+.++.+ +.+|+.++...........           +
T Consensus         4 ~~~~~~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (464)
T 3v7d_B            4 TLIKDNLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYP   83 (464)
T ss_dssp             -----CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTTSCCTTTHHHHHHHHHHHCT
T ss_pred             cccCcccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccccchhhhhhhhhccCC
Confidence            356789999999999999999999999999999999999999999998 7999987643322111100           0


Q ss_pred             CCCCC-----------CCcccHH-----HhhhhhccccccE-EEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCC
Q 009993          121 LGAGF-----------SDDKSWK-----ELIDVLYGHTEAV-LTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPL  183 (520)
Q Consensus       121 ~~~~~-----------~~~~~W~-----~~~~~l~~h~~~V-~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~  183 (520)
                      .....           ...+.|.     ....++.+|.+.| .++.+  ++++|++|+.||+|++||+.+++.+..+.+|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h  161 (464)
T 3v7d_B           84 KLSQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGH  161 (464)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             CcccchhhHHHHHHhhhhHhhhcCCCcCcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCC
Confidence            00000           0012332     1245788999885 66666  5789999999999999999999999999999


Q ss_pred             CceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE----cCCEEEEEecCC
Q 009993          184 GCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWDM  257 (520)
Q Consensus       184 ~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg  257 (520)
                      ...|.++.  +++ .+++|+.||+|++||+.++.             ....+.+|...|.++++    ++.++++|+.||
T Consensus       162 ~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~-------------~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~  227 (464)
T 3v7d_B          162 DGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC-------------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN  227 (464)
T ss_dssp             SSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE-------------EEEEECCCSSCEEEEEEEESSSCEEEEEEETTS
T ss_pred             CcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc-------------EEEEECCCCCccEEEEEecCCCCCEEEEEcCCC
Confidence            99999887  444 99999999999999997763             55677889999999999    347899999999


Q ss_pred             eEEEEECCCCcE-----------------------EEEee-eccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEee
Q 009993          258 TVRVWDRALLKC-----------------------LKVLR-HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVN  312 (520)
Q Consensus       258 ~v~iwd~~~~~~-----------------------~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~  312 (520)
                      +|++||++++..                       +..+. |...|.++.++++++++++ |+.|++||+++++.+..+.
T Consensus       228 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  307 (464)
T 3v7d_B          228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS  307 (464)
T ss_dssp             CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence            999999987653                       22333 8889999999999999999 9999999999999999887


Q ss_pred             cccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCC
Q 009993          313 GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       313 ~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~  392 (520)
                       +|...|.+++|+|+++++++|+.||.|++||++++      .++..+.+|...|.++.|++.+|++|+.||.|++||+.
T Consensus       308 -~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~------~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~  380 (464)
T 3v7d_B          308 -GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG------ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAN  380 (464)
T ss_dssp             -CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred             -CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------cEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECC
Confidence             69999999999999999999999999999999998      78889999999999999999999999999999999998


Q ss_pred             cccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhh
Q 009993          393 KLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRM  472 (520)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  472 (520)
                      +....                  ....+.+...+.++.+++.++++|+ ||.|++||+.+++.+.....         ..
T Consensus       381 ~~~~~------------------~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~---------~~  432 (464)
T 3v7d_B          381 DYSRK------------------FSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANIL---------KD  432 (464)
T ss_dssp             TCCEE------------------EEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTT---------TT
T ss_pred             CCcee------------------eeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhc---------cC
Confidence            74211                  1112345567788899999999998 89999999998866533111         12


Q ss_pred             hhccceeeeccCCCccccccc
Q 009993          473 RRRKLQTEMSSKGGRTDQCSV  493 (520)
Q Consensus       473 ~~~~~~~~~s~~g~~~~~~s~  493 (520)
                      ...+..++|+  ++++++++.
T Consensus       433 ~~~v~~v~~~--~~~l~~~~~  451 (464)
T 3v7d_B          433 ADQIWSVNFK--GKTLVAAVE  451 (464)
T ss_dssp             CSEEEEEEEE--TTEEEEEEE
T ss_pred             CCcEEEEEec--CCEEEEEEE
Confidence            3446777775  666666554

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1e-43  Score=350.32  Aligned_cols=278  Identities=22%  Similarity=0.370  Sum_probs=249.6

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV  212 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~  212 (520)
                      ...+.+|.++|++++|+|++.+|++|+.||+|+|||+.+++....+.+|...|.++.  +++++|++|+.||+|++||+.
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            456889999999999999999999999999999999999999999999999888776  889999999999999999987


Q ss_pred             cCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCC
Q 009993          213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDT  287 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~  287 (520)
                      ++.             ....+.+|...|.+++|  +++++++|+.|++|++||++++.++..+. |...|.++.  +++.
T Consensus       181 ~~~-------------~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~  247 (410)
T 1vyh_C          181 GFE-------------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT  247 (410)
T ss_dssp             SSC-------------EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred             CCc-------------eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC
Confidence            652             45567799999999999  67899999999999999999999998887 888999887  7889


Q ss_pred             EEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCC--------------------CCEEEEEeCCCeEEEEEcc
Q 009993          288 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT--------------------GDFLFTGGEDGAIHMYEII  346 (520)
Q Consensus       288 ~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~--------------------~~~l~tg~~dg~i~iwd~~  346 (520)
                      ++++++ |+.|++||+.+++....+. +|...|.+++|+|+                    +.+|++|+.|+.|++||++
T Consensus       248 ~l~s~s~D~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~  326 (410)
T 1vyh_C          248 LIASCSNDQTVRVWVVATKECKAELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS  326 (410)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred             EEEEEcCCCeEEEEECCCCceeeEec-CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence            999999 9999999999999888886 69999999999996                    6789999999999999999


Q ss_pred             cCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcce
Q 009993          347 NDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC  424 (520)
Q Consensus       347 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (520)
                      ++      .++..+.+|...|++++|+|  .+|++|+.||.|++||+.+.                   .+...+.+|..
T Consensus       327 ~~------~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-------------------~~~~~~~~h~~  381 (410)
T 1vyh_C          327 TG------MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-------------------RCMKTLNAHEH  381 (410)
T ss_dssp             TT------EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS-------------------CCCEEEECCSS
T ss_pred             CC------ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------ceEEEEcCCCC
Confidence            98      78888999999999999976  69999999999999999763                   33455677888


Q ss_pred             eeEEEEecCC--EEEEecCCCeEEEEeCC
Q 009993          425 NLLSVDIGAD--RIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       425 ~v~~~~~~~~--~l~sg~~Dg~v~iwd~~  451 (520)
                      .|.++.++++  +|++|+.||+|++|+++
T Consensus       382 ~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          382 FVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             CEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            8888887655  99999999999999863

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.4e-42  Score=330.92  Aligned_cols=280  Identities=18%  Similarity=0.285  Sum_probs=244.8

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV  212 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~  212 (520)
                      .++|++|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|...|.++.  |++++|++|+.|+.|++|++.
T Consensus        48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~  127 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK  127 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred             heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECc
Confidence            567899999999999999999999999999999999999999999999988877655  999999999999999999987


Q ss_pred             cCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCE
Q 009993          213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTT  288 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~  288 (520)
                      +...         .......+.+|.+.|.++.| +++.+++++.|++|++||+++++.+..+. |...|.++.  |++++
T Consensus       128 ~~~~---------~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~  198 (340)
T 1got_B          128 TREG---------NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL  198 (340)
T ss_dssp             TCSB---------SCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             cCCC---------cceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCE
Confidence            6521         12345567899999999999 66789999999999999999999998887 889999987  78899


Q ss_pred             EEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec--CCcC
Q 009993          289 VASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI--PHTG  365 (520)
Q Consensus       289 l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~--~h~~  365 (520)
                      +++++ |+.|++||++++..+..+. +|...|++++|+|++++|++|+.||+|++||++..      ..+..+.  .+..
T Consensus       199 l~sg~~d~~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~------~~~~~~~~~~~~~  271 (340)
T 1got_B          199 FVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNIIC  271 (340)
T ss_dssp             EEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------EEEEEECCTTCCS
T ss_pred             EEEEeCCCcEEEEECCCCeeEEEEc-CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC------cEEEEEccCCccc
Confidence            99999 9999999999999988887 69999999999999999999999999999999987      3444443  3445


Q ss_pred             CEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEEecC
Q 009993          366 PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGE  441 (520)
Q Consensus       366 ~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~  441 (520)
                      .|++++|+|  .+|++|+.||.|++||+.+.                   .....+.+|...|.++.++++  +|++|+.
T Consensus       272 ~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~  332 (340)
T 1got_B          272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKA-------------------DRAGVLAGHDNRVSCLGVTDDGMAVATGSW  332 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTC-------------------CEEEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred             ceEEEEECCCCCEEEEECCCCeEEEEEcccC-------------------cEeeEeecCCCcEEEEEEcCCCCEEEEEcC
Confidence            899999976  69999999999999999873                   233456788888888877654  9999999


Q ss_pred             CCeEEEEe
Q 009993          442 EGIVRIWN  449 (520)
Q Consensus       442 Dg~v~iwd  449 (520)
                      ||+|+|||
T Consensus       333 D~~i~iWd  340 (340)
T 1got_B          333 DSFLKIWN  340 (340)
T ss_dssp             TSCEEEEC
T ss_pred             CccEEecC
Confidence            99999997

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.6e-42  Score=326.85  Aligned_cols=280  Identities=20%  Similarity=0.250  Sum_probs=244.0

Q ss_pred             HhhhhhccccccEEEEEEccC----CCEEEEEeCCCeEEEEECCCCcE--EEEeCCCCceEEEEe--cCCCEEEEEeCCC
Q 009993          133 ELIDVLYGHTEAVLTVFVLAS----AKLLFTSGYDSIVRMWHLEDGFS--IASSKPLGCTIRAVA--ADKKLLVAGGTDG  204 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~----~~~l~sgs~dg~v~vwd~~~~~~--~~~~~~~~~~v~~~~--~~~~~l~sg~~dg  204 (520)
                      .+.+.+++|.+.|++++|+|+    +.+|+||+.|++|+||++.++..  ...+.+|...|.++.  +++..+++|+.|+
T Consensus        23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~  102 (321)
T 3ow8_A           23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA  102 (321)
T ss_dssp             EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence            345677899999999999874    67999999999999999987754  456889999888776  8889999999999


Q ss_pred             cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEE
Q 009993          205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYG  281 (520)
Q Consensus       205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~  281 (520)
                      +|++||+.++.             ....+..|...+.+++|  ++++|++|+.||.|++||+++++....+. +...|.+
T Consensus       103 ~i~lWd~~~~~-------------~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~  169 (321)
T 3ow8_A          103 HIRLWDLENGK-------------QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILS  169 (321)
T ss_dssp             EEEEEETTTTE-------------EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEE
T ss_pred             cEEEEECCCCC-------------EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEE
Confidence            99999997763             45566778888999999  77899999999999999999999888876 7778888


Q ss_pred             Ee--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeee
Q 009993          282 LA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA  358 (520)
Q Consensus       282 ~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~  358 (520)
                      ++  |++++|++++ |+.|++||+++++.+..+. +|..+|++++|+|++++|++|+.||.|++||+++.      ....
T Consensus       170 ~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~------~~~~  242 (321)
T 3ow8_A          170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE-GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA------NLAG  242 (321)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC------CEEE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc------ceeE
Confidence            77  8999999999 9999999999999998887 69999999999999999999999999999999988      6778


Q ss_pred             eecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC--C
Q 009993          359 TWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--D  434 (520)
Q Consensus       359 ~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~  434 (520)
                      .+.+|...|.+++|+|  .+|++|+.|++|++||+++.                   .+...+.+|...|.++.+++  .
T Consensus       243 ~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~-------------------~~~~~~~~h~~~v~~v~~s~~g~  303 (321)
T 3ow8_A          243 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR-------------------TCVHTFFDHQDQVWGVKYNGNGS  303 (321)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------------------EEEEEECCCSSCEEEEEECTTSS
T ss_pred             EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-------------------EEEEEEcCCCCcEEEEEECCCCC
Confidence            8999999999999976  69999999999999999873                   23344567888888887765  4


Q ss_pred             EEEEecCCCeEEEEeCC
Q 009993          435 RIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       435 ~l~sg~~Dg~v~iwd~~  451 (520)
                      +|++++.||.|++||..
T Consensus       304 ~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          304 KIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEEEETTCCEEEEECC
T ss_pred             EEEEEeCCCeEEEEeCC
Confidence            99999999999999974

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.3e-42  Score=323.69  Aligned_cols=280  Identities=19%  Similarity=0.253  Sum_probs=239.7

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcc
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAV  212 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~  212 (520)
                      .++|.+|.+.|++++|+|++++|++|+.||+|++||+.++..+..+..|..++.++  .+++++|++|+.|++|++||+.
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~   85 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN   85 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred             EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence            56789999999999999999999999999999999999999999999998887765  4999999999999999999998


Q ss_pred             cCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcE-EEEee-eccCEEEEe--e-C
Q 009993          213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKC-LKVLR-HSDWVYGLA--P-H  285 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~-~~~~v~~~~--~-~  285 (520)
                      ++.             ....+.+|...|.+++|  ++.+|++|+.|++|++||++++.. ...+. |...|.++.  | +
T Consensus        86 ~~~-------------~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~  152 (304)
T 2ynn_A           86 TGE-------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD  152 (304)
T ss_dssp             TCC-------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTC
T ss_pred             CCc-------------EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCC
Confidence            763             55678899999999999  668999999999999999998744 44554 899999988  4 5


Q ss_pred             CCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecC--CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecC
Q 009993          286 DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH--TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP  362 (520)
Q Consensus       286 ~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  362 (520)
                      +..+++++ |++|++||++++.....+..+|...+..+.|+|  ++.+|++|+.|++|++||++++      .++.++.+
T Consensus       153 ~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~------~~~~~~~~  226 (304)
T 2ynn_A          153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK------SCVATLEG  226 (304)
T ss_dssp             TTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT------EEEEEEEC
T ss_pred             CCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC------ccceeeCC
Confidence            67899988 999999999998887777767778899999987  6789999999999999999998      78889999


Q ss_pred             CcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC----EE
Q 009993          363 HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD----RI  436 (520)
Q Consensus       363 h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~l  436 (520)
                      |...|++++|+|  ++|++|+.||+|++||+.+.                   .....+..|...+.++.+.+.    ++
T Consensus       227 h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (304)
T 2ynn_A          227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-------------------KVEKTLNVGLERSWCIATHPTGRKNYI  287 (304)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-------------------CEEEEECCSSSSEEEEEECTTCGGGCE
T ss_pred             CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC-------------------ceeeeccCCCccEEEEEECCCCCceEE
Confidence            999999999987  58999999999999999873                   333445566667777765442    57


Q ss_pred             EEecCCCeEEEEeCCch
Q 009993          437 VCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       437 ~sg~~Dg~v~iwd~~~~  453 (520)
                      ++|+.|| +.+|++.+.
T Consensus       288 asg~~~g-~~~~~~~~~  303 (304)
T 2ynn_A          288 ASGFDNG-FTVLSLGND  303 (304)
T ss_dssp             EEEETTE-EEEEECC--
T ss_pred             EEecCCc-eEEEEeccC
Confidence            7777665 788887653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.1e-40  Score=321.86  Aligned_cols=284  Identities=19%  Similarity=0.252  Sum_probs=240.9

Q ss_pred             HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEE--EecCCCEEEEEeCCCcEEEEE
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRA--VAADKKLLVAGGTDGFIHCWR  210 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~vwd  210 (520)
                      ...++|+||.+.|++++|+|++++|+||+.||+|++||..+++....+..|...|.+  ++|++..+++|+.|+.+++|+
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            346789999999999999999999999999999999999999988888877766655  459999999999999999999


Q ss_pred             cccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--e-
Q 009993          211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--P-  284 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~-  284 (520)
                      +......       ........+.+|...|.+++|  ++..|++++.|++|++||+++++++..+. |...|.++.  + 
T Consensus       135 ~~~~~~~-------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~  207 (354)
T 2pbi_B          135 LTFDKNE-------NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS  207 (354)
T ss_dssp             CCCCTTC-------CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCC
T ss_pred             Eeccccc-------cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeC
Confidence            8654210       112345567789999999999  66799999999999999999999999887 888898876  3 


Q ss_pred             -CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecC
Q 009993          285 -HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP  362 (520)
Q Consensus       285 -~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  362 (520)
                       +++++++++ |+.|++||+++++++..+. +|...|++++|+|++.+|++|+.|++|++||++..      ..+..+..
T Consensus       208 ~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~------~~~~~~~~  280 (354)
T 2pbi_B          208 ETGNTFVSGGCDKKAMVWDMRSGQCVQAFE-THESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD------REVAIYSK  280 (354)
T ss_dssp             SSCCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------EEEEEECC
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC------cEEEEEcC
Confidence             568999998 9999999999999998886 69999999999999999999999999999999887      34444433


Q ss_pred             --CcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC--CEE
Q 009993          363 --HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRI  436 (520)
Q Consensus       363 --h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l  436 (520)
                        +...+++++|+|  .+|++|+.|+.|++||+.++                   .....+.+|...|.++.+++  .+|
T Consensus       281 ~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-------------------~~~~~l~~h~~~v~~l~~spdg~~l  341 (354)
T 2pbi_B          281 ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG-------------------SRVSILFGHENRVSTLRVSPDGTAF  341 (354)
T ss_dssp             TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-------------------SEEEEECCCSSCEEEEEECTTSSCE
T ss_pred             CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC-------------------ceEEEEECCCCcEEEEEECCCCCEE
Confidence              345789999975  79999999999999999773                   22344567888887777655  499


Q ss_pred             EEecCCCeEEEEe
Q 009993          437 VCGGEEGIVRIWN  449 (520)
Q Consensus       437 ~sg~~Dg~v~iwd  449 (520)
                      ++|+.||+|++|+
T Consensus       342 ~sgs~D~~v~vW~  354 (354)
T 2pbi_B          342 CSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEETTSEEEEEC
T ss_pred             EEEcCCCCEEecC
Confidence            9999999999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7.8e-42  Score=333.59  Aligned_cols=293  Identities=18%  Similarity=0.228  Sum_probs=238.9

Q ss_pred             hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEE--EecCCCEEEEEeCCCcEEEEEc
Q 009993          134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRA--VAADKKLLVAGGTDGFIHCWRA  211 (520)
Q Consensus       134 ~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~vwd~  211 (520)
                      +.++|+||.+.|++++|+|++++|+||+.|++|+|||+.+++....+..|...|.+  ++|++++|++|+.|+.|++||+
T Consensus        58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~  137 (380)
T 3iz6_a           58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL  137 (380)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred             EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence            46789999999999999999999999999999999999999999999998877764  5599999999999999999998


Q ss_pred             ccCcceeeeccCCccccceEEeccCCCCeEEEEEc---CCEEEEEecCCeEEEEECCCCcEEEEee------eccCEEEE
Q 009993          212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGSWDMTVRVWDRALLKCLKVLR------HSDWVYGL  282 (520)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~v~iwd~~~~~~~~~~~------~~~~v~~~  282 (520)
                      .+....      .........+.+|.+.|.++.|.   +..|++|+.|++|++||+++++.+..+.      |...|.++
T Consensus       138 ~~~~~~------~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~  211 (380)
T 3iz6_a          138 SSQADR------DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL  211 (380)
T ss_dssp             CCCSSC------CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEE
T ss_pred             CCCccc------cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEE
Confidence            654210      01122344577999999999993   4679999999999999999999988772      77889988


Q ss_pred             e---eCCCEEEEEc-CCeEEEEECCC-CeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeee
Q 009993          283 A---PHDTTVASTS-GSDVYIWDTNS-GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV  357 (520)
Q Consensus       283 ~---~~~~~l~~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~  357 (520)
                      .   ++++++++|+ |+.|++||++. +..+..+. +|.+.|++++|+|++.+|++|+.||+|++||++++      ..+
T Consensus       212 ~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~------~~~  284 (380)
T 3iz6_a          212 SINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH-GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG------HQL  284 (380)
T ss_dssp             EECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC-CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT------EEE
T ss_pred             EeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC-CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC------cEE
Confidence            7   3788999999 99999999984 46666665 79999999999999999999999999999999988      445


Q ss_pred             eeecCC-------cCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEE
Q 009993          358 ATWIPH-------TGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLS  428 (520)
Q Consensus       358 ~~~~~h-------~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  428 (520)
                      ..+..+       ...|++++|+|  .+|++|+.||.|++||+.+.....               .......+|...|.+
T Consensus       285 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~---------------~~~~~~~~h~~~v~~  349 (380)
T 3iz6_a          285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVL---------------NLGTLQNSHEGRISC  349 (380)
T ss_dssp             EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEE---------------EECCSCSSCCCCCCE
T ss_pred             EEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEE---------------EEecccCCCCCceEE
Confidence            554433       23589999976  799999999999999987642111               001112456666666


Q ss_pred             EEe--cCCEEEEecCCCeEEEEeCCchH
Q 009993          429 VDI--GADRIVCGGEEGIVRIWNFSQAF  454 (520)
Q Consensus       429 ~~~--~~~~l~sg~~Dg~v~iwd~~~~~  454 (520)
                      +.+  ++.+|++|+.||+|++|++....
T Consensus       350 l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          350 LGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             EEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             EEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            555  55699999999999999998653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.9e-40  Score=319.39  Aligned_cols=303  Identities=19%  Similarity=0.254  Sum_probs=238.5

Q ss_pred             hhhhhccccc-cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEE---EeCCCCceEEEEe--cCCCEEEEEeCCCcEE
Q 009993          134 LIDVLYGHTE-AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA---SSKPLGCTIRAVA--ADKKLLVAGGTDGFIH  207 (520)
Q Consensus       134 ~~~~l~~h~~-~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~---~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~  207 (520)
                      ++.++.+|.+ .|++++|+|+|++|++|+.|++|+|||+.++....   ...+|...|.++.  |++++|++|+.|++|+
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~   86 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTC   86 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEE
Confidence            4667889998 99999999999999999999999999998876432   2367888887765  8999999999999999


Q ss_pred             EEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCc---EEEEee-eccCEEE
Q 009993          208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK---CLKVLR-HSDWVYG  281 (520)
Q Consensus       208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~-~~~~v~~  281 (520)
                      +||+.++.           ......+.+|...|.+++|  ++++|++|+.|++|++||++++.   ++..+. |...|.+
T Consensus        87 iw~~~~~~-----------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~  155 (345)
T 3fm0_A           87 IWKKNQDD-----------FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKH  155 (345)
T ss_dssp             EEEECCC------------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEE
T ss_pred             EEEccCCC-----------eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEE
Confidence            99986542           2345678899999999999  67899999999999999998764   344444 8888998


Q ss_pred             Ee--eCCCEEEEEc-CCeEEEEECCCCee--eEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccc----
Q 009993          282 LA--PHDTTVASTS-GSDVYIWDTNSGCL--LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA----  352 (520)
Q Consensus       282 ~~--~~~~~l~~~~-d~~i~iwd~~~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~----  352 (520)
                      +.  |++.+|++++ |+.|++||.+++..  ...+. +|...|++++|+|++++|++|+.|++|++||........    
T Consensus       156 ~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~-~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~  234 (345)
T 3fm0_A          156 VVWHPSQELLASASYDDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVAC  234 (345)
T ss_dssp             EEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCC
T ss_pred             EEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEec-CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCcccee
Confidence            87  8899999999 99999999988753  34554 799999999999999999999999999999975432211    


Q ss_pred             -----ceeeeeeecC-CcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcce
Q 009993          353 -----NVLLVATWIP-HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC  424 (520)
Q Consensus       353 -----~~~~~~~~~~-h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (520)
                           ...++..+.+ |...|++++|++  ..|++++.|+.|++|+...........     .     ........+|..
T Consensus       235 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~-----~-----~~~~~~~~~h~~  304 (345)
T 3fm0_A          235 SGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPT-----F-----SLTAHLHQAHSQ  304 (345)
T ss_dssp             C---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCC-----E-----EEEEEETTSSSS
T ss_pred             eccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceee-----E-----EEEeeecccccC
Confidence                 1233445555 889999999976  699999999999999987642211000     0     001122357888


Q ss_pred             eeEEEEecCC---EEEEecCCCeEEEEeCCchHhHHH
Q 009993          425 NLLSVDIGAD---RIVCGGEEGIVRIWNFSQAFEIER  458 (520)
Q Consensus       425 ~v~~~~~~~~---~l~sg~~Dg~v~iwd~~~~~~~~~  458 (520)
                      .|.++.|+++   +|++|+.||+|++|++.+++.+.+
T Consensus       305 ~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~  341 (345)
T 3fm0_A          305 DVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHH  341 (345)
T ss_dssp             CEEEEEECSSSTTEEEEEETTSCEEEEEECC------
T ss_pred             cEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence            8888888753   899999999999999998776544

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.1e-40  Score=343.76  Aligned_cols=352  Identities=19%  Similarity=0.236  Sum_probs=267.7

Q ss_pred             hhhhhcCCCCCCCCCCCCCC-----CcccHH--HhhhhhccccccEEEEEEccCCC-EEEEEeCCCeEEEEECCCCcEEE
Q 009993          107 FYCERWGLPIASAPLGAGFS-----DDKSWK--ELIDVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIA  178 (520)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~-----~~~~W~--~~~~~l~~h~~~V~~l~~~~~~~-~l~sgs~dg~v~vwd~~~~~~~~  178 (520)
                      +.+..|. |+.......+..     ..+.|+  +...++.+|.+.|++++|+|++. .|++|+.|++|++||..+++.+.
T Consensus       106 v~~v~fs-~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~  184 (611)
T 1nr0_A          106 VKDISWD-SESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS  184 (611)
T ss_dssp             EEEEEEC-TTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE
T ss_pred             eEEEEEC-CCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEee
Confidence            3455666 454444333322     346787  45677899999999999999987 69999999999999999999999


Q ss_pred             EeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEe-------ccCCCCeEEEEE--cC
Q 009993          179 SSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL-------WEHEGPITSLAL--DL  247 (520)
Q Consensus       179 ~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~l~~--~~  247 (520)
                      .+.+|...|.++.  |++++|++|+.|++|++||+.++..             ...+       .+|.+.|.+++|  ++
T Consensus       185 ~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~-------------~~~~~~~~~~~~~h~~~V~~v~~spdg  251 (611)
T 1nr0_A          185 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK-------------TGVFEDDSLKNVAHSGSVFGLTWSPDG  251 (611)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-------------EEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred             eeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE-------------eeeeccccccccccCCCEEEEEECCCC
Confidence            9999999888765  9999999999999999999877642             2222       279999999999  77


Q ss_pred             CEEEEEecCCeEEEEECCCCcEEEEe--------------------------------------------eeccCEEEEe
Q 009993          248 TRIYSGSWDMTVRVWDRALLKCLKVL--------------------------------------------RHSDWVYGLA  283 (520)
Q Consensus       248 ~~l~s~s~dg~v~iwd~~~~~~~~~~--------------------------------------------~~~~~v~~~~  283 (520)
                      .+|++++.|++|++||+.+++++..+                                            .|...|.+++
T Consensus       252 ~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~  331 (611)
T 1nr0_A          252 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALS  331 (611)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEE
Confidence            89999999999999999987765433                                            2667788877


Q ss_pred             --eCCCEEEEEc-CCeEEEEECCCCeeeEEeec-----------------------------------------------
Q 009993          284 --PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG-----------------------------------------------  313 (520)
Q Consensus       284 --~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~-----------------------------------------------  313 (520)
                        |++++|++++ |+.|++||+.+++....+..                                               
T Consensus       332 ~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~  411 (611)
T 1nr0_A          332 SSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLS  411 (611)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECS
T ss_pred             EeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecC
Confidence              8899999999 99999999987654322100                                               


Q ss_pred             ----------------------------------ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeee
Q 009993          314 ----------------------------------AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT  359 (520)
Q Consensus       314 ----------------------------------~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~  359 (520)
                                                        .|...+.+++|+|+|++|++|+.|++|++||+.+...    .....
T Consensus       412 ~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~----~~~~~  487 (611)
T 1nr0_A          412 SQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV----SEVKT  487 (611)
T ss_dssp             SCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE----EEEEE
T ss_pred             CCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce----eeeec
Confidence                                              0224567899999999999999999999999987621    22333


Q ss_pred             ecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC--CE
Q 009993          360 WIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DR  435 (520)
Q Consensus       360 ~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~  435 (520)
                       .+|...|++++|+|  ++|++++.|++|++||+.+.....              .  .....+|...|.+++|++  ++
T Consensus       488 -~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~--------------~--~~~~~~H~~~V~~v~fspdg~~  550 (611)
T 1nr0_A          488 -IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA--------------H--TNSWTFHTAKVACVSWSPDNVR  550 (611)
T ss_dssp             -EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES--------------C--CCCCCCCSSCEEEEEECTTSSE
T ss_pred             -cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCcee--------------e--eeeeeecccceeEEEECCCCCE
Confidence             67999999999977  699999999999999998621110              0  001234777777777655  49


Q ss_pred             EEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhh-hhccceeeeccCCCcccccccccccCCCCCCcceeeec
Q 009993          436 IVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRM-RRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHN  510 (520)
Q Consensus       436 l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~g~~~~~~s~~~~~~~~~~~~~~~~~~  510 (520)
                      |++|+.|++|++||+.++....        ......+ ...+..++|+|||. +++++.+        .+..+|..
T Consensus       551 lasgs~D~~v~lW~~~~~~~~~--------~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D--------~~i~lW~~  609 (611)
T 1nr0_A          551 LATGSLDNSVIVWNMNKPSDHP--------IIIKGAHAMSSVNSVIWLNETT-IVSAGQD--------SNIKFWNV  609 (611)
T ss_dssp             EEEEETTSCEEEEETTCTTSCC--------EEETTSSTTSCEEEEEEEETTE-EEEEETT--------SCEEEEEC
T ss_pred             EEEEECCCcEEEEECCCccccc--------chhhccCcccCeeEEEEcCCCE-EEEecCC--------CCEEEEec
Confidence            9999999999999998754210        0111223 45678999999998 8877642        22467764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=9.5e-40  Score=310.11  Aligned_cols=280  Identities=24%  Similarity=0.349  Sum_probs=243.7

Q ss_pred             hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009993          134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA  211 (520)
Q Consensus       134 ~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~  211 (520)
                      +..++.+|.+.|++++|+|++++|++|+.||.|++|++.+++....+.+|...|.++.  +++++|++|+.||.|++||+
T Consensus        15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~   94 (312)
T 4ery_A           15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV   94 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence            3567889999999999999999999999999999999999999999999998887765  89999999999999999999


Q ss_pred             ccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCC
Q 009993          212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHD  286 (520)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~  286 (520)
                      .++.             ....+.+|...|.+++|  +++++++|+.|++|++||+++++.+..+. |...|.++.  +++
T Consensus        95 ~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (312)
T 4ery_A           95 SSGK-------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG  161 (312)
T ss_dssp             TTCC-------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred             CCCc-------------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCC
Confidence            7753             45677889999999999  67899999999999999999999988887 888898887  788


Q ss_pred             CEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcC
Q 009993          287 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG  365 (520)
Q Consensus       287 ~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  365 (520)
                      .++++++ |+.|++||+++++.+..+...+...+..++|+|++++|++++.||.|++||++++      ..+..+.+|..
T Consensus       162 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~  235 (312)
T 4ery_A          162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG------KCLKTYTGHKN  235 (312)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT------EEEEEECSSCC
T ss_pred             CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC------cEEEEEEecCC
Confidence            9999998 9999999999999888876667788999999999999999999999999999988      67777888876


Q ss_pred             CEEEE--Ee---cCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEE
Q 009993          366 PVNSL--AF---EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVC  438 (520)
Q Consensus       366 ~v~~l--~~---~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s  438 (520)
                      .+.++  .+   ++.+|++|+.||.|++||+.+.                   .....+.+|...|.++.++++  ++++
T Consensus       236 ~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~~p~~~~l~s  296 (312)
T 4ery_A          236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK-------------------EIVQKLQGHTDVVISTACHPTENIIAS  296 (312)
T ss_dssp             SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred             ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc-------------------hhhhhhhccCCcEEEEeecCcCCceEE
Confidence            54332  23   2479999999999999999873                   334456788888888777654  8888


Q ss_pred             ec--CCCeEEEEeCC
Q 009993          439 GG--EEGIVRIWNFS  451 (520)
Q Consensus       439 g~--~Dg~v~iwd~~  451 (520)
                      ++  .||+|++|+.+
T Consensus       297 ~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          297 AALENDKTIKLWKSD  311 (312)
T ss_dssp             EECTTTCCEEEEECC
T ss_pred             EEccCCccEEEecCC
Confidence            86  69999999864

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.5e-40  Score=343.14  Aligned_cols=360  Identities=15%  Similarity=0.191  Sum_probs=266.3

Q ss_pred             hhcCCCCCCCCCCCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc--EEEEeCCC
Q 009993          110 ERWGLPIASAPLGAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPL  183 (520)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~--~~~~~~~~  183 (520)
                      ..|. |+............++|+    ....+|.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++  ....+.+|
T Consensus        24 ~~~s-pdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~  102 (611)
T 1nr0_A           24 LGNT-PAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF  102 (611)
T ss_dssp             CEEC-TTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECS
T ss_pred             EeeC-CCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeeccc
Confidence            3344 444333333334557786    4567789999999999999999999999999999999997543  45577888


Q ss_pred             CceEEEEe--cCCCEEEEEeCC----CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc--CC-EEEEEe
Q 009993          184 GCTIRAVA--ADKKLLVAGGTD----GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LT-RIYSGS  254 (520)
Q Consensus       184 ~~~v~~~~--~~~~~l~sg~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~s  254 (520)
                      ...|.+++  |+++.|++++.+    +.|++||..+               ....+.+|...|.+++|.  +. .|++|+
T Consensus       103 ~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~---------------~~~~l~gh~~~v~~v~f~p~~~~~l~s~s  167 (611)
T 1nr0_A          103 SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT---------------SNGNLTGQARAMNSVDFKPSRPFRIISGS  167 (611)
T ss_dssp             SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC---------------BCBCCCCCSSCEEEEEECSSSSCEEEEEE
T ss_pred             CCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC---------------CcceecCCCCCceEEEECCCCCeEEEEEe
Confidence            88887765  999999998875    4677777422               233567899999999994  33 699999


Q ss_pred             cCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeec------ccccceEEEEe
Q 009993          255 WDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG------AHVGNTKSLAR  324 (520)
Q Consensus       255 ~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~------~~~~~i~~l~~  324 (520)
                      .|++|++||..++++...+. |...|.+++  |++++|++++ |++|++||+.+++.+..+..      +|.+.|.+++|
T Consensus       168 ~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~  247 (611)
T 1nr0_A          168 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW  247 (611)
T ss_dssp             TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEE
T ss_pred             CCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEE
Confidence            99999999999998888887 999999987  8999999999 99999999999998887743      69999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcccCccccce-------------------------------------eeeeeecCCcCCE
Q 009993          325 SHTGDFLFTGGEDGAIHMYEIINDCTEANV-------------------------------------LLVATWIPHTGPV  367 (520)
Q Consensus       325 s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~-------------------------------------~~~~~~~~h~~~v  367 (520)
                      +|++++|++++.|++|++||+.++......                                     .....+.+|...|
T Consensus       248 spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v  327 (611)
T 1nr0_A          248 SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAI  327 (611)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCE
Confidence            999999999999999999999876422111                                     1234567899999


Q ss_pred             EEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCC--CCceee-------------------eee-------------
Q 009993          368 NSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTS--GKRVSR-------------------VIE-------------  411 (520)
Q Consensus       368 ~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~~~-------------------~~~-------------  411 (520)
                      ++++|+|  ++|++++.|++|++||+.++........  ...+..                   +..             
T Consensus       328 ~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~  407 (611)
T 1nr0_A          328 TALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVA  407 (611)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCE
T ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceee
Confidence            9999976  6999999999999999987543221100  000000                   000             


Q ss_pred             -----------cCCC-------------------ccc-ccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHh
Q 009993          412 -----------VEPP-------------------QRM-LHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRA  460 (520)
Q Consensus       412 -----------~~~~-------------------~~~-~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~  460 (520)
                                 +.+.                   ... .+.......++++++.+|++|+.||+|++||+.++...    
T Consensus       408 ~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~----  483 (611)
T 1nr0_A          408 NKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS----  483 (611)
T ss_dssp             EECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEE----
T ss_pred             eecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCcee----
Confidence                       0000                   000 00112234455566779999999999999999764210    


Q ss_pred             hhhcccccchhhhhccceeeeccCCCcccccccc
Q 009993          461 RALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA  494 (520)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~  494 (520)
                          .... ..+...+..++|+|||+.+++++.+
T Consensus       484 ----~~~~-~~h~~~v~~v~fspdg~~las~s~d  512 (611)
T 1nr0_A          484 ----EVKT-IVHPAEITSVAFSNNGAFLVATDQS  512 (611)
T ss_dssp             ----EEEE-EECSSCEEEEEECTTSSEEEEEETT
T ss_pred             ----eeec-cCCCCceEEEEECCCCCEEEEEcCC
Confidence                0011 2234557899999999999987743

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.4e-39  Score=309.63  Aligned_cols=285  Identities=24%  Similarity=0.385  Sum_probs=229.2

Q ss_pred             hhhhhccccccEEEEEEccCC-CEEEEEeCCCeEEEEECCC-----CcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCc
Q 009993          134 LIDVLYGHTEAVLTVFVLASA-KLLFTSGYDSIVRMWHLED-----GFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGF  205 (520)
Q Consensus       134 ~~~~l~~h~~~V~~l~~~~~~-~~l~sgs~dg~v~vwd~~~-----~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~  205 (520)
                      +..+|+||.+.|++++|+|++ ++|+||+.|++|++|++..     +.++..+.+|...|.++.  +++.+|++|+.|++
T Consensus         9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~   88 (319)
T 3frx_A            9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKT   88 (319)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCE
Confidence            356789999999999999965 8999999999999999864     345678889998887665  89999999999999


Q ss_pred             EEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEe-eeccCEEEE
Q 009993          206 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGL  282 (520)
Q Consensus       206 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~v~~~  282 (520)
                      |++||+.++.             ....+.+|...|.+++|  ++.++++|+.|++|++||++.. ++..+ .|...|.++
T Consensus        89 v~~wd~~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~~~~h~~~v~~~  154 (319)
T 3frx_A           89 LRLWDVATGE-------------TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQV  154 (319)
T ss_dssp             EEEEETTTTE-------------EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEE
T ss_pred             EEEEECCCCC-------------eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEeccCCcEEEE
Confidence            9999998763             45677899999999999  6789999999999999999754 44444 488999988


Q ss_pred             e--e------CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccc
Q 009993          283 A--P------HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN  353 (520)
Q Consensus       283 ~--~------~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~  353 (520)
                      .  |      ++..+++++ |+.|++||+++++....+. +|...|.+++|+|++++|++|+.||.|++||+.+.     
T Consensus       155 ~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~-----  228 (319)
T 3frx_A          155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK-----  228 (319)
T ss_dssp             EECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-----
T ss_pred             EEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----
Confidence            7  3      344788888 9999999999999888886 69999999999999999999999999999999988     


Q ss_pred             eeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCC-cccccCcceeeE--E
Q 009993          354 VLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPP-QRMLHGFECNLL--S  428 (520)
Q Consensus       354 ~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~--~  428 (520)
                       ..+..+..+ ..|.+++|+|  .+|++++. +.+++|++.......            .+.+. ......+...+.  +
T Consensus       229 -~~~~~~~~~-~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~------------~~~~~~~~~~~~~~~~v~~~~  293 (319)
T 3frx_A          229 -KAMYTLSAQ-DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVD------------DLRPEFAGYSKAAEPHAVSLA  293 (319)
T ss_dssp             -EEEEEEECC-SCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEE------------EECCCCTTCCGGGCCCEEEEE
T ss_pred             -cEEEEecCC-CcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeee------------ccCccccccccCcCcceeEEE
Confidence             566666554 6899999987  46776665 459999987642211            11111 111123344444  4


Q ss_pred             EEecCCEEEEecCCCeEEEEeCCch
Q 009993          429 VDIGADRIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       429 ~~~~~~~l~sg~~Dg~v~iwd~~~~  453 (520)
                      +++++++|++|+.||.|++||+.++
T Consensus       294 ~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          294 WSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             ECCCCCEEEEeecCceEEEEEEeec
Confidence            5556669999999999999998764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.5e-39  Score=318.94  Aligned_cols=281  Identities=25%  Similarity=0.382  Sum_probs=235.5

Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCc------------------eEE--EEecCCCEEEE
Q 009993          140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC------------------TIR--AVAADKKLLVA  199 (520)
Q Consensus       140 ~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~------------------~v~--~~~~~~~~l~s  199 (520)
                      +|.+.|++++|+|+|++|++|+ |+++++|++.+++.+..+..+..                  .|.  ++++++++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999987 78999999999998887765532                  244  45599999999


Q ss_pred             EeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeecc
Q 009993          200 GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSD  277 (520)
Q Consensus       200 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~  277 (520)
                      |+.||.|++||+.++.             ....+.+|...|.+++|  ++++|++++.|++|++||++++++...+.+..
T Consensus       141 ~~~d~~i~iwd~~~~~-------------~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~  207 (393)
T 1erj_A          141 GAEDRLIRIWDIENRK-------------IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED  207 (393)
T ss_dssp             EETTSCEEEEETTTTE-------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred             EcCCCeEEEEECCCCc-------------EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC
Confidence            9999999999997652             45677899999999999  77899999999999999999999998888888


Q ss_pred             CEEEEe--e-CCCEEEEEc-CCeEEEEECCCCeeeEEee------cccccceEEEEecCCCCEEEEEeCCCeEEEEEccc
Q 009993          278 WVYGLA--P-HDTTVASTS-GSDVYIWDTNSGCLLTVVN------GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIN  347 (520)
Q Consensus       278 ~v~~~~--~-~~~~l~~~~-d~~i~iwd~~~~~~~~~~~------~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~  347 (520)
                      .+.++.  + +++++++++ |+.|++||++++..+..+.      .+|...|++++|+|++++|++|+.||.|++||+++
T Consensus       208 ~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN  287 (393)
T ss_dssp             CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            888877  5 789999999 9999999999998877663      36889999999999999999999999999999986


Q ss_pred             Ccccc------ceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc
Q 009993          348 DCTEA------NVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML  419 (520)
Q Consensus       348 ~~~~~------~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (520)
                      .....      ...+...+.+|...|.+++|++  .+|++|+.||.|++||+.++                   .+...+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-------------------~~~~~l  348 (393)
T 1erj_A          288 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-------------------NPLLML  348 (393)
T ss_dssp             -------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-------------------CEEEEE
T ss_pred             CCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-------------------eEEEEE
Confidence            53211      1234567789999999999965  79999999999999999873                   334456


Q ss_pred             cCcceeeEEEEec--------CCEEEEecCCCeEEEEeCCch
Q 009993          420 HGFECNLLSVDIG--------ADRIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       420 ~~~~~~v~~~~~~--------~~~l~sg~~Dg~v~iwd~~~~  453 (520)
                      .+|...|.++.+.        +.+|+||+.||+|+||++...
T Consensus       349 ~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          349 QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             CCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            7888888888865        358999999999999998653

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.8e-40  Score=319.45  Aligned_cols=299  Identities=20%  Similarity=0.259  Sum_probs=222.1

Q ss_pred             CCCCCCcccHHHhhhhhccccccEEEEEEccCCCEEEEEeC------CCeEEEEECCCCcEEEE----eCCCCceEEEEe
Q 009993          122 GAGFSDDKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGY------DSIVRMWHLEDGFSIAS----SKPLGCTIRAVA  191 (520)
Q Consensus       122 ~~~~~~~~~W~~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~------dg~v~vwd~~~~~~~~~----~~~~~~~v~~~~  191 (520)
                      ..+....+.|+.......+|.+.|++++|+|||++|++|+.      |+.|++|+..++.....    ..+|...|.++.
T Consensus        22 ~~g~~~~~~w~~p~~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~  101 (357)
T 4g56_B           22 SNGSSKGSAWGRPVTAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVA  101 (357)
T ss_dssp             ------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEE
T ss_pred             cCCCccccccCCCCCCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEE
Confidence            34555668898777777899999999999999999999997      78899999887754332    345766777665


Q ss_pred             --cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCC
Q 009993          192 --ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL  267 (520)
Q Consensus       192 --~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~  267 (520)
                        |++ .+++++.||+|++||+.++...         ........+|...|++++|  ++++|++|+.|++|++||++++
T Consensus       102 ~s~d~-~~l~~s~dg~v~lWd~~~~~~~---------~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~  171 (357)
T 4g56_B          102 WVSEK-GILVASDSGAVELWEILEKESL---------LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK  171 (357)
T ss_dssp             EETTT-EEEEEETTSCEEEC-----------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT
T ss_pred             EcCCC-CEEEEECCCEEEEeecccccee---------EEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence              765 5667889999999999876421         1233456689999999999  7789999999999999999999


Q ss_pred             cEEEEee-eccCEEEEe--eCC-CEEEEEc-CCeEEEEECCCCeeeEEee-cccccceEEEEecCC-CCEEEEEeCCCeE
Q 009993          268 KCLKVLR-HSDWVYGLA--PHD-TTVASTS-GSDVYIWDTNSGCLLTVVN-GAHVGNTKSLARSHT-GDFLFTGGEDGAI  340 (520)
Q Consensus       268 ~~~~~~~-~~~~v~~~~--~~~-~~l~~~~-d~~i~iwd~~~~~~~~~~~-~~~~~~i~~l~~s~~-~~~l~tg~~dg~i  340 (520)
                      +++..+. |...|.++.  +++ .++++++ |+.|++||+++++....+. ..|...+++++|+|+ +.+|++|+.|+.|
T Consensus       172 ~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i  251 (357)
T 4g56_B          172 AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNV  251 (357)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCE
T ss_pred             cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccce
Confidence            9999887 899999987  454 4677777 9999999999988776554 246778999999997 4689999999999


Q ss_pred             EEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcc
Q 009993          341 HMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQR  417 (520)
Q Consensus       341 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (520)
                      ++||++++      ..+..+.+|...|++++|+|   .+|++|+.||+|+|||++++.                   ...
T Consensus       252 ~~wd~~~~------~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~-------------------~~~  306 (357)
T 4g56_B          252 SLVNIKNP------DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE-------------------VFR  306 (357)
T ss_dssp             EEEESSCG------GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE-------------------EEE
T ss_pred             eEEECCCC------cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc-------------------EeE
Confidence            99999988      67888999999999999976   479999999999999998742                   111


Q ss_pred             cccCcceeeEEEEec---CCEEEEecCCCeEEEEeCCchHhH
Q 009993          418 MLHGFECNLLSVDIG---ADRIVCGGEEGIVRIWNFSQAFEI  456 (520)
Q Consensus       418 ~~~~~~~~v~~~~~~---~~~l~sg~~Dg~v~iwd~~~~~~~  456 (520)
                       ..+|...|.+++|+   +.+|+|||.||+|++|++......
T Consensus       307 -~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~  347 (357)
T 4g56_B          307 -DLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT  347 (357)
T ss_dssp             -ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred             -ECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence             23678888888875   459999999999999999865443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.6e-40  Score=314.84  Aligned_cols=290  Identities=18%  Similarity=0.205  Sum_probs=224.1

Q ss_pred             ccHHHhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC-----------cEEEEeCCCCceEEEEe--cCCC
Q 009993          129 KSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-----------FSIASSKPLGCTIRAVA--ADKK  195 (520)
Q Consensus       129 ~~W~~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~-----------~~~~~~~~~~~~v~~~~--~~~~  195 (520)
                      +.|+-.......|...|.+++|+|||++|++++ |+++++||....           ........+...|.++.  ++ .
T Consensus        17 r~w~~~~~~~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~   94 (344)
T 4gqb_B           17 REWNLPPNAPACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-R   94 (344)
T ss_dssp             ------CCSCSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT-T
T ss_pred             cccCCCCCCcccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC-C
Confidence            456544445567888899999999999999888 778888873211           00111112334566555  65 5


Q ss_pred             EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEe
Q 009993          196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL  273 (520)
Q Consensus       196 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~  273 (520)
                      .|++|+.||+|++||+.++...         ......+.+|.+.|++++|  ++++|++|+.|++|++||+++++++..+
T Consensus        95 ~l~~~s~dg~v~lWd~~~~~~~---------~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~  165 (344)
T 4gqb_B           95 GILVASDSGAVELWELDENETL---------IVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY  165 (344)
T ss_dssp             EEEEEETTSEEEEEEECTTSSC---------EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             eEEEEECCCEEEEEeccCCCce---------eEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            7889999999999999876421         1223456689999999999  7899999999999999999999999998


Q ss_pred             e-eccCEEEEe--eCC-CEEEEEc-CCeEEEEECCCCeeeEEeec-ccccceEEEEecCC-CCEEEEEeCCCeEEEEEcc
Q 009993          274 R-HSDWVYGLA--PHD-TTVASTS-GSDVYIWDTNSGCLLTVVNG-AHVGNTKSLARSHT-GDFLFTGGEDGAIHMYEII  346 (520)
Q Consensus       274 ~-~~~~v~~~~--~~~-~~l~~~~-d~~i~iwd~~~~~~~~~~~~-~~~~~i~~l~~s~~-~~~l~tg~~dg~i~iwd~~  346 (520)
                      . |...|.++.  +++ .++++++ |+.|++||+++++....+.. .|...+.+++|+|+ +.+|++|+.||.|++||++
T Consensus       166 ~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~  245 (344)
T 4gqb_B          166 RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK  245 (344)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred             cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence            7 999999988  555 5778888 99999999999988877652 35567999999995 5688999999999999999


Q ss_pred             cCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcc
Q 009993          347 NDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE  423 (520)
Q Consensus       347 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (520)
                      ++      .++.++.+|...|++++|+|   .+|++|+.|++|+|||+.++.                    ...+.+|.
T Consensus       246 ~~------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~--------------------~~~~~~H~  299 (344)
T 4gqb_B          246 ST------SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE--------------------LFRSQAHR  299 (344)
T ss_dssp             C--------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE--------------------EEEECCCS
T ss_pred             CC------cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc--------------------EEEEcCCC
Confidence            88      77888999999999999976   479999999999999998631                    11246788


Q ss_pred             eeeEEEEecC--C-EEEEecCCCeEEEEeCCchHh
Q 009993          424 CNLLSVDIGA--D-RIVCGGEEGIVRIWNFSQAFE  455 (520)
Q Consensus       424 ~~v~~~~~~~--~-~l~sg~~Dg~v~iwd~~~~~~  455 (520)
                      ..|.++.|++  . +|++||.||+|++|++.++..
T Consensus       300 ~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          300 DFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             SCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             CCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence            8898888764  3 788999999999999987543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=8.6e-39  Score=307.65  Aligned_cols=292  Identities=18%  Similarity=0.299  Sum_probs=226.0

Q ss_pred             HhhhhhccccccEEEEEE-----cc-CCCEEEEEeCCCeEEEEECCCC-------cEEEEeCCCCceEEEEe--cCCCEE
Q 009993          133 ELIDVLYGHTEAVLTVFV-----LA-SAKLLFTSGYDSIVRMWHLEDG-------FSIASSKPLGCTIRAVA--ADKKLL  197 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~-----~~-~~~~l~sgs~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~~~--~~~~~l  197 (520)
                      .+..+|+||.+.|++++|     ++ ++++|+||+.|++|++||+.++       .....+.+|...|.++.  +++.++
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l   91 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA   91 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence            346689999999999999     76 8999999999999999999753       45677889998888765  899999


Q ss_pred             EEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEe--
Q 009993          198 VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL--  273 (520)
Q Consensus       198 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~--  273 (520)
                      ++|+.|++|++||+.++.             ....+.+|...|.+++|  ++++|++++.|++|++||+.........  
T Consensus        92 ~s~s~D~~v~lwd~~~~~-------------~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  158 (343)
T 2xzm_R           92 ISSSWDKTLRLWDLRTGT-------------TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEK  158 (343)
T ss_dssp             EEEETTSEEEEEETTSSC-------------EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTT
T ss_pred             EEEcCCCcEEEEECCCCc-------------EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecc
Confidence            999999999999998763             45677899999999999  6789999999999999999844333322  


Q ss_pred             -eeccCEEEEe--eCC----------CEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCe
Q 009993          274 -RHSDWVYGLA--PHD----------TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA  339 (520)
Q Consensus       274 -~~~~~v~~~~--~~~----------~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~  339 (520)
                       .|...|.++.  +++          .++++++ |+.|++||. ..+....+. +|...|.+++|+|+|++|++|+.||.
T Consensus       159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~-~h~~~v~~~~~s~~g~~l~sgs~dg~  236 (343)
T 2xzm_R          159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK-AHESNVNHLSISPNGKYIATGGKDKK  236 (343)
T ss_dssp             TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred             cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEc-CccccceEEEECCCCCEEEEEcCCCe
Confidence             3778888887  443          6888888 999999994 455666665 69999999999999999999999999


Q ss_pred             EEEEEcccCccccceeeeeeecCCcCCEEEEEecCC-EEEEEeCCCcEEEEeCCcccccC--CCCCCCceeeeeecCCCc
Q 009993          340 IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP-WLVSAAGDGKLSLIDVRKLLRSG--RPTSGKRVSRVIEVEPPQ  416 (520)
Q Consensus       340 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~  416 (520)
                      |++||+....     .....+ .+...|++++|+|+ .+++++.|+.|++||+.+.....  ......        ....
T Consensus       237 v~iwd~~~~~-----~~~~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~--------~~~~  302 (343)
T 2xzm_R          237 LLIWDILNLT-----YPQREF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEP--------ITKA  302 (343)
T ss_dssp             EEEEESSCCS-----SCSEEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCS--------GGGB
T ss_pred             EEEEECCCCc-----ccceee-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCc--------chhh
Confidence            9999995442     222222 34567999999873 44556678889999998743221  000000        0001


Q ss_pred             ccccCcceeeEEEEec--CCEEEEecCCCeEEEEeCCch
Q 009993          417 RMLHGFECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       417 ~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~~~  453 (520)
                      ....+|...+.+++|+  +.+|++|+.||.|++|+++++
T Consensus       303 ~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          303 EGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             TTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             hhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            1123566667666655  559999999999999998765

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.8e-39  Score=305.38  Aligned_cols=294  Identities=22%  Similarity=0.296  Sum_probs=223.1

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC--cEEEEe-CC-CCceEEEEe--cCCCEEEEEeCCCcEEE
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG--FSIASS-KP-LGCTIRAVA--ADKKLLVAGGTDGFIHC  208 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~--~~~~~~-~~-~~~~v~~~~--~~~~~l~sg~~dg~i~v  208 (520)
                      +++|++|.+.|++++|+|+  +|++|+.|++|++||+.++  ..+..+ .+ |...|.++.  |++++|++|+.|++|++
T Consensus         7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i   84 (330)
T 2hes_X            7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI   84 (330)
T ss_dssp             EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence            5678999999999999987  9999999999999999875  445555 44 888887765  89999999999999999


Q ss_pred             EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCC----cEEEEee-eccCEEE
Q 009993          209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL----KCLKVLR-HSDWVYG  281 (520)
Q Consensus       209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~----~~~~~~~-~~~~v~~  281 (520)
                      ||+......      .........+.+|...|.+++|  ++++|++|+.|++|++||++..    +++..+. |...|.+
T Consensus        85 w~~~~~~~~------~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~  158 (330)
T 2hes_X           85 WAKEESADR------TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH  158 (330)
T ss_dssp             EEC-------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEE
T ss_pred             EEcccCcCc------cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEE
Confidence            998543110      0112345667899999999999  6789999999999999999432    4556665 8899999


Q ss_pred             Ee--eCCCEEEEEc-CCeEEEEECCCC--eeeEEeecccccceEEEEecCC--CCEEEEEeCCCeEEEEEcccCcccc--
Q 009993          282 LA--PHDTTVASTS-GSDVYIWDTNSG--CLLTVVNGAHVGNTKSLARSHT--GDFLFTGGEDGAIHMYEIINDCTEA--  352 (520)
Q Consensus       282 ~~--~~~~~l~~~~-d~~i~iwd~~~~--~~~~~~~~~~~~~i~~l~~s~~--~~~l~tg~~dg~i~iwd~~~~~~~~--  352 (520)
                      +.  |++.+|++++ |++|++||..++  +++..+. +|...|.+++|+|+  +.+|++|+.|++|++||++......  
T Consensus       159 v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~  237 (330)
T 2hes_X          159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN-GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQ  237 (330)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc-CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccc
Confidence            87  8899999999 999999999876  5666665 79999999999998  6789999999999999997652211  


Q ss_pred             ceeeeeeecC-CcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcce-eeEEE
Q 009993          353 NVLLVATWIP-HTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC-NLLSV  429 (520)
Q Consensus       353 ~~~~~~~~~~-h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~  429 (520)
                      .......+.+ |...|++++|++ .+|++++.||.|++||..++..                ........+|.. .+.++
T Consensus       238 ~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~----------------~~~~~~~~~h~~~~v~~v  301 (330)
T 2hes_X          238 EWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEW----------------KVFAKRALCHGVYEINVV  301 (330)
T ss_dssp             EEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEE----------------EEEEEESCTTTTSCEEEE
T ss_pred             eeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCce----------------EEEeccccccccceEEEE
Confidence            1123444544 899999999975 6899999999999999865310                000111234554 56666


Q ss_pred             Eec----CCEEEEecCCCeEEEEeCCch
Q 009993          430 DIG----ADRIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       430 ~~~----~~~l~sg~~Dg~v~iwd~~~~  453 (520)
                      .+.    +.+|++|+.||+|+||++++.
T Consensus       302 ~~~~~~~~~~las~s~Dg~v~~W~~~~~  329 (330)
T 2hes_X          302 KWLELNGKTILATGGDDGIVNFWSLEKA  329 (330)
T ss_dssp             EEC-----CCEEEEETTSEEEEEEC---
T ss_pred             EEecCCCceEEEEecCCCcEEEEEeccC
Confidence            654    458999999999999998753

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.7e-38  Score=305.04  Aligned_cols=291  Identities=21%  Similarity=0.324  Sum_probs=231.8

Q ss_pred             HhhhhhccccccEEEEEEccC-CCEEEEEeCCCeEEEEECCCCc-----EEEEeCCCCceEEEEe--cCCCEEEEEeCCC
Q 009993          133 ELIDVLYGHTEAVLTVFVLAS-AKLLFTSGYDSIVRMWHLEDGF-----SIASSKPLGCTIRAVA--ADKKLLVAGGTDG  204 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~-~~~l~sgs~dg~v~vwd~~~~~-----~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg  204 (520)
                      .+..+|+||++.|++|+|+|+ +++|+|||.|++|+|||+.+++     +...+.+|...|.++.  +++++|++|+.|+
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~  108 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG  108 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence            345679999999999999997 6899999999999999987653     5667889998888765  8999999999999


Q ss_pred             cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--eccCEE
Q 009993          205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVY  280 (520)
Q Consensus       205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~  280 (520)
                      .|++|+.....             .......+...+..+.+  ++.++++|+.|+.+++||...........  |...+.
T Consensus       109 ~i~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~  175 (340)
T 4aow_A          109 TLRLWDLTTGT-------------TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVS  175 (340)
T ss_dssp             EEEEEETTTTE-------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEE
T ss_pred             cceEEeecccc-------------eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCccc
Confidence            99999986652             34445567777888877  67889999999999999998765544332  778888


Q ss_pred             EEe--e--CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccccee
Q 009993          281 GLA--P--HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL  355 (520)
Q Consensus       281 ~~~--~--~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~  355 (520)
                      .+.  +  ...++++++ |+.|++||+++++.+..+. +|.+.|++++|+|++++|++|+.||.|++||+++.      .
T Consensus       176 ~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~------~  248 (340)
T 4aow_A          176 CVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG------K  248 (340)
T ss_dssp             EEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT------E
T ss_pred             ceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEec-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC------c
Confidence            776  2  345677777 9999999999999998887 69999999999999999999999999999999988      5


Q ss_pred             eeeeecCCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC-
Q 009993          356 LVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA-  433 (520)
Q Consensus       356 ~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  433 (520)
                      .+..+..+ ..|.++.|+| ..+++++.|+.|++||+++.......          ..........+|...|.++.+++ 
T Consensus       249 ~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~----------~~~~~~~~~~~h~~~v~~l~~s~d  317 (340)
T 4aow_A          249 HLYTLDGG-DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDEL----------KQEVISTSSKAEPPQCTSLAWSAD  317 (340)
T ss_dssp             EEEEEECS-SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEE----------CCC-------CCCCCEEEEEECTT
T ss_pred             eeeeecCC-ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEec----------cccceeeeccCCCCCEEEEEECCC
Confidence            66666544 5899999987 57888889999999999874322111          01122233456777777777654 


Q ss_pred             -CEEEEecCCCeEEEEeCCchH
Q 009993          434 -DRIVCGGEEGIVRIWNFSQAF  454 (520)
Q Consensus       434 -~~l~sg~~Dg~v~iwd~~~~~  454 (520)
                       ++|++|+.||.|+|||+++|.
T Consensus       318 g~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          318 GQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             SSEEEEEETTSCEEEEEEEC--
T ss_pred             CCEEEEEeCCCEEEEEeCCCcC
Confidence             599999999999999999875

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.8e-39  Score=316.94  Aligned_cols=265  Identities=23%  Similarity=0.328  Sum_probs=232.8

Q ss_pred             hhhhhcCCCCCCC-CCCCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC
Q 009993          107 FYCERWGLPIASA-PLGAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK  181 (520)
Q Consensus       107 ~~~~~~~~~~~~~-~~~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~  181 (520)
                      +.|..|. |.... ..++.+...++|+    ++.+++++|.+.|++++|+|++++|++|+.|++|++||+.+++.+..+.
T Consensus       111 V~~~~~~-p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~  189 (410)
T 1vyh_C          111 VTRVIFH-PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH  189 (410)
T ss_dssp             EEEEEEC-SSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC
T ss_pred             EEEEEEc-CCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc
Confidence            4555665 44332 2334456678998    5678899999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCC
Q 009993          182 PLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM  257 (520)
Q Consensus       182 ~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg  257 (520)
                      +|...|.++.  |++++|++|+.|++|++||+.++.             ....+.+|...|.++.+  ++.++++|+.|+
T Consensus       190 ~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-------------~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~  256 (410)
T 1vyh_C          190 GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-------------CVKTFTGHREWVRMVRPNQDGTLIASCSNDQ  256 (410)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-------------EEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-------------EEEEEeCCCccEEEEEECCCCCEEEEEcCCC
Confidence            9998888776  899999999999999999998763             45677899999999999  778999999999


Q ss_pred             eEEEEECCCCcEEEEee-eccCEEEEe--eC--------------------CCEEEEEc-CCeEEEEECCCCeeeEEeec
Q 009993          258 TVRVWDRALLKCLKVLR-HSDWVYGLA--PH--------------------DTTVASTS-GSDVYIWDTNSGCLLTVVNG  313 (520)
Q Consensus       258 ~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~--------------------~~~l~~~~-d~~i~iwd~~~~~~~~~~~~  313 (520)
                      +|++||+.++++...+. |...|.++.  |+                    +.++++|+ |+.|++||++++.++..+. 
T Consensus       257 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~-  335 (410)
T 1vyh_C          257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV-  335 (410)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE-
T ss_pred             eEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE-
Confidence            99999999999988886 888999887  43                    56899988 9999999999999998887 


Q ss_pred             ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeC
Q 009993          314 AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDV  391 (520)
Q Consensus       314 ~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~  391 (520)
                      +|...|++++|+|++.+|++|+.||.|++||+.++      .++..+.+|...|++++|+|  .+|++|+.||+|++|++
T Consensus       336 ~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~------~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK------RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS------CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            69999999999999999999999999999999888      67888899999999999987  59999999999999996


Q ss_pred             C
Q 009993          392 R  392 (520)
Q Consensus       392 ~  392 (520)
                      +
T Consensus       410 r  410 (410)
T 1vyh_C          410 R  410 (410)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.1e-37  Score=321.83  Aligned_cols=316  Identities=22%  Similarity=0.343  Sum_probs=263.0

Q ss_pred             CCCCCcccHH---HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEE
Q 009993          123 AGFSDDKSWK---ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLL  197 (520)
Q Consensus       123 ~~~~~~~~W~---~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l  197 (520)
                      +.+...++|+   +.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|.++.  |++..+
T Consensus       240 ~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l  318 (577)
T 2ymu_A          240 SDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTI  318 (577)
T ss_dssp             ETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             eCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEE
Confidence            3345568897   456778999999999999999999999999999999996 5677888899998887765  899999


Q ss_pred             EEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-
Q 009993          198 VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-  274 (520)
Q Consensus       198 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-  274 (520)
                      ++++.||.|++||....              ....+.+|...|.++++  ++.++++++.|++|++||. +++.+..+. 
T Consensus       319 ~t~~~d~~i~~w~~~~~--------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~  383 (577)
T 2ymu_A          319 ASASDDKTVKLWNRNGQ--------------HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG  383 (577)
T ss_dssp             EEEETTSCEEEEETTSC--------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEEC
T ss_pred             EEEeCCCeEEEEeCCCC--------------eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecC
Confidence            99999999999997543              34567789999999999  7789999999999999996 566677666 


Q ss_pred             eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccc
Q 009993          275 HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE  351 (520)
Q Consensus       275 ~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~  351 (520)
                      |...|.++.  ++++++++++ |+.|++||. +++.+..+. +|...|++++|+|++++|++++.|+.|++||...    
T Consensus       384 ~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~----  457 (577)
T 2ymu_A          384 HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG----  457 (577)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS----
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEec-CCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC----
Confidence            889999887  8899999998 999999995 566677776 6999999999999999999999999999999643    


Q ss_pred             cceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEE
Q 009993          352 ANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSV  429 (520)
Q Consensus       352 ~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  429 (520)
                         ..+..+.+|...|++++|+|  .+|++++.|+.|++||...                    .....+.+|...|.++
T Consensus       458 ---~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~--------------------~~~~~~~~h~~~v~~l  514 (577)
T 2ymu_A          458 ---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--------------------QLLQTLTGHSSSVRGV  514 (577)
T ss_dssp             ---CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS--------------------CEEEEEECCSSCEEEE
T ss_pred             ---CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC--------------------CEEEEEeCCCCCEEEE
Confidence               46778889999999999976  6999999999999999642                    2334456787777777


Q ss_pred             Eec--CCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccccc
Q 009993          430 DIG--ADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA  494 (520)
Q Consensus       430 ~~~--~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~  494 (520)
                      .++  +++|++++.||.|++||.. ++.+          .....+...+..++|+|||+.+++++.+
T Consensus       515 ~~s~dg~~l~s~~~dg~v~lwd~~-~~~~----------~~~~~h~~~v~~~~fs~dg~~l~s~~~D  570 (577)
T 2ymu_A          515 AFSPDGQTIASASDDKTVKLWNRN-GQLL----------QTLTGHSSSVWGVAFSPDGQTIASASSD  570 (577)
T ss_dssp             EECTTSSCEEEEETTSEEEEECTT-SCEE----------EEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred             EEcCCCCEEEEEECcCEEEEEeCC-CCEE----------EEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence            765  4599999999999999964 3221          1122345567899999999999987753

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-37  Score=292.26  Aligned_cols=284  Identities=21%  Similarity=0.332  Sum_probs=242.4

Q ss_pred             HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR  210 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd  210 (520)
                      ++.+++.+|.+.|++++| |++++|++|+.||.|++||+.++.....+..|...+.++.  +++.++++|+.||.|++|+
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~   87 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP   87 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            346788999999999999 9999999999999999999999998888888888887765  9999999999999999999


Q ss_pred             cccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--e-CC
Q 009993          211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--P-HD  286 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~-~~  286 (520)
                      +....          .......+.+|...|.++.|+++++++++.||.|++||  .++....+. |...+.++.  + ++
T Consensus        88 ~~~~~----------~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~  155 (313)
T 3odt_A           88 LFATS----------GEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSE  155 (313)
T ss_dssp             TTCCT----------TSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTT
T ss_pred             eeecC----------CCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCC
Confidence            86642          12345667899999999999999999999999999999  666666666 888898877  4 88


Q ss_pred             CEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcC
Q 009993          287 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG  365 (520)
Q Consensus       287 ~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  365 (520)
                      ..+++++ |+.|++||  .++....+...|...+.+++|+|++. +++++.||.|++||++++      ..+..+.+|..
T Consensus       156 ~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~------~~~~~~~~~~~  226 (313)
T 3odt_A          156 NKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG------DVLRTYEGHES  226 (313)
T ss_dssp             TEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC------CEEEEEECCSS
T ss_pred             CEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch------hhhhhhhcCCc
Confidence            9999988 99999999  55666666655899999999999988 999999999999999988      67888889999


Q ss_pred             CEEEEEecCC-EEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-EEEEecCCC
Q 009993          366 PVNSLAFEFP-WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEG  443 (520)
Q Consensus       366 ~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg  443 (520)
                      .|++++|+|+ .|++++.||.|++||++++                   .....+..|...+.++.++++ .+++++.||
T Consensus       227 ~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~-------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg  287 (313)
T 3odt_A          227 FVYCIKLLPNGDIVSCGEDRTVRIWSKENG-------------------SLKQVITLPAISIWSVDCMSNGDIIVGSSDN  287 (313)
T ss_dssp             CEEEEEECTTSCEEEEETTSEEEEECTTTC-------------------CEEEEEECSSSCEEEEEECTTSCEEEEETTS
T ss_pred             eEEEEEEecCCCEEEEecCCEEEEEECCCC-------------------ceeEEEeccCceEEEEEEccCCCEEEEeCCC
Confidence            9999999874 8999999999999999873                   233445566667777777655 577899999


Q ss_pred             eEEEEeCCchHhHH
Q 009993          444 IVRIWNFSQAFEIE  457 (520)
Q Consensus       444 ~v~iwd~~~~~~~~  457 (520)
                      .|++||+.++....
T Consensus       288 ~i~iw~~~~~~~~~  301 (313)
T 3odt_A          288 LVRIFSQEKSRWAS  301 (313)
T ss_dssp             CEEEEESCGGGCCC
T ss_pred             cEEEEeCCCCceee
Confidence            99999999875543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.5e-38  Score=301.64  Aligned_cols=265  Identities=16%  Similarity=0.165  Sum_probs=217.2

Q ss_pred             hhhhhcCCCCCCCCCCCCCCCcccHHHh---------------hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEEC
Q 009993          107 FYCERWGLPIASAPLGAGFSDDKSWKEL---------------IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHL  171 (520)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~W~~~---------------~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~  171 (520)
                      +.+..|+ |+..+++..++...++|+..               ......|...|.+++|+|++ .|++|+.||+|+|||+
T Consensus        33 v~~~~fs-~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~  110 (344)
T 4gqb_B           33 LEAARYR-SDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWEL  110 (344)
T ss_dssp             EEEEEEC-TTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEE
T ss_pred             EEEEEEC-CCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEec
Confidence            4567787 66666655556666788621               11223456789999999985 6889999999999999


Q ss_pred             CCCcEEEE----eCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE
Q 009993          172 EDGFSIAS----SKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL  245 (520)
Q Consensus       172 ~~~~~~~~----~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  245 (520)
                      .+++.+..    ..+|...|.++.  +++++|++|+.||+|++||+.++.             ....+.+|.+.|.+++|
T Consensus       111 ~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~-------------~~~~~~~h~~~V~~~~~  177 (344)
T 4gqb_B          111 DENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV-------------VLSSYRAHAAQVTCVAA  177 (344)
T ss_dssp             CTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-------------EEEEECCCSSCEEEEEE
T ss_pred             cCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-------------EEEEEcCcCCceEEEEe
Confidence            99876543    348988888765  899999999999999999998763             56778899999999999


Q ss_pred             --cC-CEEEEEecCCeEEEEECCCCcEEEEee---eccCEEEEe--e-CCCEEEEEc-CCeEEEEECCCCeeeEEeeccc
Q 009993          246 --DL-TRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA--P-HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAH  315 (520)
Q Consensus       246 --~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~--~-~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~  315 (520)
                        ++ ..+++|+.|++|++||+++++....+.   +...+.++.  + +++++++|+ |+.|++||+++++++..+. +|
T Consensus       178 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~-~h  256 (344)
T 4gqb_B          178 SPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA-VH  256 (344)
T ss_dssp             CSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE-CC
T ss_pred             cCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc-CC
Confidence              33 578999999999999999999888875   556677777  4 567888888 9999999999999999887 69


Q ss_pred             ccceEEEEecCCC-CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeC
Q 009993          316 VGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDV  391 (520)
Q Consensus       316 ~~~i~~l~~s~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~  391 (520)
                      ...|++++|+|++ .+|++|+.|++|+|||++++      . +..+.+|.+.|++++|+|   .+|++|+.||+|++|++
T Consensus       257 ~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~------~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v  329 (344)
T 4gqb_B          257 SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS------E-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV  329 (344)
T ss_dssp             SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC------E-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred             CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC------c-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence            9999999999998 57999999999999999887      3 345789999999999976   36889999999999999


Q ss_pred             Ccc
Q 009993          392 RKL  394 (520)
Q Consensus       392 ~~~  394 (520)
                      .+.
T Consensus       330 ~~~  332 (344)
T 4gqb_B          330 PTE  332 (344)
T ss_dssp             CC-
T ss_pred             CCC
Confidence            863

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.9e-37  Score=295.00  Aligned_cols=250  Identities=22%  Similarity=0.282  Sum_probs=224.7

Q ss_pred             CCCCCcccHH------HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceE--EEEecCC
Q 009993          123 AGFSDDKSWK------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTI--RAVAADK  194 (520)
Q Consensus       123 ~~~~~~~~W~------~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v--~~~~~~~  194 (520)
                      +.+...++|+      .+...+.||...|.+++|++++.++++|+.|++|++||+.+++.+..+..|...+  .+++|++
T Consensus        55 s~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg  134 (321)
T 3ow8_A           55 SLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS  134 (321)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTS
T ss_pred             cCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCC
Confidence            4455668997      2345689999999999999999999999999999999999999999888776655  4566999


Q ss_pred             CEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEE
Q 009993          195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKV  272 (520)
Q Consensus       195 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~  272 (520)
                      ++|++|+.||.|++|++.++.             ....+..|...|.+++|  ++++|++|+.||.|++||+++++.+..
T Consensus       135 ~~l~~g~~dg~v~i~~~~~~~-------------~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~  201 (321)
T 3ow8_A          135 QYLATGTHVGKVNIFGVESGK-------------KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT  201 (321)
T ss_dssp             SEEEEECTTSEEEEEETTTCS-------------EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             CEEEEEcCCCcEEEEEcCCCc-------------eeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence            999999999999999997763             44567788899999999  778999999999999999999999988


Q ss_pred             ee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993          273 LR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  348 (520)
Q Consensus       273 ~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~  348 (520)
                      +. |...|.++.  |++++|++++ |+.|++||+++++....+. +|...|.+++|+|++.+|++|+.|++|++||++++
T Consensus       202 ~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~  280 (321)
T 3ow8_A          202 LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR  280 (321)
T ss_dssp             ECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             EcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc-CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence            87 888888877  8899999999 9999999999999888886 69999999999999999999999999999999998


Q ss_pred             ccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCC
Q 009993          349 CTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       349 ~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~  392 (520)
                            .++.++.+|...|++++|+|  .+|++++.||.|++||..
T Consensus       281 ------~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          281 ------TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             ------EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             ------EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence                  78889999999999999976  699999999999999963

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6.9e-37  Score=305.42  Aligned_cols=291  Identities=21%  Similarity=0.397  Sum_probs=253.4

Q ss_pred             CCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEE
Q 009993          125 FSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAG  200 (520)
Q Consensus       125 ~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg  200 (520)
                      +...++|+    +.+..+.+|.+.|++++|+  ++++++|+.||+|++||+.+++.+..+.+|...|.++..+++.+++|
T Consensus       138 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~  215 (445)
T 2ovr_B          138 DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSG  215 (445)
T ss_dssp             TSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEE
T ss_pred             CCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEE
Confidence            45568888    5577889999999999997  67999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee-eccCE
Q 009993          201 GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWV  279 (520)
Q Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v  279 (520)
                      +.||.|++||+.++.             ....+.+|...|.++.++++++++|+.||.|++||+++++.+..+. |...|
T Consensus       216 s~dg~i~~wd~~~~~-------------~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  282 (445)
T 2ovr_B          216 SRDATLRVWDIETGQ-------------CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV  282 (445)
T ss_dssp             ETTSEEEEEESSSCC-------------EEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCE
T ss_pred             eCCCEEEEEECCCCc-------------EEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCce
Confidence            999999999997753             4566778999999999999999999999999999999999998887 88999


Q ss_pred             EEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeee
Q 009993          280 YGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA  358 (520)
Q Consensus       280 ~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~  358 (520)
                      .++..++..+++++ |+.|++||+++++.+..+. +|...+.++.+  +++++++|+.||.|++||++++      ..+.
T Consensus       283 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~------~~~~  353 (445)
T 2ovr_B          283 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT-GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTG------QCLQ  353 (445)
T ss_dssp             EEEEECSSEEEEEETTSCEEEEETTTCCEEEEEC-CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTC------CEEE
T ss_pred             EEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEc-CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCC------cEEE
Confidence            99999999999999 9999999999999998887 68889998887  4679999999999999999888      5666


Q ss_pred             eecC---CcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-
Q 009993          359 TWIP---HTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-  434 (520)
Q Consensus       359 ~~~~---h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-  434 (520)
                      .+.+   |...|++++|++++|++|+.||.|++||+.++....         .+..     ....+|...+.++.++++ 
T Consensus       354 ~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~---------~~~~-----~~~~~~~~~v~~~~~s~~~  419 (445)
T 2ovr_B          354 TLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR---------NLVT-----LESGGSGGVVWRIRASNTK  419 (445)
T ss_dssp             EECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE---------EEEE-----CTTGGGTCEEEEEEECSSE
T ss_pred             EEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceee---------eeec-----cccCCCCceEEEEEecCCE
Confidence            6665   889999999999999999999999999998742211         1100     011456677888877766 


Q ss_pred             -EEEEecCCCe----EEEEeCCch
Q 009993          435 -RIVCGGEEGI----VRIWNFSQA  453 (520)
Q Consensus       435 -~l~sg~~Dg~----v~iwd~~~~  453 (520)
                       ++++|+.||+    |.+||++..
T Consensus       420 ~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          420 LVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEEEEECSSSSSCCEEEEEECCCC
T ss_pred             EEEEEcccCCCCccEEEEEECCCC
Confidence             8999999998    999999864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-37  Score=304.41  Aligned_cols=321  Identities=14%  Similarity=0.167  Sum_probs=246.7

Q ss_pred             HHhhhhhccc--cccEEEEEEccCCC-EEEEEeCCCeEEEEEC----CCCc------EEEEeCC----------CCceEE
Q 009993          132 KELIDVLYGH--TEAVLTVFVLASAK-LLFTSGYDSIVRMWHL----EDGF------SIASSKP----------LGCTIR  188 (520)
Q Consensus       132 ~~~~~~l~~h--~~~V~~l~~~~~~~-~l~sgs~dg~v~vwd~----~~~~------~~~~~~~----------~~~~v~  188 (520)
                      +...+.+..|  .+.|++++|+|+++ +|++|+.||.|++|++    .+++      ....+..          |...|.
T Consensus        33 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  112 (425)
T 1r5m_A           33 DGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVT  112 (425)
T ss_dssp             -CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEE
T ss_pred             hhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceE
Confidence            3445556554  59999999999999 9999999999999999    8887      4444433          566776


Q ss_pred             EEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEEC
Q 009993          189 AVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDR  264 (520)
Q Consensus       189 ~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~  264 (520)
                      ++.  +++++|++|+.||.|++||. ++             .....+.+|...|.+++|  ++++|++++.|+.|++||+
T Consensus       113 ~~~~s~~~~~l~~~~~dg~i~i~~~-~~-------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  178 (425)
T 1r5m_A          113 CLAWSHDGNSIVTGVENGELRLWNK-TG-------------ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNV  178 (425)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEET-TS-------------CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeC-CC-------------CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEEC
Confidence            665  89999999999999999993 32             255667789999999999  6789999999999999999


Q ss_pred             CCCcEEEEee-eccC---------------EEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEec
Q 009993          265 ALLKCLKVLR-HSDW---------------VYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARS  325 (520)
Q Consensus       265 ~~~~~~~~~~-~~~~---------------v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s  325 (520)
                      .+++.+..+. +...               +.++.  +++. +++++ ++.|++||+++++.+..+. +|...|.+++|+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~  256 (425)
T 1r5m_A          179 ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKTPTGKLI-GHHGPISVLEFN  256 (425)
T ss_dssp             TTTEEEEEECCC---------------CCCBSCCEEEETTE-EEEECGGGCEEEEETTCSSCSEEEC-CCSSCEEEEEEE
T ss_pred             CCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcCCCceeeeec-cCCCceEEEEEC
Confidence            9999888876 3333               55544  5544 55555 9999999999999888886 699999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCC-EEEEEeCCCcEEEEeCCcccccCCCCCCC
Q 009993          326 HTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP-WLVSAAGDGKLSLIDVRKLLRSGRPTSGK  404 (520)
Q Consensus       326 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  404 (520)
                      |++++|++++.||.|++||++++      ..+..+.+|...|.++.|+|+ ++++++.||.|++||+++..         
T Consensus       257 ~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---------  321 (425)
T 1r5m_A          257 DTNKLLLSASDDGTLRIWHGGNG------NSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNT---------  321 (425)
T ss_dssp             TTTTEEEEEETTSCEEEECSSSB------SCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTE---------
T ss_pred             CCCCEEEEEcCCCEEEEEECCCC------ccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCc---------
Confidence            99999999999999999999988      677788889999999999874 99999999999999998742         


Q ss_pred             ceeeeeecCCCcccccCcceeeEEEEec--CCEEEEecCCCeEEEEeCCchHhHHHHhhhhc----------ccccchhh
Q 009993          405 RVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQAFEIERRARALR----------GIRLENRM  472 (520)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~----------~~~~~~~~  472 (520)
                                ....+..|...+.++.++  +.+|++++.||.|++||+.++...........          ........
T Consensus       322 ----------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (425)
T 1r5m_A          322 ----------LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSS  391 (425)
T ss_dssp             ----------EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCT
T ss_pred             ----------EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCc
Confidence                      223344555666666655  56999999999999999987762211111000          11112222


Q ss_pred             hh--ccceeeeccCCCccccccc
Q 009993          473 RR--RKLQTEMSSKGGRTDQCSV  493 (520)
Q Consensus       473 ~~--~~~~~~~s~~g~~~~~~s~  493 (520)
                      ..  .+..++|+|+|+.+++++.
T Consensus       392 ~~~~~v~~~~~s~~~~~l~~~~~  414 (425)
T 1r5m_A          392 QDNDYIFDLSWNCAGNKISVAYS  414 (425)
T ss_dssp             TCCCCEEEEEECTTSSEEEEEES
T ss_pred             ccCCceEEEEccCCCceEEEEec
Confidence            22  6789999999999988774

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.2e-36  Score=314.13  Aligned_cols=315  Identities=22%  Similarity=0.345  Sum_probs=259.8

Q ss_pred             CCCcccHH---HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEE
Q 009993          125 FSDDKSWK---ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVA  199 (520)
Q Consensus       125 ~~~~~~W~---~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~s  199 (520)
                      +...++|+   +.+..+.+|.+.|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|.++.  |++..+++
T Consensus       201 d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~  279 (577)
T 2ymu_A          201 DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIAS  279 (577)
T ss_dssp             TSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             CCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEE
Confidence            44557887   456778999999999999999999999999999999995 5778888999999888765  89999999


Q ss_pred             EeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeecc
Q 009993          200 GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSD  277 (520)
Q Consensus       200 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~  277 (520)
                      ++.|+.|++||....              ....+.+|...|.++++  ++..+++++.|++|++||...........|..
T Consensus       280 ~~~d~~i~~w~~~~~--------------~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~  345 (577)
T 2ymu_A          280 ASDDKTVKLWNRNGQ--------------LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSS  345 (577)
T ss_dssp             EETTSCEEEEETTSC--------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSS
T ss_pred             EeCCCEEEEEeCCCc--------------EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCC
Confidence            999999999996432              45567899999999999  67899999999999999987655444444888


Q ss_pred             CEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccce
Q 009993          278 WVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV  354 (520)
Q Consensus       278 ~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~  354 (520)
                      .|.++.  |+++++++++ |+.|++||. +++.+..+. +|...|.+++|+|++++|++++.|+.|++||.. +      
T Consensus       346 ~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~-~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~------  416 (577)
T 2ymu_A          346 SVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G------  416 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-C------
T ss_pred             CEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEec-CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-C------
Confidence            998877  8899999998 899999995 566677776 699999999999999999999999999999953 3      


Q ss_pred             eeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEec
Q 009993          355 LLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG  432 (520)
Q Consensus       355 ~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  432 (520)
                      ..+..+.+|...|++++|+|  .+|++++.|+.|++||...                    .....+.+|...+.++.++
T Consensus       417 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--------------------~~~~~~~~~~~~v~~~~~s  476 (577)
T 2ymu_A          417 QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG--------------------QLLQTLTGHSSSVRGVAFS  476 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS--------------------CEEEEEECCSSCEEEEEEC
T ss_pred             CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC--------------------CEEEEEcCCCCCEEEEEEc
Confidence            46778889999999999976  6999999999999999643                    2233456677777766665


Q ss_pred             --CCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccccc
Q 009993          433 --ADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA  494 (520)
Q Consensus       433 --~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~  494 (520)
                        +.+|++++.|+.|++||.. +..+.          ....+...+..++|+|||+.+++++.+
T Consensus       477 pd~~~las~~~d~~i~iw~~~-~~~~~----------~~~~h~~~v~~l~~s~dg~~l~s~~~d  529 (577)
T 2ymu_A          477 PDGQTIASASDDKTVKLWNRN-GQLLQ----------TLTGHSSSVRGVAFSPDGQTIASASDD  529 (577)
T ss_dssp             TTSCEEEEEETTSEEEEEETT-SCEEE----------EEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred             CCCCEEEEEeCCCEEEEEcCC-CCEEE----------EEeCCCCCEEEEEEcCCCCEEEEEECc
Confidence              5599999999999999964 32211          112234557899999999999987753

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.1e-36  Score=293.03  Aligned_cols=301  Identities=14%  Similarity=0.115  Sum_probs=238.8

Q ss_pred             hhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc--EEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009993          137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV  212 (520)
Q Consensus       137 ~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~  212 (520)
                      .+..|.++|++++|+|++++|++|+.|+.|++||+.+++  .+..+.+|...|.++.  +++++|++++.||.|++||+.
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~   82 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   82 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence            356799999999999999999999999999999999987  8888999998887765  899999999999999999997


Q ss_pred             cCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcE---EEEee--eccCEEEEe--
Q 009993          213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKC---LKVLR--HSDWVYGLA--  283 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~---~~~~~--~~~~v~~~~--  283 (520)
                      ++.           ......+..|...|.+++|  +++++++++.|+.|++||++.+..   ...+.  |...|.++.  
T Consensus        83 ~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~  151 (372)
T 1k8k_C           83 GRT-----------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH  151 (372)
T ss_dssp             TTE-----------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred             CCe-----------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEc
Confidence            653           1233445679999999999  678999999999999999988763   33332  788899888  


Q ss_pred             eCCCEEEEEc-CCeEEEEEC------------------CCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEE
Q 009993          284 PHDTTVASTS-GSDVYIWDT------------------NSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE  344 (520)
Q Consensus       284 ~~~~~l~~~~-d~~i~iwd~------------------~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd  344 (520)
                      ++++++++++ |+.|++||+                  ..++.+..+. +|...|.+++|+|++.+|++++.||.|++||
T Consensus       152 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  230 (372)
T 1k8k_C          152 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSHDSTVCLAD  230 (372)
T ss_dssp             TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            7889999998 999999995                  4677777776 6999999999999999999999999999999


Q ss_pred             cccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc--cc--ccCCCCCCCce--------eee-
Q 009993          345 IINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK--LL--RSGRPTSGKRV--------SRV-  409 (520)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~--~~--~~~~~~~~~~~--------~~~-  409 (520)
                      ++++      ..+..+..|..+|++++|+|  .+|++| .|+.|++|++.+  +.  ...........        ..+ 
T Consensus       231 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (372)
T 1k8k_C          231 ADKK------MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQ  303 (372)
T ss_dssp             GGGT------TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHH
T ss_pred             CCCC------ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhh
Confidence            9988      67888889999999999975  355555 999999999987  31  11000000000        000 


Q ss_pred             --eecCCC-------cccccCcceeeEEEEe---cC---CEEEEecCCCeEEEEeCCchHhH
Q 009993          410 --IEVEPP-------QRMLHGFECNLLSVDI---GA---DRIVCGGEEGIVRIWNFSQAFEI  456 (520)
Q Consensus       410 --~~~~~~-------~~~~~~~~~~v~~~~~---~~---~~l~sg~~Dg~v~iwd~~~~~~~  456 (520)
                        ......       .....+|...|.++.+   ++   .+|+||+.||.|++|++.++..+
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~  365 (372)
T 1k8k_C          304 NLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA  365 (372)
T ss_dssp             HCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred             hcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence              000000       2223488888888863   34   79999999999999999876543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.9e-36  Score=297.35  Aligned_cols=299  Identities=17%  Similarity=0.120  Sum_probs=235.7

Q ss_pred             hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc------EEEEeCCCCceEEEEe--cC----C---CEEE
Q 009993          134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF------SIASSKPLGCTIRAVA--AD----K---KLLV  198 (520)
Q Consensus       134 ~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~------~~~~~~~~~~~v~~~~--~~----~---~~l~  198 (520)
                      +.+.+++|.+.|++++|+|  ++|++|+.||.|++||+.+++      .+..+.+|...|.++.  ++    +   .+|+
T Consensus         8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence            3567889999999999998  799999999999999999988      7888889998888765  77    8   9999


Q ss_pred             EEeCCCcEEEEEcccCcceeeeccCCccccceEEeccC-----CCCeEEEEEc------CCE-EEEEecCCeEEEEECCC
Q 009993          199 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH-----EGPITSLALD------LTR-IYSGSWDMTVRVWDRAL  266 (520)
Q Consensus       199 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~------~~~-l~s~s~dg~v~iwd~~~  266 (520)
                      +++.||.|++||+.++..        ........+..|     ...|.+++|.      +++ |++++.||.|++||+++
T Consensus        86 s~~~dg~i~iw~~~~~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  157 (397)
T 1sq9_A           86 TTSFSGDLLFYRITREDE--------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP  157 (397)
T ss_dssp             EEETTSCEEEEEEEECTT--------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred             EEcCCCCEEEEEccCCcc--------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence            999999999999987631        001115567778     5999999997      578 99999999999999988


Q ss_pred             ------CcEEE-----Eee--------eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecc---c---ccc
Q 009993          267 ------LKCLK-----VLR--------HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGA---H---VGN  318 (520)
Q Consensus       267 ------~~~~~-----~~~--------~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~---~---~~~  318 (520)
                            ++.+.     .+.        |...|.++.  +++ ++++++ |+.|++||+++++.+..+. .   |   ...
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~h~~~~~~  235 (397)
T 1sq9_A          158 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFE-SQHSMINNSNS  235 (397)
T ss_dssp             SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEE-CCC---CCCCC
T ss_pred             cccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEe-ccccccccCCc
Confidence                  65554     442        577788877  777 888888 8999999999999988886 5   7   899


Q ss_pred             eEEEEecCCCCEEEEEeCC---CeEEEEEcccCccccceeeeeeecC-------------CcCCEEEEEecC--CEEEEE
Q 009993          319 TKSLARSHTGDFLFTGGED---GAIHMYEIINDCTEANVLLVATWIP-------------HTGPVNSLAFEF--PWLVSA  380 (520)
Q Consensus       319 i~~l~~s~~~~~l~tg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~-------------h~~~v~~l~~~~--~~l~s~  380 (520)
                      |.+++|+|++.+|++++.|   |.|++||++++      ..+..+.+             |...|++++|+|  ++|+++
T Consensus       236 i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  309 (397)
T 1sq9_A          236 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA  309 (397)
T ss_dssp             EEEEEECSSTTEEEEEEEETTEEEEEEEETTTC------CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred             cceEEECCCCCEEEEEecCCCCceEEEEECCCC------cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEE
Confidence            9999999999999999999   99999999988      66777777             999999999975  699999


Q ss_pred             eCCCcEEEEeCCcccccCCCCCCCceeeeeec-----CCCcccccCcceeeEEEEecC------------CEEEEecCCC
Q 009993          381 AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEV-----EPPQRMLHGFECNLLSVDIGA------------DRIVCGGEEG  443 (520)
Q Consensus       381 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~------------~~l~sg~~Dg  443 (520)
                      +.||.|++||+++..............   ..     .........|...|.++.+++            .+|++|+.||
T Consensus       310 ~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg  386 (397)
T 1sq9_A          310 GWDGKLRFWDVKTKERITTLNMHCDDI---EIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR  386 (397)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCGGGC---SSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT
T ss_pred             eCCCeEEEEEcCCCceeEEEecccCcc---cchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCC
Confidence            999999999998753221111000000   00     000001112366666666544            4899999999


Q ss_pred             eEEEEeCCch
Q 009993          444 IVRIWNFSQA  453 (520)
Q Consensus       444 ~v~iwd~~~~  453 (520)
                      .|++|++.++
T Consensus       387 ~i~iw~~~~g  396 (397)
T 1sq9_A          387 SIRWFREAGG  396 (397)
T ss_dssp             EEEEEEEEC-
T ss_pred             cEEEEEcCCC
Confidence            9999999876

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.9e-36  Score=315.99  Aligned_cols=295  Identities=18%  Similarity=0.322  Sum_probs=224.7

Q ss_pred             hhhccccccEEEEEEccCC-CEEEEEeCCCeEEEEECCCC-----cEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEE
Q 009993          136 DVLYGHTEAVLTVFVLASA-KLLFTSGYDSIVRMWHLEDG-----FSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIH  207 (520)
Q Consensus       136 ~~l~~h~~~V~~l~~~~~~-~~l~sgs~dg~v~vwd~~~~-----~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~  207 (520)
                      ..+++|++.|++++|+|++ ++|+||+.|++|++|++.+.     .....+.+|...|.++.  +++++|++|+.||+|+
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~  455 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR  455 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence            4588999999999999864 79999999999999999763     34567889998887765  8999999999999999


Q ss_pred             EEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEe----eeccCEEE
Q 009993          208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL----RHSDWVYG  281 (520)
Q Consensus       208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~----~~~~~v~~  281 (520)
                      +||+.++.             ....+.+|...|.+++|  ++++|++|+.|++|++||..........    .|...|.+
T Consensus       456 vwd~~~~~-------------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~  522 (694)
T 3dm0_A          456 LWDLAAGV-------------STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSC  522 (694)
T ss_dssp             EEETTTTE-------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEE
T ss_pred             EEECCCCc-------------ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEE
Confidence            99997753             45677899999999999  6789999999999999998765443332    27788998


Q ss_pred             Ee--eCC--CEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceee
Q 009993          282 LA--PHD--TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL  356 (520)
Q Consensus       282 ~~--~~~--~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~  356 (520)
                      +.  +++  ..+++++ |+.|++||+++++....+. +|.+.|++++|+|++++|++|+.||.|++||++++      ..
T Consensus       523 ~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~------~~  595 (694)
T 3dm0_A          523 VRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA-GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG------KK  595 (694)
T ss_dssp             EEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT------EE
T ss_pred             EEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC------ce
Confidence            88  444  5788888 9999999999999888886 69999999999999999999999999999999988      55


Q ss_pred             eeeecCCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeE--EEEecC
Q 009993          357 VATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLL--SVDIGA  433 (520)
Q Consensus       357 ~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~  433 (520)
                      +..+.. ...|.+++|+| ..+++++.|+.|++||+++............................+...+.  ++++++
T Consensus       596 ~~~~~~-~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg  674 (694)
T 3dm0_A          596 LYSLEA-NSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG  674 (694)
T ss_dssp             EECCBC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTS
T ss_pred             EEEecC-CCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCC
Confidence            555544 46899999987 34555556777999999876433211110000000000000000111222344  455566


Q ss_pred             CEEEEecCCCeEEEEeCC
Q 009993          434 DRIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       434 ~~l~sg~~Dg~v~iwd~~  451 (520)
                      .+|++|+.||+|+||++.
T Consensus       675 ~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          675 STLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             SEEEEEETTSEEEEEEC-
T ss_pred             CEEEEEcCCCeEEEEecc
Confidence            799999999999999986

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.7e-36  Score=291.69  Aligned_cols=306  Identities=15%  Similarity=0.186  Sum_probs=232.7

Q ss_pred             hhhhccccccEEEEEEccCCCEE-EEEeC---CCeEEEEECCCCcEEEEe-CCCCceEEEEe--cC---CCEEEEEeCCC
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLL-FTSGY---DSIVRMWHLEDGFSIASS-KPLGCTIRAVA--AD---KKLLVAGGTDG  204 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l-~sgs~---dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~--~~---~~~l~sg~~dg  204 (520)
                      .+.+++|.+.|++++|+|++..+ ++|+.   |+.|++||+.+++..... .+|...|.++.  ++   +.+|++|+.||
T Consensus        11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred             hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence            34567899999999999998655 56665   999999999998765443 36777888776  66   69999999999


Q ss_pred             cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--------cCCEEEEEecCCeEEEEECCCCc-EEEEee-
Q 009993          205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--------DLTRIYSGSWDMTVRVWDRALLK-CLKVLR-  274 (520)
Q Consensus       205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--------~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~-  274 (520)
                      .|++||+.++.            .....+.+|...|.++.|        ++++|++++.||+|++||+++++ .+..+. 
T Consensus        91 ~i~iwd~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  158 (357)
T 3i2n_A           91 NLHIWNLEAPE------------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEP  158 (357)
T ss_dssp             CEEEECTTSCS------------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECC
T ss_pred             eEEEEeCCCCC------------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccc
Confidence            99999997752            245667899999999965        46799999999999999999886 666664 


Q ss_pred             e----ccCEEEEe------eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecC---CCCEEEEEeCCCeE
Q 009993          275 H----SDWVYGLA------PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH---TGDFLFTGGEDGAI  340 (520)
Q Consensus       275 ~----~~~v~~~~------~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~---~~~~l~tg~~dg~i  340 (520)
                      +    ...+.++.      +++.++++++ |+.|++||+++++.....  .|...|.+++|+|   ++.++++|+.||.|
T Consensus       159 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i  236 (357)
T 3i2n_A          159 VQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET--NIKNGVCSLEFDRKDISMNKLVATSLEGKF  236 (357)
T ss_dssp             CTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEESCSSSSCCEEEEEESTTEE
T ss_pred             cCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec--CCCCceEEEEcCCCCCCCCEEEEECCCCeE
Confidence            2    33787776      7899999999 899999999999886554  4889999999999   99999999999999


Q ss_pred             EEEEcccCccccceeeeeeecCCcCCEEEEEecCC---EEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcc
Q 009993          341 HMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP---WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQR  417 (520)
Q Consensus       341 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (520)
                      ++||++++...... ....+.+|...|++++|+|.   +|++|+.||.|++||+++........................
T Consensus       237 ~i~d~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~  315 (357)
T 3i2n_A          237 HVFDMRTQHPTKGF-ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQ  315 (357)
T ss_dssp             EEEEEEEEETTTEE-EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEE
T ss_pred             EEEeCcCCCcccce-eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceee
Confidence            99999987432211 11234589999999999873   799999999999999987543321111110000000012234


Q ss_pred             cccCcceeeEEEEecCC--EEE-EecCCCeEEEEeCCchHh
Q 009993          418 MLHGFECNLLSVDIGAD--RIV-CGGEEGIVRIWNFSQAFE  455 (520)
Q Consensus       418 ~~~~~~~~v~~~~~~~~--~l~-sg~~Dg~v~iwd~~~~~~  455 (520)
                      .+.+|...|.++.++++  +|+ +|+.||.|++||+.+...
T Consensus       316 ~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          316 NVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             EEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             ccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence            45677778887777654  676 899999999999987543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.6e-36  Score=289.85  Aligned_cols=265  Identities=17%  Similarity=0.237  Sum_probs=226.2

Q ss_pred             hhhhhhcCCCCCCCC-CCCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC----cE
Q 009993          106 EFYCERWGLPIASAP-LGAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG----FS  176 (520)
Q Consensus       106 ~~~~~~~~~~~~~~~-~~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~----~~  176 (520)
                      .+++..|. |+.... ..+.+...++|+    ..+..+..|...|.+++|+|++++|++|+.|+.|++|++.++    ..
T Consensus        57 ~v~~~~~s-~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~  135 (340)
T 1got_B           57 KIYAMHWG-TDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRV  135 (340)
T ss_dssp             CEEEEEEC-TTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEE
T ss_pred             ceEEEEEC-CCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCccee
Confidence            45677776 444433 334455668998    446678899999999999999999999999999999999876    34


Q ss_pred             EEEeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEE
Q 009993          177 IASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG  253 (520)
Q Consensus       177 ~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~  253 (520)
                      ...+.+|...+.++. .++..+++++.|++|++||+.++.             ....+.+|.+.|.+++|  ++.++++|
T Consensus       136 ~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~l~sg  202 (340)
T 1got_B          136 SRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ-------------QTTTFTGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             EEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTE-------------EEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCc-------------EEEEEcCCCCceEEEEECCCCCEEEEE
Confidence            566788998888776 334469999999999999997763             45677899999999999  67899999


Q ss_pred             ecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeec-ccccceEEEEecCCC
Q 009993          254 SWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG-AHVGNTKSLARSHTG  328 (520)
Q Consensus       254 s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~-~~~~~i~~l~~s~~~  328 (520)
                      +.|++|++||++++.+...+. |...|.++.  |+++++++++ |+.|++||+++++.+..+.. .+...|.+++|+|++
T Consensus       203 ~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g  282 (340)
T 1got_B          203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG  282 (340)
T ss_dssp             ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS
T ss_pred             eCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCC
Confidence            999999999999999998887 889999887  8899999999 99999999999988777642 233579999999999


Q ss_pred             CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEe
Q 009993          329 DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLID  390 (520)
Q Consensus       329 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd  390 (520)
                      .+|++|+.||.|++||+.+.      ..+..+.+|.++|++++|+|  .+|++|+.||.|+|||
T Consensus       283 ~~l~~g~~d~~i~vwd~~~~------~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          283 RLLLAGYDDFNCNVWDALKA------DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CEEEEECCCCeEEEEEcccC------cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            99999999999999999888      67788899999999999976  5999999999999997

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-35  Score=284.82  Aligned_cols=280  Identities=14%  Similarity=0.176  Sum_probs=236.4

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV  212 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~  212 (520)
                      ...|.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.++.  +++++|++++.||.|++||+.
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~  104 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS  104 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            456899999999999999999999999999999999999999999999999888776  889999999999999999997


Q ss_pred             cCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecC-----CeEEEEECCCCcEE-----------EEee
Q 009993          213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD-----MTVRVWDRALLKCL-----------KVLR  274 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d-----g~v~iwd~~~~~~~-----------~~~~  274 (520)
                      ++.             ....+. |...|.+++|  ++.++++++.+     +.|++||+.+....           ..+.
T Consensus       105 ~~~-------------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~  170 (369)
T 3zwl_B          105 NGQ-------------CVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII  170 (369)
T ss_dssp             TCC-------------EEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE
T ss_pred             CCc-------------EEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc
Confidence            763             233333 8889999999  77899999998     99999998765422           2222


Q ss_pred             -ecc--CEEEEe--eCCCEEEEEc-CCeEEEEECCC-CeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEccc
Q 009993          275 -HSD--WVYGLA--PHDTTVASTS-GSDVYIWDTNS-GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIN  347 (520)
Q Consensus       275 -~~~--~v~~~~--~~~~~l~~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~  347 (520)
                       +..  .+.++.  ++++++++++ |+.|++||+++ +..+..+. .|...|.+++|+|++.+|++++.||.|++||+++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  249 (369)
T 3zwl_B          171 THEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID-LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST  249 (369)
T ss_dssp             CCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe-cCCCceeEEEECCCCCEEEEecCCceEEEEECCC
Confidence             333  777776  8889999988 89999999999 67777776 6999999999999999999999999999999998


Q ss_pred             CccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCC--------------cEEEEeCCcccccCCCCCCCceeeeee
Q 009993          348 DCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDG--------------KLSLIDVRKLLRSGRPTSGKRVSRVIE  411 (520)
Q Consensus       348 ~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~  411 (520)
                      +      ..+..+. +...+.++.|+|  .++++++.++              .+++||+.+.                 
T Consensus       250 ~------~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-----------------  305 (369)
T 3zwl_B          250 L------QVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE-----------------  305 (369)
T ss_dssp             C------CEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC-----------------
T ss_pred             C------ceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC-----------------
Confidence            8      4555554 778999999976  7999999888              8999998773                 


Q ss_pred             cCCCcccccCcceeeEEEEec--CCEEEEecCCCeEEEEeCCchHh
Q 009993          412 VEPPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQAFE  455 (520)
Q Consensus       412 ~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~~~~~  455 (520)
                        .....+.+|...|.++.++  +.+|++|+.||.|++|+++++..
T Consensus       306 --~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  349 (369)
T 3zwl_B          306 --EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF  349 (369)
T ss_dssp             --CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred             --cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence              3344456777778777775  45999999999999999998654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.2e-36  Score=299.31  Aligned_cols=312  Identities=16%  Similarity=0.112  Sum_probs=242.0

Q ss_pred             ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEE-EEecCCCEEEEEeCCCcEEEEEcccCcceeeec
Q 009993          143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR-AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDI  221 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  221 (520)
                      ..+++++|+|++++|++|+.|+.|++||+.+++....+..|..... .+++++++|++|+.||.|++||+.++.      
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------  130 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL------  130 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCE------
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcc------
Confidence            3455789999999999999999999999998877666666643333 445899999999999999999987652      


Q ss_pred             cCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CC
Q 009993          222 SGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GS  295 (520)
Q Consensus       222 ~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~  295 (520)
                             ....+.+|...|.+++|  ++++|++|+.|++|++||+++++.+..+. |...|.++.  ++++++++++ |+
T Consensus       131 -------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~  203 (420)
T 3vl1_A          131 -------QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDG  203 (420)
T ss_dssp             -------EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTS
T ss_pred             -------eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCC
Confidence                   34455789999999999  67899999999999999999999888887 899999887  7899999998 99


Q ss_pred             eEEEEECCCCeeeEEeec--ccccc---------------------eEEEEecCCCCEEEEEeCCCeEEEEEcccCcccc
Q 009993          296 DVYIWDTNSGCLLTVVNG--AHVGN---------------------TKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA  352 (520)
Q Consensus       296 ~i~iwd~~~~~~~~~~~~--~~~~~---------------------i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~  352 (520)
                      .|++||+++++.+..+..  .|...                     +.+++|+|++++|++|+.||.|++||++++.   
T Consensus       204 ~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~---  280 (420)
T 3vl1_A          204 TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE---  280 (420)
T ss_dssp             CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC---
T ss_pred             cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc---
Confidence            999999999998888763  23334                     4445567899999999999999999999883   


Q ss_pred             ceeeeee-ecCCcCCEEEEEecCC---EEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccC-cceeeE
Q 009993          353 NVLLVAT-WIPHTGPVNSLAFEFP---WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG-FECNLL  427 (520)
Q Consensus       353 ~~~~~~~-~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~  427 (520)
                         .... ..+|...|++++|+|+   +|++|+.||.|++||+++..                  .+...+.+ |...+.
T Consensus       281 ---~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~------------------~~~~~~~~~~~~~v~  339 (420)
T 3vl1_A          281 ---QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE------------------CPVGEFLINEGTPIN  339 (420)
T ss_dssp             ---EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT------------------SCSEEEEESTTSCEE
T ss_pred             ---eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc------------------CchhhhhccCCCCce
Confidence               3333 3468899999999873   99999999999999998742                  11222232 455555


Q ss_pred             EEEec-CCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCC---cccccc
Q 009993          428 SVDIG-ADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGG---RTDQCS  492 (520)
Q Consensus       428 ~~~~~-~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~---~~~~~s  492 (520)
                      ++.+. +.+|++++.||.|++|++..+........ .............+..++|+|+|.   ++.++.
T Consensus       340 ~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g  407 (420)
T 3vl1_A          340 NVYFAAGALFVSSGFDTSIKLDIISDPESERPAIE-FETPTFLVSNDDAVSQFCYVSDDESNGEVLEVG  407 (420)
T ss_dssp             EEEEETTEEEEEETTTEEEEEEEECCTTCCSCEEC-TTSCEEECCSSCCCCEEEEECCSSSSCEEEEEE
T ss_pred             EEEeCCCCEEEEecCCccEEEEeccCCCCCcccee-ccCccEEccCCcceEEEEEccCCCCcceEEEEc
Confidence            55544 45999999999999999987533221111 111112223345678899999999   555544

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.8e-36  Score=284.02  Aligned_cols=267  Identities=16%  Similarity=0.206  Sum_probs=226.8

Q ss_pred             hhhhhhcCCCCCCCCC-CCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 009993          106 EFYCERWGLPIASAPL-GAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS  180 (520)
Q Consensus       106 ~~~~~~~~~~~~~~~~-~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~  180 (520)
                      .+.+..|+ |+....+ .+.+...++|+    ..++.+.+|..+|.+++|+|++++|++|+.|++|++||+.+++.+..+
T Consensus        15 ~V~~~~fs-p~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~   93 (304)
T 2ynn_A           15 RVKGIDFH-PTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF   93 (304)
T ss_dssp             CEEEEEEC-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ceEEEEEC-CCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEE
Confidence            35677787 5554433 34455668998    446788999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc---CCEEEEEec
Q 009993          181 KPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGSW  255 (520)
Q Consensus       181 ~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~  255 (520)
                      .+|...|.++.  |++.+|++|+.||+|++||+.++.            .....+.+|...|.+++|+   +..|++|+.
T Consensus        94 ~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~------------~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~  161 (304)
T 2ynn_A           94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW------------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (304)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT------------EEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred             eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc------------chhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence            99999888776  899999999999999999997652            2445678999999999994   478999999


Q ss_pred             CCeEEEEECCCCcEEEEee--eccCEEEEe----eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCC
Q 009993          256 DMTVRVWDRALLKCLKVLR--HSDWVYGLA----PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG  328 (520)
Q Consensus       256 dg~v~iwd~~~~~~~~~~~--~~~~v~~~~----~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~  328 (520)
                      |++|++||++++.....+.  +...+..+.    +++.++++++ |+.|++||+++++++..+. +|...|.+++|+|++
T Consensus       162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~h~~~v~~~~~~p~~  240 (304)
T 2ynn_A          162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTL  240 (304)
T ss_dssp             TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSS
T ss_pred             CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC-CCCCCEEEEEECCCC
Confidence            9999999998887666654  556777766    3678999998 9999999999999999987 699999999999999


Q ss_pred             CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCC----EEEEEeCCCcEEEEeCCc
Q 009993          329 DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP----WLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       329 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~l~s~s~dg~i~vwd~~~  393 (520)
                      .+|++|+.||+|++||+.+.      +...++..|...+.+++|+|.    ++++|+.|| +.+|++.+
T Consensus       241 ~~l~s~s~Dg~i~iWd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~  302 (304)
T 2ynn_A          241 PIIISGSEDGTLKIWNSSTY------KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN  302 (304)
T ss_dssp             SEEEEEETTSCEEEEETTTC------CEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred             CEEEEEcCCCeEEEEECCCC------ceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence            99999999999999999998      778889999999999998762    577777655 77888764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.7e-35  Score=280.45  Aligned_cols=272  Identities=21%  Similarity=0.284  Sum_probs=229.6

Q ss_pred             hccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEE---EEeC--CCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009993          138 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI---ASSK--PLGCTIRAVA--ADKKLLVAGGTDGFIHCWR  210 (520)
Q Consensus       138 l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~---~~~~--~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd  210 (520)
                      ..+|.+.|++++|+|++++|++++ ||.|++||+.++...   ..+.  +|...+.++.  +++++|++++.||.|++||
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d  125 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD  125 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred             eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence            348999999999999999999999 999999999877533   2222  6777777665  8999999999999999999


Q ss_pred             cccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eC
Q 009993          211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PH  285 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~  285 (520)
                      +.++.           ......+..|...|.+++|  +++++++++.||.|++||+++++.+..+. |...|.++.  ++
T Consensus       126 ~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~  194 (337)
T 1gxr_A          126 LAAPT-----------PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND  194 (337)
T ss_dssp             CCCC-------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             CCCCC-----------cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCC
Confidence            97653           1245567789999999999  67899999999999999999999888887 888999887  78


Q ss_pred             CCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCc
Q 009993          286 DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT  364 (520)
Q Consensus       286 ~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  364 (520)
                      ++.+++++ |+.|++||+++++.+..+.  +...+.+++|+|+++++++++.||.|++||+++..       ...+..|.
T Consensus       195 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-------~~~~~~~~  265 (337)
T 1gxr_A          195 GTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-------KYQLHLHE  265 (337)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-------EEEECCCS
T ss_pred             CCEEEEEecCCcEEEEECCCCceEeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC-------eEEEcCCc
Confidence            88999998 9999999999999888874  78899999999999999999999999999998872       34567899


Q ss_pred             CCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEe--cCCEEEEec
Q 009993          365 GPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GADRIVCGG  440 (520)
Q Consensus       365 ~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~  440 (520)
                      ..|++++|+|  ++|++++.||.|++||+.+....                    ....|...+.++.+  ++++|++++
T Consensus       266 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~--------------------~~~~~~~~v~~~~~s~~~~~l~~~~  325 (337)
T 1gxr_A          266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--------------------FQSKESSSVLSCDISVDDKYIVTGS  325 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE--------------------EEEECSSCEEEEEECTTSCEEEEEE
T ss_pred             cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE--------------------EEecCCCcEEEEEECCCCCEEEEec
Confidence            9999999975  69999999999999999874211                    11224445555555  556999999


Q ss_pred             CCCeEEEEeC
Q 009993          441 EEGIVRIWNF  450 (520)
Q Consensus       441 ~Dg~v~iwd~  450 (520)
                      .||.|++|++
T Consensus       326 ~dg~i~iw~~  335 (337)
T 1gxr_A          326 GDKKATVYEV  335 (337)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCeEEEEEE
Confidence            9999999996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.3e-35  Score=280.56  Aligned_cols=263  Identities=17%  Similarity=0.231  Sum_probs=221.6

Q ss_pred             hhhhhcCCCCCCCCCC--CCCCCcccHH---------HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 009993          107 FYCERWGLPIASAPLG--AGFSDDKSWK---------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF  175 (520)
Q Consensus       107 ~~~~~~~~~~~~~~~~--~~~~~~~~W~---------~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~  175 (520)
                      +.+..|. |.....+.  +.+...++|+         ..++.+++|...|.+++|+|++++|++|+.|++|++||+.+++
T Consensus        20 V~~l~~~-~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~   98 (319)
T 3frx_A           20 VTSLATS-AGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE   98 (319)
T ss_dssp             EEEEEEC-SSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             EEEEEcc-CCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence            4566666 43323333  3355568896         2356789999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC------
Q 009993          176 SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL------  247 (520)
Q Consensus       176 ~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~------  247 (520)
                      .+..+.+|...|.++.  +++.+|++|+.|++|++||+...              ....+.+|...|.++.+.+      
T Consensus        99 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~--------------~~~~~~~h~~~v~~~~~~~~~~~~~  164 (319)
T 3frx_A           99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--------------CLATLLGHNDWVSQVRVVPNEKADD  164 (319)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC--------------EEEEECCCSSCEEEEEECCC-----
T ss_pred             eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------------eEEEEeccCCcEEEEEEccCCCCCC
Confidence            9999999999998876  88999999999999999998542              4567789999999999933      


Q ss_pred             --CEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEE
Q 009993          248 --TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKS  321 (520)
Q Consensus       248 --~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~  321 (520)
                        ..+++++.|++|++||+++++....+. |...|.++.  |++++|++++ |+.|++||+.+++.+..+.  +...|.+
T Consensus       165 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~  242 (319)
T 3frx_A          165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS--AQDEVFS  242 (319)
T ss_dssp             -CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--CCSCEEE
T ss_pred             CccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEE
Confidence              379999999999999999998888776 899999887  8899999999 9999999999999988886  4578999


Q ss_pred             EEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeee--------cCCcCCEEEEEecC--CEEEEEeCCCcEEEEeC
Q 009993          322 LARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW--------IPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDV  391 (520)
Q Consensus       322 l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~--------~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~  391 (520)
                      ++|+|++.++++++.+ .+++|++...      ..+..+        ..|...+.+++|+|  ++|++|+.||.|++||+
T Consensus       243 ~~~sp~~~~la~~~~~-~i~v~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~  315 (319)
T 3frx_A          243 LAFSPNRYWLAAATAT-GIKVFSLDPQ------YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV  315 (319)
T ss_dssp             EEECSSSSEEEEEETT-EEEEEEETTE------EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             EEEcCCCCEEEEEcCC-CcEEEEeCcC------eeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEE
Confidence            9999999999988765 4999999876      233332        23567899999976  69999999999999998


Q ss_pred             Cc
Q 009993          392 RK  393 (520)
Q Consensus       392 ~~  393 (520)
                      .+
T Consensus       316 ~t  317 (319)
T 3frx_A          316 MT  317 (319)
T ss_dssp             EE
T ss_pred             ee
Confidence            76

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.6e-36  Score=290.61  Aligned_cols=266  Identities=16%  Similarity=0.171  Sum_probs=210.4

Q ss_pred             hhhhhhcCCCCCCCCCCCCCCCcccHH---------------HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEE
Q 009993          106 EFYCERWGLPIASAPLGAGFSDDKSWK---------------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWH  170 (520)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~W~---------------~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd  170 (520)
                      .+.+..|+ |+..+++..+....+.|+               .+.....+|.+.|++++|+|++. +++++.||+|+|||
T Consensus        44 ~V~~v~fS-pDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd  121 (357)
T 4g56_B           44 QIGAVRYR-RDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWE  121 (357)
T ss_dssp             EEEEEEEC-SSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC-
T ss_pred             CEEEEEEC-CCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEee
Confidence            45778888 776665544433334443               22334467999999999999986 55678899999999


Q ss_pred             CCCCcEEE----EeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEE
Q 009993          171 LEDGFSIA----SSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA  244 (520)
Q Consensus       171 ~~~~~~~~----~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  244 (520)
                      +.+++...    ...+|...|.++.  |++++|++|+.||.|++||+.++.             ....+.+|...|++++
T Consensus       122 ~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~-------------~~~~~~~h~~~v~~v~  188 (357)
T 4g56_B          122 ILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA-------------VLKSYNAHSSEVNCVA  188 (357)
T ss_dssp             -------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE-------------EEEEECCCSSCEEEEE
T ss_pred             ccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-------------EEEEEcCCCCCEEEEE
Confidence            99886543    3357888887765  899999999999999999997753             5667789999999999


Q ss_pred             E--cC-CEEEEEecCCeEEEEECCCCcEEEEee---eccCEEEEe--eC-CCEEEEEc-CCeEEEEECCCCeeeEEeecc
Q 009993          245 L--DL-TRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA--PH-DTTVASTS-GSDVYIWDTNSGCLLTVVNGA  314 (520)
Q Consensus       245 ~--~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~--~~-~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~  314 (520)
                      |  ++ ..+++++.||+|++||+++++....+.   +...+.++.  |+ +.++++++ |+.|++||+++++.+..+. +
T Consensus       189 ~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~-~  267 (357)
T 4g56_B          189 ACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA-V  267 (357)
T ss_dssp             ECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC-C
T ss_pred             EccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe-c
Confidence            9  33 579999999999999999998776654   667788887  44 56888888 8999999999999998887 6


Q ss_pred             cccceEEEEecCCC-CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEe
Q 009993          315 HVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLID  390 (520)
Q Consensus       315 ~~~~i~~l~~s~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd  390 (520)
                      |...|++++|+|++ .+|++|+.||+|+|||++++      +.+. ..+|.+.|++++|+|   .+|++|+.||+|++|+
T Consensus       268 ~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~------~~~~-~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~  340 (357)
T 4g56_B          268 HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS------EVFR-DLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH  340 (357)
T ss_dssp             CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC------EEEE-ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC------cEeE-ECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence            99999999999987 57999999999999999887      4444 348999999999976   5999999999999999


Q ss_pred             CCcc
Q 009993          391 VRKL  394 (520)
Q Consensus       391 ~~~~  394 (520)
                      +.+.
T Consensus       341 ~~~~  344 (357)
T 4g56_B          341 LPSE  344 (357)
T ss_dssp             CC--
T ss_pred             CCCC
Confidence            9764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-36  Score=301.18  Aligned_cols=318  Identities=14%  Similarity=0.141  Sum_probs=247.2

Q ss_pred             ccccEEEEEEccCCC-EEEEE----------eCCCeEEEEECCCCc---EEEEeCCCCceEEEEe--cCCCEEEEEeCCC
Q 009993          141 HTEAVLTVFVLASAK-LLFTS----------GYDSIVRMWHLEDGF---SIASSKPLGCTIRAVA--ADKKLLVAGGTDG  204 (520)
Q Consensus       141 h~~~V~~l~~~~~~~-~l~sg----------s~dg~v~vwd~~~~~---~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg  204 (520)
                      +...|.+++|+|+++ +|++|          +.|+.|++||+.++.   .+..+ .|...|.++.  +++.+|++|+.||
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg   89 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG   89 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence            456789999999987 99999          899999999999876   33333 4677777665  8999999999999


Q ss_pred             cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--c-CCEEEEEecCCeEEEEECCCCc------EEEEe--
Q 009993          205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D-LTRIYSGSWDMTVRVWDRALLK------CLKVL--  273 (520)
Q Consensus       205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~-~~~l~s~s~dg~v~iwd~~~~~------~~~~~--  273 (520)
                      .|++||+.+..         ........+.+|...|.+++|  + +++|++++.||+|++||+.+++      ....+  
T Consensus        90 ~v~vw~~~~~~---------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  160 (416)
T 2pm9_A           90 SLELYSTNEAN---------NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ  160 (416)
T ss_dssp             CEEEECCSSTT---------SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC
T ss_pred             eEEEeeccccc---------ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccc
Confidence            99999987621         012256677889999999999  3 6899999999999999999886      33333  


Q ss_pred             --eeccCEEEEe--eC-CCEEEEEc-CCeEEEEECCCCeeeEEeeccc-----ccceEEEEecCCC-CEEEEEeCCC---
Q 009993          274 --RHSDWVYGLA--PH-DTTVASTS-GSDVYIWDTNSGCLLTVVNGAH-----VGNTKSLARSHTG-DFLFTGGEDG---  338 (520)
Q Consensus       274 --~~~~~v~~~~--~~-~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~-----~~~i~~l~~s~~~-~~l~tg~~dg---  338 (520)
                        .|...|.++.  ++ +.++++++ |+.|++||+++++.+..+...+     ...+.+++|+|++ .++++++.|+   
T Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~  240 (416)
T 2pm9_A          161 SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDP  240 (416)
T ss_dssp             SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSC
T ss_pred             ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCc
Confidence              3778888887  66 67899988 9999999999999988886321     7899999999997 6899999999   


Q ss_pred             eEEEEEcccCccccceeeeeeec-CCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCC
Q 009993          339 AIHMYEIINDCTEANVLLVATWI-PHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEP  414 (520)
Q Consensus       339 ~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  414 (520)
                      .|++||+++..     .++..+. +|...|++++|+|   .+|++++.||.|++||+++.                   .
T Consensus       241 ~i~~~d~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~-------------------~  296 (416)
T 2pm9_A          241 SILIWDLRNAN-----TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA-------------------E  296 (416)
T ss_dssp             CCCEEETTSTT-----SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC-------------------C
T ss_pred             eEEEEeCCCCC-----CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC-------------------c
Confidence            99999999863     3566677 8999999999965   69999999999999999873                   2


Q ss_pred             CcccccCcceeeEEEEec--C-CEEEEecCCCeEEEEeCCchHhHHHHhh--------------hhc-----------cc
Q 009993          415 PQRMLHGFECNLLSVDIG--A-DRIVCGGEEGIVRIWNFSQAFEIERRAR--------------ALR-----------GI  466 (520)
Q Consensus       415 ~~~~~~~~~~~v~~~~~~--~-~~l~sg~~Dg~v~iwd~~~~~~~~~~~~--------------~~~-----------~~  466 (520)
                      ....+.+|...+.++.++  + .+|++++.||.|++|++.+.........              ...           ..
T Consensus       297 ~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (416)
T 2pm9_A          297 QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL  376 (416)
T ss_dssp             EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC
T ss_pred             cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc
Confidence            333445666666665554  4 5999999999999999987653221100              000           00


Q ss_pred             ccchhhhhccceeeeccCCCcccccc
Q 009993          467 RLENRMRRRKLQTEMSSKGGRTDQCS  492 (520)
Q Consensus       467 ~~~~~~~~~~~~~~~s~~g~~~~~~s  492 (520)
                      .......+....++|+|||+.+++++
T Consensus       377 ~~~~~~~~~~~~~~~s~dg~~la~~~  402 (416)
T 2pm9_A          377 QAPTWYGEPSPAAHWAFGGKLVQITP  402 (416)
T ss_dssp             CCCSTTCCCSCCCEEETTTEEECBCT
T ss_pred             cCCccccCCccceEEeeCCeEEEEeC
Confidence            11122445556899999999999887

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.3e-34  Score=325.02  Aligned_cols=330  Identities=15%  Similarity=0.215  Sum_probs=261.9

Q ss_pred             hhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEccc
Q 009993          136 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVE  213 (520)
Q Consensus       136 ~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~  213 (520)
                      ..+.+|.+.|++++|+|+|++|++|+.||+|++||+.+++.+..+.+|...|.++.  |++++|++|+.||.|++||+.+
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~  688 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT  688 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence            35679999999999999999999999999999999999999999999999988766  8999999999999999999987


Q ss_pred             CcceeeeccCCccccceEEeccCCCCeEEEEE----cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCC
Q 009993          214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHD  286 (520)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~  286 (520)
                      +.             ....+.+|...|.+++|    ++..+++|+.|++|++||+.+++++..+. |...|.++.  +++
T Consensus       689 ~~-------------~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~  755 (1249)
T 3sfz_A          689 GK-------------LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD  755 (1249)
T ss_dssp             CC-------------EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSST
T ss_pred             Cc-------------eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCC
Confidence            63             55667789999999999    23578899999999999999999888876 888888877  888


Q ss_pred             CEEEEEc-CCeEEEEECCCCeeeEEe------------------------------------------------------
Q 009993          287 TTVASTS-GSDVYIWDTNSGCLLTVV------------------------------------------------------  311 (520)
Q Consensus       287 ~~l~~~~-d~~i~iwd~~~~~~~~~~------------------------------------------------------  311 (520)
                      +++++++ ||.|++||+.++.....+                                                      
T Consensus       756 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~  835 (1249)
T 3sfz_A          756 ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEI  835 (1249)
T ss_dssp             TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEE
T ss_pred             CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEE
Confidence            8999888 899999998776543332                                                      


Q ss_pred             ecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEE
Q 009993          312 NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLI  389 (520)
Q Consensus       312 ~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vw  389 (520)
                      ..+|...+.+++|+|++.++++++.||.|++||+.++      ..+..+.+|.+.|++++|+|  .+|++++.||.|++|
T Consensus       836 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~------~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw  909 (1249)
T 3sfz_A          836 HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR------LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW  909 (1249)
T ss_dssp             ECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC------ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEE
Confidence            2257788999999999999999999999999999988      77888999999999999976  699999999999999


Q ss_pred             eCCcccccCCCCCCCcee--------------------eeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEe
Q 009993          390 DVRKLLRSGRPTSGKRVS--------------------RVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWN  449 (520)
Q Consensus       390 d~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd  449 (520)
                      |+.+..............                    ....................+++++++++++|+.||.|++|+
T Consensus       910 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d  989 (1249)
T 3sfz_A          910 ETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIE  989 (1249)
T ss_dssp             EHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEE
T ss_pred             EccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEE
Confidence            987543222111110000                    000001111111223344556666777999999999999999


Q ss_pred             CCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccccc
Q 009993          450 FSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA  494 (520)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~  494 (520)
                      +.++.....          ...+...+..++|+|+|+.+++++.+
T Consensus       990 ~~~~~~~~~----------~~~h~~~v~~l~~s~dg~~l~s~~~d 1024 (1249)
T 3sfz_A          990 LPNNRVFSS----------GVGHKKAVRHIQFTADGKTLISSSED 1024 (1249)
T ss_dssp             TTTTSCEEE----------CCCCSSCCCCEEECSSSSCEEEECSS
T ss_pred             cCCCceeee----------cccCCCceEEEEECCCCCEEEEEcCC
Confidence            987643221          12334557889999999999988743

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.6e-35  Score=287.00  Aligned_cols=277  Identities=11%  Similarity=0.038  Sum_probs=217.0

Q ss_pred             hhhhccccccEEEEEEccCC-CEEEEEeCCCeEEEEECCCCcEEEEeC--CCCceEEEEe--c-CCCEEEEEeCCCcEEE
Q 009993          135 IDVLYGHTEAVLTVFVLASA-KLLFTSGYDSIVRMWHLEDGFSIASSK--PLGCTIRAVA--A-DKKLLVAGGTDGFIHC  208 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~-~~l~sgs~dg~v~vwd~~~~~~~~~~~--~~~~~v~~~~--~-~~~~l~sg~~dg~i~v  208 (520)
                      .+.+.+|.+.|++++|+|++ ++|++|+.||.|++||+.+++....+.  +|...|.++.  | ++.+|++++.||.|++
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i  145 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL  145 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred             EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence            55778999999999999999 999999999999999999888777765  6888888776  6 6789999999999999


Q ss_pred             EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--
Q 009993          209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--  283 (520)
Q Consensus       209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--  283 (520)
                      ||+.+...           .......+|...|.+++|  ++.++++|+.|+.|++||+ +++.+..+. |...|.++.  
T Consensus       146 wd~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~  213 (383)
T 3ei3_B          146 RDFSGSVI-----------QVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFN  213 (383)
T ss_dssp             EETTSCEE-----------EEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEEC
T ss_pred             EECCCCce-----------EEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEEC
Confidence            99875321           111122345588999999  7789999999999999999 566777766 899999988  


Q ss_pred             eCCC-EEEEEc-CCeEEEEECCC----CeeeEEeecccccceEEEEecC-CCCEEEEEeCCCeEEEEEcccCccccceee
Q 009993          284 PHDT-TVASTS-GSDVYIWDTNS----GCLLTVVNGAHVGNTKSLARSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLL  356 (520)
Q Consensus       284 ~~~~-~l~~~~-d~~i~iwd~~~----~~~~~~~~~~~~~~i~~l~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~  356 (520)
                      +++. ++++++ |+.|++||+++    +..+..+  +|...|.+++|+| ++.+|++++.|+.|++||++++..      
T Consensus       214 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~------  285 (383)
T 3ei3_B          214 PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK------  285 (383)
T ss_dssp             SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS------
T ss_pred             CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc------
Confidence            7777 888888 99999999998    5666666  4999999999999 999999999999999999998743      


Q ss_pred             eeeecC-------CcC----------CEEEEEecC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCccc
Q 009993          357 VATWIP-------HTG----------PVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRM  418 (520)
Q Consensus       357 ~~~~~~-------h~~----------~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (520)
                      ...+.+       |..          .+..++|+| ..+ +|+.||.|++||+.++..                   ...
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~-------------------~~~  345 (383)
T 3ei3_B          286 PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGL-------------------VHQ  345 (383)
T ss_dssp             CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCE-------------------EEE
T ss_pred             ccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCce-------------------eee
Confidence            223322       222          344455543 122 777999999999987422                   222


Q ss_pred             ccC--cce--eeEEEEecCCEEEEecCCCeEEEEeCCc
Q 009993          419 LHG--FEC--NLLSVDIGADRIVCGGEEGIVRIWNFSQ  452 (520)
Q Consensus       419 ~~~--~~~--~v~~~~~~~~~l~sg~~Dg~v~iwd~~~  452 (520)
                      +.+  |..  .+.++++++.+|++|+ ||.|++||+++
T Consensus       346 l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          346 LRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             ECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             ecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            222  233  3345666777999997 99999999975

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-36  Score=298.21  Aligned_cols=310  Identities=11%  Similarity=0.143  Sum_probs=228.2

Q ss_pred             cHH---Hhhhhh-ccccccEEEEEEcc-CCCEEEEEeCCCeEEEEECCC---Cc---EEEEeCCCCceEEEEe--cCCCE
Q 009993          130 SWK---ELIDVL-YGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLED---GF---SIASSKPLGCTIRAVA--ADKKL  196 (520)
Q Consensus       130 ~W~---~~~~~l-~~h~~~V~~l~~~~-~~~~l~sgs~dg~v~vwd~~~---~~---~~~~~~~~~~~v~~~~--~~~~~  196 (520)
                      .|+   +++..+ ++|.+.|++++|+| ++++|++|+.||+|+|||+.+   +.   ....+ .|...|.++.  +++.+
T Consensus        47 ~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~  125 (437)
T 3gre_A           47 MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDA  125 (437)
T ss_dssp             GGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSE
T ss_pred             cccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCE
Confidence            365   456667 89999999999999 999999999999999999876   43   22222 4777787766  88999


Q ss_pred             EEEEeCCCcEEEEEcc---cCcceeeeccCCccccceEEecc--CCCCeEEEEE----cCCEEEEEecCCeEEEEECCCC
Q 009993          197 LVAGGTDGFIHCWRAV---EVLPHLFDISGSEKQNTQFRLWE--HEGPITSLAL----DLTRIYSGSWDMTVRVWDRALL  267 (520)
Q Consensus       197 l~sg~~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~----~~~~l~s~s~dg~v~iwd~~~~  267 (520)
                      |++|+.||.|++||+.   ++..... ....  ......+..  +...+.++.+    ++.++++|+.|++|++||++++
T Consensus       126 l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  202 (437)
T 3gre_A          126 FAVSSKDGQIIVLKVNHYQQESEVKF-LNCE--CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL  202 (437)
T ss_dssp             EEEEETTSEEEEEEEEEEEETTEEEE-EEEE--EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC
T ss_pred             EEEEeCCCEEEEEEeccccCCceeec-cccc--eeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence            9999999999999995   3321110 0000  011111222  6677888885    4789999999999999999999


Q ss_pred             cEEEEee---eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEec----CCCCEEEEEeCC
Q 009993          268 KCLKVLR---HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARS----HTGDFLFTGGED  337 (520)
Q Consensus       268 ~~~~~~~---~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s----~~~~~l~tg~~d  337 (520)
                      +++..+.   |...|.++.  +++.++++++ |+.|++||+++++.+..+..+|...|.+++|+    |++.+|++|+.|
T Consensus       203 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~d  282 (437)
T 3gre_A          203 ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK  282 (437)
T ss_dssp             CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTT
T ss_pred             eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCC
Confidence            9998886   678999988  7899999999 99999999999999988865688899999555    567899999999


Q ss_pred             CeEEEEEcccCccccceeeeeeec------------------------C--CcCCEEEEEecC-CEEEEEeCCCcEEEEe
Q 009993          338 GAIHMYEIINDCTEANVLLVATWI------------------------P--HTGPVNSLAFEF-PWLVSAAGDGKLSLID  390 (520)
Q Consensus       338 g~i~iwd~~~~~~~~~~~~~~~~~------------------------~--h~~~v~~l~~~~-~~l~s~s~dg~i~vwd  390 (520)
                      |.|++||++++.      .+..+.                        +  |...|++++|++ .+|++|+.||.|++||
T Consensus       283 g~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd  356 (437)
T 3gre_A          283 TFLTIWNFVKGH------CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFS  356 (437)
T ss_dssp             EEEEEEETTTTE------EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEE
T ss_pred             CcEEEEEcCCCc------EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEE
Confidence            999999998873      332222                        2  677789999975 5899999999999999


Q ss_pred             CCcccccCCCCCCC----ceeeee--------------ecCCCcccccCcceeeEEEEecCC----EEEEecCCCeEEEE
Q 009993          391 VRKLLRSGRPTSGK----RVSRVI--------------EVEPPQRMLHGFECNLLSVDIGAD----RIVCGGEEGIVRIW  448 (520)
Q Consensus       391 ~~~~~~~~~~~~~~----~~~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~----~l~sg~~Dg~v~iw  448 (520)
                      +.++..........    ......              ...........|...|.++.+.+.    +|++|+.||.|+||
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw  436 (437)
T 3gre_A          357 LNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIF  436 (437)
T ss_dssp             TTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEE
T ss_pred             CCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEe
Confidence            99875443222110    000000              000111223347777777776543    99999999999999


Q ss_pred             e
Q 009993          449 N  449 (520)
Q Consensus       449 d  449 (520)
                      +
T Consensus       437 ~  437 (437)
T 3gre_A          437 Q  437 (437)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6.9e-35  Score=288.57  Aligned_cols=299  Identities=13%  Similarity=0.168  Sum_probs=239.6

Q ss_pred             CCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEE
Q 009993          125 FSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLV  198 (520)
Q Consensus       125 ~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~  198 (520)
                      +...++|+    +....+.+| ..+....|+|++++|++|+.||.|++||+.+++....+.+|...|.++.  |++++|+
T Consensus        77 d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  155 (420)
T 3vl1_A           77 DGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALI  155 (420)
T ss_dssp             TTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEE
T ss_pred             CCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEE
Confidence            44557777    445566666 5555667899999999999999999999999999888889999988776  8999999


Q ss_pred             EEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--
Q 009993          199 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--  274 (520)
Q Consensus       199 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--  274 (520)
                      +|+.||.|++||+.++.             ....+.+|...|.+++|  ++++|++++.||+|++||+++++.+..+.  
T Consensus       156 s~s~d~~i~iwd~~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~  222 (420)
T 3vl1_A          156 SSSQDMQLKIWSVKDGS-------------NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRK  222 (420)
T ss_dssp             EEETTSEEEEEETTTCC-------------CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBT
T ss_pred             EEeCCCeEEEEeCCCCc-------------CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecC
Confidence            99999999999997753             45567789999999999  67899999999999999999999988876  


Q ss_pred             --eccCEEEEe-----------------------eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCC
Q 009993          275 --HSDWVYGLA-----------------------PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG  328 (520)
Q Consensus       275 --~~~~v~~~~-----------------------~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~  328 (520)
                        +...+.++.                       ++++++++++ ||.|++||+++++.+..+..+|...|.+++|+|++
T Consensus       223 ~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  302 (420)
T 3vl1_A          223 ENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNN  302 (420)
T ss_dssp             TBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSC
T ss_pred             CCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCC
Confidence              344454443                       5788999988 99999999999998888877789999999999999


Q ss_pred             C-EEEEEeCCCeEEEEEcccCccccceeeeeeecC-CcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCc
Q 009993          329 D-FLFTGGEDGAIHMYEIINDCTEANVLLVATWIP-HTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKR  405 (520)
Q Consensus       329 ~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  405 (520)
                      . +|++|+.||.|++||++++.     .++..+.+ |...|+++.+.+ .+|++++.||.|++||+.........     
T Consensus       303 ~~~l~~g~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~-----  372 (420)
T 3vl1_A          303 ANYIYAGYENGMLAQWDLRSPE-----CPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPA-----  372 (420)
T ss_dssp             TTEEEEEETTSEEEEEETTCTT-----SCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCE-----
T ss_pred             CCEEEEEeCCCeEEEEEcCCCc-----CchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccc-----
Confidence            9 99999999999999999873     23555555 778899998854 69999999999999999874222110     


Q ss_pred             eeeeeecCCCcccccCcceee--EEEEecCC---EEEEecCCCeEEEEeCCc
Q 009993          406 VSRVIEVEPPQRMLHGFECNL--LSVDIGAD---RIVCGGEEGIVRIWNFSQ  452 (520)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~---~l~sg~~Dg~v~iwd~~~  452 (520)
                          .. ......+.+|...+  .++++++.   .+++++.+|.+.+|++++
T Consensus       373 ----~~-~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          373 ----IE-FETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             ----EC-TTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             ----ee-ccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence                00 11111233444444  45556666   688888899999999975

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.2e-34  Score=301.15  Aligned_cols=322  Identities=15%  Similarity=0.163  Sum_probs=250.1

Q ss_pred             CcccHH--HhhhhhccccccEEEEEEccCCC-EEEEEeCCCeEEEEECCCCcEEEEeCCCCc---eEEEEe--cC-CCEE
Q 009993          127 DDKSWK--ELIDVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLGC---TIRAVA--AD-KKLL  197 (520)
Q Consensus       127 ~~~~W~--~~~~~l~~h~~~V~~l~~~~~~~-~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~---~v~~~~--~~-~~~l  197 (520)
                      ....|+  +....+.+|.+.|++++|+|+++ ++++|+.|+.|++||+.+++.+..+.+|..   .|.++.  |+ +++|
T Consensus       143 ~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  222 (615)
T 1pgu_A          143 VFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFV  222 (615)
T ss_dssp             EEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEE
T ss_pred             EEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEE
Confidence            346677  45677899999999999999998 899999999999999999999999999988   787765  88 9999


Q ss_pred             EEEeCCCcEEEEEcccCcceeeeccCCccccceEEe-c---cCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEE
Q 009993          198 VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL-W---EHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKV  272 (520)
Q Consensus       198 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~---~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~  272 (520)
                      ++++.||.|++||+.++.             ....+ .   +|...|.+++| ++.++++++.|+.|++||+++++.+..
T Consensus       223 ~~~~~dg~i~vwd~~~~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~  289 (615)
T 1pgu_A          223 ITVGSDRKISCFDGKSGE-------------FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQK  289 (615)
T ss_dssp             EEEETTCCEEEEETTTCC-------------EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             EEEeCCCeEEEEECCCCC-------------EeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence            999999999999997763             34444 4   89999999999 889999999999999999999999888


Q ss_pred             eeec-----cCEEEEe-eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCC------------------
Q 009993          273 LRHS-----DWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT------------------  327 (520)
Q Consensus       273 ~~~~-----~~v~~~~-~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~------------------  327 (520)
                      +...     ..+.++. +++.++++++ ++.|++||+.+++.+..+. +|...|.+++| |+                  
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~  367 (615)
T 1pgu_A          290 WTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTIS-GHNKGITALTV-NPLISGSYDGRIMEWSSSSM  367 (615)
T ss_dssp             EECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEEC-CCSSCEEEEET-TTTEEEETTSCEEETTTTEE
T ss_pred             EcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEe-CCCCCEEEEEe-cCcEEECCCCeEEEEEchhh
Confidence            8733     5666666 6888999888 9999999999888777765 45555555554 33                  


Q ss_pred             ---------------CCEEEEEeCCCeEEEEEcccCcc------------------------------------------
Q 009993          328 ---------------GDFLFTGGEDGAIHMYEIINDCT------------------------------------------  350 (520)
Q Consensus       328 ---------------~~~l~tg~~dg~i~iwd~~~~~~------------------------------------------  350 (520)
                                     +..+++++.|+.|++||+.+...                                          
T Consensus       368 ~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (615)
T 1pgu_A          368 HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS  447 (615)
T ss_dssp             ECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred             cCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCC
Confidence                           55566666666666665543210                                          


Q ss_pred             ------------------ccce--------eee-eeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCC
Q 009993          351 ------------------EANV--------LLV-ATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPT  401 (520)
Q Consensus       351 ------------------~~~~--------~~~-~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~  401 (520)
                                        ...+        ... ..+.+|...|++++|+|  ++|++++.||.|++||+.++..     
T Consensus       448 ~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~-----  522 (615)
T 1pgu_A          448 PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV-----  522 (615)
T ss_dssp             CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----
T ss_pred             CceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcc-----
Confidence                              0000        111 55678999999999976  7999999999999999987422     


Q ss_pred             CCCceeeeeecCCCcccccC-cceeeEEEEe------------cCCEEEEecCCCeEEEEeCCchH-hHHHHhhhhcccc
Q 009993          402 SGKRVSRVIEVEPPQRMLHG-FECNLLSVDI------------GADRIVCGGEEGIVRIWNFSQAF-EIERRARALRGIR  467 (520)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~------------~~~~l~sg~~Dg~v~iwd~~~~~-~~~~~~~~~~~~~  467 (520)
                                    ...+.+ |...|.++.+            ++.+|++|+.||.|++||+.++. .+.          
T Consensus       523 --------------~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~----------  578 (615)
T 1pgu_A          523 --------------KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK----------  578 (615)
T ss_dssp             --------------EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEE----------
T ss_pred             --------------eeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceech----------
Confidence                          222344 6677777776            45599999999999999998763 211          


Q ss_pred             cchhhhhccceeeeccCCCccccccc
Q 009993          468 LENRMRRRKLQTEMSSKGGRTDQCSV  493 (520)
Q Consensus       468 ~~~~~~~~~~~~~~s~~g~~~~~~s~  493 (520)
                      ....+...+..++|+|+|+ +++++.
T Consensus       579 ~~~~h~~~v~~l~~s~~~~-l~s~~~  603 (615)
T 1pgu_A          579 ALNAHKDGVNNLLWETPST-LVSSGA  603 (615)
T ss_dssp             ETTSSTTCEEEEEEEETTE-EEEEET
T ss_pred             hhhcCccceEEEEEcCCCC-eEEecC
Confidence            1223355688999999999 887764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.5e-35  Score=287.89  Aligned_cols=266  Identities=20%  Similarity=0.297  Sum_probs=218.5

Q ss_pred             hhhhhhcCCCCCCCCCCCCCCCcccHH----Hhhhhhcccc------------------ccEEEEEEccCCCEEEEEeCC
Q 009993          106 EFYCERWGLPIASAPLGAGFSDDKSWK----ELIDVLYGHT------------------EAVLTVFVLASAKLLFTSGYD  163 (520)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~W~----~~~~~l~~h~------------------~~V~~l~~~~~~~~l~sgs~d  163 (520)
                      .++|..|+ |+............++|+    +.+..+.+|.                  ..|++++|+|+|++|++|+.|
T Consensus        66 ~V~~v~fs-pdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d  144 (393)
T 1erj_A           66 VVCCVKFS-NDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAED  144 (393)
T ss_dssp             CCCEEEEC-TTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEEEC-CCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCC
Confidence            35677787 565555444445557776    2333444443                  349999999999999999999


Q ss_pred             CeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeE
Q 009993          164 SIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPIT  241 (520)
Q Consensus       164 g~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  241 (520)
                      ++|++||+.+++.+..+.+|...|.++.  +++.+|++|+.|++|++||+.++.             ....+ .+...+.
T Consensus       145 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~-------------~~~~~-~~~~~v~  210 (393)
T 1erj_A          145 RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-------------CSLTL-SIEDGVT  210 (393)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-------------EEEEE-ECSSCEE
T ss_pred             CeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe-------------eEEEE-EcCCCcE
Confidence            9999999999999999999999888776  899999999999999999998763             22222 3667899


Q ss_pred             EEEE---cCCEEEEEecCCeEEEEECCCCcEEEEe--------eeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCe-
Q 009993          242 SLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVL--------RHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGC-  306 (520)
Q Consensus       242 ~l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~--------~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~-  306 (520)
                      ++++   ++.++++|+.|++|++||+++++.+..+        .|...|.++.  ++++++++++ |+.|++||+++.. 
T Consensus       211 ~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~  290 (393)
T 1erj_A          211 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN  290 (393)
T ss_dssp             EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCC
Confidence            9998   5689999999999999999999887766        2778899887  7899999999 9999999997642 


Q ss_pred             -----------eeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-
Q 009993          307 -----------LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-  374 (520)
Q Consensus       307 -----------~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-  374 (520)
                                 +...+. +|...|.+++|+|++.+|++|+.||.|++||+.++      .++..+.+|...|.+++|++ 
T Consensus       291 ~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~------~~~~~l~~h~~~v~~v~~~~~  363 (393)
T 1erj_A          291 KSDSKTPNSGTCEVTYI-GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG------NPLLMLQGHRNSVISVAVANG  363 (393)
T ss_dssp             ----------CEEEEEE-CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEECSS
T ss_pred             cccccCCCCCcceEEEe-cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC------eEEEEECCCCCCEEEEEecCC
Confidence                       334444 69999999999999999999999999999999988      67888999999999999964 


Q ss_pred             -------CEEEEEeCCCcEEEEeCCc
Q 009993          375 -------PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       375 -------~~l~s~s~dg~i~vwd~~~  393 (520)
                             ++|++|+.||+|++|++..
T Consensus       364 ~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          364 SSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             CTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             cCcCCCCCEEEEECCCCcEEECcccc
Confidence                   5899999999999999875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.3e-36  Score=294.80  Aligned_cols=298  Identities=12%  Similarity=0.073  Sum_probs=219.9

Q ss_pred             hccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC--cEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEccc
Q 009993          138 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG--FSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVE  213 (520)
Q Consensus       138 l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~--~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~  213 (520)
                      ++.|.++|++++|+|++++|++|+.|+.|++||+.++  +.+..+.+|...|.++.  +++++|++|+.||.|++||+.+
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence            4557789999999999999999999999999999988  77888899999888776  8899999999999999999977


Q ss_pred             CcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcE---EEEee--eccCEEEEe--e
Q 009993          214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKC---LKVLR--HSDWVYGLA--P  284 (520)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~---~~~~~--~~~~v~~~~--~  284 (520)
                      +.          .......+.+|...|.+++|  ++++|++++.|++|++||+++++.   ...+.  |...|.++.  +
T Consensus        87 ~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~  156 (377)
T 3dwl_C           87 DG----------TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP  156 (377)
T ss_dssp             ------------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT
T ss_pred             CC----------ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC
Confidence            53          12245667789999999999  678999999999999999998873   55554  889999988  7


Q ss_pred             CCCEEEEEc-CCeEEEEECC------------------CCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEc
Q 009993          285 HDTTVASTS-GSDVYIWDTN------------------SGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI  345 (520)
Q Consensus       285 ~~~~l~~~~-d~~i~iwd~~------------------~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~  345 (520)
                      +++++++++ |+.|++||++                  .++.+..+  +|...|++++|+|++++|++|+.||.|++||+
T Consensus       157 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~  234 (377)
T 3dwl_C          157 NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYP  234 (377)
T ss_dssp             TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEE
T ss_pred             CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            889999998 9999999985                  34455555  69999999999999999999999999999999


Q ss_pred             ccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccC-C-CCCCCc----------------
Q 009993          346 INDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSG-R-PTSGKR----------------  405 (520)
Q Consensus       346 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~-~-~~~~~~----------------  405 (520)
                      .++...  ...+..+.+|..+|++++|+|  .+|++|+.|+.+ +|+........ . ......                
T Consensus       235 ~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (377)
T 3dwl_C          235 SAPEQP--PRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREE  311 (377)
T ss_dssp             CSTTSC--EEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC
T ss_pred             CCCCCc--ceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccc
Confidence            988321  112778889999999999965  577777655555 77765321110 0 000000                


Q ss_pred             eee---------eee------cCCCcccccCcceeeEEEEecC---C---EEEEecCCCeEEEEeC
Q 009993          406 VSR---------VIE------VEPPQRMLHGFECNLLSVDIGA---D---RIVCGGEEGIVRIWNF  450 (520)
Q Consensus       406 ~~~---------~~~------~~~~~~~~~~~~~~v~~~~~~~---~---~l~sg~~Dg~v~iwd~  450 (520)
                      ...         +..      ..........|...|.++.+.+   .   .|+|||.||.|++||+
T Consensus       312 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          312 EGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             -------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             ccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence            000         000      0011122334888888887532   2   6999999999999985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-36  Score=298.44  Aligned_cols=318  Identities=15%  Similarity=0.141  Sum_probs=242.5

Q ss_pred             CCCcccHHHh------hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCC----CcEEEEeCCCCceEEEEe--c
Q 009993          125 FSDDKSWKEL------IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED----GFSIASSKPLGCTIRAVA--A  192 (520)
Q Consensus       125 ~~~~~~W~~~------~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~----~~~~~~~~~~~~~v~~~~--~  192 (520)
                      +...++|+..      ......|...|++++|+|++++|++|+.||.|++||+.+    ...+..+.+|...|.++.  +
T Consensus        44 d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  123 (416)
T 2pm9_A           44 DSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNA  123 (416)
T ss_dssp             CCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECS
T ss_pred             CCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcC
Confidence            4456889721      122246899999999999999999999999999999987    457888889988887765  7


Q ss_pred             C-CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--c-CCEEEEEecCCeEEEEECCCCc
Q 009993          193 D-KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D-LTRIYSGSWDMTVRVWDRALLK  268 (520)
Q Consensus       193 ~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~-~~~l~s~s~dg~v~iwd~~~~~  268 (520)
                      + +.+|++|+.||.|++||+.++......    ..........+|...|.+++|  + +.++++++.||.|++||+++++
T Consensus       124 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~  199 (416)
T 2pm9_A          124 KQDNVLASGGNNGEIFIWDMNKCTESPSN----YTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK  199 (416)
T ss_dssp             SSTTBEEEECSSSCEEBCBTTTTSSCTTT----CCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCcccccc----ccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC
Confidence            6 889999999999999999876310000    001112234579999999999  3 5789999999999999999999


Q ss_pred             EEEEee-e------ccCEEEEe--eCC-CEEEEEc-CC---eEEEEECCCC-eeeEEeecccccceEEEEecC-CCCEEE
Q 009993          269 CLKVLR-H------SDWVYGLA--PHD-TTVASTS-GS---DVYIWDTNSG-CLLTVVNGAHVGNTKSLARSH-TGDFLF  332 (520)
Q Consensus       269 ~~~~~~-~------~~~v~~~~--~~~-~~l~~~~-d~---~i~iwd~~~~-~~~~~~~~~~~~~i~~l~~s~-~~~~l~  332 (520)
                      .+..+. +      ...|.++.  +++ .++++++ |+   .|++||++++ ..+..+..+|...|.+++|+| ++.+|+
T Consensus       200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~  279 (416)
T 2pm9_A          200 EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLL  279 (416)
T ss_dssp             EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEE
T ss_pred             cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEE
Confidence            988887 3      67899888  665 5888888 77   9999999987 455555426999999999999 999999


Q ss_pred             EEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccccCCCCC---CCce
Q 009993          333 TGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTS---GKRV  406 (520)
Q Consensus       333 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~~~~  406 (520)
                      +++.||.|++||++++      ..+..+.+|...|++++|+|   .+|++++.||.|++||+.+.........   ....
T Consensus       280 s~~~dg~v~~wd~~~~------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~  353 (416)
T 2pm9_A          280 SSGRDNTVLLWNPESA------EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQE  353 (416)
T ss_dssp             EEESSSEEEEECSSSC------CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC---------
T ss_pred             EEeCCCCEEEeeCCCC------ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccC
Confidence            9999999999999988      67888899999999999976   6899999999999999987644322111   0000


Q ss_pred             e--eeeec------------CCCcccccCccee--eEEEEecCCEEEEecCCCeEEEEeCCch
Q 009993          407 S--RVIEV------------EPPQRMLHGFECN--LLSVDIGADRIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       407 ~--~~~~~------------~~~~~~~~~~~~~--v~~~~~~~~~l~sg~~Dg~v~iwd~~~~  453 (520)
                      .  .+...            ... .....|...  ..++++++++|++|+.||.|+||++.++
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          354 SETDFWNNVSREESKEKPSVFHL-QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             -------------CCSCCCSSCC-CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             Ccccccccccccccccccccccc-cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence            0  00000            000 111113333  4677788889999999999999999864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-35  Score=291.78  Aligned_cols=289  Identities=14%  Similarity=0.121  Sum_probs=234.4

Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccee
Q 009993          141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHL  218 (520)
Q Consensus       141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~  218 (520)
                      |.+.|++++|+|++++|++|+.||.|++|| .++..+..+..|...|.++.  +++++|++++.||.|++||+.++.   
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---  182 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT---  182 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE---
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc---
Confidence            788999999999999999999999999999 67888899999998888776  899999999999999999997763   


Q ss_pred             eeccCCccccceEEeccCCCC---------------eEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEE
Q 009993          219 FDISGSEKQNTQFRLWEHEGP---------------ITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYG  281 (520)
Q Consensus       219 ~~~~~~~~~~~~~~~~~h~~~---------------v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~  281 (520)
                                ....+..+...               +.+++| .++.+++++.||.|++||+.+++.+..+. |...|.+
T Consensus       183 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~  252 (425)
T 1r5m_A          183 ----------VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISV  252 (425)
T ss_dssp             ----------EEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEE
T ss_pred             ----------EEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEE
Confidence                      23334444444               888888 66889999999999999999998888776 8888988


Q ss_pred             Ee--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeee
Q 009993          282 LA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA  358 (520)
Q Consensus       282 ~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~  358 (520)
                      +.  ++++++++++ |+.|++||+++++.+..+. +|...|.+++|+|++ ++++++.||.|++||++++      ..+.
T Consensus       253 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~------~~~~  324 (425)
T 1r5m_A          253 LEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY-GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN------TLLA  324 (425)
T ss_dssp             EEEETTTTEEEEEETTSCEEEECSSSBSCSEEEC-CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT------EEEE
T ss_pred             EEECCCCCEEEEEcCCCEEEEEECCCCccceEec-CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC------cEeE
Confidence            87  7889999999 9999999999999888886 599999999999999 9999999999999999988      6788


Q ss_pred             eecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeee-eecCCCcccccCcce--eeEEEEecC
Q 009993          359 TWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRV-IEVEPPQRMLHGFEC--NLLSVDIGA  433 (520)
Q Consensus       359 ~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~v~~~~~~~  433 (520)
                      .+..|...|.+++|+|  ++|++++.||.|++||+.+................ .........+.+|..  .|.++.+++
T Consensus       325 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  404 (425)
T 1r5m_A          325 LSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC  404 (425)
T ss_dssp             EEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT
T ss_pred             ecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC
Confidence            8889999999999976  69999999999999999876422111110000000 000123455666744  677777654


Q ss_pred             --CEEEEecCCCeEEEEeCC
Q 009993          434 --DRIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       434 --~~l~sg~~Dg~v~iwd~~  451 (520)
                        .+|++++.||.|++|+++
T Consensus       405 ~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          405 AGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             TSSEEEEEESSSCCEEEECC
T ss_pred             CCceEEEEecCceEEEEeec
Confidence              599999999999999986

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.7e-35  Score=283.24  Aligned_cols=270  Identities=17%  Similarity=0.216  Sum_probs=227.3

Q ss_pred             cCcchhhhhhhhhcCCCCCCC-CCCCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 009993           99 SDHHAWKEFYCERWGLPIASA-PLGAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED  173 (520)
Q Consensus        99 ~~~~lW~~~~~~~~~~~~~~~-~~~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~  173 (520)
                      ..|.  ..++|..|. |+... ...+.+...++|+    ...+.+..|...|.+++|+|+|.+|++|+.|+.+++|++..
T Consensus        61 ~gH~--~~V~~~~~s-~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~  137 (354)
T 2pbi_B           61 KGHG--NKVLCMDWC-KDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTF  137 (354)
T ss_dssp             ECCS--SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCC
T ss_pred             cCCC--CeEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEec
Confidence            3444  446788887 44433 3334455568998    34566788999999999999999999999999999999865


Q ss_pred             C------cEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE
Q 009993          174 G------FSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL  245 (520)
Q Consensus       174 ~------~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  245 (520)
                      .      .....+.+|...|.++.  +++..|++|+.||+|++||+.++.             ....+.+|...|.++++
T Consensus       138 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~-------------~~~~~~~h~~~v~~~~~  204 (354)
T 2pbi_B          138 DKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ-------------LLQSFHGHGADVLCLDL  204 (354)
T ss_dssp             CTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-------------EEEEEECCSSCEEEEEE
T ss_pred             cccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe-------------EEEEEcCCCCCeEEEEE
Confidence            4      23455667888777665  889999999999999999997763             45677899999999998


Q ss_pred             ----cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeec-ccc
Q 009993          246 ----DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG-AHV  316 (520)
Q Consensus       246 ----~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~-~~~  316 (520)
                          ++++|++|+.||+|++||+++++++..+. |...|.++.  |++.++++++ |++|++||+++++.+..+.. .+.
T Consensus       205 ~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~  284 (354)
T 2pbi_B          205 APSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESII  284 (354)
T ss_dssp             CCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC
T ss_pred             EeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcc
Confidence                35799999999999999999999998887 899999988  7899999999 99999999999887776642 234


Q ss_pred             cceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEe
Q 009993          317 GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLID  390 (520)
Q Consensus       317 ~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd  390 (520)
                      ..+.+++|+|++.+|++|+.|+.|++||+.++      ..+..+.+|.+.|++++|+|  .+|++|+.||+|++|+
T Consensus       285 ~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~------~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          285 FGASSVDFSLSGRLLFAGYNDYTINVWDVLKG------SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTC------SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             cceeEEEEeCCCCEEEEEECCCcEEEEECCCC------ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            57899999999999999999999999999888      66788899999999999976  6999999999999996

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.9e-35  Score=314.45  Aligned_cols=281  Identities=18%  Similarity=0.243  Sum_probs=240.5

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV  212 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~  212 (520)
                      .+.+.+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|.++.  |++++|++|+.||.|++||+.
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~   85 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN   85 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            567899999999999999999999999999999999999999999999998887765  999999999999999999997


Q ss_pred             cCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCC-cEEEEee-eccCEEEEe--e-C
Q 009993          213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL-KCLKVLR-HSDWVYGLA--P-H  285 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~-~~~~v~~~~--~-~  285 (520)
                      ++.             ....+.+|.+.|++++|  ++.+|++++.||+|++||+.++ .....+. |...|.++.  | +
T Consensus        86 ~~~-------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~  152 (814)
T 3mkq_A           86 TGE-------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD  152 (814)
T ss_dssp             TCC-------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTE
T ss_pred             CCc-------------EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCC
Confidence            763             55667789999999999  6789999999999999999987 5556665 888999888  5 6


Q ss_pred             CCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecC--CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecC
Q 009993          286 DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH--TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP  362 (520)
Q Consensus       286 ~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  362 (520)
                      +..+++++ |+.|++||+.++.....+...+...+.+++|+|  ++.++++|+.||.|++||+.++      ..+..+.+
T Consensus       153 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~------~~~~~~~~  226 (814)
T 3mkq_A          153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK------SCVATLEG  226 (814)
T ss_dssp             EEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT------EEEEEEEC
T ss_pred             CCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC------cEEEEEcC
Confidence            77888888 999999999999888888766668999999999  9999999999999999999988      67888889


Q ss_pred             CcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC---EEE
Q 009993          363 HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD---RIV  437 (520)
Q Consensus       363 h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~  437 (520)
                      |...|++++|+|  ++|++++.||.|++||+.++                   .....+..+...+.++.++++   .++
T Consensus       227 ~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~  287 (814)
T 3mkq_A          227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-------------------KVEKTLNVGLERSWCIATHPTGRKNYI  287 (814)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-------------------SEEEEECCSSSSEEEEEECTTCGGGEE
T ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------cEEEEeecCCCcEEEEEEccCCCceEE
Confidence            999999999977  68999999999999999873                   223334455566777766554   234


Q ss_pred             EecCCCeEEEEeCCch
Q 009993          438 CGGEEGIVRIWNFSQA  453 (520)
Q Consensus       438 sg~~Dg~v~iwd~~~~  453 (520)
                      +++.|+.+.+|++..+
T Consensus       288 ~~~~~~~~~~~~~~~~  303 (814)
T 3mkq_A          288 ASGFDNGFTVLSLGND  303 (814)
T ss_dssp             EEEETTEEEEEECSCC
T ss_pred             EEEeCCCEEEEEcCCC
Confidence            4455677899987654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.6e-34  Score=270.47  Aligned_cols=246  Identities=15%  Similarity=0.132  Sum_probs=201.2

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCC--CcEEEEeCCCCceEEEEe--c--CCCEEEEEeCCCcEEE
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED--GFSIASSKPLGCTIRAVA--A--DKKLLVAGGTDGFIHC  208 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~--~~~~~~~~~~~~~v~~~~--~--~~~~l~sg~~dg~i~v  208 (520)
                      +..+.+|.+.|++++|+|+|++|++|+.|++|+|||+.+  ++.+.++.+|...|.++.  +  ++++|++|+.||+|++
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            346789999999999999999999999999999999974  367788999999998886  3  3789999999999999


Q ss_pred             EEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc----CCEEEEEecCCeEEEEECCCCcE--EEEee-eccCEEE
Q 009993          209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD----LTRIYSGSWDMTVRVWDRALLKC--LKVLR-HSDWVYG  281 (520)
Q Consensus       209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~v~iwd~~~~~~--~~~~~-~~~~v~~  281 (520)
                      ||+.++.           ......+.+|...|.+++|.    +.+|++|+.|++|++||++++..  ...+. |...|.+
T Consensus        82 Wd~~~~~-----------~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~  150 (297)
T 2pm7_B           82 WKEENGR-----------WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS  150 (297)
T ss_dssp             EEBSSSC-----------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEE
T ss_pred             EEcCCCc-----------eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccce
Confidence            9997652           12445677899999999993    67999999999999999987632  23333 8888988


Q ss_pred             Ee--eC-------------CCEEEEEc-CCeEEEEECCCCe----eeEEeecccccceEEEEecCCC---CEEEEEeCCC
Q 009993          282 LA--PH-------------DTTVASTS-GSDVYIWDTNSGC----LLTVVNGAHVGNTKSLARSHTG---DFLFTGGEDG  338 (520)
Q Consensus       282 ~~--~~-------------~~~l~~~~-d~~i~iwd~~~~~----~~~~~~~~~~~~i~~l~~s~~~---~~l~tg~~dg  338 (520)
                      +.  |+             +++|++++ |+.|++||++++.    ....+. +|...|.+++|+|++   .+|++|+.|+
T Consensus       151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-~H~~~V~~v~~sp~~~~~~~las~s~D~  229 (297)
T 2pm7_B          151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYMASVSQDR  229 (297)
T ss_dssp             EEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred             EeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec-CCCCceEEEEECCCCCCceEEEEEECCC
Confidence            87  43             46899988 9999999998765    445555 799999999999985   8999999999


Q ss_pred             eEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993          339 AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       339 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  393 (520)
                      +|++||++....... ........|...|.+++|+|  ++|++++.||.|++|+...
T Consensus       230 ~v~iWd~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          230 TCIIWTQDNEQGPWK-KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             CEEEEEESSTTSCCE-EEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             cEEEEEeCCCCCccc-eeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            999999987521110 11111256888999999976  6999999999999999763

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=9.4e-35  Score=279.56  Aligned_cols=278  Identities=19%  Similarity=0.250  Sum_probs=221.7

Q ss_pred             hhhhhcCCCCCCCCC-CCCCCCcccHHHh-------hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC--cE
Q 009993          107 FYCERWGLPIASAPL-GAGFSDDKSWKEL-------IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG--FS  176 (520)
Q Consensus       107 ~~~~~~~~~~~~~~~-~~~~~~~~~W~~~-------~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~--~~  176 (520)
                      +++..|+ |+...+. .+.+...++|+..       .....+|.+.|.+++|+|++++|++|+.|++|++|++.++  +.
T Consensus        19 v~~l~~s-p~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~   97 (345)
T 3fm0_A           19 CWFLAWN-PAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFEC   97 (345)
T ss_dssp             EEEEEEC-TTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEE
T ss_pred             EEEEEEC-CCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEE
Confidence            3456676 5554443 3446667999721       1224799999999999999999999999999999999876  45


Q ss_pred             EEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEE
Q 009993          177 IASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYS  252 (520)
Q Consensus       177 ~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s  252 (520)
                      +..+.+|...|.++.  |++++|++|+.|++|++||+.++..          ......+.+|...|.+++|  ++.+|++
T Consensus        98 ~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~----------~~~~~~~~~h~~~v~~~~~~p~~~~l~s  167 (345)
T 3fm0_A           98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE----------YECVSVLNSHTQDVKHVVWHPSQELLAS  167 (345)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC----------EEEEEEECCCCSCEEEEEECSSSSCEEE
T ss_pred             EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC----------eEEEEEecCcCCCeEEEEECCCCCEEEE
Confidence            778899999888766  8999999999999999999876521          2345567889999999999  6789999


Q ss_pred             EecCCeEEEEECCCCcE--EEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCC---------------eeeEEe
Q 009993          253 GSWDMTVRVWDRALLKC--LKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSG---------------CLLTVV  311 (520)
Q Consensus       253 ~s~dg~v~iwd~~~~~~--~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~---------------~~~~~~  311 (520)
                      |+.|++|++||.++++.  ...+. |...|.+++  |++++|++++ |++|++||....               .++..+
T Consensus       168 ~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (345)
T 3fm0_A          168 ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL  247 (345)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEE
T ss_pred             EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEe
Confidence            99999999999988754  34454 889999987  8899999999 999999996321               234445


Q ss_pred             ecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccccee---eeeeecCCcCCEEEEEecC---CEEEEEeCCCc
Q 009993          312 NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL---LVATWIPHTGPVNSLAFEF---PWLVSAAGDGK  385 (520)
Q Consensus       312 ~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~---~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~  385 (520)
                      ...|...|++++|+|++..|++++.|+.|++|+...........   ......+|...|++++|+|   .+|++|+.||+
T Consensus       248 ~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~  327 (345)
T 3fm0_A          248 SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGE  327 (345)
T ss_dssp             CSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred             cCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCc
Confidence            44588899999999999999999999999999987653222111   1233468999999999987   48999999999


Q ss_pred             EEEEeCCccc
Q 009993          386 LSLIDVRKLL  395 (520)
Q Consensus       386 i~vwd~~~~~  395 (520)
                      |++|++.+..
T Consensus       328 v~~W~~~~~~  337 (345)
T 3fm0_A          328 VAFWKYQRPE  337 (345)
T ss_dssp             EEEEEECC--
T ss_pred             EEEEEecCCC
Confidence            9999998754

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.5e-34  Score=278.51  Aligned_cols=287  Identities=13%  Similarity=0.090  Sum_probs=223.2

Q ss_pred             ccEEEEEEccCCCEEEEEeCCC-------eEEEEECCCCcE----------EEEeCCCCceEEEEecCCCEEEEEe----
Q 009993          143 EAVLTVFVLASAKLLFTSGYDS-------IVRMWHLEDGFS----------IASSKPLGCTIRAVAADKKLLVAGG----  201 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~sgs~dg-------~v~vwd~~~~~~----------~~~~~~~~~~v~~~~~~~~~l~sg~----  201 (520)
                      -+|++++|+||+++|++|+.|.       .|++|++..+..          ...+.+|...+.+++++++.+++|.    
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~   94 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENS   94 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCH
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCc
Confidence            4799999999999999998644       599999876532          1245678888999999999888874    


Q ss_pred             -------CCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEE--EecCCeEEEEECCCCcEE
Q 009993          202 -------TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYS--GSWDMTVRVWDRALLKCL  270 (520)
Q Consensus       202 -------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s--~s~dg~v~iwd~~~~~~~  270 (520)
                             .|+.+++|++.+..........    ........+...+.+++|  ||+++++  ++.|++|++||+++++++
T Consensus        95 ~~l~s~~~d~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~  170 (365)
T 4h5i_A           95 TKITQGKGNKHLRKFKYDKVNDQLEFLTS----VDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK  170 (365)
T ss_dssp             HHHHHTSCCCCEEEEEEETTTTEEEEEEE----ECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE
T ss_pred             cEEEEecCCCcEEEEEecCCCceEEEeee----eceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE
Confidence                   4678999998765432211100    001112245567889999  7787664  457899999999999999


Q ss_pred             EEeeeccCEEEEe--eCCCEEEEEcCCeEEEEECCCCeeeEE-eecccccceEEEEecCCCCEEEEEeCCC----eEEEE
Q 009993          271 KVLRHSDWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTV-VNGAHVGNTKSLARSHTGDFLFTGGEDG----AIHMY  343 (520)
Q Consensus       271 ~~~~~~~~v~~~~--~~~~~l~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~tg~~dg----~i~iw  343 (520)
                      ..+.|...|.+++  |+++++++++++.+.+|+..++..+.. ...+|...|.+++|+|++.++++++.|+    .+++|
T Consensus       171 ~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~  250 (365)
T 4h5i_A          171 FEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI  250 (365)
T ss_dssp             EEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred             EEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence            9999888999887  899999999988888888888776543 3346888999999999999999999887    68888


Q ss_pred             EcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccC
Q 009993          344 EIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG  421 (520)
Q Consensus       344 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (520)
                      ++.....  .......+.+|..+|++++|+|  ++|++|+.|++|+|||++++.                  .....+.+
T Consensus       251 ~~~~~~~--~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~------------------~~~~~~~g  310 (365)
T 4h5i_A          251 SIKSGNT--SVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS------------------MSKIFKQA  310 (365)
T ss_dssp             EEETTEE--EEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE------------------EEEEETTS
T ss_pred             cccccee--cceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc------------------EEEEecCc
Confidence            8876631  1133556788999999999977  699999999999999998742                  12223578


Q ss_pred             cceeeEEEEecCC--EEEEecCCCeEEEEeCCch
Q 009993          422 FECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       422 ~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~  453 (520)
                      |...|.+++|+++  +|||||.|++|||||+...
T Consensus       311 H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          311 HSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             SSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            8888888877654  9999999999999999754

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=7.3e-35  Score=327.12  Aligned_cols=327  Identities=18%  Similarity=0.238  Sum_probs=266.9

Q ss_pred             CCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--c--CCC
Q 009993          124 GFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--A--DKK  195 (520)
Q Consensus       124 ~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~--~~~  195 (520)
                      .+...++|+    +.+.++.+|.+.|++++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.++.  +  ++.
T Consensus       635 ~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  714 (1249)
T 3sfz_A          635 ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHL  714 (1249)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCC
T ss_pred             CCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCce
Confidence            345568898    45778899999999999999999999999999999999999999999999999888876  5  566


Q ss_pred             EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEe
Q 009993          196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL  273 (520)
Q Consensus       196 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~  273 (520)
                      .+++|+.||.|++||+.++.             ....+.+|.+.|.+++|  +++++++++.||+|++||+.+++....+
T Consensus       715 ~l~sg~~d~~v~vwd~~~~~-------------~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~  781 (1249)
T 3sfz_A          715 LLATGSNDFFLKLWDLNQKE-------------CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSI  781 (1249)
T ss_dssp             EEEEEETTSCEEEEETTSSS-------------EEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCcc-------------hhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCccccee
Confidence            89999999999999997763             55677899999999999  7789999999999999999877654443


Q ss_pred             e--------------------------------------------------------eccCEEEEe--eCCCEEEEEc-C
Q 009993          274 R--------------------------------------------------------HSDWVYGLA--PHDTTVASTS-G  294 (520)
Q Consensus       274 ~--------------------------------------------------------~~~~v~~~~--~~~~~l~~~~-d  294 (520)
                      .                                                        |...|.++.  +++.++++++ +
T Consensus       782 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d  861 (1249)
T 3sfz_A          782 NVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ  861 (1249)
T ss_dssp             ECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSS
T ss_pred             cccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCC
Confidence            2                                                        334455544  7889999998 8


Q ss_pred             CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccc-----------------------
Q 009993          295 SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE-----------------------  351 (520)
Q Consensus       295 ~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~-----------------------  351 (520)
                      +.|++||+.++..+..+. +|...|.+++|+|++.++++++.||.|++||+......                       
T Consensus       862 g~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  940 (1249)
T 3sfz_A          862 YCVELWNIDSRLKVADCR-GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAV  940 (1249)
T ss_dssp             SCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEE
T ss_pred             CeEEEEEcCCCceeeecC-CCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEe
Confidence            999999999999988887 69999999999999999999999999999997531000                       


Q ss_pred             --------------------------------------------------cceeeeeeecCCcCCEEEEEecC--CEEEE
Q 009993          352 --------------------------------------------------ANVLLVATWIPHTGPVNSLAFEF--PWLVS  379 (520)
Q Consensus       352 --------------------------------------------------~~~~~~~~~~~h~~~v~~l~~~~--~~l~s  379 (520)
                                                                        ........+.+|...|++++|+|  ++|++
T Consensus       941 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1020 (1249)
T 3sfz_A          941 DNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1020 (1249)
T ss_dssp             ESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEE
T ss_pred             cCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEE
Confidence                                                              00123345567999999999976  69999


Q ss_pred             EeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEeCCchHhHHH
Q 009993          380 AAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEIER  458 (520)
Q Consensus       380 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~~~~  458 (520)
                      ++.||.|++||+.++...                    ...+|...+.++.+.++ .+++++.||.|++||+.++..+..
T Consensus      1021 ~~~dg~i~vwd~~~~~~~--------------------~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~ 1080 (1249)
T 3sfz_A         1021 SSEDSVIQVWNWQTGDYV--------------------FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERD 1080 (1249)
T ss_dssp             ECSSSBEEEEETTTTEEE--------------------CCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEE
T ss_pred             EcCCCEEEEEECCCCceE--------------------EEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEE
Confidence            999999999999874221                    13466777888887766 899999999999999988754322


Q ss_pred             HhhhhcccccchhhhhccceeeeccCCCcccccccc
Q 009993          459 RARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA  494 (520)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~  494 (520)
                                .......+..++|+|||+.+++++.+
T Consensus      1081 ----------~~~~~~~v~~~~~s~d~~~l~s~s~d 1106 (1249)
T 3sfz_A         1081 ----------FTCHQGTVLSCAISSDATKFSSTSAD 1106 (1249)
T ss_dssp             ----------EECCSSCCCCEEECSSSSSCEEECCS
T ss_pred             ----------EcccCCcEEEEEECCCCCEEEEEcCC
Confidence                      12234457899999999999988753

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.6e-34  Score=274.28  Aligned_cols=305  Identities=18%  Similarity=0.256  Sum_probs=243.7

Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccee
Q 009993          141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHL  218 (520)
Q Consensus       141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~  218 (520)
                      |.++|.+++|+|+|++++++..++.+.+|............+|...|.++.  ++++++++++ ||.|++||+.++... 
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~-   85 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK-   85 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC-
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce-
Confidence            567899999999999999998888777776665555555557887776665  8999999999 999999999775310 


Q ss_pred             eeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCc--EEEEee-eccCEEEEe--eCCCEEEE
Q 009993          219 FDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK--CLKVLR-HSDWVYGLA--PHDTTVAS  291 (520)
Q Consensus       219 ~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~-~~~~v~~~~--~~~~~l~~  291 (520)
                             .........+|...|.+++|  +++++++++.||.|++||+.+++  ....+. |...|.++.  ++++++++
T Consensus        86 -------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  158 (337)
T 1gxr_A           86 -------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS  158 (337)
T ss_dssp             -------SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred             -------eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEE
Confidence                   11122223379999999999  67899999999999999999887  444444 778888877  78899999


Q ss_pred             Ec-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEE
Q 009993          292 TS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL  370 (520)
Q Consensus       292 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l  370 (520)
                      ++ |+.|++||+++++.+..+. +|...+.+++|+|++++|++++.||.|++||++++      ..+..+ .|...+.++
T Consensus       159 ~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~------~~~~~~-~~~~~v~~~  230 (337)
T 1gxr_A          159 CCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG------RQLQQH-DFTSQIFSL  230 (337)
T ss_dssp             EETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------EEEEEE-ECSSCEEEE
T ss_pred             EeCCCcEEEEeCCCCceeeeee-cccCceEEEEECCCCCEEEEEecCCcEEEEECCCC------ceEeee-cCCCceEEE
Confidence            88 8999999999999988887 59999999999999999999999999999999988      444444 477899999


Q ss_pred             EecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEec--CCEEEEecCCCeEE
Q 009993          371 AFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVR  446 (520)
Q Consensus       371 ~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~v~  446 (520)
                      +|+|  ++|++++.||.|++||+++..                    ...+..|...+.++.++  +++|++++.||.|+
T Consensus       231 ~~s~~~~~l~~~~~~~~i~~~~~~~~~--------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  290 (337)
T 1gxr_A          231 GYCPTGEWLAVGMESSNVEVLHVNKPD--------------------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLN  290 (337)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTSSC--------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCC--------------------eEEEcCCccceeEEEECCCCCEEEEecCCCcEE
Confidence            9976  699999999999999998742                    11234566667666665  55999999999999


Q ss_pred             EEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccccccc
Q 009993          447 IWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSV  493 (520)
Q Consensus       447 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~  493 (520)
                      +||+.++..+..           ......+..++|+|+|+.+++++.
T Consensus       291 ~~~~~~~~~~~~-----------~~~~~~v~~~~~s~~~~~l~~~~~  326 (337)
T 1gxr_A          291 AWRTPYGASIFQ-----------SKESSSVLSCDISVDDKYIVTGSG  326 (337)
T ss_dssp             EEETTTCCEEEE-----------EECSSCEEEEEECTTSCEEEEEET
T ss_pred             EEECCCCeEEEE-----------ecCCCcEEEEEECCCCCEEEEecC
Confidence            999988754411           112345788999999999988774

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-34  Score=272.91  Aligned_cols=298  Identities=18%  Similarity=0.179  Sum_probs=218.2

Q ss_pred             CCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEe-cc-CCCCeEEEEE--cCC
Q 009993          173 DGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL-WE-HEGPITSLAL--DLT  248 (520)
Q Consensus       173 ~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~l~~--~~~  248 (520)
                      +.+.+..+.+|...|.++..++.+|++|+.|++|++||+.++..           .....+ .+ |...|.+++|  +++
T Consensus         3 ~~~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~-----------~~~~~~~~~~h~~~v~~v~~sp~~~   71 (330)
T 2hes_X            3 SINLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDF-----------TLIDVLDETAHKKAIRSVAWRPHTS   71 (330)
T ss_dssp             CCEEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCC-----------EEEEEECTTCCCSCEEEEEECTTSS
T ss_pred             ccccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCe-----------EEEEEEecCCccCCEEEEEECCCCC
Confidence            45677888999999999986666999999999999999876421           122233 34 9999999999  678


Q ss_pred             EEEEEecCCeEEEEECCC-------CcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCC----eeeEEeec
Q 009993          249 RIYSGSWDMTVRVWDRAL-------LKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSG----CLLTVVNG  313 (520)
Q Consensus       249 ~l~s~s~dg~v~iwd~~~-------~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~----~~~~~~~~  313 (520)
                      +|++|+.|++|++||+..       .+.+..+. |...|.++.  |++++|++++ |++|++||++..    +.+..+. 
T Consensus        72 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~-  150 (330)
T 2hes_X           72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ-  150 (330)
T ss_dssp             EEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC-
T ss_pred             EEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec-
Confidence            999999999999999853       34555555 899999987  8899999999 999999999532    4555565 


Q ss_pred             ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCC----EEEEEeCCCcEEEE
Q 009993          314 AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP----WLVSAAGDGKLSLI  389 (520)
Q Consensus       314 ~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~l~s~s~dg~i~vw  389 (520)
                      +|...|.+++|+|++.+|++|+.|++|++||...+..    .++..+.+|.+.|.+++|+|.    +|++|+.|++|++|
T Consensus       151 ~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw  226 (330)
T 2hes_X          151 EHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW----ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW  226 (330)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE----EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEE
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe----eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEE
Confidence            6999999999999999999999999999999876521    467788999999999999763    79999999999999


Q ss_pred             eCCcccccCCCCCCCceeeeeecCCCccccc-CcceeeEEEEecCC-EEEEecCCCeEEEEeCCchHhHHHHhhhhcccc
Q 009993          390 DVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH-GFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEIERRARALRGIR  467 (520)
Q Consensus       390 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~  467 (520)
                      |+.......     ..  .    ......+. .|...|.++.+++. +|++++.||.|++|+..++...     ..  ..
T Consensus       227 ~~~~~~~~~-----~~--~----~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~-----~~--~~  288 (330)
T 2hes_X          227 KYMGDDEDD-----QQ--E----WVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWK-----VF--AK  288 (330)
T ss_dssp             EEEEECTTS-----CE--E----EEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEE-----EE--EE
T ss_pred             EecCCCccc-----cc--e----eEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceE-----EE--ec
Confidence            997642110     00  0    01111223 37788888888755 8999999999999998654210     00  00


Q ss_pred             cchhhhh-ccceeeecc--CCCcccccccccccCCCCCCcceeeeccc
Q 009993          468 LENRMRR-RKLQTEMSS--KGGRTDQCSVAAKKNPMNGNRRSVWHNKR  512 (520)
Q Consensus       468 ~~~~~~~-~~~~~~~s~--~g~~~~~~s~~~~~~~~~~~~~~~~~~~~  512 (520)
                      ....+.. .+..++|+|  +|..+++++.+.        +..+|....
T Consensus       289 ~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg--------~v~~W~~~~  328 (330)
T 2hes_X          289 RALCHGVYEINVVKWLELNGKTILATGGDDG--------IVNFWSLEK  328 (330)
T ss_dssp             ESCTTTTSCEEEEEEC-----CCEEEEETTS--------EEEEEEC--
T ss_pred             cccccccceEEEEEEecCCCceEEEEecCCC--------cEEEEEecc
Confidence            0111222 467889999  688888887532        247887643

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-35  Score=296.25  Aligned_cols=304  Identities=11%  Similarity=0.104  Sum_probs=217.6

Q ss_pred             ccccEEEEEEccCC---------CEEEE-------------------EeCCCeEEEEECCCCcEE----EEeCCCCceEE
Q 009993          141 HTEAVLTVFVLASA---------KLLFT-------------------SGYDSIVRMWHLEDGFSI----ASSKPLGCTIR  188 (520)
Q Consensus       141 h~~~V~~l~~~~~~---------~~l~s-------------------gs~dg~v~vwd~~~~~~~----~~~~~~~~~v~  188 (520)
                      +.+.|.+|+|+|++         ++||+                   ++.|++|+|||+.+++..    ..+..|...|.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            46677777777765         45554                   668899999999877642    33555666676


Q ss_pred             EEe--cC------CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeE
Q 009993          189 AVA--AD------KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTV  259 (520)
Q Consensus       189 ~~~--~~------~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v  259 (520)
                      ++.  |+      +.+|++|+.||+|++||+.++.......  .........+.+|...|++++| .++.|++|+.||+|
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~--~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV  289 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF--KMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFV  289 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE--ECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEE
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc--eeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEE
Confidence            654  64      5799999999999999997653210000  0011234567889999999999 55799999999999


Q ss_pred             EEEECCCCc-EEEEee-eccCEEEE--e--eCC-CEEEEEc-CCeEEEEECCCCeeeEEeeccccc--ceEEEEecCCCC
Q 009993          260 RVWDRALLK-CLKVLR-HSDWVYGL--A--PHD-TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVG--NTKSLARSHTGD  329 (520)
Q Consensus       260 ~iwd~~~~~-~~~~~~-~~~~v~~~--~--~~~-~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~--~i~~l~~s~~~~  329 (520)
                      ++||++++. ....+. |...|.++  .  +++ .+|++++ |++|++||+++++.+..+. +|..  .|.+++|+|++.
T Consensus       290 ~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~-~~~~~~~v~~v~fsp~~~  368 (524)
T 2j04_B          290 AEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV-SRFRGSNLVPVVYCPQIY  368 (524)
T ss_dssp             EEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE-EECSCCSCCCEEEETTTT
T ss_pred             EEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc-cccccCcccceEeCCCcC
Confidence            999999764 344454 89999998  3  456 7899999 9999999999988776665 3543  588999999999


Q ss_pred             EEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccC-C-------
Q 009993          330 FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSG-R-------  399 (520)
Q Consensus       330 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~-~-------  399 (520)
                      .+++++.|++|++||++++      .++.++.+|.+.|++|+|+|  ++|++|+.||+|++||+....... .       
T Consensus       369 ~l~s~~~d~tv~lwd~~~~------~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~  442 (524)
T 2j04_B          369 SYIYSDGASSLRAVPSRAA------FAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQK  442 (524)
T ss_dssp             EEEEECSSSEEEEEETTCT------TCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CC
T ss_pred             eEEEeCCCCcEEEEECccc------ccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCcccee
Confidence            9999999999999999988      56677889999999999987  689999999999999986532111 0       


Q ss_pred             ------CCCCC--ceeeeee---c------CCCcccccCcceeeEEEEecCC-----EEEEecCCCeEEEEeCCch
Q 009993          400 ------PTSGK--RVSRVIE---V------EPPQRMLHGFECNLLSVDIGAD-----RIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       400 ------~~~~~--~~~~~~~---~------~~~~~~~~~~~~~v~~~~~~~~-----~l~sg~~Dg~v~iwd~~~~  453 (520)
                            .....  ....+..   +      ......+.+|...|.+++|+++     .+++|+.||.|+||++.-+
T Consensus       443 ~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          443 SLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             CCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred             eeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence                  00000  0000000   0      2234456788888888888776     8999999999999998743

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.6e-33  Score=282.72  Aligned_cols=295  Identities=21%  Similarity=0.307  Sum_probs=237.8

Q ss_pred             CCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe----cCCC
Q 009993          124 GFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA----ADKK  195 (520)
Q Consensus       124 ~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~----~~~~  195 (520)
                      .+...++|+    +.+..+.+|.+.|++++|+|++ +|++|+.||+|++||+.+++.+..+.+|...|.++.    +++.
T Consensus       140 ~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  218 (464)
T 3v7d_B          140 DDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK  218 (464)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCE
T ss_pred             CCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCC
Confidence            345568898    5577889999999999999988 999999999999999999999999999999988775    4678


Q ss_pred             EEEEEeCCCcEEEEEcccCcceeeec----------cCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECC
Q 009993          196 LLVAGGTDGFIHCWRAVEVLPHLFDI----------SGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRA  265 (520)
Q Consensus       196 ~l~sg~~dg~i~vwd~~~~~~~~~~~----------~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~  265 (520)
                      ++++|+.||.|++||+.++.......          ...........+.+|...|.++..+++++++|+.||+|++||++
T Consensus       219 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~  298 (464)
T 3v7d_B          219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVA  298 (464)
T ss_dssp             EEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred             EEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            99999999999999998764221100          00011123557789999999999999999999999999999999


Q ss_pred             CCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEE
Q 009993          266 LLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIH  341 (520)
Q Consensus       266 ~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~  341 (520)
                      +++++..+. |...|.++.  ++++.+++++ |+.|++||+++++.+..+. +|...|.+++|+  +.+|++|+.||.|+
T Consensus       299 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~s~dg~v~  375 (464)
T 3v7d_B          299 QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-GHTALVGLLRLS--DKFLVSAAADGSIR  375 (464)
T ss_dssp             TTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEC--SSEEEEEETTSEEE
T ss_pred             CCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCcEEEEEEc--CCEEEEEeCCCcEE
Confidence            999998887 889998887  7889999999 9999999999999999987 699999999997  58999999999999


Q ss_pred             EEEcccCccccceeeeeeecCCcCCEEEEEe--cCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc
Q 009993          342 MYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML  419 (520)
Q Consensus       342 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (520)
                      +||+.+..      ..... .|...+..++|  ++.++++|+ ||.|++||++++...                  ....
T Consensus       376 vwd~~~~~------~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~------------------~~~~  429 (464)
T 3v7d_B          376 GWDANDYS------RKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV------------------HANI  429 (464)
T ss_dssp             EEETTTCC------EEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEE------------------ESCT
T ss_pred             EEECCCCc------eeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEE------------------ehhh
Confidence            99998873      22222 24444555555  567888888 899999999985221                  1224


Q ss_pred             cCcceeeEEEEecCC-EEEEecCCCeEEEE
Q 009993          420 HGFECNLLSVDIGAD-RIVCGGEEGIVRIW  448 (520)
Q Consensus       420 ~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iw  448 (520)
                      .+|...|.++.++++ .+++++.||.+.+|
T Consensus       430 ~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          430 LKDADQIWSVNFKGKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             TTTCSEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred             ccCCCcEEEEEecCCEEEEEEEeCCeEEEE
Confidence            567788999999988 45555667765554

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.1e-34  Score=281.34  Aligned_cols=286  Identities=15%  Similarity=0.194  Sum_probs=228.2

Q ss_pred             hhhccccccEEEEEEccC----CCEEEEEeCCCeEEEEECCCCcEEEEeCC-----CCceEEEE--ecC----CCEEEEE
Q 009993          136 DVLYGHTEAVLTVFVLAS----AKLLFTSGYDSIVRMWHLEDGFSIASSKP-----LGCTIRAV--AAD----KKLLVAG  200 (520)
Q Consensus       136 ~~l~~h~~~V~~l~~~~~----~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-----~~~~v~~~--~~~----~~~l~sg  200 (520)
                      ....+|.+.|++++|+|+    ...+++++.++.|++||+.+++.+..+..     |...|.++  +++    +.+|++|
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence            345699999999999984    45677777778999999998877766643     44556655  466    6699999


Q ss_pred             eCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCCcEEEEe----
Q 009993          201 GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVL----  273 (520)
Q Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~----  273 (520)
                      +.||.|++||+.++.             ....+.+|...|.+++|   ++.+|++|+.||+|++||+++++.+..+    
T Consensus        92 ~~dg~i~v~d~~~~~-------------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  158 (366)
T 3k26_A           92 GSRGIIRIINPITMQ-------------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE  158 (366)
T ss_dssp             ETTCEEEEECTTTCC-------------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTT
T ss_pred             cCCCEEEEEEchhce-------------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccc
Confidence            999999999987653             45567789999999999   4589999999999999999999999887    


Q ss_pred             eeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEee---------------------------cccccceEEEE
Q 009993          274 RHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVN---------------------------GAHVGNTKSLA  323 (520)
Q Consensus       274 ~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~---------------------------~~~~~~i~~l~  323 (520)
                      .|...|.++.  +++.++++++ |+.|++||+++++....+.                           .+|...|.+++
T Consensus       159 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  238 (366)
T 3k26_A          159 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR  238 (366)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE
T ss_pred             cccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEE
Confidence            3889999988  7889999998 9999999999876543222                           13889999999


Q ss_pred             ecCCCCEEEEEeCCCeEEEEEcccCccc--------cceeeeeeecCCcCCEEEEEec----CCEEEEEeCCCcEEEEeC
Q 009993          324 RSHTGDFLFTGGEDGAIHMYEIINDCTE--------ANVLLVATWIPHTGPVNSLAFE----FPWLVSAAGDGKLSLIDV  391 (520)
Q Consensus       324 ~s~~~~~l~tg~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~  391 (520)
                      |+  ++++++++.||.|++||+++....        .....+..+..|...|++++|+    +.+|++|+.||.|++||+
T Consensus       239 ~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~  316 (366)
T 3k26_A          239 WL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDL  316 (366)
T ss_dssp             EE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEEC
T ss_pred             Ec--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEEC
Confidence            98  789999999999999999876421        1224477788899999999995    579999999999999999


Q ss_pred             CcccccCCCCCCCceeeeeecCCCcccccCc--ceeeEEEEec--CCEEEEecCCCeEEEEeCC
Q 009993          392 RKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF--ECNLLSVDIG--ADRIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~  451 (520)
                      .+....               ......+.+|  ...|.++.++  +.+|++|+.||.|++||+.
T Consensus       317 ~~~~~~---------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          317 EVEDPH---------------KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             CSSSGG---------------GCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCCCCc---------------cccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            874221               1111233444  5667776665  4599999999999999985

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.3e-34  Score=279.88  Aligned_cols=283  Identities=19%  Similarity=0.216  Sum_probs=223.9

Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC-CCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCc
Q 009993          139 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP-LGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVL  215 (520)
Q Consensus       139 ~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~  215 (520)
                      .+|.+.+.+..+++++..+++++.|+.|++||+.+++....+.. |...|.++.  +++.+|++|+.||.|++||+.++.
T Consensus        88 ~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~  167 (401)
T 4aez_A           88 PGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT  167 (401)
T ss_dssp             TTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             CCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe
Confidence            46766544433444456688899999999999999998877765 777777665  899999999999999999987653


Q ss_pred             ceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECC-CCcEEEEee-eccCEEEEe--eCCCEEEE
Q 009993          216 PHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRA-LLKCLKVLR-HSDWVYGLA--PHDTTVAS  291 (520)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~-~~~~v~~~~--~~~~~l~~  291 (520)
                                   ....+.+|...|.+++|+++.+++|+.||.|++||++ ....+..+. |...|.++.  +++.++++
T Consensus       168 -------------~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  234 (401)
T 4aez_A          168 -------------KLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLAS  234 (401)
T ss_dssp             -------------EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             -------------EEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEE
Confidence                         5567779999999999999999999999999999998 455566665 899999887  78999999


Q ss_pred             Ec-CCeEEEEECCCCeeeEEeecccccceEEEEecCCC-CEEEEEe--CCCeEEEEEcccCccccceeeeeeecCCcCCE
Q 009993          292 TS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG-DFLFTGG--EDGAIHMYEIINDCTEANVLLVATWIPHTGPV  367 (520)
Q Consensus       292 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~tg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v  367 (520)
                      ++ |+.|++||+++++.+..+. +|...|.+++|+|++ .++++|+  .|+.|++||++++      ..+..+. +...|
T Consensus       235 ~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~------~~~~~~~-~~~~v  306 (401)
T 4aez_A          235 GGNDNVVQIWDARSSIPKFTKT-NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG------ARVNTVD-AGSQV  306 (401)
T ss_dssp             EETTSCEEEEETTCSSEEEEEC-CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC------CEEEEEE-CSSCE
T ss_pred             EeCCCeEEEccCCCCCccEEec-CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC------CEEEEEe-CCCcE
Confidence            99 8999999999999888886 599999999999976 4666655  7999999999988      5555554 56789


Q ss_pred             EEEEecC--CEEEEE--eCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEec--CCEEEEecC
Q 009993          368 NSLAFEF--PWLVSA--AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGE  441 (520)
Q Consensus       368 ~~l~~~~--~~l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~  441 (520)
                      ++++|+|  .+++++  +.||.|++||+.+....                 ....+.+|...|.++.++  +.+|++++.
T Consensus       307 ~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~-----------------~~~~~~~h~~~v~~~~~s~dg~~l~s~~~  369 (401)
T 4aez_A          307 TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT-----------------KQVDIPAHDTRVLYSALSPDGRILSTAAS  369 (401)
T ss_dssp             EEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE-----------------EEEEEECCSSCCCEEEECTTSSEEEEECT
T ss_pred             EEEEECCCCCeEEEEeecCCCcEEEEecCCccce-----------------eEEEecCCCCCEEEEEECCCCCEEEEEeC
Confidence            9999976  678884  48999999999863211                 111235666666666654  559999999


Q ss_pred             CCeEEEEeCCchHhHHHH
Q 009993          442 EGIVRIWNFSQAFEIERR  459 (520)
Q Consensus       442 Dg~v~iwd~~~~~~~~~~  459 (520)
                      ||.|++|++.++..+.+.
T Consensus       370 dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          370 DENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             TSEEEEEECCC-------
T ss_pred             CCcEEEEECCCCcccccc
Confidence            999999999998876654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.4e-34  Score=274.55  Aligned_cols=281  Identities=12%  Similarity=0.103  Sum_probs=229.4

Q ss_pred             hhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc---EEEEeCCCCceEEEEe--cCCC-EEEEEeCCCcEEEEE
Q 009993          137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF---SIASSKPLGCTIRAVA--ADKK-LLVAGGTDGFIHCWR  210 (520)
Q Consensus       137 ~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~---~~~~~~~~~~~v~~~~--~~~~-~l~sg~~dg~i~vwd  210 (520)
                      ...+|.+.|++++|+|++++|++|+.|+.|++|++.++.   ....+.+|...|.++.  ++++ +|++|+.||.|++||
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd   85 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence            456899999999999999999999999999999998877   3445557887777665  8999 999999999999999


Q ss_pred             c-ccCcceeeeccCCccccceEEecc--CCCCeEEEEEc-CCEEEEEecCCeEEEEECCC---------CcEEEEeeecc
Q 009993          211 A-VEVLPHLFDISGSEKQNTQFRLWE--HEGPITSLALD-LTRIYSGSWDMTVRVWDRAL---------LKCLKVLRHSD  277 (520)
Q Consensus       211 ~-~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~-~~~l~s~s~dg~v~iwd~~~---------~~~~~~~~~~~  277 (520)
                      + .++              ....+.+  |...|.+++|. ++.+++++.|+.|++||+++         ++++..+.+..
T Consensus        86 ~~~~~--------------~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  151 (342)
T 1yfq_A           86 LIGSP--------------SFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKN  151 (342)
T ss_dssp             SSSSS--------------SEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCC
T ss_pred             eccCC--------------ceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCC
Confidence            8 765              2356667  99999999996 78999999999999999988         77777777889


Q ss_pred             CEEEEeeCCCEEEEEc-CCeEEEEECCC-Cee-eEEeecccccceEEEEecC-CCCEEEEEeCCCeEEEEEcccCccccc
Q 009993          278 WVYGLAPHDTTVASTS-GSDVYIWDTNS-GCL-LTVVNGAHVGNTKSLARSH-TGDFLFTGGEDGAIHMYEIINDCTEAN  353 (520)
Q Consensus       278 ~v~~~~~~~~~l~~~~-d~~i~iwd~~~-~~~-~~~~~~~~~~~i~~l~~s~-~~~~l~tg~~dg~i~iwd~~~~~~~~~  353 (520)
                      .|.++...+..+++++ ++.|++||+++ +.. .......|...+.+++|+| +++++++|+.||.|++|+++.......
T Consensus       152 ~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~  231 (342)
T 1yfq_A          152 KIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN  231 (342)
T ss_dssp             CEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred             ceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence            9999996666688777 99999999998 543 3333346888999999999 999999999999999999987611100


Q ss_pred             eeeeeeecCCcC---------CEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCc
Q 009993          354 VLLVATWIPHTG---------PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF  422 (520)
Q Consensus       354 ~~~~~~~~~h~~---------~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (520)
                      ......+..|..         .|++++|+|  ++|++|+.||.|++||+.++.                   ....+.+|
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-------------------~~~~~~~~  292 (342)
T 1yfq_A          232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK-------------------KIKNFAKF  292 (342)
T ss_dssp             CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE-------------------EEEECCCC
T ss_pred             cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh-------------------Hhhhhhcc
Confidence            134555666654         999999976  689999999999999998742                   23335566


Q ss_pred             -ceeeEEEEecCCEEEEecCCCe-EEEEeC
Q 009993          423 -ECNLLSVDIGADRIVCGGEEGI-VRIWNF  450 (520)
Q Consensus       423 -~~~v~~~~~~~~~l~sg~~Dg~-v~iwd~  450 (520)
                       ...|.++.+++.+|++|+.||. .+.|..
T Consensus       293 h~~~v~~~~~~~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          293 NEDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             SSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             cCCCceEecCCCCeEEEEecCCcccccccc
Confidence             7788888888889999999998 554443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=8.4e-34  Score=269.12  Aligned_cols=266  Identities=21%  Similarity=0.311  Sum_probs=223.9

Q ss_pred             hhhhhhcCCCCCCCC-CCCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 009993          106 EFYCERWGLPIASAP-LGAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS  180 (520)
Q Consensus       106 ~~~~~~~~~~~~~~~-~~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~  180 (520)
                      .+.+..|. |+.... ..+.+...++|+    +....+.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+
T Consensus        25 ~v~~~~~s-~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  103 (312)
T 4ery_A           25 AVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL  103 (312)
T ss_dssp             CEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             cEEEEEEC-CCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEE
Confidence            34566676 444433 233455668887    456778999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecC
Q 009993          181 KPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD  256 (520)
Q Consensus       181 ~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d  256 (520)
                      .+|...|.++.  +++++|++|+.||.|++||+.++.             ....+..|..+|.+++|  ++.++++++.|
T Consensus       104 ~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
T 4ery_A          104 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  170 (312)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-------------EEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-------------EEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence            99998887765  899999999999999999997753             45667789999999999  67899999999


Q ss_pred             CeEEEEECCCCcEEEEee--eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccce---EEEEecCCC
Q 009993          257 MTVRVWDRALLKCLKVLR--HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNT---KSLARSHTG  328 (520)
Q Consensus       257 g~v~iwd~~~~~~~~~~~--~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i---~~l~~s~~~  328 (520)
                      |.|++||+++++.+..+.  +...+..+.  ++++++++++ |+.|++||+++++.+..+. +|....   ......+++
T Consensus       171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  249 (312)
T 4ery_A          171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSVTGG  249 (312)
T ss_dssp             SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC-SSCCSSSCCCEEEECSSS
T ss_pred             CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE-ecCCceEEEEEEEEeCCC
Confidence            999999999998887764  556677665  8899999998 9999999999999988886 465433   223334678


Q ss_pred             CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEe--CCCcEEEEeCC
Q 009993          329 DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAA--GDGKLSLIDVR  392 (520)
Q Consensus       329 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s--~dg~i~vwd~~  392 (520)
                      .+|++|+.||.|++||+.++      ..+..+.+|...|.+++|+|  ++|++++  .|+.|++|+..
T Consensus       250 ~~l~sg~~dg~i~vwd~~~~------~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          250 KWIVSGSEDNLVYIWNLQTK------EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CEEEECCTTSCEEEEETTTC------CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             cEEEEECCCCEEEEEECCCc------hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            89999999999999999988      67888999999999999987  6888887  69999999864

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1e-33  Score=278.66  Aligned_cols=287  Identities=17%  Similarity=0.231  Sum_probs=221.8

Q ss_pred             HhhhhhccccccEEEEEEcc-CCCEEEEEeCCCeEEEEECCCCcEEEEe-------------CCCCceEEEEe--c-CCC
Q 009993          133 ELIDVLYGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDGFSIASS-------------KPLGCTIRAVA--A-DKK  195 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~-~~~~l~sgs~dg~v~vwd~~~~~~~~~~-------------~~~~~~v~~~~--~-~~~  195 (520)
                      +....+.+|.+.|++++|+| ++++|++|+.||.|++||+.++.....+             .+|...|.++.  + ++.
T Consensus        34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  113 (408)
T 4a11_B           34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG  113 (408)
T ss_dssp             TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred             cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence            34567889999999999999 9999999999999999999988655443             25888888776  6 778


Q ss_pred             EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-----cCCEEEEEecCCeEEEEECCCCcEE
Q 009993          196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-----DLTRIYSGSWDMTVRVWDRALLKCL  270 (520)
Q Consensus       196 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-----~~~~l~s~s~dg~v~iwd~~~~~~~  270 (520)
                      +|++++.||.|++||+.++.             .. ....+...+.++.+     ++.++++++.|+.|++||+++++.+
T Consensus       114 ~l~s~~~d~~i~iwd~~~~~-------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  179 (408)
T 4a11_B          114 MFTSSSFDKTLKVWDTNTLQ-------------TA-DVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS  179 (408)
T ss_dssp             CEEEEETTSEEEEEETTTTE-------------EE-EEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC
T ss_pred             EEEEEeCCCeEEEeeCCCCc-------------cc-eeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee
Confidence            99999999999999997753             22 22347788999998     3348999999999999999999988


Q ss_pred             EEee-eccCEEEEe--eCCC-EEEEEc-CCeEEEEECCCCe-eeEEee--------------cccccceEEEEecCCCCE
Q 009993          271 KVLR-HSDWVYGLA--PHDT-TVASTS-GSDVYIWDTNSGC-LLTVVN--------------GAHVGNTKSLARSHTGDF  330 (520)
Q Consensus       271 ~~~~-~~~~v~~~~--~~~~-~l~~~~-d~~i~iwd~~~~~-~~~~~~--------------~~~~~~i~~l~~s~~~~~  330 (520)
                      ..+. |...|.++.  +++. ++++++ |+.|++||++++. .+..+.              .+|...|.+++|+|++++
T Consensus       180 ~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  259 (408)
T 4a11_B          180 HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH  259 (408)
T ss_dssp             EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE
T ss_pred             eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE
Confidence            8887 889999988  6776 577877 9999999998875 333331              358889999999999999


Q ss_pred             EEEEeCCCeEEEEEcccCccccceeeeeeecCC------cCCEEEEEe-cCCEEEEEeCCCcEEEEeCCcccccCCCCCC
Q 009993          331 LFTGGEDGAIHMYEIINDCTEANVLLVATWIPH------TGPVNSLAF-EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSG  403 (520)
Q Consensus       331 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h------~~~v~~l~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  403 (520)
                      |++++.||.|++||+.++..      ......+      ......... ....+++++.|+.|++||+.++         
T Consensus       260 l~~~~~dg~i~vwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------  324 (408)
T 4a11_B          260 LLTVGTDNRMRLWNSSNGEN------TLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---------  324 (408)
T ss_dssp             EEEEETTSCEEEEETTTCCB------CCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---------
T ss_pred             EEEecCCCeEEEEECCCCcc------ceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC---------
Confidence            99999999999999998742      2222111      111122222 2367778888999999999873         


Q ss_pred             CceeeeeecCCCcccccCcceeeEEEEec--CCEEEEecCCCeEEEEeCCchHhHHH
Q 009993          404 KRVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQAFEIER  458 (520)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~~~~~~~~  458 (520)
                                .....+.+|...|.++.++  +.+|++|+.||.|++||+.+++.+..
T Consensus       325 ----------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~  371 (408)
T 4a11_B          325 ----------EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPD  371 (408)
T ss_dssp             ----------CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred             ----------cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence                      3344456777777776665  45999999999999999999876654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=4.2e-35  Score=291.40  Aligned_cols=284  Identities=14%  Similarity=0.052  Sum_probs=205.9

Q ss_pred             hhhhccccccEEEEEEcc-CCCEEEEEeCCCeEEEEECCCCcE--EEEeCCCCceEEEEe--c-CCCEEEEEeCCCcEEE
Q 009993          135 IDVLYGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDGFS--IASSKPLGCTIRAVA--A-DKKLLVAGGTDGFIHC  208 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~-~~~~l~sgs~dg~v~vwd~~~~~~--~~~~~~~~~~v~~~~--~-~~~~l~sg~~dg~i~v  208 (520)
                      .....+|...|+||+|+| ++++||+|+.||+|+|||+.++..  ...+.+|...|.++.  | ++++|++|+.||+|++
T Consensus       112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i  191 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL  191 (435)
T ss_dssp             CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred             cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence            345678999999999999 567999999999999999987754  445568988888776  4 6889999999999999


Q ss_pred             EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--
Q 009993          209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--  283 (520)
Q Consensus       209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--  283 (520)
                      ||++++...           .......+...+.+++|  ++.+|++|+.||+|++||++.. .+..+. |...|.++.  
T Consensus       192 wd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~v~~~  259 (435)
T 4e54_B          192 QDFKGNILR-----------VFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHVALN  259 (435)
T ss_dssp             EETTSCEEE-----------EEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEEEEEC
T ss_pred             eeccCCcee-----------EEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEEecccceEEeeeec
Confidence            998764211           11112234456778888  7789999999999999999754 444454 899999988  


Q ss_pred             eCCC-EEEEEc-CCeEEEEECCCCeeeEEee--cccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeee
Q 009993          284 PHDT-TVASTS-GSDVYIWDTNSGCLLTVVN--GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT  359 (520)
Q Consensus       284 ~~~~-~l~~~~-d~~i~iwd~~~~~~~~~~~--~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~  359 (520)
                      |++. ++++++ |+.|++||+++++....+.  .+|...|++++|+|+|.+|++|+.||.|++||+.++.      ....
T Consensus       260 p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~------~~~~  333 (435)
T 4e54_B          260 PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWD------CPLG  333 (435)
T ss_dssp             TTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSS------SEEE
T ss_pred             CCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCc------cceE
Confidence            5554 777887 9999999998876543332  3689999999999999999999999999999999873      3333


Q ss_pred             ecCCcC------CEEEEEecC--CEEEEEe------------CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc
Q 009993          360 WIPHTG------PVNSLAFEF--PWLVSAA------------GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML  419 (520)
Q Consensus       360 ~~~h~~------~v~~l~~~~--~~l~s~s------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (520)
                      +..|..      .+....|++  ..+++++            .++.|++||..++...                  ....
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~------------------~~l~  395 (435)
T 4e54_B          334 LIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMM------------------CQLY  395 (435)
T ss_dssp             ECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEE------------------EEEC
T ss_pred             EecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEE------------------EEEe
Confidence            433321      122334443  3444443            3467999999874221                  1112


Q ss_pred             cCcceeeE---EEEecCCEEEEecCCCeEEEEeCCchHh
Q 009993          420 HGFECNLL---SVDIGADRIVCGGEEGIVRIWNFSQAFE  455 (520)
Q Consensus       420 ~~~~~~v~---~~~~~~~~l~sg~~Dg~v~iwd~~~~~~  455 (520)
                      .+|...|.   ++++++.+|++|+ |+.|+||++++++.
T Consensus       396 ~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          396 DPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             CSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred             CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence            34444443   4566777888876 78999999998754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.4e-35  Score=287.65  Aligned_cols=274  Identities=19%  Similarity=0.262  Sum_probs=223.1

Q ss_pred             cCcchhhhhhhhhcCCCCCCC-CCCCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 009993           99 SDHHAWKEFYCERWGLPIASA-PLGAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED  173 (520)
Q Consensus        99 ~~~~lW~~~~~~~~~~~~~~~-~~~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~  173 (520)
                      ..|.  ..+++..|. |+... ..++.+...++|+    +....+++|...|.+++|+|++++|++|+.|+.|++||+.+
T Consensus        63 ~gH~--~~V~~~~~s-p~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~  139 (380)
T 3iz6_a           63 QGHS--GKVYSLDWT-PEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSS  139 (380)
T ss_dssp             CCCS--SCEEEEEEC-TTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCC
T ss_pred             cccc--cEEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCC
Confidence            3444  346788887 45443 3344456679998    44677899999999999999999999999999999999975


Q ss_pred             Cc-------EEEEeCCCCceEEEEe--cC-CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEe-----ccCCC
Q 009993          174 GF-------SIASSKPLGCTIRAVA--AD-KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL-----WEHEG  238 (520)
Q Consensus       174 ~~-------~~~~~~~~~~~v~~~~--~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~  238 (520)
                      ..       ....+.+|...+.++.  |+ +..|++|+.|++|++||+.++..             ...+     .+|..
T Consensus       140 ~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~-------------~~~~~~~~~~~h~~  206 (380)
T 3iz6_a          140 QADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR-------------ISIFGSEFPSGHTA  206 (380)
T ss_dssp             CSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE-------------EEEECCCSSSSCCS
T ss_pred             CccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE-------------EEEeecccCCCCcc
Confidence            32       3345678888777665  44 56799999999999999987642             2222     57999


Q ss_pred             CeEEEEE---cCCEEEEEecCCeEEEEECC-CCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEE
Q 009993          239 PITSLAL---DLTRIYSGSWDMTVRVWDRA-LLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTV  310 (520)
Q Consensus       239 ~v~~l~~---~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~  310 (520)
                      .|.++++   +++++++|+.|++|++||++ ..+.+..+. |...|.++.  |++.+|++++ |++|++||+++++.+..
T Consensus       207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~  286 (380)
T 3iz6_a          207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV  286 (380)
T ss_dssp             CEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEE
T ss_pred             CeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEE
Confidence            9999999   56899999999999999998 456667665 889999887  8899999999 99999999999998887


Q ss_pred             eecc------cccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeee----cCCcCCEEEEEecC--CEEE
Q 009993          311 VNGA------HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW----IPHTGPVNSLAFEF--PWLV  378 (520)
Q Consensus       311 ~~~~------~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~~--~~l~  378 (520)
                      +...      +...|++++|+|+|++|++|+.||.|++||+..+      ..+..+    .+|.+.|++++|+|  .+|+
T Consensus       287 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~------~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~  360 (380)
T 3iz6_a          287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA------EMVLNLGTLQNSHEGRISCLGLSSDGSALC  360 (380)
T ss_dssp             ECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC------CEEEEECCSCSSCCCCCCEEEECSSSSEEE
T ss_pred             ecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC------ceEEEEecccCCCCCceEEEEECCCCCEEE
Confidence            7531      1234899999999999999999999999999887      344444    68999999999976  6999


Q ss_pred             EEeCCCcEEEEeCCcc
Q 009993          379 SAAGDGKLSLIDVRKL  394 (520)
Q Consensus       379 s~s~dg~i~vwd~~~~  394 (520)
                      +|+.||+|++|++...
T Consensus       361 sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          361 TGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             EECTTSCEEEEECCSS
T ss_pred             EeeCCCCEEEEecCCC
Confidence            9999999999998763

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=5.1e-34  Score=283.67  Aligned_cols=256  Identities=23%  Similarity=0.351  Sum_probs=225.2

Q ss_pred             CCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEE
Q 009993          124 GFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVA  199 (520)
Q Consensus       124 ~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s  199 (520)
                      .+...++|+    +....+.+|.+.|++++|  ++++|++|+.||+|++||+.+++.+..+.+|...|.++..++..+++
T Consensus       151 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s  228 (435)
T 1p22_A          151 RDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVT  228 (435)
T ss_dssp             SSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEE
T ss_pred             CCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEE
Confidence            345568887    457788999999999998  78999999999999999999999999999999999999988999999


Q ss_pred             EeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee-eccC
Q 009993          200 GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDW  278 (520)
Q Consensus       200 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~  278 (520)
                      |+.||.|++||+.++..          ......+.+|...|.+++++++++++|+.||+|++||+++++.+..+. |...
T Consensus       229 ~s~dg~i~vwd~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  298 (435)
T 1p22_A          229 CSKDRSIAVWDMASPTD----------ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG  298 (435)
T ss_dssp             EETTSCEEEEECSSSSC----------CEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             eeCCCcEEEEeCCCCCC----------ceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCc
Confidence            99999999999977532          123356779999999999999999999999999999999999999887 8899


Q ss_pred             EEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccc---e
Q 009993          279 VYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN---V  354 (520)
Q Consensus       279 v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~---~  354 (520)
                      |.++..++.++++++ |+.|++||+++++.+..+. +|...|.+++|  ++.+|++|+.||.|++||+.++.....   .
T Consensus       299 v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~  375 (435)
T 1p22_A          299 IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGT  375 (435)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTT
T ss_pred             EEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEe-CCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccc
Confidence            999999999999999 9999999999999999887 69999999999  789999999999999999987632111   1


Q ss_pred             eeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcc
Q 009993          355 LLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       355 ~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~  394 (520)
                      .++..+.+|.+.|++++|++.+|++|+.||.|++||+.+.
T Consensus       376 ~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~  415 (435)
T 1p22_A          376 LCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLND  415 (435)
T ss_dssp             TEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC----
T ss_pred             hheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCC
Confidence            1677889999999999999999999999999999999875

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.5e-34  Score=296.92  Aligned_cols=300  Identities=17%  Similarity=0.209  Sum_probs=246.5

Q ss_pred             hhhhcCCCCCCCCCCCCCCCcccHH--------Hhhhhhcccccc-EEEEEEcc--CCCEEEEEeCCCeEEEEECCCC--
Q 009993          108 YCERWGLPIASAPLGAGFSDDKSWK--------ELIDVLYGHTEA-VLTVFVLA--SAKLLFTSGYDSIVRMWHLEDG--  174 (520)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~W~--------~~~~~l~~h~~~-V~~l~~~~--~~~~l~sgs~dg~v~vwd~~~~--  174 (520)
                      .+..|. |+.......+.....+|+        +....+.+|.+. |++++|+|  ++++|++|+.||+|++||+.++  
T Consensus        22 ~~~~~s-pdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~  100 (615)
T 1pgu_A           22 THLSYD-PTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKE  100 (615)
T ss_dssp             CCCEEE-TTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGG
T ss_pred             eEEEEC-CCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcc
Confidence            445555 444444443444556675        256778999999 99999999  9999999999999999999755  


Q ss_pred             ------cEEEEeCCCCceEEEEe--cCCCEEEEEeCC----CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEE
Q 009993          175 ------FSIASSKPLGCTIRAVA--ADKKLLVAGGTD----GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITS  242 (520)
Q Consensus       175 ------~~~~~~~~~~~~v~~~~--~~~~~l~sg~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  242 (520)
                            ..+..+..|...|.++.  +++++|++++.+    +.|.+||.  +             .....+.+|...|.+
T Consensus       101 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~-------------~~~~~~~~~~~~v~~  165 (615)
T 1pgu_A          101 SNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--G-------------NSLGEVSGHSQRINA  165 (615)
T ss_dssp             GTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--C-------------CEEEECCSCSSCEEE
T ss_pred             cccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--C-------------CcceeeecCCccEEE
Confidence                  66777888888887765  999999999988    68888873  2             245667899999999


Q ss_pred             EEE--cCC-EEEEEecCCeEEEEECCCCcEEEEee-ecc---CEEEEe--eC-CCEEEEEc-CCeEEEEECCCCeeeEEe
Q 009993          243 LAL--DLT-RIYSGSWDMTVRVWDRALLKCLKVLR-HSD---WVYGLA--PH-DTTVASTS-GSDVYIWDTNSGCLLTVV  311 (520)
Q Consensus       243 l~~--~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~---~v~~~~--~~-~~~l~~~~-d~~i~iwd~~~~~~~~~~  311 (520)
                      ++|  ++. .+++++.|+.|++||..+++.+..+. |..   .|.++.  ++ ++++++++ |+.|++||+++++.+..+
T Consensus       166 ~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  245 (615)
T 1pgu_A          166 CHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI  245 (615)
T ss_dssp             EEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred             EEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence            999  444 89999999999999999999998887 777   898887  77 88999988 999999999999999888


Q ss_pred             ec---ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCC----cCCEEEEEe-cCCEEEEEeCC
Q 009993          312 NG---AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH----TGPVNSLAF-EFPWLVSAAGD  383 (520)
Q Consensus       312 ~~---~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h----~~~v~~l~~-~~~~l~s~s~d  383 (520)
                      ..   +|...|.+++|+ ++.+|++++.||.|++||++++      ..+..+..+    ...+.++.| ++.++++++.|
T Consensus       246 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  318 (615)
T 1pgu_A          246 EDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS------KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD  318 (615)
T ss_dssp             CBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT------EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETT
T ss_pred             cccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC------cEEEEEcCCCCcccCceeEEEeCCCCeEEEEECC
Confidence            44   699999999999 9999999999999999999988      566666655    467888888 67899999999


Q ss_pred             CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCC
Q 009993          384 GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       384 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~  451 (520)
                      |.|++||+.+..                   ....+.+|...+.++.+ ++ +++++.||.|++|++.
T Consensus       319 g~i~~~d~~~~~-------------------~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~  365 (615)
T 1pgu_A          319 GTLNFYELGHDE-------------------VLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSSS  365 (615)
T ss_dssp             SCEEEEETTEEE-------------------EEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTTT
T ss_pred             CCEEEEECCCCc-------------------EEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEch
Confidence            999999998732                   22344567777777777 77 8888888888888876

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.6e-34  Score=271.92  Aligned_cols=244  Identities=15%  Similarity=0.146  Sum_probs=192.7

Q ss_pred             hhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc--EEEEeCCCCceEEEEe--c--CCCEEEEEeCCCcEEEE
Q 009993          136 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVA--A--DKKLLVAGGTDGFIHCW  209 (520)
Q Consensus       136 ~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~--~--~~~~l~sg~~dg~i~vw  209 (520)
                      ..+.+|.+.|++++|+|+|++|++|+.|++|+|||+.++.  .+..+.+|...|.++.  +  ++++|++|+.|++|++|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            4568999999999999999999999999999999998875  4677899999998876  3  38899999999999999


Q ss_pred             EcccCcceeeeccCCccccceEEeccCCCCeEEEEEc----CCEEEEEecCCeEEEEECCCCcEE---EEee-eccCEEE
Q 009993          210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD----LTRIYSGSWDMTVRVWDRALLKCL---KVLR-HSDWVYG  281 (520)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~v~iwd~~~~~~~---~~~~-~~~~v~~  281 (520)
                      |+.++.           ......+.+|...|.+++|+    +.+|++|+.|++|++||++++...   ..+. |...|.+
T Consensus        87 d~~~~~-----------~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~  155 (316)
T 3bg1_A           87 REENGT-----------WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNA  155 (316)
T ss_dssp             CCSSSC-----------CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCC
T ss_pred             ECCCCc-----------ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcce
Confidence            987652           12445677899999999993    568999999999999999876432   2222 6667766


Q ss_pred             Ee--eC-----------------CCEEEEEc-CCeEEEEECCCC---eeeEEeecccccceEEEEecCCC----CEEEEE
Q 009993          282 LA--PH-----------------DTTVASTS-GSDVYIWDTNSG---CLLTVVNGAHVGNTKSLARSHTG----DFLFTG  334 (520)
Q Consensus       282 ~~--~~-----------------~~~l~~~~-d~~i~iwd~~~~---~~~~~~~~~~~~~i~~l~~s~~~----~~l~tg  334 (520)
                      +.  |+                 +.+|++++ |+.|++||++.+   +.+..+. +|...|.+++|+|++    .+|++|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~-~h~~~V~~v~~sp~~~~~~~~las~  234 (316)
T 3bg1_A          156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE-AHSDWVRDVAWAPSIGLPTSTIASC  234 (316)
T ss_dssp             CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB-CCSSCEEEEECCCCSSCSCCEEEEE
T ss_pred             EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc-cCCCceEEEEecCCCCCCCceEEEE
Confidence            65  43                 36788888 999999999765   3455554 799999999999986    899999


Q ss_pred             eCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993          335 GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  393 (520)
                      +.||+|++|++.+.....  .....+..|...|.+++|+|  ++|++++.||.|++|+...
T Consensus       235 s~D~~v~iw~~~~~~~~~--~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          235 SQDGRVFIWTCDDASSNT--WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             ETTCEEEEEECSSTTCCC--CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             cCCCeEEEEEccCccccc--hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            999999999997632100  11233457889999999986  6999999999999999753

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-33  Score=299.71  Aligned_cols=234  Identities=12%  Similarity=0.056  Sum_probs=185.2

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV  212 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~  212 (520)
                      .....||.+.|++++|+|++++||+|+.||+|+||+..+.+....+ .|...|.++.  + +++|++++.|++|++||+.
T Consensus        10 ~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~   87 (902)
T 2oaj_A           10 ETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY   87 (902)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETT
T ss_pred             cccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECC
Confidence            3345699999999999999999999999999999999887766554 3666676655  7 7899999999999999998


Q ss_pred             cCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEE-----------Eee-eccC
Q 009993          213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLK-----------VLR-HSDW  278 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~-----------~~~-~~~~  278 (520)
                      ++.             ....+ .|.+.|++++|  +++++++|+.||+|++||++++++..           .+. |...
T Consensus        88 ~~~-------------~~~~~-~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~  153 (902)
T 2oaj_A           88 SQK-------------VLTTV-FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSP  153 (902)
T ss_dssp             TCS-------------EEEEE-ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCC
T ss_pred             CCc-------------EEEEE-cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCC
Confidence            763             23333 36789999999  77899999999999999999887641           112 6788


Q ss_pred             EEEEe--eC-CCEEEEEc-CCeEEEEECCCCeeeEEeec-----------------ccccceEEEEecCCCCEEEEEeCC
Q 009993          279 VYGLA--PH-DTTVASTS-GSDVYIWDTNSGCLLTVVNG-----------------AHVGNTKSLARSHTGDFLFTGGED  337 (520)
Q Consensus       279 v~~~~--~~-~~~l~~~~-d~~i~iwd~~~~~~~~~~~~-----------------~~~~~i~~l~~s~~~~~l~tg~~d  337 (520)
                      |.+++  |+ +..+++++ |+.| +||+++++.+..+..                 .|...|++++|+|+|.+|++|+.|
T Consensus       154 V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~D  232 (902)
T 2oaj_A          154 IVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHED  232 (902)
T ss_dssp             CCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETT
T ss_pred             eEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECC
Confidence            98888  43 36788888 8999 999999998887752                 135779999999999999999999


Q ss_pred             CeEEEEEcccCccccceeeee--ee---c-------------CCcCCEEEEEec----C---CEEEEEeCC-----CcEE
Q 009993          338 GAIHMYEIINDCTEANVLLVA--TW---I-------------PHTGPVNSLAFE----F---PWLVSAAGD-----GKLS  387 (520)
Q Consensus       338 g~i~iwd~~~~~~~~~~~~~~--~~---~-------------~h~~~v~~l~~~----~---~~l~s~s~d-----g~i~  387 (520)
                      |+|++||++++.      ++.  .+   .             .|..+|++++|.    |   ..|++|+.|     ..+.
T Consensus       233 g~i~lWd~~~g~------~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~  306 (902)
T 2oaj_A          233 NSLVFWDANSGH------MIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLT  306 (902)
T ss_dssp             CCEEEEETTTCC------EEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEE
T ss_pred             CeEEEEECCCCc------EEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEE
Confidence            999999998873      222  11   1             135579999993    3   357777665     3788


Q ss_pred             EEeC
Q 009993          388 LIDV  391 (520)
Q Consensus       388 vwd~  391 (520)
                      +|++
T Consensus       307 ~~~~  310 (902)
T 2oaj_A          307 MIDL  310 (902)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            8874

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.9e-33  Score=266.92  Aligned_cols=257  Identities=16%  Similarity=0.262  Sum_probs=204.3

Q ss_pred             CCCCCcccHHH-----------hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe
Q 009993          123 AGFSDDKSWKE-----------LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA  191 (520)
Q Consensus       123 ~~~~~~~~W~~-----------~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~  191 (520)
                      +.+...++|+.           ....+.+|.+.|++++|+|++.++++|+.|++|++||+.+++.+..+.+|...|.++.
T Consensus        46 s~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~  125 (343)
T 2xzm_R           46 SRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVA  125 (343)
T ss_dssp             ETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEE
T ss_pred             cCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEE
Confidence            33455688872           2456899999999999999999999999999999999999999999999999888765


Q ss_pred             --cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC------------CEEEEEecCC
Q 009993          192 --ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL------------TRIYSGSWDM  257 (520)
Q Consensus       192 --~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~------------~~l~s~s~dg  257 (520)
                        |++++|++|+.|++|++||+.....           .......+|...|.+++|.+            .++++++.||
T Consensus       126 ~sp~~~~l~s~~~d~~i~~wd~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  194 (343)
T 2xzm_R          126 FSPDNRQILSAGAEREIKLWNILGECK-----------FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG  194 (343)
T ss_dssp             ECSSTTEEEEEETTSCEEEEESSSCEE-----------EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTS
T ss_pred             ECCCCCEEEEEcCCCEEEEEeccCCce-----------eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCC
Confidence              8999999999999999999863210           00111236889999999943            5899999999


Q ss_pred             eEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCC-CeeeEEeecccccceEEEEecCCCCEEE
Q 009993          258 TVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNS-GCLLTVVNGAHVGNTKSLARSHTGDFLF  332 (520)
Q Consensus       258 ~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~l~  332 (520)
                      +|++||. +.+....+. |...|.+++  |++++|++++ |+.|++||+.. ......+.  +...|.+++|+|++.+++
T Consensus       195 ~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~--~~~~v~~v~~sp~~~~la  271 (343)
T 2xzm_R          195 RLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD--AGSTINQIAFNPKLQWVA  271 (343)
T ss_dssp             EEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE--CSSCEEEEEECSSSCEEE
T ss_pred             EEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec--CCCcEEEEEECCCCCEEE
Confidence            9999994 455555665 889999887  8899999999 99999999944 44444443  556799999999998877


Q ss_pred             EEeCCCeEEEEEcccCcccc--cee-----eeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993          333 TGGEDGAIHMYEIINDCTEA--NVL-----LVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       333 tg~~dg~i~iwd~~~~~~~~--~~~-----~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  394 (520)
                      +| .|+.|++||+.+.....  ...     ......+|...|++++|+|  ++|++|+.||.|++|++.++
T Consensus       272 ~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          272 VG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             EE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             EE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            55 57789999998764311  000     0011237888999999986  69999999999999998764

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.6e-32  Score=271.48  Aligned_cols=269  Identities=20%  Similarity=0.277  Sum_probs=218.2

Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEe--CCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeee
Q 009993          145 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS--KPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFD  220 (520)
Q Consensus       145 V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~--~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  220 (520)
                      +..|+|+++ ++|++|. |++|+|||..+|+....+  .+|...|.+++  +++++|++|+.||.|++||+.++.     
T Consensus       108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-----  180 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----  180 (420)
T ss_dssp             CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----
T ss_pred             ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-----
Confidence            567999975 5777765 999999999999887765  46776777665  999999999999999999997763     


Q ss_pred             ccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCc-EEEEee-eccCEEEEe--eCCCEEEEEc-CC
Q 009993          221 ISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLK-CLKVLR-HSDWVYGLA--PHDTTVASTS-GS  295 (520)
Q Consensus       221 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~  295 (520)
                              ....+.+|...+.++.+++..+++|+.|+.+++||..... .+..+. |...+..+.  +++.++++++ |+
T Consensus       181 --------~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~  252 (420)
T 4gga_A          181 --------RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN  252 (420)
T ss_dssp             --------EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             --------EEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccc
Confidence                    5667889999999999999999999999999999988654 445555 888888877  8899999998 99


Q ss_pred             eEEEEECCCCee----eEEeecccccceEEEEecCCCC-EEEE--EeCCCeEEEEEcccCccccceeeeeeecCCcCCEE
Q 009993          296 DVYIWDTNSGCL----LTVVNGAHVGNTKSLARSHTGD-FLFT--GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN  368 (520)
Q Consensus       296 ~i~iwd~~~~~~----~~~~~~~~~~~i~~l~~s~~~~-~l~t--g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~  368 (520)
                      .+++||..+++.    +.... .|...|.+++|+|.+. ++++  |+.|++|++||+.++      .+...+..| ..+.
T Consensus       253 ~v~i~~~~~~~~~~~~~~~~~-~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~------~~~~~~~~~-~~v~  324 (420)
T 4gga_A          253 LVNVWPSAPGEGGWVPLQTFT-QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG------ACLSAVDAH-SQVC  324 (420)
T ss_dssp             CEEEEESSCCSSCSCCSEEEC-CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT------EEEEEEECS-SCEE
T ss_pred             cceEEeeccccccceeeeeec-ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc------ccceeeccc-ccee
Confidence            999999987653    33443 6899999999999664 5554  457999999999998      566666555 4688


Q ss_pred             EEEecC--CEEEEEe--CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC--CEEEEecCC
Q 009993          369 SLAFEF--PWLVSAA--GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEE  442 (520)
Q Consensus       369 ~l~~~~--~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~D  442 (520)
                      ++.|.+  +.+++++  .|+.|+|||+.++                   .+...+.+|...|.++.+++  .+|+|||.|
T Consensus       325 ~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-------------------~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D  385 (420)
T 4gga_A          325 SILWSPHYKELISGHGFAQNQLVIWKYPTM-------------------AKVAELKGHTSRVLSLTMSPDGATVASAAAD  385 (420)
T ss_dssp             EEEEETTTTEEEEEECTTTCCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             eeeecCCCCeEEEEEecCCCEEEEEECCCC-------------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecC
Confidence            888865  5666654  7999999999873                   34455778998998887754  599999999


Q ss_pred             CeEEEEeCCchHh
Q 009993          443 GIVRIWNFSQAFE  455 (520)
Q Consensus       443 g~v~iwd~~~~~~  455 (520)
                      |+|+|||+.+...
T Consensus       386 ~tvriWdv~~~~~  398 (420)
T 4gga_A          386 ETLRLWRCFELDP  398 (420)
T ss_dssp             TEEEEECCSCSSC
T ss_pred             CeEEEEECCCCCc
Confidence            9999999976543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=8.1e-33  Score=297.20  Aligned_cols=351  Identities=13%  Similarity=0.123  Sum_probs=268.5

Q ss_pred             hhhhhcCCCCCCCCCC-CCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC
Q 009993          107 FYCERWGLPIASAPLG-AGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK  181 (520)
Q Consensus       107 ~~~~~~~~~~~~~~~~-~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~  181 (520)
                      +.|..|+ |+...... ..+...++|+    ..+..+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus        16 v~~i~~s-p~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~   94 (814)
T 3mkq_A           16 VKGIDFH-PTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE   94 (814)
T ss_dssp             EEEEEEC-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             eEEEEEC-CCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence            4567777 55444333 3344568898    3567888999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc---CCEEEEEecC
Q 009993          182 PLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGSWD  256 (520)
Q Consensus       182 ~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~d  256 (520)
                      +|...|.++.  |++.+|++|+.||.|++||+.++.            .....+.+|...|.+++|+   ++.+++++.|
T Consensus        95 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  162 (814)
T 3mkq_A           95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW------------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD  162 (814)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS------------EEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred             cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc------------eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence            9998888765  899999999999999999997652            3455677899999999994   4689999999


Q ss_pred             CeEEEEECCCCcEEEEee--eccCEEEEe--e--CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCC
Q 009993          257 MTVRVWDRALLKCLKVLR--HSDWVYGLA--P--HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD  329 (520)
Q Consensus       257 g~v~iwd~~~~~~~~~~~--~~~~v~~~~--~--~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~  329 (520)
                      |+|++||+.++.....+.  +...+.++.  +  ++.++++++ |+.|++||+.+++.+..+. +|...|.+++|+|++.
T Consensus       163 g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~  241 (814)
T 3mkq_A          163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLP  241 (814)
T ss_dssp             SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSS
T ss_pred             CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCC
Confidence            999999999888777765  446677766  5  889999999 8999999999999988887 6999999999999999


Q ss_pred             EEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCC---EEEEEeCCCcEEEEeCCcccccCCCCCCCce
Q 009993          330 FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP---WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRV  406 (520)
Q Consensus       330 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  406 (520)
                      ++++|+.||.|++||+.++      ..+..+..|...+.+++|+|+   .+++++.|+.+.+|++...............
T Consensus       242 ~l~~~~~dg~v~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  315 (814)
T 3mkq_A          242 IIISGSEDGTLKIWNSSTY------KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKL  315 (814)
T ss_dssp             EEEEEETTSCEEEEETTTC------SEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEE
T ss_pred             EEEEEeCCCeEEEEECCCC------cEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCE
Confidence            9999999999999999988      678888899999999999874   2355555777999998764322211111100


Q ss_pred             eee------------------------eecCCCcccccCcce--eeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHh
Q 009993          407 SRV------------------------IEVEPPQRMLHGFEC--NLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRA  460 (520)
Q Consensus       407 ~~~------------------------~~~~~~~~~~~~~~~--~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~  460 (520)
                      ...                        ............+..  ...++++++.++++++ ||.+.+|++.....     
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~-----  389 (814)
T 3mkq_A          316 VWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRN-----  389 (814)
T ss_dssp             EEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEE-----
T ss_pred             EEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccc-----
Confidence            000                        000001111222333  3455566667888888 89999999742211     


Q ss_pred             hhhcccccchhhhhccceeeeccCCCccccccc
Q 009993          461 RALRGIRLENRMRRRKLQTEMSSKGGRTDQCSV  493 (520)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~  493 (520)
                                ........++|+|||+.++++..
T Consensus       390 ----------~~~~~i~~~~~spdg~~la~~~~  412 (814)
T 3mkq_A          390 ----------KAFGKCQDFVWGPDSNSYALIDE  412 (814)
T ss_dssp             ----------EEEEECSEEEECTTSSCEEEECT
T ss_pred             ----------cCCCceEEEEEeCCCCeEEEEeC
Confidence                      11234568899999999887653

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=8.1e-33  Score=267.00  Aligned_cols=297  Identities=13%  Similarity=0.076  Sum_probs=214.6

Q ss_pred             hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEE-EEEeCCCcEEEEEcc
Q 009993          134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLL-VAGGTDGFIHCWRAV  212 (520)
Q Consensus       134 ~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l-~sg~~dg~i~vwd~~  212 (520)
                      .+.++.+|.+.|++++|+|||++|++|+.|+ +++|++.+++.......+...+.++.++++.+ ++|+.|++|++||..
T Consensus        11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~   89 (355)
T 3vu4_A           11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDV   89 (355)
T ss_dssp             --------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETT
T ss_pred             CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECC
Confidence            3556789999999999999999999998775 78999998877766555556677777887777 567888999999998


Q ss_pred             cCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCC-cEEEEeeeccCEEEEeeCCCEEEE
Q 009993          213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALL-KCLKVLRHSDWVYGLAPHDTTVAS  291 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~l~~  291 (520)
                      ++.             ....+ .|...|.++.++++.++++. |+.|++||+.++ +.+..+.....+.++++  .+++.
T Consensus        90 ~~~-------------~~~~~-~~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~  152 (355)
T 3vu4_A           90 KKQ-------------DVSRI-KVDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVY  152 (355)
T ss_dssp             TTE-------------EEEEE-ECSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEE
T ss_pred             CCc-------------EEEEE-ECCCceEEEEEcCCEEEEEE-cCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEE
Confidence            763             23333 36779999999888877765 789999999988 66666655444555556  66666


Q ss_pred             E--c-CCeEEEEECCCCe---------------e-eEEeecccccceEEEEecCCCCEEEEEeCCCe-EEEEEcccCccc
Q 009993          292 T--S-GSDVYIWDTNSGC---------------L-LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA-IHMYEIINDCTE  351 (520)
Q Consensus       292 ~--~-d~~i~iwd~~~~~---------------~-~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~-i~iwd~~~~~~~  351 (520)
                      +  + +|.|++||++++.               + +..+. +|...|++++|+|+|.+|++|+.||+ |++||++++   
T Consensus       153 ~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~-~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~---  228 (355)
T 3vu4_A          153 SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK-AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG---  228 (355)
T ss_dssp             EESSCTTCEEEEECCC------------------CCEEEC-CCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC---
T ss_pred             eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE-ccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC---
Confidence            4  5 8999999999865               1 55565 79999999999999999999999998 999999998   


Q ss_pred             cceeeeeeec-C-CcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceee-ee-ecC-CCcccc---cC
Q 009993          352 ANVLLVATWI-P-HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSR-VI-EVE-PPQRML---HG  421 (520)
Q Consensus       352 ~~~~~~~~~~-~-h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~-~~~-~~~~~~---~~  421 (520)
                         .++..+. + |...|++++|+|  .+|++++.|++|++||++................ .. ... .....+   ..
T Consensus       229 ---~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (355)
T 3vu4_A          229 ---VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKH  305 (355)
T ss_dssp             ---CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTT
T ss_pred             ---cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCC
Confidence               6777787 5 999999999976  6999999999999999986532111000000000 00 000 000000   11


Q ss_pred             cceeeEEEEecCCEEEEecCCCeEEEEeCCchHh
Q 009993          422 FECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE  455 (520)
Q Consensus       422 ~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~  455 (520)
                      ....+.++.++++.|++++.||.+++|++..+..
T Consensus       306 ~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~  339 (355)
T 3vu4_A          306 VRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE  339 (355)
T ss_dssp             CCCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred             CCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence            1225567777777999999999999999986643

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-33  Score=301.39  Aligned_cols=232  Identities=11%  Similarity=0.101  Sum_probs=168.8

Q ss_pred             hhhhhcCCCCCCCC-CCCCCCCcccHHHhh---hhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC
Q 009993          107 FYCERWGLPIASAP-LGAGFSDDKSWKELI---DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP  182 (520)
Q Consensus       107 ~~~~~~~~~~~~~~-~~~~~~~~~~W~~~~---~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~  182 (520)
                      +.|..|. |+..++ .++.+...++|+...   .....|...|.+++|+| |++|++++.|++|++||+.+++.+..+. 
T Consensus        20 V~~lafs-pdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-   96 (902)
T 2oaj_A           20 PIAAAFD-FTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-   96 (902)
T ss_dssp             EEEEEEE-TTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-
T ss_pred             cEEEEEC-CCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-
Confidence            4566666 444332 233345568897221   11235889999999999 8899999999999999999999888886 


Q ss_pred             CCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC---CEEEEEecCC
Q 009993          183 LGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL---TRIYSGSWDM  257 (520)
Q Consensus       183 ~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg  257 (520)
                      |...|.++.  |++++|++|+.||.|++||+.++....+.....  ......+.+|.+.|.+++|++   ..+++|+.||
T Consensus        97 ~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~--~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg  174 (902)
T 2oaj_A           97 VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNL--QKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYV  174 (902)
T ss_dssp             CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCH--HHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSC
T ss_pred             CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccc--cccccccccCCCCeEEEEEccCCCCEEEEEeCCC
Confidence            555676665  899999999999999999998764321111000  000023467999999999954   5799999999


Q ss_pred             eEEEEECCCCcEEEEee-e------------------ccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEE--ee-
Q 009993          258 TVRVWDRALLKCLKVLR-H------------------SDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTV--VN-  312 (520)
Q Consensus       258 ~v~iwd~~~~~~~~~~~-~------------------~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~--~~-  312 (520)
                      +| +||+++++++..+. |                  ...|.++.  |++.+|++++ |+.|++||+++++++..  +. 
T Consensus       175 ~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~  253 (902)
T 2oaj_A          175 TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFE  253 (902)
T ss_dssp             EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSC
T ss_pred             cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecc
Confidence            99 99999999888776 3                  36798887  8899999999 99999999999887653  21 


Q ss_pred             -cc-------------cccceEEEEec----CCC-CEEEEEeCC-----CeEEEEE
Q 009993          313 -GA-------------HVGNTKSLARS----HTG-DFLFTGGED-----GAIHMYE  344 (520)
Q Consensus       313 -~~-------------~~~~i~~l~~s----~~~-~~l~tg~~d-----g~i~iwd  344 (520)
                       ..             |...|++++|+    |++ .+|++|+.|     +.+.+|+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~  309 (902)
T 2oaj_A          254 TEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMID  309 (902)
T ss_dssp             SCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEE
T ss_pred             cccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEe
Confidence             01             34578999995    443 456666554     2566666

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=9.8e-33  Score=267.59  Aligned_cols=283  Identities=14%  Similarity=0.219  Sum_probs=225.9

Q ss_pred             hhhhhccccccEEEEEEccC---CCEEEEEeCCCeEEEEECCC-CcEE-EEeCCCCceEEEEe--cCCCEEEEEeCCCcE
Q 009993          134 LIDVLYGHTEAVLTVFVLAS---AKLLFTSGYDSIVRMWHLED-GFSI-ASSKPLGCTIRAVA--ADKKLLVAGGTDGFI  206 (520)
Q Consensus       134 ~~~~l~~h~~~V~~l~~~~~---~~~l~sgs~dg~v~vwd~~~-~~~~-~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i  206 (520)
                      .+..+.+|.+.|++++|+|+   |++|++|+.||.|++||+.+ +..+ ..+.+|...|.++.  +++++|++|+.||.|
T Consensus        31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v  110 (368)
T 3mmy_A           31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTA  110 (368)
T ss_dssp             CEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             eeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcE
Confidence            46678999999999999999   69999999999999999997 5555 67788888888766  899999999999999


Q ss_pred             EEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE----cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEE
Q 009993          207 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGL  282 (520)
Q Consensus       207 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~  282 (520)
                      ++||+.++.              ...+.+|...|.+++|    ++.++++++.||.|++||+++++.+..+.....+.++
T Consensus       111 ~iwd~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  176 (368)
T 3mmy_A          111 KMWDLSSNQ--------------AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCA  176 (368)
T ss_dssp             EEEETTTTE--------------EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEE
T ss_pred             EEEEcCCCC--------------ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEE
Confidence            999998762              3345679999999999    4467999999999999999999999999877788888


Q ss_pred             eeCCCEEEEEc-CCeEEEEECCCCeeeEE-eecccccceEEEEecCCCCE----EEEEeCCCeEEEEEcccCccccceee
Q 009993          283 APHDTTVASTS-GSDVYIWDTNSGCLLTV-VNGAHVGNTKSLARSHTGDF----LFTGGEDGAIHMYEIINDCTEANVLL  356 (520)
Q Consensus       283 ~~~~~~l~~~~-d~~i~iwd~~~~~~~~~-~~~~~~~~i~~l~~s~~~~~----l~tg~~dg~i~iwd~~~~~~~~~~~~  356 (520)
                      .+.+..++++. ++.+++||++....... ....+...+.++++.++...    +++|+.||.|++||++.....   ..
T Consensus       177 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~---~~  253 (368)
T 3mmy_A          177 DVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA---KD  253 (368)
T ss_dssp             EEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH---HH
T ss_pred             EecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc---cc
Confidence            86666777766 99999999988654333 33334555666666655544    999999999999999876321   23


Q ss_pred             eeeecCCcC------------CEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCc
Q 009993          357 VATWIPHTG------------PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF  422 (520)
Q Consensus       357 ~~~~~~h~~------------~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (520)
                      +..+.+|..            +|++++|+|  ++|++|+.||.|++||+.++.                   ....+.+|
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~-------------------~~~~~~~~  314 (368)
T 3mmy_A          254 NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART-------------------KLKTSEQL  314 (368)
T ss_dssp             SEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE-------------------EEEECCCC
T ss_pred             ceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc-------------------EEEEecCC
Confidence            455666665            799999976  599999999999999998742                   23345567


Q ss_pred             ceeeEEEEec--CCEEEEecCCCeEEEEeCCc
Q 009993          423 ECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQ  452 (520)
Q Consensus       423 ~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~~  452 (520)
                      ...+.++.++  +.+|++|+.|+..+.|++-+
T Consensus       315 ~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~  346 (368)
T 3mmy_A          315 DQPISACCFNHNGNIFAYASSYDWSKGHEFYN  346 (368)
T ss_dssp             SSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred             CCCceEEEECCCCCeEEEEecccccccccccC
Confidence            7777777665  45999999998766666543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=8.9e-32  Score=255.57  Aligned_cols=267  Identities=19%  Similarity=0.254  Sum_probs=214.2

Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC--CCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeee
Q 009993          145 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK--PLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFD  220 (520)
Q Consensus       145 V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~--~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  220 (520)
                      +.+|+|++++ +|++| .|++|+|||+.+++.+..+.  +|...|.++.  +++++|++|+.||+|++||+.++.     
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-----  100 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----  100 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-----
Confidence            4678999875 67766 49999999999999887664  6776777665  899999999999999999998763     


Q ss_pred             ccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCc-EEEEee-eccCEEEEe--eCCCEEEEEc-CC
Q 009993          221 ISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLK-CLKVLR-HSDWVYGLA--PHDTTVASTS-GS  295 (520)
Q Consensus       221 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~  295 (520)
                              ....+.+|...+.++.+++..+++++.++.+++|+..... .+..+. |...+..+.  ++++++++++ |+
T Consensus       101 --------~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  172 (318)
T 4ggc_A          101 --------RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN  172 (318)
T ss_dssp             --------EEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             --------eEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCc
Confidence                    5567789999999999999999999999999999988764 344444 788888776  7889999998 99


Q ss_pred             eEEEEECCCCeee----EEeecccccceEEEEecCCCCE---EEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEE
Q 009993          296 DVYIWDTNSGCLL----TVVNGAHVGNTKSLARSHTGDF---LFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN  368 (520)
Q Consensus       296 ~i~iwd~~~~~~~----~~~~~~~~~~i~~l~~s~~~~~---l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~  368 (520)
                      .|++||+++++..    ... ..+.+.|.++.++|++..   +++++.++.|++||....      .... ...+...+.
T Consensus       173 ~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~------~~~~-~~~~~~~v~  244 (318)
T 4ggc_A          173 LVNVWPSAPGEGGWVPLQTF-TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG------ACLS-AVDAHSQVC  244 (318)
T ss_dssp             CEEEEESSCBTTBSCCSEEE-CCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC------CEEE-EEECSSCEE
T ss_pred             ceeEEECCCCcccccceeee-cccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc------cccc-cccceeeee
Confidence            9999999887532    222 357889999999997653   346778999999999887      3333 335667889


Q ss_pred             EEEecC--CEEEEE--eCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC--CEEEEecCC
Q 009993          369 SLAFEF--PWLVSA--AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEE  442 (520)
Q Consensus       369 ~l~~~~--~~l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~D  442 (520)
                      .+.|.+  ..++++  +.|+.|++||++++                   .+...+.+|...|.++.+++  .+|+|||.|
T Consensus       245 ~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~-------------------~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D  305 (318)
T 4ggc_A          245 SILWSPHYKELISGHGFAQNQLVIWKYPTM-------------------AKVAELKGHTSRVLSLTMSPDGATVASAAAD  305 (318)
T ss_dssp             EEEEETTTTEEEEEECTTTCCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             eeeecccccceEEEEEcCCCEEEEEECCCC-------------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecC
Confidence            999965  555554  47999999999873                   34455778998898888764  499999999


Q ss_pred             CeEEEEeCCch
Q 009993          443 GIVRIWNFSQA  453 (520)
Q Consensus       443 g~v~iwd~~~~  453 (520)
                      |+|+|||+.+.
T Consensus       306 ~~v~iWd~~~~  316 (318)
T 4ggc_A          306 ETLRLWRCFEL  316 (318)
T ss_dssp             TEEEEECCSCC
T ss_pred             CeEEEEECCCC
Confidence            99999998753

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.7e-32  Score=255.69  Aligned_cols=245  Identities=18%  Similarity=0.219  Sum_probs=193.7

Q ss_pred             EEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc----CCEEE
Q 009993          178 ASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD----LTRIY  251 (520)
Q Consensus       178 ~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~  251 (520)
                      ..+.+|...|.++.  +++++|++|+.|++|++||+.+..           ......+.+|.++|.+++|.    +++|+
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-----------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~   71 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-----------HKLIDTLTGHEGPVWRVDWAHPKFGTILA   71 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-----------BCCCEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-----------cEEEEEEccccCCeEEEEecCCCcCCEEE
Confidence            45678888887665  899999999999999999986431           23556788999999999992    68999


Q ss_pred             EEecCCeEEEEECCCCc--EEEEee-eccCEEEEe--eC--CCEEEEEc-CCeEEEEECCCCee--eEEeecccccceEE
Q 009993          252 SGSWDMTVRVWDRALLK--CLKVLR-HSDWVYGLA--PH--DTTVASTS-GSDVYIWDTNSGCL--LTVVNGAHVGNTKS  321 (520)
Q Consensus       252 s~s~dg~v~iwd~~~~~--~~~~~~-~~~~v~~~~--~~--~~~l~~~~-d~~i~iwd~~~~~~--~~~~~~~~~~~i~~  321 (520)
                      +|+.|++|++||+++++  .+..+. |...|.++.  |+  +.++++++ |+.|++||++++..  ...+. +|...|.+
T Consensus        72 s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~-~h~~~v~~  150 (297)
T 2pm7_B           72 SCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNS  150 (297)
T ss_dssp             EEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE-CCSSCEEE
T ss_pred             EEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee-cccCccce
Confidence            99999999999998874  444454 888999988  54  78899988 99999999987632  33343 69999999


Q ss_pred             EEecCC-------------CCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-----CEEEEEeCC
Q 009993          322 LARSHT-------------GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-----PWLVSAAGD  383 (520)
Q Consensus       322 l~~s~~-------------~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~l~s~s~d  383 (520)
                      ++|+|+             +++|++|+.|++|++||++++..  .......+.+|...|++++|+|     .+|++++.|
T Consensus       151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~--~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D  228 (297)
T 2pm7_B          151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ--TYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD  228 (297)
T ss_dssp             EEECCCC------------CCEEEEEETTSCEEEEEEETTTT--EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred             EeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc--eEEEEEEecCCCCceEEEEECCCCCCceEEEEEECC
Confidence            999997             57999999999999999987631  1125667889999999999987     489999999


Q ss_pred             CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc--cCcceeeEEEEe--cCCEEEEecCCCeEEEEeCCc
Q 009993          384 GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML--HGFECNLLSVDI--GADRIVCGGEEGIVRIWNFSQ  452 (520)
Q Consensus       384 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~--~~~~l~sg~~Dg~v~iwd~~~  452 (520)
                      ++|++||+++.....                ....+  .+|...+.++++  ++++|++++.||.|++|+...
T Consensus       229 ~~v~iWd~~~~~~~~----------------~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          229 RTCIIWTQDNEQGPW----------------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             SCEEEEEESSTTSCC----------------EEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             CcEEEEEeCCCCCcc----------------ceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            999999987631100                00111  345556666655  556999999999999999763

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.7e-32  Score=268.94  Aligned_cols=250  Identities=21%  Similarity=0.273  Sum_probs=216.1

Q ss_pred             CCCcccHH----Hhhhh--hccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEE
Q 009993          125 FSDDKSWK----ELIDV--LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLV  198 (520)
Q Consensus       125 ~~~~~~W~----~~~~~--l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~  198 (520)
                      +...++|+    ++.+.  +.+|.+.|++|+|+|+|++|++|+.||+|+|||+.+++.+..+.+|...+.+++.++..++
T Consensus       124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~  203 (420)
T 4gga_A          124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILS  203 (420)
T ss_dssp             TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEE
T ss_pred             CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEE
Confidence            55668998    33343  4578899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcE----EEE
Q 009993          199 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKC----LKV  272 (520)
Q Consensus       199 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~----~~~  272 (520)
                      +|+.|+.+++||.....            .....+.+|...+..+.+  ++.++++++.|+.+++||..+++.    +..
T Consensus       204 sgs~d~~i~~~d~~~~~------------~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~  271 (420)
T 4gga_A          204 SGSRSGHIHHHDVRVAE------------HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT  271 (420)
T ss_dssp             EEETTSEEEEEETTSSS------------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEE
T ss_pred             EEeCCCceeEeeecccc------------eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeee
Confidence            99999999999987652            345677899999999999  779999999999999999987653    233


Q ss_pred             e-eeccCEEEEe--e-CCCEEEEE--c-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEe--CCCeEEEE
Q 009993          273 L-RHSDWVYGLA--P-HDTTVAST--S-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG--EDGAIHMY  343 (520)
Q Consensus       273 ~-~~~~~v~~~~--~-~~~~l~~~--~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~--~dg~i~iw  343 (520)
                      . .|...|.++.  + ++.+++++  + |+.|++||+.+++....+.  +...+.++.|+|+++.+++++  .|+.|+||
T Consensus       272 ~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~--~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iw  349 (420)
T 4gga_A          272 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHGFAQNQLVIW  349 (420)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEEEE
T ss_pred             ecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec--cccceeeeeecCCCCeEEEEEecCCCEEEEE
Confidence            3 3888898887  3 45566553  4 8999999999999998886  556799999999999888765  79999999


Q ss_pred             EcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993          344 EIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       344 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  394 (520)
                      |+.++      .++.++.+|.+.|++++|+|  .+|+||+.|++|+|||+...
T Consensus       350 d~~~~------~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~  396 (420)
T 4gga_A          350 KYPTM------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  396 (420)
T ss_dssp             ETTTC------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred             ECCCC------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            99998      78899999999999999976  69999999999999999764

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.5e-32  Score=261.98  Aligned_cols=279  Identities=18%  Similarity=0.255  Sum_probs=221.9

Q ss_pred             hcCcchhhhhhhhhcCCCCCCCCCC--CCCCCcccHH---------HhhhhhccccccEEEEEEccCCCEEEEEeCCCeE
Q 009993           98 ASDHHAWKEFYCERWGLPIASAPLG--AGFSDDKSWK---------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIV  166 (520)
Q Consensus        98 ~~~~~lW~~~~~~~~~~~~~~~~~~--~~~~~~~~W~---------~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v  166 (520)
                      +..|.  ..+.|..|. |.....+.  +.+...++|+         ...+++++|.+.|++++|+|++++|++|+.|+.|
T Consensus        34 L~GH~--~~V~~v~~s-p~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i  110 (340)
T 4aow_A           34 LKGHN--GWVTQIATT-PQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL  110 (340)
T ss_dssp             ECCCS--SCEEEEEEC-TTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             ECCcc--CCEEEEEEe-CCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence            44555  446788887 55333333  4455679998         2366789999999999999999999999999999


Q ss_pred             EEEECCCCcEEEEeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEE
Q 009993          167 RMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA  244 (520)
Q Consensus       167 ~vwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  244 (520)
                      ++|+............+...+...  .+++..|++|+.|+.+++||.....            .......+|...|..++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~------------~~~~~~~~~~~~v~~~~  178 (340)
T 4aow_A          111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC------------KYTVQDESHSEWVSCVR  178 (340)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE------------EEEECSSSCSSCEEEEE
T ss_pred             eEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc------------eEEEEeccccCcccceE
Confidence            999999988877776665555444  4889999999999999999986542            23344567999999999


Q ss_pred             E--c--CCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccc
Q 009993          245 L--D--LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHV  316 (520)
Q Consensus       245 ~--~--~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~  316 (520)
                      +  +  ...+++++.|++|++||+++++.+..+. |...|.++.  |++++|++++ |+.|++||+++++.+..+.  +.
T Consensus       179 ~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~~  256 (340)
T 4aow_A          179 FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD--GG  256 (340)
T ss_dssp             ECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--CS
T ss_pred             EccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec--CC
Confidence            9  2  3578999999999999999999988887 899999887  8899999999 9999999999999998886  56


Q ss_pred             cceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccce---eeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeC
Q 009993          317 GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV---LLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDV  391 (520)
Q Consensus       317 ~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~---~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~  391 (520)
                      ..+.+++|+|++.++ +++.|+.|++||+++.......   .......+|...|++++|+|  ++|++|+.||.|+|||+
T Consensus       257 ~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~  335 (340)
T 4aow_A          257 DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV  335 (340)
T ss_dssp             SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence            789999999987655 5667999999999877321111   11223457899999999976  69999999999999999


Q ss_pred             Ccc
Q 009993          392 RKL  394 (520)
Q Consensus       392 ~~~  394 (520)
                      .++
T Consensus       336 ~tG  338 (340)
T 4aow_A          336 TIG  338 (340)
T ss_dssp             EC-
T ss_pred             CCc
Confidence            875

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.1e-32  Score=264.98  Aligned_cols=290  Identities=16%  Similarity=0.175  Sum_probs=206.4

Q ss_pred             hhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC----cEEEEeCCCCceEEEEe--c--CCCEEEEEeCCCcEE
Q 009993          136 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG----FSIASSKPLGCTIRAVA--A--DKKLLVAGGTDGFIH  207 (520)
Q Consensus       136 ~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~----~~~~~~~~~~~~v~~~~--~--~~~~l~sg~~dg~i~  207 (520)
                      +.+.+|.+.|++++|+|++++|++|+.||.|++||+.++    +....+.+|...|.++.  +  ++.+|++|+.||.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            457899999999999999999999999999999999876    46677789999998877  5  589999999999999


Q ss_pred             EEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--c--CCEEEEEecCCeEEEEECCCCcEEEEee---------
Q 009993          208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D--LTRIYSGSWDMTVRVWDRALLKCLKVLR---------  274 (520)
Q Consensus       208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~--~~~l~s~s~dg~v~iwd~~~~~~~~~~~---------  274 (520)
                      +||+.++....    ..........+.+|...|.+++|  +  +.++++++.||.|++||+++++.+..+.         
T Consensus        85 vwd~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  160 (351)
T 3f3f_A           85 LWEEDPDQEEC----SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS  160 (351)
T ss_dssp             EEEECTTSCTT----SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred             EEecCCCcccc----cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence            99998763210    00111346677899999999999  4  7899999999999999998876543322         


Q ss_pred             -----eccCEEEEe--eC---CCEEEEEc-CCeEEEEECCCCee--eEEeecccccceEEEEecCCC----CEEEEEeCC
Q 009993          275 -----HSDWVYGLA--PH---DTTVASTS-GSDVYIWDTNSGCL--LTVVNGAHVGNTKSLARSHTG----DFLFTGGED  337 (520)
Q Consensus       275 -----~~~~v~~~~--~~---~~~l~~~~-d~~i~iwd~~~~~~--~~~~~~~~~~~i~~l~~s~~~----~~l~tg~~d  337 (520)
                           +...+.++.  |+   +..+++++ ++.+.+|+...+..  +..+. +|...|++++|+|++    .+|++|+.|
T Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~p~~~~~~~~l~s~~~d  239 (351)
T 3f3f_A          161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP-GHKSLIRSISWAPSIGRWYQLIATGCKD  239 (351)
T ss_dssp             CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC-CCCSCEEEEEECCCSSCSSEEEEEEETT
T ss_pred             cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC-CCCcceeEEEECCCCCCcceEEEEEcCC
Confidence                 455677776  54   88888888 88898888877764  44554 699999999999998    899999999


Q ss_pred             CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEE----EEeCCCcEEEEeCCcccccCCCCCCCceeeeee
Q 009993          338 GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLV----SAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE  411 (520)
Q Consensus       338 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~----s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  411 (520)
                      |.|++||++.+.      .......+...+......+  ..+.    .+.....+.+|+...                  
T Consensus       240 g~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  295 (351)
T 3f3f_A          240 GRIRIFKITEKL------SPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ------------------  295 (351)
T ss_dssp             SCEEEEEEEECC---------------------------------------------CCSEE------------------
T ss_pred             CeEEEEeCCCCc------CccccCCcccceeccCCCcccccccccccccccceeeeeccccc------------------
Confidence            999999998873      2222222222222222222  2222    223344445554433                  


Q ss_pred             cCCCcccccCcceeeEEEEecC--CEEEEecCCCeEEEEeCCchHh
Q 009993          412 VEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQAFE  455 (520)
Q Consensus       412 ~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~v~iwd~~~~~~  455 (520)
                       ......+.+|...|.++.+++  .+|++|+.||.|++|++.++..
T Consensus       296 -~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          296 -VELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE  340 (351)
T ss_dssp             -EEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred             -ccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence             223344567877888777764  5999999999999999997643

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-32  Score=264.86  Aligned_cols=247  Identities=16%  Similarity=0.151  Sum_probs=206.2

Q ss_pred             hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECC--CCcEEEEeCCCCceEEEEe--cC--CCEEEEEeCCCcEE
Q 009993          134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLE--DGFSIASSKPLGCTIRAVA--AD--KKLLVAGGTDGFIH  207 (520)
Q Consensus       134 ~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~~~v~~~~--~~--~~~l~sg~~dg~i~  207 (520)
                      ++.++.+|.+.|++++|+|++++|++|+.||.|++||+.  +++.+..+.+|...|.++.  ++  +.+|++|+.||.|+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~   82 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   82 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence            467889999999999999999999999999999999998  5677788999999998876  44  89999999999999


Q ss_pred             EEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--c--CCEEEEEecCCeEEEEECCCCcEEE--Ee-eeccCEE
Q 009993          208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D--LTRIYSGSWDMTVRVWDRALLKCLK--VL-RHSDWVY  280 (520)
Q Consensus       208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~--~~~l~s~s~dg~v~iwd~~~~~~~~--~~-~~~~~v~  280 (520)
                      +||+.++.           ......+.+|...|.+++|  +  +.++++++.|+.|++||++++....  .+ .|...|.
T Consensus        83 iwd~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~  151 (379)
T 3jrp_A           83 IWKEENGR-----------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN  151 (379)
T ss_dssp             EEEEETTE-----------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEE
T ss_pred             EEEcCCCc-----------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceE
Confidence            99998753           2245667789999999999  4  7899999999999999999874322  23 3888999


Q ss_pred             EEe--e-------------CCCEEEEEc-CCeEEEEECCCCe----eeEEeecccccceEEEEecCC---CCEEEEEeCC
Q 009993          281 GLA--P-------------HDTTVASTS-GSDVYIWDTNSGC----LLTVVNGAHVGNTKSLARSHT---GDFLFTGGED  337 (520)
Q Consensus       281 ~~~--~-------------~~~~l~~~~-d~~i~iwd~~~~~----~~~~~~~~~~~~i~~l~~s~~---~~~l~tg~~d  337 (520)
                      ++.  +             ++.++++++ |+.|++||++++.    ....+. +|...|.+++|+|+   +.+|++++.|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~l~s~~~d  230 (379)
T 3jrp_A          152 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASVSQD  230 (379)
T ss_dssp             EEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred             EEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe-cccCcEeEEEECCCCCCCCeEEEEeCC
Confidence            988  5             588999988 9999999998764    334444 69999999999999   8999999999


Q ss_pred             CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993          338 GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       338 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  393 (520)
                      |.|++||++++..... ........|...|++++|+|  .+|++++.||.|++|++..
T Consensus       231 g~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          231 RTCIIWTQDNEQGPWK-KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             SCEEEEEESSTTSCCE-EEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             CEEEEEeCCCCCccce-eeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            9999999988632111 23333455889999999976  6999999999999999985

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.1e-32  Score=267.81  Aligned_cols=256  Identities=18%  Similarity=0.174  Sum_probs=219.4

Q ss_pred             CCCCCCcccHH----Hhhhhhcc-ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCE
Q 009993          122 GAGFSDDKSWK----ELIDVLYG-HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKL  196 (520)
Q Consensus       122 ~~~~~~~~~W~----~~~~~l~~-h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  196 (520)
                      .+.+...++|+    +....+.. |.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.++..+++.
T Consensus       109 ~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  188 (401)
T 4aez_A          109 VALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHV  188 (401)
T ss_dssp             EEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTE
T ss_pred             EECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCE
Confidence            34455568887    23334444 89999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee
Q 009993          197 LVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR  274 (520)
Q Consensus       197 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  274 (520)
                      +++|+.||.|++||+....            .....+.+|.+.|.+++|  ++.+|++|+.||.|++||+++++.+..+.
T Consensus       189 l~~~~~dg~i~i~d~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  256 (401)
T 4aez_A          189 LSSGSRSGAIHHHDVRIAN------------HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT  256 (401)
T ss_dssp             EEEEETTSEEEEEETTSSS------------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC
T ss_pred             EEEEcCCCCEEEEecccCc------------ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec
Confidence            9999999999999997542            345677889999999999  67899999999999999999999888886


Q ss_pred             -eccCEEEEe--eC-CCEEEEEc---CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEE--EeCCCeEEEEEc
Q 009993          275 -HSDWVYGLA--PH-DTTVASTS---GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT--GGEDGAIHMYEI  345 (520)
Q Consensus       275 -~~~~v~~~~--~~-~~~l~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~t--g~~dg~i~iwd~  345 (520)
                       |...|.++.  ++ ..++++++   |+.|++||+.+++.+..+.  +...+.+++|+|++.++++  |+.||.|++||+
T Consensus       257 ~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~  334 (401)
T 4aez_A          257 NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY  334 (401)
T ss_dssp             CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEE
T ss_pred             CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEec
Confidence             888898887  54 45677654   8999999999999998885  6788999999999999999  448999999999


Q ss_pred             ccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCccc
Q 009993          346 INDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLL  395 (520)
Q Consensus       346 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~  395 (520)
                      .++..    .....+.+|...|.+++|+|  .+|++++.||.|++||+.++.
T Consensus       335 ~~~~~----~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~  382 (401)
T 4aez_A          335 SSSGL----TKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD  382 (401)
T ss_dssp             ETTEE----EEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred             CCccc----eeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            88632    34555779999999999976  699999999999999998753

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=6.4e-32  Score=256.55  Aligned_cols=251  Identities=21%  Similarity=0.239  Sum_probs=213.2

Q ss_pred             CCCCCcccHH----Hhhhhh--ccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCE
Q 009993          123 AGFSDDKSWK----ELIDVL--YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKL  196 (520)
Q Consensus       123 ~~~~~~~~W~----~~~~~l--~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  196 (520)
                      +.+...++|+    ++++++  .+|...|++++|+|++++|++|+.||+|++||+++++.+..+.+|...+.++++++..
T Consensus        42 g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~  121 (318)
T 4ggc_A           42 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYI  121 (318)
T ss_dssp             EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTE
T ss_pred             EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCE
Confidence            3455678998    334444  5788899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEE---
Q 009993          197 LVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLK---  271 (520)
Q Consensus       197 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~---  271 (520)
                      +++|+.++.+++|+.....            .....+.+|...+..+.+  +++++++++.|++|++||+++++...   
T Consensus       122 l~s~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  189 (318)
T 4ggc_A          122 LSSGSRSGHIHHHDVRVAE------------HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL  189 (318)
T ss_dssp             EEEEETTSEEEEEETTSSS------------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS
T ss_pred             EEEEecCCceEeeecCCCc------------eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce
Confidence            9999999999999987652            355677899999999999  77899999999999999998875332   


Q ss_pred             --EeeeccCEEEEe--eC-CCEEE--EEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEe--CCCeEE
Q 009993          272 --VLRHSDWVYGLA--PH-DTTVA--STS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG--EDGAIH  341 (520)
Q Consensus       272 --~~~~~~~v~~~~--~~-~~~l~--~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~--~dg~i~  341 (520)
                        ...+...|.++.  +. +..+.  +++ ++.|++||...........  +...+..+.|+|++..+++++  .|+.|+
T Consensus       190 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~sg~~d~~i~  267 (318)
T 4ggc_A          190 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHGFAQNQLV  267 (318)
T ss_dssp             EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEE
T ss_pred             eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc--ceeeeeeeeecccccceEEEEEcCCCEEE
Confidence              222677788776  33 44443  344 6899999999988877664  778899999999999887654  799999


Q ss_pred             EEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993          342 MYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       342 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  393 (520)
                      +||++++      .++.++.+|.+.|++++|+|  .+|+||+.||+|+|||+..
T Consensus       268 iwd~~~~------~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          268 IWKYPTM------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             EEETTTC------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             EEECCCC------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            9999998      78889999999999999976  6999999999999999975

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=7.7e-32  Score=268.91  Aligned_cols=247  Identities=14%  Similarity=0.194  Sum_probs=193.0

Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc-----------EEEEeCCCC------------ceEEEEe--cCC
Q 009993          140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF-----------SIASSKPLG------------CTIRAVA--ADK  194 (520)
Q Consensus       140 ~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~-----------~~~~~~~~~------------~~v~~~~--~~~  194 (520)
                      .|.+.|++++|+|+|++|++|+.||.|+|||+.++.           ....+.+|.            ..|.++.  +++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            478999999999999999999999999999999877           477888897            5565554  777


Q ss_pred             --CEEEEEeCCCcEEEEEcccCcceee--eccCCc------------------------cccceEE-eccCCCCeEEEEE
Q 009993          195 --KLLVAGGTDGFIHCWRAVEVLPHLF--DISGSE------------------------KQNTQFR-LWEHEGPITSLAL  245 (520)
Q Consensus       195 --~~l~sg~~dg~i~vwd~~~~~~~~~--~~~~~~------------------------~~~~~~~-~~~h~~~v~~l~~  245 (520)
                        ..|++++.||.|++||+.++.....  ......                        ....... ..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              7999999999999999976432110  000000                        0001112 3689999999999


Q ss_pred             --cCCEEEEEecCCeEEEEECCC-CcEEEEe--------eeccCEEEEe--eCC-CEEEEEc-CCeEEEEECCCCee---
Q 009993          246 --DLTRIYSGSWDMTVRVWDRAL-LKCLKVL--------RHSDWVYGLA--PHD-TTVASTS-GSDVYIWDTNSGCL---  307 (520)
Q Consensus       246 --~~~~l~s~s~dg~v~iwd~~~-~~~~~~~--------~~~~~v~~~~--~~~-~~l~~~~-d~~i~iwd~~~~~~---  307 (520)
                        ++++|++| .|++|++||+++ ++.+..+        .|...|.++.  |++ .++++++ |+.|++||+++++.   
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence              77899998 799999999994 4555533        3788899988  776 8999998 99999999999886   


Q ss_pred             -eEEeeccccc------------ceEEEEecCCCCEEEEEeCCCeEEEEEccc-CccccceeeeeeecCCcCC-------
Q 009993          308 -LTVVNGAHVG------------NTKSLARSHTGDFLFTGGEDGAIHMYEIIN-DCTEANVLLVATWIPHTGP-------  366 (520)
Q Consensus       308 -~~~~~~~~~~------------~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~h~~~-------  366 (520)
                       +..+. +|..            .|.+++|+|++.+|++++. +.|++||++. +      .++..+.+|...       
T Consensus       265 ~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~------~~~~~~~~~~~~~~~l~~~  336 (447)
T 3dw8_B          265 HSKLFE-EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN------RPVETYQVHEYLRSKLCSL  336 (447)
T ss_dssp             TCEEEC-CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS------SCSCCEESCGGGTTTHHHH
T ss_pred             eeeEec-cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc------cccceeecccccccccccc
Confidence             56665 4654            8999999999999999999 9999999987 5      566777777542       


Q ss_pred             --------EEEEEecC--CEEEEEeCCCcEEEEeCCccc
Q 009993          367 --------VNSLAFEF--PWLVSAAGDGKLSLIDVRKLL  395 (520)
Q Consensus       367 --------v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~  395 (520)
                              +..++|+|  .+|++|+.||.|++||+.++.
T Consensus       337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~  375 (447)
T 3dw8_B          337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR  375 (447)
T ss_dssp             HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred             ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence                    33488876  699999999999999998754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-32  Score=270.45  Aligned_cols=288  Identities=14%  Similarity=0.211  Sum_probs=215.8

Q ss_pred             EccCCCEEEEEeCCCeEEEEECCCCcEEEEe-CCCCceEEEEe--c-CCCEEEEEeCCCcEEEEEcccCcceeeeccCCc
Q 009993          150 VLASAKLLFTSGYDSIVRMWHLEDGFSIASS-KPLGCTIRAVA--A-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE  225 (520)
Q Consensus       150 ~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~--~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~  225 (520)
                      |+|++..+++++      .|+ .+++.+..+ .+|...|.++.  + ++.+|++|+.||+|++||+.+....       .
T Consensus        35 f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~-------~  100 (437)
T 3gre_A           35 FGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG-------E  100 (437)
T ss_dssp             GCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT-------C
T ss_pred             cCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC-------c
Confidence            678888887765      388 567888888 88988888776  7 8999999999999999998762100       0


Q ss_pred             cccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECC---CCcEEEEee-------------eccCEEEEe----
Q 009993          226 KQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRA---LLKCLKVLR-------------HSDWVYGLA----  283 (520)
Q Consensus       226 ~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~---~~~~~~~~~-------------~~~~v~~~~----  283 (520)
                      .......+ +|...|.+++|  ++++|++|+.||+|++||+.   +++......             +...+.++.    
T Consensus       101 ~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  179 (437)
T 3gre_A          101 VYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVN  179 (437)
T ss_dssp             CCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEEC
T ss_pred             ccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEc
Confidence            01122222 59999999999  67899999999999999995   555544333             234455554    


Q ss_pred             eCCCEEEEEc-CCeEEEEECCCCeeeEEeecc-cccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec
Q 009993          284 PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGA-HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI  361 (520)
Q Consensus       284 ~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~-~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~  361 (520)
                      +++.++++++ |+.|++||+++++.+..+... |...|++++|+|++.+|++|+.||.|++||++++      .++..+.
T Consensus       180 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~  253 (437)
T 3gre_A          180 EEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN------VLIRSWS  253 (437)
T ss_dssp             SSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT------EEEEEEB
T ss_pred             CCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc------cEEEEEe
Confidence            5688999998 999999999999999888743 8899999999999999999999999999999988      6777765


Q ss_pred             -CCcCCEEEEEecC------CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCC-----cccccC--cceeeE
Q 009993          362 -PHTGPVNSLAFEF------PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPP-----QRMLHG--FECNLL  427 (520)
Q Consensus       362 -~h~~~v~~l~~~~------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~v~  427 (520)
                       +|..+|++++|+|      .+|++|+.||.|++||++++........+..........+.     ...+.+  |...|.
T Consensus       254 ~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~  333 (437)
T 3gre_A          254 FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALS  333 (437)
T ss_dssp             CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGC
T ss_pred             cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceE
Confidence             7888999998765      38999999999999999876433221111100000000000     001233  666677


Q ss_pred             EEEecCC-EEEEecCCCeEEEEeCCchHhHHH
Q 009993          428 SVDIGAD-RIVCGGEEGIVRIWNFSQAFEIER  458 (520)
Q Consensus       428 ~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~~~~  458 (520)
                      ++.+++. +|++|+.||.|++||+.++..+..
T Consensus       334 ~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  365 (437)
T 3gre_A          334 TISVSNDKILLTDEATSSIVMFSLNELSSSKA  365 (437)
T ss_dssp             CEEEETTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred             EEEECCceEEEecCCCCeEEEEECCCcccceE
Confidence            7777654 899999999999999998876543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=5.1e-32  Score=285.33  Aligned_cols=267  Identities=20%  Similarity=0.259  Sum_probs=215.1

Q ss_pred             hhhhhcCCCCCCCCCC--CCCCCcccHHH---------hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 009993          107 FYCERWGLPIASAPLG--AGFSDDKSWKE---------LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF  175 (520)
Q Consensus       107 ~~~~~~~~~~~~~~~~--~~~~~~~~W~~---------~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~  175 (520)
                      +.|..|. |.....+.  +.+...++|+-         ..+.+.+|.+.|.+++|+|++++|++|+.|++|+|||+.++.
T Consensus       385 V~~v~~~-~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~  463 (694)
T 3dm0_A          385 VTAIATP-IDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGV  463 (694)
T ss_dssp             EEEEECC-TTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             eEEEEec-CCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            4566665 33333333  33555688962         245789999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC----CE
Q 009993          176 SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL----TR  249 (520)
Q Consensus       176 ~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~  249 (520)
                      .+..+.+|...|.++.  ++++.|++|+.|++|++||........          ......+|...|.+++|++    ..
T Consensus       464 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~----------~~~~~~~h~~~v~~~~~~~~~~~~~  533 (694)
T 3dm0_A          464 STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYT----------ISEGGEGHRDWVSCVRFSPNTLQPT  533 (694)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE----------ECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred             ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCccee----------eccCCCCCCCcEEEEEEeCCCCcce
Confidence            9999999999888765  899999999999999999975431100          0011246899999999933    57


Q ss_pred             EEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEec
Q 009993          250 IYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARS  325 (520)
Q Consensus       250 l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s  325 (520)
                      +++|+.|++|++||++++++...+. |...|.++.  ++++++++++ |+.|++||+++++.+..+.  +...+.+++|+
T Consensus       534 l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~s  611 (694)
T 3dm0_A          534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE--ANSVIHALCFS  611 (694)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB--CSSCEEEEEEC
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec--CCCcEEEEEEc
Confidence            9999999999999999999988887 899999887  8899999999 9999999999999887764  56789999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecC-------------------CcCCEEEEEecC--CEEEEEeCCC
Q 009993          326 HTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP-------------------HTGPVNSLAFEF--PWLVSAAGDG  384 (520)
Q Consensus       326 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------------------h~~~v~~l~~~~--~~l~s~s~dg  384 (520)
                      |++.++++++ |+.|++||++++      ..+..+..                   +...+++++|+|  .+|++|+.||
T Consensus       612 p~~~~l~~~~-~~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg  684 (694)
T 3dm0_A          612 PNRYWLCAAT-EHGIKIWDLESK------SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG  684 (694)
T ss_dssp             SSSSEEEEEE-TTEEEEEETTTT------EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCcEEEEEc-CCCEEEEECCCC------CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence            9998887775 556999999988      33333322                   122478999976  6999999999


Q ss_pred             cEEEEeCCc
Q 009993          385 KLSLIDVRK  393 (520)
Q Consensus       385 ~i~vwd~~~  393 (520)
                      .|++||+..
T Consensus       685 ~i~iW~i~~  693 (694)
T 3dm0_A          685 VIRVWGIGR  693 (694)
T ss_dssp             EEEEEEC--
T ss_pred             eEEEEeccC
Confidence            999999863

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.3e-32  Score=264.08  Aligned_cols=276  Identities=16%  Similarity=0.193  Sum_probs=223.3

Q ss_pred             hhhhhhcCCCCCCCCCCCC-----CCCcccHHH----hh-hhhccccccEEEEEEccC---CCEEEEEeCCCeEEEEECC
Q 009993          106 EFYCERWGLPIASAPLGAG-----FSDDKSWKE----LI-DVLYGHTEAVLTVFVLAS---AKLLFTSGYDSIVRMWHLE  172 (520)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~-----~~~~~~W~~----~~-~~l~~h~~~V~~l~~~~~---~~~l~sgs~dg~v~vwd~~  172 (520)
                      .+.+..|. |.....+.++     +...++|+.    .. ....+|.+.|++++|+|+   +++|++|+.||.|++||+.
T Consensus        20 ~v~~~~~~-p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~   98 (357)
T 3i2n_A           20 TVFDCKWV-PCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE   98 (357)
T ss_dssp             CEEEEEEC-TTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTT
T ss_pred             ceEEEEEc-CCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCC
Confidence            34667776 5554444444     445688872    22 223489999999999998   6999999999999999999


Q ss_pred             CCc-EEEEeCCCCceEEEE--------ecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCC----C
Q 009993          173 DGF-SIASSKPLGCTIRAV--------AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEG----P  239 (520)
Q Consensus       173 ~~~-~~~~~~~~~~~v~~~--------~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~----~  239 (520)
                      +++ .+..+.+|...|.++        +++++.|++|+.||.|++||+.++..            ....+..|.+    .
T Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~------------~~~~~~~~~~~~~~~  166 (357)
T 3i2n_A           99 APEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD------------PVANMEPVQGENKRD  166 (357)
T ss_dssp             SCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS------------CSEEECCCTTSCCCC
T ss_pred             CCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC------------cceeccccCCCCCCc
Confidence            988 888999999999887        47899999999999999999987631            2334444443    8


Q ss_pred             eEEEE----E--cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--e---CCCEEEEEc-CCeEEEEECCCCee
Q 009993          240 ITSLA----L--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--P---HDTTVASTS-GSDVYIWDTNSGCL  307 (520)
Q Consensus       240 v~~l~----~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~---~~~~l~~~~-d~~i~iwd~~~~~~  307 (520)
                      |.+++    |  ++.++++++.||.|++||+++++......+...|.++.  +   ++..+++++ |+.|++||+++++.
T Consensus       167 v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  246 (357)
T 3i2n_A          167 CWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP  246 (357)
T ss_dssp             EEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET
T ss_pred             eEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc
Confidence            89988    3  77899999999999999999999887777999999988  5   789999998 99999999988766


Q ss_pred             eEEee----cccccceEEEEecCCCC-EEEEEeCCCeEEEEEcccCcccc-------------ceeeeeeecCCcCCEEE
Q 009993          308 LTVVN----GAHVGNTKSLARSHTGD-FLFTGGEDGAIHMYEIINDCTEA-------------NVLLVATWIPHTGPVNS  369 (520)
Q Consensus       308 ~~~~~----~~~~~~i~~l~~s~~~~-~l~tg~~dg~i~iwd~~~~~~~~-------------~~~~~~~~~~h~~~v~~  369 (520)
                      ...+.    .+|...|++++|+|++. +|++|+.||.|++||++.+....             ....+..+.+|..+|++
T Consensus       247 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~  326 (357)
T 3i2n_A          247 TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISS  326 (357)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEE
T ss_pred             ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeE
Confidence            54443    26999999999999998 89999999999999998754321             22467788899999999


Q ss_pred             EEecC--CEEE-EEeCCCcEEEEeCCcc
Q 009993          370 LAFEF--PWLV-SAAGDGKLSLIDVRKL  394 (520)
Q Consensus       370 l~~~~--~~l~-s~s~dg~i~vwd~~~~  394 (520)
                      ++|+|  .+|+ +++.||.|++||+.+.
T Consensus       327 ~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          327 LDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             EEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             EEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence            99976  4676 8999999999999864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-32  Score=277.69  Aligned_cols=254  Identities=11%  Similarity=0.066  Sum_probs=199.3

Q ss_pred             CcccHHH----h----hhhhccccccEEEEEEccC------CCEEEEEeCCCeEEEEECCCCcE-----------EEEeC
Q 009993          127 DDKSWKE----L----IDVLYGHTEAVLTVFVLAS------AKLLFTSGYDSIVRMWHLEDGFS-----------IASSK  181 (520)
Q Consensus       127 ~~~~W~~----~----~~~l~~h~~~V~~l~~~~~------~~~l~sgs~dg~v~vwd~~~~~~-----------~~~~~  181 (520)
                      ..++|+-    +    ..++.+|.+.|.+++|+|+      +.+||+|+.||+|++||+.++..           ...+.
T Consensus       184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~  263 (524)
T 2j04_B          184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS  263 (524)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred             eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence            3578972    1    1346788999999999996      57999999999999999987642           23677


Q ss_pred             CCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEE--E--cC-CEEEEEec
Q 009993          182 PLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA--L--DL-TRIYSGSW  255 (520)
Q Consensus       182 ~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~--~~-~~l~s~s~  255 (520)
                      +|...|.+++ ..+..|++|+.||+|++||+.++.            .....+.+|...|.+++  +  ++ .+|+||+.
T Consensus       264 ~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~------------~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~  331 (524)
T 2j04_B          264 LADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPE------------VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV  331 (524)
T ss_dssp             CTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCS------------SCSEEEECSSSCEEEEEEECCTTSCCEEEEEET
T ss_pred             cCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCC------------CceEEeecccccEEEEEEEcCCCCCeEEEEecc
Confidence            8988998887 234689999999999999997652            23445778999999994  4  45 78999999


Q ss_pred             CCeEEEEECCCCcEEEEee-ecc--CEEEE--eeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCC
Q 009993          256 DMTVRVWDRALLKCLKVLR-HSD--WVYGL--APHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD  329 (520)
Q Consensus       256 dg~v~iwd~~~~~~~~~~~-~~~--~v~~~--~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~  329 (520)
                      |++|++||++++++...+. |..  .|.++  .|++..+++++ |++|++||++++.++..+. +|.+.|++++|+|++.
T Consensus       332 D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~-gH~~~V~sva~Sp~g~  410 (524)
T 2j04_B          332 DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV-SRETTITAIGVSRLHP  410 (524)
T ss_dssp             TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE-ECSSCEEEEECCSSCC
T ss_pred             CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee-cCCCceEEEEeCCCCC
Confidence            9999999999888766654 432  35444  48888898888 8999999999998877776 6999999999999999


Q ss_pred             EEEEEeCCCeEEEEEcccCcccc--------------------------------------ceeeeeeecCCcCCEEEEE
Q 009993          330 FLFTGGEDGAIHMYEIINDCTEA--------------------------------------NVLLVATWIPHTGPVNSLA  371 (520)
Q Consensus       330 ~l~tg~~dg~i~iwd~~~~~~~~--------------------------------------~~~~~~~~~~h~~~v~~l~  371 (520)
                      +|++|+.||+|++||+.......                                      ....+..+.+|...|++|+
T Consensus       411 ~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Va  490 (524)
T 2j04_B          411 MVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTK  490 (524)
T ss_dssp             BCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEE
T ss_pred             eEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEE
Confidence            99999999999999864321000                                      0123445667999999999


Q ss_pred             ecCC-----EEEEEeCCCcEEEEeCCc
Q 009993          372 FEFP-----WLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       372 ~~~~-----~l~s~s~dg~i~vwd~~~  393 (520)
                      |+|+     .+++|+.||.|+||+++.
T Consensus       491 fsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          491 WNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             ECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             CCCCCCccHHHHhhccCceEEEEEccc
Confidence            9885     899999999999999875

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=9.2e-32  Score=263.97  Aligned_cols=271  Identities=17%  Similarity=0.149  Sum_probs=222.3

Q ss_pred             hhhhhhcCCCCCCCCCCCCCCCcccHH----H------hhhhhccccccEEEEEEccC----C---CEEEEEeCCCeEEE
Q 009993          106 EFYCERWGLPIASAPLGAGFSDDKSWK----E------LIDVLYGHTEAVLTVFVLAS----A---KLLFTSGYDSIVRM  168 (520)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~W~----~------~~~~l~~h~~~V~~l~~~~~----~---~~l~sgs~dg~v~v  168 (520)
                      .+.+..|. | ..+...+.+...++|+    +      ....+.+|...|++++|+|+    +   ++|++|+.||.|++
T Consensus        18 ~i~~~~~~-~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~i   95 (397)
T 1sq9_A           18 DIFSVSAC-N-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLF   95 (397)
T ss_dssp             CEEEEEEC-S-SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEE
T ss_pred             CeEEEEec-C-CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEE
Confidence            35666675 3 2222333455567887    3      57778899999999999999    9   99999999999999


Q ss_pred             EECCCCcE-----EEEeCCC-----CceEEE--Ee----cCCCE-EEEEeCCCcEEEEEccc------CcceeeeccCCc
Q 009993          169 WHLEDGFS-----IASSKPL-----GCTIRA--VA----ADKKL-LVAGGTDGFIHCWRAVE------VLPHLFDISGSE  225 (520)
Q Consensus       169 wd~~~~~~-----~~~~~~~-----~~~v~~--~~----~~~~~-l~sg~~dg~i~vwd~~~------~~~~~~~~~~~~  225 (520)
                      ||+.+++.     +..+..|     ...|.+  ++    +++.. |++|+.||.|++||+.+      +....       
T Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------  168 (397)
T 1sq9_A           96 YRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN-------  168 (397)
T ss_dssp             EEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC-------
T ss_pred             EEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceee-------
Confidence            99998887     8888887     466655  45    67999 99999999999999987      42111       


Q ss_pred             cccceEEe-------ccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee----e---ccCEEEEe--eCCC
Q 009993          226 KQNTQFRL-------WEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR----H---SDWVYGLA--PHDT  287 (520)
Q Consensus       226 ~~~~~~~~-------~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~----~---~~~v~~~~--~~~~  287 (520)
                       ......+       ..|...|.+++|  ++ .+++++.||.|++||+++++.+..+.    |   ...|.++.  +++.
T Consensus       169 -~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~  246 (397)
T 1sq9_A          169 -WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS  246 (397)
T ss_dssp             -CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred             -ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCC
Confidence             1111134       458999999999  56 99999999999999999999888886    4   88999887  7899


Q ss_pred             EEEEEc-C---CeEEEEECCCCeeeEEeecc-------------cccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcc
Q 009993          288 TVASTS-G---SDVYIWDTNSGCLLTVVNGA-------------HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT  350 (520)
Q Consensus       288 ~l~~~~-d---~~i~iwd~~~~~~~~~~~~~-------------~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~  350 (520)
                      +|++++ |   +.|++||+++++.+..+. +             |...|.+++|+|++++|++++.||.|++||++++  
T Consensus       247 ~l~~~~~d~~~g~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--  323 (397)
T 1sq9_A          247 LLAIAHDSNSFGCITLYETEFGERIGSLS-VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK--  323 (397)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEC-BC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--
T ss_pred             EEEEEecCCCCceEEEEECCCCcccceec-cCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC--
Confidence            999998 8   999999999999988886 5             8999999999999999999999999999999988  


Q ss_pred             ccceeeeeeec------CC---------------cCCEEEEEecCC------------EEEEEeCCCcEEEEeCCcc
Q 009993          351 EANVLLVATWI------PH---------------TGPVNSLAFEFP------------WLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       351 ~~~~~~~~~~~------~h---------------~~~v~~l~~~~~------------~l~s~s~dg~i~vwd~~~~  394 (520)
                          ..+..+.      +|               ...|++++|+|+            +|++++.||.|++||+.++
T Consensus       324 ----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          324 ----ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             ----EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             ----ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence                6677777      77               999999999764            8999999999999999763

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.2e-31  Score=254.14  Aligned_cols=278  Identities=17%  Similarity=0.221  Sum_probs=230.7

Q ss_pred             hhhhhhcCCCCCCCCC-CCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 009993          106 EFYCERWGLPIASAPL-GAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS  180 (520)
Q Consensus       106 ~~~~~~~~~~~~~~~~-~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~  180 (520)
                      .+.+..|. |+..... .+.+...++|+    +.+..+.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+
T Consensus        34 ~v~~~~~s-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  112 (369)
T 3zwl_B           34 PLTQVKYN-KEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW  112 (369)
T ss_dssp             CEEEEEEC-TTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred             eEEEEEEc-CCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            34566676 4444333 33355668897    557788999999999999999999999999999999999999988888


Q ss_pred             CCCCceEEEEe--cCCCEEEEEeCC-----CcEEEEEcccCcceeeeccCCccccceEEeccCCC--CeEEEEE--cCCE
Q 009993          181 KPLGCTIRAVA--ADKKLLVAGGTD-----GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEG--PITSLAL--DLTR  249 (520)
Q Consensus       181 ~~~~~~v~~~~--~~~~~l~sg~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--~~~~  249 (520)
                      . +...+.++.  +++.++++++.+     |.|.+||+.+.........  ........+..|..  .+.+++|  ++++
T Consensus       113 ~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (369)
T 3zwl_B          113 K-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTK--VSEEPIHKIITHEGLDAATVAGWSTKGKY  189 (369)
T ss_dssp             E-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE--ECSSCSEEEECCTTCCCEEEEEECGGGCE
T ss_pred             e-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecc--cccceeeeccCCcCccceeEEEEcCCCCE
Confidence            7 666666554  999999999999     9999999977642111000  01123445556766  9999999  7789


Q ss_pred             EEEEecCCeEEEEECCC-CcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEe
Q 009993          250 IYSGSWDMTVRVWDRAL-LKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLAR  324 (520)
Q Consensus       250 l~s~s~dg~v~iwd~~~-~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~  324 (520)
                      +++++.||.|++||+++ .+.+..+. |...|.++.  +++.+|++++ |+.|++||+++++.+..+.  +...+.+++|
T Consensus       190 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~  267 (369)
T 3zwl_B          190 IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--TDCPLNTAVI  267 (369)
T ss_dssp             EEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEE
T ss_pred             EEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec--CCCCceeEEe
Confidence            99999999999999998 67777776 888999887  7899999998 9999999999999988886  7889999999


Q ss_pred             cCCCCEEEEEeCCC--------------eEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEE
Q 009993          325 SHTGDFLFTGGEDG--------------AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSL  388 (520)
Q Consensus       325 s~~~~~l~tg~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~v  388 (520)
                      +|++.++++++.++              .+++||+.++      ..+..+.+|...|++++|+|  ++|++++.||.|++
T Consensus       268 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i  341 (369)
T 3zwl_B          268 TPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE------EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRL  341 (369)
T ss_dssp             CSSSSEEEEEECCC-------------CEEEEEETTTC------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             cCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC------cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEE
Confidence            99999999999988              8999999988      67888899999999999976  69999999999999


Q ss_pred             EeCCccc
Q 009993          389 IDVRKLL  395 (520)
Q Consensus       389 wd~~~~~  395 (520)
                      |++.+..
T Consensus       342 w~~~~~~  348 (369)
T 3zwl_B          342 HHFEKSY  348 (369)
T ss_dssp             EEECHHH
T ss_pred             EECcccc
Confidence            9998753

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=6.6e-32  Score=256.34  Aligned_cols=243  Identities=18%  Similarity=0.190  Sum_probs=188.8

Q ss_pred             eCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc----CCEEEEE
Q 009993          180 SKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD----LTRIYSG  253 (520)
Q Consensus       180 ~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~  253 (520)
                      +.+|...|.++.  +++++|++|+.|++|++||+.++.           ......+.+|.+.|.+++|.    +++|++|
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~-----------~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~   77 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG-----------QILIADLRGHEGPVWQVAWAHPMYGNILASC   77 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE-----------EEEEEEEECCSSCEEEEEECCGGGSSCEEEE
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC-----------cEEEEEEcCCCccEEEEEeCCCCCCCEEEEE
Confidence            467888887765  899999999999999999987652           12345678999999999992    6899999


Q ss_pred             ecCCeEEEEECCCCc--EEEEee-eccCEEEEe--eC--CCEEEEEc-CCeEEEEECCCCeee--EEeecccccceEEEE
Q 009993          254 SWDMTVRVWDRALLK--CLKVLR-HSDWVYGLA--PH--DTTVASTS-GSDVYIWDTNSGCLL--TVVNGAHVGNTKSLA  323 (520)
Q Consensus       254 s~dg~v~iwd~~~~~--~~~~~~-~~~~v~~~~--~~--~~~l~~~~-d~~i~iwd~~~~~~~--~~~~~~~~~~i~~l~  323 (520)
                      +.|++|++||+++++  ....+. |...|.+++  |+  +.+|++++ |+.|++||++.+...  .....+|...+.+++
T Consensus        78 s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~  157 (316)
T 3bg1_A           78 SYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVS  157 (316)
T ss_dssp             ETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCE
T ss_pred             ECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEE
Confidence            999999999999874  445554 888999887  55  67899998 999999999876322  223347889999999


Q ss_pred             ecCC-----------------CCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC------CEEEEE
Q 009993          324 RSHT-----------------GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF------PWLVSA  380 (520)
Q Consensus       324 ~s~~-----------------~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~------~~l~s~  380 (520)
                      |+|+                 +.+|++|+.|++|++||++...   ...++..+.+|...|++++|+|      .+|++|
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~---~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~  234 (316)
T 3bg1_A          158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG---QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASC  234 (316)
T ss_dssp             ECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS---CEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEE
T ss_pred             EccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC---ccceeeecccCCCceEEEEecCCCCCCCceEEEE
Confidence            9997                 4689999999999999996541   1135667889999999999986      479999


Q ss_pred             eCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEec--CCEEEEecCCCeEEEEeCC
Q 009993          381 AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       381 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~  451 (520)
                      +.||+|++||+.+....               ......+.+|...|.++.++  +.+|++|+.||+|++|+..
T Consensus       235 s~D~~v~iw~~~~~~~~---------------~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          235 SQDGRVFIWTCDDASSN---------------TWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             ETTCEEEEEECSSTTCC---------------CCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             cCCCeEEEEEccCcccc---------------chhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            99999999998763110               01112234566677777765  4599999999999999975

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=7.3e-32  Score=261.36  Aligned_cols=271  Identities=15%  Similarity=0.153  Sum_probs=218.1

Q ss_pred             hhhhhhcCCC--CCC--CCCCCCCCCcccHH----Hhhhhhcc-----ccccEEEEEEccC----CCEEEEEeCCCeEEE
Q 009993          106 EFYCERWGLP--IAS--APLGAGFSDDKSWK----ELIDVLYG-----HTEAVLTVFVLAS----AKLLFTSGYDSIVRM  168 (520)
Q Consensus       106 ~~~~~~~~~~--~~~--~~~~~~~~~~~~W~----~~~~~l~~-----h~~~V~~l~~~~~----~~~l~sgs~dg~v~v  168 (520)
                      .+.+..|.+.  +..  .....+....++|+    +.+..+..     |.+.|++++|+|+    +++|++|+.||.|++
T Consensus        20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v   99 (366)
T 3k26_A           20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRI   99 (366)
T ss_dssp             CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEE
T ss_pred             ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEE
Confidence            4566777621  112  22223344557887    33344443     5678999999998    679999999999999


Q ss_pred             EECCCCcEEEEeCCCCceEEEEe--c-CCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEe---ccCCCCeEE
Q 009993          169 WHLEDGFSIASSKPLGCTIRAVA--A-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL---WEHEGPITS  242 (520)
Q Consensus       169 wd~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~  242 (520)
                      ||+.+++.+..+.+|...|.++.  | ++.+|++|+.||.|++||+.++.             ....+   .+|...|.+
T Consensus       100 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------------~~~~~~~~~~~~~~v~~  166 (366)
T 3k26_A          100 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT-------------LVAIFGGVEGHRDEVLS  166 (366)
T ss_dssp             ECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE-------------EEEEECSTTSCSSCEEE
T ss_pred             EEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe-------------EEEEecccccccCceeE
Confidence            99999999999999999988876  6 88999999999999999997753             33344   689999999


Q ss_pred             EEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-----------------------------eccCEEEEeeCCCEEEE
Q 009993          243 LAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-----------------------------HSDWVYGLAPHDTTVAS  291 (520)
Q Consensus       243 l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-----------------------------~~~~v~~~~~~~~~l~~  291 (520)
                      ++|  ++++|++++.||.|++||+++++....+.                             |...|.++...++++++
T Consensus       167 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~  246 (366)
T 3k26_A          167 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILS  246 (366)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEE
T ss_pred             EEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEE
Confidence            999  67899999999999999998876543322                             78889999977999999


Q ss_pred             Ec-CCeEEEEECCCCee--------------eEEeecccccceEEEEecCC--CCEEEEEeCCCeEEEEEcccCccccce
Q 009993          292 TS-GSDVYIWDTNSGCL--------------LTVVNGAHVGNTKSLARSHT--GDFLFTGGEDGAIHMYEIINDCTEANV  354 (520)
Q Consensus       292 ~~-d~~i~iwd~~~~~~--------------~~~~~~~~~~~i~~l~~s~~--~~~l~tg~~dg~i~iwd~~~~~~~~~~  354 (520)
                      ++ |+.|++||+.++..              +..+. +|...|++++|+|+  +.+|++|+.||.|++||+.++....  
T Consensus       247 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--  323 (366)
T 3k26_A          247 KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD-YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK--  323 (366)
T ss_dssp             ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE-CSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG--
T ss_pred             EecCCEEEEEeCCCccccccccccCCcchheecccc-ccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc--
Confidence            99 99999999987643              55555 68889999999999  9999999999999999999874322  


Q ss_pred             eeeeeecCC--cCCEEEEEecC--CEEEEEeCCCcEEEEeCC
Q 009993          355 LLVATWIPH--TGPVNSLAFEF--PWLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       355 ~~~~~~~~h--~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~  392 (520)
                      .....+.+|  ...|++++|+|  ++|++++.||.|++||+.
T Consensus       324 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          324 AKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             CEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             ccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            134466677  79999999976  699999999999999985

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-31  Score=284.61  Aligned_cols=247  Identities=16%  Similarity=0.140  Sum_probs=203.4

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECC--CCcEEEEeCCCCceEEEEe--cC--CCEEEEEeCCCcEEE
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLE--DGFSIASSKPLGCTIRAVA--AD--KKLLVAGGTDGFIHC  208 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~~~v~~~~--~~--~~~l~sg~~dg~i~v  208 (520)
                      +.++.||.+.|++++|+|++++|++|+.||+|+|||+.  ++..+..+.+|...|.++.  ++  +++|++|+.||.|++
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            46789999999999999999999999999999999998  5577888999999998877  55  899999999999999


Q ss_pred             EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--c--CCEEEEEecCCeEEEEECCCCcEE--EEe-eeccCEEE
Q 009993          209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D--LTRIYSGSWDMTVRVWDRALLKCL--KVL-RHSDWVYG  281 (520)
Q Consensus       209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~--~~~l~s~s~dg~v~iwd~~~~~~~--~~~-~~~~~v~~  281 (520)
                      ||+.++.           ......+.+|...|.+++|  +  ++.+++|+.||+|++||++++...  ..+ .|...|.+
T Consensus        82 wd~~~~~-----------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~  150 (753)
T 3jro_A           82 WKEENGR-----------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS  150 (753)
T ss_dssp             EEEETTE-----------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEE
T ss_pred             EECCCCc-----------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEE
Confidence            9997753           2245667789999999999  4  789999999999999999887332  222 38889999


Q ss_pred             Ee--e-------------CCCEEEEEc-CCeEEEEECCCC----eeeEEeecccccceEEEEecCC---CCEEEEEeCCC
Q 009993          282 LA--P-------------HDTTVASTS-GSDVYIWDTNSG----CLLTVVNGAHVGNTKSLARSHT---GDFLFTGGEDG  338 (520)
Q Consensus       282 ~~--~-------------~~~~l~~~~-d~~i~iwd~~~~----~~~~~~~~~~~~~i~~l~~s~~---~~~l~tg~~dg  338 (520)
                      +.  |             ++..+++++ ||.|++||++++    .....+. +|...|++++|+|+   +.++++|+.||
T Consensus       151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~~~l~s~s~Dg  229 (753)
T 3jro_A          151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASVSQDR  229 (753)
T ss_dssp             EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEESSS
T ss_pred             EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec-CCCCcEEEEEeccCCCCCCEEEEEecCC
Confidence            88  4             477888888 999999999887    4445554 69999999999999   89999999999


Q ss_pred             eEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993          339 AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       339 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  394 (520)
                      .|++||++++..... ........|...|++++|+|  .+|++|+.||.|++||+...
T Consensus       230 ~I~iwd~~~~~~~~~-~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          230 TCIIWTQDNEQGPWK-KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             CEEEEEESSSSSCCB-CCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             EEEEecCCCCCCcce-eEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence            999999988632111 23444556889999999976  69999999999999999864

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-31  Score=249.54  Aligned_cols=261  Identities=16%  Similarity=0.162  Sum_probs=219.4

Q ss_pred             hhhhhcCCCCCCC-CCCCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC---cEEE
Q 009993          107 FYCERWGLPIASA-PLGAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG---FSIA  178 (520)
Q Consensus       107 ~~~~~~~~~~~~~-~~~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~---~~~~  178 (520)
                      +.+..|  |.... ...+.+...++|+    .....+.+|.+.|.+++|+|++++|++|+.||.|++|++...   +.+.
T Consensus        21 v~~~~~--~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~   98 (313)
T 3odt_A           21 VRDVVA--VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLY   98 (313)
T ss_dssp             EEEEEE--EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-C
T ss_pred             cEEEEe--cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCccc
Confidence            455555  33333 2333455568898    456778899999999999999999999999999999998654   5677


Q ss_pred             EeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEec
Q 009993          179 SSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSW  255 (520)
Q Consensus       179 ~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~  255 (520)
                      .+.+|...+.++..+++.+++|+.||.|++||.               ......+..|...|.++.+   +++.+++++.
T Consensus        99 ~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~---------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  163 (313)
T 3odt_A           99 TLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKE---------------GSLVYNLQAHNASVWDAKVVSFSENKFLTASA  163 (313)
T ss_dssp             EECCCSSCEEEEEEETTEEEEEETTSEEEEEET---------------TEEEEEEECCSSCEEEEEEEETTTTEEEEEET
T ss_pred             chhhcccCEEEEEecCCEEEEEeCCCCEEEEcC---------------CcEEEecccCCCceeEEEEccCCCCEEEEEEC
Confidence            888999999999999999999999999999992               2255667789999999998   6799999999


Q ss_pred             CCeEEEEECCCCcEEEEee--eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCE
Q 009993          256 DMTVRVWDRALLKCLKVLR--HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDF  330 (520)
Q Consensus       256 dg~v~iwd~~~~~~~~~~~--~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~  330 (520)
                      ||.|++||  ..+....+.  +...+.++.  +++. +++++ |+.|++||+++++.+..+. +|...|++++|+|++ .
T Consensus       164 d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~-~  238 (313)
T 3odt_A          164 DKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE-GHESFVYCIKLLPNG-D  238 (313)
T ss_dssp             TSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTS-C
T ss_pred             CCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh-cCCceEEEEEEecCC-C
Confidence            99999999  445555554  888898887  6777 66666 9999999999999998887 699999999999999 5


Q ss_pred             EEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCC-EEEEEeCCCcEEEEeCCccc
Q 009993          331 LFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP-WLVSAAGDGKLSLIDVRKLL  395 (520)
Q Consensus       331 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~  395 (520)
                      +++++.||.|++||++++      ..+..+..|...|++++|+|+ .+++++.||.|++||+++..
T Consensus       239 l~~~~~dg~v~iwd~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~  298 (313)
T 3odt_A          239 IVSCGEDRTVRIWSKENG------SLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSR  298 (313)
T ss_dssp             EEEEETTSEEEEECTTTC------CEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGG
T ss_pred             EEEEecCCEEEEEECCCC------ceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCc
Confidence            889999999999999998      678888899999999999763 57889999999999998754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.5e-31  Score=257.35  Aligned_cols=277  Identities=16%  Similarity=0.158  Sum_probs=221.2

Q ss_pred             hhhhhcCCCCCCCCCC-CCCCCcccHH----H--hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 009993          107 FYCERWGLPIASAPLG-AGFSDDKSWK----E--LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIAS  179 (520)
Q Consensus       107 ~~~~~~~~~~~~~~~~-~~~~~~~~W~----~--~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~  179 (520)
                      +.+..|. |+...... +.....++|+    +  .+..+.+|.+.|++++|+|++++|++|+.||.|++||+.+++....
T Consensus        11 i~~~~~s-~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   89 (372)
T 1k8k_C           11 ISCHAWN-KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT   89 (372)
T ss_dssp             CCEEEEC-TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred             eEEEEEC-CCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeee
Confidence            4566676 45444333 3455568887    2  6778899999999999999999999999999999999988875444


Q ss_pred             --eCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEE
Q 009993          180 --SKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG  253 (520)
Q Consensus       180 --~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~  253 (520)
                        +..|...+.++.  +++++|++|+.||.|++||+.++...         ........+|...|.+++|  ++++++++
T Consensus        90 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  160 (372)
T 1k8k_C           90 LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW---------WVCKHIKKPIRSTVLSLDWHPNSVLLAAG  160 (372)
T ss_dssp             EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE---------EEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred             EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcc---------eeeeeeecccCCCeeEEEEcCCCCEEEEE
Confidence              366777777665  89999999999999999999776311         0122233678999999999  67899999


Q ss_pred             ecCCeEEEEEC------------------CCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEe
Q 009993          254 SWDMTVRVWDR------------------ALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVV  311 (520)
Q Consensus       254 s~dg~v~iwd~------------------~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~  311 (520)
                      +.||.|++||+                  .+++.+..+. |...|.++.  +++.++++++ |+.|++||+++++.+..+
T Consensus       161 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  240 (372)
T 1k8k_C          161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL  240 (372)
T ss_dssp             ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred             cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE
Confidence            99999999995                  4677888775 888899887  7888999998 999999999999999888


Q ss_pred             ecccccceEEEEecCCCCEEEEEeCCCeEEEEEccc--Ccc--c------------------------cceeee------
Q 009993          312 NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIN--DCT--E------------------------ANVLLV------  357 (520)
Q Consensus       312 ~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~--~~~--~------------------------~~~~~~------  357 (520)
                      . .|...|.+++|+|++.++++| .|+.|++|++..  +..  .                        ......      
T Consensus       241 ~-~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (372)
T 1k8k_C          241 A-SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG  318 (372)
T ss_dssp             E-CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------
T ss_pred             c-cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccc
Confidence            7 588899999999999988887 999999999988  310  0                        000010      


Q ss_pred             eee-cCCcCCEEEEEec-C-----CEEEEEeCCCcEEEEeCCccc
Q 009993          358 ATW-IPHTGPVNSLAFE-F-----PWLVSAAGDGKLSLIDVRKLL  395 (520)
Q Consensus       358 ~~~-~~h~~~v~~l~~~-~-----~~l~s~s~dg~i~vwd~~~~~  395 (520)
                      ..+ .+|..+|++++|. +     .+|++|+.||.|++||+++..
T Consensus       319 ~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          319 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             ccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence            223 4899999999963 3     699999999999999998753

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.6e-32  Score=265.06  Aligned_cols=272  Identities=13%  Similarity=0.060  Sum_probs=205.4

Q ss_pred             hhhhhcCCCCCCCCC-CCCCCCcccHH------HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc---E
Q 009993          107 FYCERWGLPIASAPL-GAGFSDDKSWK------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF---S  176 (520)
Q Consensus       107 ~~~~~~~~~~~~~~~-~~~~~~~~~W~------~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~---~  176 (520)
                      +.|..|. |+..... .+.+...++|+      +....+.+|.+.|++++|+|++++|++|+.|++|++||+.++.   .
T Consensus        14 v~~~~~s-~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~   92 (377)
T 3dwl_C           14 SYEHAFN-SQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ   92 (377)
T ss_dssp             CSCCEEC-SSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCC
T ss_pred             EEEEEEC-CCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceee
Confidence            4567776 4544433 33466678887      3567889999999999999999999999999999999999887   6


Q ss_pred             EEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEecc-CCCCeEEEEE--cCCEEE
Q 009993          177 IASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE-HEGPITSLAL--DLTRIY  251 (520)
Q Consensus       177 ~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~  251 (520)
                      ...+.+|...|.++.  +++++|++|+.|+.|++||+.++..          ......+.+ |...|.+++|  ++++|+
T Consensus        93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------~~~~~~~~~~h~~~v~~~~~~~~~~~l~  162 (377)
T 3dwl_C           93 TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND----------WWVSKHLKRPLRSTILSLDWHPNNVLLA  162 (377)
T ss_dssp             EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC---------------CCCCEEECSSCCSCEEEEEECTTSSEEE
T ss_pred             eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc----------ceeeeEeecccCCCeEEEEEcCCCCEEE
Confidence            777888999888876  8899999999999999999877531          113455666 9999999999  678999


Q ss_pred             EEecCCeEEEEECC------------------CCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCee---
Q 009993          252 SGSWDMTVRVWDRA------------------LLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCL---  307 (520)
Q Consensus       252 s~s~dg~v~iwd~~------------------~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~---  307 (520)
                      +++.|++|++||++                  .++++..+.|...|.++.  |++++|++++ |+.|++||+++++.   
T Consensus       163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~  242 (377)
T 3dwl_C          163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR  242 (377)
T ss_dssp             EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred             EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce
Confidence            99999999999985                  344555556888899887  8899999988 99999999999877   


Q ss_pred             -eEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccc--cc----------------------ee-------
Q 009993          308 -LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE--AN----------------------VL-------  355 (520)
Q Consensus       308 -~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~--~~----------------------~~-------  355 (520)
                       +..+. +|...|.+++|+|++++|++|+.|+.+ +|+.......  ..                      ..       
T Consensus       243 ~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (377)
T 3dwl_C          243 ALITVK-LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTAL  320 (377)
T ss_dssp             ECCCEE-CSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---------
T ss_pred             eeEeec-CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccc
Confidence             66665 699999999999999999999877766 6666522100  00                      00       


Q ss_pred             ---------------eeeeecCCcCCEEEEEecC---C---EEEEEeCCCcEEEEeC
Q 009993          356 ---------------LVATWIPHTGPVNSLAFEF---P---WLVSAAGDGKLSLIDV  391 (520)
Q Consensus       356 ---------------~~~~~~~h~~~v~~l~~~~---~---~l~s~s~dg~i~vwd~  391 (520)
                                     .......|...|+++.+.+   .   .|+||+.||.|++||+
T Consensus       321 ~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          321 RSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             ----------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                           0011123999999999743   2   6999999999999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=7.9e-31  Score=256.16  Aligned_cols=294  Identities=11%  Similarity=0.117  Sum_probs=210.5

Q ss_pred             ECCCCcEEEEeCCCCceEEEEe--cCC-CEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc
Q 009993          170 HLEDGFSIASSKPLGCTIRAVA--ADK-KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD  246 (520)
Q Consensus       170 d~~~~~~~~~~~~~~~~v~~~~--~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  246 (520)
                      ++.+......+.+|...|.++.  +++ ++|++|+.||.|++||+.++..           .......+|...|.+++|.
T Consensus        59 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~~~~h~~~v~~~~~~  127 (383)
T 3ei3_B           59 SLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK-----------TSFIQGMGPGDAITGMKFN  127 (383)
T ss_dssp             HHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC-----------EEEECCCSTTCBEEEEEEE
T ss_pred             cccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc-----------ceeeecCCcCCceeEEEeC
Confidence            3345556667788888888776  787 8999999999999999986531           1222334799999999994


Q ss_pred             ---CCEEEEEecCCeEEEEECCCCcEEEEee----eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccc
Q 009993          247 ---LTRIYSGSWDMTVRVWDRALLKCLKVLR----HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHV  316 (520)
Q Consensus       247 ---~~~l~s~s~dg~v~iwd~~~~~~~~~~~----~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~  316 (520)
                         +++|++++.|++|++||+++ ..+..+.    +...|.++.  ++++++++++ |+.|++||+ +++.+..+. +|.
T Consensus       128 ~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~-~h~  204 (383)
T 3ei3_B          128 QFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK-LHK  204 (383)
T ss_dssp             TTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE-CSS
T ss_pred             CCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec-cCC
Confidence               47899999999999999986 4444443    347788877  8899999999 999999999 567777776 699


Q ss_pred             cceEEEEecCCCC-EEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCC
Q 009993          317 GNTKSLARSHTGD-FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       317 ~~i~~l~~s~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~  392 (520)
                      ..|.+++|+|++. ++++|+.|+.|++||+++.....  ..+..+ +|...|++++|+|   .+|++++.|+.|++||++
T Consensus       205 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~  281 (383)
T 3ei3_B          205 AKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN--SYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY  281 (383)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT--CEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred             CcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc--ceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence            9999999999999 99999999999999999843211  344444 6999999999977   699999999999999998


Q ss_pred             cccccCCCCCCCceeeeeecCCCcccccCcceee--EEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccch
Q 009993          393 KLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL--LSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLEN  470 (520)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  470 (520)
                      +.............  .................+  .++++++.+  +|+.||.|++||+.++..+......        
T Consensus       282 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~--------  349 (383)
T 3ei3_B          282 DWSKPDQIIIHPHR--QFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDP--------  349 (383)
T ss_dssp             BTTSCSEEEECCBC--CCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBT--------
T ss_pred             CCcccccccccccc--ccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCC--------
Confidence            76433211100000  000000000000011122  334445555  8899999999999887653322110        


Q ss_pred             hhhhccceeeeccCCCcccccc
Q 009993          471 RMRRRKLQTEMSSKGGRTDQCS  492 (520)
Q Consensus       471 ~~~~~~~~~~~s~~g~~~~~~s  492 (520)
                      ........++|+|+|+.+++++
T Consensus       350 ~~~~~~~~~~~s~~g~~l~s~s  371 (383)
T 3ei3_B          350 NAAGIISLNKFSPTGDVLASGM  371 (383)
T ss_dssp             TBCSCCCEEEECTTSSEEEEEE
T ss_pred             CCCceEEEEEEecCccEEEEec
Confidence            1122345569999999998874

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1e-31  Score=263.71  Aligned_cols=299  Identities=7%  Similarity=-0.040  Sum_probs=217.9

Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcc
Q 009993          139 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLP  216 (520)
Q Consensus       139 ~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~  216 (520)
                      +.-...|.+++|+|||+++||++.|++|+  |...++.   +.+|...|.++.  |+|       .++.+.+|+....  
T Consensus        12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~--   77 (588)
T 2j04_A           12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD---INCNSKNLFHVKEFPLE-------FENKLDFELAQQN--   77 (588)
T ss_dssp             CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC---CSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS--
T ss_pred             hHhhccEEEEEECCCCCEEEEEcCCceee--cccccce---ecCCCccEEEEEECCCC-------CcceEEEEeCCCc--
Confidence            34568899999999999999999999999  7655544   468888777665  777       4566555553221  


Q ss_pred             eeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeecc-----CEEEEe--eCCC
Q 009993          217 HLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSD-----WVYGLA--PHDT  287 (520)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-----~v~~~~--~~~~  287 (520)
                                  ....+ .|...|.+++|  +|.+|++++.||+|++||..+  ++..+.|..     .|.+++  |+|+
T Consensus        78 ------------~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~  142 (588)
T 2j04_A           78 ------------GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIES  142 (588)
T ss_dssp             ------------CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSS
T ss_pred             ------------eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCC
Confidence                        11111 45789999999  889999999999999999654  555555443     488877  9999


Q ss_pred             EEEEEc-CCeEEEEECCCCee-------eEEee---cccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceee
Q 009993          288 TVASTS-GSDVYIWDTNSGCL-------LTVVN---GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL  356 (520)
Q Consensus       288 ~l~~~~-d~~i~iwd~~~~~~-------~~~~~---~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~  356 (520)
                      +|++|+ ||+|++||+.++..       +..+.   .+|...|.+++|+|+|  +++++.|++|++||+.++...   ..
T Consensus       143 ~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~---~~  217 (588)
T 2j04_A          143 SIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ---PV  217 (588)
T ss_dssp             CEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC---CC
T ss_pred             EEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc---cc
Confidence            999999 99999999998852       55653   4688899999999999  888999999999999887310   12


Q ss_pred             eeee-cCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEe--cC
Q 009993          357 VATW-IPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GA  433 (520)
Q Consensus       357 ~~~~-~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~  433 (520)
                      ..++ .+|...|.+++|+++.|++++ +++|++||+.+...                   .....+|...+..+.+  ++
T Consensus       218 ~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~-------------------~~~~~gh~~~V~~va~~~s~  277 (588)
T 2j04_A          218 SRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSI-------------------SSLKTGSLENFHIIPLNHEK  277 (588)
T ss_dssp             EEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEE-------------------EEEECSCCSCCCEEEETTCS
T ss_pred             eeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeE-------------------EEEEcCCCceEEEEEeeeCC
Confidence            3455 478899999999878999887 69999999987421                   1112367777777766  55


Q ss_pred             C--EEEEecCCCeEEEEeCC-----c-hHhHHHHhhhh-------cccccchhhhhccceeeeccCCCccccccc
Q 009993          434 D--RIVCGGEEGIVRIWNFS-----Q-AFEIERRARAL-------RGIRLENRMRRRKLQTEMSSKGGRTDQCSV  493 (520)
Q Consensus       434 ~--~l~sg~~Dg~v~iwd~~-----~-~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~  493 (520)
                      +  .++++++||+ ++|.+.     . +..+.......       ......+. ...+..++|||||..+|+++-
T Consensus       278 d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          278 ESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             SCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred             CCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence            4  8999999999 999973     1 11111110000       00000111 233677999999999888754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.98  E-value=1.1e-31  Score=266.85  Aligned_cols=301  Identities=14%  Similarity=0.142  Sum_probs=200.1

Q ss_pred             CCCCceEEEEe--c-CCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEe
Q 009993          181 KPLGCTIRAVA--A-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGS  254 (520)
Q Consensus       181 ~~~~~~v~~~~--~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s  254 (520)
                      .+|...|++++  | ++++||+|+.||.|+|||+.++.           ......+.+|.+.|++++|   ++++|++|+
T Consensus       116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~-----------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s  184 (435)
T 4e54_B          116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD-----------KPTFIKGIGAGGSITGLKFNPLNTNQFYASS  184 (435)
T ss_dssp             EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS-----------CCEEECCCSSSCCCCEEEECSSCTTEEEEEC
T ss_pred             CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC-----------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEe
Confidence            34555666665  5 56799999999999999987653           2234456789999999999   468999999


Q ss_pred             cCCeEEEEECCCCcEEEEee---eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCC
Q 009993          255 WDMTVRVWDRALLKCLKVLR---HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG  328 (520)
Q Consensus       255 ~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~  328 (520)
                      .||+|++||++++.......   +...+.++.  +++.+|++|+ ||.|++||++. +.+..+. +|...|++++|+|++
T Consensus       185 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~-~h~~~v~~v~~~p~~  262 (435)
T 4e54_B          185 MEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLR-MHKKKVTHVALNPCC  262 (435)
T ss_dssp             SSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSB-CCSSCEEEEEECTTC
T ss_pred             CCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEe-cccceEEeeeecCCC
Confidence            99999999998765443333   233455554  8999999999 99999999875 4455555 699999999999987


Q ss_pred             C-EEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCc
Q 009993          329 D-FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKR  405 (520)
Q Consensus       329 ~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  405 (520)
                      . ++++|+.|+.|++||+++....   .......+|...|++++|+|  .+|++++.||.|+|||+.++...........
T Consensus       263 ~~~~~s~s~d~~v~iwd~~~~~~~---~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~  339 (435)
T 4e54_B          263 DWFLATASVDQTVKIWDLRQVRGK---ASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH  339 (435)
T ss_dssp             SSEEEEEETTSBCCEEETTTCCSS---SCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCC
T ss_pred             ceEEEEecCcceeeEEeccccccc---ceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccc
Confidence            6 7889999999999999887322   22334468999999999976  6999999999999999987533221111100


Q ss_pred             eeeeeecCCCcccccCccee--eEEEEecCC-EEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhcccee-ee
Q 009993          406 VSRVIEVEPPQRMLHGFECN--LLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQT-EM  481 (520)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  481 (520)
                      ..  ................  +.+..+++. .++++..++.|++||..++..+....         ......+..+ +|
T Consensus       340 ~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~---------~~~~~~v~s~~~f  408 (435)
T 4e54_B          340 RH--FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY---------DPESSGISSLNEF  408 (435)
T ss_dssp             CC--CSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC---------CSSCCCCCCEEEE
T ss_pred             cc--cccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe---------CCCCCcEEEEEEE
Confidence            00  0000000000011111  222223344 33444456789999999876543221         1122233444 79


Q ss_pred             ccCCCcccccccccccCCCCCCcceeeecccCCCCc
Q 009993          482 SSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSGK  517 (520)
Q Consensus       482 s~~g~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  517 (520)
                      +|+|..+++++        + ++..||..+.+..+|
T Consensus       409 spdg~~lasg~--------d-~~i~iW~~~~gk~rK  435 (435)
T 4e54_B          409 NPMGDTLASAM--------G-YHILIWSQQEARTRK  435 (435)
T ss_dssp             CTTSSCEEEEC--------S-SEEEECCCC------
T ss_pred             CCCCCEEEEEc--------C-CcEEEEECCcCeeeC
Confidence            99999987653        1 235799876554443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=2.5e-30  Score=254.34  Aligned_cols=279  Identities=13%  Similarity=0.138  Sum_probs=215.6

Q ss_pred             EEEEEEccCCCE-EEEEeCCCeEEEEECCCCc----EEEEeCCCCceEEEEe--c-CCCEEEEEeCCCcEEEEEcccCcc
Q 009993          145 VLTVFVLASAKL-LFTSGYDSIVRMWHLEDGF----SIASSKPLGCTIRAVA--A-DKKLLVAGGTDGFIHCWRAVEVLP  216 (520)
Q Consensus       145 V~~l~~~~~~~~-l~sgs~dg~v~vwd~~~~~----~~~~~~~~~~~v~~~~--~-~~~~l~sg~~dg~i~vwd~~~~~~  216 (520)
                      ...++++|+... +++|+.||.|+||++....    .+..+.+|...|.++.  + ++++|++|+.||.|++||+.++..
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~  116 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL  116 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence            345788887654 4457899999999996652    3445778999998876  6 889999999999999999987631


Q ss_pred             eeeeccCCccccceEEeccCCCCeEEEEE--cC-CEEEEEecCCeEEEEECCCCcEEEEe--e-eccCEEEEe--eCCCE
Q 009993          217 HLFDISGSEKQNTQFRLWEHEGPITSLAL--DL-TRIYSGSWDMTVRVWDRALLKCLKVL--R-HSDWVYGLA--PHDTT  288 (520)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~s~s~dg~v~iwd~~~~~~~~~~--~-~~~~v~~~~--~~~~~  288 (520)
                      ..      ........+.+|...|.+++|  ++ ++|++++.||+|++||+++++.+..+  . |...|.++.  +++.+
T Consensus       117 ~~------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  190 (402)
T 2aq5_A          117 VL------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL  190 (402)
T ss_dssp             SS------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC
T ss_pred             cc------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE
Confidence            10      011356678899999999999  44 68999999999999999999999888  4 889999988  78999


Q ss_pred             EEEEc-CCeEEEEECCCCeeeEEeecccccc-eEEEEecCCCCEEEEE---eCCCeEEEEEcccCccccceeeeeeecCC
Q 009993          289 VASTS-GSDVYIWDTNSGCLLTVVNGAHVGN-TKSLARSHTGDFLFTG---GEDGAIHMYEIINDCTEANVLLVATWIPH  363 (520)
Q Consensus       289 l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~-i~~l~~s~~~~~l~tg---~~dg~i~iwd~~~~~~~~~~~~~~~~~~h  363 (520)
                      |++++ |+.|++||+++++.+..+..+|.+. +.++.|+|++.+|++|   +.|+.|++||+++....    .......|
T Consensus       191 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~----~~~~~~~~  266 (402)
T 2aq5_A          191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP----LSLQELDT  266 (402)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC----SEEEECCC
T ss_pred             EEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC----ceEEeccC
Confidence            99988 9999999999999998884467765 8999999999999999   79999999999887421    11122357


Q ss_pred             cCCEEEEEecC--CEEE-EEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccC--cceeeEEEEecCC--EE
Q 009993          364 TGPVNSLAFEF--PWLV-SAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG--FECNLLSVDIGAD--RI  436 (520)
Q Consensus       364 ~~~v~~l~~~~--~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~--~l  436 (520)
                      ...+.+++|+|  .+|+ +|+.||.|++||+.+...                  ....+..  |...+.++.+.++  ++
T Consensus       267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~------------------~~~~l~~~~~~~~v~~~~~sp~~~~~  328 (402)
T 2aq5_A          267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP------------------FLHYLSMFSSKESQRGMGYMPKRGLE  328 (402)
T ss_dssp             CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT------------------CEEEEEEECCSSCCSEEEECCGGGSC
T ss_pred             CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc------------------ceEeecccccCCcccceEEecccccc
Confidence            77899999976  4665 566799999999987421                  1111222  3355666666655  54


Q ss_pred             EEecCCCeEEEEeCCch
Q 009993          437 VCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       437 ~sg~~Dg~v~iwd~~~~  453 (520)
                      +  +.|+.+++|++.++
T Consensus       329 ~--s~~~~~~~~~l~~~  343 (402)
T 2aq5_A          329 V--NKCEIARFYKLHER  343 (402)
T ss_dssp             G--GGTEEEEEEEEETT
T ss_pred             e--ecceeEEEEEcCCC
Confidence            4  45679999999864

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=1.4e-30  Score=256.13  Aligned_cols=318  Identities=17%  Similarity=0.171  Sum_probs=231.2

Q ss_pred             CCeEEEEECCCCcEEEEeCCCCceEEEEe--c-CCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCC
Q 009993          163 DSIVRMWHLEDGFSIASSKPLGCTIRAVA--A-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGP  239 (520)
Q Consensus       163 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  239 (520)
                      ++.+++|+++.++....+.+|...|.++.  | ++++|++|+.||.|++||+.++....................+|...
T Consensus        22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (408)
T 4a11_B           22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS  101 (408)
T ss_dssp             HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred             cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence            45678888888888888899999998876  7 89999999999999999998764211000000000000011359999


Q ss_pred             eEEEEE---cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--e---CCCEEEEEc-CCeEEEEECCCCeeeEE
Q 009993          240 ITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--P---HDTTVASTS-GSDVYIWDTNSGCLLTV  310 (520)
Q Consensus       240 v~~l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~---~~~~l~~~~-d~~i~iwd~~~~~~~~~  310 (520)
                      |.+++|   ++.++++++.||.|++||+.+++....+.+...+.++.  +   ++.++++++ ++.|++||+++++.+..
T Consensus       102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  181 (408)
T 4a11_B          102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI  181 (408)
T ss_dssp             EEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE
T ss_pred             EEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee
Confidence            999999   44689999999999999999999999998888888877  3   455888888 99999999999998888


Q ss_pred             eecccccceEEEEecCCCC-EEEEEeCCCeEEEEEcccCcccc----------ceeeeeeecCCcCCEEEEEecC--CEE
Q 009993          311 VNGAHVGNTKSLARSHTGD-FLFTGGEDGAIHMYEIINDCTEA----------NVLLVATWIPHTGPVNSLAFEF--PWL  377 (520)
Q Consensus       311 ~~~~~~~~i~~l~~s~~~~-~l~tg~~dg~i~iwd~~~~~~~~----------~~~~~~~~~~h~~~v~~l~~~~--~~l  377 (520)
                      +. +|...|.+++|+|++. ++++|+.||.|++||++......          .........+|...|++++|+|  .+|
T Consensus       182 ~~-~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  260 (408)
T 4a11_B          182 LQ-GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL  260 (408)
T ss_dssp             EC-CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEE
T ss_pred             ec-CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEE
Confidence            87 6999999999999998 58999999999999998764110          0011222367899999999976  699


Q ss_pred             EEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEE-ecCCEEEEecCCCeEEEEeCCchHhH
Q 009993          378 VSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD-IGADRIVCGGEEGIVRIWNFSQAFEI  456 (520)
Q Consensus       378 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~l~sg~~Dg~v~iwd~~~~~~~  456 (520)
                      ++++.||.|++||+.++...........            . ........... .....+++++.||.|++||+.++..+
T Consensus       261 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~  327 (408)
T 4a11_B          261 LTVGTDNRMRLWNSSNGENTLVNYGKVC------------N-NSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI  327 (408)
T ss_dssp             EEEETTSCEEEEETTTCCBCCCCCCCCC------------C-CCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE
T ss_pred             EEecCCCeEEEEECCCCccceecccccc------------c-cccccceeEEecCCCceEEEEecCCEEEEEECcCCcce
Confidence            9999999999999998643322111100            0 00111111222 22347777788999999999887544


Q ss_pred             HHHhhhhcccccchhhhhccceeeeccCCCcccccccccccCCCCCCcceeeeccc
Q 009993          457 ERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKR  512 (520)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~~~~~~~~~~~~~~~~~~~  512 (520)
                      ...          ..+...+..++|+|+|..+++++.+.        ...+|....
T Consensus       328 ~~~----------~~~~~~v~~~~~s~~~~~l~s~~~dg--------~i~iw~~~~  365 (408)
T 4a11_B          328 TML----------KGHYKTVDCCVFQSNFQELYSGSRDC--------NILAWVPSL  365 (408)
T ss_dssp             EEE----------CCCSSCEEEEEEETTTTEEEEEETTS--------CEEEEEECC
T ss_pred             eee----------ccCCCeEEEEEEcCCCCEEEEECCCC--------eEEEEeCCC
Confidence            221          22345578999999999999877532        246777643

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.7e-29  Score=245.86  Aligned_cols=250  Identities=18%  Similarity=0.192  Sum_probs=197.7

Q ss_pred             cEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc----CC
Q 009993          175 FSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD----LT  248 (520)
Q Consensus       175 ~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~  248 (520)
                      +.+..+.+|...|.++.  +++++|++|+.||.|++||+....           ......+.+|...|++++|.    ++
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~   70 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----------HKLIDTLTGHEGPVWRVDWAHPKFGT   70 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-----------EEEEEEECCCSSCEEEEEECCGGGCS
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-----------ceeeeEecCCCCcEEEEEeCCCCCCC
Confidence            45667788999888776  899999999999999999987432           23556778999999999993    78


Q ss_pred             EEEEEecCCeEEEEECCCCc--EEEEee-eccCEEEEe--eC--CCEEEEEc-CCeEEEEECCCCee--eEEeecccccc
Q 009993          249 RIYSGSWDMTVRVWDRALLK--CLKVLR-HSDWVYGLA--PH--DTTVASTS-GSDVYIWDTNSGCL--LTVVNGAHVGN  318 (520)
Q Consensus       249 ~l~s~s~dg~v~iwd~~~~~--~~~~~~-~~~~v~~~~--~~--~~~l~~~~-d~~i~iwd~~~~~~--~~~~~~~~~~~  318 (520)
                      +|++|+.||.|++||+.+++  .+..+. |...|.++.  ++  +.++++++ |+.|++||++++..  ...+. +|...
T Consensus        71 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~  149 (379)
T 3jrp_A           71 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIG  149 (379)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE-CCTTC
T ss_pred             EEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEec-CCCCc
Confidence            99999999999999999987  555554 888999988  66  78899988 99999999998733  33333 68999


Q ss_pred             eEEEEecC-------------CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-----CEEEEE
Q 009993          319 TKSLARSH-------------TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-----PWLVSA  380 (520)
Q Consensus       319 i~~l~~s~-------------~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~l~s~  380 (520)
                      |.+++|+|             ++.++++|+.||.|++||++++...  ......+.+|...|++++|+|     .+|+++
T Consensus       150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~  227 (379)
T 3jrp_A          150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRSYLASV  227 (379)
T ss_dssp             EEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred             eEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc--eeeEEEEecccCcEeEEEECCCCCCCCeEEEE
Confidence            99999999             6999999999999999999876321  235667889999999999975     489999


Q ss_pred             eCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEe--cCCEEEEecCCCeEEEEeCCc
Q 009993          381 AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GADRIVCGGEEGIVRIWNFSQ  452 (520)
Q Consensus       381 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~Dg~v~iwd~~~  452 (520)
                      +.||.|++||+++.....              .........|...+.++.+  ++.+|++++.||.|++|++..
T Consensus       228 ~~dg~i~iwd~~~~~~~~--------------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          228 SQDRTCIIWTQDNEQGPW--------------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             ETTSCEEEEEESSTTSCC--------------EEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             eCCCEEEEEeCCCCCccc--------------eeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            999999999998742110              0001112335556665555  556999999999999999874

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=1.3e-29  Score=252.71  Aligned_cols=288  Identities=11%  Similarity=0.124  Sum_probs=203.9

Q ss_pred             CCceEEEE--ecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCC------------CCeEEEEE--c
Q 009993          183 LGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE------------GPITSLAL--D  246 (520)
Q Consensus       183 ~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~l~~--~  246 (520)
                      +...|.++  ++++++|++|+.||.|++||+.++.....  ...........+.+|.            ..|.+++|  +
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS--HSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----C--CCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc--ccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence            45566655  49999999999999999999987631100  0011122456777898            88999999  4


Q ss_pred             C--CEEEEEecCCeEEEEECCCCcEE---------------------------------------EEe--eeccCEEEEe
Q 009993          247 L--TRIYSGSWDMTVRVWDRALLKCL---------------------------------------KVL--RHSDWVYGLA  283 (520)
Q Consensus       247 ~--~~l~s~s~dg~v~iwd~~~~~~~---------------------------------------~~~--~~~~~v~~~~  283 (520)
                      +  ..+++++.|++|++||+.++...                                       ..+  .|...|.++.
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence            4  68999999999999998765432                                       122  3888888887


Q ss_pred             --eCCCEEEEEcCCeEEEEECCC-CeeeEEe------ecccccceEEEEecCCC-CEEEEEeCCCeEEEEEcccCccccc
Q 009993          284 --PHDTTVASTSGSDVYIWDTNS-GCLLTVV------NGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEAN  353 (520)
Q Consensus       284 --~~~~~l~~~~d~~i~iwd~~~-~~~~~~~------~~~~~~~i~~l~~s~~~-~~l~tg~~dg~i~iwd~~~~~~~~~  353 (520)
                        +++++++++.|+.|++||+++ ++.+..+      ..+|...|++++|+|++ .+|++|+.||.|++||++++.... 
T Consensus       185 ~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~-  263 (447)
T 3dw8_B          185 INSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD-  263 (447)
T ss_dssp             ECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC-
T ss_pred             EcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc-
Confidence              889999998899999999994 4444432      23689999999999998 999999999999999999873110 


Q ss_pred             eeeeeeecCCcC------------CEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc
Q 009993          354 VLLVATWIPHTG------------PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML  419 (520)
Q Consensus       354 ~~~~~~~~~h~~------------~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (520)
                       ..+..+.+|..            .|++++|+|  .+|++++. +.|++||+++..                  .+...+
T Consensus       264 -~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~------------------~~~~~~  323 (447)
T 3dw8_B          264 -RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN------------------RPVETY  323 (447)
T ss_dssp             -TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS------------------SCSCCE
T ss_pred             -ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc------------------ccccee
Confidence             11566777775            999999976  68999998 999999998621                  111222


Q ss_pred             cCcce-----------------eeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhh--hhcccc-------------
Q 009993          420 HGFEC-----------------NLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRAR--ALRGIR-------------  467 (520)
Q Consensus       420 ~~~~~-----------------~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~--~~~~~~-------------  467 (520)
                      .+|..                 ...++++++.+|++|+.||.|++||+.++..+.-...  ..+...             
T Consensus       324 ~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (447)
T 3dw8_B          324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKR  403 (447)
T ss_dssp             ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCC
T ss_pred             eccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCc
Confidence            22321                 1256777788999999999999999998765310000  000000             


Q ss_pred             -------cchhhhhccceeeeccCCCccccccc
Q 009993          468 -------LENRMRRRKLQTEMSSKGGRTDQCSV  493 (520)
Q Consensus       468 -------~~~~~~~~~~~~~~s~~g~~~~~~s~  493 (520)
                             ..-.....+..++|+|+|..+++++.
T Consensus       404 ~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~  436 (447)
T 3dw8_B          404 KKDEISVDSLDFNKKILHTAWHPKENIIAVATT  436 (447)
T ss_dssp             CTTCEEGGGCCTTSCCCEEEECSSSSEEEEECS
T ss_pred             ccccccccccccCCceeEEEECCCCCEEEEEec
Confidence                   00122345677999999999988764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=3.9e-30  Score=252.94  Aligned_cols=256  Identities=16%  Similarity=0.185  Sum_probs=206.3

Q ss_pred             CCCCCcccHH--------HhhhhhccccccEEEEEEcc-CCCEEEEEeCCCeEEEEECCCC-------cEEEEeCCCCce
Q 009993          123 AGFSDDKSWK--------ELIDVLYGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDG-------FSIASSKPLGCT  186 (520)
Q Consensus       123 ~~~~~~~~W~--------~~~~~l~~h~~~V~~l~~~~-~~~~l~sgs~dg~v~vwd~~~~-------~~~~~~~~~~~~  186 (520)
                      +++....+|+        ..+..+.+|.+.|++++|+| ++++|++|+.||+|++||+.++       +.+..+.+|...
T Consensus        54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~  133 (402)
T 2aq5_A           54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR  133 (402)
T ss_dssp             SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSC
T ss_pred             cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCe
Confidence            3455567786        24567889999999999999 8999999999999999999988       567888899988


Q ss_pred             EEEEe--cCC-CEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEe--ccCCCCeEEEEE--cCCEEEEEecCCeE
Q 009993          187 IRAVA--ADK-KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL--WEHEGPITSLAL--DLTRIYSGSWDMTV  259 (520)
Q Consensus       187 v~~~~--~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~--~~~~l~s~s~dg~v  259 (520)
                      |.++.  +++ ++|++|+.||.|++||+.++.             ....+  .+|...|.+++|  ++++|++++.||.|
T Consensus       134 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  200 (402)
T 2aq5_A          134 VGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-------------AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRV  200 (402)
T ss_dssp             EEEEEECSSBTTEEEEEETTSCEEEEETTTTE-------------EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEE
T ss_pred             EEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-------------ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcE
Confidence            88776  776 699999999999999997753             44556  789999999999  77899999999999


Q ss_pred             EEEECCCCcEEEEe-e-eccC-EEEEe--eCCCEEEEE---c-CCeEEEEECCCCee-eEEeecccccceEEEEecCCCC
Q 009993          260 RVWDRALLKCLKVL-R-HSDW-VYGLA--PHDTTVAST---S-GSDVYIWDTNSGCL-LTVVNGAHVGNTKSLARSHTGD  329 (520)
Q Consensus       260 ~iwd~~~~~~~~~~-~-~~~~-v~~~~--~~~~~l~~~---~-d~~i~iwd~~~~~~-~~~~~~~~~~~i~~l~~s~~~~  329 (520)
                      ++||+++++.+..+ . |... +.++.  +++.+++++   + |+.|++||++++.. +......|...+.+++|+|+++
T Consensus       201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  280 (402)
T 2aq5_A          201 RVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTN  280 (402)
T ss_dssp             EEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTT
T ss_pred             EEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCC
Confidence            99999999998887 3 5543 55554  889999998   5 89999999998764 4444335788899999999999


Q ss_pred             EEE-EEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcc
Q 009993          330 FLF-TGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       330 ~l~-tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~  394 (520)
                      +|+ +|+.||.|++||+.++...  ...+..+. |..+|++++|+|+..+.++.++.+++|++.+.
T Consensus       281 ~l~~~g~~dg~i~i~d~~~~~~~--~~~l~~~~-~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~~  343 (402)
T 2aq5_A          281 IVYLCGKGDSSIRYFEITSEAPF--LHYLSMFS-SKESQRGMGYMPKRGLEVNKCEIARFYKLHER  343 (402)
T ss_dssp             EEEEEETTCSCEEEEEECSSTTC--EEEEEEEC-CSSCCSEEEECCGGGSCGGGTEEEEEEEEETT
T ss_pred             EEEEEEcCCCeEEEEEecCCCcc--eEeecccc-cCCcccceEEecccccceecceeEEEEEcCCC
Confidence            986 5567999999999987310  11223332 66899999998853333456779999999763

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=2.7e-29  Score=249.03  Aligned_cols=252  Identities=16%  Similarity=0.176  Sum_probs=206.5

Q ss_pred             hhhccccccEEEEEEccC-CCEEEEEeCCCeEEEEECCC----------CcEEEEeCCCCceEEEEe--cCCC-EEEEEe
Q 009993          136 DVLYGHTEAVLTVFVLAS-AKLLFTSGYDSIVRMWHLED----------GFSIASSKPLGCTIRAVA--ADKK-LLVAGG  201 (520)
Q Consensus       136 ~~l~~h~~~V~~l~~~~~-~~~l~sgs~dg~v~vwd~~~----------~~~~~~~~~~~~~v~~~~--~~~~-~l~sg~  201 (520)
                      ..+.+|.+.|++++|+|+ +.+|++|+.||.|++|++.+          ...+..+.+|...+.+++  +++. +|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            445789999999999997 78999999999999999986          567778888988776665  7777 999999


Q ss_pred             CCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---cCCEEEEEecCCeEEEEECCCC---cEEEEee-
Q 009993          202 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALL---KCLKVLR-  274 (520)
Q Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~v~iwd~~~~---~~~~~~~-  274 (520)
                      .||.|++||+.++...      .........+.+|...|.+++|   ++..+++++.||.|++||++++   +.+..+. 
T Consensus       202 ~dg~i~vwd~~~~~~~------~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~  275 (430)
T 2xyi_A          202 DDHTICLWDINATPKE------HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA  275 (430)
T ss_dssp             TTSCEEEEETTSCCBG------GGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred             CCCeEEEEeCCCCCCC------CceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence            9999999999774210      0011224566789999999999   4578999999999999999987   4666664 


Q ss_pred             eccCEEEEe--eCCC-EEEEEc-CCeEEEEECCC-CeeeEEeecccccceEEEEecCCCC-EEEEEeCCCeEEEEEcccC
Q 009993          275 HSDWVYGLA--PHDT-TVASTS-GSDVYIWDTNS-GCLLTVVNGAHVGNTKSLARSHTGD-FLFTGGEDGAIHMYEIIND  348 (520)
Q Consensus       275 ~~~~v~~~~--~~~~-~l~~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~i~~l~~s~~~~-~l~tg~~dg~i~iwd~~~~  348 (520)
                      |...|.++.  +++. ++++++ ||.|++||+++ +..+..+. +|...|.+++|+|++. +|++++.||.|++||+...
T Consensus       276 ~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~  354 (430)
T 2xyi_A          276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI  354 (430)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred             CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee-cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence            888999988  6565 677888 99999999998 45677776 6999999999999985 7999999999999999873


Q ss_pred             cccc--------ceeeeeeecCCcCCEEEEEecC--C-EEEEEeCCCcEEEEeCCcc
Q 009993          349 CTEA--------NVLLVATWIPHTGPVNSLAFEF--P-WLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       349 ~~~~--------~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~s~dg~i~vwd~~~~  394 (520)
                      ....        ....+..+.+|...|++++|+|  . +|++++.||.|+||++...
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             TCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             ccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            2111        1245677789999999999987  3 8999999999999999864

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-28  Score=245.55  Aligned_cols=273  Identities=10%  Similarity=0.065  Sum_probs=209.1

Q ss_pred             cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc---EEEEeCCC-----------------------------------
Q 009993          142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF---SIASSKPL-----------------------------------  183 (520)
Q Consensus       142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~---~~~~~~~~-----------------------------------  183 (520)
                      ..+|.+++|+|+|++|+++ .++.|++||+.+|+   .+..+..+                                   
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3578999999999977666 47899999999998   65555432                                   


Q ss_pred             -------------------CceEEEE--ecCCCEE-EEEeCCCcEEEEEcc--cCcceeeeccCCccccceEEe--ccCC
Q 009993          184 -------------------GCTIRAV--AADKKLL-VAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRL--WEHE  237 (520)
Q Consensus       184 -------------------~~~v~~~--~~~~~~l-~sg~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~--~~h~  237 (520)
                                         ...|.++  +|++++| ++|+.||.|++||+.  ++.             ....+  ..|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~-------------~~~~~~~~~~~  149 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN-------------VLKLRKRFCFS  149 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS-------------CEEEEEEEECS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc-------------eeeeeecccCC
Confidence                               2246655  4899986 899999999999997  442             22233  3677


Q ss_pred             CCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEE----Eee-eccCEEEEe--eC---CCEEEEEc-CCeEEEEECCC
Q 009993          238 GPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLK----VLR-HSDWVYGLA--PH---DTTVASTS-GSDVYIWDTNS  304 (520)
Q Consensus       238 ~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~----~~~-~~~~v~~~~--~~---~~~l~~~~-d~~i~iwd~~~  304 (520)
                      ..|.+++|  ++.+|++|+.||.|++|++.+++...    .+. |...|.++.  ++   +++|++++ |+.|++||+++
T Consensus       150 ~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~  229 (450)
T 2vdu_B          150 KRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ  229 (450)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence            89999999  67899999999999999998877553    444 888999887  77   88999998 99999999999


Q ss_pred             CeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec-----------------------
Q 009993          305 GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI-----------------------  361 (520)
Q Consensus       305 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~-----------------------  361 (520)
                      ++.+..+..+|...|.+++|+ ++++|++|+.|+.|++||++++.      .+..+.                       
T Consensus       230 ~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (450)
T 2vdu_B          230 CFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGK------NLSTFDYNSLIKPYLNDQHLAPPRFQNEN  302 (450)
T ss_dssp             TTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCC------EEEEEECHHHHGGGCCTTSBC--------
T ss_pred             CceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCc------Eeeeecchhhhhhhhhhcccccccccccc
Confidence            988887666799999999999 99999999999999999999883      333333                       


Q ss_pred             --CCcCCEEEEEecC--CEEEEEe-CCCcEEEEeC--CcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC
Q 009993          362 --PHTGPVNSLAFEF--PWLVSAA-GDGKLSLIDV--RKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD  434 (520)
Q Consensus       362 --~h~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  434 (520)
                        .....|.++.|.|  ++|++++ .|+.|++|++  .+..         ..       .....+.++ ..+.++.++++
T Consensus       303 ~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~---------~l-------~~~~~~~~~-~~v~~~~~~~~  365 (450)
T 2vdu_B          303 NDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKG---------DL-------ALKQIITFP-YNVISLSAHND  365 (450)
T ss_dssp             --CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTT---------CE-------EEEEEEECS-SCEEEEEEETT
T ss_pred             cccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCC---------ce-------eeccEeccC-CceEEEEecCC
Confidence              2345789999975  6888888 8999999999  3310         00       112223444 56777777776


Q ss_pred             -EEEEecC-------CCeEEEEeCCc
Q 009993          435 -RIVCGGE-------EGIVRIWNFSQ  452 (520)
Q Consensus       435 -~l~sg~~-------Dg~v~iwd~~~  452 (520)
                       .+++.+.       +..|.+|.+..
T Consensus       366 ~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          366 EFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             EEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             cEEEEEecccCCCCCCcceEEEEEEc
Confidence             4444432       55688887753

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=1.2e-28  Score=238.68  Aligned_cols=283  Identities=13%  Similarity=0.206  Sum_probs=213.6

Q ss_pred             EEECCCCcEEEEeCCCCceEEEEe--cC---CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEE
Q 009993          168 MWHLEDGFSIASSKPLGCTIRAVA--AD---KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITS  242 (520)
Q Consensus       168 vwd~~~~~~~~~~~~~~~~v~~~~--~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  242 (520)
                      .|+....+.+..+.+|...|.++.  |+   +++|++|+.||.|++||+.+..           ......+.+|...|.+
T Consensus        23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~-----------~~~~~~~~~h~~~v~~   91 (368)
T 3mmy_A           23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG-----------QTIPKAQQMHTGPVLD   91 (368)
T ss_dssp             CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS-----------CEEEEEEEECSSCEEE
T ss_pred             cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC-----------ceeEEEeccccCCEEE
Confidence            345566677888899999998887  66   5899999999999999997632           1233567789999999


Q ss_pred             EEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe----eCCCEEEEEc-CCeEEEEECCCCeeeEEeeccc
Q 009993          243 LAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA----PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAH  315 (520)
Q Consensus       243 l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~  315 (520)
                      ++|  ++++|++++.||.|++||+++++.+....|...|.++.    +++.++++++ |+.|++||+++++.+..+.  .
T Consensus        92 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~  169 (368)
T 3mmy_A           92 VCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ--L  169 (368)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE--C
T ss_pred             EEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe--c
Confidence            999  67899999999999999999999988888999999886    5677888888 9999999999999888886  3


Q ss_pred             ccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe--cCC----EEEEEeCCCcEEEE
Q 009993          316 VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFP----WLVSAAGDGKLSLI  389 (520)
Q Consensus       316 ~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~----~l~s~s~dg~i~vw  389 (520)
                      ...+.++.+.  +..+++++.++.+++|+++.....    .......+...+.++.+  ++.    .+++++.||.|++|
T Consensus       170 ~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~  243 (368)
T 3mmy_A          170 PERCYCADVI--YPMAVVATAERGLIVYQLENQPSE----FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH  243 (368)
T ss_dssp             SSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEE----EEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred             CCCceEEEec--CCeeEEEeCCCcEEEEEeccccch----hhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence            3466677665  458889999999999999876321    11111223334444444  433    49999999999999


Q ss_pred             eCCcccccCCCCCCCceeeeeecCCCcccccCcc------------eeeEEEEec--CCEEEEecCCCeEEEEeCCchHh
Q 009993          390 DVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE------------CNLLSVDIG--ADRIVCGGEEGIVRIWNFSQAFE  455 (520)
Q Consensus       390 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~~~~~  455 (520)
                      |++.....                .....+.+|.            ..+.++.++  +.+|++|+.||.|++||+.++..
T Consensus       244 ~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~  307 (368)
T 3mmy_A          244 YINPPNPA----------------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTK  307 (368)
T ss_dssp             ESSCSCHH----------------HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred             ecCCCCcc----------------ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcE
Confidence            99874210                1111222333            256666665  55999999999999999997754


Q ss_pred             HHHHhhhhcccccchhhhhccceeeeccCCCccccccccc
Q 009993          456 IERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAA  495 (520)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~~  495 (520)
                      +...          ......+..++|+|+|+.+++++.+.
T Consensus       308 ~~~~----------~~~~~~v~~~~~s~~g~~l~~~s~d~  337 (368)
T 3mmy_A          308 LKTS----------EQLDQPISACCFNHNGNIFAYASSYD  337 (368)
T ss_dssp             EEEC----------CCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred             EEEe----------cCCCCCceEEEECCCCCeEEEEeccc
Confidence            4221          12345578999999999999998754

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.1e-29  Score=240.90  Aligned_cols=270  Identities=8%  Similarity=-0.030  Sum_probs=193.5

Q ss_pred             EEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCcccc
Q 009993          149 FVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQN  228 (520)
Q Consensus       149 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~  228 (520)
                      .+.+++.+|++|+.||+|++||+.+++.+..+.  ...+.++..... +++|+.|++|++|+.... ...++....  ..
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~-~~~~~~~~~--~~  116 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQ-ITILDSKTN--KV  116 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-EEEECSTTEEEEEETTTE-EEEEETTTC--CE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-eEEecCCCeEEEEEccCc-eEEeecCCc--ce
Confidence            345678899999999999999999998887775  223333332222 999999999999987642 112222111  11


Q ss_pred             ceEEeccCCCCeEEEEE----cCCEEEEEecCCeEEEEECCCCcEEEEee--eccCEEEEe--eCCCEEEEEc-CCeEEE
Q 009993          229 TQFRLWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA--PHDTTVASTS-GSDVYI  299 (520)
Q Consensus       229 ~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~--~~~~~l~~~~-d~~i~i  299 (520)
                      ......+|.+.|.++++    +++++++++.||+|++||+++++......  +...+.++.  |++.++++|+ |+.|++
T Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i  196 (343)
T 3lrv_A          117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV  196 (343)
T ss_dssp             EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred             eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence            11223367789999999    45789999999999999999999877664  555677766  8999999988 999999


Q ss_pred             EECCCCeee-EEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEE--EEEecC--
Q 009993          300 WDTNSGCLL-TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN--SLAFEF--  374 (520)
Q Consensus       300 wd~~~~~~~-~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~--~l~~~~--  374 (520)
                      ||+++++.+ ..+..+|.++|++++|+|++.+|++++ |+.|++||+++.....   .+..+..|...+.  +++|+|  
T Consensus       197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g  272 (343)
T 3lrv_A          197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL---AYPTYTIPEFKTGTVTYDIDDSG  272 (343)
T ss_dssp             EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB---SSCCCBC-----CCEEEEECTTS
T ss_pred             EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce---eecccccccccccceEEEECCCC
Confidence            999999887 677644999999999999999999999 5599999999883221   1222222444444  699976  


Q ss_pred             CEEEEEeC-CCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEe-----cCCEEEEecCCCeEEEE
Q 009993          375 PWLVSAAG-DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI-----GADRIVCGGEEGIVRIW  448 (520)
Q Consensus       375 ~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~l~sg~~Dg~v~iw  448 (520)
                      .+|++++. |+.|++|++.+.....                     ..  ..+..+.+     +...+++++.||.++++
T Consensus       273 ~~l~~~s~~d~~i~v~~~~~~~~~~---------------------~~--~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          273 KNMIAYSNESNSLTIYKFDKKTKNW---------------------TK--DEESALCLQSDTADFTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             SEEEEEETTTTEEEEEEECTTTCSE---------------------EE--EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred             CEEEEecCCCCcEEEEEEcccccce---------------------Ee--cCceeEecCccccccceeEEEecCCceEEE
Confidence            69999998 9999999997632110                     00  22223333     33488888889988887


Q ss_pred             eCC
Q 009993          449 NFS  451 (520)
Q Consensus       449 d~~  451 (520)
                      -..
T Consensus       330 ~~~  332 (343)
T 3lrv_A          330 LKT  332 (343)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            544

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=2.3e-28  Score=242.36  Aligned_cols=261  Identities=16%  Similarity=0.236  Sum_probs=196.5

Q ss_pred             eCCCCceEEEEe--cC-CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCC-EEEEE
Q 009993          180 SKPLGCTIRAVA--AD-KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLT-RIYSG  253 (520)
Q Consensus       180 ~~~~~~~v~~~~--~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~s~  253 (520)
                      ...|...|.++.  ++ +.+|++|+.||.|++||+.+.....   ...........+.+|...|.+++|  ++. +|++|
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~---~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKP---EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSC---CTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCccccc---CccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            345666665554  75 6799999999999999997631100   000113456778899999999999  344 99999


Q ss_pred             ecCCeEEEEECCCCcE-------EEEe-eeccCEEEEe--e-CCCEEEEEc-CCeEEEEECCCC---eeeEEeecccccc
Q 009993          254 SWDMTVRVWDRALLKC-------LKVL-RHSDWVYGLA--P-HDTTVASTS-GSDVYIWDTNSG---CLLTVVNGAHVGN  318 (520)
Q Consensus       254 s~dg~v~iwd~~~~~~-------~~~~-~~~~~v~~~~--~-~~~~l~~~~-d~~i~iwd~~~~---~~~~~~~~~~~~~  318 (520)
                      +.||+|++||+.++..       ...+ .|...|.++.  + ++.++++++ |+.|++||++++   ..+..+. .|...
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~  279 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAE  279 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-CCSSC
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-cCCCC
Confidence            9999999999987322       2333 3888899988  4 677888888 999999999987   4666665 69999


Q ss_pred             eEEEEecCCCC-EEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcc
Q 009993          319 TKSLARSHTGD-FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       319 i~~l~~s~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~  394 (520)
                      |++++|+|++. ++++|+.||.|++||++...     .++..+.+|...|++++|+|   .+|++++.||.|++||+...
T Consensus       280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-----~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~  354 (430)
T 2xyi_A          280 VNCLSFNPYSEFILATGSADKTVALWDLRNLK-----LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI  354 (430)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCTT-----SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-----CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence            99999999987 78899999999999999853     46778889999999999986   47999999999999999873


Q ss_pred             cccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC---EEEEecCCCeEEEEeCCchH
Q 009993          395 LRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD---RIVCGGEEGIVRIWNFSQAF  454 (520)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~sg~~Dg~v~iwd~~~~~  454 (520)
                      ........     .............+|...+.++.++++   +|++++.||.|+||++....
T Consensus       355 ~~~~~~~~-----~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          355 GEEQSTED-----AEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             TCCCCHHH-----HHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred             ccccCccc-----cccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence            21110000     000001223345677777887777654   89999999999999998653

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=7.4e-29  Score=240.02  Aligned_cols=234  Identities=10%  Similarity=0.131  Sum_probs=181.4

Q ss_pred             hhccccccEEEEEEccCCCEEEEE-----------eCCCeEEEEECCCCcEE----EEeC-----CCC--ceEEEEecCC
Q 009993          137 VLYGHTEAVLTVFVLASAKLLFTS-----------GYDSIVRMWHLEDGFSI----ASSK-----PLG--CTIRAVAADK  194 (520)
Q Consensus       137 ~l~~h~~~V~~l~~~~~~~~l~sg-----------s~dg~v~vwd~~~~~~~----~~~~-----~~~--~~v~~~~~~~  194 (520)
                      .|.+|.+.|.+++++  ++.+++|           +.|+++++|++.+....    ....     .+.  ..+.+++|||
T Consensus        68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg  145 (365)
T 4h5i_A           68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG  145 (365)
T ss_dssp             ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred             EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence            467899999998774  5666665           45788999998765322    1111     122  3456788999


Q ss_pred             CEEEEEe--CCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEE
Q 009993          195 KLLVAGG--TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCL  270 (520)
Q Consensus       195 ~~l~sg~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~  270 (520)
                      +++++++  .|++|++||+.++.             ....+ .|.+.|.+++|  ++.++++++.| .+++|+..+++.+
T Consensus       146 ~~la~as~~~d~~i~iwd~~~~~-------------~~~~~-~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~  210 (365)
T 4h5i_A          146 TVAAIASSKVPAIMRIIDPSDLT-------------EKFEI-ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCI  210 (365)
T ss_dssp             SCEEEEESCSSCEEEEEETTTTE-------------EEEEE-ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEE
T ss_pred             CEEEEEECCCCCEEEEeECCCCc-------------EEEEe-CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcce
Confidence            9887554  78999999998763             23333 47889999999  77899998855 5677777777665


Q ss_pred             EEee---eccCEEEEe--eCCCEEEEEc-CC----eEEEEECCCCeee----EEeecccccceEEEEecCCCCEEEEEeC
Q 009993          271 KVLR---HSDWVYGLA--PHDTTVASTS-GS----DVYIWDTNSGCLL----TVVNGAHVGNTKSLARSHTGDFLFTGGE  336 (520)
Q Consensus       271 ~~~~---~~~~v~~~~--~~~~~l~~~~-d~----~i~iwd~~~~~~~----~~~~~~~~~~i~~l~~s~~~~~l~tg~~  336 (520)
                      ....   |...|.++.  |++..+++++ ++    .+++||+......    ..+. +|...|++++|+|+|++||+|+.
T Consensus       211 ~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~V~~~~~Spdg~~lasgs~  289 (365)
T 4h5i_A          211 ARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVT-NRFKGITSMDVDMKGELAVLASN  289 (365)
T ss_dssp             EEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEE-SSCSCEEEEEECTTSCEEEEEET
T ss_pred             eeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeec-CCCCCeEeEEECCCCCceEEEcC
Confidence            4432   677788776  8999999988 65    5888998776532    2333 68899999999999999999999


Q ss_pred             CCeEEEEEcccCccccceeeeee-ecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993          337 DGAIHMYEIINDCTEANVLLVAT-WIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       337 dg~i~iwd~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  394 (520)
                      |++|+|||++++      +++.+ +.+|..+|++|+|+|  ++|++||.|++|+|||+...
T Consensus       290 D~~V~iwd~~~~------~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          290 DNSIALVKLKDL------SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             TSCEEEEETTTT------EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             CCEEEEEECCCC------cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            999999999998      66766 478999999999987  69999999999999999754

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=1.2e-28  Score=236.63  Aligned_cols=273  Identities=10%  Similarity=0.082  Sum_probs=210.5

Q ss_pred             eCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCC-EEEEEe
Q 009993          180 SKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLT-RIYSGS  254 (520)
Q Consensus       180 ~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~s~s  254 (520)
                      ..+|...|.++.  +++.+|++|+.||.|++||+.++..          ......+.+|...|.+++|  +++ +|++|+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~   76 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK----------NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT   76 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT----------EEEEEEEEECSSCEEEEEEEESSSEEEEEEE
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc----------cccceeeeecCCceEEEEECCCCCcEEEEEc
Confidence            457888887765  8999999999999999999977531          1124455689999999999  678 999999


Q ss_pred             cCCeEEEEEC-CCCcEEEEee--eccCEEEEe--eCCCEEEEEc-CCeEEEEECCC---------CeeeEEeecccccce
Q 009993          255 WDMTVRVWDR-ALLKCLKVLR--HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNS---------GCLLTVVNGAHVGNT  319 (520)
Q Consensus       255 ~dg~v~iwd~-~~~~~~~~~~--~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~---------~~~~~~~~~~~~~~i  319 (520)
                      .||.|++||+ .+++......  |...|.++.  + +..+++++ |+.|++||+++         ++++..+.  |...+
T Consensus        77 ~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v  153 (342)
T 1yfq_A           77 VQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKI  153 (342)
T ss_dssp             TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCE
T ss_pred             CCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCce
Confidence            9999999999 8887765556  889999988  5 88899888 99999999987         66666654  88999


Q ss_pred             EEEEecCCCCEEEEEeCCCeEEEEEccc-CccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCccc
Q 009993          320 KSLARSHTGDFLFTGGEDGAIHMYEIIN-DCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLL  395 (520)
Q Consensus       320 ~~l~~s~~~~~l~tg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~  395 (520)
                      .+++|+|++  +++++.|+.|++||+++ ...    ........|...|.+++|+|   .++++++.||.|++|+++...
T Consensus       154 ~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~  227 (342)
T 1yfq_A          154 FTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD----NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG  227 (342)
T ss_dssp             EEEEECSSE--EEEEESTTEEEEEESSCCTTC----CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTC
T ss_pred             EEEEecCCc--EEEEeCCCeEEEEECCccccc----cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCC
Confidence            999999887  99999999999999988 521    23334557888999999976   699999999999999997641


Q ss_pred             ccCCCCCCCceeeeeecCCCcccccCc---------ceeeEEEEe--cCCEEEEecCCCeEEEEeCCchHhHHHHhhhhc
Q 009993          396 RSGRPTSGKRVSRVIEVEPPQRMLHGF---------ECNLLSVDI--GADRIVCGGEEGIVRIWNFSQAFEIERRARALR  464 (520)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~--~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~  464 (520)
                      ....             ......+.+|         ...+.++.+  ++.+|++|+.||.|++||+.++..+...     
T Consensus       228 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----  289 (342)
T 1yfq_A          228 DDYN-------------SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF-----  289 (342)
T ss_dssp             CSTT-------------CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC-----
T ss_pred             cccc-------------cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhh-----
Confidence            0000             0112222333         336666665  4569999999999999999987543321     


Q ss_pred             ccccchhh-hhccceeeeccCCCcccccccccc
Q 009993          465 GIRLENRM-RRRKLQTEMSSKGGRTDQCSVAAK  496 (520)
Q Consensus       465 ~~~~~~~~-~~~~~~~~~s~~g~~~~~~s~~~~  496 (520)
                           ... ...+..++  |+|..+++++.+..
T Consensus       290 -----~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          290 -----AKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             -----CCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             -----hcccCCCceEec--CCCCeEEEEecCCc
Confidence                 111 23456666  99999999987765

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=4.3e-28  Score=233.86  Aligned_cols=284  Identities=11%  Similarity=0.129  Sum_probs=191.2

Q ss_pred             EEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE
Q 009993          168 MWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL  245 (520)
Q Consensus       168 vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  245 (520)
                      +|++.+...+.....|...|.+++  +++++|++|+.+| +++||+.++.             .......  ..+..+.+
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~-------------~~~~~~~--~~~~~~~~   66 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVA-------------HIMSQEM--RHLSKVRM   66 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEE-------------EEEEEEC--SCCCEEEE
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcc-------------eeeeeec--CCeEEEEE
Confidence            566777777777778887776655  9999999998776 7899986542             1111111  23445555


Q ss_pred             --cCCEE-EEEecCCeEEEEECCCCcEEEEeeeccCEEEEeeCCCEEEEEcCCeEEEEECCCC-eeeEEeecccccceEE
Q 009993          246 --DLTRI-YSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSG-CLLTVVNGAHVGNTKS  321 (520)
Q Consensus       246 --~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~i~~  321 (520)
                        +++.+ ++++.|++|++||..+++++..+.+...|.++..++..++++.++.|++||+.++ +.+..+..    +...
T Consensus        67 ~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~----~~~~  142 (355)
T 3vu4_A           67 LHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR----FGGV  142 (355)
T ss_dssp             CTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE----EEEE
T ss_pred             cCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc----CCce
Confidence              66665 6788889999999999999999998899999998888888888999999999988 66666542    3445


Q ss_pred             EEecCCCCEEEE--EeCCCeEEEEEcccCccc---------cceee-eeeecCCcCCEEEEEecC--CEEEEEeCCCc-E
Q 009993          322 LARSHTGDFLFT--GGEDGAIHMYEIINDCTE---------ANVLL-VATWIPHTGPVNSLAFEF--PWLVSAAGDGK-L  386 (520)
Q Consensus       322 l~~s~~~~~l~t--g~~dg~i~iwd~~~~~~~---------~~~~~-~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~-i  386 (520)
                      +++++  .++++  |+.||.|++||+.++...         ....+ +..+.+|.+.|++++|+|  .+|++|+.||+ |
T Consensus       143 ~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v  220 (355)
T 3vu4_A          143 CEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTII  220 (355)
T ss_dssp             EEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEE
T ss_pred             EEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEE
Confidence            56666  56665  688999999999876310         00112 678899999999999976  69999999998 9


Q ss_pred             EEEeCCcccccCCCCCCCceeeeeecCCCccccc-C-cceeeEEEEecC--CEEEEecCCCeEEEEeCCchHhHHHHhhh
Q 009993          387 SLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH-G-FECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQAFEIERRARA  462 (520)
Q Consensus       387 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~--~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~  462 (520)
                      ++||++++                   .....+. + |...|.++.+++  .+|++|+.||+|++||+..+......  .
T Consensus       221 ~iwd~~~~-------------------~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~--~  279 (355)
T 3vu4_A          221 RVFKTEDG-------------------VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRH--A  279 (355)
T ss_dssp             EEEETTTC-------------------CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSE--E
T ss_pred             EEEECCCC-------------------cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccc--c
Confidence            99999874                   2223333 4 777777777655  59999999999999999865321110  0


Q ss_pred             hcc---------------cccchhhhhccceeeeccCCCcccccccc
Q 009993          463 LRG---------------IRLENRMRRRKLQTEMSSKGGRTDQCSVA  494 (520)
Q Consensus       463 ~~~---------------~~~~~~~~~~~~~~~~s~~g~~~~~~s~~  494 (520)
                      ...               .............++|++||+.+++.+.+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~d  326 (355)
T 3vu4_A          280 LKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHT  326 (355)
T ss_dssp             TTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTT
T ss_pred             ccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCC
Confidence            000               00011111123668999999999887753

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=9.3e-28  Score=254.38  Aligned_cols=247  Identities=18%  Similarity=0.197  Sum_probs=194.6

Q ss_pred             EEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--c--CCEEE
Q 009993          178 ASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D--LTRIY  251 (520)
Q Consensus       178 ~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~--~~~l~  251 (520)
                      ..+.+|...|.++.  +++++|++|+.||.|++||+.++.           ......+.+|.++|++++|  +  +++++
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-----------~~~~~~l~~h~~~V~~l~~s~~~~~~~l~   71 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----------HKLIDTLTGHEGPVWRVDWAHPKFGTILA   71 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-----------EEEEEEECCCSSCEEEEEECCTTSCSEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-----------CccceeccCCcCceEEEEecCCCCCCEEE
Confidence            45678999998887  889999999999999999987432           2355678899999999999  3  78999


Q ss_pred             EEecCCeEEEEECCCCc--EEEEee-eccCEEEEe--eC--CCEEEEEc-CCeEEEEECCCCe--eeEEeecccccceEE
Q 009993          252 SGSWDMTVRVWDRALLK--CLKVLR-HSDWVYGLA--PH--DTTVASTS-GSDVYIWDTNSGC--LLTVVNGAHVGNTKS  321 (520)
Q Consensus       252 s~s~dg~v~iwd~~~~~--~~~~~~-~~~~v~~~~--~~--~~~l~~~~-d~~i~iwd~~~~~--~~~~~~~~~~~~i~~  321 (520)
                      +|+.||+|++||+.+++  .+..+. |...|.++.  |+  +..+++++ ||.|++||++++.  ....+. +|...|.+
T Consensus        72 s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~-~~~~~v~~  150 (753)
T 3jro_A           72 SCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNS  150 (753)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE-CCSSCEEE
T ss_pred             EEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee-cCCCceEE
Confidence            99999999999999886  444444 889999988  66  88999998 9999999998873  233343 68999999


Q ss_pred             EEecC-------------CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-----CEEEEEeCC
Q 009993          322 LARSH-------------TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-----PWLVSAAGD  383 (520)
Q Consensus       322 l~~s~-------------~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~l~s~s~d  383 (520)
                      ++|+|             ++.++++|+.||.|++||++++...  ......+.+|..+|++++|+|     .+|++|+.|
T Consensus       151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~D  228 (753)
T 3jro_A          151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD  228 (753)
T ss_dssp             EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESS
T ss_pred             EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc--ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecC
Confidence            99999             5899999999999999999877322  245667889999999999975     489999999


Q ss_pred             CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEE--EEecCCEEEEecCCCeEEEEeCCc
Q 009993          384 GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLS--VDIGADRIVCGGEEGIVRIWNFSQ  452 (520)
Q Consensus       384 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~Dg~v~iwd~~~  452 (520)
                      |.|++||+++.....              ........+|...+.+  +++++.+|++|+.||.|++|++..
T Consensus       229 g~I~iwd~~~~~~~~--------------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          229 RTCIIWTQDNEQGPW--------------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             SCEEEEEESSSSSCC--------------BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             CEEEEecCCCCCCcc--------------eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            999999998752111              0111122345555554  445666999999999999999984

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3e-28  Score=234.07  Aligned_cols=250  Identities=11%  Similarity=0.042  Sum_probs=185.8

Q ss_pred             cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECC------
Q 009993          192 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRA------  265 (520)
Q Consensus       192 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~------  265 (520)
                      .++..+++|+.||.|++||+.++..             ...+.  ...|.++.+.+. +++++.|++|++|+..      
T Consensus        46 ~d~~~l~sg~~Dg~v~iwd~~~~~~-------------~~~~~--~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~  109 (343)
T 3lrv_A           46 YDKWVCMCRCEDGALHFTQLKDSKT-------------ITTIT--TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITIL  109 (343)
T ss_dssp             EEEEEEEEEEETTEEEEEEESSSSC-------------EEEEE--EECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEE
T ss_pred             CCCCEEEEECCCCcEEEEECCCCcE-------------EEEEe--cCCceeeeeCCc-eEEecCCCeEEEEEccCceEEe
Confidence            6788999999999999999987642             22222  355666777666 9999999999999665      


Q ss_pred             ---CCcEEEEee--eccCEEEEe--e--CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEe
Q 009993          266 ---LLKCLKVLR--HSDWVYGLA--P--HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG  335 (520)
Q Consensus       266 ---~~~~~~~~~--~~~~v~~~~--~--~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~  335 (520)
                         +++.+..+.  |...|.++.  +  +++++++++ |+.|++||+++++........|...+++++|+|++.+|++|+
T Consensus       110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~  189 (343)
T 3lrv_A          110 DSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYS  189 (343)
T ss_dssp             ETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEEC
T ss_pred             ecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEc
Confidence               555555554  667899988  7  889999988 999999999999987776555677899999999999999999


Q ss_pred             CCCeEEEEEcccCccccceeee-eeecC-CcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeee
Q 009993          336 EDGAIHMYEIINDCTEANVLLV-ATWIP-HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE  411 (520)
Q Consensus       336 ~dg~i~iwd~~~~~~~~~~~~~-~~~~~-h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  411 (520)
                      .||.|++||++++      ..+ ..+.. |.++|++++|+|  .+|++++ |+.|++||+++.........         
T Consensus       190 ~dg~i~iwd~~~~------~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~---------  253 (343)
T 3lrv_A          190 PDGILDVYNLSSP------DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT---------  253 (343)
T ss_dssp             TTSCEEEEESSCT------TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC---------
T ss_pred             CCCEEEEEECCCC------CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc---------
Confidence            9999999999988      444 56677 999999999976  5899999 55999999998533211110         


Q ss_pred             cCCCcccccCcce----eeEEEEecCCEEEEecC-CCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeecc---
Q 009993          412 VEPPQRMLHGFEC----NLLSVDIGADRIVCGGE-EGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSS---  483 (520)
Q Consensus       412 ~~~~~~~~~~~~~----~v~~~~~~~~~l~sg~~-Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---  483 (520)
                             +..|..    ...++++++.+|++++. |+.|++|++........              ......+.|++   
T Consensus       254 -------~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~--------------~~~~~~~~~~~~~~  312 (343)
T 3lrv_A          254 -------YTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT--------------KDEESALCLQSDTA  312 (343)
T ss_dssp             -------CBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEE--------------EEEEEECCC----C
T ss_pred             -------cccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceE--------------ecCceeEecCcccc
Confidence                   001111    34667777789999888 99999999976532110              02345677777   


Q ss_pred             CCCcccccccc
Q 009993          484 KGGRTDQCSVA  494 (520)
Q Consensus       484 ~g~~~~~~s~~  494 (520)
                      ++..+++++.+
T Consensus       313 ~~~~l~~~~~d  323 (343)
T 3lrv_A          313 DFTDMDVVCGD  323 (343)
T ss_dssp             CCCEEEEEEET
T ss_pred             ccceeEEEecC
Confidence            77777766654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=8.9e-27  Score=231.29  Aligned_cols=272  Identities=13%  Similarity=0.114  Sum_probs=211.2

Q ss_pred             hccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEE-----EeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009993          138 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA-----SSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR  210 (520)
Q Consensus       138 l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~-----~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd  210 (520)
                      +..+ ..+.+++|+|++.++++++.|+.|++||+.+++.+.     .+.+|...+.++.  +++.++++++.|+.|++||
T Consensus       119 ~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d  197 (433)
T 3bws_A          119 FKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFD  197 (433)
T ss_dssp             EECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEE
T ss_pred             EcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEE
Confidence            4444 345699999988888888889999999999998887     3446777776665  7899999999999999999


Q ss_pred             cccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEE-EEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eC
Q 009993          211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIY-SGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PH  285 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~  285 (520)
                      +.++.             ....+..|...+.+++|  +++.++ +++.|+.|++||+++++.+..+.....+.++.  ++
T Consensus       198 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  264 (433)
T 3bws_A          198 LKTLA-------------YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKD  264 (433)
T ss_dssp             TTTCC-------------EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTT
T ss_pred             CCCce-------------EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCC
Confidence            87653             44556688999999999  566664 55589999999999999988887666677776  78


Q ss_pred             CCEEEEEc---------CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEE-EEEeCCCeEEEEEcccCcccccee
Q 009993          286 DTTVASTS---------GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFL-FTGGEDGAIHMYEIINDCTEANVL  355 (520)
Q Consensus       286 ~~~l~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l-~tg~~dg~i~iwd~~~~~~~~~~~  355 (520)
                      ++.+++++         |+.|++||+.+++.+..+.  |...+.+++|+|+++.+ ++++.|+.|++||+.++      .
T Consensus       265 g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~------~  336 (433)
T 3bws_A          265 GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG--PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK------K  336 (433)
T ss_dssp             SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE--EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT------E
T ss_pred             CCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc--CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC------c
Confidence            88888776         5789999999998877763  67789999999999754 66789999999999987      4


Q ss_pred             eeeeecCCcCCEEEEEecC--CEEEEEeC---------------CCcEEEEeCCcccccCCCCCCCceeeeeecCCCccc
Q 009993          356 LVATWIPHTGPVNSLAFEF--PWLVSAAG---------------DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRM  418 (520)
Q Consensus       356 ~~~~~~~h~~~v~~l~~~~--~~l~s~s~---------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (520)
                      .+..+. +...+.+++|+|  ++|++++.               ||.|++||+.++...                   ..
T Consensus       337 ~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~-------------------~~  396 (433)
T 3bws_A          337 VQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK-------------------EF  396 (433)
T ss_dssp             EEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE-------------------EE
T ss_pred             EEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE-------------------EE
Confidence            455543 667899999976  57877776               579999999874221                   11


Q ss_pred             cc-CcceeeEEEEecCCEEEEec-CCCeEEEEeCC
Q 009993          419 LH-GFECNLLSVDIGADRIVCGG-EEGIVRIWNFS  451 (520)
Q Consensus       419 ~~-~~~~~v~~~~~~~~~l~sg~-~Dg~v~iwd~~  451 (520)
                      +. +......++++++++|++++ .|+.|++|+++
T Consensus       397 ~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          397 WEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EECSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             ecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            11 12233445556667777766 59999999986

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=8.3e-27  Score=215.17  Aligned_cols=272  Identities=13%  Similarity=0.081  Sum_probs=180.1

Q ss_pred             cEEEEEEccCCC---EEEEEeCCCeEEEEECCCC---cEEEEeCCCCceEEEEecCC--C-EEEEEeCCCcEE-EEEccc
Q 009993          144 AVLTVFVLASAK---LLFTSGYDSIVRMWHLEDG---FSIASSKPLGCTIRAVAADK--K-LLVAGGTDGFIH-CWRAVE  213 (520)
Q Consensus       144 ~V~~l~~~~~~~---~l~sgs~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~--~-~l~sg~~dg~i~-vwd~~~  213 (520)
                      .+.++.|-..|-   .+++++ ...|++|+..++   +.+.++..|..+|..+.+..  . ++.++-.+=.+. ++-+.-
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~  119 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC  119 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred             EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence            455666644332   566666 567999999998   88999999999998887332  2 222221111111 111100


Q ss_pred             CcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEe---cCCeEEEEEC-CCCcEEEEee-ecc--CEEEEee--
Q 009993          214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS---WDMTVRVWDR-ALLKCLKVLR-HSD--WVYGLAP--  284 (520)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s---~dg~v~iwd~-~~~~~~~~~~-~~~--~v~~~~~--  284 (520)
                      .      .. ...........+|...|..+  ....++..+   .|+.|++|++ .+++.+..+. |..  .+.++++  
T Consensus       120 s------pd-~~~~~~~l~s~g~~~~v~~l--~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~  190 (356)
T 2w18_A          120 S------SD-DESEKQVLLKSGNIKAVLGL--TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ  190 (356)
T ss_dssp             -------------CCEEEEEEEEEEEEEEE--TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEE
T ss_pred             C------CC-ccccccEEEeCCCeEEEEec--CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccC
Confidence            0      00 00001111123344444443  445555554   5999999999 4577777665 444  4555666  


Q ss_pred             -CCCEEEEEc-CCeEEEEECCCCeeeEEeeccc--ccceEEEEecCCCCEE------------EEEeCCCeEEEEEcccC
Q 009993          285 -HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAH--VGNTKSLARSHTGDFL------------FTGGEDGAIHMYEIIND  348 (520)
Q Consensus       285 -~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~--~~~i~~l~~s~~~~~l------------~tg~~dg~i~iwd~~~~  348 (520)
                       ++.+|++++ |++|+|||+++++++.++..+|  ...+.+++|+|+|.++            ++|+.|++|++||..++
T Consensus       191 g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg  270 (356)
T 2w18_A          191 GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT  270 (356)
T ss_dssp             TSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT
T ss_pred             CCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC
Confidence             779999999 9999999999999999997432  3467888999999876            56888999999999988


Q ss_pred             ccccceeeeeee-----cCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcc
Q 009993          349 CTEANVLLVATW-----IPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE  423 (520)
Q Consensus       349 ~~~~~~~~~~~~-----~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (520)
                            ..+..+     .+|...+.+..+++..+++|+.|++|+|||+.++                   .....+.+|.
T Consensus       271 ------k~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tG-------------------k~l~tL~gH~  325 (356)
T 2w18_A          271 ------LSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLG-------------------QCTALLPPVS  325 (356)
T ss_dssp             ------EEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTC-------------------SEEEEECCC-
T ss_pred             ------EEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCC-------------------cEEEEecCCC
Confidence                  444443     4777777777778889999999999999999984                   3344455665


Q ss_pred             ee---eEEEEecCCEEEEecCCCeEEEEeC
Q 009993          424 CN---LLSVDIGADRIVCGGEEGIVRIWNF  450 (520)
Q Consensus       424 ~~---v~~~~~~~~~l~sg~~Dg~v~iwd~  450 (520)
                      ..   ..+++|++.+|++|+.|++|+|||+
T Consensus       326 ~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          326 DQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             -CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            43   2457777779999999999999996

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=3.8e-26  Score=223.53  Aligned_cols=325  Identities=12%  Similarity=0.073  Sum_probs=229.6

Q ss_pred             CCcccHH----HhhhhhccccccEEEEEEccCCCEE-EEEeCCCeEEEEECCCCcEEEEeCCCCceEE--EEecCCCEEE
Q 009993          126 SDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLL-FTSGYDSIVRMWHLEDGFSIASSKPLGCTIR--AVAADKKLLV  198 (520)
Q Consensus       126 ~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l-~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~l~  198 (520)
                      ...+.|+    +++..+.+|. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.  ++++++++|+
T Consensus        12 ~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~   89 (391)
T 1l0q_A           12 DNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVY   89 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEE
T ss_pred             CEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEE
Confidence            3446665    3455666665 48999999999976 677799999999999999988887554 444  4558999775


Q ss_pred             E-EeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEE-EEEecCCeEEEEECCCCcEEEEee
Q 009993          199 A-GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRI-YSGSWDMTVRVWDRALLKCLKVLR  274 (520)
Q Consensus       199 s-g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~  274 (520)
                      + ++.++.|++||+.++.             ....+. +...+.+++|  +++.+ ++++.|+.|++||+.+++.+..+.
T Consensus        90 ~~~~~~~~v~v~d~~~~~-------------~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  155 (391)
T 1l0q_A           90 VTNMASSTLSVIDTTSNT-------------VAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS  155 (391)
T ss_dssp             EEETTTTEEEEEETTTTE-------------EEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCEEEEEECCCCe-------------EEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe
Confidence            4 5567999999998763             222333 4457899999  56666 788889999999999999988888


Q ss_pred             eccCEEEEe--eCCCEE-EEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEe---CCCeEEEEEccc
Q 009993          275 HSDWVYGLA--PHDTTV-ASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG---EDGAIHMYEIIN  347 (520)
Q Consensus       275 ~~~~v~~~~--~~~~~l-~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~---~dg~i~iwd~~~  347 (520)
                      ....+.++.  ++++.+ +++. ++.|++||+++++....+.  +...+.+++|+|+++++++++   .++.|++||+.+
T Consensus       156 ~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~  233 (391)
T 1l0q_A          156 VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK--VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT  233 (391)
T ss_dssp             CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred             cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC
Confidence            666667665  788877 4555 7999999999998887775  567889999999999999888   689999999998


Q ss_pred             CccccceeeeeeecCCcCCEEEEEecC--CEE-EEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc-cCcc
Q 009993          348 DCTEANVLLVATWIPHTGPVNSLAFEF--PWL-VSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML-HGFE  423 (520)
Q Consensus       348 ~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  423 (520)
                      +      ..+..+..|. .+.+++|+|  ++| ++++.|+.|++||+.++........+.....   ........ .++.
T Consensus       234 ~------~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  303 (391)
T 1l0q_A          234 N------KITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYA---SGQFIGSIPVQPV  303 (391)
T ss_dssp             T------EEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEC---CSSCEEECSSCCC
T ss_pred             C------eEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCc---cceeeeccccccc
Confidence            8      5566666655 578999976  456 6778899999999987543322211111000   00000000 0111


Q ss_pred             eeeEEEEec--------C--CEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccccccc
Q 009993          424 CNLLSVDIG--------A--DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSV  493 (520)
Q Consensus       424 ~~v~~~~~~--------~--~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~  493 (520)
                      ..+..+..+        .  -.+...+.|..+++|++.++...                ........|+++|.+.++..+
T Consensus       304 ~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~----------------~~~~~~~~~~~~g~y~~~~~~  367 (391)
T 1l0q_A          304 YPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS----------------KKQNPTHTYSETGIYTVRLTV  367 (391)
T ss_dssp             CCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE----------------CSSSCEECCSSCEEEEEEEEE
T ss_pred             ccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc----------------CcCCCeEEeCCCceEEEEEEE
Confidence            112222222        1  25677778999999999876421                011245689999998888665


Q ss_pred             c
Q 009993          494 A  494 (520)
Q Consensus       494 ~  494 (520)
                      .
T Consensus       368 ~  368 (391)
T 1l0q_A          368 S  368 (391)
T ss_dssp             E
T ss_pred             E
Confidence            4

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1.2e-27  Score=234.16  Aligned_cols=225  Identities=10%  Similarity=0.013  Sum_probs=154.0

Q ss_pred             cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE----------cCCEEEEEecCCeEEE
Q 009993          192 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----------DLTRIYSGSWDMTVRV  261 (520)
Q Consensus       192 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----------~~~~l~s~s~dg~v~i  261 (520)
                      +++.+|++|+.|++|++||..++....        ......+.+|.+.|++++|          ++++|++|+.|++|++
T Consensus        99 ~~~~~las~~~d~~v~lw~~~~~~~~~--------~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~  170 (393)
T 4gq1_A           99 VYSLFLACVCQDNTVRLIITKNETIIT--------QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLII  170 (393)
T ss_dssp             EEEEEEEEEETTSCEEEEEEETTEEEE--------EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEE
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCccce--------eeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEE
Confidence            556789999999999999998764211        1122346789999999999          4578999999999999


Q ss_pred             EECCCCcEEEEe-eeccCEEEEe--eCC-CEEEEEc-CCeEEEEECCCCeeeEEee------------------------
Q 009993          262 WDRALLKCLKVL-RHSDWVYGLA--PHD-TTVASTS-GSDVYIWDTNSGCLLTVVN------------------------  312 (520)
Q Consensus       262 wd~~~~~~~~~~-~~~~~v~~~~--~~~-~~l~~~~-d~~i~iwd~~~~~~~~~~~------------------------  312 (520)
                      ||++++.++..+ .|...|.+++  |++ .+|++++ |++|++||+++++......                        
T Consensus       171 Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  250 (393)
T 4gq1_A          171 WRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS  250 (393)
T ss_dssp             EEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred             EECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec
Confidence            999887665554 5889999988  555 4788888 9999999999876533221                        


Q ss_pred             cccccceEEEEec-CCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEE------------------ec
Q 009993          313 GAHVGNTKSLARS-HTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLA------------------FE  373 (520)
Q Consensus       313 ~~~~~~i~~l~~s-~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~------------------~~  373 (520)
                      .+|...+.++.|+ |++..+++++.|+++++||+..+.      ....+..|...+..+.                  |.
T Consensus       251 ~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (393)
T 4gq1_A          251 SGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN------DYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH  324 (393)
T ss_dssp             -CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred             ccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC------CCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence            2466778888886 799999999999999999998773      3333333333333222                  22


Q ss_pred             C----CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEec--CCEEEEecCCCeEEE
Q 009993          374 F----PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVRI  447 (520)
Q Consensus       374 ~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~v~i  447 (520)
                      +    .++++|+.||.|++||+.++                   .......+|...|.+++|+  +++||+++.|| +.+
T Consensus       325 ~~~~~~~~~sgs~Dg~V~lwd~~~~-------------------~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~l  384 (393)
T 4gq1_A          325 PRYMDYFATAHSQHGLIQLINTYEK-------------------DSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLL  384 (393)
T ss_dssp             SSCTTEEEEEETTTTEEEEEETTCT-------------------TCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEE
T ss_pred             cCCCCEEEEEECCCCEEEEEECCCC-------------------cEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEE
Confidence            1    26778889999999999874                   2223334555667666654  55999999877 555


Q ss_pred             EeC
Q 009993          448 WNF  450 (520)
Q Consensus       448 wd~  450 (520)
                      |.+
T Consensus       385 vrL  387 (393)
T 4gq1_A          385 TRL  387 (393)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=7.8e-28  Score=236.28  Aligned_cols=249  Identities=8%  Similarity=-0.029  Sum_probs=186.2

Q ss_pred             hhhhhhhcCCCCCCCCCCCCCCCcccHH-Hhhhhhc-cccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC
Q 009993          105 KEFYCERWGLPIASAPLGAGFSDDKSWK-ELIDVLY-GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP  182 (520)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~-~~~~~l~-~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~  182 (520)
                      +.+++..|. |++      .......|. +....+. +|.+.|++++|+|+|.+||+++.||+|++||.++  .+..+. 
T Consensus        53 ~~v~~V~Fs-Pdg------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-  122 (588)
T 2j04_A           53 KNLFHVKEF-PLE------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-  122 (588)
T ss_dssp             GGTEEEEEE-CCC------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-
T ss_pred             ccEEEEEEC-CCC------CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-
Confidence            456677775 443      222223443 2222333 6689999999999999999999999999999654  666666 


Q ss_pred             CCc-----eEEE--EecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEe----ccCCCCeEEEEEcCCEEE
Q 009993          183 LGC-----TIRA--VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL----WEHEGPITSLALDLTRIY  251 (520)
Q Consensus       183 ~~~-----~v~~--~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~~~~l~  251 (520)
                      |..     .+.+  ++|+|++|++|+.||+|++||+.++...      .........+    .+|...|.+++|.++-++
T Consensus       123 ~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~------~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLa  196 (588)
T 2j04_A          123 SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSEN------TPEFYFESSIRLSDAGSKDWVTHIVWYEDVLV  196 (588)
T ss_dssp             CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTT------CCCCEEEEEEECSCTTCCCCEEEEEEETTEEE
T ss_pred             CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccc------cccceeeeeeecccccccccEEEEEEcCCcEE
Confidence            553     3554  5599999999999999999999775210      0000023444    678899999999443399


Q ss_pred             EEecCCeEEEEECCCCcE---EEEee--eccCEEEEeeCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEe--
Q 009993          252 SGSWDMTVRVWDRALLKC---LKVLR--HSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLAR--  324 (520)
Q Consensus       252 s~s~dg~v~iwd~~~~~~---~~~~~--~~~~v~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~--  324 (520)
                      +++.|++|++||+.++..   ..++.  |...|.+++..++.++++++++|++||+.+++...... +|...+..++|  
T Consensus       197 ass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~~~tIkLWd~~~~~~~~~~~-gh~~~V~~va~~~  275 (588)
T 2j04_A          197 AALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTCPGYVHKIDLKNYSISSLKT-GSLENFHIIPLNH  275 (588)
T ss_dssp             EEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEECSSEEEEEETTTTEEEEEEC-SCCSCCCEEEETT
T ss_pred             EEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEeCCeEEEEECCCCeEEEEEc-CCCceEEEEEeee
Confidence            999999999999988773   34553  67889888865889999999999999999888744443 69999999999  


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCc
Q 009993          325 SHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       325 s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~  393 (520)
                      +|++..++++++||+ ++|...                      .++++|+..++++.|+++++|+...
T Consensus       276 s~d~~~La~a~edG~-klw~~d----------------------~~~~spd~~l~a~~d~~v~lW~~~g  321 (588)
T 2j04_A          276 EKESTILLMSNKTSY-KVLLED----------------------ELHVTADNIIAPYLEKKFKKWSTIW  321 (588)
T ss_dssp             CSSCEEEEECSSCEE-EEEESS----------------------SEEEECCCSSHHHHHHHHHHTTTTT
T ss_pred             CCCCCEEEEEcCCCC-EEEeec----------------------cEEECCCceEEEEcCCEEEEEECCC
Confidence            999999999999999 999965                      1446665444444599999998754

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=4.5e-25  Score=215.89  Aligned_cols=260  Identities=11%  Similarity=0.055  Sum_probs=198.7

Q ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEeCCCCce-EEEEecCCCEE-EEEeCCCcEEEEEcccCcceeeeccCCccccceEE
Q 009993          155 KLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT-IRAVAADKKLL-VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR  232 (520)
Q Consensus       155 ~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  232 (520)
                      .++++++.|+.|++||+.+++.+..+..|... ..+++++++.+ ++++.|+.|++||+.++.             ....
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~-------------~~~~   69 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN-------------VIAT   69 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE-------------EEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCe-------------EEEE
Confidence            46888999999999999999999888877542 33455899876 677799999999997763             2333


Q ss_pred             eccCCCCeEEEEE--cCCEEE-EEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEE-EEEc-CCeEEEEECCCC
Q 009993          233 LWEHEGPITSLAL--DLTRIY-SGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTV-ASTS-GSDVYIWDTNSG  305 (520)
Q Consensus       233 ~~~h~~~v~~l~~--~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l-~~~~-d~~i~iwd~~~~  305 (520)
                      +..+ ..+.+++|  ++++++ +++.|+.|++||+.+++.+..+.+...+.++.  ++++.+ ++++ ++.|++||+.++
T Consensus        70 ~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~  148 (391)
T 1l0q_A           70 VPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK  148 (391)
T ss_dssp             EECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             EECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            3333 48999999  567765 55567999999999999998888777777776  788877 5666 899999999999


Q ss_pred             eeeEEeecccccceEEEEecCCCCEE-EEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEe-
Q 009993          306 CLLTVVNGAHVGNTKSLARSHTGDFL-FTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAA-  381 (520)
Q Consensus       306 ~~~~~~~~~~~~~i~~l~~s~~~~~l-~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s-  381 (520)
                      +.+..+.  ....+.+++|+|+++.+ ++++.|+.|++||++++      .....+. +...+.+++|+|  ++|++++ 
T Consensus       149 ~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~------~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~  219 (391)
T 1l0q_A          149 AVINTVS--VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN------SVIDTVK-VEAAPSGIAVNPEGTKAYVTNV  219 (391)
T ss_dssp             EEEEEEE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT------EEEEEEE-CSSEEEEEEECTTSSEEEEEEE
T ss_pred             cEEEEEe--cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC------eEEEEEe-cCCCccceEECCCCCEEEEEec
Confidence            9888876  34567999999999987 57788999999999988      4444443 456789999976  5777777 


Q ss_pred             --CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcc-eeeEEEEecCCEE-EEecCCCeEEEEeCCchHhH
Q 009993          382 --GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE-CNLLSVDIGADRI-VCGGEEGIVRIWNFSQAFEI  456 (520)
Q Consensus       382 --~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~l-~sg~~Dg~v~iwd~~~~~~~  456 (520)
                        .++.|++||+.++...                   ..+..+. ....++++++++| ++++.|+.|++||+.+++.+
T Consensus       220 ~~~~~~v~~~d~~~~~~~-------------------~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~  279 (391)
T 1l0q_A          220 DKYFNTVSMIDTGTNKIT-------------------ARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTIT  279 (391)
T ss_dssp             CSSCCEEEEEETTTTEEE-------------------EEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CcCCCcEEEEECCCCeEE-------------------EEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEE
Confidence              7899999999874211                   1112222 2234555666655 78899999999999987554

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.3e-25  Score=224.05  Aligned_cols=244  Identities=14%  Similarity=0.093  Sum_probs=194.4

Q ss_pred             hhccccccEEEEEEccCCCEE-EEEeCCCeEEEEECC--CCcEEEEeC--CCCceEEEE--ecCCCEEEEEeCCCcEEEE
Q 009993          137 VLYGHTEAVLTVFVLASAKLL-FTSGYDSIVRMWHLE--DGFSIASSK--PLGCTIRAV--AADKKLLVAGGTDGFIHCW  209 (520)
Q Consensus       137 ~l~~h~~~V~~l~~~~~~~~l-~sgs~dg~v~vwd~~--~~~~~~~~~--~~~~~v~~~--~~~~~~l~sg~~dg~i~vw  209 (520)
                      ...+|.+.|++++|+|++++| ++|+.||.|++||+.  +++.+..+.  .|...|.++  +|++.+|++|+.||.|++|
T Consensus        97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~  176 (450)
T 2vdu_B           97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI  176 (450)
T ss_dssp             ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence            456889999999999999996 899999999999999  888887775  455666555  5899999999999999999


Q ss_pred             EcccCcceeeeccCCccccceEEeccCCCCeEEEEE--c---CCEEEEEecCCeEEEEECCCCcEEEEe--eeccCEEEE
Q 009993          210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D---LTRIYSGSWDMTVRVWDRALLKCLKVL--RHSDWVYGL  282 (520)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~---~~~l~s~s~dg~v~iwd~~~~~~~~~~--~~~~~v~~~  282 (520)
                      ++.++...         ......+.+|...|.+++|  +   +.+|++|+.|++|++||+++++.+..+  .|...|.++
T Consensus       177 ~~~~~~~~---------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~  247 (450)
T 2vdu_B          177 DINSIPEE---------KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSI  247 (450)
T ss_dssp             ETTSCCCS---------SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEE
T ss_pred             ecCCcccc---------cccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEE
Confidence            98765311         0022345679999999999  5   569999999999999999999888774  388999988


Q ss_pred             ee-CCCEEEEEc-CCeEEEEECCCCeeeEEeecc------------------------cccceEEEEecCCCCEEEEEe-
Q 009993          283 AP-HDTTVASTS-GSDVYIWDTNSGCLLTVVNGA------------------------HVGNTKSLARSHTGDFLFTGG-  335 (520)
Q Consensus       283 ~~-~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~------------------------~~~~i~~l~~s~~~~~l~tg~-  335 (520)
                      .. ++.+|++++ |+.|++||+++++.+..+...                        ....|.+++|+|++++|++++ 
T Consensus       248 ~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~  327 (450)
T 2vdu_B          248 CCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVE  327 (450)
T ss_dssp             EECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEET
T ss_pred             EECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEEC
Confidence            75 789999999 999999999999988877521                        235689999999999999998 


Q ss_pred             CCCeEEEEEc--ccCccccceeeeeeecCCcCCEEEEEecCC-EEEEEeC-------CCcEEEEeCCc
Q 009993          336 EDGAIHMYEI--INDCTEANVLLVATWIPHTGPVNSLAFEFP-WLVSAAG-------DGKLSLIDVRK  393 (520)
Q Consensus       336 ~dg~i~iwd~--~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~-------dg~i~vwd~~~  393 (520)
                      .|+.|++|++  ...   .....+..+..| +.|.+++|+|+ .+++.+.       +..|.+|.+..
T Consensus       328 ~d~~i~iw~~~~~~~---~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          328 ATKCIIILEMSEKQK---GDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             TCSEEEEEEECSSST---TCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             CCCeEEEEEeccCCC---CceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence            8999999999  333   122456667777 89999999886 4444332       45588887754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.95  E-value=5.7e-27  Score=224.91  Aligned_cols=242  Identities=16%  Similarity=0.205  Sum_probs=188.2

Q ss_pred             hhhhhhhcCCCCCCCCC-CCCCCCcccHH--------HhhhhhccccccEEEEEEcc--CCCEEEEEeCCCeEEEEECCC
Q 009993          105 KEFYCERWGLPIASAPL-GAGFSDDKSWK--------ELIDVLYGHTEAVLTVFVLA--SAKLLFTSGYDSIVRMWHLED  173 (520)
Q Consensus       105 ~~~~~~~~~~~~~~~~~-~~~~~~~~~W~--------~~~~~l~~h~~~V~~l~~~~--~~~~l~sgs~dg~v~vwd~~~  173 (520)
                      ..+.|..|. |+...+. .+.+...++|+        ++...+.+|.+.|++++|+|  ++++|++|+.||.|++||+.+
T Consensus        12 ~~v~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~   90 (351)
T 3f3f_A           12 DLVHDVVYD-FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDP   90 (351)
T ss_dssp             SCEEEEEEC-SSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECT
T ss_pred             cceeEEEEc-CCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCC
Confidence            345677777 4444333 33345568897        25667789999999999999  699999999999999999988


Q ss_pred             C---------cEEEEeCCCCceEEEEe--cC--CCEEEEEeCCCcEEEEEcccCccee-eeccCCccccceEEeccCCCC
Q 009993          174 G---------FSIASSKPLGCTIRAVA--AD--KKLLVAGGTDGFIHCWRAVEVLPHL-FDISGSEKQNTQFRLWEHEGP  239 (520)
Q Consensus       174 ~---------~~~~~~~~~~~~v~~~~--~~--~~~l~sg~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~h~~~  239 (520)
                      +         +.+..+..|...|.++.  ++  +.++++++.||.|++||+.++.... +... ...........+|...
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  169 (351)
T 3f3f_A           91 DQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT-SEMKVLSIPPANHLQS  169 (351)
T ss_dssp             TSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE-EEEESCSCCCSSCSCC
T ss_pred             CcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc-ccccccccccCCcccc
Confidence            7         56778889998888776  77  8999999999999999998764211 0000 0000011112368889


Q ss_pred             eEEEEE--c---CCEEEEEecCCeEEEEECCCCcE--EEEee-eccCEEEEe--eCC----CEEEEEc-CCeEEEEECCC
Q 009993          240 ITSLAL--D---LTRIYSGSWDMTVRVWDRALLKC--LKVLR-HSDWVYGLA--PHD----TTVASTS-GSDVYIWDTNS  304 (520)
Q Consensus       240 v~~l~~--~---~~~l~s~s~dg~v~iwd~~~~~~--~~~~~-~~~~v~~~~--~~~----~~l~~~~-d~~i~iwd~~~  304 (520)
                      +.+++|  +   +..+++++.|+.+.+|+...++.  +..+. |...|.++.  +++    +++++++ |+.|++||+++
T Consensus       170 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~  249 (351)
T 3f3f_A          170 DFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE  249 (351)
T ss_dssp             CEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred             eeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence            999999  3   78999999999998888887765  44444 888999988  666    6888888 99999999987


Q ss_pred             C----------------------------------------------eeeEEeecccccceEEEEecCCCCEEEEEeCCC
Q 009993          305 G----------------------------------------------CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG  338 (520)
Q Consensus       305 ~----------------------------------------------~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg  338 (520)
                      +                                              +.+..+. +|...|++++|+|++++|++|+.||
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg  328 (351)
T 3f3f_A          250 KLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD-DHNGEVWSVSWNLTGTILSSAGDDG  328 (351)
T ss_dssp             CC---------------------------------------CCSEEEEEEEEEC-TTSSCEEEEEECSSSCCEEEEETTS
T ss_pred             CcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe-cccccEEEEEEcCCCCEEEEecCCC
Confidence            5                                              4455554 6999999999999999999999999


Q ss_pred             eEEEEEcccCc
Q 009993          339 AIHMYEIINDC  349 (520)
Q Consensus       339 ~i~iwd~~~~~  349 (520)
                      .|++||+.++.
T Consensus       329 ~v~iw~~~~~~  339 (351)
T 3f3f_A          329 KVRLWKATYSN  339 (351)
T ss_dssp             CEEEEEECTTS
T ss_pred             cEEEEecCcCc
Confidence            99999999873

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=6.8e-27  Score=228.78  Aligned_cols=234  Identities=11%  Similarity=0.078  Sum_probs=162.0

Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEE-----EEeCCCCceEEEEe--c--------CCCEEEEEeCC
Q 009993          139 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI-----ASSKPLGCTIRAVA--A--------DKKLLVAGGTD  203 (520)
Q Consensus       139 ~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~-----~~~~~~~~~v~~~~--~--------~~~~l~sg~~d  203 (520)
                      ..|...+....+.+++.+|++|+.|++|+|||+.++...     ..+.+|...|.+++  |        ++++|++|+.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D  165 (393)
T 4gq1_A           86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD  165 (393)
T ss_dssp             C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred             cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence            445555666666677889999999999999999988653     34678999998876  4        78899999999


Q ss_pred             CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC---CEEEEEecCCeEEEEECCCCcEEEEee------
Q 009993          204 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL---TRIYSGSWDMTVRVWDRALLKCLKVLR------  274 (520)
Q Consensus       204 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~v~iwd~~~~~~~~~~~------  274 (520)
                      ++|++||+.++.             ....+.+|...|.+++|.+   .+|++|+.|++|++||+++++......      
T Consensus       166 ~tv~~Wd~~~~~-------------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~  232 (393)
T 4gq1_A          166 CTLIIWRLTDEG-------------PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVK  232 (393)
T ss_dssp             SEEEEEEEETTE-------------EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CS
T ss_pred             CeEEEEECCCCc-------------eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcc
Confidence            999999997652             4556678999999999943   479999999999999998876543321      


Q ss_pred             --------------------eccCEEEEe---eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEec-----
Q 009993          275 --------------------HSDWVYGLA---PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARS-----  325 (520)
Q Consensus       275 --------------------~~~~v~~~~---~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s-----  325 (520)
                                          |...+.++.   +++..+++++ |+++++||+..++....+. .|...+..+.+.     
T Consensus       233 ~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~-~~~~~~~~~~~~~~~~~  311 (393)
T 4gq1_A          233 NPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEIS-DSTMKLGPKNLLPNVQG  311 (393)
T ss_dssp             CCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEE
T ss_pred             cceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEe-eecCccccEEEcccccc
Confidence                                334455554   6889999999 9999999999887666554 344444433333     


Q ss_pred             -------------C--CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEE
Q 009993          326 -------------H--TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSL  388 (520)
Q Consensus       326 -------------~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~v  388 (520)
                                   |  ++.++++|+.||.|++||+.++      .....+.+|..+|++++|+|  ++|++++.|| +.+
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~------~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~l  384 (393)
T 4gq1_A          312 ISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK------DSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLL  384 (393)
T ss_dssp             ECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT------TCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEE
T ss_pred             ccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC------cEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEE
Confidence                         2  3346778889999999999988      55666778899999999976  7999998776 767


Q ss_pred             EeCCc
Q 009993          389 IDVRK  393 (520)
Q Consensus       389 wd~~~  393 (520)
                      |.+..
T Consensus       385 vrL~g  389 (393)
T 4gq1_A          385 TRLMG  389 (393)
T ss_dssp             EEEGG
T ss_pred             EEEeC
Confidence            76644

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=1.4e-25  Score=206.94  Aligned_cols=238  Identities=11%  Similarity=0.056  Sum_probs=158.3

Q ss_pred             HhhhhhccccccEEEEEEccCCC-EEEEEeCCCeE-EEEEC--CCC----cEEEEeCCCCceEEEEecCCCEEEEEe--C
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAK-LLFTSGYDSIV-RMWHL--EDG----FSIASSKPLGCTIRAVAADKKLLVAGG--T  202 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~-~l~sgs~dg~v-~vwd~--~~~----~~~~~~~~~~~~v~~~~~~~~~l~sg~--~  202 (520)
                      +.++++++|..+|..+.+.||.. +++.+-..=.+ -++-+  ...    .......+|...+..+ ++++.+.+++  .
T Consensus        77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l-~~g~lv~ss~~g~  155 (356)
T 2w18_A           77 EKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL-TKRRLVSSSGTLS  155 (356)
T ss_dssp             EEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE-TTTEEEEEESSST
T ss_pred             eeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec-CCCcEEEecccCC
Confidence            34677788887777777777432 22222111111 11111  100    1111112233334444 4555555543  5


Q ss_pred             CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-----cCCEEEEEecCCeEEEEECCCCcEEEEee-ec
Q 009993          203 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-----DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HS  276 (520)
Q Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-----~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~  276 (520)
                      |+.|++|++....            .....+.+|...++.++|     ++..|++|+.|++|++||+.++++++++. |.
T Consensus       156 d~~V~~~~~s~dG------------~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~  223 (356)
T 2w18_A          156 DQQVEVMTFAEDG------------GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD  223 (356)
T ss_dssp             TCEEEEEEECTTS------------CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC
T ss_pred             CCcEEEEEECCCC------------ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC
Confidence            8999999984421            233445567766666665     45899999999999999999999999996 32


Q ss_pred             ---cCEEE--EeeCCCEE------------EEEc-CCeEEEEECCCCeeeEEe----ecccccceEEEEecCCCCEEEEE
Q 009993          277 ---DWVYG--LAPHDTTV------------ASTS-GSDVYIWDTNSGCLLTVV----NGAHVGNTKSLARSHTGDFLFTG  334 (520)
Q Consensus       277 ---~~v~~--~~~~~~~l------------~~~~-d~~i~iwd~~~~~~~~~~----~~~~~~~i~~l~~s~~~~~l~tg  334 (520)
                         ..+.+  ++|++.++            ++|+ |++|++||..+++.+..+    ..+|...+.+..++  +.++++|
T Consensus       224 ~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASg  301 (356)
T 2w18_A          224 SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAI  301 (356)
T ss_dssp             ---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEE
T ss_pred             cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEE
Confidence               34543  45888876            4566 899999999999887765    24666665555544  8899999


Q ss_pred             eCCCeEEEEEcccCccccceeeeeeecCCcCCEE-EEEecC--CEEEEEeCCCcEEEEeC
Q 009993          335 GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN-SLAFEF--PWLVSAAGDGKLSLIDV  391 (520)
Q Consensus       335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~--~~l~s~s~dg~i~vwd~  391 (520)
                      +.|++|+|||+.++      +++.++.+|...+. +++|+|  ++|++|+.|++|+|||+
T Consensus       302 S~DgTIkIWDl~tG------k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          302 LTSGTIAIWDLLLG------QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             ETTSCEEEEETTTC------SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             cCCCcEEEEECCCC------cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            99999999999999      78899999987655 589987  59999999999999995

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.93  E-value=2e-23  Score=207.09  Aligned_cols=234  Identities=13%  Similarity=0.103  Sum_probs=191.2

Q ss_pred             hhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEE--ecCCCEEE-EEeCCCcEEEEEccc
Q 009993          137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLV-AGGTDGFIHCWRAVE  213 (520)
Q Consensus       137 ~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~-sg~~dg~i~vwd~~~  213 (520)
                      .+.+|.+.|.+++|+|+++++++++.|+.|++||+.+++.+..+..|...+.++  ++++..++ +++.|+.|++||+.+
T Consensus       164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~  243 (433)
T 3bws_A          164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT  243 (433)
T ss_dssp             HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC
Confidence            567999999999999999999999999999999999999998888777666554  58888875 555799999999876


Q ss_pred             CcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEe--------cCCeEEEEECCCCcEEEEeeeccCEEEEe
Q 009993          214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS--------WDMTVRVWDRALLKCLKVLRHSDWVYGLA  283 (520)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s--------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~  283 (520)
                      +.             ....+. +...+.++++  +++++++++        .|+.|++||+.+++.+..+.+...+.++.
T Consensus       244 ~~-------------~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  309 (433)
T 3bws_A          244 KL-------------EIRKTD-KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIV  309 (433)
T ss_dssp             TE-------------EEEECC-CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEE
T ss_pred             Cc-------------EEEEec-CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEE
Confidence            53             222332 3455889999  667888888        48899999999999888887777777766


Q ss_pred             --eCCCEE-EEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC---------------CCeEEEEE
Q 009993          284 --PHDTTV-ASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE---------------DGAIHMYE  344 (520)
Q Consensus       284 --~~~~~l-~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~---------------dg~i~iwd  344 (520)
                        ++++.+ ++++ ++.|++||+.+++.+..+.  +...+.+++|+|+++++++++.               ||.|++||
T Consensus       310 ~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d  387 (433)
T 3bws_A          310 SGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP--VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVID  387 (433)
T ss_dssp             ECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEE
T ss_pred             ECCCCCEEEEEecCCCEEEEEECCCCcEEEEec--CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEE
Confidence              778655 5546 8999999999999888775  6778999999999999888876               57999999


Q ss_pred             cccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeC-CCcEEEEeCCc
Q 009993          345 IINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG-DGKLSLIDVRK  393 (520)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~-dg~i~vwd~~~  393 (520)
                      +.++      ..+..+.. ...+.+++|+|  ++|++++. |+.|++|++..
T Consensus       388 ~~~~------~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          388 TTTD------TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             TTTT------EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             CCCC------cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            9888      55555555 45789999976  57877764 99999999864

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=3.7e-23  Score=209.77  Aligned_cols=324  Identities=12%  Similarity=0.071  Sum_probs=222.8

Q ss_pred             EEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC-CCCceEEEEecCCCEEEEEeCCCcEEEEEc--ccCcceeeeccCCc
Q 009993          149 FVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRAVAADKKLLVAGGTDGFIHCWRA--VEVLPHLFDISGSE  225 (520)
Q Consensus       149 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~--~~~~~~~~~~~~~~  225 (520)
                      +|+|++.++++++.|++|.+||..+++.+.++. ++......++|++++|++++.|+.|.+||+  .++.          
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~----------  213 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT----------  213 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE----------
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCc----------
Confidence            378999999999999999999999999999887 555455567899999999999999999999  5542          


Q ss_pred             cccceEEeccCCCCeEEEEEc------CCEEEEEe-cCCeEEEEECCCCcEEEEeee-----------c-cCEEEEe--e
Q 009993          226 KQNTQFRLWEHEGPITSLALD------LTRIYSGS-WDMTVRVWDRALLKCLKVLRH-----------S-DWVYGLA--P  284 (520)
Q Consensus       226 ~~~~~~~~~~h~~~v~~l~~~------~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~-----------~-~~v~~~~--~  284 (520)
                         ....+. +...+..++|+      ++++++++ .+++|.+||..+++++..+..           . ..+.++.  +
T Consensus       214 ---~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~  289 (543)
T 1nir_A          214 ---KVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH  289 (543)
T ss_dssp             ---EEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred             ---EEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC
Confidence               233443 44567888884      57888887 489999999999999888762           1 2566665  5


Q ss_pred             CCCEE-EEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEE-eCCCeEEEEEcccCccccceeeeeeec
Q 009993          285 HDTTV-ASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDCTEANVLLVATWI  361 (520)
Q Consensus       285 ~~~~l-~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~~~  361 (520)
                      ++..+ ++.. ++.|.+||..+++.+......+...+..+.|+|+|++++++ ..+++|.+||+.++      +++..+.
T Consensus       290 ~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg------~l~~~i~  363 (543)
T 1nir_A          290 EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR------RLSALVD  363 (543)
T ss_dssp             SSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT------EEEEEEE
T ss_pred             CCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC------eEEEeec
Confidence            55554 4445 79999999988765442111356678889999999987655 45899999999998      4555554


Q ss_pred             C----CcCCEEEEEecC---CEEEEEe-CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceee--EEEEe
Q 009993          362 P----HTGPVNSLAFEF---PWLVSAA-GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL--LSVDI  431 (520)
Q Consensus       362 ~----h~~~v~~l~~~~---~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~  431 (520)
                      .    |.+....+ ++|   ..++++. .|++|.+||+.+.....  ..          ....+.+.+|...+  ..+++
T Consensus       364 ~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~--~~----------~~~v~~l~~~g~~~~~v~~~p  430 (543)
T 1nir_A          364 VGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ--YA----------WKKVAELQGQGGGSLFIKTHP  430 (543)
T ss_dssp             CSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT--TB----------TSEEEEEECSCSCCCCEECCT
T ss_pred             cCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch--hc----------CeEEEEEEcCCCCceEEEcCC
Confidence            3    65444444 343   4666765 68999999998621100  00          12233344454443  44566


Q ss_pred             cCCEEEEec-------CCCeEEEEeCCchHhHHHHhhh--hcccccchhhhhccceeeeccCCCcccccccccccCCCCC
Q 009993          432 GADRIVCGG-------EEGIVRIWNFSQAFEIERRARA--LRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNG  502 (520)
Q Consensus       432 ~~~~l~sg~-------~Dg~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~~~~~~~~~  502 (520)
                      ++++|++++       .+++|.+||+.+++.+.+....  ..+.   ....+++..++|+|||+.+..+....+.   ..
T Consensus       431 dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~g~~~~~s~~~~~~---~~  504 (543)
T 1nir_A          431 KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADL---GEGAKRVVQPEYNKRGDEVWFSVWNGKN---DS  504 (543)
T ss_dssp             TCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCC---CSSCCEEEEEEECSSSSEEEEEEECCTT---SC
T ss_pred             CCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhccc---CCCCCceEeccCCCCCCEEEEEeecCCC---CC
Confidence            677888887       2789999999987643111000  0000   1114567899999999999977654322   11


Q ss_pred             Ccceeeecc
Q 009993          503 NRRSVWHNK  511 (520)
Q Consensus       503 ~~~~~~~~~  511 (520)
                      +...||..+
T Consensus       505 ~~i~v~D~~  513 (543)
T 1nir_A          505 SALVVVDDK  513 (543)
T ss_dssp             CEEEEEETT
T ss_pred             CeEEEEECC
Confidence            234677665

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.91  E-value=6.2e-23  Score=201.86  Aligned_cols=289  Identities=13%  Similarity=0.048  Sum_probs=203.4

Q ss_pred             cEEEEEEccCC-CEEEEEe----CCC----eEEEEEC--CCCcEE--EEeCCCCceEEEEe--c--------------CC
Q 009993          144 AVLTVFVLASA-KLLFTSG----YDS----IVRMWHL--EDGFSI--ASSKPLGCTIRAVA--A--------------DK  194 (520)
Q Consensus       144 ~V~~l~~~~~~-~~l~sgs----~dg----~v~vwd~--~~~~~~--~~~~~~~~~v~~~~--~--------------~~  194 (520)
                      .|...+|.+.| +++++|+    .||    +|++||+  .+++.+  ..+.+|...+..+.  +              .+
T Consensus        64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~  143 (415)
T 2hqs_A           64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR  143 (415)
T ss_dssp             GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred             CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence            45555666665 4566776    467    8999999  899877  44677766554433  1              15


Q ss_pred             CEEEEEeCC------CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCC---eEEEEE
Q 009993          195 KLLVAGGTD------GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM---TVRVWD  263 (520)
Q Consensus       195 ~~l~sg~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg---~v~iwd  263 (520)
                      ..++.++.+      +.|++||+..+              ....+.+|...|.+++|  ++++|++++.|+   .|++||
T Consensus       144 ~~l~~~s~~~~~~~~~~i~i~d~~g~--------------~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d  209 (415)
T 2hqs_A          144 TRIAYVVQTNGGQFPYELRVSDYDGY--------------NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQT  209 (415)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEETTSC--------------SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CEEEEEEecCCCCccceEEEEcCCCC--------------CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEE
Confidence            666666654      79999998643              34556678999999999  778999999885   999999


Q ss_pred             CCCCcEEEEeeeccCEEEEe--eCCCEEE-EEc-CC--eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC-
Q 009993          264 RALLKCLKVLRHSDWVYGLA--PHDTTVA-STS-GS--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-  336 (520)
Q Consensus       264 ~~~~~~~~~~~~~~~v~~~~--~~~~~l~-~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~-  336 (520)
                      +.+++......+...+.++.  |+++.|+ +++ ++  .|++||+.+++.. .+. .|...+.+++|+|+|++|++++. 
T Consensus       210 ~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~spdg~~l~~~s~~  287 (415)
T 2hqs_A          210 LANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVT-DGRSNNTEPTWFPDSQNLAFTSDQ  287 (415)
T ss_dssp             TTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECC-CCSSCEEEEEECTTSSEEEEEECT
T ss_pred             CCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCc-CCCCcccceEECCCCCEEEEEECC
Confidence            99998876555777787766  8999877 555 44  4999999988763 443 57888999999999999888876 


Q ss_pred             CC--eEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCC---CcEEEEeCCcccccCCCCCCCceeee
Q 009993          337 DG--AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD---GKLSLIDVRKLLRSGRPTSGKRVSRV  409 (520)
Q Consensus       337 dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~  409 (520)
                      ++  .|++||+.++.       ...+..|...+.+++|+|  ++|++++.+   +.|++||+.++..             
T Consensus       288 ~g~~~i~~~d~~~~~-------~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-------------  347 (415)
T 2hqs_A          288 AGRPQVYKVNINGGA-------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-------------  347 (415)
T ss_dssp             TSSCEEEEEETTSSC-------CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-------------
T ss_pred             CCCcEEEEEECCCCC-------EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-------------
Confidence            45  67777887762       233455667889999976  578777754   5899999987421             


Q ss_pred             eecCCCcccccCcceeeEEEEecCCEEEEecCCC---eEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCC
Q 009993          410 IEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEG---IVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKG  485 (520)
Q Consensus       410 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g  485 (520)
                            ............++++++++|++++.|+   .|++||+..+.. ..          .......+..++|+|.-
T Consensus       348 ------~~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~-~~----------l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          348 ------QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-AR----------LPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             ------EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EE----------CCCSSSEEEEEEECCCC
T ss_pred             ------EEecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcE-EE----------eeCCCCCCcCCcccccc
Confidence                  1111112233455666777888888777   799999874321 11          11122345677777754

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=3.2e-22  Score=202.85  Aligned_cols=304  Identities=13%  Similarity=0.079  Sum_probs=211.2

Q ss_pred             CcccHH----Hhhhhhc-cccccEEEEEEccCCCEEEEEeCCCeEEEEEC--CCCcEEEEeCCCCc-eEEEEec----CC
Q 009993          127 DDKSWK----ELIDVLY-GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHL--EDGFSIASSKPLGC-TIRAVAA----DK  194 (520)
Q Consensus       127 ~~~~W~----~~~~~l~-~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~--~~~~~~~~~~~~~~-~v~~~~~----~~  194 (520)
                      ....|+    +++.++. +|.  +.+++|+|+|++|++++.|++|++||+  .+++.+.++..+.. .-.+++|    ++
T Consensus       160 ~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg  237 (543)
T 1nir_A          160 QIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYED  237 (543)
T ss_dssp             EEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTT
T ss_pred             eEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCC
Confidence            346676    4456666 444  899999999999999999999999999  88888888874433 2345668    99


Q ss_pred             CEEEEEeC-CCcEEEEEcccCcceeeeccCCccccceEEecc----------C-CCCeEEEEEc--C-CEEEEEecCCeE
Q 009993          195 KLLVAGGT-DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE----------H-EGPITSLALD--L-TRIYSGSWDMTV  259 (520)
Q Consensus       195 ~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~----------h-~~~v~~l~~~--~-~~l~s~s~dg~v  259 (520)
                      +++++++. +++|.+||..+++.             ...+..          | ...+.++.++  + .++++...+++|
T Consensus       238 ~~l~v~~~~~~~v~v~D~~t~~~-------------~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i  304 (543)
T 1nir_A          238 RYTIAGAYWPPQFAIMDGETLEP-------------KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV  304 (543)
T ss_dssp             TEEEEEEEESSEEEEEETTTCCE-------------EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             CEEEEEEccCCeEEEEecccccc-------------ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeE
Confidence            99999885 89999999877642             112211          2 2378888883  3 457778889999


Q ss_pred             EEEECCCCcEEE--EeeeccCEEE--EeeCCCEEEEEc--CCeEEEEECCCCeeeEEeecc---cccceEEEEecCC-CC
Q 009993          260 RVWDRALLKCLK--VLRHSDWVYG--LAPHDTTVASTS--GSDVYIWDTNSGCLLTVVNGA---HVGNTKSLARSHT-GD  329 (520)
Q Consensus       260 ~iwd~~~~~~~~--~~~~~~~v~~--~~~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~~~---~~~~i~~l~~s~~-~~  329 (520)
                      .+||..+.+.+.  .+.+...+..  ++|+++++++++  +++|.+||+.+++++..+..+   |.+....+ ++|+ +.
T Consensus       305 ~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~  383 (543)
T 1nir_A          305 LLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGP  383 (543)
T ss_dssp             EEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEE
T ss_pred             EEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCcc
Confidence            999998876544  4444444544  458999776654  799999999999998887632   55444443 4677 55


Q ss_pred             EEEEEe-CCCeEEEEEcccCcc-ccceeeeeeecCCcCCEEEEEecC--CEEEEEe-------CCCcEEEEeCCcccccC
Q 009993          330 FLFTGG-EDGAIHMYEIINDCT-EANVLLVATWIPHTGPVNSLAFEF--PWLVSAA-------GDGKLSLIDVRKLLRSG  398 (520)
Q Consensus       330 ~l~tg~-~dg~i~iwd~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s-------~dg~i~vwd~~~~~~~~  398 (520)
                      .++++. .|++|.+||+.+... ....+.+.++.+|.+.+..+.++|  ++|++++       .+++|.|||+.+.....
T Consensus       384 ~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~  463 (543)
T 1nir_A          384 VWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKY  463 (543)
T ss_dssp             EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCC
T ss_pred             EEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCe
Confidence            666665 589999999987211 112378899999998889999987  6888887       27799999999863221


Q ss_pred             CCCCCCceeeeeecCCCcccccCcceeeEEEEe--cCCEEEEe-----cCCCeEEEEeCCchHhH
Q 009993          399 RPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GADRIVCG-----GEEGIVRIWNFSQAFEI  456 (520)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg-----~~Dg~v~iwd~~~~~~~  456 (520)
                      .         ...+... .-+..+...+..+.+  +++.++++     +.|+.|.|||..+++.+
T Consensus       464 ~---------~~~v~~~-~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~  518 (543)
T 1nir_A          464 Q---------VLPIAEW-ADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK  518 (543)
T ss_dssp             E---------EECHHHH-HCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred             E---------Eeechhh-cccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence            0         0000000 001223344555554  55655543     35899999999988654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.88  E-value=5.7e-21  Score=202.85  Aligned_cols=303  Identities=13%  Similarity=-0.014  Sum_probs=212.7

Q ss_pred             cccEEEEEEccCCCEEEEEeC-CC-----eEEEEECCCCcEEEEeCCCC--------------------------ceEEE
Q 009993          142 TEAVLTVFVLASAKLLFTSGY-DS-----IVRMWHLEDGFSIASSKPLG--------------------------CTIRA  189 (520)
Q Consensus       142 ~~~V~~l~~~~~~~~l~sgs~-dg-----~v~vwd~~~~~~~~~~~~~~--------------------------~~v~~  189 (520)
                      ...|.+++|+|||++|++++. |+     .|++||+.+++....+..+.                          ..-.+
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            557899999999999999998 88     99999999998776665432                          22346


Q ss_pred             EecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCC
Q 009993          190 VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL  267 (520)
Q Consensus       190 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~  267 (520)
                      ++|||++|++++. +.|.+||+.++..           .....+..|...+.+++|  |+++|++++ ++.|++||+.++
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~-----------~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g  182 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGK-----------AAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASG  182 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCST-----------TSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTT
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCc-----------ceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCC
Confidence            7799999999987 9999999876510           012234567788999999  788898887 469999999988


Q ss_pred             cEEEEee-ecc------------------CEEEEeeCCCEEEEEc-CC--------------------------------
Q 009993          268 KCLKVLR-HSD------------------WVYGLAPHDTTVASTS-GS--------------------------------  295 (520)
Q Consensus       268 ~~~~~~~-~~~------------------~v~~~~~~~~~l~~~~-d~--------------------------------  295 (520)
                      +...... +..                  .-..++|+++.|+.++ |+                                
T Consensus       183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~  262 (741)
T 2ecf_A          183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ  262 (741)
T ss_dssp             EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred             CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence            7765544 222                  2245669999888876 54                                


Q ss_pred             -eEEEEECCC-CeeeEEeec-ccccceEEEEecCCCCEEEEEeC-----CCeEEEEEcccCccccceeeeeeecCCcC--
Q 009993          296 -DVYIWDTNS-GCLLTVVNG-AHVGNTKSLARSHTGDFLFTGGE-----DGAIHMYEIINDCTEANVLLVATWIPHTG--  365 (520)
Q Consensus       296 -~i~iwd~~~-~~~~~~~~~-~~~~~i~~l~~s~~~~~l~tg~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~h~~--  365 (520)
                       .|++||+.+ ++....... .|...+..++| |||++|++++.     +..|++||+.++      .....+..+..  
T Consensus       263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g------~~~~~~~~~~~~~  335 (741)
T 2ecf_A          263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN------QQRVLAHETSPTW  335 (741)
T ss_dssp             EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC------CEEEEEEEECSSC
T ss_pred             eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC------ceEEEEEcCCCCc
Confidence             789999998 776544332 47788999999 99999987654     567999999887      33333333332  


Q ss_pred             --CEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceee---EEEEecCCEE-E
Q 009993          366 --PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL---LSVDIGADRI-V  437 (520)
Q Consensus       366 --~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~l-~  437 (520)
                        .+..++|+|  +++++++.||.++||.+...                  .. ...+..+...+   ..++++++.| +
T Consensus       336 ~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~------------------~~-~~~l~~~~~~v~~~~~~s~dg~~l~~  396 (741)
T 2ecf_A          336 VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK------------------GK-AAALTHGNWSVDELLAVDEKAGLAYF  396 (741)
T ss_dssp             CCCCSCCEECTTSCEEEEECTTSSCEEEEECSS------------------SC-EEESCCSSSCEEEEEEEETTTTEEEE
T ss_pred             CCcCCceEECCCCeEEEEecCCCccEEEEEcCC------------------CC-eeeeeecceEEEeEeEEeCCCCEEEE
Confidence              446788865  68888999998888877531                  11 12223333333   3467777755 5


Q ss_pred             EecCCC--eEEEEeCCc-hHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccccc
Q 009993          438 CGGEEG--IVRIWNFSQ-AFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA  494 (520)
Q Consensus       438 sg~~Dg--~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~  494 (520)
                      +++.|+  .++||++.. +..+.       ...  .  ......++|+|||++++.....
T Consensus       397 ~~~~~~~~~~~l~~~~~~g~~~~-------~l~--~--~~~~~~~~~spdg~~l~~~~~~  445 (741)
T 2ecf_A          397 RAGIESARESQIYAVPLQGGQPQ-------RLS--K--APGMHSASFARNASVYVDSWSN  445 (741)
T ss_dssp             EECSSCTTCBEEEEEETTCCCCE-------ECC--C--SCSEEEEEECTTSSEEEEEEEE
T ss_pred             EEeCCCCceEEEEEEEcCCCCee-------ecc--c--CCCceEEEECCCCCEEEEEecC
Confidence            566666  899999864 21111       111  1  2234588999999998876443

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.87  E-value=1.2e-20  Score=185.64  Aligned_cols=262  Identities=10%  Similarity=-0.015  Sum_probs=193.5

Q ss_pred             cccHHH--h----h--hhhccccccEEEEEEcc--------------CCCEEEEEeCC------CeEEEEECCCCcEEEE
Q 009993          128 DKSWKE--L----I--DVLYGHTEAVLTVFVLA--------------SAKLLFTSGYD------SIVRMWHLEDGFSIAS  179 (520)
Q Consensus       128 ~~~W~~--~----~--~~l~~h~~~V~~l~~~~--------------~~~~l~sgs~d------g~v~vwd~~~~~~~~~  179 (520)
                      .++|+.  .    +  ..+.+|...+..+++++              .+..++.++.+      +.|++||+.. .....
T Consensus        95 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~  173 (415)
T 2hqs_A           95 YQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFV  173 (415)
T ss_dssp             EEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEE
T ss_pred             EEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEE
Confidence            477764  2    2  44678888777777664              15566666554      7999999974 44566


Q ss_pred             eCCCCceEEE--EecCCCEEEEEeCCC---cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEE-
Q 009993          180 SKPLGCTIRA--VAADKKLLVAGGTDG---FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIY-  251 (520)
Q Consensus       180 ~~~~~~~v~~--~~~~~~~l~sg~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~-  251 (520)
                      +.+|...+.+  ++|+++.|++++.++   .|++||+.++.              ...+..|...+.+++|  +++.|+ 
T Consensus       174 l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~--------------~~~l~~~~~~~~~~~~spdg~~la~  239 (415)
T 2hqs_A          174 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--------------VRQVASFPRHNGAPAFSPDGSKLAF  239 (415)
T ss_dssp             EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--------------EEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             EeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc--------------EEEeecCCCcccCEEEcCCCCEEEE
Confidence            6667666665  459999999999885   99999998763              2345678889999999  677777 


Q ss_pred             EEecCC--eEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc--CC--eEEEEECCCCeeeEEeecccccceEEEE
Q 009993          252 SGSWDM--TVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS--GS--DVYIWDTNSGCLLTVVNGAHVGNTKSLA  323 (520)
Q Consensus       252 s~s~dg--~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~--d~--~i~iwd~~~~~~~~~~~~~~~~~i~~l~  323 (520)
                      +++.|+  .|++||+.+++......+...+.++.  |+++.|+.++  ++  .|++||+.+++... +. .+...+.+++
T Consensus       240 ~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l~-~~~~~~~~~~  317 (415)
T 2hqs_A          240 ALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-IT-WEGSQNQDAD  317 (415)
T ss_dssp             EECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CC-CSSSEEEEEE
T ss_pred             EEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-Ee-cCCCcccCeE
Confidence            666665  49999999988755445777787766  8999888777  33  68888998886433 33 3667889999


Q ss_pred             ecCCCCEEEEEeCC---CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCC---cEEEEeCCccc
Q 009993          324 RSHTGDFLFTGGED---GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDG---KLSLIDVRKLL  395 (520)
Q Consensus       324 ~s~~~~~l~tg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg---~i~vwd~~~~~  395 (520)
                      |+|+|++|++++.+   +.|++||+.++.      . ..+..|. .+.+++|+|  ++|++++.++   .|++||+... 
T Consensus       318 ~spdG~~l~~~~~~~g~~~i~~~d~~~~~------~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~-  388 (415)
T 2hqs_A          318 VSSDGKFMVMVSSNGGQQHIAKQDLATGG------V-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR-  388 (415)
T ss_dssp             ECTTSSEEEEEEECSSCEEEEEEETTTCC------E-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC-
T ss_pred             ECCCCCEEEEEECcCCceEEEEEECCCCC------E-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC-
Confidence            99999999987764   589999998872      2 3344554 889999976  6788888776   7999998642 


Q ss_pred             ccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC
Q 009993          396 RSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD  434 (520)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  434 (520)
                                         ....+.+|...|.+++|++.
T Consensus       389 -------------------~~~~l~~~~~~v~~~~~~~~  408 (415)
T 2hqs_A          389 -------------------FKARLPATDGQVKFPAWSPY  408 (415)
T ss_dssp             -------------------CEEECCCSSSEEEEEEECCC
T ss_pred             -------------------cEEEeeCCCCCCcCCccccc
Confidence                               23345667778888888765

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.86  E-value=6.6e-20  Score=201.51  Aligned_cols=320  Identities=9%  Similarity=0.041  Sum_probs=223.6

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCC------CeEEEEECCCCcEEEEeCCCCceE---------EEEecCCCEEEE
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYD------SIVRMWHLEDGFSIASSKPLGCTI---------RAVAADKKLLVA  199 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~d------g~v~vwd~~~~~~~~~~~~~~~~v---------~~~~~~~~~l~s  199 (520)
                      .+.+.+|.+.|.+++|||||++|++++.+      ..|.+|++.+++ ...+..|...+         .+++|+|+.+++
T Consensus        45 ~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~  123 (1045)
T 1k32_A           45 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIIS  123 (1045)
T ss_dssp             EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred             EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEEE
Confidence            45678999999999999999999988643      479999998876 56677777665         566799997777


Q ss_pred             EeCC------CcEEEEEcccCcceeeeccCC------------------------------------ccccceEEeccCC
Q 009993          200 GGTD------GFIHCWRAVEVLPHLFDISGS------------------------------------EKQNTQFRLWEHE  237 (520)
Q Consensus       200 g~~d------g~i~vwd~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~h~  237 (520)
                      ++.+      ..|.+|++.++..........                                    ........+.+|.
T Consensus       124 ~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~  203 (1045)
T 1k32_A          124 TDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS  203 (1045)
T ss_dssp             ECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS
T ss_pred             ECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC
Confidence            7754      357788877664322111000                                    0001223456899


Q ss_pred             CCeEEEEEcCCE-EEEEecCCeEEEEECCC-CcEEEEee-ec-cCEEEEeeCCCEEEEEcCCeEEEEECCCCeeeEEeec
Q 009993          238 GPITSLALDLTR-IYSGSWDMTVRVWDRAL-LKCLKVLR-HS-DWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNG  313 (520)
Q Consensus       238 ~~v~~l~~~~~~-l~s~s~dg~v~iwd~~~-~~~~~~~~-~~-~~v~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~  313 (520)
                      ..+.++.|.++. +++++.|+++.+|.+.. +.....+. +. ....+++++++.++.+.++.|++||+.... +..+..
T Consensus       204 ~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~-l~~l~~  282 (1045)
T 1k32_A          204 THVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEK-IEKIEI  282 (1045)
T ss_dssp             SCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCC-EEECCC
T ss_pred             CcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceE-eeeecc
Confidence            999999996655 55677789999997653 33334443 32 235577799999999899999999995443 334432


Q ss_pred             ----------ccccceEEEEec-CCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcC-CEEEEEec-CCEEEEE
Q 009993          314 ----------AHVGNTKSLARS-HTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG-PVNSLAFE-FPWLVSA  380 (520)
Q Consensus       314 ----------~~~~~i~~l~~s-~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~-~~~l~s~  380 (520)
                                .|...+.+++|+ |+|++|++++ ++.|.+|++..+      . ...+..|.. .+..++|+ ++.|+++
T Consensus       283 ~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~------~-~~~~~~~~~~~~~~~~~sdg~~l~~~  354 (1045)
T 1k32_A          283 GDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT------Y-VLKVPEPLRIRYVRRGGDTKVAFIHG  354 (1045)
T ss_dssp             CCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSS------B-EEECSCCSCEEEEEECSSSEEEEEEE
T ss_pred             CcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCC------c-eEEccCCCcceEEeeeEcCCCeEEEE
Confidence                      134468899999 9999999887 889999998876      2 233556776 88899997 3478888


Q ss_pred             eCCCcEE-EEeCCcccccCCCCCCCceeeeeecCCCcccccCccee--eEEEEecCCEEEEecCCCeEEEEeCCchHhHH
Q 009993          381 AGDGKLS-LIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN--LLSVDIGADRIVCGGEEGIVRIWNFSQAFEIE  457 (520)
Q Consensus       381 s~dg~i~-vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~  457 (520)
                      +.++.+. +||+.+...                   .. +.+|...  ..++++++++|++++.++.|++||+.++....
T Consensus       355 s~~~~l~~~~d~~~~~~-------------------~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~  414 (1045)
T 1k32_A          355 TREGDFLGIYDYRTGKA-------------------EK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV  414 (1045)
T ss_dssp             ETTEEEEEEEETTTCCE-------------------EE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             ECCCceEEEEECCCCCc-------------------eE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEE
Confidence            8888888 889875311                   11 1133333  44556667799999999999999998764321


Q ss_pred             HHhhhhcccccchhhhhccceeeeccCCCcccccccc
Q 009993          458 RRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA  494 (520)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~  494 (520)
                      .          ..........++|+|||++++.++..
T Consensus       415 ~----------~~~~~~~v~~~~~SpDG~~la~~~~~  441 (1045)
T 1k32_A          415 I----------ERSREAMITDFTISDNSRFIAYGFPL  441 (1045)
T ss_dssp             E----------EECSSSCCCCEEECTTSCEEEEEEEE
T ss_pred             e----------ccCCCCCccceEECCCCCeEEEEecC
Confidence            1          11122335789999999999887654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.85  E-value=9.3e-19  Score=166.77  Aligned_cols=278  Identities=9%  Similarity=-0.004  Sum_probs=183.3

Q ss_pred             EEccCCC-EEEEEeCCCeEEEEECCCCcEEEEeCCCCce-EEEEecCCCEEEEEeC-CCcEEEEEcccCcceeeeccCCc
Q 009993          149 FVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLGCT-IRAVAADKKLLVAGGT-DGFIHCWRAVEVLPHLFDISGSE  225 (520)
Q Consensus       149 ~~~~~~~-~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~  225 (520)
                      .|.++++ .+++++.++.|.+||+.+++.+..+..+... ..+++++++++++++. ++.|.+||..++..         
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~---------   74 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPP---------   74 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSSSSC---------
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCCCce---------
Confidence            3555544 4778888999999999999888776644333 4556699997776665 89999999987631         


Q ss_pred             cccceEEeccCCCCeEEEEE--cCCEEEEEecCC---eEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc--CCe
Q 009993          226 KQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM---TVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS--GSD  296 (520)
Q Consensus       226 ~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg---~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~--d~~  296 (520)
                         ....+..+..+..++++  ++++++++..++   .|.+||+.+++.+..+.......++.  |++++++++.  ++.
T Consensus        75 ---~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  151 (331)
T 3u4y_A           75 ---KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSAN  151 (331)
T ss_dssp             ---EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTT
T ss_pred             ---eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCc
Confidence               13344455555554788  678888655553   99999999999988887655566655  8887665554  578


Q ss_pred             -EEEEECCCCeeeE----EeecccccceEEEEecCCCCEEEE-EeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEE
Q 009993          297 -VYIWDTNSGCLLT----VVNGAHVGNTKSLARSHTGDFLFT-GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL  370 (520)
Q Consensus       297 -i~iwd~~~~~~~~----~~~~~~~~~i~~l~~s~~~~~l~t-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l  370 (520)
                       |.+|++.....+.    ... .....+..++|+|+|+++++ +..++.|++||+.++...   ..+..+.. ...+..+
T Consensus       152 ~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~---~~~~~~~~-~~~~~~~  226 (331)
T 3u4y_A          152 TVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI---TLLNAVGT-NNLPGTI  226 (331)
T ss_dssp             EEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC---EEEEEEEC-SSCCCCE
T ss_pred             eEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc---ceeeeccC-CCCCceE
Confidence             9999987643321    111 23456889999999996654 556899999999887320   11444443 3567889


Q ss_pred             EecC--CEEEEE-eCCCcEEEEeCCcccccCCCCCCCceeeeeecCCC--cccccCcceeeEEEEecCCEE-EEecCCCe
Q 009993          371 AFEF--PWLVSA-AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPP--QRMLHGFECNLLSVDIGADRI-VCGGEEGI  444 (520)
Q Consensus       371 ~~~~--~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~l-~sg~~Dg~  444 (520)
                      +|+|  ++|+.+ ..++.|.+||+.++....          +..+...  ............++++++++| +++..++.
T Consensus       227 ~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~  296 (331)
T 3u4y_A          227 VVSRDGSTVYVLTESTVDVFNFNQLSGTLSF----------VKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRE  296 (331)
T ss_dssp             EECTTSSEEEEECSSEEEEEEEETTTTEEEE----------EEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTE
T ss_pred             EECCCCCEEEEEEcCCCEEEEEECCCCceee----------ecccccccccCCCCcccccceEECCCCCEEEEecCCCCc
Confidence            9976  556555 457889999998753210          0000000  000001111335778888865 55566779


Q ss_pred             EEEEeCCch
Q 009993          445 VRIWNFSQA  453 (520)
Q Consensus       445 v~iwd~~~~  453 (520)
                      |.+||+...
T Consensus       297 v~v~d~~~~  305 (331)
T 3u4y_A          297 LKVFTISGK  305 (331)
T ss_dssp             EEEEETTSC
T ss_pred             EEEEEecCC
Confidence            999999864

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.85  E-value=3.5e-20  Score=196.21  Aligned_cols=307  Identities=7%  Similarity=-0.011  Sum_probs=202.2

Q ss_pred             cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCC-----ceEEEEecCCCEEEEEeCC---------CcEEEE
Q 009993          144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-----CTIRAVAADKKLLVAGGTD---------GFIHCW  209 (520)
Q Consensus       144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~l~sg~~d---------g~i~vw  209 (520)
                      .+.+++|+|||+++++ +.||+|++||+.+++....+..|.     ..-.+++|||++|++++.+         +.|.+|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            4678899999997776 789999999999998887777665     3456778999999999875         778899


Q ss_pred             EcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCE-------
Q 009993          210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWV-------  279 (520)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v-------  279 (520)
                      |+.++...           ......+|...+..++|  ||+.|++++. +.|++||+.+++...... +...+       
T Consensus        97 d~~~~~~~-----------~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~  164 (723)
T 1xfd_A           97 KIPHGDPQ-----------SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSD  164 (723)
T ss_dssp             ESSSCCCE-----------ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECC
T ss_pred             ECCCCceE-----------eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccc
Confidence            99876421           11112245555778888  7788988886 799999999987766554 22222       


Q ss_pred             -------------EEEeeCCCEEEEEc-CC----------------------------------eEEEEECCCCeeeEEe
Q 009993          280 -------------YGLAPHDTTVASTS-GS----------------------------------DVYIWDTNSGCLLTVV  311 (520)
Q Consensus       280 -------------~~~~~~~~~l~~~~-d~----------------------------------~i~iwd~~~~~~~~~~  311 (520)
                                   ..++|+++.|+.++ ++                                  .|++||+.+++....+
T Consensus       165 ~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l  244 (723)
T 1xfd_A          165 WLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM  244 (723)
T ss_dssp             HHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC
T ss_pred             eeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEe
Confidence                         34459999998877 42                                  7999999998865555


Q ss_pred             ecc-----cccceEEEEecCCCCEEEEEeC----CCeEEEEEcccCccccceeeeeeec-CCcCCE----EEEEecC--C
Q 009993          312 NGA-----HVGNTKSLARSHTGDFLFTGGE----DGAIHMYEIINDCTEANVLLVATWI-PHTGPV----NSLAFEF--P  375 (520)
Q Consensus       312 ~~~-----~~~~i~~l~~s~~~~~l~tg~~----dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v----~~l~~~~--~  375 (520)
                      ...     +...+..++|+|||+++++...    +..|++||+.++.      ....+. .+...+    ..++|+|  +
T Consensus       245 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~------~~~~~~~~~~~~~~~~~~~~~~spdg~  318 (723)
T 1xfd_A          245 MPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV------CTKKHEDESEAWLHRQNEEPVFSKDGR  318 (723)
T ss_dssp             CCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC------EEEEEEEECSSCCCCCCCCCEECTTSC
T ss_pred             eCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc------ceEEEEeccCCEEeccCCCceEcCCCC
Confidence            421     2567899999999998877643    3579999998873      333322 233333    3678876  4


Q ss_pred             EEEE--EeCCC------cEEEEeC-CcccccCCCCCCCceeeeeecCCCccccc-Ccc--eeeEEEEecCCEEEEecC-C
Q 009993          376 WLVS--AAGDG------KLSLIDV-RKLLRSGRPTSGKRVSRVIEVEPPQRMLH-GFE--CNLLSVDIGADRIVCGGE-E  442 (520)
Q Consensus       376 ~l~s--~s~dg------~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~v~~~~~~~~~l~sg~~-D  442 (520)
                      .|+.  +..++      .|.+||+ .+...                 .....+. ++.  ..+.+++++++.|+..+. +
T Consensus       319 ~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-----------------~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~  381 (723)
T 1xfd_A          319 KFFFIRAIPQGGRGKFYHITVSSSQPNSSN-----------------DNIQSITSGDWDVTKILAYDEKGNKIYFLSTED  381 (723)
T ss_dssp             SEEEEEEECCSSSSCEEEEEEECSSCCSSS-----------------CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSS
T ss_pred             eEEEEEecccCCCcceeEEEEEeccCCCCc-----------------cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCC
Confidence            4543  55677      5677773 33210                 0011111 111  123567888887765544 4


Q ss_pred             --CeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccccc
Q 009993          443 --GIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQC  491 (520)
Q Consensus       443 --g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~  491 (520)
                        +.++||++.......     .......-........++|+|||++++..
T Consensus       382 ~~~~~~l~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          382 LPRRRQLYSANTVGNFN-----RQCLSCDLVENCTYFSASFSHSMDFFLLK  427 (723)
T ss_dssp             CTTCCEEEEECSSTTCC-----CBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred             CCcceEEEEEeCCCCCC-----cceecccccCCCCeEEEEECCCCCEEEEE
Confidence              889999987532100     00000000012234678999999988864

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.84  E-value=4.3e-18  Score=163.55  Aligned_cols=233  Identities=11%  Similarity=0.030  Sum_probs=171.8

Q ss_pred             ccccEEEEEEccCCCEEEEEeC-------CCeEEEEECCCCcEEEEeCCC-CceEEEEecCCCEEEE-EeCCCcEEEEEc
Q 009993          141 HTEAVLTVFVLASAKLLFTSGY-------DSIVRMWHLEDGFSIASSKPL-GCTIRAVAADKKLLVA-GGTDGFIHCWRA  211 (520)
Q Consensus       141 h~~~V~~l~~~~~~~~l~sgs~-------dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~s-g~~dg~i~vwd~  211 (520)
                      ....+..++|+|+++++++++.       ++.|.+||..+++.+..+... ...-.+++++++.+++ +..++.|.+||.
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            4467889999999998888874       568999999999888776532 2334567899986554 555799999999


Q ss_pred             ccCcceeeeccCCccccceEEeccCCC---------CeEEEEE--cCCEEEEEe--cCCeEEEEECCCCcEEEEee-ecc
Q 009993          212 VEVLPHLFDISGSEKQNTQFRLWEHEG---------PITSLAL--DLTRIYSGS--WDMTVRVWDRALLKCLKVLR-HSD  277 (520)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~--~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~-~~~  277 (520)
                      .++..             ...+..+..         .+.++++  +++++++++  .++.|.+||..+++.+..+. +..
T Consensus       119 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  185 (353)
T 3vgz_A          119 KTGEV-------------KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGK  185 (353)
T ss_dssp             TTCCE-------------EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCT
T ss_pred             CCCee-------------EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCC
Confidence            87642             222222221         2677888  677777766  47899999999999988887 444


Q ss_pred             CEE--EEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeec---ccccceEEEEecCCCCEEEEEeC-CCeEEEEEcccCcc
Q 009993          278 WVY--GLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNG---AHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDCT  350 (520)
Q Consensus       278 ~v~--~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~---~~~~~i~~l~~s~~~~~l~tg~~-dg~i~iwd~~~~~~  350 (520)
                      .+.  .+.++++.++++. ++.|.+||+.+++....+..   ++...+..++|+|+++++++++. ++.|.+||+.++  
T Consensus       186 ~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~--  263 (353)
T 3vgz_A          186 MSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG--  263 (353)
T ss_dssp             TCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC--
T ss_pred             ccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC--
Confidence            444  4558999888888 89999999999998877763   24556888999999997776665 599999999887  


Q ss_pred             ccceeeeeeecCCcCCEEEEEecC--CEEEEE-eCCCcEEEEeCCcc
Q 009993          351 EANVLLVATWIPHTGPVNSLAFEF--PWLVSA-AGDGKLSLIDVRKL  394 (520)
Q Consensus       351 ~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~-s~dg~i~vwd~~~~  394 (520)
                          ..+..+....  ...++|+|  ++++++ ..++.|.+||+.++
T Consensus       264 ----~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~  304 (353)
T 3vgz_A          264 ----NILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY  304 (353)
T ss_dssp             ----CEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             ----cEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence                3444443332  24577865  555544 47899999999874

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=3.1e-19  Score=170.28  Aligned_cols=259  Identities=12%  Similarity=-0.001  Sum_probs=183.5

Q ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEeC-CC---CceEEEEecCCCEE-EEEeCCCcEEEEEcccCcceeeeccCCccccc
Q 009993          155 KLLFTSGYDSIVRMWHLEDGFSIASSK-PL---GCTIRAVAADKKLL-VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNT  229 (520)
Q Consensus       155 ~~l~sgs~dg~v~vwd~~~~~~~~~~~-~~---~~~v~~~~~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  229 (520)
                      +++++++.++.|.+||+.+++.+..+. ++   ...-.+++++++.+ +++..++.|.+||+.++..             
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-------------   68 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-------------   68 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-------------
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe-------------
Confidence            478999999999999999998888775 33   24456788999766 4556678999999977642             


Q ss_pred             eEEec-c----CCCCeEEEEE--cCCEEEEEe------------cCCeEEEEECCCCcEEEEeeeccCEEE--EeeCCCE
Q 009993          230 QFRLW-E----HEGPITSLAL--DLTRIYSGS------------WDMTVRVWDRALLKCLKVLRHSDWVYG--LAPHDTT  288 (520)
Q Consensus       230 ~~~~~-~----h~~~v~~l~~--~~~~l~s~s------------~dg~v~iwd~~~~~~~~~~~~~~~v~~--~~~~~~~  288 (520)
                      ...+. +    |...+.++++  +++++++++            .++.|.+||+.+++.+..+.....+.+  +++++++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~  148 (337)
T 1pby_B           69 LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSK  148 (337)
T ss_dssp             EEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSC
T ss_pred             EeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCE
Confidence            11111 1    1224567788  677888886            579999999999988887764444443  5589998


Q ss_pred             EEEEcCCeEEEEECCCCeeeEEeeccc-ccceEEEEecCCCCEEEEEeCCC------------------------eEEEE
Q 009993          289 VASTSGSDVYIWDTNSGCLLTVVNGAH-VGNTKSLARSHTGDFLFTGGEDG------------------------AIHMY  343 (520)
Q Consensus       289 l~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~tg~~dg------------------------~i~iw  343 (520)
                      ++++ ++.|++||+.+++....+..++ ..+   +.|+|++..++..+.++                        .|.+|
T Consensus       149 l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  224 (337)
T 1pby_B          149 LYGL-GRDLHVMDPEAGTLVEDKPIQSWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM  224 (337)
T ss_dssp             EEEE-SSSEEEEETTTTEEEEEECSTTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEE
T ss_pred             EEEe-CCeEEEEECCCCcEeeeeeccccCCC---ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEE
Confidence            8877 7899999999999887776332 122   37899988766544332                        46899


Q ss_pred             EcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccC
Q 009993          344 EIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG  421 (520)
Q Consensus       344 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (520)
                      |+.++..    . ...+..+...+.+++|+|  ++++++  ++.|.+||+.++....         .         ...+
T Consensus       225 d~~~~~~----~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~---------~---------~~~~  279 (337)
T 1pby_B          225 DLETGEM----A-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIK---------R---------VPLP  279 (337)
T ss_dssp             ETTTCCE----E-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEE---------E---------EECS
T ss_pred             eCCCCCc----e-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcc---------e---------ecCC
Confidence            9988742    1 333455667888999976  577777  7999999998642211         0         0112


Q ss_pred             cceeeEEEEecCCEEEEecCCCeEEEEeCCchHh
Q 009993          422 FECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE  455 (520)
Q Consensus       422 ~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~  455 (520)
                      +.....++++++++|++++.++.|++||+.+++.
T Consensus       280 ~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~  313 (337)
T 1pby_B          280 HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred             CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence            2233456667777888889999999999987644

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.84  E-value=6.2e-19  Score=181.69  Aligned_cols=239  Identities=10%  Similarity=0.037  Sum_probs=171.8

Q ss_pred             cHHHhhhhhccc-cccEEEEEEccCCCEEEEEeC-CCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeC---
Q 009993          130 SWKELIDVLYGH-TEAVLTVFVLASAKLLFTSGY-DSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGT---  202 (520)
Q Consensus       130 ~W~~~~~~l~~h-~~~V~~l~~~~~~~~l~sgs~-dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~---  202 (520)
                      .|.++++.++.+ ..+|++++|+|||+.||+++. ||+++||++.+++.......+...+..+.  |+ +.+++++.   
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g   86 (582)
T 3o4h_A            8 EFSRIVRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKG   86 (582)
T ss_dssp             CHHHHHHHHHHHHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTT
T ss_pred             cHHHHHHHHHHHhccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCC
Confidence            377777777654 678999999999999999887 99999999976665443333334565554  67 67777765   


Q ss_pred             CCcEEEEEccc--CcceeeeccCCccccceEEec-cCCCCeEEEEEcCC-EEEEEecCCeEEEEECCCCcEEEEeeeccC
Q 009993          203 DGFIHCWRAVE--VLPHLFDISGSEKQNTQFRLW-EHEGPITSLALDLT-RIYSGSWDMTVRVWDRALLKCLKVLRHSDW  278 (520)
Q Consensus       203 dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~  278 (520)
                      +....+|.+..  ...            .. .+. .+...+.+++++++ .+++.+.++.+.+||+.+++......+...
T Consensus        87 ~~~~~l~~~~~~~~g~------------~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~  153 (582)
T 3o4h_A           87 AEQHALFKVNTSRPGE------------EQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGF  153 (582)
T ss_dssp             SCCEEEEEEETTSTTC------------CE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSC
T ss_pred             CcceEEEEEeccCCCc------------cc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCc
Confidence            45567776543  210            11 121 11222445566774 334444444555999999887766665554


Q ss_pred             EEEEeeCCCEEEEEc-C----CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCC--eEEEEEcccCccc
Q 009993          279 VYGLAPHDTTVASTS-G----SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG--AIHMYEIINDCTE  351 (520)
Q Consensus       279 v~~~~~~~~~l~~~~-d----~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg--~i~iwd~~~~~~~  351 (520)
                      -..++|+|+.++.++ +    ..|++||+.+++.. .+. .|.+.+..++|+|||+.|+++..++  .|++||+.++   
T Consensus       154 ~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~---  228 (582)
T 3o4h_A          154 GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFD-SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG---  228 (582)
T ss_dssp             EEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EEC-CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC---
T ss_pred             eEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eee-cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC---
Confidence            455669999999776 5    67999999988765 343 5888899999999999999888898  8999999887   


Q ss_pred             cceeeeeeecCCcCCEEEEE--------ecC--CEEEEEeCCCcEEEEeC
Q 009993          352 ANVLLVATWIPHTGPVNSLA--------FEF--PWLVSAAGDGKLSLIDV  391 (520)
Q Consensus       352 ~~~~~~~~~~~h~~~v~~l~--------~~~--~~l~s~s~dg~i~vwd~  391 (520)
                         ... .+.+|...+..+.        |+|  ..+++++.||.+++|++
T Consensus       229 ---~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          229 ---SVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             ---CEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             ---cEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence               334 5667776666666        876  58899999999999999

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.83  E-value=1.7e-18  Score=190.32  Aligned_cols=241  Identities=10%  Similarity=0.022  Sum_probs=186.9

Q ss_pred             CcccHH-----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCC-------------CceEE
Q 009993          127 DDKSWK-----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPL-------------GCTIR  188 (520)
Q Consensus       127 ~~~~W~-----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~-------------~~~v~  188 (520)
                      ...+|.     ...+.+.+|. .+...+|+|+|++|+++. ++.|.+|++.... +..+..+             ...-.
T Consensus       225 ~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~  301 (1045)
T 1k32_A          225 FGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAE  301 (1045)
T ss_dssp             SCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEE
T ss_pred             ceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCccccccccccccccccee
Confidence            346675     2244555665 466779999999998885 8999999995443 3355542             24556


Q ss_pred             EEe-cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCC-CeEEEEE-cCCEEEEEecCCeEE-EEEC
Q 009993          189 AVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEG-PITSLAL-DLTRIYSGSWDMTVR-VWDR  264 (520)
Q Consensus       189 ~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~-~~~~l~s~s~dg~v~-iwd~  264 (520)
                      +++ |+|+.|++++ ++.|.+|++.++.              ...+..|.. .+..++| +++.+++++.++.+. +||+
T Consensus       302 ~~S~pdG~~la~~~-~~~i~~~~~~~~~--------------~~~~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~  366 (1045)
T 1k32_A          302 DFSPLDGDLIAFVS-RGQAFIQDVSGTY--------------VLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDY  366 (1045)
T ss_dssp             EEEECGGGCEEEEE-TTEEEEECTTSSB--------------EEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEET
T ss_pred             eecCCCCCEEEEEE-cCEEEEEcCCCCc--------------eEEccCCCcceEEeeeEcCCCeEEEEECCCceEEEEEC
Confidence            889 9999999888 7899999986652              233456666 7888888 566788888888898 9999


Q ss_pred             CCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCC---
Q 009993          265 ALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG---  338 (520)
Q Consensus       265 ~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg---  338 (520)
                      .+++......+...+..+.  |+++.+++++ ++.|++||+.+++...... +|.+.+..++|+|||++|++++.++   
T Consensus       367 ~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~-~~~~~v~~~~~SpDG~~la~~~~~~~~~  445 (1045)
T 1k32_A          367 RTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-SREAMITDFTISDNSRFIAYGFPLKHGE  445 (1045)
T ss_dssp             TTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCCEEECTTSCEEEEEEEECSST
T ss_pred             CCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc-CCCCCccceEECCCCCeEEEEecCcccc
Confidence            8877654444656677665  8999999888 8999999999998777665 5888899999999999998887654   


Q ss_pred             -------eEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993          339 -------AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       339 -------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  393 (520)
                             .|++||+.++      . ...+..|...+..++|+|  ++|+.++.++...+|+...
T Consensus       446 ~~~~~~~~i~l~d~~~g------~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~  502 (1045)
T 1k32_A          446 TDGYVMQAIHVYDMEGR------K-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV  502 (1045)
T ss_dssp             TCSCCEEEEEEEETTTT------E-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             ccCCCCCeEEEEECCCC------c-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence                   8999999887      4 556777888899999975  6899999988888898654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.83  E-value=2.7e-18  Score=164.18  Aligned_cols=270  Identities=12%  Similarity=0.140  Sum_probs=168.7

Q ss_pred             EEEEEeCCCeEEEEECC-CC--cEEEEeC-CCCceEEEEecCCCEEEEEeCC-CcEEEEEcc--cCcceeeeccCCcccc
Q 009993          156 LLFTSGYDSIVRMWHLE-DG--FSIASSK-PLGCTIRAVAADKKLLVAGGTD-GFIHCWRAV--EVLPHLFDISGSEKQN  228 (520)
Q Consensus       156 ~l~sgs~dg~v~vwd~~-~~--~~~~~~~-~~~~~v~~~~~~~~~l~sg~~d-g~i~vwd~~--~~~~~~~~~~~~~~~~  228 (520)
                      ++++++.|+.|++|++. ++  +.+..+. .......+++|++++|++++.+ +.|.+|++.  ++.           ..
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~-----------~~   75 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA-----------LT   75 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC-----------EE
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCc-----------ee
Confidence            34455789999999995 33  2333332 2233345677999999988887 999999986  332           11


Q ss_pred             ceEEeccCCCCeEEEEE--cCCEEEEEec-CCeEEEEECC---CCcEEEEeeeccCEEE--EeeCCCEEEEEc--CCeEE
Q 009993          229 TQFRLWEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDRA---LLKCLKVLRHSDWVYG--LAPHDTTVASTS--GSDVY  298 (520)
Q Consensus       229 ~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg~v~iwd~~---~~~~~~~~~~~~~v~~--~~~~~~~l~~~~--d~~i~  298 (520)
                      ....+..+. .+..++|  +++++++++. ++.|.+||+.   +.+....+.....+.+  +.++++.+++++  ++.|+
T Consensus        76 ~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~  154 (343)
T 1ri6_A           76 FAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRIC  154 (343)
T ss_dssp             EEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEE
T ss_pred             eccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEE
Confidence            222333333 7788888  6677766654 8899999994   4444455544444554  448888777665  79999


Q ss_pred             EEECCC-CeeeE----EeecccccceEEEEecCCCCEEEEE-eCCCeEEEEEcccCcccc-ceeeeeeecCC---cCCEE
Q 009993          299 IWDTNS-GCLLT----VVNGAHVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDCTEA-NVLLVATWIPH---TGPVN  368 (520)
Q Consensus       299 iwd~~~-~~~~~----~~~~~~~~~i~~l~~s~~~~~l~tg-~~dg~i~iwd~~~~~~~~-~~~~~~~~~~h---~~~v~  368 (520)
                      +||+.+ ++...    .+.......+..++|+|++++++++ ..++.|.+|++....... .......+...   ...+.
T Consensus       155 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  234 (343)
T 1ri6_A          155 LFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAA  234 (343)
T ss_dssp             EEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEE
T ss_pred             EEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCcc
Confidence            999987 64432    2222234578899999999977655 478999999996421100 01112212111   34677


Q ss_pred             EEEecC--CEEE-EEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEec-CCCe
Q 009993          369 SLAFEF--PWLV-SAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGG-EEGI  444 (520)
Q Consensus       369 ~l~~~~--~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~-~Dg~  444 (520)
                      .++|+|  ++|+ ++..++.|.+||+.....        ....+..+      ..+......++++++++|++++ .|+.
T Consensus       235 ~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~--------~~~~~~~~------~~~~~~~~~~~s~dg~~l~~~~~~~~~  300 (343)
T 1ri6_A          235 DIHITPDGRHLYACDRTASLITVFSVSEDGS--------VLSKEGFQ------PTETQPRGFNVDHSGKYLIAAGQKSHH  300 (343)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSC--------CEEEEEEE------ECSSSCCCEEECTTSSEEEEECTTTCE
T ss_pred             ceEECCCCCEEEEEecCCCEEEEEEEcCCCC--------ceEEeeee------cCCCccceEEECCCCCEEEEecCCCCe
Confidence            899976  4666 555799999999973100        00000000      0111133456667777666666 6899


Q ss_pred             EEEEeCC
Q 009993          445 VRIWNFS  451 (520)
Q Consensus       445 v~iwd~~  451 (520)
                      |.+|++.
T Consensus       301 v~v~~~d  307 (343)
T 1ri6_A          301 ISVYEIV  307 (343)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEc
Confidence            9999664

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.82  E-value=3.4e-18  Score=180.40  Aligned_cols=283  Identities=11%  Similarity=0.029  Sum_probs=183.8

Q ss_pred             ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCc--eEEEEecCCCEEEEEeCCCcEEEEEccc-----Cc
Q 009993          143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC--TIRAVAADKKLLVAGGTDGFIHCWRAVE-----VL  215 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~l~sg~~dg~i~vwd~~~-----~~  215 (520)
                      ..|.+++|+|| +.++.+. |+.|++||+.+++...... +..  .-.+++|+|+.|+++ .|+.|++||+.+     +.
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~  157 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLFD-TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR  157 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEEC-CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEccC-CcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence            56999999999 6555554 5999999999887654433 222  234678999999985 679999999987     54


Q ss_pred             ceeeeccCCccc-cceEEeccCCCCeEEEEE--cCCEEEEEe---------------------------------cCCeE
Q 009993          216 PHLFDISGSEKQ-NTQFRLWEHEGPITSLAL--DLTRIYSGS---------------------------------WDMTV  259 (520)
Q Consensus       216 ~~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~--~~~~l~s~s---------------------------------~dg~v  259 (520)
                      ............ ........+...+.++.|  |+++|++++                                 .+..|
T Consensus       158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l  237 (706)
T 2z3z_A          158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV  237 (706)
T ss_dssp             CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred             cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence            221100000000 000000111223578888  788999887                                 44689


Q ss_pred             EEEECCCCcEEEEee---eccCEEEEe--eCCCEEEEEc-CC-----eEEEEECCCCeeeEEee-ccccc---ceEEEEe
Q 009993          260 RVWDRALLKCLKVLR---HSDWVYGLA--PHDTTVASTS-GS-----DVYIWDTNSGCLLTVVN-GAHVG---NTKSLAR  324 (520)
Q Consensus       260 ~iwd~~~~~~~~~~~---~~~~v~~~~--~~~~~l~~~~-d~-----~i~iwd~~~~~~~~~~~-~~~~~---~i~~l~~  324 (520)
                      ++||+.+++......   +...+.++.  |+++.+++++ ++     .|++||+.+++....+. ..+..   .+..++|
T Consensus       238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~  317 (706)
T 2z3z_A          238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTF  317 (706)
T ss_dssp             EEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEE
T ss_pred             EEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCcee
Confidence            999999988665542   445666665  8999888876 64     89999999984333332 11222   2467899


Q ss_pred             cC--CCCEEEEEeCCCeEEEEEcc-cCccccceeeeeeecCCcCCEEE-EEecC--CEEEEE-eCCC----cEEEEeCCc
Q 009993          325 SH--TGDFLFTGGEDGAIHMYEII-NDCTEANVLLVATWIPHTGPVNS-LAFEF--PWLVSA-AGDG----KLSLIDVRK  393 (520)
Q Consensus       325 s~--~~~~l~tg~~dg~i~iwd~~-~~~~~~~~~~~~~~~~h~~~v~~-l~~~~--~~l~s~-s~dg----~i~vwd~~~  393 (520)
                      +|  +|+++++++.||.+++|++. ++      ..+..+..|...+.. ++|+|  +.|+.+ +.++    .|..||+.+
T Consensus       318 sp~~dg~~l~~~~~~g~~~l~~~~~~~------~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~  391 (706)
T 2z3z_A          318 LPGSNNQFIWQSRRDGWNHLYLYDTTG------RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG  391 (706)
T ss_dssp             CTTCSSEEEEEECTTSSCEEEEEETTS------CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred             ecCCCCEEEEEEccCCccEEEEEECCC------CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence            99  99999999999999999987 33      445666778778877 78976  455544 4444    566666655


Q ss_pred             ccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCC----CeEEEEeCCchH
Q 009993          394 LLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEE----GIVRIWNFSQAF  454 (520)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~D----g~v~iwd~~~~~  454 (520)
                      +.                   .....+.......++++++++++.+..+    +.|++||+.++.
T Consensus       392 ~~-------------------~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          392 GK-------------------TKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             CC-------------------CEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             CC-------------------ceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            31                   0111111222334566667766655433    569999998764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.81  E-value=3.2e-18  Score=159.77  Aligned_cols=230  Identities=11%  Similarity=0.036  Sum_probs=167.5

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCC-CcEEEEeCCCC-ceE--EEEecCCCEEEEEe--CCCcEEE
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED-GFSIASSKPLG-CTI--RAVAADKKLLVAGG--TDGFIHC  208 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~-~~~~~~~~~~~-~~v--~~~~~~~~~l~sg~--~dg~i~v  208 (520)
                      ...+..|.+.|.+++|+|+|++|++++ ++.|.+||+.+ ++.......+. ..+  .+++|++++|++++  .++...+
T Consensus        34 ~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l  112 (297)
T 2ojh_A           34 MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAI  112 (297)
T ss_dssp             EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEE
T ss_pred             eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceE
Confidence            345677999999999999999999987 78999999999 87776665553 333  56779999999998  4456666


Q ss_pred             EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEE-EEecCCeEEEEEC--CCCcEEEEeeeccCEEEEe
Q 009993          209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIY-SGSWDMTVRVWDR--ALLKCLKVLRHSDWVYGLA  283 (520)
Q Consensus       209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~-s~s~dg~v~iwd~--~~~~~~~~~~~~~~v~~~~  283 (520)
                      |.+....            .....+.. ...+..++|  ++++++ +++.|+.+++|++  .+++......+...+.++.
T Consensus       113 ~~~~~~~------------~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  179 (297)
T 2ojh_A          113 YLLPSTG------------GTPRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPD  179 (297)
T ss_dssp             EEEETTC------------CCCEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEE
T ss_pred             EEEECCC------------CceEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccce
Confidence            6653221            01222323 334888888  667766 7889999999985  4455444444677777776


Q ss_pred             --eCCCEEEEEc--CCeEEEEECC-CCeeeEEeecccccceEEEEecCCCCEEEEEeCC-----------CeEEEEEccc
Q 009993          284 --PHDTTVASTS--GSDVYIWDTN-SGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-----------GAIHMYEIIN  347 (520)
Q Consensus       284 --~~~~~l~~~~--d~~i~iwd~~-~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d-----------g~i~iwd~~~  347 (520)
                        ++++.++.++  ++.+.+|++. .+..+..+. .|...+..++|+|++++|++++.+           +.|++||+.+
T Consensus       180 ~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~  258 (297)
T 2ojh_A          180 YSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT-DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG  258 (297)
T ss_dssp             ECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC-CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred             ECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe-cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC
Confidence              7888777654  7888999876 445555554 477889999999999999888766           5699999987


Q ss_pred             CccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCC
Q 009993          348 DCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD  383 (520)
Q Consensus       348 ~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d  383 (520)
                      +..    ..+..+.+|...+.+++|+|  ++|++++.|
T Consensus       259 ~~~----~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          259 GNV----ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             CSC----EEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             CCc----eeeeccCCCCcccccceECCCCCEEEEEEec
Confidence            732    33445557888899999976  577777655

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.81  E-value=7.5e-18  Score=166.18  Aligned_cols=215  Identities=19%  Similarity=0.222  Sum_probs=149.7

Q ss_pred             CeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccc----cceEEeccCCCC
Q 009993          164 SIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQ----NTQFRLWEHEGP  239 (520)
Q Consensus       164 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~  239 (520)
                      +.+++|+....     +........++++++.++++++.|+ +++|+.......  ........    ........+...
T Consensus        23 ~~vri~~~~~~-----~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   94 (434)
T 2oit_A           23 KKVRIFDSPEE-----LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ--NKPGDDPNKIVDKVQGLLVPMKFP   94 (434)
T ss_dssp             CEEECSCCCSS-----CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC--CCTTCCTTCEEECCCCEEECCSSC
T ss_pred             eeEEecCCccc-----cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh--cccccCcccccccCccccccCCCc
Confidence            46788764311     2233456677888889999998887 888876432110  00000000    001112346778


Q ss_pred             eEEEEE--cCCEEE----EEecCCeEEEEECCCC--------cE---EEEee-eccCEEEEe--eC-CCEEEEEc-CCeE
Q 009993          240 ITSLAL--DLTRIY----SGSWDMTVRVWDRALL--------KC---LKVLR-HSDWVYGLA--PH-DTTVASTS-GSDV  297 (520)
Q Consensus       240 v~~l~~--~~~~l~----s~s~dg~v~iwd~~~~--------~~---~~~~~-~~~~v~~~~--~~-~~~l~~~~-d~~i  297 (520)
                      |.+++|  ++++|+    +|+.|++|++||+.++        +.   +..+. |...|.++.  |+ +.++++++ |++|
T Consensus        95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v  174 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI  174 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred             ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence            999999  678888    7889999999998765        22   23333 789999988  55 77899888 9999


Q ss_pred             EEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec-------CCcCCEEEE
Q 009993          298 YIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI-------PHTGPVNSL  370 (520)
Q Consensus       298 ~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~h~~~v~~l  370 (520)
                      ++||++++..+.... +|...|++++|+|+|++|++|+.||.|++||++ +.      ....+.       .|...|.++
T Consensus       175 ~iwD~~~~~~~~~~~-~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~------~~~~~~~~~~~~~~~~~~v~~v  246 (434)
T 2oit_A          175 AVLQVTETVKVCATL-PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ------EKKVIPCPPFYESDHPVRVLDV  246 (434)
T ss_dssp             EEEEESSSEEEEEEE-CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC------EEEEECCCTTCCTTSCEEEEEE
T ss_pred             EEEEcCCCcceeecc-CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc------ccccccCCcccCCCCceeEEEE
Confidence            999999987765554 589999999999999999999999999999998 31      222222       234489999


Q ss_pred             EecCC--EEE-EEeCCCc------EEEEeCCcc
Q 009993          371 AFEFP--WLV-SAAGDGK------LSLIDVRKL  394 (520)
Q Consensus       371 ~~~~~--~l~-s~s~dg~------i~vwd~~~~  394 (520)
                      .|+++  +++ .++.||.      +++|++++.
T Consensus       247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            99764  332 2444543      899999864

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.80  E-value=2.9e-17  Score=157.69  Aligned_cols=257  Identities=12%  Similarity=0.062  Sum_probs=179.7

Q ss_pred             EEEEecCCCEEEEEeC-------CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEE-EEecC
Q 009993          187 IRAVAADKKLLVAGGT-------DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIY-SGSWD  256 (520)
Q Consensus       187 v~~~~~~~~~l~sg~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~-s~s~d  256 (520)
                      -.+++++++.+++++.       ++.|.+||..++.             ....+. ....+..+++  ++++++ +...+
T Consensus        45 ~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~-------------~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~  110 (353)
T 3vgz_A           45 EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE-------------VTQAIH-NDLKPFGATINNTTQTLWFGNTVN  110 (353)
T ss_dssp             EEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC-------------EEEEEE-ESSCCCSEEEETTTTEEEEEETTT
T ss_pred             ceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe-------------EEEEEe-cCCCcceEEECCCCCEEEEEecCC
Confidence            4567799998888874       5689999987763             122222 2334566777  667554 55567


Q ss_pred             CeEEEEECCCCcEEEEeeecc----------CEEEE--eeCCCEEEEEc---CCeEEEEECCCCeeeEEeecccccceEE
Q 009993          257 MTVRVWDRALLKCLKVLRHSD----------WVYGL--APHDTTVASTS---GSDVYIWDTNSGCLLTVVNGAHVGNTKS  321 (520)
Q Consensus       257 g~v~iwd~~~~~~~~~~~~~~----------~v~~~--~~~~~~l~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~i~~  321 (520)
                      +.|.+||..+++.+..+....          .+.++  +++++.++++.   ++.|.+||+.+++.+..+. .+...+..
T Consensus       111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~  189 (353)
T 3vgz_A          111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ-NTGKMSTG  189 (353)
T ss_dssp             TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC-CCCTTCCC
T ss_pred             CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec-CCCCccce
Confidence            999999999999888876321          14444  48888777665   6889999999999888875 25556888


Q ss_pred             EEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec----CCcCCEEEEEecC--CEEEEEe-CCCcEEEEeCCcc
Q 009993          322 LARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI----PHTGPVNSLAFEF--PWLVSAA-GDGKLSLIDVRKL  394 (520)
Q Consensus       322 l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~----~h~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~~~  394 (520)
                      ++|+|+++++++++.++.|.+||+.++      .....+.    ++...+.+++|+|  +++++++ .++.|.+||+.++
T Consensus       190 ~~~s~dg~~l~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~  263 (353)
T 3vgz_A          190 LALDSEGKRLYTTNADGELITIDTADN------KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG  263 (353)
T ss_dssp             CEEETTTTEEEEECTTSEEEEEETTTT------EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCC------eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            999999999999999999999999888      3444433    2556788899975  5565555 4599999999874


Q ss_pred             cccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhh
Q 009993          395 LRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMR  473 (520)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  473 (520)
                      ....                   .+........+++++++ .+++...++.|.+||..+++.+...       .    ..
T Consensus       264 ~~~~-------------------~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~-------~----~~  313 (353)
T 3vgz_A          264 NILA-------------------KVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF-------D----TP  313 (353)
T ss_dssp             CEEE-------------------EEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-------E----CC
T ss_pred             cEEE-------------------EEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE-------e----cC
Confidence            2211                   11111123467778888 5555667999999999877543221       0    11


Q ss_pred             hccceeeeccCCCcccccccc
Q 009993          474 RRKLQTEMSSKGGRTDQCSVA  494 (520)
Q Consensus       474 ~~~~~~~~s~~g~~~~~~s~~  494 (520)
                      ..+..++|+|||+.+..+...
T Consensus       314 ~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          314 THPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             SEEEEEEECTTSCEEEEEEEC
T ss_pred             CCCCeEEEcCCCCEEEEEEcc
Confidence            246789999999987775543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.80  E-value=1.2e-17  Score=155.92  Aligned_cols=248  Identities=12%  Similarity=0.054  Sum_probs=169.5

Q ss_pred             EEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCC-CcEEEEee-
Q 009993          199 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL-LKCLKVLR-  274 (520)
Q Consensus       199 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~-  274 (520)
                      .++.|+.|++||+.++.              ...+..|...|.+++|  +++++++++ ++.|++||+.+ ++...... 
T Consensus        17 ~~~~~~~i~~~d~~~~~--------------~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~   81 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRK--------------MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG   81 (297)
T ss_dssp             -CCCCEEEEEEETTTTE--------------EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT
T ss_pred             CCCcceeEEEEeCCCCc--------------eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc
Confidence            34678999999987752              3345568899999999  778888876 78999999999 87766554 


Q ss_pred             e-ccCEEE--EeeCCCEEEEEc-C----CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEE-EEeCCCeEEEEEc
Q 009993          275 H-SDWVYG--LAPHDTTVASTS-G----SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLF-TGGEDGAIHMYEI  345 (520)
Q Consensus       275 ~-~~~v~~--~~~~~~~l~~~~-d----~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~-tg~~dg~i~iwd~  345 (520)
                      + ...+.+  ++++++.++++. +    ..|..++..++. ...+.  +...+..++|+|+++.|+ +++.|+.+++|++
T Consensus        82 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~  158 (297)
T 2ojh_A           82 FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMT--KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSM  158 (297)
T ss_dssp             TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECC--SSSSEEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred             cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEee--cCCCccceEECCCCCEEEEEECCCCceEEEEE
Confidence            2 244544  458999998887 2    345566666655 33343  334588999999999877 7888999999997


Q ss_pred             ccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEe-CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCc
Q 009993          346 INDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAA-GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF  422 (520)
Q Consensus       346 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (520)
                      +...     .....+..|...+.++.|+|  ++|+.++ .++.+++|++...                  ......+..+
T Consensus       159 ~~~~-----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~------------------~~~~~~~~~~  215 (297)
T 2ojh_A          159 DIDS-----GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVD------------------GSSVERITDS  215 (297)
T ss_dssp             ETTT-----CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT------------------SSCEEECCCC
T ss_pred             ECCC-----CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCC------------------CCCcEEEecC
Confidence            5432     23455667888999999976  5666655 5999999998632                  1111223334


Q ss_pred             ceeeE--EEEecCCEEEEecCC-----------CeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccc
Q 009993          423 ECNLL--SVDIGADRIVCGGEE-----------GIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTD  489 (520)
Q Consensus       423 ~~~v~--~~~~~~~~l~sg~~D-----------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~  489 (520)
                      ...+.  ++++++++|++++.+           +.|++||+.++....        .............++|+|||++++
T Consensus       216 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------~~~~~~~~~~~~~~~~spdg~~l~  287 (297)
T 2ojh_A          216 AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVET--------LFDLFGGQGTMNSPNWSPDGDEFA  287 (297)
T ss_dssp             SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEE--------EEEEEESTTTSCSCCBCTTSSEEE
T ss_pred             CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCcee--------eeccCCCCcccccceECCCCCEEE
Confidence            44444  445566688877765           569999998753210        001111223467789999999998


Q ss_pred             cccccc
Q 009993          490 QCSVAA  495 (520)
Q Consensus       490 ~~s~~~  495 (520)
                      .++-+.
T Consensus       288 ~~~~~~  293 (297)
T 2ojh_A          288 YVRYFP  293 (297)
T ss_dssp             EEEECC
T ss_pred             EEEecc
Confidence            887543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.80  E-value=4e-18  Score=179.86  Aligned_cols=294  Identities=13%  Similarity=0.068  Sum_probs=187.4

Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEECCCCcEE-EEeCCC-------------------CceEEEEecCCCEEEEEeCCC
Q 009993          145 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI-ASSKPL-------------------GCTIRAVAADKKLLVAGGTDG  204 (520)
Q Consensus       145 V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~-~~~~~~-------------------~~~v~~~~~~~~~l~sg~~dg  204 (520)
                      +..+.|.  |+.+++++.|+ | +||+.+++.+ ..+..+                   .....+++|+ ..++.+ .++
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~  101 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQG  101 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETT
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECC
Confidence            3446677  66777788888 8 9999999873 333222                   1233455688 665555 359


Q ss_pred             cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCC-----CcEEEEee-ec
Q 009993          205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL-----LKCLKVLR-HS  276 (520)
Q Consensus       205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~-----~~~~~~~~-~~  276 (520)
                      .|++||+.++.              ...+..+...+.+++|  ++++|+++ .|+.|++||+.+     ++...... +.
T Consensus       102 ~i~~~d~~~~~--------------~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~  166 (706)
T 2z3z_A          102 GLVGFDMLARK--------------VTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGT  166 (706)
T ss_dssp             EEEEEETTTTE--------------EEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCB
T ss_pred             EEEEEECCCCc--------------eEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCC
Confidence            99999997752              2334456667888888  77888885 689999999998     77665443 22


Q ss_pred             c----------------CEEEEeeCCCEEEEEc----------------------------------CCeEEEEECCCCe
Q 009993          277 D----------------WVYGLAPHDTTVASTS----------------------------------GSDVYIWDTNSGC  306 (520)
Q Consensus       277 ~----------------~v~~~~~~~~~l~~~~----------------------------------d~~i~iwd~~~~~  306 (520)
                      .                .-..++|+++.|++++                                  +..|++||+.+++
T Consensus       167 ~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~  246 (706)
T 2z3z_A          167 ETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK  246 (706)
T ss_dssp             TTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE
T ss_pred             CCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc
Confidence            2                2234559999998875                                  2569999999987


Q ss_pred             eeEEeec-ccccceEEEEecCCCCEEEEEeCCC-----eEEEEEcccCccccceeeeeeecCCc---CCEEEEEecC---
Q 009993          307 LLTVVNG-AHVGNTKSLARSHTGDFLFTGGEDG-----AIHMYEIINDCTEANVLLVATWIPHT---GPVNSLAFEF---  374 (520)
Q Consensus       307 ~~~~~~~-~~~~~i~~l~~s~~~~~l~tg~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~~---  374 (520)
                      ....... .|...+.+++|+|||++|++++.++     .|++||+.++...   ..+.. ..+.   ..+.++.|+|   
T Consensus       247 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~---~~~~~-~~~~~~~~~~~~~~~sp~~d  322 (706)
T 2z3z_A          247 TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFV---RTLFV-ETDKHYVEPLHPLTFLPGSN  322 (706)
T ss_dssp             EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEE---EEEEE-EECSSCCCCCSCCEECTTCS
T ss_pred             eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCcee---eEEEE-ccCCCeECccCCceeecCCC
Confidence            6544422 4667899999999999999887775     8999999887211   11111 1122   2346678865   


Q ss_pred             -CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceee---EEEEecCCEE-EEecCCC----eE
Q 009993          375 -PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL---LSVDIGADRI-VCGGEEG----IV  445 (520)
Q Consensus       375 -~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~l-~sg~~Dg----~v  445 (520)
                       +++++++.||.++||++...                  ......+..+...+   .+++++++.| ++++.++    .|
T Consensus       323 g~~l~~~~~~g~~~l~~~~~~------------------~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l  384 (706)
T 2z3z_A          323 NQFIWQSRRDGWNHLYLYDTT------------------GRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHF  384 (706)
T ss_dssp             SEEEEEECTTSSCEEEEEETT------------------SCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEE
T ss_pred             CEEEEEEccCCccEEEEEECC------------------CCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEE
Confidence             48888889999999987621                  11111222333333   4566677755 4555555    66


Q ss_pred             EEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccccccc
Q 009993          446 RIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSV  493 (520)
Q Consensus       446 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~  493 (520)
                      ..||+.++.. .       ...    .......++|+|||++++....
T Consensus       385 ~~~d~~~~~~-~-------~l~----~~~~~~~~~~spdg~~l~~~~~  420 (706)
T 2z3z_A          385 YCIDIKGGKT-K-------DLT----PESGMHRTQLSPDGSAIIDIFQ  420 (706)
T ss_dssp             EEEETTCCCC-E-------ESC----CSSSEEEEEECTTSSEEEEEEE
T ss_pred             EEEEcCCCCc-e-------ecc----CCCceEEEEECCCCCEEEEEec
Confidence            7777765431 1       111    1123567899999999887643

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.79  E-value=3.8e-17  Score=155.58  Aligned_cols=276  Identities=9%  Similarity=0.002  Sum_probs=175.6

Q ss_pred             CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec-CCeEEEEECCCCcE-
Q 009993          194 KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDRALLKC-  269 (520)
Q Consensus       194 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg~v~iwd~~~~~~-  269 (520)
                      +..+++++.++.|.+||..++.             ....+..+...+ .+++  +++++++++. ++.|.+||..+++. 
T Consensus        10 ~~~~v~~~~~~~v~~~d~~~~~-------------~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~   75 (331)
T 3u4y_A           10 NFGIVVEQHLRRISFFSTDTLE-------------ILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK   75 (331)
T ss_dssp             CEEEEEEGGGTEEEEEETTTCC-------------EEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE
T ss_pred             CEEEEEecCCCeEEEEeCcccc-------------eeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee
Confidence            3457788889999999998764             222333445555 8888  6776666665 89999999999987 


Q ss_pred             EEEee-eccCEE--EEeeCCCEEEEEcCC----eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEE-EEeCCCe-E
Q 009993          270 LKVLR-HSDWVY--GLAPHDTTVASTSGS----DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLF-TGGEDGA-I  340 (520)
Q Consensus       270 ~~~~~-~~~~v~--~~~~~~~~l~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~-tg~~dg~-i  340 (520)
                      ...+. +..+..  .+++++++++++.++    .|.+||+.+++.+..+.  ......+++|+|+|++++ ++..++. |
T Consensus        76 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~i  153 (331)
T 3u4y_A           76 VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSSANTV  153 (331)
T ss_dssp             EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETTTTEE
T ss_pred             EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCCCceE
Confidence            66665 333333  455999999866543    89999999999888775  345578999999998555 4556688 9


Q ss_pred             EEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEE-EEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcc
Q 009993          341 HMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWL-VSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQR  417 (520)
Q Consensus       341 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (520)
                      .+|++.......... ...+ .....+..++|+|  +++ +++..++.|.+||+.++...         ..+..      
T Consensus       154 ~~~~~~~~g~~~~~~-~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~---------~~~~~------  216 (331)
T 3u4y_A          154 RRFKIDADGVLFDTG-QEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI---------TLLNA------  216 (331)
T ss_dssp             EEEEECTTCCEEEEE-EEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC---------EEEEE------
T ss_pred             EEEEECCCCcEeecC-Cccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc---------ceeee------
Confidence            999998653221111 1222 3445689999976  445 45556899999999864320         00000      


Q ss_pred             cccCcceeeEEEEecCCEE-EEecCCCeEEEEeCCchHh--HHHHhhhhcccccchhhhhccceeeeccCCCcccccccc
Q 009993          418 MLHGFECNLLSVDIGADRI-VCGGEEGIVRIWNFSQAFE--IERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA  494 (520)
Q Consensus       418 ~~~~~~~~v~~~~~~~~~l-~sg~~Dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~  494 (520)
                      ...+....-.+++++++++ ++...++.|.+||..+++.  +...   ................++|+|||+++..++. 
T Consensus       217 ~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~-  292 (331)
T 3u4y_A          217 VGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSF---GHGLLIDPRPLFGANQMALNKTETKLFISAN-  292 (331)
T ss_dssp             EECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEE---ECCCCCCCGGGTTCCCEEECTTSSEEEEEET-
T ss_pred             ccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccc---ccccccCCCCcccccceEECCCCCEEEEecC-
Confidence            0111223345677778755 4555688999999987654  1100   0111111111112245799999999876553 


Q ss_pred             cccCCCCCCcceeeeccc
Q 009993          495 AKKNPMNGNRRSVWHNKR  512 (520)
Q Consensus       495 ~~~~~~~~~~~~~~~~~~  512 (520)
                            ++....+|....
T Consensus       293 ------~~~~v~v~d~~~  304 (331)
T 3u4y_A          293 ------ISRELKVFTISG  304 (331)
T ss_dssp             ------TTTEEEEEETTS
T ss_pred             ------CCCcEEEEEecC
Confidence                  223346666543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.79  E-value=5.1e-17  Score=155.26  Aligned_cols=239  Identities=12%  Similarity=0.146  Sum_probs=162.3

Q ss_pred             cccccEEEEEEccCCCEEEEEeCC-CeEEEEECC--CCc--EEEEeCCC-CceEEEEecCCCEEEEEeC-CCcEEEEEcc
Q 009993          140 GHTEAVLTVFVLASAKLLFTSGYD-SIVRMWHLE--DGF--SIASSKPL-GCTIRAVAADKKLLVAGGT-DGFIHCWRAV  212 (520)
Q Consensus       140 ~h~~~V~~l~~~~~~~~l~sgs~d-g~v~vwd~~--~~~--~~~~~~~~-~~~v~~~~~~~~~l~sg~~-dg~i~vwd~~  212 (520)
                      .|...+.+++|+|+|++|++++.+ +.|.+|++.  ++.  .+..+..+ .....+++++++++++++. ++.|.+||+.
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~  114 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE  114 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence            567788999999999999988886 999999997  554  33444332 3344567799998877665 8899999985


Q ss_pred             cCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEe-cCCeEEEEECCC-CcEEEE----ee--eccCEEEE
Q 009993          213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRAL-LKCLKV----LR--HSDWVYGL  282 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~v~iwd~~~-~~~~~~----~~--~~~~v~~~  282 (520)
                      ++..          ......+. ....+.+++|  +++++++++ .++.|.+||+.+ ++....    +.  ....+..+
T Consensus       115 ~~~~----------~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (343)
T 1ri6_A          115 DGLP----------VGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM  183 (343)
T ss_dssp             TTEE----------EEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEE
T ss_pred             CCcc----------cccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceE
Confidence            3210          11222232 3345788888  667788777 899999999987 654332    22  23355555


Q ss_pred             e--eCCCEEEEEc--CCeEEEEECCC--Cee--eEEee---ccc--ccceEEEEecCCCCEEEE-EeCCCeEEEEEcccC
Q 009993          283 A--PHDTTVASTS--GSDVYIWDTNS--GCL--LTVVN---GAH--VGNTKSLARSHTGDFLFT-GGEDGAIHMYEIIND  348 (520)
Q Consensus       283 ~--~~~~~l~~~~--d~~i~iwd~~~--~~~--~~~~~---~~~--~~~i~~l~~s~~~~~l~t-g~~dg~i~iwd~~~~  348 (520)
                      .  ++++++++++  ++.|.+||+..  ++.  ...+.   .++  ...+..++|+|++++|++ +..++.|.+||+...
T Consensus       184 ~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~  263 (343)
T 1ri6_A          184 VFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSED  263 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCC
Confidence            4  8888665544  79999999954  432  22222   111  235678999999998774 557999999999832


Q ss_pred             ccccceeeeeeecCCcCCEEEEEecC--CEEEEEe-CCCcEEEEeCC
Q 009993          349 CTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAA-GDGKLSLIDVR  392 (520)
Q Consensus       349 ~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~  392 (520)
                      ..  ....+..+..+.. +.+++|+|  ++|++++ .++.|.+|++.
T Consensus       264 ~~--~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          264 GS--VLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             SC--CEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             CC--ceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            10  1134444444444 88899976  5777777 68999999665

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.79  E-value=1.3e-17  Score=176.55  Aligned_cols=275  Identities=10%  Similarity=-0.023  Sum_probs=176.6

Q ss_pred             hhhhcCCCCCCCCCCCCCCCcccHH----Hhhhhhccccc---cEEEEEEccCCCEEEEEeCC---------CeEEEEEC
Q 009993          108 YCERWGLPIASAPLGAGFSDDKSWK----ELIDVLYGHTE---AVLTVFVLASAKLLFTSGYD---------SIVRMWHL  171 (520)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~W~----~~~~~l~~h~~---~V~~l~~~~~~~~l~sgs~d---------g~v~vwd~  171 (520)
                      ....|. |+..+...+.+...+.|+    +....+.+|..   .|.+++|+|||++|++++.+         +.+.+||+
T Consensus        20 ~~~~~s-pdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~   98 (723)
T 1xfd_A           20 PEAKWI-SDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI   98 (723)
T ss_dssp             CCCCBS-SSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred             cccEEc-CCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEEC
Confidence            345565 555544444445567787    33445566665   49999999999999999874         78889999


Q ss_pred             CCCcEEEEeC---CCCc--eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCC---------
Q 009993          172 EDGFSIASSK---PLGC--TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE---------  237 (520)
Q Consensus       172 ~~~~~~~~~~---~~~~--~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~---------  237 (520)
                      .+++. ..+.   .|..  .-.+++|+|+.|+.++. +.|++||+.++............  .  .+.++.         
T Consensus        99 ~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~--~--~~~g~~~~v~~ee~~  172 (723)
T 1xfd_A           99 PHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEG--V--IYNGLSDWLYEEEIL  172 (723)
T ss_dssp             SSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTT--T--EEEEECCHHHHHTTS
T ss_pred             CCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCC--c--eECcccceeEEEEec
Confidence            98875 2332   3332  23467799999999886 79999999876432111000000  0  000111         


Q ss_pred             CCeEEEEE--cCCEEEEEecCC----------------------------------eEEEEECCCCcEEEEee-e-----
Q 009993          238 GPITSLAL--DLTRIYSGSWDM----------------------------------TVRVWDRALLKCLKVLR-H-----  275 (520)
Q Consensus       238 ~~v~~l~~--~~~~l~s~s~dg----------------------------------~v~iwd~~~~~~~~~~~-~-----  275 (520)
                      +.+.+++|  |++.|++++.|+                                  .|++||+.+++....+. +     
T Consensus       173 ~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~  252 (723)
T 1xfd_A          173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRM  252 (723)
T ss_dssp             SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGG
T ss_pred             cCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCC
Confidence            13378889  788898887653                                  89999999888655554 2     


Q ss_pred             -ccCEEEEe--eCCCEEEEEc-C----CeEEEEECCCCeeeEEeecccccceE----EEEecCCCCEEEE--EeCCC---
Q 009993          276 -SDWVYGLA--PHDTTVASTS-G----SDVYIWDTNSGCLLTVVNGAHVGNTK----SLARSHTGDFLFT--GGEDG---  338 (520)
Q Consensus       276 -~~~v~~~~--~~~~~l~~~~-d----~~i~iwd~~~~~~~~~~~~~~~~~i~----~l~~s~~~~~l~t--g~~dg---  338 (520)
                       ...+..+.  |+++++++.. .    ..|++||+.+++....+...+...+.    .++|+|+|+.|+.  +..++   
T Consensus       253 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  332 (723)
T 1xfd_A          253 REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRG  332 (723)
T ss_dssp             SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSS
T ss_pred             ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCc
Confidence             44566555  8999887664 2    46999999999877665433344433    7899999997664  55677   


Q ss_pred             ---eEEEEEc-ccCccccceeeeeeecCCcCCEEE-EEecC--CEEEEEeCC---CcEEEEeCCc
Q 009993          339 ---AIHMYEI-INDCTEANVLLVATWIPHTGPVNS-LAFEF--PWLVSAAGD---GKLSLIDVRK  393 (520)
Q Consensus       339 ---~i~iwd~-~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~--~~l~s~s~d---g~i~vwd~~~  393 (520)
                         .|.+||+ .++..    .+...+..+...+.. ++|+|  +.|+..+.+   +.+++|++..
T Consensus       333 ~~~~l~~~d~~~~~~~----~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~  393 (723)
T 1xfd_A          333 KFYHITVSSSQPNSSN----DNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT  393 (723)
T ss_dssp             CEEEEEEECSSCCSSS----CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred             ceeEEEEEeccCCCCc----cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence               4566663 33310    013334333444554 68865  577655554   7899999874

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.78  E-value=2.4e-17  Score=157.98  Aligned_cols=259  Identities=14%  Similarity=0.076  Sum_probs=169.9

Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCC---ceEEEEecCCCEEE-EEeCCCcEEEEEcccCcceeeecc
Q 009993          147 TVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG---CTIRAVAADKKLLV-AGGTDGFIHCWRAVEVLPHLFDIS  222 (520)
Q Consensus       147 ~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~l~-sg~~dg~i~vwd~~~~~~~~~~~~  222 (520)
                      .+++++++.++++++.+++|.+||+.+++.+..+..+.   ..-.+++++++.++ ++..++.|.+||+.++..      
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~------   77 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN------   77 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE------
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE------
Confidence            45678889999999999999999999998887776443   44567789998665 555789999999977632      


Q ss_pred             CCccccceEEec-cC-----CCCeEEEEE--cCCEEEEEecC------------CeEEEEECCCCcE---EEEeeeccCE
Q 009993          223 GSEKQNTQFRLW-EH-----EGPITSLAL--DLTRIYSGSWD------------MTVRVWDRALLKC---LKVLRHSDWV  279 (520)
Q Consensus       223 ~~~~~~~~~~~~-~h-----~~~v~~l~~--~~~~l~s~s~d------------g~v~iwd~~~~~~---~~~~~~~~~v  279 (520)
                             ...+. .+     ...+..++|  +++++++++.+            +.|.+||+.+++.   +..+.+...+
T Consensus        78 -------~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  150 (349)
T 1jmx_B           78 -------TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQV  150 (349)
T ss_dssp             -------EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSC
T ss_pred             -------EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcc
Confidence                   11221 11     223667788  77889888865            8999999988543   3444444455


Q ss_pred             EEE--eeCCCEEEEEcCCeEEEEECCCCeeeEEeeccccc-----------------------ceEEEEecCCCCE----
Q 009993          280 YGL--APHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVG-----------------------NTKSLARSHTGDF----  330 (520)
Q Consensus       280 ~~~--~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----------------------~i~~l~~s~~~~~----  330 (520)
                      .++  .++++ ++++ ++.|.+||+.+++.+..+..+...                       ....+++++++..    
T Consensus       151 ~~~~~s~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  228 (349)
T 1jmx_B          151 YLMRAADDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT  228 (349)
T ss_dssp             CCEEECTTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred             cceeECCCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc
Confidence            554  48888 5554 344999999999887776532200                       3445666655421    


Q ss_pred             -------EEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcccccCCC
Q 009993          331 -------LFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRP  400 (520)
Q Consensus       331 -------l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~  400 (520)
                             +.....++.+.+|++               ..+...+.+++++|   ++++++  ++.|.+||+.++..... 
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~-  290 (349)
T 1jmx_B          229 ADLLYGYLSVDLKTGKTHTQEF---------------ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKA-  290 (349)
T ss_dssp             CEEEEEEEEEETTTCCEEEEEE---------------EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEE-
T ss_pred             cccceeEEEEeccCCcEEeccc---------------ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEE-
Confidence                   112223344444433               22455678888876   467766  88999999987422110 


Q ss_pred             CCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHh
Q 009993          401 TSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE  455 (520)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~  455 (520)
                                       ...++.....++++++++|++++.++.|++||..+++.
T Consensus       291 -----------------~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          291 -----------------ANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK  328 (349)
T ss_dssp             -----------------EECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred             -----------------EcCCCCccceEECCCCCEEEEecCCCeEEEEeccccce
Confidence                             01122333456677777788888899999999987643

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.78  E-value=3.2e-17  Score=173.91  Aligned_cols=277  Identities=12%  Similarity=-0.017  Sum_probs=184.6

Q ss_pred             cEEEEEEccCCCEEEEEeCCCeEEEEECCCCc--EEEEeCCCCceEE--EEecCCCEEEEEeCCCcEEEEEcccCcceee
Q 009993          144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIR--AVAADKKLLVAGGTDGFIHCWRAVEVLPHLF  219 (520)
Q Consensus       144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~--~~~~~~~~~~~v~--~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~  219 (520)
                      .|.+++|+|||++|++++. +.|.+||+.++.  ....+..+...+.  +++|+|++|++++. +.|.+||+.++.....
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQL  187 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEEC
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEe
Confidence            4889999999999999986 999999999883  3445555555444  56699999999874 6899999987642211


Q ss_pred             eccCCccccceEEeccC--------CCCeEEEEE--cCCEEEEEecCC--------------------------------
Q 009993          220 DISGSEKQNTQFRLWEH--------EGPITSLAL--DLTRIYSGSWDM--------------------------------  257 (520)
Q Consensus       220 ~~~~~~~~~~~~~~~~h--------~~~v~~l~~--~~~~l~s~s~dg--------------------------------  257 (520)
                      ......   .  ...++        ...+.++.|  |+++|++++.|+                                
T Consensus       188 ~~~~~~---~--~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~  262 (741)
T 2ecf_A          188 TADGST---T--IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ  262 (741)
T ss_dssp             CCCCCS---S--EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred             ccCCcc---c--eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence            100000   0  00000        112467888  788899888776                                


Q ss_pred             -eEEEEECCC-CcEEEEe---eeccCEEEEe-eCCCEEEEEc------CCeEEEEECCCCeeeEEeeccccc----ceEE
Q 009993          258 -TVRVWDRAL-LKCLKVL---RHSDWVYGLA-PHDTTVASTS------GSDVYIWDTNSGCLLTVVNGAHVG----NTKS  321 (520)
Q Consensus       258 -~v~iwd~~~-~~~~~~~---~~~~~v~~~~-~~~~~l~~~~------d~~i~iwd~~~~~~~~~~~~~~~~----~i~~  321 (520)
                       .|.+||+.+ ++.....   .+...+..+. ++++.|+.+.      +..|++||+.+++....+.. +..    .+..
T Consensus       263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~~~~~~  341 (741)
T 2ecf_A          263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE-TSPTWVPLHNS  341 (741)
T ss_dssp             EEEEEECSSTTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE-ECSSCCCCCSC
T ss_pred             eEEEEEECCCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc-CCCCcCCcCCc
Confidence             889999988 7765543   2444454433 9999888654      35699999999987766653 332    4468


Q ss_pred             EEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEE-EecC--CEE-EEEeCCC--cEEEEeCCccc
Q 009993          322 LARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL-AFEF--PWL-VSAAGDG--KLSLIDVRKLL  395 (520)
Q Consensus       322 l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l-~~~~--~~l-~s~s~dg--~i~vwd~~~~~  395 (520)
                      ++|+|+|+++++++.||.++||.+....     . ...+..|...|..+ .|+|  +.| ++++.++  .++||++....
T Consensus       342 ~~~spdg~~~~~~~~~g~~~l~~~~~~~-----~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g  415 (741)
T 2ecf_A          342 LRFLDDGSILWSSERTGFQHLYRIDSKG-----K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQG  415 (741)
T ss_dssp             CEECTTSCEEEEECTTSSCEEEEECSSS-----C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTC
T ss_pred             eEECCCCeEEEEecCCCccEEEEEcCCC-----C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCC
Confidence            8999999999999999999999886431     3 55666778888887 4876  455 4555565  89999986421


Q ss_pred             ccCCCCCCCceeeeeecCCCcccccC-cceeeEEEEecCCEEEEecCC----CeEEEEeCCc
Q 009993          396 RSGRPTSGKRVSRVIEVEPPQRMLHG-FECNLLSVDIGADRIVCGGEE----GIVRIWNFSQ  452 (520)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sg~~D----g~v~iwd~~~  452 (520)
                      .                  ....+.. ......++++++++|+....+    +.+.+|+...
T Consensus       416 ~------------------~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~  459 (741)
T 2ecf_A          416 G------------------QPQRLSKAPGMHSASFARNASVYVDSWSNNSTPPQIELFRANG  459 (741)
T ss_dssp             C------------------CCEECCCSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred             C------------------CeeecccCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence            0                  0011111 112344566667766554333    4688888754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.77  E-value=3.4e-17  Score=156.05  Aligned_cols=226  Identities=13%  Similarity=0.019  Sum_probs=165.6

Q ss_pred             cEEEEEEccCCCEE-EEEeCCCeEEEEECCCCcEEEEeCC-C------CceEEEEecCCCEEEEEe------------CC
Q 009993          144 AVLTVFVLASAKLL-FTSGYDSIVRMWHLEDGFSIASSKP-L------GCTIRAVAADKKLLVAGG------------TD  203 (520)
Q Consensus       144 ~V~~l~~~~~~~~l-~sgs~dg~v~vwd~~~~~~~~~~~~-~------~~~v~~~~~~~~~l~sg~------------~d  203 (520)
                      .+.+++|+|+|+++ ++++.++.|.+||+.+++.+..+.. +      .....+++++++.++++.            .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            47889999999765 4556689999999999988776652 2      233456789999998886            57


Q ss_pred             CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeecc--CE
Q 009993          204 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSD--WV  279 (520)
Q Consensus       204 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--~v  279 (520)
                      +.|.+||+.++.             ....+. ....+.+++|  ++++++++  ++.|.+||+.+++....+....  ..
T Consensus       115 ~~i~v~d~~~~~-------------~~~~~~-~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~  178 (337)
T 1pby_B          115 TRVALYDAETLS-------------RRKAFE-APRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAE  178 (337)
T ss_dssp             CEEEEEETTTTE-------------EEEEEE-CCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTT
T ss_pred             ceEEEEECCCCc-------------EEEEEe-CCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCC
Confidence            999999987653             122222 2345667778  67777777  6889999999998887776221  22


Q ss_pred             EEEeeCCCEEEEEc--CC-----------------------eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEE
Q 009993          280 YGLAPHDTTVASTS--GS-----------------------DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG  334 (520)
Q Consensus       280 ~~~~~~~~~l~~~~--d~-----------------------~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg  334 (520)
                      ..+.+++..++...  ++                       .|.+||+.+++....-...+...+.+++|+|++++++++
T Consensus       179 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  258 (337)
T 1pby_B          179 TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA  258 (337)
T ss_dssp             TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe
Confidence            24557777655444  22                       478999999877522222455678899999999999988


Q ss_pred             eCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993          335 GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  394 (520)
                        ++.|.+||+.++      ..+..+..+ ..+.+++|+|  ++|++++.++.|.+||+.++
T Consensus       259 --~~~v~~~d~~~~------~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~  311 (337)
T 1pby_B          259 --YNVLESFDLEKN------ASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             --ESEEEEEETTTT------EEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred             --CCeEEEEECCCC------cCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence              799999999887      444444433 4578899976  68888889999999999874

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.75  E-value=2.3e-15  Score=144.26  Aligned_cols=261  Identities=15%  Similarity=0.121  Sum_probs=159.3

Q ss_pred             CCeEEEEECC--CCcEEE--EeC-CCCceEEEEecCCCEEEEEeC---CCcEEEEEcccCcceeeeccCCccccceEEec
Q 009993          163 DSIVRMWHLE--DGFSIA--SSK-PLGCTIRAVAADKKLLVAGGT---DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW  234 (520)
Q Consensus       163 dg~v~vwd~~--~~~~~~--~~~-~~~~~v~~~~~~~~~l~sg~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                      ++.|.+|+++  +++...  ... .....-.+++|+++ |++++.   ++.|.+|++.++..           .....+.
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-----------~~~~~~~   82 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-----------HKLNTVV   82 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-----------EEEEEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-----------EEeeeee
Confidence            5567777664  454332  121 22333467789999 555554   68999999966531           1233334


Q ss_pred             cCCCCeEEEEE--cCCEEEEEe-cCCeEEEEECCC-Cc--EEEEeeec----------cCEEEE--eeCCCEEEEEc-CC
Q 009993          235 EHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRAL-LK--CLKVLRHS----------DWVYGL--APHDTTVASTS-GS  295 (520)
Q Consensus       235 ~h~~~v~~l~~--~~~~l~s~s-~dg~v~iwd~~~-~~--~~~~~~~~----------~~v~~~--~~~~~~l~~~~-d~  295 (520)
                      .+...+..+++  ++++|++++ .+++|.+||+.. +.  .+..+.+.          ..+.++  +|+++++++.. ++
T Consensus        83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~  162 (347)
T 3hfq_A           83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD  162 (347)
T ss_dssp             EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred             cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence            56677888888  678888887 789999999963 32  23333221          125444  48899666555 78


Q ss_pred             eEEEEECC-CCeee--EEeecccccceEEEEecCCCCEEEE-EeCCCeEEEEEcccCccccceeeeeeecCCc------C
Q 009993          296 DVYIWDTN-SGCLL--TVVNGAHVGNTKSLARSHTGDFLFT-GGEDGAIHMYEIINDCTEANVLLVATWIPHT------G  365 (520)
Q Consensus       296 ~i~iwd~~-~~~~~--~~~~~~~~~~i~~l~~s~~~~~l~t-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~------~  365 (520)
                      .|.+||+. +++..  ..+.......+..++|+|+|+++++ +..++.|.+|++.....  ....+..+....      .
T Consensus       163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~  240 (347)
T 3hfq_A          163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG--AFTQLGIVKTIPADYTAHN  240 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT--EEEEEEEEESSCTTCCSCC
T ss_pred             EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC--ceEEeeeeeecCCCCCCCC
Confidence            99999998 55432  2222223346788999999996665 56789999999885211  112222222222      3


Q ss_pred             CEEEEEecC--CEE-EEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecC-
Q 009993          366 PVNSLAFEF--PWL-VSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGE-  441 (520)
Q Consensus       366 ~v~~l~~~~--~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~-  441 (520)
                      .+..++|+|  ++| ++...++.|.+|++.....         ...+..+.     ..+....-.++++++++|++++. 
T Consensus       241 ~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~---------~~~~~~~~-----~~~~~~~~~~~spdg~~l~v~~~~  306 (347)
T 3hfq_A          241 GAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH---------LTLIQQIS-----TEGDFPRDFDLDPTEAFVVVVNQN  306 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC---------EEEEEEEE-----CSSSCCCEEEECTTSSEEEEEETT
T ss_pred             cceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc---------EEEeEEEe-----cCCCCcCeEEECCCCCEEEEEEcC
Confidence            588899976  556 5666789999999873210         00000000     01122334566677777766664 


Q ss_pred             CCeEEEEeCC
Q 009993          442 EGIVRIWNFS  451 (520)
Q Consensus       442 Dg~v~iwd~~  451 (520)
                      ++.|.+|++.
T Consensus       307 ~~~v~v~~~d  316 (347)
T 3hfq_A          307 TDNATLYARD  316 (347)
T ss_dssp             TTEEEEEEEC
T ss_pred             CCcEEEEEEe
Confidence            5899999654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.75  E-value=6.4e-16  Score=148.14  Aligned_cols=238  Identities=11%  Similarity=0.110  Sum_probs=160.1

Q ss_pred             ccccccEEEEEEccCCCEEEEEeC---CCeEEEEECCCCc--EEEEeCCC--CceEEEEecCCCEEEEEe-CCCcEEEEE
Q 009993          139 YGHTEAVLTVFVLASAKLLFTSGY---DSIVRMWHLEDGF--SIASSKPL--GCTIRAVAADKKLLVAGG-TDGFIHCWR  210 (520)
Q Consensus       139 ~~h~~~V~~l~~~~~~~~l~sgs~---dg~v~vwd~~~~~--~~~~~~~~--~~~v~~~~~~~~~l~sg~-~dg~i~vwd  210 (520)
                      ..+...+..++|+|+|+ |++++.   ++.|.+|++.++.  .+..+..+  ...-.++++++++|++++ .++.|.+|+
T Consensus        36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            34567778899999999 555544   6899999997775  33333222  334457789999888888 679999999


Q ss_pred             ccc-CcceeeeccCCccccceEEec---------cCCCCeEEEEE--cCCEEEEEecCCeEEEEECC-CCcEEEEe--e-
Q 009993          211 AVE-VLPHLFDISGSEKQNTQFRLW---------EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRA-LLKCLKVL--R-  274 (520)
Q Consensus       211 ~~~-~~~~~~~~~~~~~~~~~~~~~---------~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~-~~~~~~~~--~-  274 (520)
                      +.. +...           ....+.         .+...+.+++|  +++.+++...++.|.+||+. +++.....  . 
T Consensus       115 ~~~~g~~~-----------~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~  183 (347)
T 3hfq_A          115 IAADGALT-----------LTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTM  183 (347)
T ss_dssp             ECTTSCEE-----------EEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEEC
T ss_pred             eCCCCCee-----------ecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEc
Confidence            853 2211           111111         12345888899  66766666678899999998 55443222  2 


Q ss_pred             -eccCEEE--EeeCCCEEEEEc--CCeEEEEECCC--Cee--eEEeecccc------cceEEEEecCCCCEE-EEEeCCC
Q 009993          275 -HSDWVYG--LAPHDTTVASTS--GSDVYIWDTNS--GCL--LTVVNGAHV------GNTKSLARSHTGDFL-FTGGEDG  338 (520)
Q Consensus       275 -~~~~v~~--~~~~~~~l~~~~--d~~i~iwd~~~--~~~--~~~~~~~~~------~~i~~l~~s~~~~~l-~tg~~dg  338 (520)
                       .......  ++|++++++++.  ++.|.+|++..  ++.  +..+.. ..      ..+..++|+|+|++| +++..++
T Consensus       184 ~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~  262 (347)
T 3hfq_A          184 EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT-IPADYTAHNGAAAIRLSHDGHFLYVSNRGYN  262 (347)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES-SCTTCCSCCEEEEEEECTTSCEEEEEEETTT
T ss_pred             CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee-cCCCCCCCCcceeEEECCCCCEEEEEeCCCC
Confidence             2223444  448999766654  78999999874  543  222221 11      358899999999977 4566789


Q ss_pred             eEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeC-CCcEEEEeCC
Q 009993          339 AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG-DGKLSLIDVR  392 (520)
Q Consensus       339 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~-dg~i~vwd~~  392 (520)
                      .|.+|++....   ....+..+..+...+..++|+|  ++|++++. ++.|.+|++.
T Consensus       263 ~v~v~~~~~~g---~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          263 TLAVFAVTADG---HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEEEEEECGGG---CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEEECCCC---cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            99999997431   2245556666667789999976  57777775 4899999554

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.75  E-value=6.8e-17  Score=159.33  Aligned_cols=196  Identities=15%  Similarity=0.112  Sum_probs=138.9

Q ss_pred             CCeEEEEE--cCCEEEEEecCCeEEEEECCCC-----------c-----EEEEeeeccCEEEEe--eCCCEEE----EEc
Q 009993          238 GPITSLAL--DLTRIYSGSWDMTVRVWDRALL-----------K-----CLKVLRHSDWVYGLA--PHDTTVA----STS  293 (520)
Q Consensus       238 ~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~-----------~-----~~~~~~~~~~v~~~~--~~~~~l~----~~~  293 (520)
                      ..+..+++  ++.++++++.|+ +++|+....           .     ....+.+...|.+++  +++++|+    +++
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs  115 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE  115 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence            34566666  678899998887 888875311           1     112233566788887  7899998    666


Q ss_pred             -CCeEEEEECCCC--------eee--EEeecccccceEEEEecCC-CCEEEEEeCCCeEEEEEcccCccccceeeeeeec
Q 009993          294 -GSDVYIWDTNSG--------CLL--TVVNGAHVGNTKSLARSHT-GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI  361 (520)
Q Consensus       294 -d~~i~iwd~~~~--------~~~--~~~~~~~~~~i~~l~~s~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~  361 (520)
                       |+.|++||++++        +.+  .....+|...|.+++|+|+ +.+|++++.||+|++||++++      ..+....
T Consensus       116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~------~~~~~~~  189 (434)
T 2oit_A          116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET------VKVCATL  189 (434)
T ss_dssp             TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS------EEEEEEE
T ss_pred             CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC------cceeecc
Confidence             899999998765        222  1222368999999999998 889999999999999999988      4455566


Q ss_pred             CCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EE-
Q 009993          362 PHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RI-  436 (520)
Q Consensus       362 ~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l-  436 (520)
                      +|...|++++|+|  .+|++|+.||.|++||++.. ..            ..+.........|...+.++.|+++  ++ 
T Consensus       190 ~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~-~~------------~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~  256 (434)
T 2oit_A          190 PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQ-EK------------KVIPCPPFYESDHPVRVLDVLWIGTYVFAI  256 (434)
T ss_dssp             CGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCC-EE------------EEECCCTTCCTTSCEEEEEEEEEETTEEEE
T ss_pred             CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCc-cc------------ccccCCcccCCCCceeEEEEEEecCceEEE
Confidence            7899999999976  69999999999999999721 10            0001111111235567888888766  33 


Q ss_pred             EEecCCCe------EEEEeCCch
Q 009993          437 VCGGEEGI------VRIWNFSQA  453 (520)
Q Consensus       437 ~sg~~Dg~------v~iwd~~~~  453 (520)
                      +.++.||.      +++|++...
T Consensus       257 ~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          257 VYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEccCCCccCCCCceEEEEeccC
Confidence            23444543      899999864

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.75  E-value=3.4e-15  Score=143.88  Aligned_cols=275  Identities=10%  Similarity=0.108  Sum_probs=171.2

Q ss_pred             CCCEEEEEeC----CCeEEEEEC--CCCcEE--EEeCCCCceEEEEecCCCEEEEEeCC----CcEEEEEcccCcceeee
Q 009993          153 SAKLLFTSGY----DSIVRMWHL--EDGFSI--ASSKPLGCTIRAVAADKKLLVAGGTD----GFIHCWRAVEVLPHLFD  220 (520)
Q Consensus       153 ~~~~l~sgs~----dg~v~vwd~--~~~~~~--~~~~~~~~~v~~~~~~~~~l~sg~~d----g~i~vwd~~~~~~~~~~  220 (520)
                      ...+++.|++    ++.|.+|++  .+++..  .........-.+++|++++|++++.+    +.|.+|++.....    
T Consensus        12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g----   87 (361)
T 3scy_A           12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG----   87 (361)
T ss_dssp             GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT----
T ss_pred             CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC----
Confidence            3445666644    568999976  455432  22323333446788999999999886    7999999865210    


Q ss_pred             ccCCccccceEEeccCCCCeEEEEEcCCEEEEEe-cCCeEEEEECCCCcEEEEe----ee-----------ccCEE--EE
Q 009993          221 ISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS-WDMTVRVWDRALLKCLKVL----RH-----------SDWVY--GL  282 (520)
Q Consensus       221 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~----~~-----------~~~v~--~~  282 (520)
                           ..........+......++++++++++++ .+++|.+|++.....+..+    .+           ...+.  .+
T Consensus        88 -----~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  162 (361)
T 3scy_A           88 -----TLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRI  162 (361)
T ss_dssp             -----EEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEE
T ss_pred             -----cEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEE
Confidence                 01123333445567778888888877776 5789999999754332211    11           11223  44


Q ss_pred             eeCCCEEEEEc--CCeEEEEECCCCee------e------EEeecccccceEEEEecCCCCEEEEEe-CCCeEEEEEccc
Q 009993          283 APHDTTVASTS--GSDVYIWDTNSGCL------L------TVVNGAHVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIIN  347 (520)
Q Consensus       283 ~~~~~~l~~~~--d~~i~iwd~~~~~~------~------~~~~~~~~~~i~~l~~s~~~~~l~tg~-~dg~i~iwd~~~  347 (520)
                      +|++++++++.  ++.|.+|++.....      +      ......+...+..++|+|+|+++++++ .++.|.+|++.+
T Consensus       163 spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~  242 (361)
T 3scy_A          163 TPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD  242 (361)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET
T ss_pred             CCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC
Confidence            58998766655  78999998875431      1      122223556688999999999887777 689999999986


Q ss_pred             CccccceeeeeeecCCcCCEEEEEecC--CEEEEEeC--CCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcc
Q 009993          348 DCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG--DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE  423 (520)
Q Consensus       348 ~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (520)
                      +.. .....+.....+...+..++|+|  ++|+++..  ++.|.+|++....       +. ...+..+      ..+..
T Consensus       243 g~~-~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~-------g~-~~~~~~~------~~g~~  307 (361)
T 3scy_A          243 GML-DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETN-------GT-LTKVGYQ------LTGIH  307 (361)
T ss_dssp             TEE-EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTT-------CC-EEEEEEE------ECSSC
T ss_pred             Cce-EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCC-------Cc-EEEeeEe------cCCCC
Confidence            521 11112222334445678999976  57766655  4899999986210       00 0000000      01222


Q ss_pred             eeeEEEEecCCEEEEec-CCCeEEEEeCC
Q 009993          424 CNLLSVDIGADRIVCGG-EEGIVRIWNFS  451 (520)
Q Consensus       424 ~~v~~~~~~~~~l~sg~-~Dg~v~iwd~~  451 (520)
                      ...+++++++++|++++ .++.|.+|++.
T Consensus       308 ~~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          308 PRNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             CCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             CceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence            33456777788777666 77999997665

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.74  E-value=2.3e-16  Score=166.91  Aligned_cols=234  Identities=9%  Similarity=0.064  Sum_probs=162.0

Q ss_pred             ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCc-----eE--EEEecCCCEEEEEeCC---------CcE
Q 009993          143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC-----TI--RAVAADKKLLVAGGTD---------GFI  206 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~-----~v--~~~~~~~~~l~sg~~d---------g~i  206 (520)
                      ....+++|+|||++++++  |++|++||+.+++....+.+|..     ..  ..++|||++|+.++.+         +.+
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence            345688999999999886  99999999999998777776643     22  5778999999998876         566


Q ss_pred             EEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--eccCE---
Q 009993          207 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWV---  279 (520)
Q Consensus       207 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v---  279 (520)
                      .+||+.++.              ...+..|.+.+...+|  ||+.|+.++ |+.|++||..+++..+...  +...+   
T Consensus        95 ~~~d~~~~~--------------~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g  159 (740)
T 4a5s_A           95 DIYDLNKRQ--------------LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNG  159 (740)
T ss_dssp             EEEETTTTE--------------ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEES
T ss_pred             EEEECCCCc--------------EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecC
Confidence            799998763              2234567778999999  788888874 6899999998887554322  22222   


Q ss_pred             ----------------EEEeeCCCEEEEEc-C-C-----------------------------------eEEEEECCC--
Q 009993          280 ----------------YGLAPHDTTVASTS-G-S-----------------------------------DVYIWDTNS--  304 (520)
Q Consensus       280 ----------------~~~~~~~~~l~~~~-d-~-----------------------------------~i~iwd~~~--  304 (520)
                                      ..++|||+.|+.++ | +                                   .|++||+.+  
T Consensus       160 ~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~  239 (740)
T 4a5s_A          160 ITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLS  239 (740)
T ss_dssp             BCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCC
T ss_pred             cccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCC
Confidence                            34679999888764 2 2                                   588899988  


Q ss_pred             -Ce--eeEEeec-----ccccceEEEEecCCCCEEEEEeC----CCeEEEEEcccCccccceeeeeee--cCCcCCEE--
Q 009993          305 -GC--LLTVVNG-----AHVGNTKSLARSHTGDFLFTGGE----DGAIHMYEIINDCTEANVLLVATW--IPHTGPVN--  368 (520)
Q Consensus       305 -~~--~~~~~~~-----~~~~~i~~l~~s~~~~~l~tg~~----dg~i~iwd~~~~~~~~~~~~~~~~--~~h~~~v~--  368 (520)
                       ++  ....+..     +|...+..++|+|||+.++....    +..|.+||+.++........+..+  .+|...|.  
T Consensus       240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~  319 (740)
T 4a5s_A          240 SVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRF  319 (740)
T ss_dssp             SSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSS
T ss_pred             CCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccC
Confidence             73  2223322     26778999999999997665432    347999999887410000111222  34555444  


Q ss_pred             ---EEEecC--CEEE-EEe-CCC--cEEEEeCCc
Q 009993          369 ---SLAFEF--PWLV-SAA-GDG--KLSLIDVRK  393 (520)
Q Consensus       369 ---~l~~~~--~~l~-s~s-~dg--~i~vwd~~~  393 (520)
                         ...|+|  +.|+ ..+ .+|  .|++||+.+
T Consensus       320 ~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~  353 (740)
T 4a5s_A          320 RPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK  353 (740)
T ss_dssp             SCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred             cCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence               677876  4555 555 344  577888765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.73  E-value=8.3e-15  Score=141.19  Aligned_cols=242  Identities=10%  Similarity=0.132  Sum_probs=158.5

Q ss_pred             ccccEEEEEEccCCCEEEEEeCC----CeEEEEECCC--Cc--EEEEeCCCCceEEEEecCCCEEEEEe-CCCcEEEEEc
Q 009993          141 HTEAVLTVFVLASAKLLFTSGYD----SIVRMWHLED--GF--SIASSKPLGCTIRAVAADKKLLVAGG-TDGFIHCWRA  211 (520)
Q Consensus       141 h~~~V~~l~~~~~~~~l~sgs~d----g~v~vwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~l~sg~-~dg~i~vwd~  211 (520)
                      |...+..++|+|+|++|++++.+    +.|.+|++..  ++  .+.....+......++.++++|++++ .++.|.+|++
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~  127 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPI  127 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEB
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEe
Confidence            67778889999999999999886    7999998865  43  33344444444555555888777776 5789999998


Q ss_pred             ccCcceeeeccCCccccceEEe--------ccCCCCeEEEEE--cCCEEEEEe-cCCeEEEEECCCCcE------E----
Q 009993          212 VEVLPHLFDISGSEKQNTQFRL--------WEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRALLKC------L----  270 (520)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~l~~--~~~~l~s~s-~dg~v~iwd~~~~~~------~----  270 (520)
                      .+.....       ........        ..+...+.+++|  +++++++++ .++.|.+|++.....      +    
T Consensus       128 ~~~g~~~-------~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~  200 (361)
T 3scy_A          128 GQDGALL-------PASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG  200 (361)
T ss_dssp             CTTSCBC-------SCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred             CCCCcCc-------ccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence            6532100       00000011        112344678888  677665555 588999998875431      1    


Q ss_pred             ----EEeeeccCEEEE--eeCCCEEEEEc--CCeEEEEECCCCee--eEEee--cccccceEEEEecCCCCEEEEEeCC-
Q 009993          271 ----KVLRHSDWVYGL--APHDTTVASTS--GSDVYIWDTNSGCL--LTVVN--GAHVGNTKSLARSHTGDFLFTGGED-  337 (520)
Q Consensus       271 ----~~~~~~~~v~~~--~~~~~~l~~~~--d~~i~iwd~~~~~~--~~~~~--~~~~~~i~~l~~s~~~~~l~tg~~d-  337 (520)
                          ...........+  ++++++++++.  ++.|.+||+.++..  +..+.  ..+......++|+|+|++|+++..+ 
T Consensus       201 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~  280 (361)
T 3scy_A          201 TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK  280 (361)
T ss_dssp             EEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS
T ss_pred             cccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC
Confidence                112233444444  48998776665  79999999987754  22222  1233456899999999998776654 


Q ss_pred             -CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEe-CCCcEEEEeCC
Q 009993          338 -GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAA-GDGKLSLIDVR  392 (520)
Q Consensus       338 -g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~  392 (520)
                       +.|.+|++....  .....+..+.. ...+.+++|+|  ++|++++ .++.|.+|++.
T Consensus       281 ~~~i~v~~~~~~~--g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          281 ADGVAIFKVDETN--GTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             SCEEEEEEECTTT--CCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             CCEEEEEEEcCCC--CcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence             899999996221  01123444443 45678999976  5787777 67899997654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.71  E-value=2.4e-15  Score=146.46  Aligned_cols=289  Identities=11%  Similarity=0.004  Sum_probs=176.3

Q ss_pred             hhhhccccccEEE-----EEEccCCCEEEEEeC-CC--eEEEEECCCCcEEEEeCCCCceE--EEEecCCCEEEEEeCCC
Q 009993          135 IDVLYGHTEAVLT-----VFVLASAKLLFTSGY-DS--IVRMWHLEDGFSIASSKPLGCTI--RAVAADKKLLVAGGTDG  204 (520)
Q Consensus       135 ~~~l~~h~~~V~~-----l~~~~~~~~l~sgs~-dg--~v~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sg~~dg  204 (520)
                      +..+..|......     .+|+|||++|+.++. ++  .|.+||+.+++......++...+  ..++|+++.|+.++.++
T Consensus        23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~  102 (388)
T 3pe7_A           23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR  102 (388)
T ss_dssp             EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred             eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence            3445666666665     789999999998887 66  48888999988777666665443  36889999999999999


Q ss_pred             cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE----cCCEEEEE----------------------ecCCe
Q 009993          205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSG----------------------SWDMT  258 (520)
Q Consensus       205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~----------------------s~dg~  258 (520)
                      .|.+||+.++...             .....+...+....+    ++..++..                      ..+..
T Consensus       103 ~l~~~d~~~g~~~-------------~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (388)
T 3pe7_A          103 NLMRVDLATLEEN-------------VVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCR  169 (388)
T ss_dssp             EEEEEETTTCCEE-------------EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred             eEEEEECCCCcce-------------eeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcce
Confidence            9999999877421             122233333433332    55666532                      24478


Q ss_pred             EEEEECCCCcEEEEeeeccCEEEEe--e-CCCEEEEEc-CC------eEEEEECCCCeeeEEeecccc-cceEEEEecCC
Q 009993          259 VRVWDRALLKCLKVLRHSDWVYGLA--P-HDTTVASTS-GS------DVYIWDTNSGCLLTVVNGAHV-GNTKSLARSHT  327 (520)
Q Consensus       259 v~iwd~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~-d~------~i~iwd~~~~~~~~~~~~~~~-~~i~~l~~s~~  327 (520)
                      |.+||+.+++......+...+..+.  | +++.++... ++      .|.++|...+... .+...+. ..+....|+|+
T Consensus       170 l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spd  248 (388)
T 3pe7_A          170 LMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPD  248 (388)
T ss_dssp             EEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTT
T ss_pred             EEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCC
Confidence            9999999998776666766676654  8 888887766 32      6888888765443 3332222 35778899999


Q ss_pred             CCEEEEEeC-CC----eEEEEEcccCccccceeeeeeecCCcCC---EEEEEecC--CEEEEE---------eCCCcEEE
Q 009993          328 GDFLFTGGE-DG----AIHMYEIINDCTEANVLLVATWIPHTGP---VNSLAFEF--PWLVSA---------AGDGKLSL  388 (520)
Q Consensus       328 ~~~l~tg~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~h~~~---v~~l~~~~--~~l~s~---------s~dg~i~v  388 (520)
                      |+.|+..+. ++    .|++||+.++..    ..+..+.++...   ...+.|+|  +.|+..         ..+..|++
T Consensus       249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~----~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~  324 (388)
T 3pe7_A          249 GSALVYVSYLKGSPDRFIYSADPETLEN----RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYV  324 (388)
T ss_dssp             SSCEEEEEEETTCCCEEEEEECTTTCCE----EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEE
T ss_pred             CCEEEEEecCCCCCcceEEEEecCCCce----EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEE
Confidence            997755433 22    399999988742    223333321100   01113543  455532         45678999


Q ss_pred             EeCCcccccCCCCCCCceeeeeecCCCccc---ccCcceeeEEEEecCCEEEE-ecCCCeEEEEeCC
Q 009993          389 IDVRKLLRSGRPTSGKRVSRVIEVEPPQRM---LHGFECNLLSVDIGADRIVC-GGEEGIVRIWNFS  451 (520)
Q Consensus       389 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~l~s-g~~Dg~v~iwd~~  451 (520)
                      ||+.++...          .+.........   -..+.....+++++++.|+. +..+|...||.+.
T Consensus       325 ~d~~~~~~~----------~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          325 FNMKNGTQH----------RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             EETTTTEEE----------EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             EeccCCceE----------EeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence            999874211          11100000000   00001223466777875554 4457777777654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.69  E-value=4.1e-15  Score=155.62  Aligned_cols=279  Identities=9%  Similarity=-0.048  Sum_probs=181.3

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEE--eCCCeEEEEECCCCcEEEEeCCCCceE-----------EEEe--cCCCE-EE
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTS--GYDSIVRMWHLEDGFSIASSKPLGCTI-----------RAVA--ADKKL-LV  198 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sg--s~dg~v~vwd~~~~~~~~~~~~~~~~v-----------~~~~--~~~~~-l~  198 (520)
                      ...+.+|...|..++|++++-+++++  +.++...||....+.....+..+...+           ..++  ||++. |+
T Consensus        16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la   95 (662)
T 3azo_A           16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV   95 (662)
T ss_dssp             HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred             HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence            35678899999999999877666766  568899999965555555665554332           2344  89988 77


Q ss_pred             EEeC-CCcEEEEEcc--c-CcceeeeccCCccccceEEecc-----CCCCeEEEEE--cCCEEEEEecC----------C
Q 009993          199 AGGT-DGFIHCWRAV--E-VLPHLFDISGSEKQNTQFRLWE-----HEGPITSLAL--DLTRIYSGSWD----------M  257 (520)
Q Consensus       199 sg~~-dg~i~vwd~~--~-~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~--~~~~l~s~s~d----------g  257 (520)
                      .++. +..|.++++.  + +              ....+..     |...+.+++|  |++.|++++.|          .
T Consensus        96 ~~~~~~~~l~~~~~~~~g~~--------------~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~  161 (662)
T 3azo_A           96 FTHFGDQRLYAFEPDAPGGA--------------VPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRR  161 (662)
T ss_dssp             EEBTTTCCEEEECTTSTTCC--------------CCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEE
T ss_pred             EEECCCCeEEEEcCCCCCCC--------------CCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCcee
Confidence            6654 4566666654  2 2              1223333     5667888888  78899988877          5


Q ss_pred             eEEEEECCC------CcEEEEe-eeccCEE--EEeeCCCEEEEEc-CC--------eEEEEECC-CC--eeeEEeecccc
Q 009993          258 TVRVWDRAL------LKCLKVL-RHSDWVY--GLAPHDTTVASTS-GS--------DVYIWDTN-SG--CLLTVVNGAHV  316 (520)
Q Consensus       258 ~v~iwd~~~------~~~~~~~-~~~~~v~--~~~~~~~~l~~~~-d~--------~i~iwd~~-~~--~~~~~~~~~~~  316 (520)
                      .|++||+.+      ++..... .+...+.  .++|+|+.|+.++ ++        .|++||+. ++  .....+..+|.
T Consensus       162 ~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~  241 (662)
T 3azo_A          162 FLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE  241 (662)
T ss_dssp             EEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT
T ss_pred             EEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC
Confidence            899999988      6655444 4344444  3559999998776 53        79999999 56  23344443457


Q ss_pred             cceEEEEecCCCCEEEEEeCCC--eEEEEEcccCccccceeeeeeecCCcCC--------EEEEEecC--CEEEEEeCCC
Q 009993          317 GNTKSLARSHTGDFLFTGGEDG--AIHMYEIINDCTEANVLLVATWIPHTGP--------VNSLAFEF--PWLVSAAGDG  384 (520)
Q Consensus       317 ~~i~~l~~s~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~--------v~~l~~~~--~~l~s~s~dg  384 (520)
                      ..+..+.|+|||+++++++.++  .|.+||+.++.      .......+...        +..++|++  .++++++. +
T Consensus       242 ~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~------~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~  314 (662)
T 3azo_A          242 EAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA------ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G  314 (662)
T ss_dssp             BCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC------EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S
T ss_pred             ceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc------eeecccccccccCccccccCceEeEeCCCEEEEEEEc-C
Confidence            8899999999999888888888  55555554442      22222222221        45678854  68888888 9


Q ss_pred             cEEEEeC--CcccccCCCCCCCceeeeeecCCCcccccCcceeeEEE-EecCC--EEEEecCCCe--EEEEeCCchH
Q 009993          385 KLSLIDV--RKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSV-DIGAD--RIVCGGEEGI--VRIWNFSQAF  454 (520)
Q Consensus       385 ~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~--~l~sg~~Dg~--v~iwd~~~~~  454 (520)
                      .++||.+  .+..                    ...+..+...+..+ +++++  ++++++.+..  |.+||+.++.
T Consensus       315 ~~~l~~~d~~~~~--------------------~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~  371 (662)
T 3azo_A          315 AAVLGILDPESGE--------------------LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR  371 (662)
T ss_dssp             SCEEEEEETTTTE--------------------EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             ccEEEEEECCCCc--------------------EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            9999954  3321                    12223344455566 77777  4445555544  5555655543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.69  E-value=6e-16  Score=159.31  Aligned_cols=258  Identities=10%  Similarity=0.018  Sum_probs=168.9

Q ss_pred             ceEEEEecCCCEEEEEeC-CCcEEEEEcccCcceeeeccCCccccceEEeccCC-CCeEEEEEcCC-EEEEEec---CCe
Q 009993          185 CTIRAVAADKKLLVAGGT-DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE-GPITSLALDLT-RIYSGSW---DMT  258 (520)
Q Consensus       185 ~~v~~~~~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~-~l~s~s~---dg~  258 (520)
                      ....++++||+.|++++. ||++.||++.++              ....+..|. ..+..+.|+++ .+++++.   +..
T Consensus        24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g--------------~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~   89 (582)
T 3o4h_A           24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG--------------ETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQ   89 (582)
T ss_dssp             EEEEEEEETTTEEEEEEEETTEEEEEEEETT--------------EEEECCSSCCSEECEECTTCSEEEEEEECSTTSCC
T ss_pred             hheeecCCCCCeEEEEEccCCceeEEEEcCC--------------CcEeeecccccccccccCCCCeEEEEeccCCCCcc
Confidence            334456699999999887 999999998554              223444555 57889999544 4555554   455


Q ss_pred             EEEEECCC---CcEEEEee--eccCEEEEeeCCCE--EEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEE
Q 009993          259 VRVWDRAL---LKCLKVLR--HSDWVYGLAPHDTT--VASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFL  331 (520)
Q Consensus       259 v~iwd~~~---~~~~~~~~--~~~~v~~~~~~~~~--l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l  331 (520)
                      .++|.+..   +... .+.  ....+.+++++++.  ++++.++.+.+||+.+++......  +..  .+++|+|||++|
T Consensus        90 ~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~--~~~--~~~~~spDG~~l  164 (582)
T 3o4h_A           90 HALFKVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR--LPG--FGFVSDIRGDLI  164 (582)
T ss_dssp             EEEEEEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE--ESS--CEEEEEEETTEE
T ss_pred             eEEEEEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec--CCC--ceEEECCCCCEE
Confidence            56654432   2222 332  23335677788753  444446666799999987665543  222  789999999999


Q ss_pred             EEEeCC----CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCC--cEEEEeCCcccccCCCCCC
Q 009993          332 FTGGED----GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDG--KLSLIDVRKLLRSGRPTSG  403 (520)
Q Consensus       332 ~tg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~  403 (520)
                      ++++.+    +.|++||+.++.       ...+..|.+.+..++|+|  +.|+++..++  .|++||+.++... .....
T Consensus       165 a~~~~~~~~~~~i~~~d~~~g~-------~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~  236 (582)
T 3o4h_A          165 AGLGFFGGGRVSLFTSNLSSGG-------LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP  236 (582)
T ss_dssp             EEEEEEETTEEEEEEEETTTCC-------CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS
T ss_pred             EEEEEcCCCCeEEEEEcCCCCC-------ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC
Confidence            988777    789999998872       335678888899999976  6888888888  8999999874322 10000


Q ss_pred             CceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeecc
Q 009993          404 KRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSS  483 (520)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  483 (520)
                               ........+....-.++++++.++++++.||.+++|++  ++...       .      .......++|+ 
T Consensus       237 ---------~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~-------~------~~~~v~~~~~s-  291 (582)
T 3o4h_A          237 ---------SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE-------A------PQGNHGRVVLW-  291 (582)
T ss_dssp             ---------CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC-------C------CSSEEEEEEEE-
T ss_pred             ---------CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec-------c------CCCceEEEEec-
Confidence                     00000001111122337778879999999999999999  33211       0      01234678899 


Q ss_pred             CCCcccccccc
Q 009993          484 KGGRTDQCSVA  494 (520)
Q Consensus       484 ~g~~~~~~s~~  494 (520)
                      ||+.+++.+.+
T Consensus       292 dg~~l~~~s~~  302 (582)
T 3o4h_A          292 RGKLVTSHTSL  302 (582)
T ss_dssp             TTEEEEEEEET
T ss_pred             CCEEEEEEcCC
Confidence            88887765543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.68  E-value=1.3e-15  Score=161.03  Aligned_cols=296  Identities=11%  Similarity=0.018  Sum_probs=187.4

Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCC-----ceEEEEecCCCEEEEEeC---------CCcEEEEEcc
Q 009993          147 TVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-----CTIRAVAADKKLLVAGGT---------DGFIHCWRAV  212 (520)
Q Consensus       147 ~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~l~sg~~---------dg~i~vwd~~  212 (520)
                      .++|+|+|+++++ +.|++|++||+.+++....+..+.     ....+++|||++|++++.         ++.|++||+.
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            6789999965555 469999999999998877766553     345678899999998876         7899999998


Q ss_pred             cCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--eccC----------
Q 009993          213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDW----------  278 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~----------  278 (520)
                      ++....           ...+   ...+..++|  ||+.|++++ |+.|++||+.+++......  +...          
T Consensus        99 ~g~~~~-----------~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~  163 (719)
T 1z68_A           99 NGEFVR-----------GNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVY  163 (719)
T ss_dssp             TTEECC-----------SSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHH
T ss_pred             CCcccc-----------ceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccccee
Confidence            764200           0011   245777888  788888875 7899999999887755432  2221          


Q ss_pred             ---------EEEEeeCCCEEEEEc-CC----------------------------------eEEEEECCCCeee--EEee
Q 009993          279 ---------VYGLAPHDTTVASTS-GS----------------------------------DVYIWDTNSGCLL--TVVN  312 (520)
Q Consensus       279 ---------v~~~~~~~~~l~~~~-d~----------------------------------~i~iwd~~~~~~~--~~~~  312 (520)
                               -..++|+|+.|+.++ |.                                  .|++||+.+++..  ..+.
T Consensus       164 ~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~  243 (719)
T 1z68_A          164 EEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP  243 (719)
T ss_dssp             HHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC
T ss_pred             eeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc
Confidence                     245569999999877 42                                  7889999988753  1221


Q ss_pred             -----cccccceEEEEecCCCCEEEEEeCC----CeEEEEE----cccCccccceeeeeee----cCCcCCEE-----EE
Q 009993          313 -----GAHVGNTKSLARSHTGDFLFTGGED----GAIHMYE----IINDCTEANVLLVATW----IPHTGPVN-----SL  370 (520)
Q Consensus       313 -----~~~~~~i~~l~~s~~~~~l~tg~~d----g~i~iwd----~~~~~~~~~~~~~~~~----~~h~~~v~-----~l  370 (520)
                           .+|...+..++|+||++++++....    ..|.+||    +.++      .....+    .+|...+.     .+
T Consensus       244 ~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~  317 (719)
T 1z68_A          244 VPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW------DCPKTQEHIEESRTGWAGGFFVSTP  317 (719)
T ss_dssp             CCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE------ECCGGGEEEEECSSSCSSSSSCCCC
T ss_pred             CCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC------ceEEEEecccccCCceEccccCCcc
Confidence                 1477789999999998877764432    2488888    6665      223233    35666666     78


Q ss_pred             EecC--CEEE--EEeCCC--cEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeE--EEEecCCEEEEecC-
Q 009993          371 AFEF--PWLV--SAAGDG--KLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLL--SVDIGADRIVCGGE-  441 (520)
Q Consensus       371 ~~~~--~~l~--s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~-  441 (520)
                      .|+|  +.|+  ++..+|  .|.+||+.+..                    ...+..+...+.  ... +++.|+..+. 
T Consensus       318 ~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--------------------~~~lt~~~~~v~~~~~~-d~~~i~~~~~~  376 (719)
T 1z68_A          318 VFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--------------------AIQITSGKWEAINIFRV-TQDSLFYSSNE  376 (719)
T ss_dssp             EECTTSSCEEEEEECTTSCEEEEEESSCSTT--------------------CEECSCSSSCEEEEEEE-CSSEEEEEESC
T ss_pred             EECCCCCeEEEEEEccCCceEEEEEECCCCc--------------------eEecccCceEEEEEEEE-eCCEEEEEEec
Confidence            8876  4333  454566  46666765431                    011111221222  122 5665544444 


Q ss_pred             ----CCeEEEEeCCc--hH-hHHHHhhhhcccccchhhhhccceeeeccCCCccccc
Q 009993          442 ----EGIVRIWNFSQ--AF-EIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQC  491 (520)
Q Consensus       442 ----Dg~v~iwd~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~  491 (520)
                          ++.+++|.+..  +. ....+....      .........+.|+|||+.++..
T Consensus       377 ~~~~~~~~~l~~~~~~~g~~~~~~l~~~~------~~~~~~~~~~~~s~dg~~l~~~  427 (719)
T 1z68_A          377 FEEYPGRRNIYRISIGSYPPSKKCVTCHL------RKERCQYYTASFSDYAKYYALV  427 (719)
T ss_dssp             GGGCTTCBEEEEEECSSSSCCEEESSTTT------TTTTBCBEEEEECGGGSSEEEE
T ss_pred             CCCCCceEEEEEEeCCCCCCCceeccCcc------CCCCCceEEEEECCCCCEEEEE
Confidence                48899998764  21 000000000      0011234568899999988754

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.66  E-value=9.6e-16  Score=162.00  Aligned_cols=256  Identities=9%  Similarity=-0.026  Sum_probs=164.7

Q ss_pred             CCCcccHH----Hhhhhhccccc---cEEEEEEccCCCEEEEEeC---------CCeEEEEECCCCcEE--EEeCCCCce
Q 009993          125 FSDDKSWK----ELIDVLYGHTE---AVLTVFVLASAKLLFTSGY---------DSIVRMWHLEDGFSI--ASSKPLGCT  186 (520)
Q Consensus       125 ~~~~~~W~----~~~~~l~~h~~---~V~~l~~~~~~~~l~sgs~---------dg~v~vwd~~~~~~~--~~~~~~~~~  186 (520)
                      ......|+    +....+.+|..   .|.+++|+|||++|++++.         |+.|++||+.+++.+  ..+. ....
T Consensus        35 d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~-~~~~  113 (719)
T 1z68_A           35 DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP-RPIQ  113 (719)
T ss_dssp             TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC-SSBC
T ss_pred             CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC-cccc
Confidence            44456676    23334444544   4899999999999998876         789999999998763  2222 2334


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCC---------eEEEEE--cCCEEEEEec
Q 009993          187 IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGP---------ITSLAL--DLTRIYSGSW  255 (520)
Q Consensus       187 v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------v~~l~~--~~~~l~s~s~  255 (520)
                      -.+++|||+.|+.+. ++.|++|++.++........+.    ....+.+|...         ..+++|  ||++|++++.
T Consensus       114 ~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~----~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~  188 (719)
T 1z68_A          114 YLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGR----ENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEF  188 (719)
T ss_dssp             CEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCB----TTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEE
T ss_pred             cceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCC----cCCeEcccccceeeeecccCcccEEECCCCCEEEEEEE
Confidence            467889999999886 7899999998775322111110    00011233222         247888  7889998886


Q ss_pred             CC----------------------------------eEEEEECCCCcEE--EEe-------eeccCEEEEe--eCCCEEE
Q 009993          256 DM----------------------------------TVRVWDRALLKCL--KVL-------RHSDWVYGLA--PHDTTVA  290 (520)
Q Consensus       256 dg----------------------------------~v~iwd~~~~~~~--~~~-------~~~~~v~~~~--~~~~~l~  290 (520)
                      |.                                  .|++||+.+++..  ..+       .+...+..+.  |++++++
T Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~  268 (719)
T 1z68_A          189 NDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCL  268 (719)
T ss_dssp             ECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEE
T ss_pred             CCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEE
Confidence            53                                  7899999988753  111       1455666665  8877777


Q ss_pred             EEc-C----CeEEEEE----CCCCeeeEEee---cccccceE-----EEEecCCCCEEE--EEeCCCe--EEEEEcccCc
Q 009993          291 STS-G----SDVYIWD----TNSGCLLTVVN---GAHVGNTK-----SLARSHTGDFLF--TGGEDGA--IHMYEIINDC  349 (520)
Q Consensus       291 ~~~-d----~~i~iwd----~~~~~~~~~~~---~~~~~~i~-----~l~~s~~~~~l~--tg~~dg~--i~iwd~~~~~  349 (520)
                      +.. .    ..|.+||    +.+++....+.   .+|...+.     .+.|+|+|+.++  ++..+|.  |.+||+.++ 
T Consensus       269 ~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~-  347 (719)
T 1z68_A          269 QWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE-  347 (719)
T ss_dssp             EEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST-
T ss_pred             EEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC-
Confidence            644 2    2489999    88877654442   34666666     789999999554  3556664  566666555 


Q ss_pred             cccceeeeeeecCCcCCEEEEEe-cCCEEEEEeCC-----CcEEEEeCCc
Q 009993          350 TEANVLLVATWIPHTGPVNSLAF-EFPWLVSAAGD-----GKLSLIDVRK  393 (520)
Q Consensus       350 ~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~d-----g~i~vwd~~~  393 (520)
                           . ...+..+...+..+.+ +++.|+..+.+     +.+++|.+..
T Consensus       348 -----~-~~~lt~~~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          348 -----N-AIQITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             -----T-CEECSCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             -----c-eEecccCceEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeC
Confidence                 2 3344455555665544 45566655554     8899998764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.66  E-value=5.3e-14  Score=135.77  Aligned_cols=270  Identities=11%  Similarity=0.083  Sum_probs=163.1

Q ss_pred             EEEEEeCC--CeEEEEEC--CCCcEE--EEeC-CC--CceEEEEecCCCEEEEEeCCCcEEEEEcc-cCcceeeeccCCc
Q 009993          156 LLFTSGYD--SIVRMWHL--EDGFSI--ASSK-PL--GCTIRAVAADKKLLVAGGTDGFIHCWRAV-EVLPHLFDISGSE  225 (520)
Q Consensus       156 ~l~sgs~d--g~v~vwd~--~~~~~~--~~~~-~~--~~~v~~~~~~~~~l~sg~~dg~i~vwd~~-~~~~~~~~~~~~~  225 (520)
                      +++.|++.  +.|.+|++  .+++..  .... +.  ...-.++++++++|++++.+ .|.+|++. ++...        
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~--------   74 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV--------   74 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE--------
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE--------
Confidence            35666653  56887765  456432  2221 11  33456778999999999988 99999986 54211        


Q ss_pred             cccceEEeccCCCCeEEEEE--cCCE--EEEEe-------------cCCeEEEEECC-CCcEEEEee-----eccCEEEE
Q 009993          226 KQNTQFRLWEHEGPITSLAL--DLTR--IYSGS-------------WDMTVRVWDRA-LLKCLKVLR-----HSDWVYGL  282 (520)
Q Consensus       226 ~~~~~~~~~~h~~~v~~l~~--~~~~--l~s~s-------------~dg~v~iwd~~-~~~~~~~~~-----~~~~v~~~  282 (520)
                         .......+ +.+.++++  ++++  +++++             .++++.+|++. +++....+.     +...+.++
T Consensus        75 ---~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~  150 (365)
T 1jof_A           75 ---HEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGM  150 (365)
T ss_dssp             ---EEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEE
T ss_pred             ---EeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEE
Confidence               11111111 12334566  5663  44553             68999999997 466554443     23456665


Q ss_pred             e--eCCCEEEEEc--CCeEEEEECC-CCeee--EEeec-ccccceEEEEecCCCCEEEEEeC-CCeEEEEEccc--Cccc
Q 009993          283 A--PHDTTVASTS--GSDVYIWDTN-SGCLL--TVVNG-AHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIIN--DCTE  351 (520)
Q Consensus       283 ~--~~~~~l~~~~--d~~i~iwd~~-~~~~~--~~~~~-~~~~~i~~l~~s~~~~~l~tg~~-dg~i~iwd~~~--~~~~  351 (520)
                      .  |++++++++.  ++.|++||+. +++..  ..+.. .|...+..++|+|+|+++++++. ++.|.+|++..  +...
T Consensus       151 ~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~  230 (365)
T 1jof_A          151 VFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPV  230 (365)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEE
Confidence            5  8999888765  5789999998 67643  22321 13567899999999999888775 78999998763  3210


Q ss_pred             cceeeeeeec----CCcC------CEEEEE-ecC--CEEEEEeCC-C-----cEEEEeCCc-ccccCCCCCCCceeeeee
Q 009993          352 ANVLLVATWI----PHTG------PVNSLA-FEF--PWLVSAAGD-G-----KLSLIDVRK-LLRSGRPTSGKRVSRVIE  411 (520)
Q Consensus       352 ~~~~~~~~~~----~h~~------~v~~l~-~~~--~~l~s~s~d-g-----~i~vwd~~~-~~~~~~~~~~~~~~~~~~  411 (520)
                      .....+..+.    +|..      .+..++ |+|  ++|++++.+ +     .|.+|++.. +.          ...+..
T Consensus       231 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~----------~~~~~~  300 (365)
T 1jof_A          231 YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS----------IEKQLF  300 (365)
T ss_dssp             EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC----------EEEEEE
T ss_pred             EccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC----------EEEeee
Confidence            0001122221    2232      488999 876  577766543 2     899999862 21          000000


Q ss_pred             -cCCCcccccCcceeeEEEEe---cCCEEEEecC-CCeEEEEeCCch
Q 009993          412 -VEPPQRMLHGFECNLLSVDI---GADRIVCGGE-EGIVRIWNFSQA  453 (520)
Q Consensus       412 -~~~~~~~~~~~~~~v~~~~~---~~~~l~sg~~-Dg~v~iwd~~~~  453 (520)
                       ..     ..+....-.++++   ++++|++++. ++.|.+|++...
T Consensus       301 ~~~-----~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          301 LSP-----TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEE-----CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             eee-----cCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence             00     0111122346677   7888888876 499999998754

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.66  E-value=3.1e-13  Score=125.52  Aligned_cols=231  Identities=13%  Similarity=0.114  Sum_probs=159.1

Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC------CCceEE--EEe-cCCCEEEEEeC-CCcEEE
Q 009993          139 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP------LGCTIR--AVA-ADKKLLVAGGT-DGFIHC  208 (520)
Q Consensus       139 ~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~------~~~~v~--~~~-~~~~~l~sg~~-dg~i~v  208 (520)
                      .+|-..+.+++++++++++++.+.++.|.+||.. ++.+..+..      +.....  ++. +++.++++... ++.|.+
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            3666788999999999988888889999999987 666665532      222333  443 45555555533 789999


Q ss_pred             EEcccCcceeeeccCCccccceEEe-ccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee---eccCEEEE
Q 009993          209 WRAVEVLPHLFDISGSEKQNTQFRL-WEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGL  282 (520)
Q Consensus       209 wd~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~  282 (520)
                      ||. ++.             ....+ ..+...+.++++  +++.+++...++.|.+||.. ++.+..+.   +...+.++
T Consensus       105 ~d~-~g~-------------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i  169 (286)
T 1q7f_A          105 YNQ-YGQ-------------FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGV  169 (286)
T ss_dssp             ECT-TSC-------------EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEE
T ss_pred             ECC-CCc-------------EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEE
Confidence            994 332             11122 134456888998  56677777778999999964 56666554   23456666


Q ss_pred             e--eCCCEEEEEc-CCeEEEEECCCCeeeEEeec-ccccceEEEEecCCCCEEEEEeCCC-eEEEEEcccCccccceeee
Q 009993          283 A--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG-AHVGNTKSLARSHTGDFLFTGGEDG-AIHMYEIINDCTEANVLLV  357 (520)
Q Consensus       283 ~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~tg~~dg-~i~iwd~~~~~~~~~~~~~  357 (520)
                      .  ++++++++.. ++.|++||.. ++.+..+.. ++...+..++++++|.++++...++ .|.+||....       .+
T Consensus       170 ~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~-------~~  241 (286)
T 1q7f_A          170 VVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ-------LI  241 (286)
T ss_dssp             EECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC-------EE
T ss_pred             EECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC-------EE
Confidence            6  6778777766 8999999984 455555532 2236789999999999888888776 9999996432       33


Q ss_pred             eeecCC--cCCEEEEEecC-CEEEEEeCCCcEEEEeCCc
Q 009993          358 ATWIPH--TGPVNSLAFEF-PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       358 ~~~~~h--~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~  393 (520)
                      ..+..+  ...+.++++++ ..|+.++.|+.|++|++..
T Consensus       242 ~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~  280 (286)
T 1q7f_A          242 SALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ  280 (286)
T ss_dssp             EEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred             EEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence            333333  23478899976 3444447899999999865

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.65  E-value=1.4e-13  Score=130.76  Aligned_cols=241  Identities=11%  Similarity=0.028  Sum_probs=168.1

Q ss_pred             cccEEEEEEccCCCEEEEEeCC------------------------CeEEEEECCCCcEEEEeC-CC--CceEEEEecCC
Q 009993          142 TEAVLTVFVLASAKLLFTSGYD------------------------SIVRMWHLEDGFSIASSK-PL--GCTIRAVAADK  194 (520)
Q Consensus       142 ~~~V~~l~~~~~~~~l~sgs~d------------------------g~v~vwd~~~~~~~~~~~-~~--~~~v~~~~~~~  194 (520)
                      -+.|.+++++|+|+++++.+.+                        ++|.+||..+++.+..+. ++  ...-.++.+++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4679999999999999988877                        479999999898877664 22  22334566899


Q ss_pred             CEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc---CCEEEEEe-cCCeEEEEECCCCcEE
Q 009993          195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGS-WDMTVRVWDRALLKCL  270 (520)
Q Consensus       195 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s-~dg~v~iwd~~~~~~~  270 (520)
                      +++++...++.|++||.......+..+......   -.-.++......++++   +..+++.+ .++.|++|| .+++.+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~---g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~  178 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP---GSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFV  178 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBC---CCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCC---CCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEE
Confidence            988888889999999975431111111000000   0002345578899994   34555554 589999999 567777


Q ss_pred             EEeeec-----------cCEEEEe--eC-CCEEEEEc-CCeEEEEECCCCeeeEEeec-ccccceEEEEecCCCCEEEE-
Q 009993          271 KVLRHS-----------DWVYGLA--PH-DTTVASTS-GSDVYIWDTNSGCLLTVVNG-AHVGNTKSLARSHTGDFLFT-  333 (520)
Q Consensus       271 ~~~~~~-----------~~v~~~~--~~-~~~l~~~~-d~~i~iwd~~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~t-  333 (520)
                      ..+...           .....++  ++ +.++++.. ++.|++||..+++.+..+.. .+...+..++++| +..+++ 
T Consensus       179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~  257 (329)
T 3fvz_A          179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVN  257 (329)
T ss_dssp             EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEE
T ss_pred             EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeC
Confidence            766421           1255555  66 56666666 78999999998988887742 3566788999999 333333 


Q ss_pred             ------EeCCCeEEEEEcccCccccceeeeeee---cCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993          334 ------GGEDGAIHMYEIINDCTEANVLLVATW---IPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       334 ------g~~dg~i~iwd~~~~~~~~~~~~~~~~---~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  393 (520)
                            ...+..|++||+.++      ..+..+   .++...+..|++++  ..+++...++.|++|++..
T Consensus       258 g~~~v~~~~~~~v~~~~~~~g------~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          258 GKPYFGDQEPVQGFVMNFSSG------EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CCCCTTCSCCCCEEEEETTTC------CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             CCEEeccCCCcEEEEEEcCCC------eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence                  334558999999888      455555   36677899999977  4777778899999999875

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.65  E-value=2e-14  Score=138.74  Aligned_cols=238  Identities=10%  Similarity=0.092  Sum_probs=154.6

Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCeEEEEECC-CCcEEEEeC--CCC-ceEEEEecCCCE--EEEEe-------------
Q 009993          141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLE-DGFSIASSK--PLG-CTIRAVAADKKL--LVAGG-------------  201 (520)
Q Consensus       141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~-~~~~~~~~~--~~~-~~v~~~~~~~~~--l~sg~-------------  201 (520)
                      +...+..++|+|+|++|++++.+ .|.+|++. +++......  .+. ..-.+++|+++.  ++++.             
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            33467889999999999999888 99999997 776543321  111 112355688984  45553             


Q ss_pred             CCCcEEEEEccc-CcceeeeccCCccccceEEe-ccCCCCeEEEEE--cCCEEEEEec-CCeEEEEECC-CCcEEE--Ee
Q 009993          202 TDGFIHCWRAVE-VLPHLFDISGSEKQNTQFRL-WEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDRA-LLKCLK--VL  273 (520)
Q Consensus       202 ~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~--~~~~l~s~s~-dg~v~iwd~~-~~~~~~--~~  273 (520)
                      .+|.+.+|++.. +..          ......+ ..+...+.+++|  ++++++++.. ++.|++||+. +++...  .+
T Consensus       117 ~~g~v~v~~~~~~g~~----------~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~  186 (365)
T 1jof_A          117 FAGYGNVFSVSETGKL----------EKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV  186 (365)
T ss_dssp             SCCEEEEEEECTTCCE----------EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred             CCceEEEEccCCCCcC----------cceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeE
Confidence            689999999863 321          0011111 135567889999  6778877654 6899999998 776532  23


Q ss_pred             e---eccCEEEEe--eCCCEEEEEc--CCeEEEEECC--CCeee---EEee---c---cccc------ceEEEE-ecCCC
Q 009993          274 R---HSDWVYGLA--PHDTTVASTS--GSDVYIWDTN--SGCLL---TVVN---G---AHVG------NTKSLA-RSHTG  328 (520)
Q Consensus       274 ~---~~~~v~~~~--~~~~~l~~~~--d~~i~iwd~~--~~~~~---~~~~---~---~~~~------~i~~l~-~s~~~  328 (520)
                      .   +...+..+.  +++++++++.  ++.|.+|++.  +++..   ..+.   .   +|..      .+..++ |+|+|
T Consensus       187 ~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG  266 (365)
T 1jof_A          187 DAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG  266 (365)
T ss_dssp             ECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS
T ss_pred             ecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC
Confidence            2   234565554  8998887766  6899999765  55542   1222   1   1222      588999 99999


Q ss_pred             CEEEEEeCCC------eEEEEEcc-cCccccceeeee-eecCCcCCEEEEEecC-----CEEEEEeCC-CcEEEEeCCc
Q 009993          329 DFLFTGGEDG------AIHMYEII-NDCTEANVLLVA-TWIPHTGPVNSLAFEF-----PWLVSAAGD-GKLSLIDVRK  393 (520)
Q Consensus       329 ~~l~tg~~dg------~i~iwd~~-~~~~~~~~~~~~-~~~~h~~~v~~l~~~~-----~~l~s~s~d-g~i~vwd~~~  393 (520)
                      ++|++++.+.      .|.+|++. ++..    ..+. ....+...+..++|+|     ++|++++.+ +.|.+|++..
T Consensus       267 ~~l~v~~~~~~~~~~~~i~v~~~~~~g~~----~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          267 KYMFASSRANKFELQGYIAGFKLRDCGSI----EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             SEEEEEEEESSTTSCCEEEEEEECTTSCE----EEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             CEEEEECCCCCCCCCCeEEEEEECCCCCE----EEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence            9888765432      89999996 3411    1111 1223333445566654     688888764 8999999875

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.65  E-value=1.5e-14  Score=140.69  Aligned_cols=302  Identities=11%  Similarity=0.031  Sum_probs=183.2

Q ss_pred             EEEECCCCcEEEEeCCCCceEE-------EEecCCCEEEEEeC-CCc--EEEEEcccCcceeeeccCCccccceEEeccC
Q 009993          167 RMWHLEDGFSIASSKPLGCTIR-------AVAADKKLLVAGGT-DGF--IHCWRAVEVLPHLFDISGSEKQNTQFRLWEH  236 (520)
Q Consensus       167 ~vwd~~~~~~~~~~~~~~~~v~-------~~~~~~~~l~sg~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h  236 (520)
                      ..+|..++..+..+..|.....       +++|||+.|+.++. +|.  |.+||+.++..             .....++
T Consensus        13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~-------------~~lt~~~   79 (388)
T 3pe7_A           13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA-------------TQLTEGR   79 (388)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEE-------------EECCCSS
T ss_pred             EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCce-------------EEeeeCC
Confidence            3457778888888877765544       47899999998887 674  77788776531             1222344


Q ss_pred             CCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEE----EEeeCCCEEEEE-----------------
Q 009993          237 EGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVY----GLAPHDTTVAST-----------------  292 (520)
Q Consensus       237 ~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~----~~~~~~~~l~~~-----------------  292 (520)
                      ...+....|  +++.|+.++.++.|++||+.+++...... +...+.    .+.+++..++..                 
T Consensus        80 ~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~  159 (388)
T 3pe7_A           80 GDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFH  159 (388)
T ss_dssp             CBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHH
T ss_pred             CCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhh
Confidence            444444556  88899999999999999999998776665 333232    234788888742                 


Q ss_pred             -----c-CCeEEEEECCCCeeeEEeecccccceEEEEecC-CCCEEEEEeCC------CeEEEEEcccCccccceeeeee
Q 009993          293 -----S-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH-TGDFLFTGGED------GAIHMYEIINDCTEANVLLVAT  359 (520)
Q Consensus       293 -----~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~tg~~d------g~i~iwd~~~~~~~~~~~~~~~  359 (520)
                           . +..|++||+.+++.....  .+...+..+.|+| +|+.|+....+      ..|.++|.....       ...
T Consensus       160 ~~~~~~~~~~l~~~d~~~g~~~~l~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-------~~~  230 (388)
T 3pe7_A          160 EFYFTKPCCRLMRVDLKTGESTVIL--QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-------MRK  230 (388)
T ss_dssp             HHGGGCCCEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-------CEE
T ss_pred             hhhccCCcceEEEEECCCCceEEee--cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-------eEE
Confidence                 1 367999999998765544  3666789999999 99988877654      367777876552       223


Q ss_pred             ecCCc--CCEEEEEecC--CEEEEEeC-CC----cEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEE
Q 009993          360 WIPHT--GPVNSLAFEF--PWLVSAAG-DG----KLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD  430 (520)
Q Consensus       360 ~~~h~--~~v~~l~~~~--~~l~s~s~-dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  430 (520)
                      +..+.  ..+....|+|  +.|+..+. ++    .|++||+.++...          .+..............  -..++
T Consensus       231 l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~----------~l~~~~~~~~~~~~~~--~~~~s  298 (388)
T 3pe7_A          231 VKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR----------QLTSMPACSHLMSNYD--GSLMV  298 (388)
T ss_dssp             SCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE----------EEEEECCEEEEEECTT--SSEEE
T ss_pred             eeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceE----------EEEcCCCceeeeecCC--CCeEc
Confidence            33333  3577888976  45544332 22    3999999875211          1111110000000011  12577


Q ss_pred             ecCCEEEEe---------cCCCeEEEEeCCchHhHHHHhhhhccc-ccchhhhhccceeeeccCCCcccccccccccCCC
Q 009993          431 IGADRIVCG---------GEEGIVRIWNFSQAFEIERRARALRGI-RLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPM  500 (520)
Q Consensus       431 ~~~~~l~sg---------~~Dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~g~~~~~~s~~~~~~~~  500 (520)
                      ++++.|+..         +.+..|++||+.++... ......... ............++|+|||++++..+-.      
T Consensus       299 pdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~------  371 (388)
T 3pe7_A          299 GDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV------  371 (388)
T ss_dssp             EEECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT------
T ss_pred             cCCCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEEEecC------
Confidence            888866543         55779999999876431 110000000 0000000124678999999999887642      


Q ss_pred             CCCcceeeec
Q 009993          501 NGNRRSVWHN  510 (520)
Q Consensus       501 ~~~~~~~~~~  510 (520)
                       .....+|..
T Consensus       372 -~g~~~l~~~  380 (388)
T 3pe7_A          372 -HGKPALYLA  380 (388)
T ss_dssp             -TSSCEEEEE
T ss_pred             -CCceeEEEE
Confidence             123467765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.65  E-value=2.4e-14  Score=136.93  Aligned_cols=188  Identities=12%  Similarity=0.056  Sum_probs=140.1

Q ss_pred             cEEEEEEccCCCEEE-EEeCCCeEEEEECCCCcEEEEeCCCC--------ceEEEEecCCCEEEEEeCC-----------
Q 009993          144 AVLTVFVLASAKLLF-TSGYDSIVRMWHLEDGFSIASSKPLG--------CTIRAVAADKKLLVAGGTD-----------  203 (520)
Q Consensus       144 ~V~~l~~~~~~~~l~-sgs~dg~v~vwd~~~~~~~~~~~~~~--------~~v~~~~~~~~~l~sg~~d-----------  203 (520)
                      .+..++|+|+|++++ ++..++.|.+||+.+++.+..+....        ..-.+++|+++++++++.+           
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  123 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  123 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence            577899999998655 55678999999999998877665322        2345678999999998865           


Q ss_pred             -CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeecc---
Q 009993          204 -GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSD---  277 (520)
Q Consensus       204 -g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~---  277 (520)
                       +.|.+||+.++..          ....... .+...+.+++|  +++ +++++.  .|.+||..+++.+..+....   
T Consensus       124 ~~~i~~~d~~~~~~----------~~~~~~~-~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~  189 (349)
T 1jmx_B          124 PPRLEVFSTADGLE----------AKPVRTF-PMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNR  189 (349)
T ss_dssp             CCEEEEEEGGGGGG----------BCCSEEE-ECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCC
T ss_pred             CCeEEEEECCCccc----------cceeeec-cCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCC
Confidence             8999999987531          1111222 23346788888  667 666544  49999999988776654211   


Q ss_pred             ------------------------------------------------------------------CEEE--Eee-CCCE
Q 009993          278 ------------------------------------------------------------------WVYG--LAP-HDTT  288 (520)
Q Consensus       278 ------------------------------------------------------------------~v~~--~~~-~~~~  288 (520)
                                                                                        .+.+  +++ ++++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~  269 (349)
T 1jmx_B          190 KGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ  269 (349)
T ss_dssp             TTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTE
T ss_pred             ccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCE
Confidence                                                                              1112  226 8888


Q ss_pred             EEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993          289 VASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  348 (520)
Q Consensus       289 l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~  348 (520)
                      ++++ ++.|.+||+.+++.+..+..  ...+.+++|+|++++|++++.++.|.+||+.+.
T Consensus       270 l~~~-~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          270 IYGV-LNRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             EEEE-ESEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             EEEE-cCeEEEEECccCeEEEEEcC--CCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence            8888 89999999999998887763  345779999999998888888999999999887

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.63  E-value=3e-14  Score=136.95  Aligned_cols=286  Identities=12%  Similarity=0.083  Sum_probs=180.4

Q ss_pred             CCCEEEEEe------CCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeC----------CCcEEEEEcccCcc
Q 009993          153 SAKLLFTSG------YDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGT----------DGFIHCWRAVEVLP  216 (520)
Q Consensus       153 ~~~~l~sgs------~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~----------dg~i~vwd~~~~~~  216 (520)
                      ++++++...      .|+.|.+||..+++.+..+..+..+-..++|++++++++..          ++.|.+||..+...
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~   93 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF   93 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE
Confidence            455565543      37899999999999988887766666677899999998863          67899999876531


Q ss_pred             eeeeccCCccccceEEecc------CCCCeEEEEE--cCCEEEEEec--CCeEEEEECCCCcEEEE-eeeccCE-EEEee
Q 009993          217 HLFDISGSEKQNTQFRLWE------HEGPITSLAL--DLTRIYSGSW--DMTVRVWDRALLKCLKV-LRHSDWV-YGLAP  284 (520)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~------h~~~v~~l~~--~~~~l~s~s~--dg~v~iwd~~~~~~~~~-~~~~~~v-~~~~~  284 (520)
                                   ...+..      +......+++  ++++|+++..  +++|.+||+.+++.+.. +...... ..+.|
T Consensus        94 -------------~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p  160 (361)
T 2oiz_A           94 -------------EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQP  160 (361)
T ss_dssp             -------------EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECT
T ss_pred             -------------EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcC
Confidence                         122211      2234556777  7889988874  58999999999998887 6643321 12335


Q ss_pred             CC-CEEEEEc-CCeEEEEECCC-CeeeEEee-----cccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceee
Q 009993          285 HD-TTVASTS-GSDVYIWDTNS-GCLLTVVN-----GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL  356 (520)
Q Consensus       285 ~~-~~l~~~~-d~~i~iwd~~~-~~~~~~~~-----~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~  356 (520)
                      ++ ..+++.+ ||.+.+|+... ++......     .....++ .+.+++++..++..+.++.|.++|+.....    ..
T Consensus       161 ~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~----~~  235 (361)
T 2oiz_A          161 NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEV----KV  235 (361)
T ss_dssp             TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSC----EE
T ss_pred             CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCc----ee
Confidence            44 4555555 89999999865 54432211     1112222 334467777778788899999999875521    11


Q ss_pred             eeeec--C----C----cCCEEEEEecC--CEEEEEeC-----------CCcEEEEeCCcccccCCCCCCCceeeeeecC
Q 009993          357 VATWI--P----H----TGPVNSLAFEF--PWLVSAAG-----------DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVE  413 (520)
Q Consensus       357 ~~~~~--~----h----~~~v~~l~~~~--~~l~s~s~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  413 (520)
                      ...+.  .    +    ......++|++  +.++++..           .+.|.+||+.+.+..                
T Consensus       236 ~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v----------------  299 (361)
T 2oiz_A          236 DGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV----------------  299 (361)
T ss_dssp             EEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE----------------
T ss_pred             cccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE----------------
Confidence            11110  0    0    01111256654  55555432           347999999875221                


Q ss_pred             CCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCch--HhHHHHhhhhcccccchhhhhccceeeeccCCC
Q 009993          414 PPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQA--FEIERRARALRGIRLENRMRRRKLQTEMSSKGG  486 (520)
Q Consensus       414 ~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~  486 (520)
                         ..+..+...-.++++++++|++++. +.|.+||..++  +.+.+...          .-+.+..++++|||+
T Consensus       300 ---~~i~~~~p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~----------~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          300 ---ARIPGRDALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEG----------AAEASLQVQFHPVGG  360 (361)
T ss_dssp             ---EEEECTTCCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETT----------SCSSEEEEEECCCSC
T ss_pred             ---EEEecCCeeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEecc----------CCCCcEEEEecCCCC
Confidence               1112222445577778888888887 99999999987  65433111          123457889999986

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.60  E-value=3.3e-14  Score=138.67  Aligned_cols=228  Identities=10%  Similarity=-0.021  Sum_probs=145.4

Q ss_pred             cEEEEEEccCCCEEEEEeCC---CeEEEEECCCCcEEEEeCCCCceE--EEEecCCCEEEEEeCCCcEEEEEcccCccee
Q 009993          144 AVLTVFVLASAKLLFTSGYD---SIVRMWHLEDGFSIASSKPLGCTI--RAVAADKKLLVAGGTDGFIHCWRAVEVLPHL  218 (520)
Q Consensus       144 ~V~~l~~~~~~~~l~sgs~d---g~v~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~  218 (520)
                      .+..++|+|||++|+.+..+   ..|.+||+.+++......++....  ..++|+++.|+.++.++.|.+||+.++....
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~  116 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV  116 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence            36778999999998877543   478889998887654443333222  4678999999999999999999988764221


Q ss_pred             eeccCCccccceEEeccCCCCeEE---E----------------EE--cCCEEEEE-----ecCCeEEEEECCCCcEEEE
Q 009993          219 FDISGSEKQNTQFRLWEHEGPITS---L----------------AL--DLTRIYSG-----SWDMTVRVWDRALLKCLKV  272 (520)
Q Consensus       219 ~~~~~~~~~~~~~~~~~h~~~v~~---l----------------~~--~~~~l~s~-----s~dg~v~iwd~~~~~~~~~  272 (520)
                      .             ...+......   +                .+  +++.++.+     ..+..|.+||+.+++....
T Consensus       117 ~-------------~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~  183 (396)
T 3c5m_A          117 I-------------YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI  183 (396)
T ss_dssp             E-------------EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE
T ss_pred             E-------------EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee
Confidence            1             1111111111   1                11  23333322     3556899999999887766


Q ss_pred             eeeccCEEEEe--e-CCCEEEEEc-C------CeEEEEECCCCeeeEEeeccc-ccceEEEEecCCCCEEEEEeCC----
Q 009993          273 LRHSDWVYGLA--P-HDTTVASTS-G------SDVYIWDTNSGCLLTVVNGAH-VGNTKSLARSHTGDFLFTGGED----  337 (520)
Q Consensus       273 ~~~~~~v~~~~--~-~~~~l~~~~-d------~~i~iwd~~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~tg~~d----  337 (520)
                      ..+...+..+.  | ++..++..+ +      ..|.+||+..++.. .+.... ...+..+.|+|+|+.|+.++.+    
T Consensus       184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  262 (396)
T 3c5m_A          184 HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQT  262 (396)
T ss_dssp             EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTC
T ss_pred             ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCc
Confidence            66666666655  6 677666554 2      36899998766533 232211 3357889999999987766543    


Q ss_pred             -CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEEe----------------CCCcEEEEeCCcc
Q 009993          338 -GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAA----------------GDGKLSLIDVRKL  394 (520)
Q Consensus       338 -g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s----------------~dg~i~vwd~~~~  394 (520)
                       +.|++||+.++..    ..+..+.+    .. +.|+|   .++++++                .++.|++||+.++
T Consensus       263 ~~~l~~~d~~~g~~----~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~  330 (396)
T 3c5m_A          263 DRVIYKANPETLEN----EEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK  330 (396)
T ss_dssp             CEEEEEECTTTCCE----EEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred             cceEEEEECCCCCe----EEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence             4599999987732    12222222    22 66754   5676654                3478999998764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.55  E-value=4.2e-12  Score=120.29  Aligned_cols=253  Identities=9%  Similarity=-0.001  Sum_probs=166.4

Q ss_pred             CCCeEEEEECCCCcEEEEeC------CCCceEEEEecCCC-EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEec
Q 009993          162 YDSIVRMWHLEDGFSIASSK------PLGCTIRAVAADKK-LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW  234 (520)
Q Consensus       162 ~dg~v~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                      .+++|.++|.++++....+.      ........+..++. .+++...++.|.+||..++.             ....+.
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~-------------~~~~i~   81 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFK-------------EVGRIT   81 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCC-------------EEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccE-------------EEEEcC
Confidence            48999999999998765441      12233444543444 44555557999999998763             222332


Q ss_pred             cCCCCeEEEEE-cCCEEEEEe-cCCeEEEEECCCCcEEEEeeecc------CEEEEeeCCCEEEEEc---CCeEEEEECC
Q 009993          235 EHEGPITSLAL-DLTRIYSGS-WDMTVRVWDRALLKCLKVLRHSD------WVYGLAPHDTTVASTS---GSDVYIWDTN  303 (520)
Q Consensus       235 ~h~~~v~~l~~-~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~------~v~~~~~~~~~l~~~~---d~~i~iwd~~  303 (520)
                       .......+++ .+..++.+. .++.|.+||..+++....+....      ....+..++..++++.   ++.|.++|+.
T Consensus        82 -~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~  160 (328)
T 3dsm_A           82 -GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTE  160 (328)
T ss_dssp             -CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETT
T ss_pred             -CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECC
Confidence             3456788888 444666666 78999999999999887776333      3344443444444442   6899999999


Q ss_pred             CCeeeEEeecccccceEEEEecCCCCEEEEEeCC----------CeEEEEEcccCccccceeeeeeecCC-cCCEEEEEe
Q 009993          304 SGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED----------GAIHMYEIINDCTEANVLLVATWIPH-TGPVNSLAF  372 (520)
Q Consensus       304 ~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~h-~~~v~~l~~  372 (520)
                      +++.+..+..  ......+.++|+|++++++..+          +.|.++|..+.      +....+... ...+..+++
T Consensus       161 t~~~~~~i~~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~------~v~~~~~~~~g~~p~~la~  232 (328)
T 3dsm_A          161 TDKVVDELTI--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF------TVEKQFKFKLGDWPSEVQL  232 (328)
T ss_dssp             TTEEEEEEEC--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT------EEEEEEECCTTCCCEEEEE
T ss_pred             CCeEEEEEEc--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC------eEEEEEecCCCCCceeEEE
Confidence            9998887763  3345688999999977776654          78999999887      344343322 236789999


Q ss_pred             cC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCccccc--CcceeeEEEEe-cCCEEEEe----cCCC
Q 009993          373 EF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH--GFECNLLSVDI-GADRIVCG----GEEG  443 (520)
Q Consensus       373 ~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~-~~~~l~sg----~~Dg  443 (520)
                      +|  +.|+++..  .|.+||..+......                 ..+.  +....-.++++ ++..+++.    ..++
T Consensus       233 ~~d~~~lyv~~~--~v~~~d~~t~~~~~~-----------------~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~  293 (328)
T 3dsm_A          233 NGTRDTLYWINN--DIWRMPVEADRVPVR-----------------PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQG  293 (328)
T ss_dssp             CTTSCEEEEESS--SEEEEETTCSSCCSS-----------------CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEE
T ss_pred             ecCCCEEEEEcc--EEEEEECCCCceeee-----------------eeecCCCCceEEEEEcCCCCeEEEEcccccccCC
Confidence            85  57776654  899999987532100                 0011  12223345555 33466666    6789


Q ss_pred             eEEEEeCCchHhH
Q 009993          444 IVRIWNFSQAFEI  456 (520)
Q Consensus       444 ~v~iwd~~~~~~~  456 (520)
                      .|.+||.. ++.+
T Consensus       294 ~V~v~d~~-g~~~  305 (328)
T 3dsm_A          294 IVYRYSPQ-GKLI  305 (328)
T ss_dssp             EEEEECTT-CCEE
T ss_pred             EEEEECCC-CCEE
Confidence            99999987 5443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.54  E-value=5.9e-12  Score=119.28  Aligned_cols=230  Identities=10%  Similarity=-0.035  Sum_probs=158.1

Q ss_pred             ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCC-CceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeec
Q 009993          143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPL-GCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDI  221 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  221 (520)
                      .....+.+. +++++++...++.|.+||..+++.+.++... ...-.++++++..+++...++.|.+||..++..     
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~-----  117 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEI-----  117 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEE-----
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeE-----
Confidence            445777774 4556666666899999999999998887533 233345557774444444899999999887632     


Q ss_pred             cCCccccceEEeccC-----CCCeEEEEEcCCEEEEEe--cCCeEEEEECCCCcEEEEeeeccCEEE--EeeCCCEEEEE
Q 009993          222 SGSEKQNTQFRLWEH-----EGPITSLALDLTRIYSGS--WDMTVRVWDRALLKCLKVLRHSDWVYG--LAPHDTTVAST  292 (520)
Q Consensus       222 ~~~~~~~~~~~~~~h-----~~~v~~l~~~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~  292 (520)
                              ...+...     ......++++++.++.+.  .+++|.++|..+++.+..+........  +.+++++++++
T Consensus       118 --------~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~  189 (328)
T 3dsm_A          118 --------TGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTIT  189 (328)
T ss_dssp             --------EEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEB
T ss_pred             --------EEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEE
Confidence                    1111111     113455666777777766  488999999999998888763333333  34778877776


Q ss_pred             c-C----------CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec
Q 009993          293 S-G----------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI  361 (520)
Q Consensus       293 ~-d----------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~  361 (520)
                      . +          +.|.++|..+++....+..........++++|+++.++++..  .|.+||..++....    ...+.
T Consensus       190 ~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~----~~~~~  263 (328)
T 3dsm_A          190 DGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPV----RPFLE  263 (328)
T ss_dssp             CCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCS----SCSBC
T ss_pred             CCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceee----eeeec
Confidence            6 4          689999999998877765322347899999999999888765  89999998773210    11111


Q ss_pred             CCcCCEEEEEecC---CEEEEE----eCCCcEEEEeCC
Q 009993          362 PHTGPVNSLAFEF---PWLVSA----AGDGKLSLIDVR  392 (520)
Q Consensus       362 ~h~~~v~~l~~~~---~~l~s~----s~dg~i~vwd~~  392 (520)
                      .+......++++|   ..+++.    ..++.|.+||..
T Consensus       264 ~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          264 FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            2245789999976   355555    568899999987

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.54  E-value=4.3e-12  Score=121.32  Aligned_cols=251  Identities=11%  Similarity=0.123  Sum_probs=159.0

Q ss_pred             ccEEEEEEccCCCEEEEEe---------CCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCC---Cc--EEE
Q 009993          143 EAVLTVFVLASAKLLFTSG---------YDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTD---GF--IHC  208 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~sgs---------~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~d---g~--i~v  208 (520)
                      ..+...++  ||+.++...         .++.|.+||+.+++... +  .......++|+|+.|+.++.+   +.  |.+
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l--~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~   89 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I--ENATMPRISPDGKKIAFMRANEEKKVSEIWV   89 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E--ESCEEEEECTTSSEEEEEEEETTTTEEEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c--ccCCCeEECCCCCEEEEEEeccCCCcceEEE
Confidence            45677777  888877642         26789999999886543 3  333445788999999887754   33  777


Q ss_pred             EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecC---------------------------CeE
Q 009993          209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD---------------------------MTV  259 (520)
Q Consensus       209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d---------------------------g~v  259 (520)
                      |++.++.              ...+..+.. +..+.|  +++.|+.++.+                           ..|
T Consensus        90 ~~~~~g~--------------~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l  154 (347)
T 2gop_A           90 ADLETLS--------------SKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTF  154 (347)
T ss_dssp             EETTTTE--------------EEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEE
T ss_pred             EECCCCc--------------eEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceE
Confidence            7776552              112222233 888999  77888877643                           579


Q ss_pred             EEEECCCCcEEEEeeeccCEEE--EeeCCCEEEEEc-C------C---eEEEEECCCCeeeEEeecccccceEEEEecCC
Q 009993          260 RVWDRALLKCLKVLRHSDWVYG--LAPHDTTVASTS-G------S---DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT  327 (520)
Q Consensus       260 ~iwd~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~-d------~---~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~  327 (520)
                      .+||+.+++.+..+... .+..  +++++ +++++. +      .   .|.++|  +++.. .+.. + ..+..+  +|+
T Consensus       155 ~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~-~-~~~~~~--spd  225 (347)
T 2gop_A          155 WIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEE-KMFE-K-VSFYAV--DSD  225 (347)
T ss_dssp             EEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEE-EEEE-E-ESEEEE--EEC
T ss_pred             EEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceE-Eecc-C-cceeeE--CCC
Confidence            99999988774444332 4444  44888 777665 3      1   355555  55543 3332 3 555554  999


Q ss_pred             CCEEEEEeCC--------CeEEEEEcccCccccceeeeeeecCCcCCEEE-EEecCCEEEEEeCCCcEEEEeCCcccccC
Q 009993          328 GDFLFTGGED--------GAIHMYEIINDCTEANVLLVATWIPHTGPVNS-LAFEFPWLVSAAGDGKLSLIDVRKLLRSG  398 (520)
Q Consensus       328 ~~~l~tg~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~l~s~s~dg~i~vwd~~~~~~~~  398 (520)
                      |+.|+.++.+        ..|.+||  ++      .......+|...+.. +.|+..++++++.++.++|| +.++    
T Consensus       226 g~~l~~~~~~~~~~~~~~~~l~~~d--~~------~~~~l~~~~~~~~~~~~~~sdg~~~~~~~~~~~~l~-~~~g----  292 (347)
T 2gop_A          226 GERILLYGKPEKKYMSEHNKLYIYD--GK------EVMGILDEVDRGVGQAKIKDGKVYFTLFEEGSVNLY-IWDG----  292 (347)
T ss_dssp             SSCEEEEECCSSSCCCSSCEEEEEC--SS------CEEESSTTCCSEEEEEEEETTEEEEEEEETTEEEEE-EESS----
T ss_pred             CCEEEEEEccccCCccccceEEEEC--CC------ceEeccccCCcccCCccEEcCcEEEEEecCCcEEEE-EcCC----
Confidence            9988877654        3677777  43      233334456677876 88863378888999999999 8632    


Q ss_pred             CCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeE-EEEeCC
Q 009993          399 RPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIV-RIWNFS  451 (520)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v-~iwd~~  451 (520)
                                     .... +..+...+.++.+++..+++++.++.. .+|.+.
T Consensus       293 ---------------~~~~-~~~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          293 ---------------EIKP-IAKGRHWIMGFDVDEIVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             ---------------SEEE-EECSSSEEEEEEESSSEEEEEECSSSCCEEEEES
T ss_pred             ---------------ceEE-EecCCCeEEeeeeeCcEEEEEcCCCChHHheEeC
Confidence                           1111 112244566666655666777777765 777765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.54  E-value=1.8e-12  Score=124.59  Aligned_cols=235  Identities=12%  Similarity=0.028  Sum_probs=157.3

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEe----------CCCeEEEEECCCCcEEEEeCCC--------CceEEEEecCCCE
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSG----------YDSIVRMWHLEDGFSIASSKPL--------GCTIRAVAADKKL  196 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs----------~dg~v~vwd~~~~~~~~~~~~~--------~~~v~~~~~~~~~  196 (520)
                      +.++..+..+  .++|+|||++++++.          .+++|.+||..+++.+..+...        ...-.+++|++++
T Consensus        44 ~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~  121 (361)
T 2oiz_A           44 LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKF  121 (361)
T ss_dssp             EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSE
T ss_pred             EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCE
Confidence            3455555555  899999999999886          3678999999999888776421        2234578899999


Q ss_pred             EEEEeC--CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--c-CCEEEEEecCCeEEEEECCC-CcEE
Q 009993          197 LVAGGT--DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D-LTRIYSGSWDMTVRVWDRAL-LKCL  270 (520)
Q Consensus       197 l~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~-~~~l~s~s~dg~v~iwd~~~-~~~~  270 (520)
                      |+++..  ++.|.+||+.++.             ....+..+.+. ..+.+  + +..+++.+.||.+.+|+... ++..
T Consensus       122 l~v~n~~~~~~v~v~d~~~~~-------------~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~  187 (361)
T 2oiz_A          122 IVLQNASPATSIGIVDVAKGD-------------YVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVA  187 (361)
T ss_dssp             EEEEEESSSEEEEEEETTTTE-------------EEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEE
T ss_pred             EEEECCCCCCeEEEEECCCCc-------------EEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEe
Confidence            998874  5899999998763             12220112111 11223  2 36788889999999999865 5544


Q ss_pred             EEe------e-eccCEE-EEeeCCCEEEEEc-CCeEEEEECCCCee--eEEeec-c----c----ccceEEEEecCCCCE
Q 009993          271 KVL------R-HSDWVY-GLAPHDTTVASTS-GSDVYIWDTNSGCL--LTVVNG-A----H----VGNTKSLARSHTGDF  330 (520)
Q Consensus       271 ~~~------~-~~~~v~-~~~~~~~~l~~~~-d~~i~iwd~~~~~~--~~~~~~-~----~----~~~i~~l~~s~~~~~  330 (520)
                      ...      . ...++. ...+++..++..+ ++.|.++|+..+..  ...+.. .    +    ......++|+|+++.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~  267 (361)
T 2oiz_A          188 SQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGR  267 (361)
T ss_dssp             EEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTE
T ss_pred             eeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCe
Confidence            221      1 111211 1235666666666 89999999876532  222110 0    0    111223789999888


Q ss_pred             EEEEeC-----------CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993          331 LFTGGE-----------DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       331 l~tg~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  394 (520)
                      ++++..           .+.|.+||+.+.      +.+.++..+.  +.+++|+|  ++|++++. +.|.+||..++
T Consensus       268 lyv~~~~~~~~~~~~~~~~~v~viD~~t~------~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          268 MYVFMHPDGKEGTHKFPAAEIWVMDTKTK------QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             EEEEEESSCCTTCTTCCCSEEEEEETTTT------EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred             EEEEEccCCCcccccCCCceEEEEECCCC------cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence            777643           348999999998      6777777776  89999976  68888876 99999999885

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.53  E-value=1.2e-10  Score=108.41  Aligned_cols=233  Identities=7%  Similarity=0.008  Sum_probs=156.7

Q ss_pred             hccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEe-CCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcccC
Q 009993          138 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS-KPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEV  214 (520)
Q Consensus       138 l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~~  214 (520)
                      +..+...+.+++++++|++.++...++.|.+||.. +...... ..+...+..+  .+++.+.++...++.|..||.. +
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g   87 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G   87 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence            34556789999999999988777668999999988 5543322 2233444444  4778877777768889999864 2


Q ss_pred             cceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEe-e-eccCEEEEe--eCCCE
Q 009993          215 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL-R-HSDWVYGLA--PHDTT  288 (520)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~-~~~~v~~~~--~~~~~  288 (520)
                      ..            ....+......+.++++  ++...++...++.|..||. +++..... . ....+..+.  +++++
T Consensus        88 ~~------------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l  154 (299)
T 2z2n_A           88 II------------KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNAL  154 (299)
T ss_dssp             CE------------EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCE
T ss_pred             cE------------EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCE
Confidence            11            11112224557888888  4556666666789999998 55544322 1 334566666  67777


Q ss_pred             EEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCE
Q 009993          289 VASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPV  367 (520)
Q Consensus       289 l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v  367 (520)
                      +++.. ++.|..||. +++............+..++++++|.++++...++.|.+||. ++.     ........+...+
T Consensus       155 ~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~-----~~~~~~~~~~~~~  227 (299)
T 2z2n_A          155 WFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE-----ITEFKIPTPNARP  227 (299)
T ss_dssp             EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC-----EEEEECSSTTCCE
T ss_pred             EEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc-----EEEEECCCCCCCc
Confidence            77776 689999999 665544322234556889999999998777777889999998 542     1112233455678


Q ss_pred             EEEEecC--CEEEEEeCCCcEEEEeCC
Q 009993          368 NSLAFEF--PWLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       368 ~~l~~~~--~~l~s~s~dg~i~vwd~~  392 (520)
                      .++++++  ..+++...++.|.+||..
T Consensus       228 ~~i~~~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          228 HAITAGAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             EEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred             eeEEECCCCCEEEeccCCceEEEECCC
Confidence            9999975  444444467899999983

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.52  E-value=1.7e-11  Score=113.75  Aligned_cols=232  Identities=11%  Similarity=0.145  Sum_probs=149.2

Q ss_pred             EEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc--CCEEEEEec--CCeEEEEE
Q 009993          188 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSW--DMTVRVWD  263 (520)
Q Consensus       188 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~--dg~v~iwd  263 (520)
                      .++.++++++++...++.|.+||........+...+        ...++...+..++++  ...++.+..  ++.|.+||
T Consensus        35 v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~--------~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d  106 (286)
T 1q7f_A           35 VAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECG--------KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN  106 (286)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBS--------SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             EEECCCCCEEEEECCCCEEEEECCCCcEEEEecccC--------CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence            345588888888888999999997532111100000        001345678899982  345555553  89999999


Q ss_pred             CCCCcEEEEee--eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeec-ccccceEEEEecCCCCEEEEEeCC
Q 009993          264 RALLKCLKVLR--HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG-AHVGNTKSLARSHTGDFLFTGGED  337 (520)
Q Consensus       264 ~~~~~~~~~~~--~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~tg~~d  337 (520)
                       .+++.+..+.  +...+.++.  ++++++++.. ++.|.+||.. ++.+..+.. .+...+..++++|+|+++++...+
T Consensus       107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~  184 (286)
T 1q7f_A          107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA  184 (286)
T ss_dssp             -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred             -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCC
Confidence             5677776664  334566665  7788777776 7899999964 555555532 344578999999999988888889


Q ss_pred             CeEEEEEcccCccccceeeeeeecC--CcCCEEEEEecC--CEEEEEeCCC-cEEEEeCCcccccCCCCCCCceeeeeec
Q 009993          338 GAIHMYEIINDCTEANVLLVATWIP--HTGPVNSLAFEF--PWLVSAAGDG-KLSLIDVRKLLRSGRPTSGKRVSRVIEV  412 (520)
Q Consensus       338 g~i~iwd~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~--~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~  412 (520)
                      +.|++||....       .+..+..  +...+..+++++  .++++...++ .|.+||.....          ...+.. 
T Consensus       185 ~~i~~~~~~g~-------~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~----------~~~~~~-  246 (286)
T 1q7f_A          185 HCVKVFNYEGQ-------YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQL----------ISALES-  246 (286)
T ss_dssp             TEEEEEETTCC-------EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCE----------EEEEEE-
T ss_pred             CEEEEEcCCCC-------EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCE----------EEEEcc-
Confidence            99999997443       3334433  346789999975  5666766675 99999964310          111100 


Q ss_pred             CCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCch
Q 009993          413 EPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       413 ~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~  453 (520)
                      .     .........++++++.++++ +.|++|++|++...
T Consensus       247 ~-----~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          247 K-----VKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             S-----SCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             c-----CCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            0     00011223455556656666 57999999998653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.51  E-value=5.7e-12  Score=132.69  Aligned_cols=242  Identities=9%  Similarity=-0.071  Sum_probs=163.1

Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCC-----eEEEEECCCCcEEEEeC-CCCceEEEEecCCCEEEEEeCCCc-------
Q 009993          139 YGHTEAVLTVFVLASAKLLFTSGYDS-----IVRMWHLEDGFSIASSK-PLGCTIRAVAADKKLLVAGGTDGF-------  205 (520)
Q Consensus       139 ~~h~~~V~~l~~~~~~~~l~sgs~dg-----~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~l~sg~~dg~-------  205 (520)
                      .+|...+..++|||||++|+.++.++     .|++||+.+++.+.... .....-.+++||++.|+.++.++.       
T Consensus       121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCcccccccc
Confidence            35666789999999999998776543     89999999998765322 222234578899999999988766       


Q ss_pred             ---------EEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec-----CCeEEEEECCC---
Q 009993          206 ---------IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-----DMTVRVWDRAL---  266 (520)
Q Consensus       206 ---------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-----dg~v~iwd~~~---  266 (520)
                               |++|++.++...         ...+.....|...+..+.|  ++++|+.++.     +..|.+||+.+   
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~---------~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~  271 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSE---------DILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESN  271 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGG---------CEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred             ccccCCCCEEEEEECCCCccc---------ceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccc
Confidence                     999998765310         0111122234556778888  7888887765     57899999986   


Q ss_pred             ---Cc-EEEEee-eccCE-EEEeeCCCEEEEEc--C---CeEEEEECCCCee--eEEeecccc-cceEEEEecCCCCEEE
Q 009993          267 ---LK-CLKVLR-HSDWV-YGLAPHDTTVASTS--G---SDVYIWDTNSGCL--LTVVNGAHV-GNTKSLARSHTGDFLF  332 (520)
Q Consensus       267 ---~~-~~~~~~-~~~~v-~~~~~~~~~l~~~~--d---~~i~iwd~~~~~~--~~~~~~~~~-~~i~~l~~s~~~~~l~  332 (520)
                         +. ....+. +...+ ..+.+++..++..+  +   ..|.+||+.++..  ...+...+. ..+..++|++++.+++
T Consensus       272 ~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~  351 (710)
T 2xdw_A          272 GITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL  351 (710)
T ss_dssp             SSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred             ccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence               42 233333 33333 34668888776655  2   3699999988742  234432222 2678899988888888


Q ss_pred             EEeCCCe--EEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEE-EEe---CCCcEEEEeCCccc
Q 009993          333 TGGEDGA--IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLV-SAA---GDGKLSLIDVRKLL  395 (520)
Q Consensus       333 tg~~dg~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~-s~s---~dg~i~vwd~~~~~  395 (520)
                      +...|+.  |.+|++.++      ..+..+..+.+.+..+.+++  +.++ +.+   ..++|.+||+.++.
T Consensus       352 ~~~~~g~~~l~~~~~~~g------~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          352 CYLHDVKNTLQLHDLATG------ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEETTEEEEEEEETTTC------CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEECCEEEEEEEECCCC------CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            8888986  555666555      34455666777888888865  3443 333   35789999997654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.51  E-value=4.7e-12  Score=121.05  Aligned_cols=220  Identities=11%  Similarity=0.003  Sum_probs=146.2

Q ss_pred             ccEEEEEEccCCCEEEEEeCC---C--eEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCC--------------
Q 009993          143 EAVLTVFVLASAKLLFTSGYD---S--IVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTD--------------  203 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~sgs~d---g--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~d--------------  203 (520)
                      ..+..++|+|||++|+.++.+   +  .|.+|++.+++.......+...-..++|+++.|+.++.+              
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~  138 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP  138 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESEEEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCCccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence            567889999999999987754   3  478889888876554433323334566999988887642              


Q ss_pred             -------------CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCC-------eEEE
Q 009993          204 -------------GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM-------TVRV  261 (520)
Q Consensus       204 -------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg-------~v~i  261 (520)
                                   ..|.+||+.++..             ...+.. . .+..+.|  ++ .+++++.++       ...+
T Consensus       139 ~~~~g~~~~~~~~~~l~~~d~~~~~~-------------~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l  202 (347)
T 2gop_A          139 AWFDDLGFFDGEKTTFWIFDTESEEV-------------IEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDI  202 (347)
T ss_dssp             CC---------CEEEEEEEETTTTEE-------------EEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEE
T ss_pred             eeecCcccccCccceEEEEECCCCeE-------------EeeecC-C-CcccccCCCCe-EEEEEecccccccccccccE
Confidence                         5688888876531             012222 2 5677788  55 666665542       3344


Q ss_pred             EECCCCcEEEEeeeccCEEEEeeCCCEEEEEc-C--------CeEEEEECCCCeeeEEeecccccceEE-EEecCCCCEE
Q 009993          262 WDRALLKCLKVLRHSDWVYGLAPHDTTVASTS-G--------SDVYIWDTNSGCLLTVVNGAHVGNTKS-LARSHTGDFL  331 (520)
Q Consensus       262 wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d--------~~i~iwd~~~~~~~~~~~~~~~~~i~~-l~~s~~~~~l  331 (520)
                      |.+.+++......+ ..+..++|+|+.++.++ +        ..|.+||  +++. ..+...+...+.. +.|+ ++ ++
T Consensus       203 ~~~d~~~~~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg-~~  276 (347)
T 2gop_A          203 YIWEDGKEEKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK-VY  276 (347)
T ss_dssp             EEEETTEEEEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE-EE
T ss_pred             EEeCCCceEEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc-EE
Confidence            44435554433335 66666789999887665 3        3688888  5544 3343356677886 8999 88 89


Q ss_pred             EEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcE-EEEeCC
Q 009993          332 FTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKL-SLIDVR  392 (520)
Q Consensus       332 ~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i-~vwd~~  392 (520)
                      ++++.++.+++| +.++      .. ..+..+...|.+++|++..+++++.++.. .+|.+.
T Consensus       277 ~~~~~~~~~~l~-~~~g------~~-~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          277 FTLFEEGSVNLY-IWDG------EI-KPIAKGRHWIMGFDVDEIVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEEETTEEEEE-EESS------SE-EEEECSSSEEEEEEESSSEEEEEECSSSCCEEEEES
T ss_pred             EEEecCCcEEEE-EcCC------ce-EEEecCCCeEEeeeeeCcEEEEEcCCCChHHheEeC
Confidence            999999999999 8743      22 23334577899999988666777777664 777664

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.51  E-value=7.1e-13  Score=139.19  Aligned_cols=241  Identities=10%  Similarity=-0.093  Sum_probs=159.7

Q ss_pred             ccccccEEEEEEccCCCEEE-----EEeCCCeEEEEECCCCcEE-E-EeCCCCceEEEEecCCCEEEEEeCCCc------
Q 009993          139 YGHTEAVLTVFVLASAKLLF-----TSGYDSIVRMWHLEDGFSI-A-SSKPLGCTIRAVAADKKLLVAGGTDGF------  205 (520)
Q Consensus       139 ~~h~~~V~~l~~~~~~~~l~-----sgs~dg~v~vwd~~~~~~~-~-~~~~~~~~v~~~~~~~~~l~sg~~dg~------  205 (520)
                      ++|...+.+++|||||++|+     .|+.+.+|++||+.+++.+ . .+......-.+++|||+.|+.++.|..      
T Consensus       117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~  196 (695)
T 2bkl_A          117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD  196 (695)
T ss_dssp             SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred             cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence            46777899999999999998     4555678999999999865 2 122222244578899999999998876      


Q ss_pred             -------EEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCC----eEEEEECCCCcEEEE
Q 009993          206 -------IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM----TVRVWDRALLKCLKV  272 (520)
Q Consensus       206 -------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg----~v~iwd~~~~~~~~~  272 (520)
                             |++|++.++...         ...+.....|...+..+.+  ++++|+.++.++    .|.+||..+++....
T Consensus       197 ~~~~~~~v~~~~l~t~~~~---------~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l  267 (695)
T 2bkl_A          197 ERPGYTTIRYHTLGTEPSK---------DTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLL  267 (695)
T ss_dssp             GGGGGCEEEEEETTSCGGG---------CEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEE
T ss_pred             cCCCCCEEEEEECCCCchh---------ceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEe
Confidence                   999998776310         1122223345567888888  778888777666    677777766654444


Q ss_pred             eeeccCEEE-EeeCCCEEEEEc----CCeEEEEECCCCee--eEEeeccc-ccceEEEEecCCCCEEEEEeCCCeEEEEE
Q 009993          273 LRHSDWVYG-LAPHDTTVASTS----GSDVYIWDTNSGCL--LTVVNGAH-VGNTKSLARSHTGDFLFTGGEDGAIHMYE  344 (520)
Q Consensus       273 ~~~~~~v~~-~~~~~~~l~~~~----d~~i~iwd~~~~~~--~~~~~~~~-~~~i~~l~~s~~~~~l~tg~~dg~i~iwd  344 (520)
                      ..+...+.. +.+++.+++.+.    ++.|.+||+.++..  ...+...+ ...+..++++ ++.++++...|+..++|.
T Consensus       268 ~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~  346 (695)
T 2bkl_A          268 VKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRV  346 (695)
T ss_dssp             EECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             ecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence            444433333 346777444443    36799999987753  23333223 4567888888 677888899999988887


Q ss_pred             cccCccccceeeeeeecCC-cCCEEEEEecC--CEEE-EEe---CCCcEEEEeCCcc
Q 009993          345 IINDCTEANVLLVATWIPH-TGPVNSLAFEF--PWLV-SAA---GDGKLSLIDVRKL  394 (520)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~--~~l~-s~s---~dg~i~vwd~~~~  394 (520)
                      +....     .....+..+ .+.+..+++++  +.++ +.+   ..++|++||+.++
T Consensus       347 ~~~~g-----~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g  398 (695)
T 2bkl_A          347 ATLKG-----KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG  398 (695)
T ss_dssp             EETTC-----CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred             EeCCC-----CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            66321     223334433 55677777765  4444 332   3478999999764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.50  E-value=7.3e-11  Score=119.32  Aligned_cols=313  Identities=12%  Similarity=0.033  Sum_probs=189.2

Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCC-CceEEEEecCCCEEEEEeCCCcEEEEEcc--cCcceeeeccCCccc
Q 009993          151 LASAKLLFTSGYDSIVRMWHLEDGFSIASSKPL-GCTIRAVAADKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQ  227 (520)
Q Consensus       151 ~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~sg~~dg~i~vwd~~--~~~~~~~~~~~~~~~  227 (520)
                      +|.+.++++...+++|.++|..+++.+.++... ......++++++++++++.|+.|.+||+.  +..            
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~------------  231 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT------------  231 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC------------
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc------------
Confidence            344567778888999999999999998887643 33355678999999999999999999985  331            


Q ss_pred             cceEEeccCCCCeEEEEEc------CCEEEEEe-cCCeEEEEECCCCcEEEEeeec------------cCEEEEe--eCC
Q 009993          228 NTQFRLWEHEGPITSLALD------LTRIYSGS-WDMTVRVWDRALLKCLKVLRHS------------DWVYGLA--PHD  286 (520)
Q Consensus       228 ~~~~~~~~h~~~v~~l~~~------~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~------------~~v~~~~--~~~  286 (520)
                       ....+.. ......++++      +++++++. .+++|.++|..+.+.+..+...            ..+..+.  +++
T Consensus       232 -~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~  309 (567)
T 1qks_A          232 -TVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR  309 (567)
T ss_dssp             -EEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred             -EeEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCC
Confidence             2233332 2234566764      56776665 4599999999999998887521            1455554  444


Q ss_pred             CEEEE-Ec-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEe-CCCeEEEEEcccCccccceeeeeeecCC
Q 009993          287 TTVAS-TS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDCTEANVLLVATWIPH  363 (520)
Q Consensus       287 ~~l~~-~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~h  363 (520)
                      ..++. .. +|.|.++|......+.............+.|+|+|++++++. .++.|.++|+.++...... .+..-..|
T Consensus       310 ~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i-~vgg~~Ph  388 (567)
T 1qks_A          310 PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE-DTGGQTPH  388 (567)
T ss_dssp             SEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE-ECSSSSBC
T ss_pred             CEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE-eccCcCCC
Confidence            44444 44 699999999876433322212344567889999999887665 5789999999988321111 11001234


Q ss_pred             cCCEEEEEecC--C-EEEEEe-CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccC--cceeeEEEEecCCEEE
Q 009993          364 TGPVNSLAFEF--P-WLVSAA-GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG--FECNLLSVDIGADRIV  437 (520)
Q Consensus       364 ~~~v~~l~~~~--~-~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~  437 (520)
                      .+.-..+ ++|  . ..+++. .++.|.++|..+......  .-+          ..+.+..  ...--...++++.++.
T Consensus       389 pg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~--~~k----------vv~~i~~~g~g~~~i~~~p~~~~l~  455 (567)
T 1qks_A          389 PGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDN--AWK----------ILDSFPALGGGSLFIKTHPNSQYLY  455 (567)
T ss_dssp             CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT--BTS----------EEEEEECSCSCCCCEECCTTCSEEE
T ss_pred             Cccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccc--cCE----------EEEEEecCCCCCEEEEeCCCCCeEE
Confidence            4322222 354  2 444543 568999999876311100  000          0111111  1112234567777666


Q ss_pred             EecC-------CCeEEEEeCCch-----HhH-HHHh-hhhcccccchhhhhccceeeeccCCCcccccccc
Q 009993          438 CGGE-------EGIVRIWNFSQA-----FEI-ERRA-RALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA  494 (520)
Q Consensus       438 sg~~-------Dg~v~iwd~~~~-----~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~  494 (520)
                      +...       ..+|.++|+.+.     ... +... ....++  . ..-+++.+++|+|+|+.+-.+...
T Consensus       456 v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~G~~~~~s~~~  523 (567)
T 1qks_A          456 VDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGI--T-EGQPRVVQGEFNKDGTEVWFSVWN  523 (567)
T ss_dssp             EECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTC--C-SSCCEEEEEEECTTSSEEEEEEEC
T ss_pred             EecCCCCCcccCceEEEEECCcccccccCCCcEEecccccccc--C-CCCcceEeeeECCCCCEEEEEeec
Confidence            5442       358999999865     110 0000 000000  0 012467899999999998776543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.50  E-value=1.9e-11  Score=112.40  Aligned_cols=202  Identities=12%  Similarity=-0.001  Sum_probs=146.4

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCC---ceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccc
Q 009993          153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG---CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNT  229 (520)
Q Consensus       153 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  229 (520)
                      .+++|++++.|+.|.+||.++|+.+.++..+.   ..-..+.++|++++  +.++.|..||. +++             .
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~-------------~   67 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR-------------E   67 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC-------------E
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC-------------E
Confidence            46789999999999999999999999987654   33445669999888  45778999997 553             2


Q ss_pred             eEEeccC-CCCeEEEEE--cCCEEEEEec-CCeEEEEECCCCcEEEEeeecc-------CE--EEEeeCCCEEEEEc-CC
Q 009993          230 QFRLWEH-EGPITSLAL--DLTRIYSGSW-DMTVRVWDRALLKCLKVLRHSD-------WV--YGLAPHDTTVASTS-GS  295 (520)
Q Consensus       230 ~~~~~~h-~~~v~~l~~--~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~-------~v--~~~~~~~~~l~~~~-d~  295 (520)
                      +..+..+ ...+.++.+  +++.+++.+. ++.|..+|. +++.+..+....       ..  ..+.++++++++.. ++
T Consensus        68 ~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~  146 (276)
T 3no2_A           68 LWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATS  146 (276)
T ss_dssp             EEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTT
T ss_pred             EEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCC
Confidence            2233322 235667776  8889998887 788888886 677777665211       11  23457899999988 89


Q ss_pred             eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCc------CCEEE
Q 009993          296 DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT------GPVNS  369 (520)
Q Consensus       296 ~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~------~~v~~  369 (520)
                      .|..||.. |+.+..+..  ...+.++.+.++|+.+++++.++.|..+|..++      +.+.++..+.      ..+..
T Consensus       147 ~v~~~d~~-G~~~w~~~~--~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG------~~~w~~~~~~~~~~~l~~~~~  217 (276)
T 3no2_A          147 EVREIAPN-GQLLNSVKL--SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESN------RIVRRVNANDIEGVQLFFVAQ  217 (276)
T ss_dssp             EEEEECTT-SCEEEEEEC--SSCCCEEEECTTSCEEEECBTTSEEEEECTTTC------CEEEEEEGGGSBSCCCSEEEE
T ss_pred             EEEEECCC-CCEEEEEEC--CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCC------cEEEEecCCCCCCcccccccc
Confidence            99999998 999988863  245667788899999999998999999999988      4555543321      22566


Q ss_pred             EEec--CCEEEEE
Q 009993          370 LAFE--FPWLVSA  380 (520)
Q Consensus       370 l~~~--~~~l~s~  380 (520)
                      +...  +..+++.
T Consensus       218 ~~~~~~G~i~v~~  230 (276)
T 3no2_A          218 LFPLQNGGLYICN  230 (276)
T ss_dssp             EEECTTSCEEEEE
T ss_pred             ceEcCCCCEEEEe
Confidence            6653  3455554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.50  E-value=8.4e-12  Score=116.45  Aligned_cols=233  Identities=12%  Similarity=0.013  Sum_probs=155.7

Q ss_pred             hhhccccccEEEEEEccCCC-EEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEE--EecCCCEEEEEeCCCcEEEEEcc
Q 009993          136 DVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRA--VAADKKLLVAGGTDGFIHCWRAV  212 (520)
Q Consensus       136 ~~l~~h~~~V~~l~~~~~~~-~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~vwd~~  212 (520)
                      ..+..+.....+++|+|+|+ +++++..++.|..|+..++  ...+..+...+.+  +.++++++++...++.|.+||..
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            34445666778999999998 7888888999999999887  4555444444444  45888888777777899999987


Q ss_pred             cCcceeeeccCCccccceEEecc-CCCCeEEEEE--cCCEEEE----Eec-------------CCeEEEEECCCCcEEEE
Q 009993          213 EVLPHLFDISGSEKQNTQFRLWE-HEGPITSLAL--DLTRIYS----GSW-------------DMTVRVWDRALLKCLKV  272 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~s----~s~-------------dg~v~iwd~~~~~~~~~  272 (520)
                      ++....+.          ....+ ....+.++++  +++.+++    |+.             .+.|..++.. ++....
T Consensus        99 ~g~~~~~~----------~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~  167 (296)
T 3e5z_A           99 GGEWESIA----------DSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAP  167 (296)
T ss_dssp             TCCEEEEE----------CEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEE
T ss_pred             CCcEEEEe----------eccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEe
Confidence            66422110          00011 1234567778  5666776    331             3466666665 544433


Q ss_pred             eeeccCEEEEe--eCCCEEEEEc-CCeEEEEECC-CCee---eEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEc
Q 009993          273 LRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTN-SGCL---LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI  345 (520)
Q Consensus       273 ~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~-~~~~---~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~  345 (520)
                      ..+......+.  ++++.+++.. ++.|.+||+. ++..   ...+ ..+...+..++++++|+++++.  ++.|.+||.
T Consensus       168 ~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~  244 (296)
T 3e5z_A          168 IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP  244 (296)
T ss_dssp             ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred             ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence            34444555555  8898886666 7899999987 4544   3334 3455667789999999876666  888999998


Q ss_pred             ccCccccceeeeeeecCCcCCEEEEEec-C--CEEEEEeCCCcEEEEeCCc
Q 009993          346 INDCTEANVLLVATWIPHTGPVNSLAFE-F--PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       346 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~--~~l~s~s~dg~i~vwd~~~  393 (520)
                      . +      ..+..+..+.. +++++|. +  +.|++++.++ +.-++..+
T Consensus       245 ~-g------~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~  286 (296)
T 3e5z_A          245 D-G------DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV  286 (296)
T ss_dssp             T-S------CEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred             C-C------CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence            6 4      34555666666 8999993 4  4788888764 44455544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.49  E-value=2.3e-12  Score=125.50  Aligned_cols=283  Identities=9%  Similarity=-0.003  Sum_probs=167.9

Q ss_pred             EEEECCCCcEEEEeCCCCce-------EEEEecCCCEEEEEeCC---CcEEEEEcccCcceeeeccCCccccceEEeccC
Q 009993          167 RMWHLEDGFSIASSKPLGCT-------IRAVAADKKLLVAGGTD---GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH  236 (520)
Q Consensus       167 ~vwd~~~~~~~~~~~~~~~~-------v~~~~~~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h  236 (520)
                      ...|..++..+..+..+...       -.+++|+|+.|+.....   ..|.+||+.++..              ..+..+
T Consensus        13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~--------------~~l~~~   78 (396)
T 3c5m_A           13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA--------------VQLTEG   78 (396)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE--------------EECCCS
T ss_pred             eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE--------------EEeecC
Confidence            34477788777776554322       23567999998777543   3678888776531              122222


Q ss_pred             CCC-eEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEE---------------------EeeCCCEEEE
Q 009993          237 EGP-ITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYG---------------------LAPHDTTVAS  291 (520)
Q Consensus       237 ~~~-v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~---------------------~~~~~~~l~~  291 (520)
                      ... ...+.|  ++++|+.++.++.|++||+.+++...... +......                     +.|+++.++.
T Consensus        79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~  158 (396)
T 3c5m_A           79 KGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKF  158 (396)
T ss_dssp             SCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHH
T ss_pred             CCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceee
Confidence            222 222455  78899999999999999999887665554 2222111                     1244444433


Q ss_pred             E-----c-CCeEEEEECCCCeeeEEeecccccceEEEEecC-CCCEEEEEeCC------CeEEEEEcccCccccceeeee
Q 009993          292 T-----S-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH-TGDFLFTGGED------GAIHMYEIINDCTEANVLLVA  358 (520)
Q Consensus       292 ~-----~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~tg~~d------g~i~iwd~~~~~~~~~~~~~~  358 (520)
                      .     . +..|++||+.+++.....  .+...+..+.|+| +++.|+..+.+      ..|.+||+..+.       ..
T Consensus       159 ~~~~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-------~~  229 (396)
T 3c5m_A          159 AEFYHTNPTCRLIKVDIETGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-------VR  229 (396)
T ss_dssp             HHHHHTCCCEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-------CE
T ss_pred             eeeccCCCcceEEEEECCCCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-------ee
Confidence            2     2 567999999988765554  3667789999999 78877766543      358888876552       12


Q ss_pred             eecCC--cCCEEEEEecC--CEEEEEeCC-----CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEE
Q 009993          359 TWIPH--TGPVNSLAFEF--PWLVSAAGD-----GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSV  429 (520)
Q Consensus       359 ~~~~h--~~~v~~l~~~~--~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  429 (520)
                      .+..+  ...+..+.|+|  ++|+.++.+     +.|++||+.++...          .+..       ..++  . ..+
T Consensus       230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~----------~l~~-------~~~~--~-~~~  289 (396)
T 3c5m_A          230 KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENE----------EVMV-------MPPC--S-HLM  289 (396)
T ss_dssp             ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEE----------EEEE-------CCSE--E-EEE
T ss_pred             EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeE----------Eeee-------CCCC--C-CCc
Confidence            22222  23578889976  566666543     44999999764211          0100       1111  1 566


Q ss_pred             Ee-cCCEEEEec----------------CCCeEEEEeCCchHhHHHHhhhhccccc-chhhhhccceeeeccCCCccccc
Q 009993          430 DI-GADRIVCGG----------------EEGIVRIWNFSQAFEIERRARALRGIRL-ENRMRRRKLQTEMSSKGGRTDQC  491 (520)
Q Consensus       430 ~~-~~~~l~sg~----------------~Dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~g~~~~~~  491 (520)
                      ++ +++++++++                .++.|++||+.++... ........... ..........+.|+|||++++.+
T Consensus       290 s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  368 (396)
T 3c5m_A          290 SNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFT  368 (396)
T ss_dssp             ECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEE
T ss_pred             cCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEE
Confidence            77 788777654                3578999999876421 10000000000 00001123557899999998877


Q ss_pred             cc
Q 009993          492 SV  493 (520)
Q Consensus       492 s~  493 (520)
                      +.
T Consensus       369 s~  370 (396)
T 3c5m_A          369 SD  370 (396)
T ss_dssp             EC
T ss_pred             ec
Confidence            64

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.48  E-value=1.2e-11  Score=117.40  Aligned_cols=231  Identities=11%  Similarity=0.075  Sum_probs=153.8

Q ss_pred             ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEE--EEecCCCEEEEEeCCCcEEEEEcccCcceeee
Q 009993          143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR--AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD  220 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  220 (520)
                      ..|.++.|++++..++..+.++.++.|   .++....+..+.....  ++++++++++++..++.|.+||..++..    
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~----   78 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI----   78 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE----
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE----
Confidence            456778899888877777888999999   3455555554443333  4558898888888899999999876531    


Q ss_pred             ccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecC----CeEEEEECCCCcEEEEee---eccCEEEEe--eCCCEE
Q 009993          221 ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD----MTVRVWDRALLKCLKVLR---HSDWVYGLA--PHDTTV  289 (520)
Q Consensus       221 ~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~---~~~~v~~~~--~~~~~l  289 (520)
                               ......+...+.++++  +++.+++...+    +.|.+||..++.....+.   ....+.++.  ++++++
T Consensus        79 ---------~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~  149 (333)
T 2dg1_A           79 ---------KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFY  149 (333)
T ss_dssp             ---------EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEE
T ss_pred             ---------EEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEE
Confidence                     1111245678999999  55666666655    689999998877653332   334566665  778887


Q ss_pred             EEEcC-------CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEE-EEeCCCeEEEEEcccC-ccccce--eeee
Q 009993          290 ASTSG-------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLF-TGGEDGAIHMYEIIND-CTEANV--LLVA  358 (520)
Q Consensus       290 ~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~-tg~~dg~i~iwd~~~~-~~~~~~--~~~~  358 (520)
                      ++...       +.|..+|..+++.....  .....+..++|+|+++.++ +.+.++.|.+||+.+. ......  ....
T Consensus       150 v~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~  227 (333)
T 2dg1_A          150 FTDFRGYSTNPLGGVYYVSPDFRTVTPII--QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY  227 (333)
T ss_dssp             EEECCCBTTBCCEEEEEECTTSCCEEEEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE
T ss_pred             EEeccccccCCCceEEEEeCCCCEEEEee--cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEE
Confidence            77653       56777777665543332  2345678999999998654 4556789999999642 111100  0111


Q ss_pred             eecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCC
Q 009993          359 TWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       359 ~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~  392 (520)
                      .+.++ ..+..+++++  +++++...++.|.+||..
T Consensus       228 ~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          228 YFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             ECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             ecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence            22222 4678899975  566666678899999984

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.48  E-value=4e-12  Score=132.85  Aligned_cols=226  Identities=11%  Similarity=0.020  Sum_probs=149.3

Q ss_pred             EEEEc--cCCCE-EEEEeC-CCeEEEEECC--C-CcEEEEeCC-----CCceE--EEEecCCCEEEEEeCC---------
Q 009993          147 TVFVL--ASAKL-LFTSGY-DSIVRMWHLE--D-GFSIASSKP-----LGCTI--RAVAADKKLLVAGGTD---------  203 (520)
Q Consensus       147 ~l~~~--~~~~~-l~sgs~-dg~v~vwd~~--~-~~~~~~~~~-----~~~~v--~~~~~~~~~l~sg~~d---------  203 (520)
                      ...|+  |||+. |+.++. +..|.+|++.  . +. ...+..     |...+  .+++|||+.|++++.+         
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~  159 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV  159 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence            55565  99998 776554 5667777765  2 43 344444     44444  4567999999998877         


Q ss_pred             -CcEEEEEccc------CcceeeeccCCccccceEEec-cCCCCeEEEEE--cCCEEEEEecCC--------eEEEEECC
Q 009993          204 -GFIHCWRAVE------VLPHLFDISGSEKQNTQFRLW-EHEGPITSLAL--DLTRIYSGSWDM--------TVRVWDRA  265 (520)
Q Consensus       204 -g~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s~s~dg--------~v~iwd~~  265 (520)
                       ..|.+||+.+      +.              ...+. .+...+..++|  ||++|+.++.++        .|++||+.
T Consensus       160 ~~~i~~~~~~~~~~~~~~~--------------~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~  225 (662)
T 3azo_A          160 RRFLAAVPLDGSAAADRSA--------------VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVT  225 (662)
T ss_dssp             EEEEEEEETTSTTTTCGGG--------------SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEEC
T ss_pred             eeEEEEEECCCCccccCCc--------------eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEEC
Confidence             5899999876      32              22333 45566777778  888998887653        79999998


Q ss_pred             -CC---cEEEEee-eccCEEEEe--eCCCEEEEEc-CC--eEEEEECCCCeeeEEeecccccc--------eEEEEecCC
Q 009993          266 -LL---KCLKVLR-HSDWVYGLA--PHDTTVASTS-GS--DVYIWDTNSGCLLTVVNGAHVGN--------TKSLARSHT  327 (520)
Q Consensus       266 -~~---~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~--------i~~l~~s~~  327 (520)
                       ++   +...... +...+..+.  +++++++++. ++  .|.+||+.+++...... .+...        +..++|+|+
T Consensus       226 ~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~~~~~~p~w~~~~~~~~~~~~  304 (662)
T 3azo_A          226 EDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR-REEEFAGPLWTPGMRWFAPLAN  304 (662)
T ss_dssp             TTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC-CSSBSSCCCCSTTCCSEEECTT
T ss_pred             CCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc-ccccccCccccccCceEeEeCC
Confidence             56   3433333 356777665  8899777777 66  67788877776543332 22222        567899999


Q ss_pred             CCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEE-EecCCE--EEEEeCCCc--EEEEeCCcc
Q 009993          328 GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL-AFEFPW--LVSAAGDGK--LSLIDVRKL  394 (520)
Q Consensus       328 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l-~~~~~~--l~s~s~dg~--i~vwd~~~~  394 (520)
                      +.++++++. +.+++|.+....     ..+..+..|...+..+ +++++.  +++++.+..  |.+||+.++
T Consensus       305 ~~~~~~~~~-~~~~l~~~d~~~-----~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g  370 (662)
T 3azo_A          305 GLIAVVHGK-GAAVLGILDPES-----GELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG  370 (662)
T ss_dssp             SCEEEEEBS-SSCEEEEEETTT-----TEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred             CEEEEEEEc-CccEEEEEECCC-----CcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            999999998 999999554321     1245666777788888 787753  334455544  555565543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.48  E-value=4.4e-11  Score=113.58  Aligned_cols=238  Identities=9%  Similarity=-0.012  Sum_probs=153.6

Q ss_pred             CcccHH-HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEE--ecCCCEEEEEeCC
Q 009993          127 DDKSWK-ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGTD  203 (520)
Q Consensus       127 ~~~~W~-~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~d  203 (520)
                      ..+.|. .....+.++...+.+++|+++|++++++..++.|.+||..+++.......+...+.++  +++++++++...+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~  107 (333)
T 2dg1_A           28 ELQTITAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGD  107 (333)
T ss_dssp             GSCEEECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTT
T ss_pred             cCcccccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCC
Confidence            334553 2234566777788999999999988888899999999998887655443444445554  4788877777666


Q ss_pred             ----CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec------CCeEEEEECCCCcEEE
Q 009993          204 ----GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW------DMTVRVWDRALLKCLK  271 (520)
Q Consensus       204 ----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~------dg~v~iwd~~~~~~~~  271 (520)
                          +.|.+||..++....+           .....+...+.++++  +++.+++...      .+.|..+|..+++...
T Consensus       108 ~~~~~~i~~~d~~~~~~~~~-----------~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~  176 (333)
T 2dg1_A          108 FKSTGGIFAATENGDNLQDI-----------IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP  176 (333)
T ss_dssp             SSSCCEEEEECTTSCSCEEE-----------ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE
T ss_pred             CCCCceEEEEeCCCCEEEEE-----------EccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE
Confidence                6899999876532100           000123457888998  4555555443      3567777766655544


Q ss_pred             EeeeccCEEEEe--eCCCEEEEE-c-CCeEEEEECCC-CeeeEEe------e-cccccceEEEEecCCCCEEEEEeCCCe
Q 009993          272 VLRHSDWVYGLA--PHDTTVAST-S-GSDVYIWDTNS-GCLLTVV------N-GAHVGNTKSLARSHTGDFLFTGGEDGA  339 (520)
Q Consensus       272 ~~~~~~~v~~~~--~~~~~l~~~-~-d~~i~iwd~~~-~~~~~~~------~-~~~~~~i~~l~~s~~~~~l~tg~~dg~  339 (520)
                      .......+..+.  ++++.++.+ . ++.|.+||+.+ +.....+      . .++ ..+..++++++|+++++...++.
T Consensus       177 ~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~  255 (333)
T 2dg1_A          177 IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGR  255 (333)
T ss_dssp             EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTE
T ss_pred             eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCE
Confidence            333334455554  788755544 4 78999999964 3322211      0 111 36788999999998888888899


Q ss_pred             EEEEEcccCccccceeeeeeecCCc------CCEEEEEecC--CEEEEEeCC
Q 009993          340 IHMYEIINDCTEANVLLVATWIPHT------GPVNSLAFEF--PWLVSAAGD  383 (520)
Q Consensus       340 i~iwd~~~~~~~~~~~~~~~~~~h~------~~v~~l~~~~--~~l~s~s~d  383 (520)
                      |.+||.. +      ..+..+..+.      ..+.+++|++  ..|+.++.+
T Consensus       256 v~~~d~~-g------~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          256 VLVFNKR-G------YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EEEECTT-S------CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             EEEECCC-C------CEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            9999984 3      2233333322      2678899965  466655554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.47  E-value=4.4e-11  Score=115.74  Aligned_cols=265  Identities=9%  Similarity=0.034  Sum_probs=173.1

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEeCCC----------CceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeecc
Q 009993          153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPL----------GCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS  222 (520)
Q Consensus       153 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~----------~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  222 (520)
                      .+..++.++.++.|..+|..+|+.+......          .........++..+++++.++.|..+|..++... +   
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~-W---  127 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVA-W---  127 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEE-E---
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEE-E---
Confidence            3667888888999999999999988766542          1222334456778889999999999999887521 1   


Q ss_pred             CCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEE------EEeeCCCEEEEEc-CC
Q 009993          223 GSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVY------GLAPHDTTVASTS-GS  295 (520)
Q Consensus       223 ~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~------~~~~~~~~l~~~~-d~  295 (520)
                               ...............++.++.++.++.|..+|..+++.+........+.      .....+..++++. ++
T Consensus       128 ---------~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g  198 (376)
T 3q7m_A          128 ---------QTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNG  198 (376)
T ss_dssp             ---------EEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTT
T ss_pred             ---------EEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCC
Confidence                     1111111111223456788899999999999999999888776443332      1122345566666 89


Q ss_pred             eEEEEECCCCeeeEEeecccccc---eEE---EEecC--CCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCE
Q 009993          296 DVYIWDTNSGCLLTVVNGAHVGN---TKS---LARSH--TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPV  367 (520)
Q Consensus       296 ~i~iwd~~~~~~~~~~~~~~~~~---i~~---l~~s~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v  367 (520)
                      .+..+|..+++.+..........   +..   +...|  .+..++.++.++.+..+|..++      +.+....  ....
T Consensus       199 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG------~~~w~~~--~~~~  270 (376)
T 3q7m_A          199 RVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG------QIMWKRE--LGSV  270 (376)
T ss_dssp             EEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC------CEEEEEC--CCCE
T ss_pred             EEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC------cEEeecc--CCCC
Confidence            99999999999887765321100   000   11111  3567888889999999999988      3333332  2345


Q ss_pred             EEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEE
Q 009993          368 NSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRI  447 (520)
Q Consensus       368 ~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~i  447 (520)
                      ..+..+...++.++.++.|..+|..++......            ..    ...  .........+..|+.++.+|.|.+
T Consensus       271 ~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~------------~~----~~~--~~~~~~~~~~~~l~v~~~~g~l~~  332 (376)
T 3q7m_A          271 NDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQ------------SD----LLH--RLLTSPVLYNGNLVVGDSEGYLHW  332 (376)
T ss_dssp             EEEEEETTEEEEEETTCCEEEEETTTCCEEEEE------------CT----TTT--SCCCCCEEETTEEEEECTTSEEEE
T ss_pred             CCceEECCEEEEEcCCCeEEEEECCCCcEEEee------------cc----cCC--CcccCCEEECCEEEEEeCCCeEEE
Confidence            666777889999999999999999875332110            00    000  001111223678889999999999


Q ss_pred             EeCCchHhH
Q 009993          448 WNFSQAFEI  456 (520)
Q Consensus       448 wd~~~~~~~  456 (520)
                      +|..+++.+
T Consensus       333 ~d~~tG~~~  341 (376)
T 3q7m_A          333 INVEDGRFV  341 (376)
T ss_dssp             EETTTCCEE
T ss_pred             EECCCCcEE
Confidence            999987643

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.46  E-value=1.3e-11  Score=130.66  Aligned_cols=244  Identities=9%  Similarity=0.007  Sum_probs=147.4

Q ss_pred             CCCcccHH----Hhhhhhcccccc-----EEEEEEccCCCEEEEEeCC---------CeEEEEECCCCcEEEEeCCCCce
Q 009993          125 FSDDKSWK----ELIDVLYGHTEA-----VLTVFVLASAKLLFTSGYD---------SIVRMWHLEDGFSIASSKPLGCT  186 (520)
Q Consensus       125 ~~~~~~W~----~~~~~l~~h~~~-----V~~l~~~~~~~~l~sgs~d---------g~v~vwd~~~~~~~~~~~~~~~~  186 (520)
                      +.....|+    +....+.+|...     ...++|||||++|+.++.+         +.+.+||+.+++... +..+...
T Consensus        35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~  113 (740)
T 4a5s_A           35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNN  113 (740)
T ss_dssp             TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTT
T ss_pred             CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCc
Confidence            34456665    223445566532     3447899999999999876         566799999987543 4444443


Q ss_pred             --EEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCC---------CCeEEEEE--cCCEEEEE
Q 009993          187 --IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE---------GPITSLAL--DLTRIYSG  253 (520)
Q Consensus       187 --v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~l~~--~~~~l~s~  253 (520)
                        -.+++|||+.|+.+. |+.|++|++.++........+..    ...+.++.         +....+.|  ||++|+.+
T Consensus       114 ~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~----~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~  188 (740)
T 4a5s_A          114 TQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKE----DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA  188 (740)
T ss_dssp             EEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBT----TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred             ceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCc----cceecCcccccccchhcCCCcceEECCCCCEEEEE
Confidence              346679999999885 68999999987753322111110    01112222         12234667  77888776


Q ss_pred             ecCC------------------------------------eEEEEECCC---C---cEEEEee------eccCEEEEe--
Q 009993          254 SWDM------------------------------------TVRVWDRAL---L---KCLKVLR------HSDWVYGLA--  283 (520)
Q Consensus       254 s~dg------------------------------------~v~iwd~~~---~---~~~~~~~------~~~~v~~~~--  283 (520)
                      +.|.                                    +|++||+.+   +   +......      +...+..++  
T Consensus       189 ~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ws  268 (740)
T 4a5s_A          189 QFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWA  268 (740)
T ss_dssp             EEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEE
T ss_pred             EEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEe
Confidence            5332                                    588899988   7   3333222      444566554  


Q ss_pred             eCCCEEEEEc-C----CeEEEEECCCCe----e---eEEeecccccceE-----EEEecCCCCEEE-EEeC-CC--eEEE
Q 009993          284 PHDTTVASTS-G----SDVYIWDTNSGC----L---LTVVNGAHVGNTK-----SLARSHTGDFLF-TGGE-DG--AIHM  342 (520)
Q Consensus       284 ~~~~~l~~~~-d----~~i~iwd~~~~~----~---~~~~~~~~~~~i~-----~l~~s~~~~~l~-tg~~-dg--~i~i  342 (520)
                      |+++.++... .    ..|.+||+.+++    +   ...+..+|...+.     ...|+|||+.++ ..+. +|  .|++
T Consensus       269 pdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~  348 (740)
T 4a5s_A          269 TQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICY  348 (740)
T ss_dssp             ETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEE
T ss_pred             CCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEE
Confidence            8998766553 2    369999999887    2   1222223554443     688999999877 5554 44  5778


Q ss_pred             EEcccCccccceeeeeeecCCcCCEEEEE-ecCCEEEEEe
Q 009993          343 YEIINDCTEANVLLVATWIPHTGPVNSLA-FEFPWLVSAA  381 (520)
Q Consensus       343 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~-~~~~~l~s~s  381 (520)
                      ||+.++      ... .+......|..+. ++++.|+..+
T Consensus       349 ~~~~~~------~~~-~lT~g~~~v~~~~~~d~~~i~f~~  381 (740)
T 4a5s_A          349 FQIDKK------DCT-FITKGTWEVIGIEALTSDYLYYIS  381 (740)
T ss_dssp             EETTCS------SCE-ESCCSSSCEEEEEEECSSEEEEEE
T ss_pred             EECCCC------ceE-ecccCCEEEEEEEEEeCCEEEEEE
Confidence            888766      222 2333344555544 6766554443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.45  E-value=1.3e-10  Score=110.20  Aligned_cols=229  Identities=13%  Similarity=0.037  Sum_probs=153.1

Q ss_pred             EEEecCCCEEEEEeCC------------------------CcEEEEEcccCcceeeeccCCccccceEEe-ccCCCCeEE
Q 009993          188 RAVAADKKLLVAGGTD------------------------GFIHCWRAVEVLPHLFDISGSEKQNTQFRL-WEHEGPITS  242 (520)
Q Consensus       188 ~~~~~~~~~l~sg~~d------------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~  242 (520)
                      .+++++|+++++...+                        +.|.+||..++..             .... .++......
T Consensus        29 va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~-------------~~~~~~~~~~~p~g   95 (329)
T 3fvz_A           29 VALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI-------------LQSSGKNLFYLPHG   95 (329)
T ss_dssp             EEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE-------------EEEECTTTCSSEEE
T ss_pred             EEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE-------------EeccCCCccCCceE
Confidence            3455788888777766                        4789998876631             1112 234457888


Q ss_pred             EEE--cCCEEEEEecCCeEEEEECCCCc-EEEEee----------eccCEEEEe--e-CCCEEEEEc--CCeEEEEECCC
Q 009993          243 LAL--DLTRIYSGSWDMTVRVWDRALLK-CLKVLR----------HSDWVYGLA--P-HDTTVASTS--GSDVYIWDTNS  304 (520)
Q Consensus       243 l~~--~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~----------~~~~v~~~~--~-~~~~l~~~~--d~~i~iwd~~~  304 (520)
                      +++  +++.+++...++.|++||..... .+..+.          +......++  + ++.++++.+  ++.|++|| .+
T Consensus        96 ia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~  174 (329)
T 3fvz_A           96 LSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PS  174 (329)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TT
T ss_pred             EEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CC
Confidence            999  56778888888999999986542 444442          122456665  6 678888874  78999999 56


Q ss_pred             CeeeEEeec---------ccccceEEEEecCC-CCEEEEEeCCCeEEEEEcccCccccceeeeeee--cCCcCCEEEEEe
Q 009993          305 GCLLTVVNG---------AHVGNTKSLARSHT-GDFLFTGGEDGAIHMYEIINDCTEANVLLVATW--IPHTGPVNSLAF  372 (520)
Q Consensus       305 ~~~~~~~~~---------~~~~~i~~l~~s~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~--~~h~~~v~~l~~  372 (520)
                      +..+..+..         ++......++++|+ +.++++...++.|++||..++      ..+..+  ..+...+.++++
T Consensus       175 g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G------~~~~~~~~~~~~~~~~~~~~  248 (329)
T 3fvz_A          175 GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK------EFVREIKHASFGRNVFAISY  248 (329)
T ss_dssp             SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC------CEEEEECCTTTTTCEEEEEE
T ss_pred             CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC------cEEEEEeccccCCCcceeee
Confidence            666666531         12334889999998 777777888999999999866      444444  345677889999


Q ss_pred             cCCEEEEEe--------CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceee--EEEEecCCEEEEecCC
Q 009993          373 EFPWLVSAA--------GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL--LSVDIGADRIVCGGEE  442 (520)
Q Consensus       373 ~~~~l~s~s--------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sg~~D  442 (520)
                      +|..++...        .+..|++||..++.....            +..    ..++....  .++++++.++++...+
T Consensus       249 ~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~------------~~~----~~~~~~~p~~ia~~~dG~lyvad~~~  312 (329)
T 3fvz_A          249 IPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV------------FKP----VRKHFDMPHDIVASEDGTVYIGDAHT  312 (329)
T ss_dssp             ETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE------------ECC----SSSCCSSEEEEEECTTSEEEEEESSS
T ss_pred             cCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE------------EcC----CCCccCCeeEEEECCCCCEEEEECCC
Confidence            886554443        245899999876422211            000    01222233  3445555588888899


Q ss_pred             CeEEEEeCCc
Q 009993          443 GIVRIWNFSQ  452 (520)
Q Consensus       443 g~v~iwd~~~  452 (520)
                      +.|++|++..
T Consensus       313 ~~I~~~~~~~  322 (329)
T 3fvz_A          313 NTVWKFTLTE  322 (329)
T ss_dssp             CCEEEEEEEE
T ss_pred             CEEEEEeCCc
Confidence            9999999864

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.45  E-value=4.9e-10  Score=113.28  Aligned_cols=247  Identities=16%  Similarity=0.153  Sum_probs=157.7

Q ss_pred             cEEEEEEccCCCEEEEEeCCCeEEEEECC--CCcEEEEeCCCC-ceEEEEe----cCCCEEEEEeC-CCcEEEEEcccCc
Q 009993          144 AVLTVFVLASAKLLFTSGYDSIVRMWHLE--DGFSIASSKPLG-CTIRAVA----ADKKLLVAGGT-DGFIHCWRAVEVL  215 (520)
Q Consensus       144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~~~-~~v~~~~----~~~~~l~sg~~-dg~i~vwd~~~~~  215 (520)
                      .+..+.|+|||+++++++.|+.|.+||+.  +++.+.++.... ..-.+++    |+|++++++.. ++.|.++|..+.+
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~  277 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE  277 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc
Confidence            56789999999999999999999999995  888887776433 3345677    59998887766 5999999987754


Q ss_pred             ceeeeccCCccccceEEeccC-CCCeEEEEE--c-CCEEEEEecCCeEEEEECCCCcEEEE--eeeccCEE--EEeeCCC
Q 009993          216 PHLFDISGSEKQNTQFRLWEH-EGPITSLAL--D-LTRIYSGSWDMTVRVWDRALLKCLKV--LRHSDWVY--GLAPHDT  287 (520)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~--~-~~~l~s~s~dg~v~iwd~~~~~~~~~--~~~~~~v~--~~~~~~~  287 (520)
                      ....-.........   ...| ...+..+..  + +..+++...+|.|.++|..+.+.+..  +.......  .+.++++
T Consensus       278 ~~~~i~~~~~~~~~---~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr  354 (567)
T 1qks_A          278 PKKIQSTRGMTYDE---QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR  354 (567)
T ss_dssp             EEEEEECCEECTTT---CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSC
T ss_pred             EEEEEecccccccc---ccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCC
Confidence            21100000000000   0001 124566665  2 34566667789999999887654332  22333333  3558999


Q ss_pred             EEEEEc--CCeEEEEECCCCeeeEEeec----ccccceEEEEecCCCCEEE-EEe-CCCeEEEEEcccCcc-ccceeeee
Q 009993          288 TVASTS--GSDVYIWDTNSGCLLTVVNG----AHVGNTKSLARSHTGDFLF-TGG-EDGAIHMYEIINDCT-EANVLLVA  358 (520)
Q Consensus       288 ~l~~~~--d~~i~iwd~~~~~~~~~~~~----~~~~~i~~l~~s~~~~~l~-tg~-~dg~i~iwd~~~~~~-~~~~~~~~  358 (520)
                      +++++.  ++.|.++|+.+++.+..+..    .|.+.-..+ ++|++..+. ++. .++.|.++|...... ....+.+.
T Consensus       355 ~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~  433 (567)
T 1qks_A          355 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILD  433 (567)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred             EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEE
Confidence            887766  68999999999988777654    243222222 678755544 443 468999999987321 11124556


Q ss_pred             eecCCcCCEEEEEecC--CEEEEEeC-------CCcEEEEeCCcc
Q 009993          359 TWIPHTGPVNSLAFEF--PWLVSAAG-------DGKLSLIDVRKL  394 (520)
Q Consensus       359 ~~~~h~~~v~~l~~~~--~~l~s~s~-------dg~i~vwd~~~~  394 (520)
                      ++......-..+..+|  ++|.+...       .++|.|+|+.+.
T Consensus       434 ~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          434 SFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             EEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             EEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence            6554433333455665  57776653       359999999875

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.44  E-value=4.1e-11  Score=110.02  Aligned_cols=229  Identities=9%  Similarity=-0.063  Sum_probs=151.8

Q ss_pred             cEEEEEEccCCCEEE-EEeCCCeEEEEECCCCcEEEEeCCC--CceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeee
Q 009993          144 AVLTVFVLASAKLLF-TSGYDSIVRMWHLEDGFSIASSKPL--GCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD  220 (520)
Q Consensus       144 ~V~~l~~~~~~~~l~-sgs~dg~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  220 (520)
                      ...+++++++|++++ +.+.++.|.+|+..++........+  ...-.++.++++++++.. ++.|.+||..+....   
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~---  100 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT---  100 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE---
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe---
Confidence            678999999999777 5477899999997665433221222  222345567888666555 889999997654211   


Q ss_pred             ccCCccccceEEec-cCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEE--eeCCCEEEEEc-
Q 009993          221 ISGSEKQNTQFRLW-EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGL--APHDTTVASTS-  293 (520)
Q Consensus       221 ~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-  293 (520)
                                 .+. .....+..+++  +++.+++...++.|.+|+..+........ ....+.++  .++++++++.. 
T Consensus       101 -----------~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  169 (270)
T 1rwi_B          101 -----------VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD  169 (270)
T ss_dssp             -----------ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG
T ss_pred             -----------eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC
Confidence                       111 22356788888  45666666678899999866554332221 22234444  47788777766 


Q ss_pred             CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEec
Q 009993          294 GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE  373 (520)
Q Consensus       294 d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  373 (520)
                      ++.|.+||........... .+...+..++++++|.++++...++.|.+|+.....      .......+...+.+++++
T Consensus       170 ~~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~------~~~~~~~~~~~p~~i~~~  242 (270)
T 1rwi_B          170 NNRVVKLEAESNNQVVLPF-TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT------STVLPFTGLNTPLAVAVD  242 (270)
T ss_dssp             GTEEEEECTTTCCEEECCC-SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC------CEECCCCSCSCEEEEEEC
T ss_pred             CCEEEEEecCCCceEeecc-cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc------ceeeccCCCCCceeEEEC
Confidence            7899999998766543322 234678899999999888877778999999986652      222222334578999997


Q ss_pred             C--CEEEEEeCCCcEEEEeCCcc
Q 009993          374 F--PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       374 ~--~~l~s~s~dg~i~vwd~~~~  394 (520)
                      +  ..+++...++.|+++++...
T Consensus       243 ~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          243 SDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             TTCCEEEEEGGGTEEEEECCCGG
T ss_pred             CCCCEEEEECCCCEEEEEcCCCc
Confidence            5  57778888999999998764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.40  E-value=3e-09  Score=98.95  Aligned_cols=231  Identities=6%  Similarity=-0.037  Sum_probs=153.4

Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEE-EeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcc
Q 009993          140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA-SSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLP  216 (520)
Q Consensus       140 ~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~-~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~  216 (520)
                      .....+.+++++++|++.++...++.|.+||.. ++... .+......+..+.  +++.+.++...++.|..+|.. +..
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence            345678899999999988887778999999987 55433 2222223444444  778777776667889999876 421


Q ss_pred             eeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEE-ee-eccCEEEEe--eCCCEEE
Q 009993          217 HLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKV-LR-HSDWVYGLA--PHDTTVA  290 (520)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~-~~~~v~~~~--~~~~~l~  290 (520)
                                  ...........+.++++  ++...++...++.|..+|.. ++.... +. ....+.++.  +++++++
T Consensus        95 ------------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v  161 (300)
T 2qc5_A           95 ------------TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWF  161 (300)
T ss_dssp             ------------EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred             ------------EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEE
Confidence                        11122223456888888  45666666667899999987 554422 22 234566665  6788776


Q ss_pred             EEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEE
Q 009993          291 STS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNS  369 (520)
Q Consensus       291 ~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~  369 (520)
                      +.. ++.|..+|. +++........+...+..+++.++|.+.++....+.|.+||. ++.     ........+...+.+
T Consensus       162 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~-----~~~~~~~~~~~~~~~  234 (300)
T 2qc5_A          162 TENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE-----ISEYDIPTPNARPHA  234 (300)
T ss_dssp             EETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC-----EEEEECSSTTCCEEE
T ss_pred             EecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc-----EEEEECCCCCCCceE
Confidence            666 688999998 555443222234457889999999988777777788999998 331     111223344567899


Q ss_pred             EEecC--CEEEEEeCCCcEEEEeCC
Q 009993          370 LAFEF--PWLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       370 l~~~~--~~l~s~s~dg~i~vwd~~  392 (520)
                      +++++  ...++...++.|..||..
T Consensus       235 i~~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          235 ITAGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             EEECSTTCEEEEETTTTEEEEECTT
T ss_pred             EEECCCCCEEEeccCCCeEEEECCC
Confidence            99975  444554456899999974

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.40  E-value=1.5e-10  Score=111.92  Aligned_cols=260  Identities=12%  Similarity=0.059  Sum_probs=164.3

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEE
Q 009993          153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR  232 (520)
Q Consensus       153 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  232 (520)
                      ++..++.++.++.|..+|..+|+.+................+..++.++.++.|..+|..++...- ......   ....
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W-~~~~~~---~~~~  177 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKW-TVNLDM---PSLS  177 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEE-EEECCC-------
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEE-EEeCCC---Ccee
Confidence            466788899999999999999998876654322111111235688889999999999998875321 110000   0000


Q ss_pred             eccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeeccC-----------E-EEEeeCCCEEEEEc-CCeEEE
Q 009993          233 LWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDW-----------V-YGLAPHDTTVASTS-GSDVYI  299 (520)
Q Consensus       233 ~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-----------v-~~~~~~~~~l~~~~-d~~i~i  299 (520)
                      ....    ......++.++.++.++.+..+|..+++.+.......+           + ......+..++.++ ++.+..
T Consensus       178 ~~~~----~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~  253 (376)
T 3q7m_A          178 LRGE----SAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTA  253 (376)
T ss_dssp             -CCC----CCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEE
T ss_pred             ecCC----CCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEE
Confidence            0011    12233567888899999999999999998877652211           0 01112345566666 899999


Q ss_pred             EECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec-CCcCCEEEEEecCCEEE
Q 009993          300 WDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI-PHTGPVNSLAFEFPWLV  378 (520)
Q Consensus       300 wd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~l~  378 (520)
                      +|.++++.+.....   .....+..  ++..++.++.++.+..+|..++      +...... .....+......+..|+
T Consensus       254 ~d~~tG~~~w~~~~---~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG------~~~w~~~~~~~~~~~~~~~~~~~l~  322 (376)
T 3q7m_A          254 LDLRSGQIMWKREL---GSVNDFIV--DGNRIYLVDQNDRVMALTIDGG------VTLWTQSDLLHRLLTSPVLYNGNLV  322 (376)
T ss_dssp             EETTTCCEEEEECC---CCEEEEEE--ETTEEEEEETTCCEEEEETTTC------CEEEEECTTTTSCCCCCEEETTEEE
T ss_pred             EECCCCcEEeeccC---CCCCCceE--ECCEEEEEcCCCeEEEEECCCC------cEEEeecccCCCcccCCEEECCEEE
Confidence            99999998877642   22334443  4678888889999999999988      3333333 12223333445678999


Q ss_pred             EEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEe
Q 009993          379 SAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWN  449 (520)
Q Consensus       379 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd  449 (520)
                      .++.+|.|.++|..++.......          .       .+.. ........+..|+.++.+|.|+.|+
T Consensus       323 v~~~~g~l~~~d~~tG~~~~~~~----------~-------~~~~-~~~~~~~~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          323 VGDSEGYLHWINVEDGRFVAQQK----------V-------DSSG-FQTEPVAADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEE----------C-------CTTC-BCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred             EEeCCCeEEEEECCCCcEEEEEe----------c-------CCCc-ceeCCEEECCEEEEEeCCCEEEEEe
Confidence            99999999999998853221100          0       0000 0001112366888899999999987

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.39  E-value=1.6e-09  Score=104.12  Aligned_cols=273  Identities=10%  Similarity=-0.025  Sum_probs=169.3

Q ss_pred             EccCCCEEEEEeC--CC---eEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEe----------CCCcEEEEEcccC
Q 009993          150 VLASAKLLFTSGY--DS---IVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGG----------TDGFIHCWRAVEV  214 (520)
Q Consensus       150 ~~~~~~~l~sgs~--dg---~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~----------~dg~i~vwd~~~~  214 (520)
                      ..|++++++....  ..   +|.++|..+++.+..+.....+-..++|+++.++++.          .++.|.+||..+.
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~  107 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF  107 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence            3467777777653  22   8999999999988888754444667889999999886          3678999998765


Q ss_pred             cceeeeccCCccccceEEec--c---CCCCeEEEEE--cCCEEEEEec--CCeEEEEECCCCcEEEE-eeeccCEEEEee
Q 009993          215 LPHLFDISGSEKQNTQFRLW--E---HEGPITSLAL--DLTRIYSGSW--DMTVRVWDRALLKCLKV-LRHSDWVYGLAP  284 (520)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~--~---h~~~v~~l~~--~~~~l~s~s~--dg~v~iwd~~~~~~~~~-~~~~~~v~~~~~  284 (520)
                      ...-           ...+.  .   +......+.+  ++++|+++..  +++|.++| .+++.+.. +.....+ .+.+
T Consensus       108 ~~~~-----------~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~-~~~~  174 (373)
T 2mad_H          108 LPIA-----------DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCY-HIHP  174 (373)
T ss_pred             cEEE-----------EEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceE-EEEe
Confidence            3210           00010  0   0122345666  7889888874  57899999 99998888 7644433 2334


Q ss_pred             CC-CEEEEEc-CCeEEEEECCCCeeeEEeec----ccccc-eEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeee
Q 009993          285 HD-TTVASTS-GSDVYIWDTNSGCLLTVVNG----AHVGN-TKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV  357 (520)
Q Consensus       285 ~~-~~l~~~~-d~~i~iwd~~~~~~~~~~~~----~~~~~-i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~  357 (520)
                      .+ +.+++.+ ||.+.++|. +++.......    ....+ .....+.+++..++..+..+.+.+.|+.....    ..+
T Consensus       175 ~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~----~v~  249 (373)
T 2mad_H          175 GAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA----TNK  249 (373)
T ss_pred             CCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc----eEe
Confidence            43 4444444 899999999 8776633220    01111 12345666666555445788999999875521    111


Q ss_pred             eeecC----------CcCCEEEEEecC--CEEEEEeC----------CCcEEEEeCCcccccCCCCCCCceeeeeecCCC
Q 009993          358 ATWIP----------HTGPVNSLAFEF--PWLVSAAG----------DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPP  415 (520)
Q Consensus       358 ~~~~~----------h~~~v~~l~~~~--~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  415 (520)
                      ..+.-          .......+.+++  +.++.+..          ++.|.++|..+......                
T Consensus       250 ~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~----------------  313 (373)
T 2mad_H          250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQ----------------  313 (373)
T ss_pred             eeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEE----------------
Confidence            11110          112233356654  55555432          35799999987532211                


Q ss_pred             cccccCcceeeEEEEecCC-EEEEec-CCCeEEEEeCCchHhHHH
Q 009993          416 QRMLHGFECNLLSVDIGAD-RIVCGG-EEGIVRIWNFSQAFEIER  458 (520)
Q Consensus       416 ~~~~~~~~~~v~~~~~~~~-~l~sg~-~Dg~v~iwd~~~~~~~~~  458 (520)
                        ..-+....-..++++++ +++++. .++.|.+||..+++.+..
T Consensus       314 --i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          314 --ISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             --EECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence              11122344567777888 777777 589999999998876544

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.35  E-value=3.8e-09  Score=98.18  Aligned_cols=231  Identities=10%  Similarity=0.025  Sum_probs=151.9

Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcE-EEEeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcccCcce
Q 009993          141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS-IASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPH  217 (520)
Q Consensus       141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~-~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~  217 (520)
                      +...+.+++++++|.++++...++.|..||.. ++. ..........+..+  .+++.++++...++.|.+||. ++...
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~  132 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR  132 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE
Confidence            34678999999999988887778899999986 332 22222233344444  477887777777889999987 44211


Q ss_pred             eeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEE-ee-eccCEEEEe--eCCCEEEE
Q 009993          218 LFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKV-LR-HSDWVYGLA--PHDTTVAS  291 (520)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~-~~~~v~~~~--~~~~~l~~  291 (520)
                                  ......+...+..+++  ++...++...++.|..||. +++.... .. ....+.++.  ++++++++
T Consensus       133 ------------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~  199 (299)
T 2z2n_A          133 ------------EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFV  199 (299)
T ss_dssp             ------------EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred             ------------EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEE
Confidence                        1122234456888888  4455665556789999998 6665443 22 234466665  66777776


Q ss_pred             Ec-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEE
Q 009993          292 TS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL  370 (520)
Q Consensus       292 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l  370 (520)
                      .. ++.|.+||. +++........+...+.+++++++|.++++...++.|..||.. +.     .....+..+...+.++
T Consensus       200 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~-----~~~~~~~~~~~~~~~i  272 (299)
T 2z2n_A          200 EIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI-----IEEYPIQIKSAEPHGI  272 (299)
T ss_dssp             ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE-----EEEEECSSSSCCEEEE
T ss_pred             ccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc-----eEEEeCCCCCCccceE
Confidence            66 789999999 6654332222345678999999999977776678899999983 31     1122233455678898


Q ss_pred             EecCCEEEEEeCCCcEEEEeCCc
Q 009993          371 AFEFPWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       371 ~~~~~~l~s~s~dg~i~vwd~~~  393 (520)
                      .+....|..+...+.|..++..+
T Consensus       273 ~~~~g~l~v~~~~~~l~~~~~~~  295 (299)
T 2z2n_A          273 CFDGETIWFAMECDKIGKLTLIK  295 (299)
T ss_dssp             EECSSCEEEEETTTEEEEEEEC-
T ss_pred             EecCCCEEEEecCCcEEEEEcCc
Confidence            88334555555567788887765

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.35  E-value=1e-10  Score=123.57  Aligned_cols=239  Identities=13%  Similarity=-0.051  Sum_probs=152.5

Q ss_pred             cccccEEEEEEccCCCEEEEEeCC-----CeEEEEECCCCcEEEEeCCCCc--eEEEEecCCCEEEEEeCCCc-------
Q 009993          140 GHTEAVLTVFVLASAKLLFTSGYD-----SIVRMWHLEDGFSIASSKPLGC--TIRAVAADKKLLVAGGTDGF-------  205 (520)
Q Consensus       140 ~h~~~V~~l~~~~~~~~l~sgs~d-----g~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~l~sg~~dg~-------  205 (520)
                      +|...+..++|||||++|+.++.+     ..|++||+.+++.+.... +..  .-.+++|| +.|+.++.++.       
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~  237 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ  237 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccc
Confidence            455578899999999999877654     469999999998765321 111  23467799 88888887654       


Q ss_pred             -------EEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCC-----eEEEEECCCC--cE
Q 009993          206 -------IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM-----TVRVWDRALL--KC  269 (520)
Q Consensus       206 -------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg-----~v~iwd~~~~--~~  269 (520)
                             |++|++.++...         ...+.....+...+..+.|  ||++|+..+.++     .|++||+.++  ++
T Consensus       238 ~~~~~~~v~~~~lgt~~~~---------~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~  308 (741)
T 1yr2_A          238 ALNYNQTVWLHRLGTPQSA---------DQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGP  308 (741)
T ss_dssp             -CCCCCEEEEEETTSCGGG---------CEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECC
T ss_pred             cCCCCCEEEEEECCCCchh---------CEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcc
Confidence                   888888665310         0111122233345778888  778888777654     8999999877  41


Q ss_pred             EEEee-ec-cCEEEEeeCCCEEEEEc-C----CeEEEEECCCC-eeeEEeecccccceEEEEecCCCCEEEEEeCCCeEE
Q 009993          270 LKVLR-HS-DWVYGLAPHDTTVASTS-G----SDVYIWDTNSG-CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIH  341 (520)
Q Consensus       270 ~~~~~-~~-~~v~~~~~~~~~l~~~~-d----~~i~iwd~~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~  341 (520)
                      ...+. +. .....+.+++..|+..+ +    +.|.+||+.++ .....+...+...+..+.++ ++.++++...|+..+
T Consensus       309 ~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~  387 (741)
T 1yr2_A          309 VTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQ  387 (741)
T ss_dssp             CEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEE
T ss_pred             cEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence            33333 33 33334458888877765 2    45999999885 23333333455566677887 566788888999888


Q ss_pred             EEEcccCccccceeeeeeecC-CcCCEEEEEecC--C-EEEEEe---CCCcEEEEeCCccc
Q 009993          342 MYEIINDCTEANVLLVATWIP-HTGPVNSLAFEF--P-WLVSAA---GDGKLSLIDVRKLL  395 (520)
Q Consensus       342 iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~--~-~l~s~s---~dg~i~vwd~~~~~  395 (520)
                      ||.+....     .....+.. +.+.+..+.+++  + .+++.+   ..++|++||+.++.
T Consensus       388 l~~~~~~g-----~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          388 VLAFDLDG-----KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEETTS-----CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEeCCC-----CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            88665211     22333433 356788888865  3 333333   34789999997653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.33  E-value=1.7e-10  Score=109.94  Aligned_cols=180  Identities=12%  Similarity=0.031  Sum_probs=126.0

Q ss_pred             CCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEE
Q 009993          183 LGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVW  262 (520)
Q Consensus       183 ~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iw  262 (520)
                      ......++++...++++|+.++ +.+|++.+...........  ..... ...+.. |+.++|++++|+++ .++.|++|
T Consensus        38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~--~~~~~-~~~lp~-V~~l~fd~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTP--LTFKW-EKEIPD-VIFVCFHGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCC--CCCSE-EEECTT-EEEEEEETTEEEEE-ESSEEEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcccccc--ccceE-EeeCCC-eeEEEECCCEEEEE-cCCcEEEE
Confidence            3456678889999999999885 5569876543111000000  11112 223566 99999988999998 88999999


Q ss_pred             ECCCCcEEEEee-eccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeE
Q 009993          263 DRALLKCLKVLR-HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI  340 (520)
Q Consensus       263 d~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i  340 (520)
                      |+.+........ +...+.++.+....++++. ||.|.+||+.++....     +...|++++|+|+|  ++.|..||++
T Consensus       112 dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG--~~vg~~dg~i  184 (388)
T 1xip_A          112 DLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQ--LAVLLKDRSF  184 (388)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSSE--EEEEETTSCE
T ss_pred             EchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCCc--eEEEEcCCcE
Confidence            998776554443 6677888775443466655 9999999999887643     45689999999999  6789999999


Q ss_pred             EEEEcccCccccceeeeeee------c---CCcCCEEEEEecC--CEEEE
Q 009993          341 HMYEIINDCTEANVLLVATW------I---PHTGPVNSLAFEF--PWLVS  379 (520)
Q Consensus       341 ~iwd~~~~~~~~~~~~~~~~------~---~h~~~v~~l~~~~--~~l~s  379 (520)
                      ++|+.......    ...++      .   +|...|.+|.|.+  .++++
T Consensus       185 ~~~~~~~~~~~----~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          185 QSFAWRNGEME----KQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEEEETTEEE----EEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEEcCCCcccc----ccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            99988776310    02223      2   4778999999965  35554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.33  E-value=1.9e-09  Score=101.15  Aligned_cols=236  Identities=6%  Similarity=-0.019  Sum_probs=148.2

Q ss_pred             ccccEEEEEEccCCCEEEE-------EeCCCeEEEEECCCCcEEEEeC----CCCceEEEEe--cCCCEEEEEeCCCcEE
Q 009993          141 HTEAVLTVFVLASAKLLFT-------SGYDSIVRMWHLEDGFSIASSK----PLGCTIRAVA--ADKKLLVAGGTDGFIH  207 (520)
Q Consensus       141 h~~~V~~l~~~~~~~~l~s-------gs~dg~v~vwd~~~~~~~~~~~----~~~~~v~~~~--~~~~~l~sg~~dg~i~  207 (520)
                      .-....+++|++++.++++       +..++.|.+||..+++......    ++...+..+.  +++..++.++..+.|.
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~   95 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL   95 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred             cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEE
Confidence            3345678999999988888       6778999999988877543222    1333444544  6623444555455788


Q ss_pred             EEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecC---------------CeEEEEECCCCcEE
Q 009993          208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD---------------MTVRVWDRALLKCL  270 (520)
Q Consensus       208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d---------------g~v~iwd~~~~~~~  270 (520)
                      +||.. +....+. ....       .......+.++++  +++..++...+               +.|..||.. ++..
T Consensus        96 ~~d~~-g~~~~~~-~~~~-------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~  165 (314)
T 1pjx_A           96 VVQTD-GTFEEIA-KKDS-------EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI  165 (314)
T ss_dssp             EEETT-SCEEECC-SBCT-------TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE
T ss_pred             EEeCC-CCEEEEE-eccC-------CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE
Confidence            99976 4321110 0000       0012245778888  55666665554               567778776 5554


Q ss_pred             EEeeeccCEE--EEe----eCCCEEEEE-c-CCeEEEEECC-CCee-----eEEeecccc-cceEEEEecCCCCEEEEEe
Q 009993          271 KVLRHSDWVY--GLA----PHDTTVAST-S-GSDVYIWDTN-SGCL-----LTVVNGAHV-GNTKSLARSHTGDFLFTGG  335 (520)
Q Consensus       271 ~~~~~~~~v~--~~~----~~~~~l~~~-~-d~~i~iwd~~-~~~~-----~~~~~~~~~-~~i~~l~~s~~~~~l~tg~  335 (520)
                      ..........  .+.    ++++.++++ . ++.|.+||+. ++..     ...+. .+. ..+..++++++|.++++..
T Consensus       166 ~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~~  244 (314)
T 1pjx_A          166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP-GTHEGGADGMDFDEDNNLLVANW  244 (314)
T ss_dssp             EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC-CCSSCEEEEEEEBTTCCEEEEEE
T ss_pred             EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC-CCCCCCCCceEECCCCCEEEEEc
Confidence            4433323333  344    566555554 4 6899999986 4432     22222 232 5678899999999888888


Q ss_pred             CCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEE-EEeCCCcEEEEeCCc
Q 009993          336 EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLV-SAAGDGKLSLIDVRK  393 (520)
Q Consensus       336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~-s~s~dg~i~vwd~~~  393 (520)
                      .++.|.+||..++      ..+..+..+...+.++++++  +.|+ +...++.|..|++..
T Consensus       245 ~~~~i~~~d~~~g------~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          245 GSSHIEVFGPDGG------QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TTTEEEEECTTCB------SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCEEEEEcCCCC------cEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            8899999998765      33444455667899999965  4454 445668899999875

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.32  E-value=6.2e-10  Score=117.11  Aligned_cols=264  Identities=10%  Similarity=0.005  Sum_probs=157.0

Q ss_pred             cCCCEEEEEeCCC-----eEEEEECCCCcEEEEe------CCCCceE--EEEecCCCEEEEEeCCC-----cEEEEEccc
Q 009993          152 ASAKLLFTSGYDS-----IVRMWHLEDGFSIASS------KPLGCTI--RAVAADKKLLVAGGTDG-----FIHCWRAVE  213 (520)
Q Consensus       152 ~~~~~l~sgs~dg-----~v~vwd~~~~~~~~~~------~~~~~~v--~~~~~~~~~l~sg~~dg-----~i~vwd~~~  213 (520)
                      |+|++++....++     .+.+.+...+.....+      .++...+  .+++|||++|+.++.++     .|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            7888777554322     3334444344332211      1233333  35679999998776543     899999988


Q ss_pred             CcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCe----------------EEEEECCCCcEE--EEe
Q 009993          214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMT----------------VRVWDRALLKCL--KVL  273 (520)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~----------------v~iwd~~~~~~~--~~~  273 (520)
                      +...            ...+.  ...+..++|  |++.|+.++.++.                |++|++.+++..  ..+
T Consensus       161 g~~~------------~~~~~--~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~  226 (710)
T 2xdw_A          161 AKEL------------PDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCA  226 (710)
T ss_dssp             TEEE------------EEEEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEE
T ss_pred             CCCC------------ccccc--CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEe
Confidence            7421            11111  122567888  7889998888766                999999887622  222


Q ss_pred             e---eccCEEEE--eeCCCEEEEEc------CCeEEEEECCC------Ce-eeEEeecccccceEEEEecCCCCEEEEEe
Q 009993          274 R---HSDWVYGL--APHDTTVASTS------GSDVYIWDTNS------GC-LLTVVNGAHVGNTKSLARSHTGDFLFTGG  335 (520)
Q Consensus       274 ~---~~~~v~~~--~~~~~~l~~~~------d~~i~iwd~~~------~~-~~~~~~~~~~~~i~~l~~s~~~~~l~tg~  335 (520)
                      .   +...+..+  ++++++|+.++      +..|++||+.+      +. ....+. .+...+.. .|+|+|+.|+..+
T Consensus       227 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~-~~~~~~~~-~~s~dg~~l~~~s  304 (710)
T 2xdw_A          227 EFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI-DNFEGEYD-YVTNEGTVFTFKT  304 (710)
T ss_dssp             CCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE-CSSSSCEE-EEEEETTEEEEEE
T ss_pred             ccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee-CCCCcEEE-EEeccCCEEEEEE
Confidence            2   34445444  49999887765      35799999986      43 344454 34444544 4888998877665


Q ss_pred             CC----CeEEEEEcccCccccceeeeeeecCCcC--CEEEEEec-C-CEEEEEeCCCc--EEEEeCCcccccCCCCCCCc
Q 009993          336 ED----GAIHMYEIINDCTEANVLLVATWIPHTG--PVNSLAFE-F-PWLVSAAGDGK--LSLIDVRKLLRSGRPTSGKR  405 (520)
Q Consensus       336 ~d----g~i~iwd~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~-~-~~l~s~s~dg~--i~vwd~~~~~~~~~~~~~~~  405 (520)
                      .+    +.|.+||+.++..    .....+..|..  .+..+.|. . .++++...|+.  |.+||+.++.          
T Consensus       305 ~~~~~~~~l~~~d~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~----------  370 (710)
T 2xdw_A          305 NRHSPNYRLINIDFTDPEE----SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA----------  370 (710)
T ss_dssp             CTTCTTCEEEEEETTSCCG----GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC----------
T ss_pred             CCCCCCCEEEEEeCCCCCc----ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC----------
Confidence            53    3699999877621    11233444543  67788886 4 46677777875  5566664421          


Q ss_pred             eeeeeecCCCcccccCcceeeEEEEe--cCCEEE-E---ecCCCeEEEEeCCchH
Q 009993          406 VSRVIEVEPPQRMLHGFECNLLSVDI--GADRIV-C---GGEEGIVRIWNFSQAF  454 (520)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~-s---g~~Dg~v~iwd~~~~~  454 (520)
                               ....+..+...+..+++  +++.++ +   ....++|++||+.++.
T Consensus       371 ---------~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          371 ---------LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             ---------EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ---------EEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence                     11112223344555554  444443 3   2346899999998765

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.32  E-value=4.5e-10  Score=102.96  Aligned_cols=228  Identities=11%  Similarity=0.002  Sum_probs=143.6

Q ss_pred             EEEecCCCEEE-EEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEEC
Q 009993          188 RAVAADKKLLV-AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDR  264 (520)
Q Consensus       188 ~~~~~~~~~l~-sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~  264 (520)
                      .++.+++++++ +...++.|.+||..+.....             ....+...+.++++  +++.+++.. ++.|.+||.
T Consensus        29 i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~   94 (270)
T 1rwi_B           29 VAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-------------LPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAA   94 (270)
T ss_dssp             EEECTTCCEEEEECSSSCEEEEECC-----EE-------------CCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECT
T ss_pred             eEECCCCCEEEEccCCCCcEEEecCCCcccce-------------EeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeC
Confidence            35558888666 44678899999865442111             01123345677888  445444444 889999998


Q ss_pred             CCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeE
Q 009993          265 ALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI  340 (520)
Q Consensus       265 ~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i  340 (520)
                      .+........ ....+.++.  ++++++++.. ++.|.+||..+........ .....+..++++++|+++++...++.|
T Consensus        95 ~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~i  173 (270)
T 1rwi_B           95 GSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-TGLNDPDGVAVDNSGNVYVTDTDNNRV  173 (270)
T ss_dssp             TCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC-CSCCSCCCEEECTTCCEEEEEGGGTEE
T ss_pred             CCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc-ccCCCceeEEEeCCCCEEEEECCCCEE
Confidence            7654432211 224566665  6788777766 7899999876554332221 233467889999999987777778899


Q ss_pred             EEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCccc
Q 009993          341 HMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRM  418 (520)
Q Consensus       341 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (520)
                      .+||.....      .......+...+.++++++  ..+++...++.|.+||........                   .
T Consensus       174 ~~~~~~~~~------~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-------------------~  228 (270)
T 1rwi_B          174 VKLEAESNN------QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-------------------L  228 (270)
T ss_dssp             EEECTTTCC------EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-------------------C
T ss_pred             EEEecCCCc------eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-------------------e
Confidence            999987662      2222223336788999976  455555568899999986531110                   0


Q ss_pred             ccCc--ceeeEEEEecCCEEEEecCCCeEEEEeCCchHh
Q 009993          419 LHGF--ECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE  455 (520)
Q Consensus       419 ~~~~--~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~  455 (520)
                      ...+  .....+++++++++++...++.|++++....+.
T Consensus       229 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          229 PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             CCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             ccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            1111  122344455667888888999999999987643

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.32  E-value=1.1e-10  Score=122.43  Aligned_cols=266  Identities=11%  Similarity=-0.035  Sum_probs=155.1

Q ss_pred             ccCCCEEEEEeCCC---eEEEE--ECCCCcEEEEe------CCCCceEE--EEecCCCEEE-----EEeCCCcEEEEEcc
Q 009993          151 LASAKLLFTSGYDS---IVRMW--HLEDGFSIASS------KPLGCTIR--AVAADKKLLV-----AGGTDGFIHCWRAV  212 (520)
Q Consensus       151 ~~~~~~l~sgs~dg---~v~vw--d~~~~~~~~~~------~~~~~~v~--~~~~~~~~l~-----sg~~dg~i~vwd~~  212 (520)
                      +|+|++++....++   .-.+|  +...+.....+      .+|...+.  +++|||++|+     .|+.+..|++||+.
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            47888887766543   34444  44444332222      13443444  5669999998     44445789999998


Q ss_pred             cCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCe-------------EEEEECCCCcE--EEEee-
Q 009993          213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMT-------------VRVWDRALLKC--LKVLR-  274 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~-------------v~iwd~~~~~~--~~~~~-  274 (520)
                      ++....           ...+...  ....++|  |++.|+.++.|..             |++|++.++..  ...+. 
T Consensus       156 tg~~~~-----------~~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~  222 (695)
T 2bkl_A          156 SGEWSK-----------VDVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER  222 (695)
T ss_dssp             TCCBCS-----------SCCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC
T ss_pred             CCCCcC-----------CcccCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec
Confidence            874210           0011111  1156778  7789999988776             99999988762  22222 


Q ss_pred             --eccCEEEEe--eCCCEEEEEc-CC----eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEe---CCCeEEE
Q 009993          275 --HSDWVYGLA--PHDTTVASTS-GS----DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG---EDGAIHM  342 (520)
Q Consensus       275 --~~~~v~~~~--~~~~~l~~~~-d~----~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~---~dg~i~i  342 (520)
                        +...+.++.  ++|++++.++ ++    .|+++|..++.... +. .+...+....+ ++|++++.+.   .++.|.+
T Consensus       223 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~-~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~  299 (695)
T 2bkl_A          223 TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL-LV-KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFE  299 (695)
T ss_dssp             CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE-EE-ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEE
T ss_pred             CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE-ee-cCCCceEEEEe-cCCcEEEEECCCCCCCEEEE
Confidence              334565554  8998887766 55    67888776664433 33 24445555556 5666444444   2578999


Q ss_pred             EEcccCccccceeeeeeecCC--cCCEEEEEecC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc
Q 009993          343 YEIINDCTEANVLLVATWIPH--TGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML  419 (520)
Q Consensus       343 wd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (520)
                      ||+.++...    ....+..+  ...+..++++. .++++...|+..+||.+...        +...          ..+
T Consensus       300 ~d~~~~~~~----~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~--------g~~~----------~~l  357 (695)
T 2bkl_A          300 VDPAKPARA----SWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLK--------GKPV----------RTV  357 (695)
T ss_dssp             EBTTBCSGG----GCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETT--------CCEE----------EEC
T ss_pred             EeCCCCCcc----CCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCC--------CCee----------EEe
Confidence            998776310    11223333  44577788865 57777888999888876521        0000          001


Q ss_pred             cCc-ceeeEEE--EecCCEEE----EecCCCeEEEEeCCchH
Q 009993          420 HGF-ECNLLSV--DIGADRIV----CGGEEGIVRIWNFSQAF  454 (520)
Q Consensus       420 ~~~-~~~v~~~--~~~~~~l~----sg~~Dg~v~iwd~~~~~  454 (520)
                      ..+ ...+..+  +++++.++    +....++|++||+.++.
T Consensus       358 ~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          358 QLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             CCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            111 2223333  34455444    33456789999998764

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.32  E-value=3.2e-10  Score=107.61  Aligned_cols=272  Identities=13%  Similarity=0.083  Sum_probs=169.3

Q ss_pred             EEccCCCEEEEEeC-----CCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEe----------CCCcEEEEEccc
Q 009993          149 FVLASAKLLFTSGY-----DSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGG----------TDGFIHCWRAVE  213 (520)
Q Consensus       149 ~~~~~~~~l~sgs~-----dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~----------~dg~i~vwd~~~  213 (520)
                      ...|+++.++....     ++.|.+.|..+++.+.++.....+-..++|++++++++.          .++.|.+||..+
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t  118 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT  118 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence            34688988888765     689999999999999888643333378889999888775          367899999987


Q ss_pred             CcceeeeccCCccccceEEe--cc-----CCCCeEEEEE--cCCEEEEEec--CCeEEEEECCCCcEEEEeeeccCEEEE
Q 009993          214 VLPHLFDISGSEKQNTQFRL--WE-----HEGPITSLAL--DLTRIYSGSW--DMTVRVWDRALLKCLKVLRHSDWVYGL  282 (520)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~--~~-----h~~~v~~l~~--~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~v~~~  282 (520)
                      ...             ...+  ..     .......+.+  |+++++++..  ++.|.++|+.+++.+.++...+. ..+
T Consensus       119 ~~v-------------~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-~~~  184 (386)
T 3sjl_D          119 LLP-------------TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-YHI  184 (386)
T ss_dssp             CCE-------------EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEE
T ss_pred             CeE-------------EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-cee
Confidence            642             1221  11     0112334566  8888888764  68999999999999998874432 233


Q ss_pred             ee-CCCEEEEEc-CCeEEEEECCC-CeeeEEeeccc----ccceE-EEEec-CCCCEEEEEeCCCeEEEEEcccCccccc
Q 009993          283 AP-HDTTVASTS-GSDVYIWDTNS-GCLLTVVNGAH----VGNTK-SLARS-HTGDFLFTGGEDGAIHMYEIINDCTEAN  353 (520)
Q Consensus       283 ~~-~~~~l~~~~-d~~i~iwd~~~-~~~~~~~~~~~----~~~i~-~l~~s-~~~~~l~tg~~dg~i~iwd~~~~~~~~~  353 (520)
                      .| ..+.+++.+ ||.+.+.++.+ ++...... .+    ..++. ...|. ++|++++ .+.+|.|++.|+.+...   
T Consensus       185 ~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~-~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~---  259 (386)
T 3sjl_D          185 FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT-EVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA---  259 (386)
T ss_dssp             EEEETTEEEEEETTSCEEEEECCSSSCCEEEEC-CCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC---
T ss_pred             ecCCCceeEEECCCCCEEEEECCCCCeEEEeec-ceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcc---
Confidence            33 344554544 89999999876 55432211 11    11221 23553 5675555 55689999999976632   


Q ss_pred             eeeeeeec---------C-CcCCEEEEEecC--CEEEEEeC----------CCcEEEEeCCcccccCCCCCCCceeeeee
Q 009993          354 VLLVATWI---------P-HTGPVNSLAFEF--PWLVSAAG----------DGKLSLIDVRKLLRSGRPTSGKRVSRVIE  411 (520)
Q Consensus       354 ~~~~~~~~---------~-h~~~v~~l~~~~--~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  411 (520)
                       .....+.         + ..+....+++++  +.++....          .+.|.+.|+.+.....             
T Consensus       260 -~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~-------------  325 (386)
T 3sjl_D          260 -KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA-------------  325 (386)
T ss_dssp             -EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE-------------
T ss_pred             -eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEE-------------
Confidence             1111111         0 111222355554  55555432          2579999998852221             


Q ss_pred             cCCCcccccCcceeeEEEEecCC-EEEE-ecCCCeEEEEeCCchHhHHH
Q 009993          412 VEPPQRMLHGFECNLLSVDIGAD-RIVC-GGEEGIVRIWNFSQAFEIER  458 (520)
Q Consensus       412 ~~~~~~~~~~~~~~v~~~~~~~~-~l~s-g~~Dg~v~iwd~~~~~~~~~  458 (520)
                           +..-++...-..++++++ +|++ ...++.|.++|..+++.+++
T Consensus       326 -----~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~  369 (386)
T 3sjl_D          326 -----KFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS  369 (386)
T ss_dssp             -----EEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             -----EEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence                 112233344567777776 5555 56699999999998765543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.30  E-value=5.6e-11  Score=109.27  Aligned_cols=218  Identities=10%  Similarity=-0.059  Sum_probs=144.9

Q ss_pred             CCEEEEEecCCeEEEEECCCCcEEEEeeec--cCEEEEe--eCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEE
Q 009993          247 LTRIYSGSWDMTVRVWDRALLKCLKVLRHS--DWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSL  322 (520)
Q Consensus       247 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~--~~v~~~~--~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l  322 (520)
                      ++.|++++.|+.|.+||.++++.+..+...  ..+.++.  +++++++ +.++.|+.||. +++.+..+..+....+.++
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~   82 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQTA   82 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCcccccc
Confidence            467899999999999999999999988733  2444444  8999888 45788999999 8999998875434578899


Q ss_pred             EecCCCCEEEEEeC-CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe--cCCEEEEEeCCCcEEEEeCCcccccCC
Q 009993          323 ARSHTGDFLFTGGE-DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGR  399 (520)
Q Consensus       323 ~~s~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~  399 (520)
                      .+.|+|+++++.+. ++.|..+|. +++.......-.....+......+++  +++++++...++.|..||.. +.....
T Consensus        83 ~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~  160 (276)
T 3no2_A           83 RILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNS  160 (276)
T ss_dssp             EECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred             EECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEE
Confidence            99999999999887 777877775 44211111100000122223334444  45899999999999999987 432211


Q ss_pred             CCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhh-cccccchhhhhccce
Q 009993          400 PTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARAL-RGIRLENRMRRRKLQ  478 (520)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  478 (520)
                      ...            .     +. .......++++.+++++.+++|..+|..+++.+.+..... .+.+     ...+..
T Consensus       161 ~~~------------~-----~~-~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~-----l~~~~~  217 (276)
T 3no2_A          161 VKL------------S-----GT-PFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQ-----LFFVAQ  217 (276)
T ss_dssp             EEC------------S-----SC-CCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCC-----CSEEEE
T ss_pred             EEC------------C-----CC-ccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcc-----cccccc
Confidence            100            0     01 1112344667788888888899999999887765543211 1110     122456


Q ss_pred             eeeccCCCccccc
Q 009993          479 TEMSSKGGRTDQC  491 (520)
Q Consensus       479 ~~~s~~g~~~~~~  491 (520)
                      +...++|..+++.
T Consensus       218 ~~~~~~G~i~v~~  230 (276)
T 3no2_A          218 LFPLQNGGLYICN  230 (276)
T ss_dssp             EEECTTSCEEEEE
T ss_pred             ceEcCCCCEEEEe
Confidence            7778888777665

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.29  E-value=1.8e-09  Score=100.44  Aligned_cols=185  Identities=13%  Similarity=0.057  Sum_probs=124.0

Q ss_pred             EEEEecCCC-EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEE
Q 009993          187 IRAVAADKK-LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWD  263 (520)
Q Consensus       187 v~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd  263 (520)
                      -.+++++++ +++++..++.|..||..++               ...+..+...+.++++  +++.+++...++.|.+||
T Consensus        32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~---------------~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d   96 (296)
T 3e5z_A           32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQ---------------LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR   96 (296)
T ss_dssp             EEEEEGGGTEEEEEEGGGTEEEEEETTSC---------------EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred             CCeEeCCCCEEEEEeCCCCEEEEEECCCC---------------eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence            346678888 7888888999999997654               2233346677899999  566666666678999999


Q ss_pred             CCCCcEEEEeee-----ccCEEE--EeeCCCEEEEE----c--------------CCeEEEEECCCCeeeEEeecccccc
Q 009993          264 RALLKCLKVLRH-----SDWVYG--LAPHDTTVAST----S--------------GSDVYIWDTNSGCLLTVVNGAHVGN  318 (520)
Q Consensus       264 ~~~~~~~~~~~~-----~~~v~~--~~~~~~~l~~~----~--------------d~~i~iwd~~~~~~~~~~~~~~~~~  318 (520)
                      ..+++.......     ...+..  +.++|+++++.    .              .+.|..+|.. ++.. .+. .+...
T Consensus        97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~-~~~~~  173 (296)
T 3e5z_A           97 EPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-API-RDRVK  173 (296)
T ss_dssp             STTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEE-CCCSS
T ss_pred             CCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-Eee-cCCCC
Confidence            988876544321     122333  44888888863    2              2467777766 4433 333 35667


Q ss_pred             eEEEEecCCCCEEEEEeCCCeEEEEEcc-cCccccceeeeeeecCCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCc
Q 009993          319 TKSLARSHTGDFLFTGGEDGAIHMYEII-NDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       319 i~~l~~s~~~~~l~tg~~dg~i~iwd~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~  393 (520)
                      ...++|+|+++.+++.+.++.|.+|++. ++.....   ...+..+...+.++++++ ..|..+. ++.|.+||...
T Consensus       174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~---~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~g  246 (296)
T 3e5z_A          174 PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQ---GVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPDG  246 (296)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEE---EEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTTS
T ss_pred             CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCC---CeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCCC
Confidence            7899999999988778888999999997 3311000   112233556677889975 2344444 88999999863

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.26  E-value=5.8e-09  Score=101.60  Aligned_cols=229  Identities=14%  Similarity=0.114  Sum_probs=151.6

Q ss_pred             ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCC--cEEEEEcccCcceeee
Q 009993          143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDG--FIHCWRAVEVLPHLFD  220 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg--~i~vwd~~~~~~~~~~  220 (520)
                      .....|+|+++++++++...++.|++||..++..............++.++++.|+++..++  .|.+++..++...   
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~---  207 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP---  207 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCBCEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE---
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCceeEecCCCcEEEEecCCCceEEEEEcCCCcee---
Confidence            46789999999998888888899999999887665444332222267889999999988876  7888887654210   


Q ss_pred             ccCCccccceEEe-ccCCCCeEEEEEc--CCEEEEEecCCeEEEEECCCCcEEEE----ee-ec--cC--EEEEeeC-CC
Q 009993          221 ISGSEKQNTQFRL-WEHEGPITSLALD--LTRIYSGSWDMTVRVWDRALLKCLKV----LR-HS--DW--VYGLAPH-DT  287 (520)
Q Consensus       221 ~~~~~~~~~~~~~-~~h~~~v~~l~~~--~~~l~s~s~dg~v~iwd~~~~~~~~~----~~-~~--~~--v~~~~~~-~~  287 (520)
                             .....+ ......+.+++++  +..|+.+..++.|+.||..++.....    .. ..  .+  =..+.++ +.
T Consensus       208 -------~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~  280 (409)
T 3hrp_A          208 -------TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN  280 (409)
T ss_dssp             -------EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE
T ss_pred             -------EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE
Confidence                   000011 1144566778884  46777777789999999987764332    11 11  11  2344564 45


Q ss_pred             EEEEEc-CCeEEEEECCCCeeeEEeeccc---------------ccceEEEEecCCCCEEEEEe-CCCeEEEEEcccCcc
Q 009993          288 TVASTS-GSDVYIWDTNSGCLLTVVNGAH---------------VGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDCT  350 (520)
Q Consensus       288 ~l~~~~-d~~i~iwd~~~~~~~~~~~~~~---------------~~~i~~l~~s~~~~~l~tg~-~dg~i~iwd~~~~~~  350 (520)
                      ++++.. ++.|+.||....  +..+. ++               -.....++++|+|.++++-. .++.|+.|++.++. 
T Consensus       281 lyv~d~~~~~I~~~~~~g~--~~~~~-g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~-  356 (409)
T 3hrp_A          281 FYMSDQNLSSVYKITPDGE--CEWFC-GSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY-  356 (409)
T ss_dssp             EEEEETTTTEEEEECTTCC--EEEEE-ECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE-
T ss_pred             EEEEeCCCCEEEEEecCCC--EEEEE-eCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE-
Confidence            555555 788999997654  22222 12               23478999999999888877 88999999976662 


Q ss_pred             ccceeeeeeecCC---------------cCCEEEEEecC--CEEEEEeCCCcEEEEeC
Q 009993          351 EANVLLVATWIPH---------------TGPVNSLAFEF--PWLVSAAGDGKLSLIDV  391 (520)
Q Consensus       351 ~~~~~~~~~~~~h---------------~~~v~~l~~~~--~~l~s~s~dg~i~vwd~  391 (520)
                            +.++.++               -.....+++++  .++++-..++.|+.+++
T Consensus       357 ------v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          357 ------VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             ------EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             ------EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence                  2222222               24578899976  35555566778887764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.25  E-value=1e-09  Score=113.89  Aligned_cols=189  Identities=14%  Similarity=0.028  Sum_probs=125.2

Q ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCc-----------eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeecc
Q 009993          154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC-----------TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS  222 (520)
Q Consensus       154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~-----------~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  222 (520)
                      +..|+.++.++.|.-+|..+|+.+.++.....           ....+...+..+++++.|+.|..+|..+|+.. +...
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~-W~~~  155 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEV-WHQN  155 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEE-EEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEE-eeec
Confidence            56677788889999999999999988764321           01122335778999999999999999988532 1111


Q ss_pred             CCccccceEEeccCCCCeE-EEEEcCCEEEEEec------CCeEEEEECCCCcEEEEeeecc------------------
Q 009993          223 GSEKQNTQFRLWEHEGPIT-SLALDLTRIYSGSW------DMTVRVWDRALLKCLKVLRHSD------------------  277 (520)
Q Consensus       223 ~~~~~~~~~~~~~h~~~v~-~l~~~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~~------------------  277 (520)
                      .....       .....+. .....++.++.++.      ++.|+.+|..+++.+..+....                  
T Consensus       156 ~~~~~-------~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~  228 (677)
T 1kb0_A          156 TFEGQ-------KGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAART  228 (677)
T ss_dssp             TTTTC-------CSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred             CCcCc-------CcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccc
Confidence            10000       0001111 11234566666654      7999999999999988775211                  


Q ss_pred             -----------------CEEEEeeCCCEEEEEc-CC-------------------eEEEEECCCCeeeEEeecccc----
Q 009993          278 -----------------WVYGLAPHDTTVASTS-GS-------------------DVYIWDTNSGCLLTVVNGAHV----  316 (520)
Q Consensus       278 -----------------~v~~~~~~~~~l~~~~-d~-------------------~i~iwd~~~~~~~~~~~~~~~----  316 (520)
                                       ...++.+++..++.+. ++                   .|..+|.++|+.+..+...+.    
T Consensus       229 w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd  308 (677)
T 1kb0_A          229 WDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWD  308 (677)
T ss_dssp             SCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred             ccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccc
Confidence                             1124456778888776 43                   499999999999888764322    


Q ss_pred             ----cceEEEEecCCC---CEEEEEeCCCeEEEEEcccCcc
Q 009993          317 ----GNTKSLARSHTG---DFLFTGGEDGAIHMYEIINDCT  350 (520)
Q Consensus       317 ----~~i~~l~~s~~~---~~l~tg~~dg~i~iwd~~~~~~  350 (520)
                          .....+....+|   ..++.++.+|.++++|..+++.
T Consensus       309 ~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~  349 (677)
T 1kb0_A          309 YTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF  349 (677)
T ss_dssp             CCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             cccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence                122233344467   6889999999999999999853

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.24  E-value=2.8e-08  Score=95.34  Aligned_cols=228  Identities=9%  Similarity=-0.077  Sum_probs=149.0

Q ss_pred             EEEEccCCCEEEEEe----------CCCeEEEEECCCCcEEEEeCCC---------CceEEEEecCCCEEEEEeC--CCc
Q 009993          147 TVFVLASAKLLFTSG----------YDSIVRMWHLEDGFSIASSKPL---------GCTIRAVAADKKLLVAGGT--DGF  205 (520)
Q Consensus       147 ~l~~~~~~~~l~sgs----------~dg~v~vwd~~~~~~~~~~~~~---------~~~v~~~~~~~~~l~sg~~--dg~  205 (520)
                      .++++|||++++.+.          .++.|.+||..+.+.+..+...         ...-..++|+|++|+++..  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            889999999999886          3678999999998887766421         2234568899999998874  478


Q ss_pred             EEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee------eccCE
Q 009993          206 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR------HSDWV  279 (520)
Q Consensus       206 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~------~~~~v  279 (520)
                      |.++| .++..             ...+....+.+.-....+..+++.+.||.+.++|. +++......      ...++
T Consensus       150 v~viD-~t~~~-------------~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~  214 (373)
T 2mad_H          150 VGLVV-QGGSS-------------DDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNL  214 (373)
T ss_pred             EEEEE-CCCCE-------------EeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcce
Confidence            99999 77631             12201111222111123456777888999999999 887664322      11111


Q ss_pred             E---EEeeC-CCEEEEEcCCeEEEEECCCCe--eeEEeec--c-------cccceEEEEecCCCCEEEEEeC--------
Q 009993          280 Y---GLAPH-DTTVASTSGSDVYIWDTNSGC--LLTVVNG--A-------HVGNTKSLARSHTGDFLFTGGE--------  336 (520)
Q Consensus       280 ~---~~~~~-~~~l~~~~d~~i~iwd~~~~~--~~~~~~~--~-------~~~~i~~l~~s~~~~~l~tg~~--------  336 (520)
                      .   .+.++ +.+++...++.+.+.|+..+.  .+..+..  .       .......+.++|+++.++++..        
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~  294 (373)
T 2mad_H          215 LTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLH  294 (373)
T ss_pred             eecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCccccc
Confidence            1   12333 344444457899999997653  2222210  0       1223445789999998887653        


Q ss_pred             --CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--C-EEEEEe-CCCcEEEEeCCcccc
Q 009993          337 --DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P-WLVSAA-GDGKLSLIDVRKLLR  396 (520)
Q Consensus       337 --dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~s-~dg~i~vwd~~~~~~  396 (520)
                        ++.|.++|..+.      +.+.++.. .....++.|++  + .++++. .++.|.++|+.+...
T Consensus       295 ~~~~~V~VID~~t~------~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v  353 (373)
T 2mad_H          295 AAAKEVTSVTGLVG------QTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             CCCCeEEEEECCCC------EEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence              357999999988      55555532 23578899976  4 677777 589999999998643

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.24  E-value=1.2e-09  Score=113.76  Aligned_cols=189  Identities=14%  Similarity=0.089  Sum_probs=122.5

Q ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCce-----------EEEEecCCCEEEEEeCCCcEEEEEcccCcceeeecc
Q 009993          154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT-----------IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS  222 (520)
Q Consensus       154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  222 (520)
                      +..|+.++.++.|..+|..+|+.+..+......           .......+..+++++.|+.|..+|..+|+.. +...
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~-W~~~  148 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRA-WSVD  148 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEE-EEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEe-eeec
Confidence            667888888999999999999999887543210           0112235678899999999999999988632 1111


Q ss_pred             CC-ccccceEEeccCCCCeEEEEEcCCEEEEEe------cCCeEEEEECCCCcEEEEeeec--c----------------
Q 009993          223 GS-EKQNTQFRLWEHEGPITSLALDLTRIYSGS------WDMTVRVWDRALLKCLKVLRHS--D----------------  277 (520)
Q Consensus       223 ~~-~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~~--~----------------  277 (520)
                      .. ... .  .......+    .+.++.++.++      .+|.|..||.++++.+..+...  .                
T Consensus       149 ~~~~~~-~--~~~~~~sP----~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~  221 (689)
T 1yiq_A          149 TRADHK-R--SYTITGAP----RVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKT  221 (689)
T ss_dssp             CCSCTT-S--CCBCCSCC----EEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTT
T ss_pred             CcCCCC-C--CccccCCc----EEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccc
Confidence            10 000 0  00001111    12345555554      3789999999999988776510  0                


Q ss_pred             ----------------CEEEEeeCCCEEEEEc-CC-------------------eEEEEECCCCeeeEEeecc-cc----
Q 009993          278 ----------------WVYGLAPHDTTVASTS-GS-------------------DVYIWDTNSGCLLTVVNGA-HV----  316 (520)
Q Consensus       278 ----------------~v~~~~~~~~~l~~~~-d~-------------------~i~iwd~~~~~~~~~~~~~-~~----  316 (520)
                                      ...++.++..+++.+. ++                   .|..+|.++|+.+..+... |.    
T Consensus       222 ~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~  301 (689)
T 1yiq_A          222 WFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDY  301 (689)
T ss_dssp             CCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCC
T ss_pred             cCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccc
Confidence                            0234556778888887 54                   3999999999999887642 21    


Q ss_pred             ---cceEEEEecCCCC---EEEEEeCCCeEEEEEcccCcc
Q 009993          317 ---GNTKSLARSHTGD---FLFTGGEDGAIHMYEIINDCT  350 (520)
Q Consensus       317 ---~~i~~l~~s~~~~---~l~tg~~dg~i~iwd~~~~~~  350 (520)
                         .++.......+|+   .++.++.+|.++++|..+++.
T Consensus       302 ~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  341 (689)
T 1yiq_A          302 TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL  341 (689)
T ss_dssp             CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence               1222222223554   788999999999999999854

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.24  E-value=3.6e-10  Score=107.72  Aligned_cols=170  Identities=10%  Similarity=-0.044  Sum_probs=126.5

Q ss_pred             cEEEEEEccCCCEEEEEeCCCeEEEEECCCCc-----------EEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcc
Q 009993          144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF-----------SIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAV  212 (520)
Q Consensus       144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~  212 (520)
                      .+..+++++...++++|+.++ +++|++.+..           ..... .+.. |..+..+++.|+++ .++.|++||+.
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~  114 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCFHGDQVLVS-TRNALYSLDLE  114 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEEETTEEEEE-ESSEEEEEESS
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEECCCEEEEE-cCCcEEEEEch
Confidence            688999999999999999986 6669865332           11112 2334 66666688999999 88999999987


Q ss_pred             cCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEeeCCCEEEEE
Q 009993          213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVAST  292 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~  292 (520)
                      +..             .......|...+.++.+.+..+++++.||.|.+||+.++....   +...|.+++...+-++.|
T Consensus       115 sl~-------------~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG~~vg  178 (388)
T 1xip_A          115 ELS-------------EFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQLAVL  178 (388)
T ss_dssp             STT-------------CEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSEEEEE
T ss_pred             hhh-------------ccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCceEEE
Confidence            642             2234456777888888855459999999999999999887653   456788888333335566


Q ss_pred             c-CCeEEEEECCCCee--eEEeec--------ccccceEEEEecCCCCEEEE
Q 009993          293 S-GSDVYIWDTNSGCL--LTVVNG--------AHVGNTKSLARSHTGDFLFT  333 (520)
Q Consensus       293 ~-d~~i~iwd~~~~~~--~~~~~~--------~~~~~i~~l~~s~~~~~l~t  333 (520)
                      . ||++++|+...++.  ...+..        +|...|.++.|.+++.++++
T Consensus       179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            6 99999999988875  555521        36788999999999998886

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.20  E-value=1.3e-08  Score=95.38  Aligned_cols=233  Identities=11%  Similarity=0.067  Sum_probs=142.8

Q ss_pred             EEEecCCCEEEE-------EeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEecCCe
Q 009993          188 RAVAADKKLLVA-------GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMT  258 (520)
Q Consensus       188 ~~~~~~~~~l~s-------g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~  258 (520)
                      .++.+++.++++       +..++.|.+||..++....+..         ....++...+.++++++  ..++.++.++.
T Consensus        23 ~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---------~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~   93 (314)
T 1pjx_A           23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK---------PEVNGYGGIPAGCQCDRDANQLFVADMRLG   93 (314)
T ss_dssp             EEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC---------CEETTEECCEEEEEECSSSSEEEEEETTTE
T ss_pred             ceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe---------cccCCCCCCCceEEEecCCCcEEEEECCCC
Confidence            345578887777       5778899999977664221110         00112456788999943  46666665568


Q ss_pred             EEEEECCCCcEEEE-ee-----eccCEEEEe--eCCCEEEEEc-C---------------CeEEEEECCCCeeeEEeecc
Q 009993          259 VRVWDRALLKCLKV-LR-----HSDWVYGLA--PHDTTVASTS-G---------------SDVYIWDTNSGCLLTVVNGA  314 (520)
Q Consensus       259 v~iwd~~~~~~~~~-~~-----~~~~v~~~~--~~~~~l~~~~-d---------------~~i~iwd~~~~~~~~~~~~~  314 (520)
                      |.+||.. ++.... ..     ....+.++.  ++++++++.. +               +.|..||.. ++.....  .
T Consensus        94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~--~  169 (314)
T 1pjx_A           94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD--T  169 (314)
T ss_dssp             EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE--E
T ss_pred             EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec--c
Confidence            9999998 765443 22     112355555  7788777766 4               568888876 5543332  2


Q ss_pred             cccceEEEEec----CCCCEEEEE-eCCCeEEEEEcccCccccceeeeeeecCCc-CCEEEEEecC--CEEEEEeCCCcE
Q 009993          315 HVGNTKSLARS----HTGDFLFTG-GEDGAIHMYEIINDCTEANVLLVATWIPHT-GPVNSLAFEF--PWLVSAAGDGKL  386 (520)
Q Consensus       315 ~~~~i~~l~~s----~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~--~~l~s~s~dg~i  386 (520)
                      +......++++    |+++.++.+ ..++.|.+||+..............+..+. ..+..+++++  .++++...++.|
T Consensus       170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i  249 (314)
T 1pjx_A          170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI  249 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence            44557889999    999765554 567899999986321111112233344444 5678899975  566666678899


Q ss_pred             EEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEE--ecCC-EEEEecCCCeEEEEeCCc
Q 009993          387 SLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD--IGAD-RIVCGGEEGIVRIWNFSQ  452 (520)
Q Consensus       387 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~-~l~sg~~Dg~v~iwd~~~  452 (520)
                      .+||..++...                   ..+..+...+.++.  ++++ ++++...++.|..|++..
T Consensus       250 ~~~d~~~g~~~-------------------~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          250 EVFGPDGGQPK-------------------MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEECTTCBSCS-------------------EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEcCCCCcEe-------------------EEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            99998753211                   11111222344444  5566 555666778999999874

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.18  E-value=3e-09  Score=111.38  Aligned_cols=236  Identities=11%  Similarity=0.023  Sum_probs=146.2

Q ss_pred             ccccccEEEEEEccCCCEEEE-----EeCCCeEEEEECCCCcEEEE-eCCCCceEEEEecCCCEEEEEeCCCc-------
Q 009993          139 YGHTEAVLTVFVLASAKLLFT-----SGYDSIVRMWHLEDGFSIAS-SKPLGCTIRAVAADKKLLVAGGTDGF-------  205 (520)
Q Consensus       139 ~~h~~~V~~l~~~~~~~~l~s-----gs~dg~v~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~l~sg~~dg~-------  205 (520)
                      ++|...+..++|||||++||-     |+.+.+|++||+.+++.+.. +........+++ |++.|+.++.+..       
T Consensus       125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            457778999999999998884     33346799999999986543 222212334678 9999998888743       


Q ss_pred             ------EEEEEcccCcceeeeccCCccccceEEecc-CCCCeEEEEE--cCCEEEEEec----CCeEEEEECCCCc-EEE
Q 009993          206 ------IHCWRAVEVLPHLFDISGSEKQNTQFRLWE-HEGPITSLAL--DLTRIYSGSW----DMTVRVWDRALLK-CLK  271 (520)
Q Consensus       206 ------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~s~s~----dg~v~iwd~~~~~-~~~  271 (520)
                            |++|++.++..         ....+..... |...+..+.+  |+++|+....    +..|+++|+.++. ...
T Consensus       204 ~~~~~~v~~~~lgt~~~---------~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~  274 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQE---------DDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL  274 (693)
T ss_dssp             -CCCCEEEEEETTSCGG---------GCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE
T ss_pred             cCCCcEEEEEECCCCcc---------cceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE
Confidence                  88898876531         0111222222 3445677777  7777654432    2589999998763 233


Q ss_pred             Ee-eeccCEEE-EeeCCCEEEE-Ec-C---CeEEEEECCCCee--eEEeecccccceEEEEecCCCCEEEEEeC-CC--e
Q 009993          272 VL-RHSDWVYG-LAPHDTTVAS-TS-G---SDVYIWDTNSGCL--LTVVNGAHVGNTKSLARSHTGDFLFTGGE-DG--A  339 (520)
Q Consensus       272 ~~-~~~~~v~~-~~~~~~~l~~-~~-d---~~i~iwd~~~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~tg~~-dg--~  339 (520)
                      .+ .+...... +.+++..++. +. +   +.|..+|+.++..  ...+. .|...+.  .|+++++.|+.... ++  .
T Consensus       275 ~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~--~~s~~g~~lv~~~~~~g~~~  351 (693)
T 3iuj_A          275 TVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI-PERQQVL--TVHSGSGYLFAEYMVDATAR  351 (693)
T ss_dssp             EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE-CCCSSCE--EEEEETTEEEEEEEETTEEE
T ss_pred             EEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe-cCCCCEE--EEEEECCEEEEEEEECCeeE
Confidence            33 34333333 5566665544 43 3   5799999988754  23444 3555554  88899988776655 44  6


Q ss_pred             EEEEEcccCccccceeeeeee-cCCcCCEEEEEecC--CEE-EEEeC---CCcEEEEeCCcc
Q 009993          340 IHMYEIINDCTEANVLLVATW-IPHTGPVNSLAFEF--PWL-VSAAG---DGKLSLIDVRKL  394 (520)
Q Consensus       340 i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~--~~l-~s~s~---dg~i~vwd~~~~  394 (520)
                      |++||+..+.       ...+ ....+.+..+.+++  +.| ++.+.   -++|..||+.++
T Consensus       352 l~~~d~~g~~-------~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g  406 (693)
T 3iuj_A          352 VEQFDYEGKR-------VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG  406 (693)
T ss_dssp             EEEECTTSCE-------EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred             EEEEECCCCe-------eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence            8888887541       1222 23344566666653  333 33332   278999998754

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.17  E-value=7.1e-08  Score=89.51  Aligned_cols=228  Identities=9%  Similarity=-0.005  Sum_probs=146.9

Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEE-EeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcccCcce
Q 009993          141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA-SSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPH  217 (520)
Q Consensus       141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~-~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~  217 (520)
                      +...+.+++++++|++.++...++.|..||.. ++... ........+..+  .+++.++++...++.|..+|.. +.. 
T Consensus        60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-  136 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI-  136 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE-
T ss_pred             CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE-
Confidence            34678999999999988877778899999987 55432 222222334444  4778877777668889988875 321 


Q ss_pred             eeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--eccCEEEEe--eCCCEEEE
Q 009993          218 LFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA--PHDTTVAS  291 (520)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~--~~~~~l~~  291 (520)
                                 ....+......+.++++  +++..++...++.|..+|. +++......  ....+.++.  ++++++++
T Consensus       137 -----------~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~  204 (300)
T 2qc5_A          137 -----------YEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFV  204 (300)
T ss_dssp             -----------EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred             -----------EEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEE
Confidence                       11122234456788888  4565555555789999998 555443211  234566665  66777777


Q ss_pred             Ec-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEE
Q 009993          292 TS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL  370 (520)
Q Consensus       292 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l  370 (520)
                      .. .+.|.+||. ++.........+...+.+++++++|.+.++...++.|..||.. +.     .....+......+.++
T Consensus       205 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~-----~~~~~~~~~~~~~~~i  277 (300)
T 2qc5_A          205 EIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NT-----IQEYQLQTENAEPHGI  277 (300)
T ss_dssp             ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC-----EEEEECCSTTCCCCCE
T ss_pred             ccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-Cc-----EEEEECCccCCcccee
Confidence            66 678999998 5544333222345678899999999977777677899999983 31     1122223334567888


Q ss_pred             EecC-CEEEEEeCCCcEEEEeC
Q 009993          371 AFEF-PWLVSAAGDGKLSLIDV  391 (520)
Q Consensus       371 ~~~~-~~l~s~s~dg~i~vwd~  391 (520)
                      .+++ ..|..++.. .|..+|.
T Consensus       278 ~~~~~g~l~v~~~~-~i~~~~p  298 (300)
T 2qc5_A          278 TFGKDGSVWFALKC-KIGKLNL  298 (300)
T ss_dssp             EECTTSCEEEECSS-EEEEEEE
T ss_pred             EeCCCCCEEEEccC-ceEEeCC
Confidence            8875 345555544 6766664

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.15  E-value=8.2e-09  Score=99.77  Aligned_cols=271  Identities=13%  Similarity=0.074  Sum_probs=168.0

Q ss_pred             cCCCEEEEEeCC-----CeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEe----------CCCcEEEEEcccCcc
Q 009993          152 ASAKLLFTSGYD-----SIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGG----------TDGFIHCWRAVEVLP  216 (520)
Q Consensus       152 ~~~~~l~sgs~d-----g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~----------~dg~i~vwd~~~~~~  216 (520)
                      ++++.++.....     +.|.+.|..+++.+.++..-..+-..++|+++.++++.          .++.|.++|..+...
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v  161 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLPHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP  161 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCCceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE
Confidence            466666655442     69999999999999888633333567889999888876          367899999887642


Q ss_pred             eeeeccCCccccceEEec--c---CCCCeEEEEE--cCCEEEEEec--CCeEEEEECCCCcEEEEeeeccCEEEEeeCC-
Q 009993          217 HLFDISGSEKQNTQFRLW--E---HEGPITSLAL--DLTRIYSGSW--DMTVRVWDRALLKCLKVLRHSDWVYGLAPHD-  286 (520)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~--~---h~~~v~~l~~--~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~-  286 (520)
                      .           ....+.  .   .......+.+  |+++++++..  +++|.+.|+.+++.+..+..... ..+.+++ 
T Consensus       162 v-----------~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-~~~~p~g~  229 (426)
T 3c75_H          162 I-----------ADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-YHIFPASP  229 (426)
T ss_dssp             E-----------EEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEET
T ss_pred             E-----------EEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-eeeccCCC
Confidence            1           111111  0   0112334566  7888888764  57999999999999988874332 2333433 


Q ss_pred             CEEEEEc-CCeEEEEECCCCeeeEE----eecccccc-eEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeee
Q 009993          287 TTVASTS-GSDVYIWDTNSGCLLTV----VNGAHVGN-TKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW  360 (520)
Q Consensus       287 ~~l~~~~-d~~i~iwd~~~~~~~~~----~~~~~~~~-i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~  360 (520)
                      ..+++.+ ||.+.+.+..+++....    +.. ...+ ...+.+.+++..++..+..+.+.+.|+......    .+..+
T Consensus       230 ~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v-~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~----v~~~~  304 (426)
T 3c75_H          230 TVFYMNCRDGSLARVDFADGETKVTNTEVFHT-EDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGAT----FRAPI  304 (426)
T ss_dssp             TEEEEEETTSSEEEEECCTTCCEEEECCCCSC-TTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEE----ECCCE
T ss_pred             cEEEEEcCCCCEEEEECCCCcEEEEeeeeecc-CCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceE----Eeeee
Confidence            4444444 89988888866655432    111 1111 123567889888877788899999998655210    11110


Q ss_pred             c---C-------CcCCEEEEEecC--CEEEEEeC----------CCcEEEEeCCcccccCCCCCCCceeeeeecCCCccc
Q 009993          361 I---P-------HTGPVNSLAFEF--PWLVSAAG----------DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRM  418 (520)
Q Consensus       361 ~---~-------h~~~v~~l~~~~--~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (520)
                      .   .       .......+++++  +++++...          ++.|.+.|..+......                  +
T Consensus       305 ~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~------------------I  366 (426)
T 3c75_H          305 EALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINK------------------I  366 (426)
T ss_dssp             ESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE------------------E
T ss_pred             eeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEE------------------E
Confidence            0   0       001111245654  55555432          35799999988532211                  1


Q ss_pred             ccCcceeeEEEEecCC-EEEEec-CCCeEEEEeCCchHhHH
Q 009993          419 LHGFECNLLSVDIGAD-RIVCGG-EEGIVRIWNFSQAFEIE  457 (520)
Q Consensus       419 ~~~~~~~v~~~~~~~~-~l~sg~-~Dg~v~iwd~~~~~~~~  457 (520)
                      .-+....-..++++++ +++++. .++.|.++|..+.+.++
T Consensus       367 ~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~  407 (426)
T 3c75_H          367 ELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELR  407 (426)
T ss_dssp             EEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             ECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEE
Confidence            1122344556777888 777777 59999999999886553

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.15  E-value=3.9e-09  Score=111.50  Aligned_cols=265  Identities=13%  Similarity=0.013  Sum_probs=153.0

Q ss_pred             ccCCCEEEEEeCCCe---EEEEECC-----CCcEEEEe------CCCCce--EEEEecCCCEEEEEeCC-----CcEEEE
Q 009993          151 LASAKLLFTSGYDSI---VRMWHLE-----DGFSIASS------KPLGCT--IRAVAADKKLLVAGGTD-----GFIHCW  209 (520)
Q Consensus       151 ~~~~~~l~sgs~dg~---v~vwd~~-----~~~~~~~~------~~~~~~--v~~~~~~~~~l~sg~~d-----g~i~vw  209 (520)
                      +|+|++++....++.   -.+|...     .+.....+      .+|...  -.+++|||++|+.++.+     ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            388988886665443   4556543     33322211      223222  34567999999877654     359999


Q ss_pred             EcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCe--------------EEEEECCCCcE--EE
Q 009993          210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMT--------------VRVWDRALLKC--LK  271 (520)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~--------------v~iwd~~~~~~--~~  271 (520)
                      |+.++...              ....+...+..++|  | +.|+.++.|+.              |++|++.++..  ..
T Consensus       195 dl~tg~~~--------------~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~l  259 (741)
T 1yr2_A          195 GVADGKPL--------------ADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQP  259 (741)
T ss_dssp             ETTTCCEE--------------EEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEE
T ss_pred             ECCCCCCC--------------CccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEE
Confidence            99887421              11111111245677  6 78888776654              89999987652  22


Q ss_pred             Eee---eccCEEEE--eeCCCEEEEEc-CC-----eEEEEECCCC--eeeEEeecccccceEEEEecCCCCEEEEEeCC-
Q 009993          272 VLR---HSDWVYGL--APHDTTVASTS-GS-----DVYIWDTNSG--CLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-  337 (520)
Q Consensus       272 ~~~---~~~~v~~~--~~~~~~l~~~~-d~-----~i~iwd~~~~--~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d-  337 (520)
                      .+.   +...+..+  +++|++++..+ ++     .|++||+.++  +....+.. +...+.... +|+|+.|+..+.+ 
T Consensus       260 v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~~~~-~~dg~~l~~~s~~~  337 (741)
T 1yr2_A          260 VFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP-DLKAQWDFV-DGVGDQLWFVSGDG  337 (741)
T ss_dssp             EECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC-SSSSCEEEE-EEETTEEEEEECTT
T ss_pred             EeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC-CCCceEEEE-eccCCEEEEEECCC
Confidence            232   22345554  48998887766 44     7999999887  31444442 444444443 4889988877653 


Q ss_pred             ---CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecC
Q 009993          338 ---GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVE  413 (520)
Q Consensus       338 ---g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  413 (520)
                         +.|.+||+.++.  .  .....+..+...+..+.+.. .++++...|+..+||.+...        +..        
T Consensus       338 ~~~~~l~~~d~~~~~--~--~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~--------g~~--------  397 (741)
T 1yr2_A          338 APLKKIVRVDLSGST--P--RFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLD--------GKP--------  397 (741)
T ss_dssp             CTTCEEEEEECSSSS--C--EEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETT--------SCE--------
T ss_pred             CCCCEEEEEeCCCCc--c--ccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCC--------CCc--------
Confidence               459999987742  0  12222334455567777765 46777888998888765421        000        


Q ss_pred             CCcccccC-cceeeEEEE--ecCCEEE----EecCCCeEEEEeCCchH
Q 009993          414 PPQRMLHG-FECNLLSVD--IGADRIV----CGGEEGIVRIWNFSQAF  454 (520)
Q Consensus       414 ~~~~~~~~-~~~~v~~~~--~~~~~l~----sg~~Dg~v~iwd~~~~~  454 (520)
                        ...+.. ....+..++  ++++.|+    +....++|++||+.++.
T Consensus       398 --~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          398 --AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             --EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             --eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence              011111 123344444  4555343    33456899999998764

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.15  E-value=1.1e-08  Score=96.95  Aligned_cols=227  Identities=11%  Similarity=0.007  Sum_probs=150.4

Q ss_pred             EEEEccCCCEEEEEe----------CCCeEEEEECCCCcEEEEeCC---------CCceEEEEecCCCEEEEEeC--CCc
Q 009993          147 TVFVLASAKLLFTSG----------YDSIVRMWHLEDGFSIASSKP---------LGCTIRAVAADKKLLVAGGT--DGF  205 (520)
Q Consensus       147 ~l~~~~~~~~l~sgs----------~dg~v~vwd~~~~~~~~~~~~---------~~~~v~~~~~~~~~l~sg~~--dg~  205 (520)
                      .++++|||++++.++          .++.|.+||..+++.+.++..         ....-..++++|++++++..  ++.
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence            499999999888775          367899999999998887642         12344688899999998864  689


Q ss_pred             EEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCC-CcEEEEee-e----ccC
Q 009993          206 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRAL-LKCLKVLR-H----SDW  278 (520)
Q Consensus       206 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~-~----~~~  278 (520)
                      |.++|+.++.             ....+.-. + ...+.- ....+++.+.||++.+.++.+ ++...... .    ..+
T Consensus       162 VsVID~~t~~-------------vv~tI~v~-g-~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~  226 (386)
T 3sjl_D          162 VGVVDLEGKA-------------FKRMLDVP-D-CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEF  226 (386)
T ss_dssp             EEEEETTTTE-------------EEEEEECC-S-EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSC
T ss_pred             EEEEECCCCc-------------EEEEEECC-C-cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccccc
Confidence            9999998763             22222111 1 111112 456788889999999999876 55432211 1    112


Q ss_pred             EE---EEe-eCCCEEEEEcCCeEEEEECCCCe--eeEEee---------cccccceEEEEecCCCCEEEEEeC-------
Q 009993          279 VY---GLA-PHDTTVASTSGSDVYIWDTNSGC--LLTVVN---------GAHVGNTKSLARSHTGDFLFTGGE-------  336 (520)
Q Consensus       279 v~---~~~-~~~~~l~~~~d~~i~iwd~~~~~--~~~~~~---------~~~~~~i~~l~~s~~~~~l~tg~~-------  336 (520)
                      +.   .+. +++++++++.+|.|++.|..++.  ....+.         .-..+....++++++++.++....       
T Consensus       227 ~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~h  306 (386)
T 3sjl_D          227 LINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRH  306 (386)
T ss_dssp             BCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCT
T ss_pred             ccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccccc
Confidence            21   233 57777777778999999997664  222221         001233445777999998887643       


Q ss_pred             ---CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--C-EEEEE-eCCCcEEEEeCCccc
Q 009993          337 ---DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P-WLVSA-AGDGKLSLIDVRKLL  395 (520)
Q Consensus       337 ---dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~-s~dg~i~vwd~~~~~  395 (520)
                         .+.|.++|+.+.      +.+.++..- ..+..|.+++  + +|++. ..++.|.++|..++.
T Consensus       307 k~~~~~V~viD~~t~------kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k  365 (386)
T 3sjl_D          307 KTASRFVVVLDAKTG------ERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  365 (386)
T ss_dssp             TSCEEEEEEEETTTC------CEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCCCEEEEEECCCC------eEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence               256999999998      444444321 2577888865  3 66665 458999999998853

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.13  E-value=3.7e-11  Score=79.01  Aligned_cols=47  Identities=36%  Similarity=0.470  Sum_probs=40.3

Q ss_pred             cccccCCCHHHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhhh
Q 009993           61 RSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEF  107 (520)
Q Consensus        61 ~~~~~~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~~  107 (520)
                      ...+..||.|++.+||+||++.++.++++|||+|+.++.++.+|+.+
T Consensus         6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            34589999999999999999999999999999999999999999864

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.12  E-value=4.6e-11  Score=114.95  Aligned_cols=182  Identities=13%  Similarity=0.021  Sum_probs=101.0

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEE
Q 009993          153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR  232 (520)
Q Consensus       153 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  232 (520)
                      ++..+++++.||.|+.||..+|+.+..+.........+..++..+++++.||.|+.||..+++... ........     
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w-~~~~~~~~-----   81 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLT-KLPFTIPE-----   81 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEECTTTCCEEEC-----CCSE-ECSCCHHH-----
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEEeCCCCEEEEEECCCCceee-eeeccCcc-----
Confidence            578899999999999999999999888765111111123567778888899999999998774311 00000000     


Q ss_pred             eccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEe
Q 009993          233 LWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVV  311 (520)
Q Consensus       233 ~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~  311 (520)
                      . ....++.   .+++.+++++.|+.|+.||..+|+.+..+..... ....+++..+++++ ++.|+.||.++|+.+..+
T Consensus        82 ~-~~~sp~~---~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~-~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~  156 (369)
T 2hz6_A           82 L-VQASPCR---SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA-DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNA  156 (369)
T ss_dssp             H-HTTCSCC--------CCCCEEEEEEEEECCC-----------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred             c-cccCceE---ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc-ccccccCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence            0 0111111   1456788899999999999999998877763332 22345777777777 899999999999887766


Q ss_pred             ecccccceEEEEecCCC---CEEEEEeCCCeEEEEEcccC
Q 009993          312 NGAHVGNTKSLARSHTG---DFLFTGGEDGAIHMYEIIND  348 (520)
Q Consensus       312 ~~~~~~~i~~l~~s~~~---~~l~tg~~dg~i~iwd~~~~  348 (520)
                      .. +.  .....+.++.   ..+++++.||.|+.||..++
T Consensus       157 ~~-~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG  193 (369)
T 2hz6_A          157 TY-FD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG  193 (369)
T ss_dssp             EE-EE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred             ec-cc--ccCccccCCccccceEEEECCCCEEEEEECCCC
Confidence            42 11  1223333332   56778899999999999988

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.10  E-value=1.7e-07  Score=87.07  Aligned_cols=212  Identities=10%  Similarity=-0.020  Sum_probs=131.5

Q ss_pred             ccEEEEEEccC-CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeec
Q 009993          143 EAVLTVFVLAS-AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDI  221 (520)
Q Consensus       143 ~~V~~l~~~~~-~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  221 (520)
                      .---+..|+|+ +.++++...++.|..||..++..............++.++++++++ . ++.|.+||..++....+  
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~--   88 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVL--   88 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEE--
T ss_pred             ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEE--
Confidence            34457789985 5566677778999999998876532222222333445588885544 4 56799999876642211  


Q ss_pred             cCCccccceEEec--cCCCCeEEEEE--cCCEEEEEecC---------CeEEEEECCC-CcEEEEeeeccCEEEEe--eC
Q 009993          222 SGSEKQNTQFRLW--EHEGPITSLAL--DLTRIYSGSWD---------MTVRVWDRAL-LKCLKVLRHSDWVYGLA--PH  285 (520)
Q Consensus       222 ~~~~~~~~~~~~~--~h~~~v~~l~~--~~~~l~s~s~d---------g~v~iwd~~~-~~~~~~~~~~~~v~~~~--~~  285 (520)
                               ....  .....+.++++  +++..++...+         ..-.+|.+.. ++...........+.+.  ++
T Consensus        89 ---------~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spd  159 (297)
T 3g4e_A           89 ---------ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLD  159 (297)
T ss_dssp             ---------EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTT
T ss_pred             ---------EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCC
Confidence                     1110  11234678888  55655443221         2234554432 34333333333344444  78


Q ss_pred             CCEEEEE-c-CCeEEEEEC--CCCeee--EEee--cccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeee
Q 009993          286 DTTVAST-S-GSDVYIWDT--NSGCLL--TVVN--GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV  357 (520)
Q Consensus       286 ~~~l~~~-~-d~~i~iwd~--~~~~~~--~~~~--~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~  357 (520)
                      ++.++.+ + ++.|.+||+  .++...  ..+.  ..+.+.+..+++.++|++.++...++.|.+||..++      +.+
T Consensus       160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG------~~~  233 (297)
T 3g4e_A          160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG------KRL  233 (297)
T ss_dssp             SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC------CEE
T ss_pred             CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc------eEE
Confidence            8866554 4 689999987  455431  1111  123456789999999998888888889999999877      556


Q ss_pred             eeecCCcCCEEEEEec
Q 009993          358 ATWIPHTGPVNSLAFE  373 (520)
Q Consensus       358 ~~~~~h~~~v~~l~~~  373 (520)
                      ..+..+...+++++|.
T Consensus       234 ~~i~~p~~~~t~~~f~  249 (297)
T 3g4e_A          234 QTVKLPVDKTTSCCFG  249 (297)
T ss_dssp             EEEECSSSBEEEEEEE
T ss_pred             EEEECCCCCceEEEEe
Confidence            6666666789999996

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.05  E-value=4.9e-07  Score=85.17  Aligned_cols=215  Identities=13%  Similarity=0.022  Sum_probs=129.8

Q ss_pred             cEEEEEEccC-CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeecc
Q 009993          144 AVLTVFVLAS-AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS  222 (520)
Q Consensus       144 ~V~~l~~~~~-~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  222 (520)
                      -..+..|+|+ +.++++...++.|..||..+++..............+.++++++++. .+ .|.+||..++....+.  
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~--  125 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA--  125 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE--
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe--
Confidence            3467789997 45666777789999999988764322222222223345788766654 44 4889998766422110  


Q ss_pred             CCccccceEEec--cCCCCeEEEEE--cCCEEEEEec------CCeEEEEECCCCcEEEEeeeccCEEEE--eeCCCEEE
Q 009993          223 GSEKQNTQFRLW--EHEGPITSLAL--DLTRIYSGSW------DMTVRVWDRALLKCLKVLRHSDWVYGL--APHDTTVA  290 (520)
Q Consensus       223 ~~~~~~~~~~~~--~h~~~v~~l~~--~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~~~v~~~--~~~~~~l~  290 (520)
                               ...  .....+.++.+  +++..++...      .+.|..+|  +++.............+  +++++.++
T Consensus       126 ---------~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~ly  194 (326)
T 2ghs_A          126 ---------ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGY  194 (326)
T ss_dssp             ---------CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEE
T ss_pred             ---------eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEE
Confidence                     000  11235778888  4555554432      24566666  45543333333344454  47887665


Q ss_pred             EEc--CCeEEEEECC--CC-ee-----eEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeee
Q 009993          291 STS--GSDVYIWDTN--SG-CL-----LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW  360 (520)
Q Consensus       291 ~~~--d~~i~iwd~~--~~-~~-----~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~  360 (520)
                      .+.  ++.|.+||+.  ++ ..     ...+. .....+..+++.++|.+.++...++.|.+||. ++      ..+..+
T Consensus       195 v~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~-~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g------~~~~~i  266 (326)
T 2ghs_A          195 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDST-GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG------NHIARY  266 (326)
T ss_dssp             EEETTTCEEEEEEBCTTTCCBSSCCEEEEECT-TSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC------CEEEEE
T ss_pred             EEECCCCEEEEEEcccccCCcccCceEEEECC-CCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CC------CEEEEE
Confidence            554  6899999986  55 31     12221 23455678999999998877777789999998 34      334445


Q ss_pred             cCCcCCEEEEEec-C--CEEEEEe
Q 009993          361 IPHTGPVNSLAFE-F--PWLVSAA  381 (520)
Q Consensus       361 ~~h~~~v~~l~~~-~--~~l~s~s  381 (520)
                      ..+...+++++|+ +  +.|+.++
T Consensus       267 ~~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          267 EVPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             ECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             ECCCCCcEEEEEecCCCCEEEEEe
Confidence            5556679999996 4  4554443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.04  E-value=7.9e-08  Score=99.82  Aligned_cols=236  Identities=12%  Similarity=0.141  Sum_probs=148.9

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEeCCC-C----ceEE-EEecCCCEEEEEeC------CCcEEEEEcccCcceeee
Q 009993          153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPL-G----CTIR-AVAADKKLLVAGGT------DGFIHCWRAVEVLPHLFD  220 (520)
Q Consensus       153 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~-~----~~v~-~~~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~  220 (520)
                      ++..|+.++.|+.|..+|..+|+.+..+... .    ..+. .....+..+++++.      +|.|..+|..+++.. +.
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~-W~  205 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERK-WR  205 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE-EE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEE-EE
Confidence            3667888999999999999999998877644 1    1111 01122455666553      689999999988642 21


Q ss_pred             ccCCcccc--------------------ceEEeccCCCCeEEEEE--cCCEEEEEecCC-------------------eE
Q 009993          221 ISGSEKQN--------------------TQFRLWEHEGPITSLAL--DLTRIYSGSWDM-------------------TV  259 (520)
Q Consensus       221 ~~~~~~~~--------------------~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg-------------------~v  259 (520)
                      ........                    ......+.......+++  +++.++.++.++                   +|
T Consensus       206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv  285 (677)
T 1kb0_A          206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI  285 (677)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred             eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence            11100000                    00000011111224455  567888777664                   59


Q ss_pred             EEEECCCCcEEEEee---ec--------cCE-EEEeeCC---CEEEEEc-CCeEEEEECCCCeeeEEeeccccc------
Q 009993          260 RVWDRALLKCLKVLR---HS--------DWV-YGLAPHD---TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVG------  317 (520)
Q Consensus       260 ~iwd~~~~~~~~~~~---~~--------~~v-~~~~~~~---~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~------  317 (520)
                      ..+|.++++.+..+.   +.        .++ .....+|   ..++.++ +|.++++|..+|+.+..+......      
T Consensus       286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d  365 (677)
T 1kb0_A          286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD  365 (677)
T ss_dssp             EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC
T ss_pred             EEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC
Confidence            999999999988876   21        112 2223466   5777777 899999999999988776522111      


Q ss_pred             ----ce------------------------EEEEecCCCCEEEEEeCC--------------------------------
Q 009993          318 ----NT------------------------KSLARSHTGDFLFTGGED--------------------------------  337 (520)
Q Consensus       318 ----~i------------------------~~l~~s~~~~~l~tg~~d--------------------------------  337 (520)
                          ++                        ..++++|++.++++...+                                
T Consensus       366 ~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~  445 (677)
T 1kb0_A          366 KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKF  445 (677)
T ss_dssp             TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEE
T ss_pred             CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccc
Confidence                01                        146888988888875432                                


Q ss_pred             -----------CeEEEEEcccCccccceeeeeeecCCcCCEEE--EEecCCEEEEEeCCCcEEEEeCCcccc
Q 009993          338 -----------GAIHMYEIINDCTEANVLLVATWIPHTGPVNS--LAFEFPWLVSAAGDGKLSLIDVRKLLR  396 (520)
Q Consensus       338 -----------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~--l~~~~~~l~s~s~dg~i~vwd~~~~~~  396 (520)
                                 |.|..||+.++      +.+..... ..++..  +...+..++.++.||.+++||..++..
T Consensus       446 ~~~~~~~~~~~g~l~A~D~~tG------~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          446 FNAEPPKSKPFGRLLAWDPVAQ------KAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK  510 (677)
T ss_dssp             ECSSCCCSCCEEEEEEEETTTT------EEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cccccCCCCCccEEEEEeCCCC------cEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence                       77999999988      44444332 222222  334567889999999999999998643

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.03  E-value=7.8e-08  Score=100.04  Aligned_cols=236  Identities=11%  Similarity=0.074  Sum_probs=146.3

Q ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeCCC--Cc---eEE--EEecCCCEEEEEe------CCCcEEEEEcccCcceeee
Q 009993          154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPL--GC---TIR--AVAADKKLLVAGG------TDGFIHCWRAVEVLPHLFD  220 (520)
Q Consensus       154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~--~~---~v~--~~~~~~~~l~sg~------~dg~i~vwd~~~~~~~~~~  220 (520)
                      +..|+.++.|+.|..+|..+|+.+..+...  ..   .+.  -+..++ .+++++      .+|.|..||..+|+.. +.
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~-W~  198 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEA-WR  198 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEE-EE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEE-EE
Confidence            567888999999999999999988776532  10   110  011234 445543      3689999999998642 21


Q ss_pred             ccC-C-ccccc-----e----EEe--------ccCCCCeEEEEE--cCCEEEEEecCCe-------------------EE
Q 009993          221 ISG-S-EKQNT-----Q----FRL--------WEHEGPITSLAL--DLTRIYSGSWDMT-------------------VR  260 (520)
Q Consensus       221 ~~~-~-~~~~~-----~----~~~--------~~h~~~v~~l~~--~~~~l~s~s~dg~-------------------v~  260 (520)
                      ... . .....     .    ...        .++......+++  +.+.++.++.++.                   |.
T Consensus       199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~  278 (689)
T 1yiq_A          199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV  278 (689)
T ss_dssp             EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred             ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence            110 0 00000     0    000        011111124556  4578888887764                   99


Q ss_pred             EEECCCCcEEEEeee---c-------cCEE--EEeeCCC---EEEEEc-CCeEEEEECCCCeeeEEeecccccc------
Q 009993          261 VWDRALLKCLKVLRH---S-------DWVY--GLAPHDT---TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGN------  318 (520)
Q Consensus       261 iwd~~~~~~~~~~~~---~-------~~v~--~~~~~~~---~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~------  318 (520)
                      .+|.++++.+..+..   .       ....  .+..+++   .++.++ +|.++++|.++|+.+..........      
T Consensus       279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~  358 (689)
T 1yiq_A          279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDM  358 (689)
T ss_dssp             EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEET
T ss_pred             EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCc
Confidence            999999999887762   1       1111  2224554   677777 8999999999999875443211000      


Q ss_pred             --------------------------------eEEEEecCCCCEEEEEeC------------------------------
Q 009993          319 --------------------------------TKSLARSHTGDFLFTGGE------------------------------  336 (520)
Q Consensus       319 --------------------------------i~~l~~s~~~~~l~tg~~------------------------------  336 (520)
                                                      -..++++|+..++++...                              
T Consensus       359 ~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  438 (689)
T 1yiq_A          359 KTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGM  438 (689)
T ss_dssp             TTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECC
T ss_pred             cCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccc
Confidence                                            112678888888877532                              


Q ss_pred             ---------------CCeEEEEEcccCccccceeeeeeecCCcCCE-EEEEecCCEEEEEeCCCcEEEEeCCccccc
Q 009993          337 ---------------DGAIHMYEIINDCTEANVLLVATWIPHTGPV-NSLAFEFPWLVSAAGDGKLSLIDVRKLLRS  397 (520)
Q Consensus       337 ---------------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v-~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~  397 (520)
                                     +|.|+.||+.++      +.+.....+.... -.+.-.+..++.|+.||.|+.||.+++...
T Consensus       439 ~p~~~~~~~~~~~~~~g~l~A~D~~tG------~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l  509 (689)
T 1yiq_A          439 MPEGAEGLLEMAKSWSGKLIAWDPVKQ------QAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL  509 (689)
T ss_dssp             CCSSHHHHHHHHTTCEEEEEEEETTTT------EEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cCcccccCCCCCCCcceeEEEEECCCC------CeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence                           377999999998      4454443333221 133446789999999999999999986433

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.99  E-value=6.8e-11  Score=113.76  Aligned_cols=183  Identities=11%  Similarity=0.069  Sum_probs=101.1

Q ss_pred             EcCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEE--eeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEE
Q 009993          245 LDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGL--APHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKS  321 (520)
Q Consensus       245 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~  321 (520)
                      .+++.+++++.||.|+.||..+++.+..+.. ..+.+.  ..++..+++++ |+.|+.||..+|+.+..+.......+.+
T Consensus         7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             -CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eeCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            4788999999999999999999999888775 444332  25666777766 9999999999998877664221111110


Q ss_pred             -EEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCC
Q 009993          322 -LARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRP  400 (520)
Q Consensus       322 -l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~  400 (520)
                       ..+. .+..+++|+.|+.|+.||..++      +.+..+..+.. +. ..-+...+++++.|+.|+.||.+++......
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG------~~~w~~~~~~~-~~-~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~  156 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTG------EKQQTLSSAFA-DS-LSPSTSLLYLGRTEYTITMYDTKTRELRWNA  156 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC------------------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCC------cEEEEecCCCc-cc-ccccCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence             1111 3557888889999999999998      44444443321 11 1114578899999999999999886432210


Q ss_pred             CCCCceeeeeecCCCcccccCcceeeEEEEec---CCEEEEecCCCeEEEEeCCchHhH
Q 009993          401 TSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG---ADRIVCGGEEGIVRIWNFSQAFEI  456 (520)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~sg~~Dg~v~iwd~~~~~~~  456 (520)
                      .                 ......  ..+..+   ...+++++.||.|+.||..+++.+
T Consensus       157 ~-----------------~~~~~~--~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~  196 (369)
T 2hz6_A          157 T-----------------YFDYAA--SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL  196 (369)
T ss_dssp             E-----------------EEEECC--BCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred             e-----------------cccccC--ccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence            0                 000000  111111   146777888999999999887653

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.96  E-value=2.2e-07  Score=86.68  Aligned_cols=223  Identities=14%  Similarity=0.105  Sum_probs=134.1

Q ss_pred             hccccccEEEEEEccCCC-EEEEEeCCCeEEEEECCCCcEEEEeCCCCc--eEEEEecCCCEEEEEeCCCcEEEEEcccC
Q 009993          138 LYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLGC--TIRAVAADKKLLVAGGTDGFIHCWRAVEV  214 (520)
Q Consensus       138 l~~h~~~V~~l~~~~~~~-~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~l~sg~~dg~i~vwd~~~~  214 (520)
                      +..+........|+|+|+ +++++..++.|..|+. +++. ..+..+..  .-.++.++++++++...++.|.+|+.. +
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g  116 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G  116 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence            444455667889999998 6777778899999998 4442 33322223  334555888866665566789999874 3


Q ss_pred             cceeeeccCCccccceEEecc-CCCCeEEEEE--cCCEEEE----Eec-------------CCeEEEEECCCCcEEEEee
Q 009993          215 LPHLFDISGSEKQNTQFRLWE-HEGPITSLAL--DLTRIYS----GSW-------------DMTVRVWDRALLKCLKVLR  274 (520)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~s----~s~-------------dg~v~iwd~~~~~~~~~~~  274 (520)
                      ....+.          ....+ ....+.++++  +++..++    |..             .+.|..+|..+++..... 
T Consensus       117 ~~~~~~----------~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-  185 (305)
T 3dr2_A          117 QAHLLV----------GRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-  185 (305)
T ss_dssp             CEEEEE----------CEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-
T ss_pred             CEEEEE----------eccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-
Confidence            211110          00111 1234566777  5666665    332             256888887766654433 


Q ss_pred             eccCEEE--EeeCCCEEEEEc-C------CeEEEEECCCCee--eEEeecccccceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993          275 HSDWVYG--LAPHDTTVASTS-G------SDVYIWDTNSGCL--LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY  343 (520)
Q Consensus       275 ~~~~v~~--~~~~~~~l~~~~-d------~~i~iwd~~~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iw  343 (520)
                      .......  ++++++.++.+. .      +.|.+||+..+..  ...+.....+....+++.++|++.+ +..+ .|.+|
T Consensus       186 ~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~  263 (305)
T 3dr2_A          186 DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGT-GVCVF  263 (305)
T ss_dssp             EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSS-EEEEE
T ss_pred             cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCC-cEEEE
Confidence            3333344  458888777665 4      6899999876541  1112111234456788999999544 4444 49999


Q ss_pred             EcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCC
Q 009993          344 EIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDG  384 (520)
Q Consensus       344 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg  384 (520)
                      +....       .+..+..+. .+.+++|++  +.|+.++.++
T Consensus       264 ~~~g~-------~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          264 DSDGQ-------LLGHIPTPG-TASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             CTTSC-------EEEEEECSS-CCCEEEECTTSCEEEEEETTE
T ss_pred             CCCCC-------EEEEEECCC-ceeEEEEeCCCCEEEEEcCCe
Confidence            97433       344444333 578889954  5777777664

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.96  E-value=6.9e-07  Score=80.16  Aligned_cols=192  Identities=13%  Similarity=-0.015  Sum_probs=131.8

Q ss_pred             cEEEEEEccCCCEEEEEeC--CCeEEEEECCCCcEEEEeCC-CCceEEEEecCCCEEEEEe-CCCcEEEEEcccCcceee
Q 009993          144 AVLTVFVLASAKLLFTSGY--DSIVRMWHLEDGFSIASSKP-LGCTIRAVAADKKLLVAGG-TDGFIHCWRAVEVLPHLF  219 (520)
Q Consensus       144 ~V~~l~~~~~~~~l~sgs~--dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~  219 (520)
                      ....++|++++.++++.+.  ++.|++.|+.+++.+..+.- .......+..+++.|+.+. .++.+.++|..+..    
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~----   97 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLS----   97 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTE----
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCc----
Confidence            3578999998755555443  68999999999999888642 1122224454566665554 57899999987753    


Q ss_pred             eccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeec---c---CEEEEe-eCCCEEEEE
Q 009993          220 DISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHS---D---WVYGLA-PHDTTVAST  292 (520)
Q Consensus       220 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~---~---~v~~~~-~~~~~l~~~  292 (520)
                               ....+......-..++.+++.++++..+++|.++|..+.+.+..+.-.   .   .++.+. .++..++..
T Consensus        98 ---------v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~  168 (266)
T 2iwa_A           98 ---------NIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANI  168 (266)
T ss_dssp             ---------EEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred             ---------EEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEec
Confidence                     222221111222457778887777777899999999999988887621   1   245555 355444444


Q ss_pred             c-CCeEEEEECCCCeeeEEeeccc------------ccceEEEEecCCCCE-EEEEeCCCeEEEEEcccC
Q 009993          293 S-GSDVYIWDTNSGCLLTVVNGAH------------VGNTKSLARSHTGDF-LFTGGEDGAIHMYEIIND  348 (520)
Q Consensus       293 ~-d~~i~iwd~~~~~~~~~~~~~~------------~~~i~~l~~s~~~~~-l~tg~~dg~i~iwd~~~~  348 (520)
                      . ++.|.+.|+.+++.+..+..+.            ....+.++|+|+++. ++++...+.+.+.++...
T Consensus       169 ~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          169 WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            4 7899999999999988886421            135689999999875 555667889999988765

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.93  E-value=5e-07  Score=91.71  Aligned_cols=185  Identities=12%  Similarity=0.073  Sum_probs=117.8

Q ss_pred             CCEEEEEeC-CCeEEEEEC-CCCcEEEEeCCCCc-e----------EEEEecCCCEEEEEeCCCcEEEEEcccCcceeee
Q 009993          154 AKLLFTSGY-DSIVRMWHL-EDGFSIASSKPLGC-T----------IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD  220 (520)
Q Consensus       154 ~~~l~sgs~-dg~v~vwd~-~~~~~~~~~~~~~~-~----------v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  220 (520)
                      +..++.++. ++.|.-+|. .+|+.+..+..... .          .......+..++.++.|+.|..+|..+++.. +.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~-W~  140 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKIN-WE  140 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEE-EE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEE-EE
Confidence            556777777 899999999 99999887653221 0          0112234678888999999999999888532 11


Q ss_pred             ccCCccccceEEeccCC--CCeE-EEEEcCCEEEEEec------CCeEEEEECCCCcEEEEeeeccC-------------
Q 009993          221 ISGSEKQNTQFRLWEHE--GPIT-SLALDLTRIYSGSW------DMTVRVWDRALLKCLKVLRHSDW-------------  278 (520)
Q Consensus       221 ~~~~~~~~~~~~~~~h~--~~v~-~l~~~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~~~-------------  278 (520)
                      .          ....+.  ..+. +-...++.++.++.      ++.|..+|.++++.+..+.....             
T Consensus       141 ~----------~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~  210 (571)
T 2ad6_A          141 V----------EVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSA  210 (571)
T ss_dssp             E----------ECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred             e----------cCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccc
Confidence            1          111110  0111 11123556666665      79999999999999887762211             


Q ss_pred             ----------------------------EEEEeeCCCEEEEEc-C----------------CeEEEEECCCCeeeEEeec
Q 009993          279 ----------------------------VYGLAPHDTTVASTS-G----------------SDVYIWDTNSGCLLTVVNG  313 (520)
Q Consensus       279 ----------------------------v~~~~~~~~~l~~~~-d----------------~~i~iwd~~~~~~~~~~~~  313 (520)
                                                  ..++.+....++.+. +                +.|..+|.++|+.+..+..
T Consensus       211 ~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~  290 (571)
T 2ad6_A          211 NPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQK  290 (571)
T ss_dssp             CGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEES
T ss_pred             cccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecC
Confidence                                        123444555666554 2                2599999999999888763


Q ss_pred             cc-c--------cceEEEEecCCCC---EEEEEeCCCeEEEEEcccCcc
Q 009993          314 AH-V--------GNTKSLARSHTGD---FLFTGGEDGAIHMYEIINDCT  350 (520)
Q Consensus       314 ~~-~--------~~i~~l~~s~~~~---~l~tg~~dg~i~iwd~~~~~~  350 (520)
                      .+ .        .++ -+...++|+   .++.++.+|.++++|..+++.
T Consensus       291 ~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  338 (571)
T 2ad6_A          291 TPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL  338 (571)
T ss_dssp             STTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             CCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCE
Confidence            22 1        122 122234674   577889999999999988843

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.93  E-value=1.1e-08  Score=96.57  Aligned_cols=262  Identities=12%  Similarity=0.007  Sum_probs=154.6

Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeee
Q 009993          141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD  220 (520)
Q Consensus       141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  220 (520)
                      +...+.++...+++. |+.++.+  |..+|. +++.+..+.............+..++.++.++.|..+|.. +..    
T Consensus        58 ~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~----  128 (330)
T 3hxj_A           58 GEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIFEDILYVTSMDGHLYAINTD-GTE----  128 (330)
T ss_dssp             GGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEETTEEEEECTTSEEEEECTT-SCE----
T ss_pred             CCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEECCEEEEEecCCEEEEEcCC-CCE----
Confidence            344567777766665 5555555  888885 6655544432222111111126678888889999999876 421    


Q ss_pred             ccCCccccceEEeccCCCCeEEEEEc-CCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEcCCe
Q 009993          221 ISGSEKQNTQFRLWEHEGPITSLALD-LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTSGSD  296 (520)
Q Consensus       221 ~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~d~~  296 (520)
                               ......+...+.++..+ ...++.++.++.|..+|.. ++....+. ....+.++.  .++.++ .++ +.
T Consensus       129 ---------~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t-~~  196 (330)
T 3hxj_A          129 ---------KWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIY-FGS-DK  196 (330)
T ss_dssp             ---------EEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEE-EES-SS
T ss_pred             ---------EEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEE-EEe-CE
Confidence                     11222233344555554 5668888888999999998 77766665 233344444  455544 445 89


Q ss_pred             EEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEec-CC
Q 009993          297 VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE-FP  375 (520)
Q Consensus       297 i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~  375 (520)
                      |..+| .+++....... ....+.++...++|. |..++.++.+..+|. ++      ..+..+......+..+..+ ..
T Consensus       197 l~~~d-~~g~~~~~~~~-~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g------~~~~~~~~~~~~~~~~~~~~~g  266 (330)
T 3hxj_A          197 VYAIN-PDGTEKWNFYA-GYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DG------TEKWRFKTGKRIESSPVIGNTD  266 (330)
T ss_dssp             EEEEC-TTSCEEEEECC-SSCCCSCCEECTTSC-EEEEETTTEEEEECT-TS------CEEEEEECSSCCCSCCEECTTS
T ss_pred             EEEEC-CCCcEEEEEcc-CCcceeceEECCCCe-EEEEcCCCeEEEECC-CC------CEeEEeeCCCCccccceEcCCC
Confidence            99999 77777666652 445677888887775 555667888888874 33      2233333333333445555 56


Q ss_pred             EEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEe-cCCEEEEecCCCeEEEEeCCch
Q 009993          376 WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI-GADRIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       376 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~sg~~Dg~v~iwd~~~~  453 (520)
                      .|..++.+|.|..+|. ++....         .          .......+.++.. .+..|..|+.+|.+++...+..
T Consensus       267 ~l~v~t~~ggl~~~d~-~g~~~~---------~----------~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          267 TIYFGSYDGHLYAINP-DGTEKW---------N----------FETGSWIIATPVIDENGTIYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             CEEEECTTCEEEEECT-TSCEEE---------E----------EECSSCCCSCCEECTTCCEEEECTTSCEEEEEC---
T ss_pred             eEEEecCCCCEEEECC-CCcEEE---------E----------EEcCCccccceEEcCCCEEEEEcCCCeEEEEecccc
Confidence            8888999989999985 321110         0          0001112223333 2336777899999999877643

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.93  E-value=2e-07  Score=90.76  Aligned_cols=237  Identities=10%  Similarity=0.011  Sum_probs=135.3

Q ss_pred             EEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCC--eEEEEE
Q 009993          188 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM--TVRVWD  263 (520)
Q Consensus       188 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg--~v~iwd  263 (520)
                      .++.++++++++...++.|++||..++...              .+........ +++  +++.|+++..++  .|.+++
T Consensus       136 la~d~~g~lyv~d~~~~~I~~id~~~g~~~--------------~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d  200 (409)
T 3hrp_A          136 IAAVGNNTVLAYQRDDPRVRLISVDDNKVT--------------TVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYM  200 (409)
T ss_dssp             EEECSTTEEEEEETTTTEEEEEETTTTEEE--------------EEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEE
T ss_pred             EEEeCCCCEEEEecCCCcEEEEECCCCEEE--------------EeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEE
Confidence            455588887777777899999998765321              1111112222 666  667888888766  899999


Q ss_pred             CCCCcEEEEe----e-eccCEEEE--eeCCCEEEEEc-CCeEEEEECCCCeeeEEe---ecccccce-E-EEEecCC-CC
Q 009993          264 RALLKCLKVL----R-HSDWVYGL--APHDTTVASTS-GSDVYIWDTNSGCLLTVV---NGAHVGNT-K-SLARSHT-GD  329 (520)
Q Consensus       264 ~~~~~~~~~~----~-~~~~v~~~--~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~---~~~~~~~i-~-~l~~s~~-~~  329 (520)
                      ...+.....+    . ....+.++  .+++..|+.+. ++.|+.||..++.....-   ..++...- . .++|+|+ +.
T Consensus       201 ~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~  280 (409)
T 3hrp_A          201 KASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN  280 (409)
T ss_dssp             GGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE
T ss_pred             cCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE
Confidence            8776554444    2 22333444  46344455555 789999999877643220   11222222 3 8999995 55


Q ss_pred             EEEEEeCCCeEEEEEcccCccccceeeeeeecCC---------------cCCEEEEEecC--CEEEEEe-CCCcEEEEeC
Q 009993          330 FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH---------------TGPVNSLAFEF--PWLVSAA-GDGKLSLIDV  391 (520)
Q Consensus       330 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h---------------~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~  391 (520)
                      ++++-..++.|+.|+....        +..+.++               -.....+++++  .++++-+ .++.|+.|++
T Consensus       281 lyv~d~~~~~I~~~~~~g~--------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~  352 (409)
T 3hrp_A          281 FYMSDQNLSSVYKITPDGE--------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDI  352 (409)
T ss_dssp             EEEEETTTTEEEEECTTCC--------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEET
T ss_pred             EEEEeCCCCEEEEEecCCC--------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEEC
Confidence            5666667889999987643        1111111               23578999976  5666666 7899999997


Q ss_pred             CcccccCCCCC-CCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCC
Q 009993          392 RKLLRSGRPTS-GKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       392 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~  451 (520)
                      .++........ +...  ..  ........-....-.++++++.++++-..++.|+.++++
T Consensus       353 ~~G~v~~~~g~~~~~g--~~--~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          353 LDGYVSTVAGQVDVAS--QI--DGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             TTTEEEEEEECTTCBS--CC--CBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             CCCEEEEEeCCCCCCC--cC--CCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence            55421100000 0000  00  000000000112234555555577787888888887753

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.92  E-value=1.2e-06  Score=81.21  Aligned_cols=185  Identities=10%  Similarity=0.049  Sum_probs=115.8

Q ss_pred             EEecC-CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECC
Q 009993          189 AVAAD-KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRA  265 (520)
Q Consensus       189 ~~~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~  265 (520)
                      .+.++ +.++++...++.|..||..++..               ........+.++++  +++ ++.+. ++.|.+||..
T Consensus        19 ~w~~~~~~l~~~d~~~~~i~~~d~~~~~~---------------~~~~~~~~~~~i~~~~dG~-l~v~~-~~~l~~~d~~   81 (297)
T 3g4e_A           19 VWEEVSNSLLFVDIPAKKVCRWDSFTKQV---------------QRVTMDAPVSSVALRQSGG-YVATI-GTKFCALNWK   81 (297)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTTCCE---------------EEEECSSCEEEEEEBTTSS-EEEEE-TTEEEEEETT
T ss_pred             eEECCCCEEEEEECCCCEEEEEECCCCcE---------------EEEeCCCceEEEEECCCCC-EEEEE-CCeEEEEECC
Confidence            44554 45666667789999999876531               11123467889999  556 44444 5689999998


Q ss_pred             CCcEEEEeee-----ccCEEEEe--eCCCEEEEEc-C-----------CeEEEEECCCCeeeEEeecccccceEEEEecC
Q 009993          266 LLKCLKVLRH-----SDWVYGLA--PHDTTVASTS-G-----------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH  326 (520)
Q Consensus       266 ~~~~~~~~~~-----~~~v~~~~--~~~~~l~~~~-d-----------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~  326 (520)
                      +++.......     ...++.+.  ++++++++.. .           +.|+.+|.. ++... +. ......+.++|+|
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~-~~~~~pngi~~sp  158 (297)
T 3g4e_A           82 EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YF-DQVDISNGLDWSL  158 (297)
T ss_dssp             TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EE-EEESBEEEEEECT
T ss_pred             CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-Ee-eccccccceEEcC
Confidence            8765443331     12355554  7888777653 2           245555543 33322 22 2445678999999


Q ss_pred             CCCEEE-EEeCCCeEEEEEcc--cCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993          327 TGDFLF-TGGEDGAIHMYEII--NDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       327 ~~~~l~-tg~~dg~i~iwd~~--~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  394 (520)
                      +++.|+ +.+.++.|.+|++.  ++. .........+..+.+.+..+++++  ++.++...++.|.+||..++
T Consensus       159 dg~~lyv~~~~~~~i~~~~~d~~~G~-~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG  230 (297)
T 3g4e_A          159 DHKIFYYIDSLSYSVDAFDYDLQTGQ-ISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG  230 (297)
T ss_dssp             TSCEEEEEEGGGTEEEEEEECTTTCC-EEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC
T ss_pred             CCCEEEEecCCCCcEEEEeccCCCCc-ccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc
Confidence            998765 55567899999984  332 111122333444456678899965  56666667788999998763

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.90  E-value=2e-07  Score=96.70  Aligned_cols=189  Identities=14%  Similarity=0.038  Sum_probs=122.1

Q ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCce-----------EEEEecCCCEEEEEeCCCcEEEEEcccCcceeeecc
Q 009993          154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT-----------IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS  222 (520)
Q Consensus       154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  222 (520)
                      +..|+.++.++.|.-+|..+|+.+.++......           .......+..++.++.|+.|..+|..+|+.. +...
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~-W~~~  144 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAI-WSQQ  144 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEE-EEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEe-eeec
Confidence            567788888999999999999998887543210           0112224678888999999999999988632 1111


Q ss_pred             CCccccceEEeccCCCCeEEEEEcCCEEEEEec------CCeEEEEECCCCcEEEEeeec--cC----------------
Q 009993          223 GSEKQNTQFRLWEHEGPITSLALDLTRIYSGSW------DMTVRVWDRALLKCLKVLRHS--DW----------------  278 (520)
Q Consensus       223 ~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~--~~----------------  278 (520)
                      ......   .......+    .+.++.++.+..      +|.|..+|.++++.+..+...  .+                
T Consensus       145 ~~~~~~---~~~~~~~P----~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~  217 (668)
T 1kv9_A          145 TTDPAK---PYSITGAP----RVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTW  217 (668)
T ss_dssp             CSCTTS---SCBCCSCC----EEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTC
T ss_pred             cCCCCC---cceecCCC----EEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccC
Confidence            100000   00001111    123556666653      589999999999998877521  00                


Q ss_pred             ----------------EEEEeeCCCEEEEEc-CC-------------------eEEEEECCCCeeeEEeecc-cc-----
Q 009993          279 ----------------VYGLAPHDTTVASTS-GS-------------------DVYIWDTNSGCLLTVVNGA-HV-----  316 (520)
Q Consensus       279 ----------------v~~~~~~~~~l~~~~-d~-------------------~i~iwd~~~~~~~~~~~~~-~~-----  316 (520)
                                      ..++.+...+++.+. ++                   .|..+|.++|+.+..+... |.     
T Consensus       218 ~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~  297 (668)
T 1kv9_A          218 QGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFT  297 (668)
T ss_dssp             CSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred             CccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcccccc
Confidence                            124446677777776 54                   3999999999999887643 22     


Q ss_pred             --cceEEEEecCCCC---EEEEEeCCCeEEEEEcccCcc
Q 009993          317 --GNTKSLARSHTGD---FLFTGGEDGAIHMYEIINDCT  350 (520)
Q Consensus       317 --~~i~~l~~s~~~~---~l~tg~~dg~i~iwd~~~~~~  350 (520)
                        .+.....+..+|+   .++.++.+|.++++|..+++.
T Consensus       298 ~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          298 ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence              2233333334665   688999999999999998853

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.88  E-value=1.7e-08  Score=95.23  Aligned_cols=214  Identities=9%  Similarity=0.003  Sum_probs=134.0

Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEec-CCCEEEEEeCCCcEEEEEcccCcceeeeccCCcc
Q 009993          148 VFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAA-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEK  226 (520)
Q Consensus       148 l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~  226 (520)
                      ..+..++ .|+.++.++.|..|| .+++.+.........+.++.. .+..++.++.+  |..+|. ++.. .+.      
T Consensus        25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~-~~~------   92 (330)
T 3hxj_A           25 PILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTE-KWR------   92 (330)
T ss_dssp             CEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGG-GGG------
T ss_pred             ceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CCcE-EEE------
Confidence            3444455 467777888899999 888877665544444455543 34566666655  878875 3321 100      


Q ss_pred             ccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEcCCeEEEEECC
Q 009993          227 QNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTSGSDVYIWDTN  303 (520)
Q Consensus       227 ~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~d~~i~iwd~~  303 (520)
                            +...........+.++.++.++.++.|..+|.. ++...... ....+.++.  .++.+++.+.++.|..+|..
T Consensus        93 ------~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~  165 (330)
T 3hxj_A           93 ------FDTKKAIVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD  165 (330)
T ss_dssp             ------SCC-----CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT
T ss_pred             ------EECCCCcccCceEECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC
Confidence                  000111122223347788889989999999998 77666655 222233333  45555444447999999999


Q ss_pred             CCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCC-EEEEEeC
Q 009993          304 SGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP-WLVSAAG  382 (520)
Q Consensus       304 ~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~  382 (520)
                       ++....+.. ....+.++...+++.++ .++  +.|..+| .++      ............+.++..+++ .|..++.
T Consensus       166 -g~~~~~~~~-~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g------~~~~~~~~~~~~~~~~~~~~~g~l~v~t~  233 (330)
T 3hxj_A          166 -GTEKWRFKT-NDAITSAASIGKDGTIY-FGS--DKVYAIN-PDG------TEKWNFYAGYWTVTRPAISEDGTIYVTSL  233 (330)
T ss_dssp             -SCEEEEEEC-SSCCCSCCEECTTCCEE-EES--SSEEEEC-TTS------CEEEEECCSSCCCSCCEECTTSCEEEEET
T ss_pred             -CCEeEEEec-CCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCC------cEEEEEccCCcceeceEECCCCeEEEEcC
Confidence             877766652 34456677777777754 444  7799999 555      334444444456778888764 8888888


Q ss_pred             CCcEEEEeCC
Q 009993          383 DGKLSLIDVR  392 (520)
Q Consensus       383 dg~i~vwd~~  392 (520)
                      ++.|..+|..
T Consensus       234 ~~gl~~~~~~  243 (330)
T 3hxj_A          234 DGHLYAINPD  243 (330)
T ss_dssp             TTEEEEECTT
T ss_pred             CCeEEEECCC
Confidence            8889888753

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.87  E-value=2.1e-07  Score=89.98  Aligned_cols=227  Identities=10%  Similarity=-0.004  Sum_probs=148.4

Q ss_pred             EEEEccCCCEEEEEe----------CCCeEEEEECCCCcEEEEeCC---------CCceEEEEecCCCEEEEEeC--CCc
Q 009993          147 TVFVLASAKLLFTSG----------YDSIVRMWHLEDGFSIASSKP---------LGCTIRAVAADKKLLVAGGT--DGF  205 (520)
Q Consensus       147 ~l~~~~~~~~l~sgs----------~dg~v~vwd~~~~~~~~~~~~---------~~~~v~~~~~~~~~l~sg~~--dg~  205 (520)
                      .++++|||++|+.+.          .++.|.++|..+++.+.++.-         ....-..+++++++++++..  ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            799999999888876          367899999999998877642         12233578899999999874  578


Q ss_pred             EEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEE----ee-eccCE
Q 009993          206 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKV----LR-HSDWV  279 (520)
Q Consensus       206 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~----~~-~~~~v  279 (520)
                      |.+.|+.+..             ....+.-. + ...+.. ....+++.+.||.+.+.+..+++....    +. ...++
T Consensus       202 VsVID~~t~k-------------vv~~I~v~-g-~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~  266 (426)
T 3c75_H          202 VGVVDLEGKT-------------FDRMLDVP-D-CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELL  266 (426)
T ss_dssp             EEEEETTTTE-------------EEEEEECC-S-EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCB
T ss_pred             EEEEECCCCe-------------EEEEEEcC-C-ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCce
Confidence            9999998763             22222211 1 112222 336677788899988888866655432    11 11111


Q ss_pred             ---EEEeeCCCEEEEEc-CCeEEEEECCCCeee--EEeecc---------cccceEEEEecCCCCEEEEEeC--------
Q 009993          280 ---YGLAPHDTTVASTS-GSDVYIWDTNSGCLL--TVVNGA---------HVGNTKSLARSHTGDFLFTGGE--------  336 (520)
Q Consensus       280 ---~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~--~~~~~~---------~~~~i~~l~~s~~~~~l~tg~~--------  336 (520)
                         ..+.+++..++... .+.|.+.|...+...  ..+...         .......++++|+++.+++...        
T Consensus       267 ~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk  346 (426)
T 3c75_H          267 INHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHK  346 (426)
T ss_dssp             CSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTT
T ss_pred             eeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccccc
Confidence               13356666665555 789999998765421  111100         1112223689999987777642        


Q ss_pred             --CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--C-EEEEEe-CCCcEEEEeCCccc
Q 009993          337 --DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P-WLVSAA-GDGKLSLIDVRKLL  395 (520)
Q Consensus       337 --dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~s-~dg~i~vwd~~~~~  395 (520)
                        ++.|.++|..+.      +.+.++... .....+.|++  + ++++.. .++.|.|+|+.+..
T Consensus       347 ~~s~~VsVID~~T~------kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k  404 (426)
T 3c75_H          347 AASRFVVVLNAETG------ERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE  404 (426)
T ss_dssp             SCEEEEEEEETTTC------CEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCCEEEEEECCCC------eEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence              357999999998      455554322 2478888865  5 788887 58999999999853

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.86  E-value=5.7e-07  Score=83.83  Aligned_cols=182  Identities=14%  Similarity=0.108  Sum_probs=112.1

Q ss_pred             EEecCCC-EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECC
Q 009993          189 AVAADKK-LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRA  265 (520)
Q Consensus       189 ~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~  265 (520)
                      .+.++++ +++++..++.|..|+. ++.              ...+..+...+..+++  +++.+++...++.|..||..
T Consensus        51 ~~~~~g~~l~~~d~~~~~i~~~~~-~g~--------------~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           51 AWWEAQRTLVWSDLVGRRVLGWRE-DGT--------------VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEET-TSC--------------EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             eEeCCCCEEEEEECCCCEEEEEeC-CCC--------------EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence            4567777 6677777899999986 331              2233345567888998  55655544456789999986


Q ss_pred             CCcEEEEeee-----ccCEEEE--eeCCCEEEE----Ec--------------CCeEEEEECCCCeeeEEeecccccceE
Q 009993          266 LLKCLKVLRH-----SDWVYGL--APHDTTVAS----TS--------------GSDVYIWDTNSGCLLTVVNGAHVGNTK  320 (520)
Q Consensus       266 ~~~~~~~~~~-----~~~v~~~--~~~~~~l~~----~~--------------d~~i~iwd~~~~~~~~~~~~~~~~~i~  320 (520)
                       ++.......     ...+..+  .++|+++++    +.              .+.|+.+|..+++.....   ......
T Consensus       116 -g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~~p~  191 (305)
T 3dr2_A          116 -GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLDHPN  191 (305)
T ss_dssp             -SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EESSEE
T ss_pred             -CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCCCCc
Confidence             554332221     1223333  478888876    32              256888888776544332   334567


Q ss_pred             EEEecCCCCEEEEEeCC------CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCc
Q 009993          321 SLARSHTGDFLFTGGED------GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       321 ~l~~s~~~~~l~tg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~  393 (520)
                      .++|+|+++.|+.+...      +.|.+|++.... .........  ...+.+..+.+++ ..|.+++.+| |.+|+...
T Consensus       192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~--~~~~~pdgi~~d~~G~lwv~~~~g-v~~~~~~g  267 (305)
T 3dr2_A          192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFAS--VPDGLPDGFCVDRGGWLWSSSGTG-VCVFDSDG  267 (305)
T ss_dssp             EEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEEC--CSSSCCCSEEECTTSCEEECCSSE-EEEECTTS
T ss_pred             ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEE--CCCCCCCeEEECCCCCEEEecCCc-EEEECCCC
Confidence            89999999988777665      789999987653 111111111  1233456677765 2355555554 99998753

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.85  E-value=2.1e-06  Score=87.10  Aligned_cols=188  Identities=11%  Similarity=0.027  Sum_probs=119.7

Q ss_pred             CCEEEEEeC-CCeEEEEEC-CCCcEEEEeCCCCc-------------eEEEEecCCCE----EEEEeCCCcEEEEEcccC
Q 009993          154 AKLLFTSGY-DSIVRMWHL-EDGFSIASSKPLGC-------------TIRAVAADKKL----LVAGGTDGFIHCWRAVEV  214 (520)
Q Consensus       154 ~~~l~sgs~-dg~v~vwd~-~~~~~~~~~~~~~~-------------~v~~~~~~~~~----l~sg~~dg~i~vwd~~~~  214 (520)
                      +..|+.++. ++.|.-+|. .+|+.+..+.....             .-..+.+.+..    ++.++.|+.|..+|..+|
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            556777777 899999999 89999887754321             01133224444    888999999999999988


Q ss_pred             cceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEe------cCCeEEEEECCCCcEEEEeeeccC----------
Q 009993          215 LPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS------WDMTVRVWDRALLKCLKVLRHSDW----------  278 (520)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~~~~----------  278 (520)
                      +.. +..........   ......+    .+.++.++.++      .++.|+.+|.++++.+..+.....          
T Consensus       142 ~~~-W~~~~~~~~~~---~~~~ssP----~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~  213 (599)
T 1w6s_A          142 ETV-WKVENSDIKVG---STLTIAP----YVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDF  213 (599)
T ss_dssp             CEE-EEEECCCGGGT---CBCCSCC----EEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTT
T ss_pred             CEE-EeecCCCCCcc---ceeecCC----EEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccc
Confidence            632 11110000000   0001111    12345666665      389999999999999887762211          


Q ss_pred             -------------------------------EEEEeeCCCEEEEEc-C----------------CeEEEEECCCCeeeEE
Q 009993          279 -------------------------------VYGLAPHDTTVASTS-G----------------SDVYIWDTNSGCLLTV  310 (520)
Q Consensus       279 -------------------------------v~~~~~~~~~l~~~~-d----------------~~i~iwd~~~~~~~~~  310 (520)
                                                     ..++.+...+++.+. +                +.|..+|.++|+.+..
T Consensus       214 ~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~  293 (599)
T 1w6s_A          214 NIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFG  293 (599)
T ss_dssp             TTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEE
T ss_pred             ccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeE
Confidence                                           123445666777766 4                3799999999999888


Q ss_pred             eecccc---------cceEEEEec-CCC---CEEEEEeCCCeEEEEEcccCcc
Q 009993          311 VNGAHV---------GNTKSLARS-HTG---DFLFTGGEDGAIHMYEIINDCT  350 (520)
Q Consensus       311 ~~~~~~---------~~i~~l~~s-~~~---~~l~tg~~dg~i~iwd~~~~~~  350 (520)
                      +...+.         .++. +... .+|   ..++.++.+|.++++|..+++.
T Consensus       294 ~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  345 (599)
T 1w6s_A          294 YQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL  345 (599)
T ss_dssp             EESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             eecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCE
Confidence            764332         1122 2222 467   4677889999999999988854

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.84  E-value=1.8e-06  Score=76.42  Aligned_cols=178  Identities=12%  Similarity=0.097  Sum_probs=123.7

Q ss_pred             EEEEEEccCCCEEEEEeCCC--eEEEEECCCCcEEEEeCCCCc-eEEEEecCCCEEEEEe-CCCcEEEEEcccCcceeee
Q 009993          145 VLTVFVLASAKLLFTSGYDS--IVRMWHLEDGFSIASSKPLGC-TIRAVAADKKLLVAGG-TDGFIHCWRAVEVLPHLFD  220 (520)
Q Consensus       145 V~~l~~~~~~~~l~sgs~dg--~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~  220 (520)
                      ...+.|+ ++.++.+++.+|  .|+++|+.+++.+....-... .-..+.++++.|+... .++.+.++|..+..     
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~-----  118 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR-----  118 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCC-----
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCc-----
Confidence            4788898 677777777766  899999999999887753322 1233555566666655 47899999987763     


Q ss_pred             ccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeee---c---cCEEEEe-eCCCEEEEEc
Q 009993          221 ISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRH---S---DWVYGLA-PHDTTVASTS  293 (520)
Q Consensus       221 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---~---~~v~~~~-~~~~~l~~~~  293 (520)
                              ...++.-. ..=..++.+++.|+....++.|.++|..+.+.+..+.-   .   ..++.+. .++...+...
T Consensus       119 --------~~~ti~~~-~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w  189 (262)
T 3nol_A          119 --------QVRSFNYD-GEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVW  189 (262)
T ss_dssp             --------EEEEEECS-SCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEET
T ss_pred             --------EEEEEECC-CCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEc
Confidence                    22222211 12246667888887777788999999999999888762   1   2334455 4565554444


Q ss_pred             -CCeEEEEECCCCeeeEEeeccc-----------ccceEEEEecCCCCEEEEEeCC
Q 009993          294 -GSDVYIWDTNSGCLLTVVNGAH-----------VGNTKSLARSHTGDFLFTGGED  337 (520)
Q Consensus       294 -d~~i~iwd~~~~~~~~~~~~~~-----------~~~i~~l~~s~~~~~l~tg~~d  337 (520)
                       ++.|.+.|+++++.+..+....           ..-.+.++++|+++.|++.+..
T Consensus       190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence             7899999999999988886320           1356899999988877766553

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.82  E-value=1.9e-07  Score=88.77  Aligned_cols=223  Identities=9%  Similarity=-0.035  Sum_probs=140.0

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEe----------CCCeEEEEECCCCcEEEEeCC---------CCceEEEEecCCC
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSG----------YDSIVRMWHLEDGFSIASSKP---------LGCTIRAVAADKK  195 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs----------~dg~v~vwd~~~~~~~~~~~~---------~~~~v~~~~~~~~  195 (520)
                      +.++..-..+  .+.++||+++++.+.          .+++|.+||+.+++.+.++..         ....-..++|+|+
T Consensus        59 ~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk  136 (368)
T 1mda_H           59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA  136 (368)
T ss_dssp             EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS
T ss_pred             EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCC
Confidence            3444333345  799999999998886          378999999999999988742         2344568899999


Q ss_pred             EEEEEeC--CCcEEE--EEcccCcceeeeccC----------------CccccceEEecc------------------CC
Q 009993          196 LLVAGGT--DGFIHC--WRAVEVLPHLFDISG----------------SEKQNTQFRLWE------------------HE  237 (520)
Q Consensus       196 ~l~sg~~--dg~i~v--wd~~~~~~~~~~~~~----------------~~~~~~~~~~~~------------------h~  237 (520)
                      +++++..  +..|.+  +|..+ . ......+                .........+..                  ..
T Consensus       137 ~lyVan~~~~~~v~V~~iD~~t-v-~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~  214 (368)
T 1mda_H          137 CLLFFLFGSSAAAGLSVPGASD-D-QLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSS  214 (368)
T ss_dssp             CEEEEECSSSCEEEEEETTTEE-E-EEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCS
T ss_pred             EEEEEccCCCCeEEEEEEchhh-c-eEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCC
Confidence            9998875  467888  88865 1 1111100                000000000000                  01


Q ss_pred             CCeEEEEEcCCEEEEEecCCeEEEEECCCCc--EEEEee-------------eccCEEEEeeCCCEEEEEc--C------
Q 009993          238 GPITSLALDLTRIYSGSWDMTVRVWDRALLK--CLKVLR-------------HSDWVYGLAPHDTTVASTS--G------  294 (520)
Q Consensus       238 ~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~-------------~~~~v~~~~~~~~~l~~~~--d------  294 (520)
                      .+. . ..++..++..+. +.|.+.|..+..  .+..+.             .......+.++++.++++.  .      
T Consensus       215 ~P~-~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~  291 (368)
T 1mda_H          215 QAA-Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLA  291 (368)
T ss_dssp             CCE-E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTS
T ss_pred             Ccc-c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccc
Confidence            111 1 114455555555 888888886532  222221             1112246778888777643  2      


Q ss_pred             --CeEEEEECCCCeeeEEeecccccceEEEEecCCCC-EEEEEe-CCCeEEEEEcccCccccceeeeeeecCCcCCEEEE
Q 009993          295 --SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD-FLFTGG-EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL  370 (520)
Q Consensus       295 --~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l~tg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l  370 (520)
                        +.+.++|+.+++.+..+..+  .....++|+|+|+ .+++.. .++.|.++|+.+.      +.+.++..... ...+
T Consensus       292 ~~~~~~ViD~~t~~vv~~i~vg--~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~------kvv~~I~vg~~-P~~i  362 (368)
T 1mda_H          292 AAENTSSVTASVGQTSGPISNG--HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD------QDQSSVELDKG-PESL  362 (368)
T ss_dssp             CEEEEEEEESSSCCEEECCEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEESSSC------EEEEECCCCSC-CCEE
T ss_pred             cCCCEEEEECCCCeEEEEEECC--CCcceEEECCCCCEEEEEccCCCCeEEEEECCCC------cEEEEEECCCC-CCEE
Confidence              35779999999998888643  3688999999998 566666 5999999999999      66666654443 3455


Q ss_pred             Eec
Q 009993          371 AFE  373 (520)
Q Consensus       371 ~~~  373 (520)
                      ++.
T Consensus       363 ~~~  365 (368)
T 1mda_H          363 SVQ  365 (368)
T ss_dssp             ECC
T ss_pred             Eee
Confidence            543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.82  E-value=1.7e-06  Score=76.58  Aligned_cols=178  Identities=13%  Similarity=0.136  Sum_probs=122.2

Q ss_pred             cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEE-eCCCcEEEEEcccCcceeeecc
Q 009993          144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAG-GTDGFIHCWRAVEVLPHLFDIS  222 (520)
Q Consensus       144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~  222 (520)
                      -...+.|+ ++.+.++.+.+|.|+++|+++++.+..+.+....-..+.++++.|+.. -.++.+.++|..+..       
T Consensus        56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~-------  127 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQ-------  127 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTE-------
T ss_pred             ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCc-------
Confidence            34688887 466777888889999999999988777622221223355555555544 457899999987763       


Q ss_pred             CCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeee---c---cCEEEEe-eCCCEEEEEc-C
Q 009993          223 GSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRH---S---DWVYGLA-PHDTTVASTS-G  294 (520)
Q Consensus       223 ~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---~---~~v~~~~-~~~~~l~~~~-d  294 (520)
                            ...++.. ...-..++.+++.|+.+..++.|.++|..+.+.+..+.-   .   ..++.+. .++.+++... +
T Consensus       128 ------~~~ti~~-~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s  200 (268)
T 3nok_A          128 ------RERTTRY-SGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHS  200 (268)
T ss_dssp             ------EEEEEEC-SSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTC
T ss_pred             ------EEEEEeC-CCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCC
Confidence                  2222221 222356778898888888889999999999999888862   1   2345555 4665554444 7


Q ss_pred             CeEEEEECCCCeeeEEeecc------------cccceEEEEecCCCCEEEEEeC
Q 009993          295 SDVYIWDTNSGCLLTVVNGA------------HVGNTKSLARSHTGDFLFTGGE  336 (520)
Q Consensus       295 ~~i~iwd~~~~~~~~~~~~~------------~~~~i~~l~~s~~~~~l~tg~~  336 (520)
                      +.|.+.|+++++.+..+..+            ...-.+.++++|+++.|++.+.
T Consensus       201 ~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          201 SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            89999999999998888632            1135689999997665554433

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.79  E-value=1e-05  Score=76.02  Aligned_cols=182  Identities=12%  Similarity=-0.012  Sum_probs=112.7

Q ss_pred             EEecC-CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECC
Q 009993          189 AVAAD-KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRA  265 (520)
Q Consensus       189 ~~~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~  265 (520)
                      .++++ +.++++...++.|..||..++..              ..+ .....+.++.+  ++++++ ++.+ .|.+||..
T Consensus        55 ~~~~~~~~l~~~d~~~~~i~~~d~~~~~~--------------~~~-~~~~~v~~i~~~~dg~l~v-~~~~-gl~~~d~~  117 (326)
T 2ghs_A           55 TFDPASGTAWWFNILERELHELHLASGRK--------------TVH-ALPFMGSALAKISDSKQLI-ASDD-GLFLRDTA  117 (326)
T ss_dssp             EEETTTTEEEEEEGGGTEEEEEETTTTEE--------------EEE-ECSSCEEEEEEEETTEEEE-EETT-EEEEEETT
T ss_pred             eEeCCCCEEEEEECCCCEEEEEECCCCcE--------------EEE-ECCCcceEEEEeCCCeEEE-EECC-CEEEEECC
Confidence            45665 44666666788999999876531              111 12457888888  444444 4544 59999998


Q ss_pred             CCcEEEEeee-----ccCEEEEe--eCCCEEEEEcC-------CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEE
Q 009993          266 LLKCLKVLRH-----SDWVYGLA--PHDTTVASTSG-------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFL  331 (520)
Q Consensus       266 ~~~~~~~~~~-----~~~v~~~~--~~~~~l~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l  331 (520)
                      +++.......     ...+..+.  ++++++++..+       +.|..+|  +++... +. .+......++|+|+++.+
T Consensus       118 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~-~~~~~~~~i~~s~dg~~l  193 (326)
T 2ghs_A          118 TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LF-ADISIPNSICFSPDGTTG  193 (326)
T ss_dssp             TCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EE-EEESSEEEEEECTTSCEE
T ss_pred             CCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-ee-CCCcccCCeEEcCCCCEE
Confidence            8876443321     12456655  77887766542       4577777  454433 22 234457789999999876


Q ss_pred             EEE-eCCCeEEEEEcc--cC-ccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCC
Q 009993          332 FTG-GEDGAIHMYEII--ND-CTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       332 ~tg-~~dg~i~iwd~~--~~-~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~  392 (520)
                      +.+ +.++.|.+||+.  ++ .. ........+......+..+.+++  .+.++...++.|.+||..
T Consensus       194 yv~~~~~~~I~~~d~~~~~Gl~~-~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~  259 (326)
T 2ghs_A          194 YFVDTKVNRLMRVPLDARTGLPT-GKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD  259 (326)
T ss_dssp             EEEETTTCEEEEEEBCTTTCCBS-SCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred             EEEECCCCEEEEEEcccccCCcc-cCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence            554 557899999986  33 21 11122233333445677888865  455555567889999874

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.78  E-value=1.5e-07  Score=89.53  Aligned_cols=227  Identities=9%  Similarity=0.039  Sum_probs=131.6

Q ss_pred             ccEEEEEEccCCCEEEEEe--CCCeEEEEECCCCcEEEEeC-------CCCceEEEEe--cCCCEEEEEeC-----CCcE
Q 009993          143 EAVLTVFVLASAKLLFTSG--YDSIVRMWHLEDGFSIASSK-------PLGCTIRAVA--ADKKLLVAGGT-----DGFI  206 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~sgs--~dg~v~vwd~~~~~~~~~~~-------~~~~~v~~~~--~~~~~l~sg~~-----dg~i  206 (520)
                      ..+..++++++|+++++..  .++.++||.+.+++. ..+.       .+-..+..+.  ++++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            6789999999999988864  234366666655543 3332       2233455554  66665555433     5789


Q ss_pred             EEEEcccCcc-eeeeccCCccccceEEeccCCCCeEEEEEc--CCEE-EEEe---cCCeEEEEECCCCcEEEEee-eccC
Q 009993          207 HCWRAVEVLP-HLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRI-YSGS---WDMTVRVWDRALLKCLKVLR-HSDW  278 (520)
Q Consensus       207 ~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l-~s~s---~dg~v~iwd~~~~~~~~~~~-~~~~  278 (520)
                      .+||+.++.. ..+.+...        ...+...+..++++  +..+ ++.+   .++.|.+||..+++....+. |...
T Consensus        96 ~~~d~~tg~~~~~~~~~~~--------~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~  167 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPP--------ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGI  167 (343)
T ss_dssp             EEEETTTTEEEEEEECCTT--------TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTT
T ss_pred             EEEECCCCeEEEEEECChh--------hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcc
Confidence            9999887641 11111100        00223456788885  3455 4444   67899999999888766653 2111


Q ss_pred             E---EEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCC-eEEEEEcccCcc--c
Q 009993          279 V---YGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG-AIHMYEIINDCT--E  351 (520)
Q Consensus       279 v---~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg-~i~iwd~~~~~~--~  351 (520)
                      .   ..+..++..+.+.. ++.+..|.               ..+..++++|+++.|+.+..++ .+..++......  .
T Consensus       168 ~~~~~~~~~~g~~~~~~~~~g~~~~~~---------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~  232 (343)
T 2qe8_A          168 APEDIDLVIDGVPVQIGQPDGTVIRPH---------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQL  232 (343)
T ss_dssp             SCCSCCCEETTEECBEECTTSCEECCC---------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTC
T ss_pred             cccccceeECCEEEEeccCCCceecee---------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCC
Confidence            0   22334565555555 56554442               2357899999999888887766 455554321100  0


Q ss_pred             cceeeee--eecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993          352 ANVLLVA--TWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       352 ~~~~~~~--~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  393 (520)
                      .......  ...++.+....+++++  .++++...++.|.+||..+
T Consensus       233 ~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~  278 (343)
T 2qe8_A          233 TDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSAD  278 (343)
T ss_dssp             CHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTT
T ss_pred             ChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCC
Confidence            0000000  1113334556778865  6777777889999999833

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.78  E-value=2.6e-06  Score=76.44  Aligned_cols=188  Identities=15%  Similarity=0.076  Sum_probs=129.3

Q ss_pred             EEEecCCCEEEEEeC--CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEe-cCCeEEEEEC
Q 009993          188 RAVAADKKLLVAGGT--DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS-WDMTVRVWDR  264 (520)
Q Consensus       188 ~~~~~~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s-~dg~v~iwd~  264 (520)
                      ..+++++.+.++.+.  ++.|.++|..++...           ....+.. ......++++++.|+.+. .++.+.++|.
T Consensus        26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~-----------~~i~l~~-~~fgeGi~~~g~~lyv~t~~~~~v~viD~   93 (266)
T 2iwa_A           26 LVYAENDTLFESTGLYGRSSVRQVALQTGKVE-----------NIHKMDD-SYFGEGLTLLNEKLYQVVWLKNIGFIYDR   93 (266)
T ss_dssp             EEECSTTEEEEEECSTTTCEEEEEETTTCCEE-----------EEEECCT-TCCEEEEEEETTEEEEEETTCSEEEEEET
T ss_pred             EEEeCCCeEEEECCCCCCCEEEEEECCCCCEE-----------EEEecCC-CcceEEEEEeCCEEEEEEecCCEEEEEEC
Confidence            345566544444433  579999999887421           1111112 223345777777766655 5789999999


Q ss_pred             CCCcEEEEeeec-cCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccc----cceEEEEecCCCCEEEEEeCCC
Q 009993          265 ALLKCLKVLRHS-DWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHV----GNTKSLARSHTGDFLFTGGEDG  338 (520)
Q Consensus       265 ~~~~~~~~~~~~-~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~----~~i~~l~~s~~~~~l~tg~~dg  338 (520)
                      .+.+.+.++... ..-..+.++++.++++. ++.|.++|..+.+.+..+.-+..    ..++.+.|. +|...+....++
T Consensus        94 ~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~  172 (266)
T 2iwa_A           94 RTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTD  172 (266)
T ss_dssp             TTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSS
T ss_pred             CCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCC
Confidence            999999998754 44456888888777777 78999999999988888764321    236788887 675555555688


Q ss_pred             eEEEEEcccCccccceeeeeeecC-------------CcCCEEEEEecC---CEEEEEeCCCcEEEEeCCcc
Q 009993          339 AIHMYEIINDCTEANVLLVATWIP-------------HTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       339 ~i~iwd~~~~~~~~~~~~~~~~~~-------------h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~  394 (520)
                      .|.+.|..++.      .+..+.-             .....+.|+|++   ..++++...+.|.+.++...
T Consensus       173 ~V~vID~~tg~------V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          173 CIARISAKDGT------LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEEEETTTCC------EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             eEEEEECCCCc------EEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            99999999984      3333321             113668999986   36777778899999998763

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.74  E-value=7.2e-06  Score=83.32  Aligned_cols=189  Identities=10%  Similarity=-0.048  Sum_probs=114.4

Q ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCce---------EEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCC
Q 009993          154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT---------IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGS  224 (520)
Q Consensus       154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~  224 (520)
                      +..++.++.++.|.-+|..+|+.+.++......         .......+..++.++.|+.|..+|..+|+..- .....
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W-~~~~~  146 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVW-KKKFA  146 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEE-EEECS
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEe-eecCC
Confidence            445666666445999999999998777533210         01112346778889999999999999886421 11100


Q ss_pred             ccccceEEeccCCCCeEEEEEcC----C-EEEEEec------CCeEEEEECCCCcEEEEeeeccC---------------
Q 009993          225 EKQNTQFRLWEHEGPITSLALDL----T-RIYSGSW------DMTVRVWDRALLKCLKVLRHSDW---------------  278 (520)
Q Consensus       225 ~~~~~~~~~~~h~~~v~~l~~~~----~-~l~s~s~------dg~v~iwd~~~~~~~~~~~~~~~---------------  278 (520)
                      .....   ......++   ..++    + .+++++.      ++.|..+|..+++.+........               
T Consensus       147 ~~~~~---~~~~~sP~---v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~  220 (582)
T 1flg_A          147 DHGAG---YTMTGAPT---IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGD  220 (582)
T ss_dssp             CGGGT---CBCCSCCE---EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSC
T ss_pred             CCCcC---cccccCCE---EeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccc
Confidence            00000   00011121   1222    2 6666653      78999999999998876542110               


Q ss_pred             -----------------------------EEEEeeCCCEEEEEc---------------------C----CeEEEEECCC
Q 009993          279 -----------------------------VYGLAPHDTTVASTS---------------------G----SDVYIWDTNS  304 (520)
Q Consensus       279 -----------------------------v~~~~~~~~~l~~~~---------------------d----~~i~iwd~~~  304 (520)
                                                   ..++.+...+++.+.                     |    +.|..+|.++
T Consensus       221 ~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T  300 (582)
T 1flg_A          221 VKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS  300 (582)
T ss_dssp             TTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT
T ss_pred             cccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCC
Confidence                                         012334556666544                     1    5799999999


Q ss_pred             CeeeEEeecc-cc--------cceEEEEec-CCCC---EEEEEeCCCeEEEEEcccCcc
Q 009993          305 GCLLTVVNGA-HV--------GNTKSLARS-HTGD---FLFTGGEDGAIHMYEIINDCT  350 (520)
Q Consensus       305 ~~~~~~~~~~-~~--------~~i~~l~~s-~~~~---~l~tg~~dg~i~iwd~~~~~~  350 (520)
                      |+.+..+... |.        .++. +... .+|+   .++.++.+|.++++|..+++.
T Consensus       301 G~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  358 (582)
T 1flg_A          301 GEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKL  358 (582)
T ss_dssp             CCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             CCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCE
Confidence            9999887643 21        1221 2222 4674   788899999999999988853

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.73  E-value=1.1e-05  Score=70.87  Aligned_cols=179  Identities=18%  Similarity=0.133  Sum_probs=121.8

Q ss_pred             ccEEEEEEccCCCEEEEEeCC--CeEEEEECCCCcEEEEeCCCCc-eEEEEecCCCEEEE-EeCCCcEEEEEcccCccee
Q 009993          143 EAVLTVFVLASAKLLFTSGYD--SIVRMWHLEDGFSIASSKPLGC-TIRAVAADKKLLVA-GGTDGFIHCWRAVEVLPHL  218 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~sgs~d--g~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~l~s-g~~dg~i~vwd~~~~~~~~  218 (520)
                      .-...+.|++ +.++.+.+.+  ..|+++|+.+++.+....-... .-..+...++.|+. .-.++.+.++|..+..   
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~---   96 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLT---   96 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTE---
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCc---
Confidence            3466888985 5666666665  4899999999999887753221 11234444555554 4467899999987753   


Q ss_pred             eeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEeeec------cCEEEEe-eCCCEEEE
Q 009993          219 FDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHS------DWVYGLA-PHDTTVAS  291 (520)
Q Consensus       219 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~------~~v~~~~-~~~~~l~~  291 (520)
                                ...++... ..=..++.++..|+.+..++.|.++|..+.+.+..+.-.      ..++.+. .+++.++.
T Consensus        97 ----------~~~ti~~~-~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyan  165 (243)
T 3mbr_X           97 ----------PRARFRYP-GEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLAN  165 (243)
T ss_dssp             ----------EEEEEECS-SCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred             ----------EEEEEeCC-CCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEE
Confidence                      22222221 222567788877777777899999999999998888621      3455566 45555544


Q ss_pred             Ec-CCeEEEEECCCCeeeEEeecc------------cccceEEEEecCCCCEEEEEeC
Q 009993          292 TS-GSDVYIWDTNSGCLLTVVNGA------------HVGNTKSLARSHTGDFLFTGGE  336 (520)
Q Consensus       292 ~~-d~~i~iwd~~~~~~~~~~~~~------------~~~~i~~l~~s~~~~~l~tg~~  336 (520)
                      .- +..|.+.|+++++.+..+..+            ...-.+.++++|+++.|++.+.
T Consensus       166 vw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          166 VWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             ETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             ECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            44 789999999999998887632            1235689999998776665554

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.70  E-value=5.7e-07  Score=85.42  Aligned_cols=248  Identities=8%  Similarity=0.009  Sum_probs=146.2

Q ss_pred             eEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEe----------CCCcEEEEEcccCcceeeeccCCccccceEEec
Q 009993          165 IVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGG----------TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW  234 (520)
Q Consensus       165 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                      +|.+.|..+++.+.++.....+-..++|+++.++++.          .++.|.+||..++..             ...+.
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-------------v~~I~  113 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-------------IADIE  113 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-------------EEEEE
T ss_pred             eEEEEECCCCeEEEEEeCCCCCceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-------------EEEEE
Confidence            8889999999999988643334577889999998886          368899999988642             22221


Q ss_pred             cC-------CCCeEEEEE--cCCEEEEEec--CCeEEE--EECCCCcEEEEeeeccCEEEEeeCCC-EEEEEc-CCeEEE
Q 009993          235 EH-------EGPITSLAL--DLTRIYSGSW--DMTVRV--WDRALLKCLKVLRHSDWVYGLAPHDT-TVASTS-GSDVYI  299 (520)
Q Consensus       235 ~h-------~~~v~~l~~--~~~~l~s~s~--dg~v~i--wd~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~-d~~i~i  299 (520)
                      -+       ......+.+  |+++++++..  +..|.+  +|..+   +..+..... ..+.+++. .+++.+ |+.+.+
T Consensus       114 v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~-~~~~p~g~~~~~~~~~dg~~~~  189 (368)
T 1mda_H          114 LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC-FHIHPGAAATHYLGSCPASLAA  189 (368)
T ss_dssp             ETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC-CCCEEEETTEEECCCCTTSCEE
T ss_pred             CCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc-eEEccCCCeEEEEEcCCCCEEE
Confidence            11       012334566  7888888864  467888  99877   444542222 12334433 333444 888888


Q ss_pred             EECCC-----CeeeE----EeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecC-------C
Q 009993          300 WDTNS-----GCLLT----VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP-------H  363 (520)
Q Consensus       300 wd~~~-----~~~~~----~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------h  363 (520)
                      .|+.+     ++...    .+.. ...+.   . .+++..++..+. +.+.+.|+.....    ..+..+.-       +
T Consensus       190 vd~~~~~~~~~~v~~~~t~~i~v-g~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~----~v~~~~~~~~~~~~~~  259 (368)
T 1mda_H          190 SDLAAAPAAAGIVGAQCTGAQNC-SSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGA----TMKAAIDGNESGRKAD  259 (368)
T ss_dssp             EECCSSCCCCEECCCCSCTTSCB-CSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCC----EEECCCCSSCTHHHHT
T ss_pred             EECccccccCCeEEEEeeeeeeC-CCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcc----eEEEEEEecccccccc
Confidence            99887     44321    1111 12233   3 566666666666 9999999865421    11111110       0


Q ss_pred             ---cCCEEEEEecC--CEEEEEeC---------CCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEE
Q 009993          364 ---TGPVNSLAFEF--PWLVSAAG---------DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSV  429 (520)
Q Consensus       364 ---~~~v~~l~~~~--~~l~s~s~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  429 (520)
                         ......+.+++  ++++.+..         ++.+.++|+.+......                  +.-+....-..+
T Consensus       260 ~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~------------------i~vg~~p~gi~~  321 (368)
T 1mda_H          260 NFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP------------------ISNGHDSDAIIA  321 (368)
T ss_dssp             TEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC------------------CEEEEEECEEEE
T ss_pred             ccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEE------------------EECCCCcceEEE
Confidence               01111145644  55655432         23566999988532211                  111222344566


Q ss_pred             EecCC-EEEEec-CCCeEEEEeCCchHhHH
Q 009993          430 DIGAD-RIVCGG-EEGIVRIWNFSQAFEIE  457 (520)
Q Consensus       430 ~~~~~-~l~sg~-~Dg~v~iwd~~~~~~~~  457 (520)
                      +++++ .+++.. .++.|.++|+.+.+.++
T Consensus       322 s~Dg~~l~va~~~~~~~VsVID~~t~kvv~  351 (368)
T 1mda_H          322 AQDGASDNYANSAGTEVLDIYDAASDQDQS  351 (368)
T ss_dssp             CCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred             CCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence            67776 667776 59999999999876543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.70  E-value=4.1e-09  Score=93.39  Aligned_cols=50  Identities=24%  Similarity=0.369  Sum_probs=45.9

Q ss_pred             cccCCCHHHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhhhhhhhc
Q 009993           63 TITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERW  112 (520)
Q Consensus        63 ~~~~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~~~~~~~  112 (520)
                      ++..||.|++++||+||+|++|+++++|||+|+.+++|+.||+.++.+.+
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~   53 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDL   53 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSG
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccC
Confidence            47789999999999999999999999999999999999999998766543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.66  E-value=2.3e-06  Score=89.52  Aligned_cols=185  Identities=15%  Similarity=0.153  Sum_probs=110.8

Q ss_pred             EEecCCCEEEEE-----eCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCC-----
Q 009993          189 AVAADKKLLVAG-----GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDM-----  257 (520)
Q Consensus       189 ~~~~~~~~l~sg-----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg-----  257 (520)
                      +++|||++|+-+     +....|++||+.++...            ...+.+..  ...++| |++.|+.++.+.     
T Consensus       135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~------------~~~~~~~k--~~~~~WsDg~~l~y~~~~~~~~~~  200 (693)
T 3iuj_A          135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQPL------------ETPLKDVK--FSGISWLGNEGFFYSSYDKPDGSE  200 (693)
T ss_dssp             EECTTSSEEEEEEECSSCCEEEEEEEETTTCSEE------------EEEEEEEE--SCCCEEETTTEEEEEESSCCC---
T ss_pred             EECCCCCEEEEEEecCCCceEEEEEEECCCCCCC------------ccccCCce--eccEEEeCCCEEEEEEecCccccc
Confidence            567999988843     33357999999887421            11121111  123344 888888888774     


Q ss_pred             --------eEEEEECCCCcE--EEEeee----ccCEEEE--eeCCCEEEEEc--C---CeEEEEECCCCe-eeEEeeccc
Q 009993          258 --------TVRVWDRALLKC--LKVLRH----SDWVYGL--APHDTTVASTS--G---SDVYIWDTNSGC-LLTVVNGAH  315 (520)
Q Consensus       258 --------~v~iwd~~~~~~--~~~~~~----~~~v~~~--~~~~~~l~~~~--d---~~i~iwd~~~~~-~~~~~~~~~  315 (520)
                              .|++|++.+...  ...+..    .....++  ++++++++...  +   +.|+++|+.++. ....+. .+
T Consensus       201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~-~~  279 (693)
T 3iuj_A          201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ-GD  279 (693)
T ss_dssp             ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE-CS
T ss_pred             ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe-CC
Confidence                    399999987643  223332    2234444  48999876544  2   479999998763 334443 34


Q ss_pred             ccceEEEEecCCCCEEE-EEeCC---CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeC-CC--cEEE
Q 009993          316 VGNTKSLARSHTGDFLF-TGGED---GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAG-DG--KLSL  388 (520)
Q Consensus       316 ~~~i~~l~~s~~~~~l~-tg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~-dg--~i~v  388 (520)
                      ....... ++++|+.|+ ....+   +.|..+|+.++..    .....+..|...+..+..++++|+.... ++  .|++
T Consensus       280 ~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~----~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~  354 (693)
T 3iuj_A          280 LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP----AHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQ  354 (693)
T ss_dssp             SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG----GGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc----cccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEE
Confidence            4444444 566666555 44333   6799999887632    1123444555444455556677766654 44  6888


Q ss_pred             EeCCc
Q 009993          389 IDVRK  393 (520)
Q Consensus       389 wd~~~  393 (520)
                      ||+..
T Consensus       355 ~d~~g  359 (693)
T 3iuj_A          355 FDYEG  359 (693)
T ss_dssp             ECTTS
T ss_pred             EECCC
Confidence            98864

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.64  E-value=8.6e-06  Score=72.14  Aligned_cols=175  Identities=11%  Similarity=0.015  Sum_probs=115.6

Q ss_pred             CCCEEEEEeCCC--cEEEEEcccCcceeeeccCCccccceEEeccC-CCCeEEEEEcCCEEEEEe-cCCeEEEEECCCCc
Q 009993          193 DKKLLVAGGTDG--FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH-EGPITSLALDLTRIYSGS-WDMTVRVWDRALLK  268 (520)
Q Consensus       193 ~~~~l~sg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~l~s~s-~dg~v~iwd~~~~~  268 (520)
                      ++.++.+.+.+|  .|+++|+.+++.             .....-. .---..++++++.|+... .++.+.++|..+.+
T Consensus        52 ~~~LyestG~~g~S~v~~vD~~Tgkv-------------~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~  118 (262)
T 3nol_A           52 NGYFYESTGLNGRSSIRKVDIESGKT-------------LQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR  118 (262)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTTCCE-------------EEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCC
T ss_pred             CCEEEEECCCCCCceEEEEECCCCcE-------------EEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCc
Confidence            555566666666  899999988742             1111111 112234667777766665 47899999999999


Q ss_pred             EEEEeeeccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeeccc---c-cceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993          269 CLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAH---V-GNTKSLARSHTGDFLFTGGEDGAIHMY  343 (520)
Q Consensus       269 ~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~---~-~~i~~l~~s~~~~~l~tg~~dg~i~iw  343 (520)
                      .+.++.....-..+++++..++.+. ++.|.++|..+.+.+..+.-+.   . ..++.+.+. +|...+....++.|.+.
T Consensus       119 ~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vI  197 (262)
T 3nol_A          119 QVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRI  197 (262)
T ss_dssp             EEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             EEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEE
Confidence            9999985554456778888777777 7889999999998888776321   1 345567776 67666666578899999


Q ss_pred             EcccCccccceeeeeeec-------CCcCCEEEEEecC--CEEEEEeC
Q 009993          344 EIINDCTEANVLLVATWI-------PHTGPVNSLAFEF--PWLVSAAG  382 (520)
Q Consensus       344 d~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~~--~~l~s~s~  382 (520)
                      |..++.....+..- .+.       .-....+.|+|+|  +.|+..+.
T Consensus       198 Dp~tG~V~~~Id~~-~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          198 DPETGKVTGIIDLN-GILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             CTTTCBEEEEEECT-TGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             ECCCCcEEEEEECC-cCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            99998432221110 010       1124679999987  45544443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.59  E-value=0.00019  Score=76.28  Aligned_cols=240  Identities=8%  Similarity=0.032  Sum_probs=146.3

Q ss_pred             cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC-------CCceEEEEecC-CCEEEEEeCCCcEEEEEccc
Q 009993          142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP-------LGCTIRAVAAD-KKLLVAGGTDGFIHCWRAVE  213 (520)
Q Consensus       142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-------~~~~v~~~~~~-~~~l~sg~~dg~i~vwd~~~  213 (520)
                      ...|.++...+++.+.+ |+.++-+..||..+++.......       ....|.++..+ ...|..|+.+ -|.+||..+
T Consensus       214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~  291 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGT  291 (795)
T ss_dssp             CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTT
T ss_pred             CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCC
Confidence            46788888887776544 55444488999877654432221       13567777633 3456666666 588888766


Q ss_pred             CcceeeeccCCccccceEEeccCCCCeEEEEEc-CCEEEEEecCCeEEEEECCCCcEEEEee-------eccCEEEEee-
Q 009993          214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALD-LTRIYSGSWDMTVRVWDRALLKCLKVLR-------HSDWVYGLAP-  284 (520)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~-------~~~~v~~~~~-  284 (520)
                      +....+.......      ..-....|.++..| ...|..|+.++-|..|+..+........       ....|.++.. 
T Consensus       292 ~~~~~~~~~~~~~------~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d  365 (795)
T 4a2l_A          292 DSFASYSSNPVEN------GSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED  365 (795)
T ss_dssp             TEEEEECCCTTST------TSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC
T ss_pred             CeEEEEecCCCCC------CCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC
Confidence            5322111100000      00134678999884 3567788887889999876554322111       2456888873 


Q ss_pred             -CCCEEEEEcCCeEEEEECCCCeeeEEeec-------ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceee
Q 009993          285 -HDTTVASTSGSDVYIWDTNSGCLLTVVNG-------AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL  356 (520)
Q Consensus       285 -~~~~l~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~  356 (520)
                       ++.+.+...++.|..||..++........       -....|.+++..+++..|..|+.++-|.+||..++..    ..
T Consensus       366 ~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~----~~  441 (795)
T 4a2l_A          366 KDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV----EN  441 (795)
T ss_dssp             TTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE----EE
T ss_pred             CCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE----EE
Confidence             45554444477899999987754433211       1235789999988888567788877799999877621    11


Q ss_pred             eeee--cCCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcc
Q 009993          357 VATW--IPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       357 ~~~~--~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~  394 (520)
                      ....  ......|.++..++ ..|..|+.+ -|.+||..+.
T Consensus       442 ~~~~~~~l~~~~v~~i~~d~~g~lwigt~~-Gl~~~~~~~~  481 (795)
T 4a2l_A          442 FNQRNSQLVNENVYAILPDGEGNLWLGTLS-ALVRFNPEQR  481 (795)
T ss_dssp             ECTTTSCCSCSCEEEEEECSSSCEEEEESS-CEEEEETTTT
T ss_pred             eecCCCCcCCCeeEEEEECCCCCEEEEecC-ceeEEeCCCC
Confidence            1000  02345789998875 456666664 5888998753

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.58  E-value=1.3e-05  Score=83.06  Aligned_cols=237  Identities=13%  Similarity=0.101  Sum_probs=143.7

Q ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeCCCC----ceEEE-EecCCCEEEEEeC------CCcEEEEEcccCcceeeecc
Q 009993          154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLG----CTIRA-VAADKKLLVAGGT------DGFIHCWRAVEVLPHLFDIS  222 (520)
Q Consensus       154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~----~~v~~-~~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~  222 (520)
                      +..++.++.|+.|..+|..+|+.+..+....    ..+.+ -...+..++++..      +|.|..+|..+|+.. +...
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~-W~~~  195 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLA-WRFY  195 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE-EEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEE-EEec
Confidence            5678888999999999999999987765421    01100 0012345555543      589999999988642 2111


Q ss_pred             C--Cccccc-----------------eEEeccCCCCeEEEEE--cCCEEEEEecCC-------------------eEEEE
Q 009993          223 G--SEKQNT-----------------QFRLWEHEGPITSLAL--DLTRIYSGSWDM-------------------TVRVW  262 (520)
Q Consensus       223 ~--~~~~~~-----------------~~~~~~h~~~v~~l~~--~~~~l~s~s~dg-------------------~v~iw  262 (520)
                      .  ......                 .....++......+++  +.+.++.++.++                   .|..+
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            0  000000                 0000011111223556  457888887766                   49999


Q ss_pred             ECCCCcEEEEeee---c-------cCEE--EEeeCCC---EEEEEc-CCeEEEEECCCCeeeEEeecccc----------
Q 009993          263 DRALLKCLKVLRH---S-------DWVY--GLAPHDT---TVASTS-GSDVYIWDTNSGCLLTVVNGAHV----------  316 (520)
Q Consensus       263 d~~~~~~~~~~~~---~-------~~v~--~~~~~~~---~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~----------  316 (520)
                      |.++++.+..+..   .       .+..  .+..+++   .++.++ +|.++++|..+|+.+........          
T Consensus       276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~  355 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT  355 (668)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred             cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence            9999999888762   1       2222  2335665   567777 89999999999998854432110          


Q ss_pred             -cce------------------------EEEEecCCCCEEEEEe------------------------------------
Q 009993          317 -GNT------------------------KSLARSHTGDFLFTGG------------------------------------  335 (520)
Q Consensus       317 -~~i------------------------~~l~~s~~~~~l~tg~------------------------------------  335 (520)
                       .++                        ..++++|+..++++..                                    
T Consensus       356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~  435 (668)
T 1kv9_A          356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV  435 (668)
T ss_dssp             CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred             CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence             000                        1257777777665421                                    


Q ss_pred             CCCeEEEEEcccCccccceeeeeeecCCcCC-EEEEEecCCEEEEEeCCCcEEEEeCCccccc
Q 009993          336 EDGAIHMYEIINDCTEANVLLVATWIPHTGP-VNSLAFEFPWLVSAAGDGKLSLIDVRKLLRS  397 (520)
Q Consensus       336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~  397 (520)
                      .+|.|..||+.++      +.+.....+... -..+...+.+++.++.||.|++||.+++...
T Consensus       436 ~~g~l~A~D~~tG------~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l  492 (668)
T 1kv9_A          436 VSGALLAWDPVKQ------KAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (668)
T ss_dssp             CEEEEEEEETTTT------EEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccceEEEEeCCCC------cEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence            2478999999998      444333322211 1234556789999999999999999986433

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.57  E-value=7.8e-06  Score=77.49  Aligned_cols=204  Identities=8%  Similarity=0.003  Sum_probs=122.0

Q ss_pred             ccccccEEEEEEccCCCEEEEEeC-----CCeEEEEECCCCcEEEEeCCC------Cc--eEEEEecCCCEE-EEEe---
Q 009993          139 YGHTEAVLTVFVLASAKLLFTSGY-----DSIVRMWHLEDGFSIASSKPL------GC--TIRAVAADKKLL-VAGG---  201 (520)
Q Consensus       139 ~~h~~~V~~l~~~~~~~~l~sgs~-----dg~v~vwd~~~~~~~~~~~~~------~~--~v~~~~~~~~~l-~sg~---  201 (520)
                      .+|-..+.+++++++++++++-..     ++.|.+||+.+++.+..+...      ..  .-..+.+++..+ ++..   
T Consensus        63 ~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~  142 (343)
T 2qe8_A           63 IITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD  142 (343)
T ss_dssp             CCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG
T ss_pred             ccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC
Confidence            356778999999999887666543     578999999999877665321      11  233556554444 5544   


Q ss_pred             CCCcEEEEEcccCcceeeeccC--C-ccccceEEecc--------------CCCCeEEEEE--cCCEEEEEecCC-eEEE
Q 009993          202 TDGFIHCWRAVEVLPHLFDISG--S-EKQNTQFRLWE--------------HEGPITSLAL--DLTRIYSGSWDM-TVRV  261 (520)
Q Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~--~-~~~~~~~~~~~--------------h~~~v~~l~~--~~~~l~s~s~dg-~v~i  261 (520)
                      .++.|.+||..++...... ..  . ..........+              ....+..|++  +++.|+.+..++ .+..
T Consensus       143 ~~~~i~v~d~~~g~~~r~~-~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~  221 (343)
T 2qe8_A          143 DKAALIRVDLQTGLAARVL-QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYR  221 (343)
T ss_dssp             GGCEEEEEETTTCCEEEEC-TTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEE
T ss_pred             CCCeEEEEECCCCCEEEEe-cCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEE
Confidence            5789999999876432211 10  0 00000000100              1134678888  667888877666 4544


Q ss_pred             EECC---CCc--------EEEEeeeccCE--EEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCC
Q 009993          262 WDRA---LLK--------CLKVLRHSDWV--YGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT  327 (520)
Q Consensus       262 wd~~---~~~--------~~~~~~~~~~v--~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~  327 (520)
                      ++..   .+.        .+....+....  .++.++++++++.. ++.|.+||..+++........+...+.+++|.++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~  301 (343)
T 2qe8_A          222 IKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSD  301 (343)
T ss_dssp             EEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTT
T ss_pred             EEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCC
Confidence            4431   110        01112222222  35557888888887 7999999996676443333223556899999999


Q ss_pred             CCEEEEEeCCCeEEEE
Q 009993          328 GDFLFTGGEDGAIHMY  343 (520)
Q Consensus       328 ~~~l~tg~~dg~i~iw  343 (520)
                      +.++++.+..+.+.+|
T Consensus       302 g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          302 GYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             SCEEEEECCGGGSGGG
T ss_pred             CcEEEEeCcccccccc
Confidence            9888887765544433

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.56  E-value=1.1e-05  Score=71.35  Aligned_cols=180  Identities=12%  Similarity=0.044  Sum_probs=118.4

Q ss_pred             EEEec-CCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEE-ecCCeEEEEECC
Q 009993          188 RAVAA-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSG-SWDMTVRVWDRA  265 (520)
Q Consensus       188 ~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~-s~dg~v~iwd~~  265 (520)
                      ..+.. ++.+.++.+.+|.|+++|+.+++..           ... +.. ...-..++++++.|+.. -.++.+.+||..
T Consensus        58 qGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~-----------~~~-l~~-~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~  124 (268)
T 3nok_A           58 QGLVFHQGHFFESTGHQGTLRQLSLESAQPV-----------WME-RLG-NIFAEGLASDGERLYQLTWTEGLLFTWSGM  124 (268)
T ss_dssp             EEEEEETTEEEEEETTTTEEEECCSSCSSCS-----------EEE-ECT-TCCEEEEEECSSCEEEEESSSCEEEEEETT
T ss_pred             ceEEEECCEEEEEcCCCCEEEEEECCCCcEE-----------eEE-CCC-CcceeEEEEeCCEEEEEEccCCEEEEEECC
Confidence            44443 3455666777889999999887521           111 221 11223467766555544 457899999999


Q ss_pred             CCcEEEEeeeccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeeccc-c---cceEEEEecCCCCEEEEEeCCCeE
Q 009993          266 LLKCLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAH-V---GNTKSLARSHTGDFLFTGGEDGAI  340 (520)
Q Consensus       266 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~-~---~~i~~l~~s~~~~~l~tg~~dg~i  340 (520)
                      +.+.+.++.....-..++++++.|+.+. ++.|.++|..+.+.+..+.-+. .   ..++.+.|. +|...+....+..|
T Consensus       125 Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I  203 (268)
T 3nok_A          125 PPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDV  203 (268)
T ss_dssp             TTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEE
T ss_pred             cCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeE
Confidence            9999999985555567778888888877 8999999999998888776321 1   245667776 67656555568899


Q ss_pred             EEEEcccCccccceeeeee-------ecCCcCCEEEEEecC---CEEEEEe
Q 009993          341 HMYEIINDCTEANVLLVAT-------WIPHTGPVNSLAFEF---PWLVSAA  381 (520)
Q Consensus       341 ~iwd~~~~~~~~~~~~~~~-------~~~h~~~v~~l~~~~---~~l~s~s  381 (520)
                      .+.|..++.....+..-..       ...-....+.|+++|   .+++||-
T Consensus       204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            9999999843222111000       011224679999986   3555553

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.56  E-value=2.6e-05  Score=79.20  Aligned_cols=232  Identities=14%  Similarity=0.110  Sum_probs=136.6

Q ss_pred             EEEEeCCCeEEEEECCCCcEEEEeCCCCc----eEEE--EecCCCEEEEEe------CCCcEEEEEcccCcceeeeccCC
Q 009993          157 LFTSGYDSIVRMWHLEDGFSIASSKPLGC----TIRA--VAADKKLLVAGG------TDGFIHCWRAVEVLPHLFDISGS  224 (520)
Q Consensus       157 l~sgs~dg~v~vwd~~~~~~~~~~~~~~~----~v~~--~~~~~~~l~sg~------~dg~i~vwd~~~~~~~~~~~~~~  224 (520)
                      |+.++.|+.|..+|..+|+.+........    .+.+  +..+ ..+++++      .+|.|..+|..+++.. +.....
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~-W~~~~~  201 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVK-DKVIIGSSGAELGVRGYLTAYDVKTGEQV-WRAYAT  201 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET-TEEEECCBCGGGTCCCEEEEEETTTCCEE-EEEESS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEEC-CEEEEEecccccCCCCeEEEEECCCCcEE-EEEcCC
Confidence            88888999999999999998876542210    1110  0123 4555555      3799999999988642 211111


Q ss_pred             ccccce--------------------EE----eccC-CCCeE-EEEE--cCCEEEEEecC----------------CeEE
Q 009993          225 EKQNTQ--------------------FR----LWEH-EGPIT-SLAL--DLTRIYSGSWD----------------MTVR  260 (520)
Q Consensus       225 ~~~~~~--------------------~~----~~~h-~~~v~-~l~~--~~~~l~s~s~d----------------g~v~  260 (520)
                      ......                    ..    ...+ ...+. .+++  ..+.++.++.+                +.|.
T Consensus       202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~  281 (599)
T 1w6s_A          202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (599)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence            000000                    00    0000 01111 2233  45677777655                3899


Q ss_pred             EEECCCCcEEEEeeec-----------cCEE-EEe-eCC---CEEEEEc-CCeEEEEECCCCeeeEEeeccc--------
Q 009993          261 VWDRALLKCLKVLRHS-----------DWVY-GLA-PHD---TTVASTS-GSDVYIWDTNSGCLLTVVNGAH--------  315 (520)
Q Consensus       261 iwd~~~~~~~~~~~~~-----------~~v~-~~~-~~~---~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~--------  315 (520)
                      .+|.++++.+..++..           .++. .+. .++   ..++.++ +|.++++|.++|+.+.......        
T Consensus       282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~  361 (599)
T 1w6s_A          282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSV  361 (599)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred             EEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccc
Confidence            9999999998887621           1122 222 356   4566676 8999999999999887664221        


Q ss_pred             ---c-cce--------------------------EEEEecCCCCEEEEEe------------------------------
Q 009993          316 ---V-GNT--------------------------KSLARSHTGDFLFTGG------------------------------  335 (520)
Q Consensus       316 ---~-~~i--------------------------~~l~~s~~~~~l~tg~------------------------------  335 (520)
                         . .++                          ..++++|+..++++..                              
T Consensus       362 ~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~  441 (599)
T 1w6s_A          362 DLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPG  441 (599)
T ss_dssp             CTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred             ccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccC
Confidence               0 011                          2356777766655432                              


Q ss_pred             ---------CCCeEEEEEcccCccccceeeeeeecCCcCCE--EEEEecCCEEEEEeCCCcEEEEeCCccccc
Q 009993          336 ---------EDGAIHMYEIINDCTEANVLLVATWIPHTGPV--NSLAFEFPWLVSAAGDGKLSLIDVRKLLRS  397 (520)
Q Consensus       336 ---------~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v--~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~  397 (520)
                               .+|.|..||+.+++      .+..... ..++  ..+...+..++.++.||.++.||.+++...
T Consensus       442 p~~~~~~~~~~G~l~A~D~~tG~------~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l  507 (599)
T 1w6s_A          442 PKGDRQNYEGLGQIKAYNAITGD------YKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL  507 (599)
T ss_dssp             TTSBTTTTBCCEEEEEECTTTCC------EEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CcCCcccCCCcCeEEEEECCCCC------EEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEE
Confidence                     34678888888773      3332211 1111  124446688888999999999999986443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.54  E-value=2.1e-05  Score=81.63  Aligned_cols=264  Identities=11%  Similarity=0.056  Sum_probs=142.3

Q ss_pred             EEEEcc-CCCEEEEEeCCC-----------eEEEEECCCCcE--EEEeC-CCC--ceEEEEecCCCEEEEEeC-CCcEEE
Q 009993          147 TVFVLA-SAKLLFTSGYDS-----------IVRMWHLEDGFS--IASSK-PLG--CTIRAVAADKKLLVAGGT-DGFIHC  208 (520)
Q Consensus       147 ~l~~~~-~~~~l~sgs~dg-----------~v~vwd~~~~~~--~~~~~-~~~--~~v~~~~~~~~~l~sg~~-dg~i~v  208 (520)
                      .+++.+ ++++++.|+.+.           .+.+||..+++-  +..+. .+.  +...++..++.+++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            455667 888888887643           588999987753  22221 121  222345588999999985 467999


Q ss_pred             EEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEe-cC-----CeEEEEECCCCcEEEEe-----e--
Q 009993          209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGS-WD-----MTVRVWDRALLKCLKVL-----R--  274 (520)
Q Consensus       209 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s-~d-----g~v~iwd~~~~~~~~~~-----~--  274 (520)
                      ||..+..-.           ....+......-....+ ++..++.|+ .+     ..+.+||..+.+-...-     .  
T Consensus       270 yd~~t~~W~-----------~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~  338 (656)
T 1k3i_A          270 YDSSSDSWI-----------PGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPML  338 (656)
T ss_dssp             EEGGGTEEE-----------ECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGC
T ss_pred             ecCcCCcee-----------ECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccc
Confidence            998765321           11111122223334455 788888888 34     57999999876543320     0  


Q ss_pred             eccCEEEEeeCCCEEEEE----------cCCeEEEEECCCCeeeEEeecccc---------cceEEEEecC-CCCEEEEE
Q 009993          275 HSDWVYGLAPHDTTVAST----------SGSDVYIWDTNSGCLLTVVNGAHV---------GNTKSLARSH-TGDFLFTG  334 (520)
Q Consensus       275 ~~~~v~~~~~~~~~l~~~----------~d~~i~iwd~~~~~~~~~~~~~~~---------~~i~~l~~s~-~~~~l~tg  334 (520)
                      ....-..+..++..++.+          ....+..||..+..-...... +.         ..-.++.|.. ++++++.|
T Consensus       339 ~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~-~~~~~~~~~~~~~~~av~~~~~~~~i~v~G  417 (656)
T 1k3i_A          339 TADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGK-RQSNRGVAPDAMCGNAVMYDAVKGKILTFG  417 (656)
T ss_dssp             CCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEE-CEETTEECCCCBTCEEEEEETTTTEEEEEC
T ss_pred             cccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCc-cccccccCCCCCCCceEeccCCCCeEEEEe
Confidence            000000001233333333          235678899987754433221 11         1234455543 67788888


Q ss_pred             eCCC-----------eEEEEEcccCccccceeeee--eecCCcCCEEEEEe-cCCEEEEEeCC-----------CcEEEE
Q 009993          335 GEDG-----------AIHMYEIINDCTEANVLLVA--TWIPHTGPVNSLAF-EFPWLVSAAGD-----------GKLSLI  389 (520)
Q Consensus       335 ~~dg-----------~i~iwd~~~~~~~~~~~~~~--~~~~h~~~v~~l~~-~~~~l~s~s~d-----------g~i~vw  389 (520)
                      +.++           .|.+||..+..-    ..+.  .+........++.. ++..++.|+.+           ..+.+|
T Consensus       418 G~~~~~~~~~~~~~~~v~~yd~~~~~W----~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~y  493 (656)
T 1k3i_A          418 GSPDYQDSDATTNAHIITLGEPGTSPN----TVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIY  493 (656)
T ss_dssp             CBSSSSSSBCCCCEEEEECCSTTSCCE----EEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEE
T ss_pred             CCCCCCCCCcCCcceEEEcCCCCCCCe----eEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEE
Confidence            7543           577777766521    1111  11111122234445 67888888754           468899


Q ss_pred             eCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecC
Q 009993          390 DVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGE  441 (520)
Q Consensus       390 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~  441 (520)
                      |..+..-             ..+.........|.  +..+.++++.++.||.
T Consensus       494 dp~t~~W-------------~~~~~~~~~R~~hs--~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          494 VPEQDTF-------------YKQNPNSIVRVYHS--ISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             EGGGTEE-------------EECCCCSSCCCTTE--EEEECTTSCEEEEECC
T ss_pred             cCCCCce-------------eecCCCCCcccccc--HhhcCCCcEEEecCCC
Confidence            9876321             11111111122343  2234467888888885

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.53  E-value=3.5e-05  Score=78.17  Aligned_cols=235  Identities=14%  Similarity=0.083  Sum_probs=139.7

Q ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeCCCC--c--eEEE-EecCCCEEEEEeC------CCcEEEEEcccCcceeeecc
Q 009993          154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLG--C--TIRA-VAADKKLLVAGGT------DGFIHCWRAVEVLPHLFDIS  222 (520)
Q Consensus       154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~--~--~v~~-~~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~  222 (520)
                      +..++.++.|+.|..+|..+|+.+.......  .  .+.+ -...+..+++++.      +|.|..+|..+++.. +...
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~-W~~~  193 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELK-WRAF  193 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEE-EEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEE-EEEc
Confidence            5678888899999999999999887654221  0  1110 0012445666655      789999999988642 2111


Q ss_pred             CCccccce--------------------EE----eccCC-CCe-EEEEEc--CCEEEEEecC----------------Ce
Q 009993          223 GSEKQNTQ--------------------FR----LWEHE-GPI-TSLALD--LTRIYSGSWD----------------MT  258 (520)
Q Consensus       223 ~~~~~~~~--------------------~~----~~~h~-~~v-~~l~~~--~~~l~s~s~d----------------g~  258 (520)
                      ........                    ..    ...+. +.+ ..++++  .+.++.++.+                +.
T Consensus       194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~  273 (571)
T 2ad6_A          194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT  273 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred             cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence            11000000                    00    00000 001 123443  3566666532                36


Q ss_pred             EEEEECCCCcEEEEeeec-----------cCEE-EEeeCCC---EEEEEc-CCeEEEEECCCCeeeEEeecccc------
Q 009993          259 VRVWDRALLKCLKVLRHS-----------DWVY-GLAPHDT---TVASTS-GSDVYIWDTNSGCLLTVVNGAHV------  316 (520)
Q Consensus       259 v~iwd~~~~~~~~~~~~~-----------~~v~-~~~~~~~---~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~------  316 (520)
                      |..+|.++++.+..++..           .++. ....+++   .++.++ +|.++++|..+|+.+..+.....      
T Consensus       274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~  353 (571)
T 2ad6_A          274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKK  353 (571)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred             EEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccccc
Confidence            999999999998877621           1222 1224664   566666 89999999999998877653220      


Q ss_pred             ------cce--------------------------EEEEecCCCCEEEEEe-----------------------------
Q 009993          317 ------GNT--------------------------KSLARSHTGDFLFTGG-----------------------------  335 (520)
Q Consensus       317 ------~~i--------------------------~~l~~s~~~~~l~tg~-----------------------------  335 (520)
                            .++                          ..++++|+..++++..                             
T Consensus       354 ~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~  433 (571)
T 2ad6_A          354 VDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYP  433 (571)
T ss_dssp             ECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred             ccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceecc
Confidence                  111                          2357788877777654                             


Q ss_pred             --------CCCeEEEEEcccCccccceeeeeeecCCcCCEE--EEEecCCEEEEEeCCCcEEEEeCCcccc
Q 009993          336 --------EDGAIHMYEIINDCTEANVLLVATWIPHTGPVN--SLAFEFPWLVSAAGDGKLSLIDVRKLLR  396 (520)
Q Consensus       336 --------~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~--~l~~~~~~l~s~s~dg~i~vwd~~~~~~  396 (520)
                              .+|.|..||+.+++      .+.++... ..+.  .+...+..++.++.||.|+.||.+++..
T Consensus       434 ~~~~~~~~~~g~l~a~D~~tG~------~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~  497 (571)
T 2ad6_A          434 GPNGPTKKEMGQIRAFDLTTGK------AKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             CTTSTTSCCCEEEEEECTTTCC------EEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             CccccCCCCCCeEEEEECCCCC------EEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence                    34788889988883      33333211 1111  1233567888899999999999998643

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.50  E-value=3.1e-05  Score=76.78  Aligned_cols=222  Identities=12%  Similarity=0.026  Sum_probs=143.0

Q ss_pred             EEEEeCCCeEEEEECCCCcEEEEeCC---------------------------------CC--------ceEEEEe----
Q 009993          157 LFTSGYDSIVRMWHLEDGFSIASSKP---------------------------------LG--------CTIRAVA----  191 (520)
Q Consensus       157 l~sgs~dg~v~vwd~~~~~~~~~~~~---------------------------------~~--------~~v~~~~----  191 (520)
                      +.||+..|.++|+-+.+++.++.+..                                 +.        ..-..++    
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            66888899999999888876655310                                 00        0012333    


Q ss_pred             -cCCCEEEEEeC-CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE----cCCEEEEEe-----------
Q 009993          192 -ADKKLLVAGGT-DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGS-----------  254 (520)
Q Consensus       192 -~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s-----------  254 (520)
                       +||++++.... ++.|.+.|+.+.+.           ..+..+. .......+++    +++++++++           
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~~~-----------~~ii~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~  165 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVMKC-----------DAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT  165 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEE-----------EEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCceE-----------eeEEeCC-CCCCCcceeeeecCCCcEEEEecccccccCCCCc
Confidence             57888877665 45699999877531           1111222 2234666665    578888774           


Q ss_pred             -------cCCeEEEEECCCCcEEEEeee--ccCEEEEeeCCCEEEEEc-CC-----------------------------
Q 009993          255 -------WDMTVRVWDRALLKCLKVLRH--SDWVYGLAPHDTTVASTS-GS-----------------------------  295 (520)
Q Consensus       255 -------~dg~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~l~~~~-d~-----------------------------  295 (520)
                             .++.+.+.|..+.+...++.-  ...-..++++++++++++ +.                             
T Consensus       166 ~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v  245 (595)
T 1fwx_A          166 NMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI  245 (595)
T ss_dssp             STTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred             ccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEec
Confidence                   356899999999998888773  222344558888888877 32                             


Q ss_pred             ---------eEEEEECCC--Cee-eEEeecccccceEEEEecCCCCEEEEEe-CCCeEEEEEcccCcc------ccceee
Q 009993          296 ---------DVYIWDTNS--GCL-LTVVNGAHVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDCT------EANVLL  356 (520)
Q Consensus       296 ---------~i~iwd~~~--~~~-~~~~~~~~~~~i~~l~~s~~~~~l~tg~-~dg~i~iwd~~~~~~------~~~~~~  356 (520)
                               .|.+.|.++  +.. +..+.  -.....++.++|||+++++++ .+.+|.++|+.+...      ......
T Consensus       246 ~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip--vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v  323 (595)
T 1fwx_A          246 AAGDYQELNGVKVVDGRKEASSLFTRYIP--IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV  323 (595)
T ss_dssp             HHTCSEEETTEEEEECSGGGCCSSEEEEE--EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred             cCCCeeEECcEEEEeCcccCCceeEEEEe--cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence                     377777777  444 44443  234566899999999877655 578999999986521      000012


Q ss_pred             eeeecCCcCCEEEEEecCC--EEEEEeCCCcEEEEeCCc
Q 009993          357 VATWIPHTGPVNSLAFEFP--WLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       357 ~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~  393 (520)
                      +.... -......++|+++  ..++...|+.|.+||+.+
T Consensus       324 ~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          324 VAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             EEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            22222 2345788999763  344566799999999987

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.47  E-value=4.2e-05  Score=67.14  Aligned_cols=181  Identities=12%  Similarity=0.013  Sum_probs=114.8

Q ss_pred             EEEEecCCC-EEEEEeCC--CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEe-cCCeEEEE
Q 009993          187 IRAVAADKK-LLVAGGTD--GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS-WDMTVRVW  262 (520)
Q Consensus       187 v~~~~~~~~-~l~sg~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s-~dg~v~iw  262 (520)
                      ...+..++. +..+.+.+  ..|+.+|+.+++..           ....+..+ -.-..+++.++.|+... .++.+.+|
T Consensus        23 tqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~-----------~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~   90 (243)
T 3mbr_X           23 TEGLFYLRGHLYESTGETGRSSVRKVDLETGRIL-----------QRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVY   90 (243)
T ss_dssp             EEEEEEETTEEEEEECCTTSCEEEEEETTTCCEE-----------EEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred             cccEEEECCEEEEECCCCCCceEEEEECCCCCEE-----------EEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEE
Confidence            334443334 44455554  48999999887421           11112111 11234566666655554 57899999


Q ss_pred             ECCCCcEEEEeeeccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccc----cceEEEEecCCCCEEEEEeCC
Q 009993          263 DRALLKCLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHV----GNTKSLARSHTGDFLFTGGED  337 (520)
Q Consensus       263 d~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~----~~i~~l~~s~~~~~l~tg~~d  337 (520)
                      |..+.+.+.++.....-..+.+++..|+.+. ++.|.++|..+.+.+..+.-+..    ..++.+.+. +|...+....+
T Consensus        91 D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s  169 (243)
T 3mbr_X           91 DLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLT  169 (243)
T ss_dssp             ETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTT
T ss_pred             ECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCC
Confidence            9999999999985555567778887777766 88999999999988887763211    345666765 66666556568


Q ss_pred             CeEEEEEcccCccccceeeeeeec--------CCcCCEEEEEecC--C-EEEEEe
Q 009993          338 GAIHMYEIINDCTEANVLLVATWI--------PHTGPVNSLAFEF--P-WLVSAA  381 (520)
Q Consensus       338 g~i~iwd~~~~~~~~~~~~~~~~~--------~h~~~v~~l~~~~--~-~l~s~s  381 (520)
                      ..|.+.|..++.....+..- .+.        ......+.|+++|  + ++++|-
T Consensus       170 ~~I~vIDp~tG~V~~~idl~-~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          170 SRIARIDPASGKVVAWIDLQ-ALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TEEEEECTTTCBEEEEEECG-GGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CeEEEEECCCCCEEEEEECC-cCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            89999999998432221110 010        1224679999986  3 445543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.46  E-value=0.0013  Score=69.81  Aligned_cols=237  Identities=11%  Similarity=0.067  Sum_probs=147.3

Q ss_pred             cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC-------CCceEEEEecC-CCEEEEEeCCCcEEEEEccc
Q 009993          142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP-------LGCTIRAVAAD-KKLLVAGGTDGFIHCWRAVE  213 (520)
Q Consensus       142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-------~~~~v~~~~~~-~~~l~sg~~dg~i~vwd~~~  213 (520)
                      ...|.++...++|.+. .|+.+ -|.+||..++........       ....|.++..| ...|..|+.++-|..++..+
T Consensus       262 ~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~  339 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIR  339 (795)
T ss_dssp             CSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGG
T ss_pred             CCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCc
Confidence            3579999998888754 45555 489999877754432211       23567777632 34577888888899998765


Q ss_pred             CcceeeeccCCccccceEEeccCCCCeEEEEEcC-CEEEEEecCCeEEEEECCCCcEEEEee---------eccCEEEEe
Q 009993          214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL-TRIYSGSWDMTVRVWDRALLKCLKVLR---------HSDWVYGLA  283 (520)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~---------~~~~v~~~~  283 (520)
                      +....+..... .      -.-....|.++..+. ..|..|+.++-|..||..+++......         ....|.++.
T Consensus       340 ~~~~~~~~~~~-~------~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~  412 (795)
T 4a2l_A          340 NRFKNIRNIPY-K------NSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVY  412 (795)
T ss_dssp             GSSEEECCCTT-S------SSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEE
T ss_pred             ccceEEcCCCC-C------CCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEE
Confidence            43222111000 0      001245689998843 567788888789999988776544321         135688877


Q ss_pred             --eCCCEEEEEc-CCeEEEEECCCCeeeEEeec---ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeee
Q 009993          284 --PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG---AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV  357 (520)
Q Consensus       284 --~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~---~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~  357 (520)
                        .+++.|.+|+ ++.|..+|..+++.......   .....|.++...++|.+.+.. .+ -+.+||..++..    ...
T Consensus       413 ~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~----~~~  486 (795)
T 4a2l_A          413 VDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSF----TTI  486 (795)
T ss_dssp             EETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEE----EEC
T ss_pred             EcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeE----EEc
Confidence              4566355555 78899999988764433210   124578999988888755544 44 488899876521    111


Q ss_pred             eee----cCCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcc
Q 009993          358 ATW----IPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       358 ~~~----~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~  394 (520)
                      ...    .-....|.++..++ ..|..|+. +-|..||..+.
T Consensus       487 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~  527 (795)
T 4a2l_A          487 EKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGL  527 (795)
T ss_dssp             CBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETT
T ss_pred             cccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCC
Confidence            100    11235789998865 45666666 55888987653

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.41  E-value=0.00021  Score=68.40  Aligned_cols=191  Identities=10%  Similarity=0.033  Sum_probs=116.6

Q ss_pred             cCCCEEE-EEeCCCcEEEEEcccCcceeeeccCCccccceEEec------c-CCCCeEEEEE--cCCEEEEEecC-----
Q 009993          192 ADKKLLV-AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW------E-HEGPITSLAL--DLTRIYSGSWD-----  256 (520)
Q Consensus       192 ~~~~~l~-sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~------~-h~~~v~~l~~--~~~~l~s~s~d-----  256 (520)
                      .+.++|+ .|..++.|.++|+.+...         .......+.      . -...-..+..  ++ .++++..+     
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~---------~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~  162 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPR---------EPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEG  162 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTT---------SCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCS
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCC---------CceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCC
Confidence            4566655 456678999999865411         011111110      0 0011223333  55 66666555     


Q ss_pred             -CeEEEEECCCCcEEEEeeec-cC---E--EEEeeCCCEEEEEc--------------------CCeEEEEECCCCeeeE
Q 009993          257 -MTVRVWDRALLKCLKVLRHS-DW---V--YGLAPHDTTVASTS--------------------GSDVYIWDTNSGCLLT  309 (520)
Q Consensus       257 -g~v~iwd~~~~~~~~~~~~~-~~---v--~~~~~~~~~l~~~~--------------------d~~i~iwd~~~~~~~~  309 (520)
                       |.|.++|..+++.+..+... ..   -  ..+.++++.++++.                    +..|.+||+.+++.+.
T Consensus       163 ~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~  242 (462)
T 2ece_A          163 PGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH  242 (462)
T ss_dssp             CCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE
T ss_pred             CCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee
Confidence             78999999999999988622 21   2  23468888888884                    6889999999998888


Q ss_pred             Eeecc-cccceEEEEe--cCCCCEEEEEe------CCCeEEEEEcccCccccceeee--ee--ecC-----------CcC
Q 009993          310 VVNGA-HVGNTKSLAR--SHTGDFLFTGG------EDGAIHMYEIINDCTEANVLLV--AT--WIP-----------HTG  365 (520)
Q Consensus       310 ~~~~~-~~~~i~~l~~--s~~~~~l~tg~------~dg~i~iwd~~~~~~~~~~~~~--~~--~~~-----------h~~  365 (520)
                      ++..+ .......+.|  +|+++++++++      .+++|.+|....+.. .....+  ..  ..+           -..
T Consensus       243 tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~-~~~~vIdi~~~~v~~~lp~~~~~f~~~~~  321 (462)
T 2ece_A          243 SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW-NAEKVIEIPAEPLEGNLPEILKPFKAVPP  321 (462)
T ss_dssp             EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE-EEEEEEEECCEECCSSCCGGGGGGTEECC
T ss_pred             EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce-eEEEEEeCCCccccccccccccccccCCC
Confidence            88753 2233445545  99999988877      466888877654311 000000  00  000           013


Q ss_pred             CEEEEEecC--CEEEEEeC-CCcEEEEeCCc
Q 009993          366 PVNSLAFEF--PWLVSAAG-DGKLSLIDVRK  393 (520)
Q Consensus       366 ~v~~l~~~~--~~l~s~s~-dg~i~vwd~~~  393 (520)
                      .+..|.+++  ++|.++.. .+.|.++|+..
T Consensus       322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          322 LVTDIDISLDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             CCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred             ceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            456777765  66766654 68999999964

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.40  E-value=0.00046  Score=64.00  Aligned_cols=221  Identities=8%  Similarity=-0.049  Sum_probs=126.5

Q ss_pred             ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC-CCCceEEEEecCCCEEEEEeCCC--cEEEEEcccCcceee
Q 009993          143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRAVAADKKLLVAGGTDG--FIHCWRAVEVLPHLF  219 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~l~sg~~dg--~i~vwd~~~~~~~~~  219 (520)
                      .....++|+++++++++-..++.|..||.... ....+. +....-.++.++++++++.....  .|..++..++.... 
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~-  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET-  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE-
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE-
Confidence            45678999999997777778899999997754 332222 22222234557888666554332  36666655553211 


Q ss_pred             eccCCccccceEEeccCCCCeEEEEE-cCCEEEEEe-cCCeEEEEECCCCcE-EEEe----------eeccCEEEEeeCC
Q 009993          220 DISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGS-WDMTVRVWDRALLKC-LKVL----------RHSDWVYGLAPHD  286 (520)
Q Consensus       220 ~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s-~dg~v~iwd~~~~~~-~~~~----------~~~~~v~~~~~~~  286 (520)
                                .... ........++. .+..++... .++.|..+|..+++. +...          ..-...+.+++++
T Consensus       110 ----------~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg  178 (306)
T 2p4o_A          110 ----------LLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG  178 (306)
T ss_dssp             ----------EEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET
T ss_pred             ----------EEeC-CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCC
Confidence                      1111 11122233333 444444444 588999999876431 1110          0112345567888


Q ss_pred             CEEEEEc--CCeEEEEECCC-Cee--eEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec
Q 009993          287 TTVASTS--GSDVYIWDTNS-GCL--LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI  361 (520)
Q Consensus       287 ~~l~~~~--d~~i~iwd~~~-~~~--~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~  361 (520)
                      +.++.+.  .+.|..||+.. +..  ...+.  .......++++++|+++++....+.|.++|.... .    ..+..+.
T Consensus       179 ~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~--~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~-~----~~~~~~~  251 (306)
T 2p4o_A          179 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS-T----TIIAQAE  251 (306)
T ss_dssp             TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC-E----EEEECGG
T ss_pred             CEEEEEeCCCCEEEEEEeCCCCCCCccEEEe--ccCCCCCeEECCCCCEEEEeCCCCeEEEECCCCC-E----EEEeecc
Confidence            7766665  68899999875 321  12221  1134567889999988777777889999987522 1    1122222


Q ss_pred             CCcCCEEEEEec---C--CEEEEEeCC
Q 009993          362 PHTGPVNSLAFE---F--PWLVSAAGD  383 (520)
Q Consensus       362 ~h~~~v~~l~~~---~--~~l~s~s~d  383 (520)
                      .....+++++|.   +  +.|+.++..
T Consensus       252 ~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          252 QGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             cccCCceEEEEecccCCCCEEEEECCC
Confidence            233568899986   3  455555543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.40  E-value=0.00034  Score=74.16  Aligned_cols=285  Identities=10%  Similarity=0.042  Sum_probs=161.4

Q ss_pred             cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC--------------CCCceEEEEecC-CCEEEEEeCCCcE
Q 009993          142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK--------------PLGCTIRAVAAD-KKLLVAGGTDGFI  206 (520)
Q Consensus       142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~--------------~~~~~v~~~~~~-~~~l~sg~~dg~i  206 (520)
                      ...|.++...++|. |..|+..+-|.++|..++.......              -....|.++..| ...|..|+.++-|
T Consensus       257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl  335 (781)
T 3v9f_A          257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGI  335 (781)
T ss_dssp             CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCE
T ss_pred             CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeE
Confidence            35699998887776 5556664568889987664322111              123467777633 3457788878888


Q ss_pred             EEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcC-CEEEEEecCCeEEEEECCCCcEEEEe---e-eccCEEE
Q 009993          207 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL-TRIYSGSWDMTVRVWDRALLKCLKVL---R-HSDWVYG  281 (520)
Q Consensus       207 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~---~-~~~~v~~  281 (520)
                      ..++..+.....+......  ...  ..-....|.++..+. ..|..|+.++-|..||..++......   . ....|.+
T Consensus       336 ~~~~~~~~~~~~~~~~~~~--~~~--~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~  411 (781)
T 3v9f_A          336 NFISNAPPTFHTWSYSPTQ--MNE--SSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLC  411 (781)
T ss_dssp             EEECSSCCSCEEEC----C--CCS--SCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEE
T ss_pred             EEeCCCCCcceeeccCccc--ccc--CCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEE
Confidence            8888765432222110000  000  001245688998854 66778887777999998765432211   1 3456888


Q ss_pred             Eee--CCCEEEEEcCCeEEEEECCCCeeeEEee-cccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeee
Q 009993          282 LAP--HDTTVASTSGSDVYIWDTNSGCLLTVVN-GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA  358 (520)
Q Consensus       282 ~~~--~~~~l~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~  358 (520)
                      +..  ++.+.+...++.+..+|..+++...... ......|.++...+++.+ ..|+. +-|..||..++..    ....
T Consensus       412 i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~----~~~~  485 (781)
T 3v9f_A          412 SLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKI-WIGTH-AGVFVIDLASKKV----IHHY  485 (781)
T ss_dssp             EEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEE-EEEET-TEEEEEESSSSSC----CEEE
T ss_pred             EEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCE-EEEEC-CceEEEeCCCCeE----Eecc
Confidence            874  4555554436889999998775433221 113457899988877764 44555 5588899876521    1111


Q ss_pred             eec---CCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC
Q 009993          359 TWI---PHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD  434 (520)
Q Consensus       359 ~~~---~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  434 (520)
                      ...   .....|.++..++ ..|..|+.++-|..||..+....             ..... ..+  ....|.++..+.+
T Consensus       486 ~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-------------~~~~~-~~l--~~~~i~~i~~d~~  549 (781)
T 3v9f_A          486 DTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVR-------------KFNQY-EGF--CSNTINQIYRSSK  549 (781)
T ss_dssp             CTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEE-------------EECTT-TTC--SCSCEEEEEECTT
T ss_pred             cCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEE-------------EccCC-CCC--CCCeeEEEEECCC
Confidence            111   1135789998865 56777776555888887653110             00100 001  1234666666543


Q ss_pred             -EEEEecCCCeEEEEeCCch
Q 009993          435 -RIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       435 -~l~sg~~Dg~v~iwd~~~~  453 (520)
                       .|..|+.+|.|..||..++
T Consensus       550 g~lWi~T~~Glv~~~d~~~~  569 (781)
T 3v9f_A          550 GQMWLATGEGLVCFPSARNF  569 (781)
T ss_dssp             SCEEEEETTEEEEESCTTTC
T ss_pred             CCEEEEECCCceEEECCCCC
Confidence             4444555676588887654

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.36  E-value=2.3e-07  Score=83.63  Aligned_cols=49  Identities=20%  Similarity=0.246  Sum_probs=45.1

Q ss_pred             cccCCCHHHHHHHccCCChhhhH-HHhhhhhhHHHhhcCcchhhhhhhhh
Q 009993           63 TITDLPPALISEILNCLDPKELG-IVSCVSPILHRLASDHHAWKEFYCER  111 (520)
Q Consensus        63 ~~~~LP~el~~~i~~~L~~~~l~-~~s~v~~~~~~~~~~~~lW~~~~~~~  111 (520)
                      .+..||+|++.+||++|++++|+ +|++|||+|+.++++..+|+..+...
T Consensus        50 ~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~   99 (297)
T 2e31_A           50 YLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE   99 (297)
T ss_dssp             CTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred             ChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence            57899999999999999999999 99999999999999999999865444

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.35  E-value=0.00032  Score=63.59  Aligned_cols=192  Identities=14%  Similarity=0.067  Sum_probs=112.4

Q ss_pred             CCeEEEEEc--CCEEEEE-ecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc--CCeEEEEECCCCeeeE
Q 009993          238 GPITSLALD--LTRIYSG-SWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS--GSDVYIWDTNSGCLLT  309 (520)
Q Consensus       238 ~~v~~l~~~--~~~l~s~-s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~--d~~i~iwd~~~~~~~~  309 (520)
                      ..+..++++  ++.|+.+ ..++.|..++.........+. .......+.  +++..++.+.  .+.|.++++.......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            356788884  4555554 456899999997665433332 113455555  5555555554  6889999987543322


Q ss_pred             EeecccccceEEEEecCCCCEEEEEeC---CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEE-EeCC
Q 009993          310 VVNGAHVGNTKSLARSHTGDFLFTGGE---DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVS-AAGD  383 (520)
Q Consensus       310 ~~~~~~~~~i~~l~~s~~~~~l~tg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s-~s~d  383 (520)
                      ... ........++++|++..|+.+..   .+.|..+++.....    ..+  ..........+++++  ..|+. -...
T Consensus       116 ~~~-~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~----~~~--~~~~~~~P~gia~d~~~~~lyv~d~~~  188 (267)
T 1npe_A          116 LFD-TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR----RIL--AQDNLGLPNGLTFDAFSSQLCWVDAGT  188 (267)
T ss_dssp             EEC-SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC----EEE--ECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred             EEE-CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc----EEE--EECCCCCCcEEEEcCCCCEEEEEECCC
Confidence            222 22246789999997666655544   36888888765411    111  112234678899975  45544 4456


Q ss_pred             CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEeCCchHhH
Q 009993          384 GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEI  456 (520)
Q Consensus       384 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~~  456 (520)
                      +.|.++|+......          .+.         .+. .....+.+++. .+++....+.|..+|..+++.+
T Consensus       189 ~~I~~~~~~g~~~~----------~~~---------~~~-~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~  242 (267)
T 1npe_A          189 HRAECLNPAQPGRR----------KVL---------EGL-QYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEM  242 (267)
T ss_dssp             TEEEEEETTEEEEE----------EEE---------ECC-CSEEEEEEETTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CEEEEEecCCCceE----------EEe---------cCC-CCceEEEEeCCEEEEEECCCCeEEEEeCCCCCce
Confidence            88999998753110          000         010 11123444555 4555556789999999877544

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.34  E-value=8.3e-05  Score=71.17  Aligned_cols=177  Identities=14%  Similarity=0.049  Sum_probs=114.7

Q ss_pred             EEEEEEccCCCEEEEEeCC------CeEEEEECCCCcEEEEeCCCCce---E--EEEecCCCEEEEEe------------
Q 009993          145 VLTVFVLASAKLLFTSGYD------SIVRMWHLEDGFSIASSKPLGCT---I--RAVAADKKLLVAGG------------  201 (520)
Q Consensus       145 V~~l~~~~~~~~l~sgs~d------g~v~vwd~~~~~~~~~~~~~~~~---v--~~~~~~~~~l~sg~------------  201 (520)
                      -..+...|+| +++++..+      |.|.+.|..+++.+.++.....+   -  .-++|+++.+++..            
T Consensus       140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~  218 (462)
T 2ece_A          140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLK  218 (462)
T ss_dssp             EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCC
T ss_pred             ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccc
Confidence            3456778999 77776665      78999999999999988632221   1  34579999888874            


Q ss_pred             -------CCCcEEEEEcccCcceeeeccCCccccceEEecc--CCCCeEEEEE----cCCEEEEEe------cCCeEEEE
Q 009993          202 -------TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE--HEGPITSLAL----DLTRIYSGS------WDMTVRVW  262 (520)
Q Consensus       202 -------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~----~~~~l~s~s------~dg~v~iw  262 (520)
                             .+.+|.+||+.++.             ...++.-  .......+.|    +++++++++      .+++|.+|
T Consensus       219 ~~~~~~~~~d~V~v~D~~~~k-------------~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~  285 (462)
T 2ece_A          219 LEHLKDRYGNRIHFWDLRKRK-------------RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLW  285 (462)
T ss_dssp             TTTHHHHSCCEEEEEETTTTE-------------EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEE
T ss_pred             hhhhhhccCCEEEEEECCCCc-------------EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEE
Confidence                   36899999997652             1112211  1123444545    566766665      45688776


Q ss_pred             ECCCCcE--EEEee---e----------------ccCEE--EEeeCCCEEEEEc--CCeEEEEECCC---CeeeEEeecc
Q 009993          263 DRALLKC--LKVLR---H----------------SDWVY--GLAPHDTTVASTS--GSDVYIWDTNS---GCLLTVVNGA  314 (520)
Q Consensus       263 d~~~~~~--~~~~~---~----------------~~~v~--~~~~~~~~l~~~~--d~~i~iwd~~~---~~~~~~~~~~  314 (520)
                      ....++.  .+.+.   .                .....  .+++++++|+++.  .+.|.+||+..   .+.+..+..+
T Consensus       286 ~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tG  365 (462)
T 2ece_A          286 FYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLG  365 (462)
T ss_dssp             EEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECB
T ss_pred             EecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeC
Confidence            6554421  12211   0                11222  3559999999988  68999999853   3555555433


Q ss_pred             cc-------------cceEEEEecCCCCEEEEEe
Q 009993          315 HV-------------GNTKSLARSHTGDFLFTGG  335 (520)
Q Consensus       315 ~~-------------~~i~~l~~s~~~~~l~tg~  335 (520)
                      -.             +....++++|||++|+++.
T Consensus       366 G~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          366 GIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            10             1357899999999999887

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.33  E-value=0.0018  Score=68.63  Aligned_cols=242  Identities=10%  Similarity=0.012  Sum_probs=142.0

Q ss_pred             ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC-------CCceEEEEec-CCCEEEEEeCCCcEEEEEcccC
Q 009993          143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP-------LGCTIRAVAA-DKKLLVAGGTDGFIHCWRAVEV  214 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-------~~~~v~~~~~-~~~~l~sg~~dg~i~vwd~~~~  214 (520)
                      ..|.++...++|.+.+ |+.+ -+.+||..+++.......       ....|.++.. ....|..|+..+-|.++|..++
T Consensus       211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~  288 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQN  288 (781)
T ss_dssp             SSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC
T ss_pred             CceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCC
Confidence            5689998888887555 4445 589999877654322111       2345777763 3456777887566888887665


Q ss_pred             cceeeeccCCccc-cceEEeccCCCCeEEEEEcC-CEEEEEecCCeEEEEECCCCcEEEEe-------e---eccCEEEE
Q 009993          215 LPHLFDISGSEKQ-NTQFRLWEHEGPITSLALDL-TRIYSGSWDMTVRVWDRALLKCLKVL-------R---HSDWVYGL  282 (520)
Q Consensus       215 ~~~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~-------~---~~~~v~~~  282 (520)
                      ....+....-... .......-....|.++..|. ..|..|+.++-|..++..+.......       .   ....|.++
T Consensus       289 ~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i  368 (781)
T 3v9f_A          289 QFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSV  368 (781)
T ss_dssp             ---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEE
T ss_pred             eeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEE
Confidence            3211110000000 00000011346788988843 56788887788999998765433221       1   23568888


Q ss_pred             eeC--CCEEEEEcCCeEEEEECCCCeeeEEee--cccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeee
Q 009993          283 APH--DTTVASTSGSDVYIWDTNSGCLLTVVN--GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA  358 (520)
Q Consensus       283 ~~~--~~~l~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~  358 (520)
                      ..+  +.+.+...++.|..||..++.......  ......|.++...+++.+. .|+.++-+..+|..++.      ...
T Consensus       369 ~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~------~~~  441 (781)
T 3v9f_A          369 CDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGNISYYNTRLKK------FQI  441 (781)
T ss_dssp             EECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEE-EEETTEEEEEECSSSCE------EEE
T ss_pred             EEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEE-EEeccCCEEEEcCCCCc------EEE
Confidence            743  444444437789999987654322110  1234578999888777654 46776778889877662      111


Q ss_pred             ee--cCCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcc
Q 009993          359 TW--IPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       359 ~~--~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~  394 (520)
                      ..  ......|.++..++ ..|..|+. +-|..+|..+.
T Consensus       442 ~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~  479 (781)
T 3v9f_A          442 IELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASK  479 (781)
T ss_dssp             CCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSS
T ss_pred             eccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCC
Confidence            11  12346789998875 56777777 55888987753

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.30  E-value=0.00037  Score=70.77  Aligned_cols=236  Identities=16%  Similarity=0.156  Sum_probs=138.9

Q ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeCCCC---------ceEEEEe-cCCC-EEEEEeC------CCcEEEEEcccCcc
Q 009993          154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLG---------CTIRAVA-ADKK-LLVAGGT------DGFIHCWRAVEVLP  216 (520)
Q Consensus       154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~---------~~v~~~~-~~~~-~l~sg~~------dg~i~vwd~~~~~~  216 (520)
                      +..++.++.|+.|..+|..+|+.+.......         .++..=. .+++ .+++++.      +|.|..+|..+++.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            5678888899999999999999887664321         2222111 1233 5666653      78999999988864


Q ss_pred             eeeeccCCccc-----cceEEe----------------------ccCC-CCe-EEEEE--cCCEEEEEec----------
Q 009993          217 HLFDISGSEKQ-----NTQFRL----------------------WEHE-GPI-TSLAL--DLTRIYSGSW----------  255 (520)
Q Consensus       217 ~~~~~~~~~~~-----~~~~~~----------------------~~h~-~~v-~~l~~--~~~~l~s~s~----------  255 (520)
                      . +........     ......                      ..+. +.+ ..+++  ..+.++.++.          
T Consensus       197 ~-W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r  275 (582)
T 1flg_A          197 I-WMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR  275 (582)
T ss_dssp             E-EEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred             E-eecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence            2 221111000     000000                      0000 000 12344  3466766653          


Q ss_pred             ----------C----CeEEEEECCCCcEEEEeee---c--------cCEEE-Ee-eCCC---EEEEEc-CCeEEEEECCC
Q 009993          256 ----------D----MTVRVWDRALLKCLKVLRH---S--------DWVYG-LA-PHDT---TVASTS-GSDVYIWDTNS  304 (520)
Q Consensus       256 ----------d----g~v~iwd~~~~~~~~~~~~---~--------~~v~~-~~-~~~~---~l~~~~-d~~i~iwd~~~  304 (520)
                                |    +.|..+|..+++.+..++.   .        .++.. .. .+++   .++.++ +|.++++|.++
T Consensus       276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t  355 (582)
T 1flg_A          276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN  355 (582)
T ss_dssp             SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred             ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence                      2    6899999999999988762   1        12221 11 3563   677777 89999999999


Q ss_pred             CeeeEEeecccc------------cce--------------------------------EEEEecCCCCEEEEEe-----
Q 009993          305 GCLLTVVNGAHV------------GNT--------------------------------KSLARSHTGDFLFTGG-----  335 (520)
Q Consensus       305 ~~~~~~~~~~~~------------~~i--------------------------------~~l~~s~~~~~l~tg~-----  335 (520)
                      |+.+..+.....            .++                                ..++++|+..++++..     
T Consensus       356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~  435 (582)
T 1flg_A          356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE  435 (582)
T ss_dssp             CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred             CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence            998877653210            000                                1345666655555432     


Q ss_pred             ----------------------------CCCeEEEEEcccCccccceeeeeeecCCcCCE--EEEEecCCEEEEEeCCCc
Q 009993          336 ----------------------------EDGAIHMYEIINDCTEANVLLVATWIPHTGPV--NSLAFEFPWLVSAAGDGK  385 (520)
Q Consensus       336 ----------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v--~~l~~~~~~l~s~s~dg~  385 (520)
                                                  .+|.|..||+.+++      .+.+..... ++  ..+...+..++.|+.||.
T Consensus       436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~------~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~  508 (582)
T 1flg_A          436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGK------VVWEHKEHL-PLWAGVLATAGNLVFTGTGDGY  508 (582)
T ss_dssp             EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCC------EEEEEEESS-CCCSCCEEETTTEEEEECTTSE
T ss_pred             eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCC------EEEEecCCC-CCcccceEeCCCEEEEECCCCc
Confidence                                        25788889998883      333322111 11  123345678889999999


Q ss_pred             EEEEeCCccccc
Q 009993          386 LSLIDVRKLLRS  397 (520)
Q Consensus       386 i~vwd~~~~~~~  397 (520)
                      ++.||.+++...
T Consensus       509 l~A~D~~tG~~l  520 (582)
T 1flg_A          509 FKAFDAKSGKEL  520 (582)
T ss_dssp             EEEEETTTCCEE
T ss_pred             EEEEECCCCCEE
Confidence            999999986433

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.28  E-value=0.00073  Score=63.10  Aligned_cols=230  Identities=10%  Similarity=-0.018  Sum_probs=130.6

Q ss_pred             cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC--C------------------CCceEEE--EecCCCEEEEEe
Q 009993          144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK--P------------------LGCTIRA--VAADKKLLVAGG  201 (520)
Q Consensus       144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~--~------------------~~~~v~~--~~~~~~~l~sg~  201 (520)
                      ...++++++++++++++..++.|..|+..++... .+.  .                  .......  +.+++..|+.+.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            3457788999988888889999999998765432 221  0                  0012333  445344566665


Q ss_pred             CCCcEEEEEcccCcceeeeccCCccccceEEecc-CCCCeEEEEEcC--CEEEEEec------------------CCeEE
Q 009993          202 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE-HEGPITSLALDL--TRIYSGSW------------------DMTVR  260 (520)
Q Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~--~~l~s~s~------------------dg~v~  260 (520)
                      ..+.|..+|..++....+..          ...+ .......+++++  ..++.+..                  ++.|.
T Consensus        99 ~~~~i~~~d~~~g~~~~~~~----------~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~  168 (322)
T 2fp8_A           99 CYYHLSVVGSEGGHATQLAT----------SVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLI  168 (322)
T ss_dssp             TTTEEEEECTTCEECEEEES----------EETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEE
T ss_pred             CCCCEEEEeCCCCEEEEecc----------cCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEE
Confidence            55558888765442211100          0011 123466777743  33444332                  36788


Q ss_pred             EEECCCCcEEEEeeeccCE--EEEeeCCCEEEEEc--CCeEEEEECCCCe--eeEEeecccccceEEEEecCCCCEEEEE
Q 009993          261 VWDRALLKCLKVLRHSDWV--YGLAPHDTTVASTS--GSDVYIWDTNSGC--LLTVVNGAHVGNTKSLARSHTGDFLFTG  334 (520)
Q Consensus       261 iwd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~--d~~i~iwd~~~~~--~~~~~~~~~~~~i~~l~~s~~~~~l~tg  334 (520)
                      .+|..+++...........  .++.++++.++++.  .+.|.+|++....  ....+.. ..+ ...+++.++|++.++.
T Consensus       169 ~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~  246 (322)
T 2fp8_A          169 KYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSS  246 (322)
T ss_dssp             EEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEE
T ss_pred             EEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEe
Confidence            8998777654333211122  34557888666554  6899999987521  1112211 223 7789999999877665


Q ss_pred             eC----------CCeEEEEEcccCccccceeeeeeecCC----cCCEEEEEecCCEEEEE-eCCCcEEEEeCCc
Q 009993          335 GE----------DGAIHMYEIINDCTEANVLLVATWIPH----TGPVNSLAFEFPWLVSA-AGDGKLSLIDVRK  393 (520)
Q Consensus       335 ~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~h----~~~v~~l~~~~~~l~s~-s~dg~i~vwd~~~  393 (520)
                      ..          .+.|..+|.. +      ..+..+...    ...++++.+....|+.+ ..++.|.++++..
T Consensus       247 ~~~~~~~~~~~~~~~v~~~d~~-G------~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          247 SEELDGNMHGRVDPKGIKFDEF-G------NILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EEETTSSTTSCEEEEEEEECTT-S------CEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC--
T ss_pred             cCcccccccCCCccEEEEECCC-C------CEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEeccc
Confidence            44          4667788764 3      223333222    23466677765555554 4678899998864

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.28  E-value=8.5e-05  Score=73.71  Aligned_cols=217  Identities=12%  Similarity=0.027  Sum_probs=128.6

Q ss_pred             cCCCEEEEEeC-CCeEEEEECCCCcEEE--EeC-CCCceEEEE-e-cCCCEEEEEe------------------CCCcEE
Q 009993          152 ASAKLLFTSGY-DSIVRMWHLEDGFSIA--SSK-PLGCTIRAV-A-ADKKLLVAGG------------------TDGFIH  207 (520)
Q Consensus       152 ~~~~~l~sgs~-dg~v~vwd~~~~~~~~--~~~-~~~~~v~~~-~-~~~~~l~sg~------------------~dg~i~  207 (520)
                      +||++++.... ++.|.+.|+.+.+...  .+. +....-.++ . |++.++++++                  .++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            37887777655 5679999999999877  443 232233344 3 8999998885                  245788


Q ss_pred             EEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecC-------------------------------
Q 009993          208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD-------------------------------  256 (520)
Q Consensus       208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-------------------------------  256 (520)
                      ++|..+.... +.          ....+ .-.-..+..+++++++.+.+                               
T Consensus       179 vID~~t~~v~-~q----------I~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~  246 (595)
T 1fwx_A          179 AVDADKWEVA-WQ----------VLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA  246 (595)
T ss_dssp             EEETTTTEEE-EE----------EEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred             EEECCCCeEE-EE----------EEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence            8888764311 11          01111 11111122244444444432                               


Q ss_pred             -------CeEEEEECCC--CcE-EEEeeecc--CEEEEeeCCCEEEEEc--CCeEEEEECCCCe------------eeEE
Q 009993          257 -------MTVRVWDRAL--LKC-LKVLRHSD--WVYGLAPHDTTVASTS--GSDVYIWDTNSGC------------LLTV  310 (520)
Q Consensus       257 -------g~v~iwd~~~--~~~-~~~~~~~~--~v~~~~~~~~~l~~~~--d~~i~iwd~~~~~------------~~~~  310 (520)
                             +.|.+.|.++  ++. +..+....  .-..++|||++++++.  +.+|.++|+.+.+            ....
T Consensus       247 ~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~  326 (595)
T 1fwx_A          247 AGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE  326 (595)
T ss_dssp             HTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred             CCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence                   2477888877  444 45555222  2344559999998888  6899999999653            2333


Q ss_pred             eecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcc----ccceeeeeeecCCcCCE-EEE----Ee--cCCEEEE
Q 009993          311 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT----EANVLLVATWIPHTGPV-NSL----AF--EFPWLVS  379 (520)
Q Consensus       311 ~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~----~~~~~~~~~~~~h~~~v-~~l----~~--~~~~l~s  379 (520)
                      +.  -......++|+|+|...++...|+.|.+||+.....    ......+.++..|..+- .+.    ..  ++++|++
T Consensus       327 v~--vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~  404 (595)
T 1fwx_A          327 PE--LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVC  404 (595)
T ss_dssp             CB--CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEE
T ss_pred             cC--CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEE
Confidence            32  345678999999995455667799999999987210    00114455555554432 111    11  3467777


Q ss_pred             EeC
Q 009993          380 AAG  382 (520)
Q Consensus       380 ~s~  382 (520)
                      +..
T Consensus       405 ~Nk  407 (595)
T 1fwx_A          405 LSK  407 (595)
T ss_dssp             EES
T ss_pred             cCC
Confidence            754

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.22  E-value=0.0029  Score=57.14  Aligned_cols=209  Identities=8%  Similarity=0.053  Sum_probs=120.3

Q ss_pred             ccEEEEEEccCCCEEE-EEeCCCeEEEEECCCCcEEEEeCC--CCceEEEEecCCCEEE-EEeCCCcEEEEEcccCccee
Q 009993          143 EAVLTVFVLASAKLLF-TSGYDSIVRMWHLEDGFSIASSKP--LGCTIRAVAADKKLLV-AGGTDGFIHCWRAVEVLPHL  218 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~-sgs~dg~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~l~-sg~~dg~i~vwd~~~~~~~~  218 (520)
                      ..+.++++++++..|+ +-..++.|.+++...+........  ....-.++.+++..|+ +-...+.|.+++......  
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~--  113 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR--  113 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE--
Confidence            4568999999665555 555578999999876654333322  2233345566655555 445567898888754311  


Q ss_pred             eeccCCccccceEEeccCCCCeEEEEEc--CCEEEEEec---CCeEEEEECCCCcEEEEee--eccCEEEEe--eCCCEE
Q 009993          219 FDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSW---DMTVRVWDRALLKCLKVLR--HSDWVYGLA--PHDTTV  289 (520)
Q Consensus       219 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~---dg~v~iwd~~~~~~~~~~~--~~~~v~~~~--~~~~~l  289 (520)
                                 .............++++  ++.|+.+..   .+.|..+++.... ...+.  .......++  +++..|
T Consensus       114 -----------~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~l  181 (267)
T 1npe_A          114 -----------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQL  181 (267)
T ss_dssp             -----------EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEE
T ss_pred             -----------EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEE
Confidence                       11111122456788884  466666654   3688888876432 22222  122344444  666666


Q ss_pred             EEEc--CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCc-CC
Q 009993          290 ASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT-GP  366 (520)
Q Consensus       290 ~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~-~~  366 (520)
                      +.+.  .+.|.++|+........+.  .......++.. .+.++++....+.|.++|..++      +.+..+.... ..
T Consensus       182 yv~d~~~~~I~~~~~~g~~~~~~~~--~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g------~~~~~i~~g~~~~  252 (267)
T 1npe_A          182 CWVDAGTHRAECLNPAQPGRRKVLE--GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAIS------KEMDTFHPHKQTR  252 (267)
T ss_dssp             EEEETTTTEEEEEETTEEEEEEEEE--CCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTT------EEEEEECCSSCCC
T ss_pred             EEEECCCCEEEEEecCCCceEEEec--CCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCC------CceEEEccccccc
Confidence            5555  6889999998654433332  22334566654 3444444445689999999887      4455543322 23


Q ss_pred             EEEEEecC
Q 009993          367 VNSLAFEF  374 (520)
Q Consensus       367 v~~l~~~~  374 (520)
                      ...+++.|
T Consensus       253 p~gi~~~~  260 (267)
T 1npe_A          253 LYGITIAL  260 (267)
T ss_dssp             CCCEEEEC
T ss_pred             cceeeecC
Confidence            45566544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.12  E-value=0.0012  Score=61.62  Aligned_cols=197  Identities=10%  Similarity=0.038  Sum_probs=111.9

Q ss_pred             EEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccc--cc--e--EEeccCCCCeEEEEEc--CCEEEEEecCCeEE
Q 009993          189 AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQ--NT--Q--FRLWEHEGPITSLALD--LTRIYSGSWDMTVR  260 (520)
Q Consensus       189 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~--~--~~~~~h~~~v~~l~~~--~~~l~s~s~dg~v~  260 (520)
                      ++.+++++++++..++.|..|+..++....+........  ..  .  .........+..++++  ...|+.+...+.|.
T Consensus        25 ~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~  104 (322)
T 2fp8_A           25 TFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLS  104 (322)
T ss_dssp             ECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEE
T ss_pred             EEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEE
Confidence            455778878888889999999876543222111000000  00  0  0000012357788885  46788887667788


Q ss_pred             EEECCCCcEEEEee-----eccCEEEEe--e-CCCEEEEEcC------------------CeEEEEECCCCeeeEEeecc
Q 009993          261 VWDRALLKCLKVLR-----HSDWVYGLA--P-HDTTVASTSG------------------SDVYIWDTNSGCLLTVVNGA  314 (520)
Q Consensus       261 iwd~~~~~~~~~~~-----~~~~v~~~~--~-~~~~l~~~~d------------------~~i~iwd~~~~~~~~~~~~~  314 (520)
                      .+|..++.......     .......+.  + ++++.++...                  +.|..+|..+++......  
T Consensus       105 ~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~--  182 (322)
T 2fp8_A          105 VVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK--  182 (322)
T ss_dssp             EECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE--
T ss_pred             EEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc--
Confidence            89877554222111     112345555  6 7777666432                  678999988776433322  


Q ss_pred             cccceEEEEecCCCCEEEEE-eCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeC---------
Q 009993          315 HVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG---------  382 (520)
Q Consensus       315 ~~~~i~~l~~s~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~---------  382 (520)
                      .......++++|+++.|+.+ ..++.|.+|++..... ........+   .+ ...+++++  ++.++...         
T Consensus       183 ~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-~~~~~~~~~---~g-P~gi~~d~~G~l~va~~~~~~~~~~~~  257 (322)
T 2fp8_A          183 ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-GTAEVLVKI---PN-PGNIKRNADGHFWVSSSEELDGNMHGR  257 (322)
T ss_dssp             EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-TCEEEEEEC---SS-EEEEEECTTSCEEEEEEEETTSSTTSC
T ss_pred             CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-CccceEEeC---CC-CCCeEECCCCCEEEEecCcccccccCC
Confidence            22345679999999866655 5568999999875321 111122222   23 67788865  44444433         


Q ss_pred             -CCcEEEEeCC
Q 009993          383 -DGKLSLIDVR  392 (520)
Q Consensus       383 -dg~i~vwd~~  392 (520)
                       .+.|..+|..
T Consensus       258 ~~~~v~~~d~~  268 (322)
T 2fp8_A          258 VDPKGIKFDEF  268 (322)
T ss_dssp             EEEEEEEECTT
T ss_pred             CccEEEEECCC
Confidence             3567777754

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.84  E-value=0.0086  Score=56.59  Aligned_cols=188  Identities=16%  Similarity=0.204  Sum_probs=124.5

Q ss_pred             CCeEEEEECCCCcEEEEeeeccCEEEEe-eCCCEEEEEcCCeEEEEECCCC-eeeEEeeccc----ccceEEEEecCCCC
Q 009993          256 DMTVRVWDRALLKCLKVLRHSDWVYGLA-PHDTTVASTSGSDVYIWDTNSG-CLLTVVNGAH----VGNTKSLARSHTGD  329 (520)
Q Consensus       256 dg~v~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~d~~i~iwd~~~~-~~~~~~~~~~----~~~i~~l~~s~~~~  329 (520)
                      ..++.++|+++.+.++.+.....|.-.. .+.+.|+..++..|+-|++... .+.+.+.. |    ...|.....+++.+
T Consensus        85 g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR-~~~L~~~QIInY~~d~~~k  163 (494)
T 1bpo_A           85 GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDR-HSSLAGCQIINYRTDAKQK  163 (494)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEEC-CGGGTTCEEEEEEECTTSS
T ss_pred             CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheec-chhcccceEEEEEECCCCC
Confidence            6899999999999999998777777777 7889999999999999999754 45555542 3    34677778889999


Q ss_pred             EEEEEe-------CCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-----CEEEEEeCC---CcEEEEeCCcc
Q 009993          330 FLFTGG-------EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-----PWLVSAAGD---GKLSLIDVRKL  394 (520)
Q Consensus       330 ~l~tg~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~l~s~s~d---g~i~vwd~~~~  394 (520)
                      +++..+       -.|.+.+|..+..       .-+.+.||.+.-..+..++     ..++-+...   +.+.|-++...
T Consensus       164 W~~l~GI~~~~~~v~G~mQLYS~er~-------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~  236 (494)
T 1bpo_A          164 WLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP  236 (494)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEESTTC-------CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCC
T ss_pred             eEEEEeecccCCcccceEEEeecccc-------ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCC
Confidence            877433       2477889998776       4566788888777777753     244444442   78999999653


Q ss_pred             cccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC--CEEEEecCCCeEEEEeCCchHhHHH
Q 009993          395 LRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQAFEIER  458 (520)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~v~iwd~~~~~~~~~  458 (520)
                      .... ....+.   ..++..+..   ....--.++..+.  ..+..-+.-|.|++||++++..+-.
T Consensus       237 ~~~~-~~f~kk---~vdv~fppe---~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~  295 (494)
T 1bpo_A          237 PTGN-QPFPKK---AVDVFFPPE---AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  295 (494)
T ss_dssp             CTTC-CCCCCE---EEECCCCTT---STTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ccCC-CCccce---eeeeeCCcc---cccCceeEEEecccCCEEEEEecCceEEEEecccceeeee
Confidence            1111 111111   111111111   1111122333334  3677777889999999999876543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.82  E-value=0.011  Score=54.82  Aligned_cols=188  Identities=12%  Similarity=0.171  Sum_probs=112.1

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe----cCCC---EEEEEe-C--CCcEEEEEcccCcceeeecc
Q 009993          153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA----ADKK---LLVAGG-T--DGFIHCWRAVEVLPHLFDIS  222 (520)
Q Consensus       153 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~----~~~~---~l~sg~-~--dg~i~vwd~~~~~~~~~~~~  222 (520)
                      ...++++....+-+.+||+ +|+.+..+......-..+.    ..+.   ++++.. .  +++|.+|++......+....
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~  117 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT  117 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence            4566777777889999999 8988888864222222222    2333   223333 3  57899998742211111110


Q ss_pred             CCccccceEEeccCCCCeEEEEE--c---CC-EEEEEecCCeEEEEECC-------CCcEEEEeeeccCEEEEe--eCCC
Q 009993          223 GSEKQNTQFRLWEHEGPITSLAL--D---LT-RIYSGSWDMTVRVWDRA-------LLKCLKVLRHSDWVYGLA--PHDT  287 (520)
Q Consensus       223 ~~~~~~~~~~~~~h~~~v~~l~~--~---~~-~l~s~s~dg~v~iwd~~-------~~~~~~~~~~~~~v~~~~--~~~~  287 (520)
                      ....  +   +..-...+..+++  +   +. ++++...+|.+..|++.       +.+.++++.....+..+.  +...
T Consensus       118 ~~~~--p---v~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g  192 (355)
T 3amr_A          118 DPDH--P---IATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYG  192 (355)
T ss_dssp             CTTS--C---EECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTT
T ss_pred             cccc--C---cCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCC
Confidence            0000  0   0001144555665  3   23 68888889999999882       346677777666666655  5567


Q ss_pred             EEEEEc-CCeEEEEECC-----CCeeeEEeecccc-cceEEEEe--cCCCC-EEEEEe-CCCeEEEEEcc
Q 009993          288 TVASTS-GSDVYIWDTN-----SGCLLTVVNGAHV-GNTKSLAR--SHTGD-FLFTGG-EDGAIHMYEII  346 (520)
Q Consensus       288 ~l~~~~-d~~i~iwd~~-----~~~~~~~~~~~~~-~~i~~l~~--s~~~~-~l~tg~-~dg~i~iwd~~  346 (520)
                      .|+.+. +..|..+|.+     +++.+..+..++- ..+..|++  .++++ +|++++ .+++..+||..
T Consensus       193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            777777 7668888855     3455555532332 36788887  45555 666665 57799999986

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.77  E-value=0.017  Score=53.78  Aligned_cols=239  Identities=13%  Similarity=0.048  Sum_probs=123.0

Q ss_pred             ccHHHhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC---CCCceEEEEe--cCCCEEEEEeCC
Q 009993          129 KSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK---PLGCTIRAVA--ADKKLLVAGGTD  203 (520)
Q Consensus       129 ~~W~~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~---~~~~~v~~~~--~~~~~l~sg~~d  203 (520)
                      +.|.............+.++.|.+ +..++ ++.++.|.. ..+.|+.-....   .+...+..+.  .++..+++ +.+
T Consensus        66 ~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~  141 (327)
T 2xbg_A           66 QTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMI-TNV  141 (327)
T ss_dssp             SSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEE-ETT
T ss_pred             CCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEE-eCC
Confidence            556654332223355788999976 44444 455665443 333343322221   1222334443  44444444 445


Q ss_pred             CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEE-EEC--CCCcEEEEeeeccC
Q 009993          204 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRV-WDR--ALLKCLKVLRHSDW  278 (520)
Q Consensus       204 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~i-wd~--~~~~~~~~~~~~~~  278 (520)
                      |.|  |...++.         ...  .....++...+..+.+  ++.+++.+ .+|.+.. +|-  .+.+.+. ......
T Consensus       142 g~v--~~S~DgG---------~tW--~~~~~~~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~d~gG~tW~~~~-~~~~~~  206 (327)
T 2xbg_A          142 GAI--YRTKDSG---------KNW--QALVQEAIGVMRNLNRSPSGEYVAVS-SRGSFYSTWEPGQTAWEPHN-RTTSRR  206 (327)
T ss_dssp             CCE--EEESSTT---------SSE--EEEECSCCCCEEEEEECTTSCEEEEE-TTSSEEEEECTTCSSCEEEE-CCSSSC
T ss_pred             ccE--EEEcCCC---------CCC--EEeecCCCcceEEEEEcCCCcEEEEE-CCCcEEEEeCCCCCceeECC-CCCCCc
Confidence            644  3222211         111  1112234557888888  34455444 4454443 442  2333332 123445


Q ss_pred             EEEEe--eCCCEEEEEcCCeEEEEECCCCeeeEEeecc---cccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccc
Q 009993          279 VYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNGA---HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN  353 (520)
Q Consensus       279 v~~~~--~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~  353 (520)
                      +..+.  +++..++++.+|.+++.+...++.-..+..+   ....+.++.+.+++..++++ .+|.| ++..+.+.   .
T Consensus       207 ~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~---t  281 (327)
T 2xbg_A          207 LHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQ---T  281 (327)
T ss_dssp             EEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTS---S
T ss_pred             cceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCc---c
Confidence            55655  6777777777888887754434443333222   22358899999887776665 46766 34444441   1


Q ss_pred             eeeeeeecCCcCCEEEEEe-cCCEEEEEeCCCcEEEEeC
Q 009993          354 VLLVATWIPHTGPVNSLAF-EFPWLVSAAGDGKLSLIDV  391 (520)
Q Consensus       354 ~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~vwd~  391 (520)
                      ...+.........+.++.| ++..+++++.+|.|.-++-
T Consensus       282 W~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          282 WQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT  320 (327)
T ss_dssp             CEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred             cEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence            1112111123356788888 5677888889998877764

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.74  E-value=0.0098  Score=54.83  Aligned_cols=224  Identities=11%  Similarity=0.025  Sum_probs=118.5

Q ss_pred             CCEEEEEeC--CCeEEEEECCCCcEEE--EeCCCCceEEEEecCCCEEEEEeCC----CcEEEEEcccCcceeeeccCCc
Q 009993          154 AKLLFTSGY--DSIVRMWHLEDGFSIA--SSKPLGCTIRAVAADKKLLVAGGTD----GFIHCWRAVEVLPHLFDISGSE  225 (520)
Q Consensus       154 ~~~l~sgs~--dg~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~sg~~d----g~i~vwd~~~~~~~~~~~~~~~  225 (520)
                      +.+++.|+.  ...+.+||..+++-..  .+........+...++..++.|+.+    ..+.++|..+..-..       
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~-------   84 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYS-------   84 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEE-------
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEE-------
Confidence            345556654  3568899988765322  2221111122233567777787765    567788876653211       


Q ss_pred             cccceEEeccCCCCeEEEEEcCCEEEEEecC------CeEEEEECCCCcEEEEeee---ccCEEEEeeCCCEEEEEc-C-
Q 009993          226 KQNTQFRLWEHEGPITSLALDLTRIYSGSWD------MTVRVWDRALLKCLKVLRH---SDWVYGLAPHDTTVASTS-G-  294 (520)
Q Consensus       226 ~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~l~~~~-d-  294 (520)
                          ...+......-....+++..++.|+.+      ..+.+||..+.+-...-..   ...-.++..++++++.|+ + 
T Consensus        85 ----~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~  160 (306)
T 3ii7_A           85 ----KLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLG  160 (306)
T ss_dssp             ----EECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEES
T ss_pred             ----CCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCC
Confidence                111111122223334477777777765      4688999887654333221   111122335667666665 2 


Q ss_pred             --------CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCC-----CeEEEEEcccCccccceeeeeeec
Q 009993          295 --------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-----GAIHMYEIINDCTEANVLLVATWI  361 (520)
Q Consensus       295 --------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~  361 (520)
                              ..+.+||+.+.+-...-.......-.+++.. ++.+++.|+.+     ..+.+||+.+..-    ..+..+.
T Consensus       161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W----~~~~~~p  235 (306)
T 3ii7_A          161 NNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEW----KMVSPMP  235 (306)
T ss_dssp             CTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEE----EECCCCS
T ss_pred             CCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcE----EECCCCC
Confidence                    3488999988753222111111111122222 56677777654     3588899877621    2222222


Q ss_pred             CCcCCEEEEEecCCEEEEEeCC-----CcEEEEeCCc
Q 009993          362 PHTGPVNSLAFEFPWLVSAAGD-----GKLSLIDVRK  393 (520)
Q Consensus       362 ~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~  393 (520)
                      .......++.+++..++.|+.+     ..+.+||+.+
T Consensus       236 ~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~  272 (306)
T 3ii7_A          236 WKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTET  272 (306)
T ss_dssp             CCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTT
T ss_pred             CCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCC
Confidence            2223344555677777888754     4678888876

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.74  E-value=0.0065  Score=55.86  Aligned_cols=187  Identities=12%  Similarity=0.046  Sum_probs=99.2

Q ss_pred             EEEcCCEEEEEecC-----CeEEEEECCCCc---EEEEee--e-ccCEEEEeeCCCEEEEEc-C-----CeEEEEECCCC
Q 009993          243 LALDLTRIYSGSWD-----MTVRVWDRALLK---CLKVLR--H-SDWVYGLAPHDTTVASTS-G-----SDVYIWDTNSG  305 (520)
Q Consensus       243 l~~~~~~l~s~s~d-----g~v~iwd~~~~~---~~~~~~--~-~~~v~~~~~~~~~l~~~~-d-----~~i~iwd~~~~  305 (520)
                      +..++..++.|+.+     ..+.+||..+.+   -...-.  . ...-..+..++.+++.|+ +     ..+.+||+.+.
T Consensus        59 ~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~  138 (301)
T 2vpj_A           59 VSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNID  138 (301)
T ss_dssp             EEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             EEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCC
Confidence            34466777777755     468999988765   322211  1 111122335677766665 3     36899999876


Q ss_pred             eeeE--EeecccccceEEEEecCCCCEEEEEeCC-----CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEE
Q 009993          306 CLLT--VVNGAHVGNTKSLARSHTGDFLFTGGED-----GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLV  378 (520)
Q Consensus       306 ~~~~--~~~~~~~~~i~~l~~s~~~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~  378 (520)
                      +-..  .+..+.. .-.++.+  ++.+++.|+.+     ..+.+||+.+..-    ..+..+.........+.+++..++
T Consensus       139 ~W~~~~~~p~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~~~~i~v  211 (301)
T 2vpj_A          139 QWSMLGDMQTARE-GAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHW----TNVTPMATKRSGAGVALLNDHIYV  211 (301)
T ss_dssp             EEEEEEECSSCCB-SCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE----EEECCCSSCCBSCEEEEETTEEEE
T ss_pred             eEEECCCCCCCcc-cceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcE----EeCCCCCcccccceEEEECCEEEE
Confidence            5332  2221111 1112222  66777777654     4588899877621    222222222222344555667777


Q ss_pred             EEeCC-----CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCC-----CeEEEE
Q 009993          379 SAAGD-----GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEE-----GIVRIW  448 (520)
Q Consensus       379 s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~D-----g~v~iw  448 (520)
                      .|+.+     ..+.+||+.+..-             ..+.........|.    ++..++..++.||.+     ..|.+|
T Consensus       212 ~GG~~~~~~~~~v~~yd~~~~~W-------------~~~~~~p~~r~~~~----~~~~~~~i~v~GG~~~~~~~~~v~~y  274 (301)
T 2vpj_A          212 VGGFDGTAHLSSVEAYNIRTDSW-------------TTVTSMTTPRCYVG----ATVLRGRLYAIAGYDGNSLLSSIECY  274 (301)
T ss_dssp             ECCBCSSSBCCCEEEEETTTTEE-------------EEECCCSSCCBSCE----EEEETTEEEEECCBCSSSBEEEEEEE
T ss_pred             EeCCCCCcccceEEEEeCCCCcE-------------EECCCCCCccccee----EEEECCEEEEEcCcCCCcccccEEEE
Confidence            77764     4688999876321             11111111112222    233466677778765     357788


Q ss_pred             eCCch
Q 009993          449 NFSQA  453 (520)
Q Consensus       449 d~~~~  453 (520)
                      |.++.
T Consensus       275 d~~~~  279 (301)
T 2vpj_A          275 DPIID  279 (301)
T ss_dssp             ETTTT
T ss_pred             cCCCC
Confidence            87754

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.74  E-value=0.014  Score=53.71  Aligned_cols=223  Identities=12%  Similarity=0.090  Sum_probs=115.9

Q ss_pred             CCEEEEEeCC----CeEEEEECCCCcEEEE--eCCCCceEEEEecCCCEEEEEeCCC-----cEEEEEcccCcceeeecc
Q 009993          154 AKLLFTSGYD----SIVRMWHLEDGFSIAS--SKPLGCTIRAVAADKKLLVAGGTDG-----FIHCWRAVEVLPHLFDIS  222 (520)
Q Consensus       154 ~~~l~sgs~d----g~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~sg~~dg-----~i~vwd~~~~~~~~~~~~  222 (520)
                      +.+++.|+.+    ..+..||+.+.+-...  ++...........++..++.|+.++     .+.+||..+..-...   
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~---   92 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV---   92 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEE---
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeC---
Confidence            4556666643    3578889887653221  2211111112234677777777553     477788766532111   


Q ss_pred             CCccccceEEeccCCCCeEEEEEcCCEEEEEecCC-----eEEEEECCCCcEEEEeeec---cCEEEEeeCCCEEEEEc-
Q 009993          223 GSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDM-----TVRVWDRALLKCLKVLRHS---DWVYGLAPHDTTVASTS-  293 (520)
Q Consensus       223 ~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg-----~v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~l~~~~-  293 (520)
                              ..+......-....+++..++.|+.++     .+.+||..+.+-...-..+   ....++..++++++.|+ 
T Consensus        93 --------~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~  164 (302)
T 2xn4_A           93 --------ANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGY  164 (302)
T ss_dssp             --------CCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCE
T ss_pred             --------CCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCC
Confidence                    111111122233344777777777653     5788898876543332211   11122335666666665 


Q ss_pred             C-------CeEEEEECCCCeeeEE--eecccccceEEEEecCCCCEEEEEeCC-----CeEEEEEcccCccccceeeeee
Q 009993          294 G-------SDVYIWDTNSGCLLTV--VNGAHVGNTKSLARSHTGDFLFTGGED-----GAIHMYEIINDCTEANVLLVAT  359 (520)
Q Consensus       294 d-------~~i~iwd~~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~~~  359 (520)
                      +       ..+.+||+.+.+-...  +..+. .....+.+  ++.+++.|+.+     ..+.+||+.+..-    ..+..
T Consensus       165 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~~~~  237 (302)
T 2xn4_A          165 DVASRQCLSTVECYNATTNEWTYIAEMSTRR-SGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAW----RQVAD  237 (302)
T ss_dssp             ETTTTEECCCEEEEETTTTEEEEECCCSSCC-BSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEE----EEECC
T ss_pred             CCCCCccccEEEEEeCCCCcEEECCCCcccc-ccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCE----eeCCC
Confidence            2       3488999987753322  21111 11122222  56777777764     3688999877521    12222


Q ss_pred             ecCCcCCEEEEEecCCEEEEEeCCC-----cEEEEeCCcc
Q 009993          360 WIPHTGPVNSLAFEFPWLVSAAGDG-----KLSLIDVRKL  394 (520)
Q Consensus       360 ~~~h~~~v~~l~~~~~~l~s~s~dg-----~i~vwd~~~~  394 (520)
                      +.........+.+++..++.|+.++     .+.+||+.+.
T Consensus       238 ~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          238 MNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             CSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence            2111122234455667777777653     4889998763

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.73  E-value=0.03  Score=52.16  Aligned_cols=239  Identities=12%  Similarity=0.007  Sum_probs=120.3

Q ss_pred             CcccHHHhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC----CCCceEEEEecCCCEEEEEeC
Q 009993          127 DDKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK----PLGCTIRAVAADKKLLVAGGT  202 (520)
Q Consensus       127 ~~~~W~~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~l~sg~~  202 (520)
                      ....|+....   .-...+.+|.|.+++..+++ +.+|.| +...+.|+.-....    .....+.++..++..++.++.
T Consensus        23 ~g~~W~~~~~---~~~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~   97 (327)
T 2xbg_A           23 DYNPWEAIQL---PTTATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGE   97 (327)
T ss_dssp             SSCCEEEEEC---SCSSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEE
T ss_pred             CCCCceEeec---CCCCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEEC
Confidence            4466765431   23457999999877777774 557755 33334443222211    123345555533344555556


Q ss_pred             CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee--eccCE
Q 009993          203 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWV  279 (520)
Q Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v  279 (520)
                      +|.|.  ...++.         ...........+.+.+..+.+ ++..++.++.+|.|.. ....++.-....  ....+
T Consensus        98 ~g~i~--~S~DgG---------~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~  165 (327)
T 2xbg_A           98 PPIML--HTTDGG---------QSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVM  165 (327)
T ss_dssp             TTEEE--EESSTT---------SSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCE
T ss_pred             CCeEE--EECCCC---------CCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcce
Confidence            66443  332221         111111111112344666766 4555555555665432 122233333322  34456


Q ss_pred             EEEe--eCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeee
Q 009993          280 YGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV  357 (520)
Q Consensus       280 ~~~~--~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~  357 (520)
                      ..+.  +++.+++++.++.+..-+-..+..-..+.......+..+.+.+++..++ ++.+|.+++.+...+..   ...+
T Consensus       166 ~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~t---W~~~  241 (327)
T 2xbg_A          166 RNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSEN---WGEL  241 (327)
T ss_dssp             EEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEE---ECCC
T ss_pred             EEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCe---eEec
Confidence            6665  6677887777666555432212222222234566788999999887654 45678877764332311   0111


Q ss_pred             eee-cCCcCCEEEEEecC-CEEEEEeCCCcE
Q 009993          358 ATW-IPHTGPVNSLAFEF-PWLVSAAGDGKL  386 (520)
Q Consensus       358 ~~~-~~h~~~v~~l~~~~-~~l~s~s~dg~i  386 (520)
                      ..- ..+...+.++.+.+ ..++.++.+|.|
T Consensus       242 ~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i  272 (327)
T 2xbg_A          242 LSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL  272 (327)
T ss_dssp             BCTTSSCCSCEEEEEESSSSCEEEEESTTCE
T ss_pred             cCCcccCCcceEEEEecCCCEEEEEeCCCeE
Confidence            110 01234588898864 455555667776

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.72  E-value=0.001  Score=68.90  Aligned_cols=234  Identities=7%  Similarity=-0.048  Sum_probs=121.6

Q ss_pred             cEEEEEEccCCCEEEEEeC-CCeEEEEECCCCcEEEE--eCCCC-ceEEEEecCCCEEEEEe-CC-----CcEEEEEccc
Q 009993          144 AVLTVFVLASAKLLFTSGY-DSIVRMWHLEDGFSIAS--SKPLG-CTIRAVAADKKLLVAGG-TD-----GFIHCWRAVE  213 (520)
Q Consensus       144 ~V~~l~~~~~~~~l~sgs~-dg~v~vwd~~~~~~~~~--~~~~~-~~v~~~~~~~~~l~sg~-~d-----g~i~vwd~~~  213 (520)
                      ...++++.+++++++.|+. +..+.+||..+++-...  +.... ....++.++++.++.|+ .+     ..+.+||..+
T Consensus       244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence            3345677789999999984 46899999887643322  22111 12223336899999988 44     5688999877


Q ss_pred             CcceeeeccCCccccce--EEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee-ec---------cCEE
Q 009993          214 VLPHLFDISGSEKQNTQ--FRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HS---------DWVY  280 (520)
Q Consensus       214 ~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~---------~~v~  280 (520)
                      ..-..............  .....+.+.+..+.. ++..+. ......+..||..+........ ..         ..-.
T Consensus       324 ~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~-~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~  402 (656)
T 1k3i_A          324 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQ-AGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN  402 (656)
T ss_dssp             TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEE-CCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred             CcceeCCCccccccccccccceeecCCceEEEECCCCcEEE-ecCccceeeeecCCcceeecCCccccccccCCCCCCCc
Confidence            54221100000000000  000011222222222 222222 2223467889988776444332 11         1122


Q ss_pred             EEe---eCCCEEEEEc-CC-----------eEEEEECCCCeeeEEe--ecccccceEEEEecCCCCEEEEEeCC------
Q 009993          281 GLA---PHDTTVASTS-GS-----------DVYIWDTNSGCLLTVV--NGAHVGNTKSLARSHTGDFLFTGGED------  337 (520)
Q Consensus       281 ~~~---~~~~~l~~~~-d~-----------~i~iwd~~~~~~~~~~--~~~~~~~i~~l~~s~~~~~l~tg~~d------  337 (520)
                      ++.   .++++++.|+ ++           .+.+||..+..-....  .......-.+++..|++++++.|+.+      
T Consensus       403 av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~  482 (656)
T 1k3i_A          403 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFE  482 (656)
T ss_dssp             EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTC
T ss_pred             eEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcC
Confidence            222   3677777766 32           6888898876544332  11112222345667899999998864      


Q ss_pred             -----CeEEEEEcccCccccceeeeeeecCCcCCEEEEEe--cCCEEEEEeC
Q 009993          338 -----GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWLVSAAG  382 (520)
Q Consensus       338 -----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~  382 (520)
                           ..+.+||..+..-    ..+..+........+..+  +++.++.|+.
T Consensus       483 ~~~~~~~v~~ydp~t~~W----~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          483 DSTPVFTPEIYVPEQDTF----YKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCSBCCCCEEEEGGGTEE----EECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCcccceEEEcCCCCce----eecCCCCCccccccHhhcCCCcEEEecCCC
Confidence                 4689999877621    112212111122223334  6678888875

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.72  E-value=0.029  Score=51.65  Aligned_cols=232  Identities=13%  Similarity=-0.022  Sum_probs=127.1

Q ss_pred             CCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEcC-C--eEEEEECCCCeeeEE
Q 009993          238 GPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTSG-S--DVYIWDTNSGCLLTV  310 (520)
Q Consensus       238 ~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~d-~--~i~iwd~~~~~~~~~  310 (520)
                      .....+++  +++.+++-..++.|..||... .....+........+.  ++++++++... .  .|..+|..+++....
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~  110 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  110 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence            55778888  456555555789999999865 3444444444566665  67886666542 2  477788888775433


Q ss_pred             eecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccc-e-eeee--eecCCcCCEEEEEecCCEEE-EEeCCCc
Q 009993          311 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN-V-LLVA--TWIPHTGPVNSLAFEFPWLV-SAAGDGK  385 (520)
Q Consensus       311 ~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~-~-~~~~--~~~~h~~~v~~l~~~~~~l~-s~s~dg~  385 (520)
                      ...........++..+++..+++-..++.|+++|...+..... . ....  .........+.+..++.+|+ +-...+.
T Consensus       111 ~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~  190 (306)
T 2p4o_A          111 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKML  190 (306)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTE
T ss_pred             EeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCE
Confidence            3211222334555555555555555688999999765310000 0 0000  00111224556655665554 4456789


Q ss_pred             EEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcc
Q 009993          386 LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRG  465 (520)
Q Consensus       386 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~  465 (520)
                      |.++++.....   ... .  ..+.         ......-++++.++.++++....+.|.+++.. +....     ...
T Consensus       191 I~~~~~~~~g~---~~~-~--~~~~---------~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~-----~~~  249 (306)
T 2p4o_A          191 LLRIPVDSTDK---PGE-P--EIFV---------EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTI-----IAQ  249 (306)
T ss_dssp             EEEEEBCTTSC---BCC-C--EEEE---------ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEE-----EEC
T ss_pred             EEEEEeCCCCC---CCc-c--EEEe---------ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEE-----Eee
Confidence            99999874100   000 0  0000         01112335667777777777777889999864 32100     000


Q ss_pred             cccchhhhhccceeeec---cCCCcccccccc
Q 009993          466 IRLENRMRRRKLQTEMS---SKGGRTDQCSVA  494 (520)
Q Consensus       466 ~~~~~~~~~~~~~~~~s---~~g~~~~~~s~~  494 (520)
                      .  . ..-..+..++|.   ||++.+..+...
T Consensus       250 ~--~-~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          250 A--E-QGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             G--G-GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             c--c-cccCCceEEEEecccCCCCEEEEECCC
Confidence            0  0 012346789998   898888776654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.71  E-value=0.038  Score=52.82  Aligned_cols=194  Identities=8%  Similarity=-0.057  Sum_probs=109.8

Q ss_pred             CCCeEEEEEc--CCEEE-EEecCCeEEEEECCCCcEEEEee-eccCE--EEEeeCCCEE-EEEc-CCeEEEEECCCCeee
Q 009993          237 EGPITSLALD--LTRIY-SGSWDMTVRVWDRALLKCLKVLR-HSDWV--YGLAPHDTTV-ASTS-GSDVYIWDTNSGCLL  308 (520)
Q Consensus       237 ~~~v~~l~~~--~~~l~-s~s~dg~v~iwd~~~~~~~~~~~-~~~~v--~~~~~~~~~l-~~~~-d~~i~iwd~~~~~~~  308 (520)
                      ...+..++|+  .+.|+ +-...+.|..++.........+. .....  .++.+.+..| ++-. .+.|.+.++......
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~  194 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  194 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence            4457788884  35554 44467889999988765444333 11122  3444444444 4444 678999888755433


Q ss_pred             EEeecccccceEEEEecCCCCEEEEEeC-C-CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEE-eCC
Q 009993          309 TVVNGAHVGNTKSLARSHTGDFLFTGGE-D-GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSA-AGD  383 (520)
Q Consensus       309 ~~~~~~~~~~i~~l~~s~~~~~l~tg~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~-s~d  383 (520)
                      ..+. ........+++.|.+..|+.... . +.|..+++....      ........-...+.|++++  ..|+.+ +..
T Consensus       195 ~l~~-~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~------~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~  267 (386)
T 3v65_B          195 VLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKH  267 (386)
T ss_dssp             EEEC-SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS------CEEEECSSCSCEEEEEEEGGGTEEEEEETTT
T ss_pred             Eeec-CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC------cEEEEECCCCCeeeEEEeCCCCEEEEEECCC
Confidence            3332 33456789999997776655443 4 678888876542      1112223344578999974  455444 556


Q ss_pred             CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHh
Q 009993          384 GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE  455 (520)
Q Consensus       384 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~  455 (520)
                      +.|..+|+.....          ..+....      ..+... +++ ..+..+++-...+.|..++..++..
T Consensus       268 ~~I~~~d~dG~~~----------~~~~~~~------~~~P~g-iav-~~~~ly~td~~~~~V~~~~~~~G~~  321 (386)
T 3v65_B          268 HVIERANLDGSHR----------KAVISQG------LPHPFA-ITV-FEDSLYWTDWHTKSINSANKFTGKN  321 (386)
T ss_dssp             TEEEEECTTSCSC----------EEEECSS------CSSEEE-EEE-ETTEEEEEETTTTEEEEEETTTCCS
T ss_pred             CEEEEEeCCCCee----------EEEEECC------CCCceE-EEE-ECCEEEEeeCCCCeEEEEECCCCcc
Confidence            7899998864210          0000000      112221 222 3334666666778888888655543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.70  E-value=0.06  Score=59.00  Aligned_cols=181  Identities=12%  Similarity=-0.001  Sum_probs=96.4

Q ss_pred             cccEEEEEEccC------CCEEEEEeC-CCeEEEEECCCCcEEEEeCC-CCceE--EEEe--cCCCEEEEEeCCCcEEEE
Q 009993          142 TEAVLTVFVLAS------AKLLFTSGY-DSIVRMWHLEDGFSIASSKP-LGCTI--RAVA--ADKKLLVAGGTDGFIHCW  209 (520)
Q Consensus       142 ~~~V~~l~~~~~------~~~l~sgs~-dg~v~vwd~~~~~~~~~~~~-~~~~v--~~~~--~~~~~l~sg~~dg~i~vw  209 (520)
                      .+.|.|+++.|.      +++++.|.. |++|+|+++.+.+.+....- .....  ..+.  ....+|..|-.||.+..+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            457999999863      369999997 99999999987766543221 11111  1222  234578899999998766


Q ss_pred             EcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCE-EEEEecCCeEEEEECCCCcEEEEeeeccCE---EEEe
Q 009993          210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTR-IYSGSWDMTVRVWDRALLKCLKVLRHSDWV---YGLA  283 (520)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~-l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v---~~~~  283 (520)
                      .+......+.+        ......| ..++.-..+  .+.. ++++| +....++--+ ++....--....+   ..+.
T Consensus       633 ~~d~~tg~l~d--------~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~  701 (1158)
T 3ei3_A          633 GLNIETGLLSD--------RKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNVNLKEVNYMCPLN  701 (1158)
T ss_dssp             EECTTTCCEEE--------EEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEEBSSSCCCEEEEEC
T ss_pred             EEcCCCCcccc--------ceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEeccChHHhceEeccC
Confidence            65432111111        1111222 234443333  2322 33333 3444444333 3322211122223   3333


Q ss_pred             --eCCCEEEEEcCCeEEEEECCCCe--eeEEeecccccceEEEEecCCCCEEEEEe
Q 009993          284 --PHDTTVASTSGSDVYIWDTNSGC--LLTVVNGAHVGNTKSLARSHTGDFLFTGG  335 (520)
Q Consensus       284 --~~~~~l~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~i~~l~~s~~~~~l~tg~  335 (520)
                        ....-++..+++.++|..+...+  .++.+.  -...+..++++|..+.++.+.
T Consensus       702 se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ip--L~~Tprri~y~~~~~~~~v~~  755 (1158)
T 3ei3_A          702 SDGYPDSLALANNSTLTIGTIDEIQKLHIRTVP--LYESPRKICYQEVSQCFGVLS  755 (1158)
T ss_dssp             CSSSTTEEEEECSSCEEEEEECCSSSEEEEEEE--CSSEEEEEEEEGGGTEEEEEE
T ss_pred             cccCCCcEEEEcCCceEEEEecccCCeeEEEEe--CCCCceEEEEcCCCCEEEEEE
Confidence              12455666666778888775432  333443  345788888888877655543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.66  E-value=0.0023  Score=67.34  Aligned_cols=193  Identities=12%  Similarity=0.037  Sum_probs=106.9

Q ss_pred             ccccc-cEEEEEEc-cCCCEEEEEeC-C----CeEEEEECCCC-cEEEE-eCCCCceEEEEecCCCEEEEEeCC-----C
Q 009993          139 YGHTE-AVLTVFVL-ASAKLLFTSGY-D----SIVRMWHLEDG-FSIAS-SKPLGCTIRAVAADKKLLVAGGTD-----G  204 (520)
Q Consensus       139 ~~h~~-~V~~l~~~-~~~~~l~sgs~-d----g~v~vwd~~~~-~~~~~-~~~~~~~v~~~~~~~~~l~sg~~d-----g  204 (520)
                      ++|.- .+...+|| |||++||-+.. +    .+|+++|+.++ +.+.. +... ..-..+++|++.|+....|     .
T Consensus       169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~-~~~~~WspDg~~l~y~~~d~~~~~~  247 (751)
T 2xe4_A          169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGT-NGEIVWGPDHTSLFYVTKDETLREN  247 (751)
T ss_dssp             TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEE-CSCCEECSSTTEEEEEEECTTCCEE
T ss_pred             cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCc-eeeEEEecCCCEEEEEEECCCCCCC
Confidence            34543 68889999 99998885432 2    35999999998 63211 1110 1123577999888777665     2


Q ss_pred             cEEEEEcccCcceeeeccCCccccceEEec-cCCCCeEEEEE--cCCEEEEEec---CCeEEEEECCCCc-EE--EEe-e
Q 009993          205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLAL--DLTRIYSGSW---DMTVRVWDRALLK-CL--KVL-R  274 (520)
Q Consensus       205 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s~s~---dg~v~iwd~~~~~-~~--~~~-~  274 (520)
                      .|.++++.++..           .....+. ........+.|  |+++|+..+.   ...|.++|+.++. ..  ..+ .
T Consensus       248 ~v~~~~lgt~~~-----------~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~  316 (751)
T 2xe4_A          248 KVWRHVMGKLQS-----------EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP  316 (751)
T ss_dssp             EEEEEETTSCGG-----------GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC
T ss_pred             EEEEEECCCCch-----------hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec
Confidence            467777655421           1111111 22234556677  7787776553   3468888988752 12  333 2


Q ss_pred             -eccCEEEEe-eCCCEEEEEc--C----CeEEEEECCCC-eeeE-EeecccccceEEEEecCCCCEEEEEeCCCeEEEEE
Q 009993          275 -HSDWVYGLA-PHDTTVASTS--G----SDVYIWDTNSG-CLLT-VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE  344 (520)
Q Consensus       275 -~~~~v~~~~-~~~~~l~~~~--d----~~i~iwd~~~~-~~~~-~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd  344 (520)
                       ......++. ..+..|+..+  +    ..|..+|+.++ .... .+.......+..+.+. .+.++++...+|..++|-
T Consensus       317 ~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          317 REKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             CCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEE
T ss_pred             CCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence             344555555 4566555443  3    25778887753 2222 2321112234555554 334556677778655443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.65  E-value=0.0096  Score=54.75  Aligned_cols=189  Identities=13%  Similarity=0.090  Sum_probs=98.1

Q ss_pred             EEEcCCEEEEEecC-----CeEEEEECCCCcEEEEee--e-ccCEEEEeeCCCEEEEEc-C-----CeEEEEECCCCeee
Q 009993          243 LALDLTRIYSGSWD-----MTVRVWDRALLKCLKVLR--H-SDWVYGLAPHDTTVASTS-G-----SDVYIWDTNSGCLL  308 (520)
Q Consensus       243 l~~~~~~l~s~s~d-----g~v~iwd~~~~~~~~~~~--~-~~~v~~~~~~~~~l~~~~-d-----~~i~iwd~~~~~~~  308 (520)
                      +..++..++.|+.+     ..+.+||..+.+-...-.  . ...-..+..++.+++.|+ +     ..+.+||+.+.+-.
T Consensus        58 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~  137 (302)
T 2xn4_A           58 VYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWF  137 (302)
T ss_dssp             EEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred             EEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence            33466777777755     358889988765433322  1 111222335677777666 4     35889999877533


Q ss_pred             EEeecccccceEEEEecCCCCEEEEEeCC-------CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEe
Q 009993          309 TVVNGAHVGNTKSLARSHTGDFLFTGGED-------GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAA  381 (520)
Q Consensus       309 ~~~~~~~~~~i~~l~~s~~~~~l~tg~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s  381 (520)
                      ..-.......-.+++. -++.+++.|+.+       ..+.+||+.+..-    ..+..+.........+.+++..++.|+
T Consensus       138 ~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG  212 (302)
T 2xn4_A          138 HVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEW----TYIAEMSTRRSGAGVGVLNNLLYAVGG  212 (302)
T ss_dssp             EECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEE----EEECCCSSCCBSCEEEEETTEEEEECC
T ss_pred             ecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcE----EECCCCccccccccEEEECCEEEEECC
Confidence            2211111111112222 256666666543       3488899876621    122222222222344555677777777


Q ss_pred             CC-----CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCC-----eEEEEeCC
Q 009993          382 GD-----GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEG-----IVRIWNFS  451 (520)
Q Consensus       382 ~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg-----~v~iwd~~  451 (520)
                      .+     ..+.+||+.+..-             ..+.........|.    ++..++..++.||.++     .|.+||..
T Consensus       213 ~~~~~~~~~~~~yd~~~~~W-------------~~~~~~~~~r~~~~----~~~~~~~i~v~GG~~~~~~~~~v~~yd~~  275 (302)
T 2xn4_A          213 HDGPLVRKSVEVYDPTTNAW-------------RQVADMNMCRRNAG----VCAVNGLLYVVGGDDGSCNLASVEYYNPT  275 (302)
T ss_dssp             BSSSSBCCCEEEEETTTTEE-------------EEECCCSSCCBSCE----EEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred             CCCCcccceEEEEeCCCCCE-------------eeCCCCCCccccCe----EEEECCEEEEECCcCCCcccccEEEEcCC
Confidence            64     3688899876311             11111111112222    2334666778887654     47888887


Q ss_pred             ch
Q 009993          452 QA  453 (520)
Q Consensus       452 ~~  453 (520)
                      +.
T Consensus       276 ~~  277 (302)
T 2xn4_A          276 TD  277 (302)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.63  E-value=0.011  Score=54.29  Aligned_cols=227  Identities=15%  Similarity=0.113  Sum_probs=117.7

Q ss_pred             CCCEEEEEe-CC-----CeEEEEECCCCcEEE--EeCCCCceEEEEecCCCEEEEEeCC-----CcEEEEEcccCcceee
Q 009993          153 SAKLLFTSG-YD-----SIVRMWHLEDGFSIA--SSKPLGCTIRAVAADKKLLVAGGTD-----GFIHCWRAVEVLPHLF  219 (520)
Q Consensus       153 ~~~~l~sgs-~d-----g~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~~~~~  219 (520)
                      ++.+++.|+ .+     ..+.+||..+++-..  .+........+...++..++.|+.+     ..+.+||..+.....+
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W   93 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW   93 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence            455666666 32     368889988765322  1221111122233567777777765     4588888776541001


Q ss_pred             eccCCccccceEEeccCCCCeEEEEEcCCEEEEEecC-----CeEEEEECCCCcEEEEee--ec-cCEEEEeeCCCEEEE
Q 009993          220 DISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD-----MTVRVWDRALLKCLKVLR--HS-DWVYGLAPHDTTVAS  291 (520)
Q Consensus       220 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~v~iwd~~~~~~~~~~~--~~-~~v~~~~~~~~~l~~  291 (520)
                      .        ....+......-..+.+++..++.|+.+     ..+.+||..+.+-...-.  .. ..-.++..++++++.
T Consensus        94 ~--------~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~  165 (301)
T 2vpj_A           94 Y--------SVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCL  165 (301)
T ss_dssp             E--------EECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEE
T ss_pred             E--------ECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEE
Confidence            0        1111111112222333466667777654     368899988765433222  11 111223356777776


Q ss_pred             Ec-C-----CeEEEEECCCCeeeEEeecccc-cceEEEEecCCCCEEEEEeCC-----CeEEEEEcccCccccceeeeee
Q 009993          292 TS-G-----SDVYIWDTNSGCLLTVVNGAHV-GNTKSLARSHTGDFLFTGGED-----GAIHMYEIINDCTEANVLLVAT  359 (520)
Q Consensus       292 ~~-d-----~~i~iwd~~~~~~~~~~~~~~~-~~i~~l~~s~~~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~~~  359 (520)
                      |+ +     ..+.+||+.+.+-...-..... .....+.+  ++.+++.|+.+     ..+.+||+.+..-    ..+..
T Consensus       166 GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W----~~~~~  239 (301)
T 2vpj_A          166 GGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSW----TTVTS  239 (301)
T ss_dssp             CCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE----EEECC
T ss_pred             CCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcE----EECCC
Confidence            65 3     4589999988753322111111 11122222  56777777764     4688999877631    22222


Q ss_pred             ecCCcCCEEEEEecCCEEEEEeCC-----CcEEEEeCCc
Q 009993          360 WIPHTGPVNSLAFEFPWLVSAAGD-----GKLSLIDVRK  393 (520)
Q Consensus       360 ~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~  393 (520)
                      +.........+.+++..++.|+.+     ..|.+||+.+
T Consensus       240 ~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~  278 (301)
T 2vpj_A          240 MTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPII  278 (301)
T ss_dssp             CSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred             CCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCC
Confidence            222222234455566777777655     3577888765

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.62  E-value=0.018  Score=53.08  Aligned_cols=226  Identities=11%  Similarity=0.015  Sum_probs=115.0

Q ss_pred             CEEEEEeCC--CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecC----CeEEEEECCCCc
Q 009993          195 KLLVAGGTD--GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD----MTVRVWDRALLK  268 (520)
Q Consensus       195 ~~l~sg~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d----g~v~iwd~~~~~  268 (520)
                      .+++.|+.+  ..+.+||..+..-...           ..+......-..+.+++..++.|+.+    ..+.+||..+.+
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~-----------~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~   81 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDI-----------RCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDS   81 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEEC-----------CCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTE
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecC-----------CCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCe
Confidence            355566653  5688888776532111           11111122223334577777777755    678899998775


Q ss_pred             EEEEeee---ccCEEEEeeCCCEEEEEc-C------CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC--
Q 009993          269 CLKVLRH---SDWVYGLAPHDTTVASTS-G------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE--  336 (520)
Q Consensus       269 ~~~~~~~---~~~v~~~~~~~~~l~~~~-d------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~--  336 (520)
                      -...-..   ...-..+..++.+++.|+ +      ..+.+||+.+.+-...-.......-.+++. -++.+++.|+.  
T Consensus        82 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~  160 (306)
T 3ii7_A           82 WYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLG  160 (306)
T ss_dssp             EEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEES
T ss_pred             EEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCC
Confidence            4333221   111122235666766665 4      459999998875332211111111111222 25666666654  


Q ss_pred             -------CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCC-----CcEEEEeCCcccccCCCCCCC
Q 009993          337 -------DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGD-----GKLSLIDVRKLLRSGRPTSGK  404 (520)
Q Consensus       337 -------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~  404 (520)
                             -..+.+||+.+..-    ..+..+......-..+.+++..++.|+.+     ..+.+||+.+..-        
T Consensus       161 ~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W--------  228 (306)
T 3ii7_A          161 NNVSGRVLNSCEVYDPATETW----TELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEW--------  228 (306)
T ss_dssp             CTTTCEECCCEEEEETTTTEE----EEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEE--------
T ss_pred             CCCcccccceEEEeCCCCCeE----EECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcE--------
Confidence                   34588899877621    12222222222233444566677776653     4588888876321        


Q ss_pred             ceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCC-----CeEEEEeCCch
Q 009993          405 RVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEE-----GIVRIWNFSQA  453 (520)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~D-----g~v~iwd~~~~  453 (520)
                           ..+........+|    .++..++..++.||.+     ..+.+||..+.
T Consensus       229 -----~~~~~~p~~r~~~----~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          229 -----KMVSPMPWKGVTV----KCAAVGSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             -----EECCCCSCCBSCC----EEEEETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             -----EECCCCCCCccce----eEEEECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence                 1111111111222    2333466688888854     46788888764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.55  E-value=0.04  Score=48.89  Aligned_cols=198  Identities=11%  Similarity=0.056  Sum_probs=117.5

Q ss_pred             hhccccccEEEEEEccCCCEEE-EEeCCCeEEEEECCCCcEEEEeCC---CCceEEEEecCCCEEEEEeCCCcEEEEEcc
Q 009993          137 VLYGHTEAVLTVFVLASAKLLF-TSGYDSIVRMWHLEDGFSIASSKP---LGCTIRAVAADKKLLVAGGTDGFIHCWRAV  212 (520)
Q Consensus       137 ~l~~h~~~V~~l~~~~~~~~l~-sgs~dg~v~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~  212 (520)
                      .+.|-.+.+..++++|++..|+ +...++.|...|.. ++.+..+.-   ....-.++..++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            4556667899999999866555 46778889999987 887777632   222333444666666665567788888876


Q ss_pred             cCcceeeeccCCccccceEEe----ccCCCCeEEEEEc--CCEEEEEecCCeEEEEECC---CCcEEEEeee--------
Q 009993          213 EVLPHLFDISGSEKQNTQFRL----WEHEGPITSLALD--LTRIYSGSWDMTVRVWDRA---LLKCLKVLRH--------  275 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~--~~~l~s~s~dg~v~iwd~~---~~~~~~~~~~--------  275 (520)
                      .... +..       .....+    ...+.....|+++  ++.|+++.......+|.+.   ....+..+..        
T Consensus       100 ~~~~-i~~-------~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~  171 (255)
T 3qqz_A          100 PNSE-VKI-------LKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFT  171 (255)
T ss_dssp             TTCC-EEE-------EEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCC
T ss_pred             CCCe-eee-------eeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccc
Confidence            5431 000       001111    1245667899994  4577777766555555543   1112222211        


Q ss_pred             ccCEEEEe--eC-CCEEEEEc-CCeEEEEECCCCeeeEEeec--cc------ccceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993          276 SDWVYGLA--PH-DTTVASTS-GSDVYIWDTNSGCLLTVVNG--AH------VGNTKSLARSHTGDFLFTGGEDGAIHMY  343 (520)
Q Consensus       276 ~~~v~~~~--~~-~~~l~~~~-d~~i~iwd~~~~~~~~~~~~--~~------~~~i~~l~~s~~~~~l~tg~~dg~i~iw  343 (520)
                      ...+.+++  |. +++++... +..+.++|... +.+..+..  +.      ......|+|.++|++.++ ++.+.++.|
T Consensus       172 ~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f  249 (255)
T 3qqz_A          172 LDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF  249 (255)
T ss_dssp             SSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred             cCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence            11223333  43 44555555 68899999764 45544432  21      136789999999985554 787777766


Q ss_pred             Ec
Q 009993          344 EI  345 (520)
Q Consensus       344 d~  345 (520)
                      .-
T Consensus       250 ~~  251 (255)
T 3qqz_A          250 TP  251 (255)
T ss_dssp             EC
T ss_pred             Ee
Confidence            53

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.47  E-value=0.089  Score=51.02  Aligned_cols=144  Identities=7%  Similarity=-0.008  Sum_probs=84.6

Q ss_pred             EEEec-CCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecC-C----eE
Q 009993          188 RAVAA-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD-M----TV  259 (520)
Q Consensus       188 ~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d-g----~v  259 (520)
                      .+++| ++..|+.+...+.|..+|..++.              ...+.........+++  +++.|+.+... +    .+
T Consensus       142 lavdp~~~g~Lyv~d~~~~I~~id~~~~~--------------v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v  207 (430)
T 3tc9_A          142 LSFDPKNHNHLYLVGEQHPTRLIDFEKEY--------------VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNN  207 (430)
T ss_dssp             EEEETTEEEEEEEEEBTEEEEEEETTTTE--------------EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEE
T ss_pred             EEECCCCCCeEEEEeCCCcEEEEECCCCE--------------EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceE
Confidence            45666 35556666555778888876542              2222234456788888  56756665542 1    34


Q ss_pred             EEEECCCCcEE--EEee---eccCEEEEee-CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEE-
Q 009993          260 RVWDRALLKCL--KVLR---HSDWVYGLAP-HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFL-  331 (520)
Q Consensus       260 ~iwd~~~~~~~--~~~~---~~~~v~~~~~-~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l-  331 (520)
                      ...+.. +...  ..+.   ++..+ ++.+ ++.++++-. ++.|..+|...+........+.......++|+|+|++| 
T Consensus       208 ~~~~~~-g~~~~~~~l~~~~~p~gi-avdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ly  285 (430)
T 3tc9_A          208 YILTRE-SGFKVITELTKGQNCNGA-ETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAY  285 (430)
T ss_dssp             EEEEGG-GTSCSEEEEEECSSCCCE-EECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEE
T ss_pred             EEEeCC-CceeeeeeeccCCCceEE-EEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEE
Confidence            444432 2211  2222   32222 3456 566666655 78999999987765333322223457899999999954 


Q ss_pred             EEEeCCCeEEEEEccc
Q 009993          332 FTGGEDGAIHMYEIIN  347 (520)
Q Consensus       332 ~tg~~dg~i~iwd~~~  347 (520)
                      ++-...+.|..++...
T Consensus       286 v~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          286 IVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEETTTTEEEEEEEET
T ss_pred             EEECCCCEEEEEeCCc
Confidence            4555678899988764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.44  E-value=0.08  Score=49.73  Aligned_cols=150  Identities=7%  Similarity=-0.082  Sum_probs=90.5

Q ss_pred             CCCeEEEEEc--CCEEEEE-ecCCeEEEEECCCCcEEEEee-eccCEE--EEeeCCC-EEEEEc-CCeEEEEECCCCeee
Q 009993          237 EGPITSLALD--LTRIYSG-SWDMTVRVWDRALLKCLKVLR-HSDWVY--GLAPHDT-TVASTS-GSDVYIWDTNSGCLL  308 (520)
Q Consensus       237 ~~~v~~l~~~--~~~l~s~-s~dg~v~iwd~~~~~~~~~~~-~~~~v~--~~~~~~~-~l~~~~-d~~i~iwd~~~~~~~  308 (520)
                      ...+..++|+  .+.|+.. ...+.|..+++........+. ......  ++.+.+. ++++-. .+.|.+.++......
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  151 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  151 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence            3457788884  3555544 467889999988765443333 112223  3444444 444444 688999998765433


Q ss_pred             EEeecccccceEEEEecCCCCEEEEE-eCC-CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEE-eCC
Q 009993          309 TVVNGAHVGNTKSLARSHTGDFLFTG-GED-GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSA-AGD  383 (520)
Q Consensus       309 ~~~~~~~~~~i~~l~~s~~~~~l~tg-~~d-g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~-s~d  383 (520)
                      ..+. ........++++|.+..|+.. ... +.|..+++....      ........-...+.|++++  ..|+.+ +..
T Consensus       152 ~l~~-~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~------~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~  224 (349)
T 3v64_C          152 VLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKH  224 (349)
T ss_dssp             EEEC-TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS------CEESCCSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             EEEe-CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC------cEEEEECCCCCcceEEEeCCCCEEEEEECCC
Confidence            3332 344567899999966655544 344 778888876542      1111122344678999975  455444 456


Q ss_pred             CcEEEEeCCc
Q 009993          384 GKLSLIDVRK  393 (520)
Q Consensus       384 g~i~vwd~~~  393 (520)
                      +.|..+|+..
T Consensus       225 ~~I~~~~~dG  234 (349)
T 3v64_C          225 HVIERANLDG  234 (349)
T ss_dssp             TEEEEEETTS
T ss_pred             CEEEEEeCCC
Confidence            7899999864

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.43  E-value=0.082  Score=49.65  Aligned_cols=229  Identities=10%  Similarity=-0.061  Sum_probs=126.4

Q ss_pred             ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCc-eEEEEecCCCEEE-EEeCCCcEEEEEcccCcceeee
Q 009993          143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC-TIRAVAADKKLLV-AGGTDGFIHCWRAVEVLPHLFD  220 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~l~-sg~~dg~i~vwd~~~~~~~~~~  220 (520)
                      +..+|.+..++. +|+.+. ...|+..++.............. .-.++.+.+..|+ +-...+.|..++......    
T Consensus        34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~----  107 (349)
T 3v64_C           34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV----  107 (349)
T ss_dssp             TSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----
T ss_pred             CCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc----
Confidence            344566666644 444333 34588888876554444433322 2234555555444 445567888888765421    


Q ss_pred             ccCCccccceEEeccCCCCeEEEEEc--CCEE-EEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-
Q 009993          221 ISGSEKQNTQFRLWEHEGPITSLALD--LTRI-YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-  293 (520)
Q Consensus       221 ~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l-~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-  293 (520)
                               .............++++  ++.| ++-...+.|.+.++........+. .-.....++  |.+..++.+. 
T Consensus       108 ---------~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~  178 (349)
T 3v64_C          108 ---------EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW  178 (349)
T ss_dssp             ---------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEEC
T ss_pred             ---------eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEecc
Confidence                     11111122334566663  4444 555556889999987554333332 223344544  5455555444 


Q ss_pred             -C-CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEE-eCCCeEEEEEcccCccccceeeeeeecCCcCCEEEE
Q 009993          294 -G-SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL  370 (520)
Q Consensus       294 -d-~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l  370 (520)
                       . +.|..+++..... ..+........+.++++|++..|+.+ ...+.|..+|+....      ....+.........+
T Consensus       179 ~~~~~I~r~~~dG~~~-~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~------~~~~~~~~~~~P~gi  251 (349)
T 3v64_C          179 GNTPRIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH------RKAVISQGLPHPFAI  251 (349)
T ss_dssp             SSSCEEEEEETTSCSC-EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS------CEEEECSSCSSEEEE
T ss_pred             CCCCEEEEEeCCCCCc-EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc------eEEEEeCCCCCceEE
Confidence             4 7788888865432 22221234457899999877766655 446789999987542      111122233456777


Q ss_pred             EecCCEEEEE-eCCCcEEEEeCCc
Q 009993          371 AFEFPWLVSA-AGDGKLSLIDVRK  393 (520)
Q Consensus       371 ~~~~~~l~s~-s~dg~i~vwd~~~  393 (520)
                      ++....|+.+ ...+.|..++..+
T Consensus       252 av~~~~ly~td~~~~~V~~~~~~~  275 (349)
T 3v64_C          252 TVFEDSLYWTDWHTKSINSANKFT  275 (349)
T ss_dssp             EEETTEEEEEETTTTEEEEEETTT
T ss_pred             EEECCEEEEecCCCCeEEEEEccC
Confidence            7766555444 4567788877544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.43  E-value=0.057  Score=51.57  Aligned_cols=191  Identities=10%  Similarity=-0.001  Sum_probs=109.3

Q ss_pred             ccEEEEEEccCCC-EEEEEeCCCeEEEEECCCCcEEEEeCC--CCceEEEEecCCC-EEEEEeCCCcEEEEEcccCccee
Q 009993          143 EAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKP--LGCTIRAVAADKK-LLVAGGTDGFIHCWRAVEVLPHL  218 (520)
Q Consensus       143 ~~V~~l~~~~~~~-~l~sgs~dg~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~  218 (520)
                      ..+..++|++.+. ++++-...+.|..+++..+.....+..  ....-.++.+.+. ++++-...+.|.+.++....   
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~---  192 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH---  192 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS---
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc---
Confidence            4578899997555 444555678899999876654333221  1222345565444 44455556677777654321   


Q ss_pred             eeccCCccccceEEeccCCCCeEEEEEc--CCEEEEEe-cC-CeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEE
Q 009993          219 FDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGS-WD-MTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVAS  291 (520)
Q Consensus       219 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s-~d-g~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~  291 (520)
                                ....+.........++++  +..|+... .. +.|..+++.......... .-...+.++  +++..|+.
T Consensus       193 ----------~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~  262 (386)
T 3v65_B          193 ----------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYW  262 (386)
T ss_dssp             ----------CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEE
T ss_pred             ----------eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEE
Confidence                      111122233556788885  45555544 33 678888876543332222 222344554  55555555


Q ss_pred             Ec--CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993          292 TS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  348 (520)
Q Consensus       292 ~~--d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~  348 (520)
                      +.  .+.|..+|+........+. ........+++ ..+.++++-...+.|..++..++
T Consensus       263 aD~~~~~I~~~d~dG~~~~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          263 VDAKHHVIERANLDGSHRKAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             EETTTTEEEEECTTSCSCEEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred             EECCCCEEEEEeCCCCeeEEEEE-CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence            54  6889999987543333332 23445677777 34556666667788888886555

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.40  E-value=0.022  Score=52.52  Aligned_cols=224  Identities=11%  Similarity=0.036  Sum_probs=114.7

Q ss_pred             CCCEEEEEeCC----CeEEEEECCCCcEEEE--eCCCCceEEEEecCCCEEEEEeC----C-----CcEEEEEcccCcce
Q 009993          153 SAKLLFTSGYD----SIVRMWHLEDGFSIAS--SKPLGCTIRAVAADKKLLVAGGT----D-----GFIHCWRAVEVLPH  217 (520)
Q Consensus       153 ~~~~l~sgs~d----g~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~sg~~----d-----g~i~vwd~~~~~~~  217 (520)
                      ++.+++.|+.+    ..+.+||..+++-...  +............++.+++.|+.    +     ..+.++|..+..-.
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~  103 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS  103 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence            46677777632    3688999887653321  11111111122346677777765    2     45777887665321


Q ss_pred             eeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecC-----CeEEEEECCCCcEEEEeeec---cCEEEEeeCCCEE
Q 009993          218 LFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD-----MTVRVWDRALLKCLKVLRHS---DWVYGLAPHDTTV  289 (520)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~l  289 (520)
                      ..           ..+......-....+++..++.|+.+     ..+.+||..+.+-...-..+   ..-.++..++.++
T Consensus       104 ~~-----------~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iy  172 (308)
T 1zgk_A          104 PC-----------APMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLY  172 (308)
T ss_dssp             EC-----------CCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEE
T ss_pred             EC-----------CCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEE
Confidence            11           01111112223334467777777643     36888998876543322211   1112223466666


Q ss_pred             EEEc-C-----CeEEEEECCCCeeeEEeeccc-ccceEEEEecCCCCEEEEEeCC-----CeEEEEEcccCccccceeee
Q 009993          290 ASTS-G-----SDVYIWDTNSGCLLTVVNGAH-VGNTKSLARSHTGDFLFTGGED-----GAIHMYEIINDCTEANVLLV  357 (520)
Q Consensus       290 ~~~~-d-----~~i~iwd~~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~  357 (520)
                      +.|+ +     ..+.+||+.+.+-...-.... ......+.+  ++.+++.|+.+     ..+.+||+.+..-    ..+
T Consensus       173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W----~~~  246 (308)
T 1zgk_A          173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW----TFV  246 (308)
T ss_dssp             EECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE----EEC
T ss_pred             EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE----EEC
Confidence            6665 3     458999998764322111011 111122222  56777777664     4589999877621    122


Q ss_pred             eeecCCcCCEEEEEecCCEEEEEeCC-----CcEEEEeCCc
Q 009993          358 ATWIPHTGPVNSLAFEFPWLVSAAGD-----GKLSLIDVRK  393 (520)
Q Consensus       358 ~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~  393 (520)
                      ..+.........+..++..++.|+.+     ..+.+||+.+
T Consensus       247 ~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~  287 (308)
T 1zgk_A          247 APMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDT  287 (308)
T ss_dssp             CCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             CCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCC
Confidence            22222222233444566777777654     3577888765

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.40  E-value=0.1  Score=50.05  Aligned_cols=198  Identities=14%  Similarity=0.016  Sum_probs=113.0

Q ss_pred             cCCCCeEEEEEc--CCEEEEE-ecCCeEEEEECCCC----cEEEEee-eccCEEEEe--e-CCCEEEEEc-CCeEEEEEC
Q 009993          235 EHEGPITSLALD--LTRIYSG-SWDMTVRVWDRALL----KCLKVLR-HSDWVYGLA--P-HDTTVASTS-GSDVYIWDT  302 (520)
Q Consensus       235 ~h~~~v~~l~~~--~~~l~s~-s~dg~v~iwd~~~~----~~~~~~~-~~~~v~~~~--~-~~~~l~~~~-d~~i~iwd~  302 (520)
                      .....+..++|+  .+.|+.. ...+.|+.+++...    .....+. .......++  + .++++++-. .+.|.+.++
T Consensus       109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~  188 (400)
T 3p5b_L          109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  188 (400)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred             cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence            345677889984  4555554 45678988988652    2222222 223444555  4 344444444 688999998


Q ss_pred             CCCeeeEEeecccccceEEEEecCCCCEEEEEeC--CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEE
Q 009993          303 NSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE--DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLV  378 (520)
Q Consensus       303 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~  378 (520)
                      ........+. ........+++.|.+..|+....  .+.|...++....      ........-...+.|++++  ..|+
T Consensus       189 ~g~~~~~l~~-~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~------~~~~~~~~l~~P~glavd~~~~~lY  261 (400)
T 3p5b_L          189 KGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD------IYSLVTENIQWPNGITLDLLSGRLY  261 (400)
T ss_dssp             TTCSEEEEEE-CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS------CEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             CCCceEEEEe-CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc------cEEEEECCCCceEEEEEEeCCCEEE
Confidence            8665444443 24456789999997766665543  3678888886552      1122223335678999984  4555


Q ss_pred             EE-eCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEeCCchHhH
Q 009993          379 SA-AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEI  456 (520)
Q Consensus       379 s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~~  456 (520)
                      .+ +..+.|...|+.....          ..+...       .+......+++.+++ .+++-...+.|..++..++..+
T Consensus       262 ~aD~~~~~I~~~d~dG~~~----------~~~~~~-------~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~  324 (400)
T 3p5b_L          262 WVDSKLHSISSIDVNGGNR----------KTILED-------EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV  324 (400)
T ss_dssp             EEETTTTEEEEEETTSCCC----------EEEEEC-------SSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCC
T ss_pred             EEECCCCEEEEEeCCCCcc----------EEEEeC-------CCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCce
Confidence            55 4567899999864211          001000       001111223344444 6666667788998987666544

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.38  E-value=0.034  Score=51.17  Aligned_cols=227  Identities=10%  Similarity=0.001  Sum_probs=114.2

Q ss_pred             cCCCEEEEEeCC----CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEec----C-----Ce
Q 009993          192 ADKKLLVAGGTD----GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSW----D-----MT  258 (520)
Q Consensus       192 ~~~~~l~sg~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~----d-----g~  258 (520)
                      .++.+++.|+.+    ..+.++|..+..-....           .+......-..+..++..++.|+.    +     ..
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~-----------~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~   91 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLA-----------DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSA   91 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECC-----------CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCC
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECC-----------CCCcccccceEEEECCEEEEECCCcCCCCCCeecce
Confidence            556667777642    35777887665321110           011111111223346666777765    2     45


Q ss_pred             EEEEECCCCcEEEEee---eccCEEEEeeCCCEEEEEc-C-----CeEEEEECCCCeeeEE--eecccccceEEEEecCC
Q 009993          259 VRVWDRALLKCLKVLR---HSDWVYGLAPHDTTVASTS-G-----SDVYIWDTNSGCLLTV--VNGAHVGNTKSLARSHT  327 (520)
Q Consensus       259 v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~l~~~~-d-----~~i~iwd~~~~~~~~~--~~~~~~~~i~~l~~s~~  327 (520)
                      +.+||..+.+-...-.   ....-..+..++++++.|+ +     ..+.+||+.+.+-...  +..+ ...-..+.+  +
T Consensus        92 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~  168 (308)
T 1zgk_A           92 LDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR-RIGVGVAVL--N  168 (308)
T ss_dssp             EEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC-CBSCEEEEE--T
T ss_pred             EEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCcc-ccceEEEEE--C
Confidence            8889988765333221   1111122335677776665 3     4689999987643221  1111 111122222  5


Q ss_pred             CCEEEEEeCC-----CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCC-----CcEEEEeCCccccc
Q 009993          328 GDFLFTGGED-----GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGD-----GKLSLIDVRKLLRS  397 (520)
Q Consensus       328 ~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~~~~~  397 (520)
                      +.+++.|+.+     ..+.+||+.+..-    ..+..+.........+.+++..++.|+.+     ..+.+||+.+..- 
T Consensus       169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W-  243 (308)
T 1zgk_A          169 RLLYAVGGFDGTNRLNSAECYYPERNEW----RMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW-  243 (308)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEE----EECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE-
T ss_pred             CEEEEEeCCCCCCcCceEEEEeCCCCeE----eeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcE-
Confidence            6677777654     4588899876521    11222222222234455566777777654     5688999876321 


Q ss_pred             CCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCC-----CeEEEEeCCch
Q 009993          398 GRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEE-----GIVRIWNFSQA  453 (520)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~D-----g~v~iwd~~~~  453 (520)
                                  ..+.........|.    ++..++.+++.||.+     ..|.+||..+.
T Consensus       244 ------------~~~~~~p~~r~~~~----~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          244 ------------TFVAPMKHRRSALG----ITVHQGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             ------------EECCCCSSCCBSCE----EEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             ------------EECCCCCCCccceE----EEEECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence                        11111111112222    223456677778754     35677877654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.36  E-value=0.091  Score=48.58  Aligned_cols=191  Identities=9%  Similarity=-0.041  Sum_probs=108.2

Q ss_pred             CeEEEEEc--CCEE-EEEecCCeEEEEECCCCcEE-EEee-eccCE--EEEeeCCC-EEEEEc-CCeEEEEECCCCeeeE
Q 009993          239 PITSLALD--LTRI-YSGSWDMTVRVWDRALLKCL-KVLR-HSDWV--YGLAPHDT-TVASTS-GSDVYIWDTNSGCLLT  309 (520)
Q Consensus       239 ~v~~l~~~--~~~l-~s~s~dg~v~iwd~~~~~~~-~~~~-~~~~v--~~~~~~~~-~l~~~~-d~~i~iwd~~~~~~~~  309 (520)
                      .+..++|+  .+.| ++-...+.|..++....... ..+. .-...  .++.+.+. ++++-. .+.|.++++.......
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  115 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV  115 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence            45677884  3444 45456788999998766321 1222 11223  33444344 444444 6889999987543333


Q ss_pred             EeecccccceEEEEecCCCCEEEEEeC--CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEE-eCCC
Q 009993          310 VVNGAHVGNTKSLARSHTGDFLFTGGE--DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSA-AGDG  384 (520)
Q Consensus       310 ~~~~~~~~~i~~l~~s~~~~~l~tg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~-s~dg  384 (520)
                      .+. ........+++.|.+..|+....  .+.|..+++....      ........-...+.|++++  ..|+.+ +..+
T Consensus       116 l~~-~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~------~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~  188 (318)
T 3sov_A          116 LFW-QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS------RFIIINSEIYWPNGLTLDYEEQKLYWADAKLN  188 (318)
T ss_dssp             EEC-SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS------CEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             EEe-CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC------eEEEEECCCCCccEEEEeccCCEEEEEECCCC
Confidence            332 34456789999997666665553  5788888876542      1111122234678999975  455544 4568


Q ss_pred             cEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEeCCchHh
Q 009993          385 KLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFE  455 (520)
Q Consensus       385 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~  455 (520)
                      .|..+|+.....          ..+         ..+.......++.+++ .+++-...+.|..++..++..
T Consensus       189 ~I~~~d~dG~~~----------~~~---------~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          189 FIHKSNLDGTNR----------QAV---------VKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             EEEEEETTSCSC----------EEE---------ECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCS
T ss_pred             EEEEEcCCCCce----------EEE---------ecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCc
Confidence            899999864210          000         0111111223333444 566666778899999876654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.30  E-value=0.0001  Score=69.42  Aligned_cols=45  Identities=38%  Similarity=0.506  Sum_probs=41.8

Q ss_pred             cccCCCHHHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhhh
Q 009993           63 TITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEF  107 (520)
Q Consensus        63 ~~~~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~~  107 (520)
                      .+..||+|++.+||+||+..++.+++.|||+|+.++.+..+|+.+
T Consensus         8 ~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l   52 (336)
T 2ast_B            8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (336)
T ss_dssp             CSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred             ChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence            378999999999999999999999999999999999888888764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.28  E-value=0.11  Score=47.96  Aligned_cols=214  Identities=13%  Similarity=-0.006  Sum_probs=116.9

Q ss_pred             CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc--CCEEEEE-ecCCeEEEEECCC----CcEEEEee-e
Q 009993          204 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSG-SWDMTVRVWDRAL----LKCLKVLR-H  275 (520)
Q Consensus       204 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~-s~dg~v~iwd~~~----~~~~~~~~-~  275 (520)
                      ..|+..|+.+...             . .+......+..++|+  ++.|+.+ ..++.|..+++..    ......+. .
T Consensus        10 ~~I~~i~~~~~~~-------------~-~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~   75 (316)
T 1ijq_A           10 HEVRKMTLDRSEY-------------T-SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD   75 (316)
T ss_dssp             SSEEEEETTSCCC-------------E-EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS
T ss_pred             CeEEEEECCCcce-------------E-ehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC
Confidence            4688888765421             1 122234567788884  4555544 4568999999876    22222222 1


Q ss_pred             ccCEEEEe--eCCCEE-EEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCC--CeEEEEEcccCc
Q 009993          276 SDWVYGLA--PHDTTV-ASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED--GAIHMYEIINDC  349 (520)
Q Consensus       276 ~~~v~~~~--~~~~~l-~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d--g~i~iwd~~~~~  349 (520)
                      ......++  +.+..| ++-. .+.|.++|+........+. ........++++|.+..|+.+...  +.|..+++....
T Consensus        76 ~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~  154 (316)
T 1ijq_A           76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  154 (316)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred             CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE-CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC
Confidence            12233444  444444 4444 6889999987554333332 234567899999977766555443  688888876541


Q ss_pred             cccceeeeeeecCCcCCEEEEEecC--CEEEEE-eCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceee
Q 009993          350 TEANVLLVATWIPHTGPVNSLAFEF--PWLVSA-AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL  426 (520)
Q Consensus       350 ~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  426 (520)
                            ........-...+.|++++  ..|+.+ +..+.|..+|+.....          ..+.....    ...+.   
T Consensus       155 ------~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~----------~~~~~~~~----~~~~P---  211 (316)
T 1ijq_A          155 ------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR----------KTILEDEK----RLAHP---  211 (316)
T ss_dssp             ------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----------EEEEECTT----TTSSE---
T ss_pred             ------eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce----------EEEeecCC----ccCCc---
Confidence                  1111122345678999974  455544 4567899999864210          01110000    01122   


Q ss_pred             EEEEecCC-EEEEecCCCeEEEEeCCchHh
Q 009993          427 LSVDIGAD-RIVCGGEEGIVRIWNFSQAFE  455 (520)
Q Consensus       427 ~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~  455 (520)
                      ..+..+++ .+++-...+.|..++..++..
T Consensus       212 ~giav~~~~ly~~d~~~~~V~~~~~~~g~~  241 (316)
T 1ijq_A          212 FSLAVFEDKVFWTDIINEAIFSANRLTGSD  241 (316)
T ss_dssp             EEEEEETTEEEEEETTTTEEEEEETTTCCC
T ss_pred             EEEEEECCEEEEEECCCCeEEEEeCCCCcc
Confidence            22333344 666666778899998766654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.26  E-value=0.34  Score=53.13  Aligned_cols=211  Identities=11%  Similarity=0.082  Sum_probs=125.8

Q ss_pred             eEEEEECCCCcEEEEeC-CCCceEEEEe----c--CCCEEEEEe----------CCCcEEEEEcccCcceeeeccCCccc
Q 009993          165 IVRMWHLEDGFSIASSK-PLGCTIRAVA----A--DKKLLVAGG----------TDGFIHCWRAVEVLPHLFDISGSEKQ  227 (520)
Q Consensus       165 ~v~vwd~~~~~~~~~~~-~~~~~v~~~~----~--~~~~l~sg~----------~dg~i~vwd~~~~~~~~~~~~~~~~~  227 (520)
                      .|++.|..+.+.+..+. .....+.++.    .  ...++++|.          ..|.|.++++..+.           .
T Consensus       808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k-----------L  876 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK-----------L  876 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE-----------E
T ss_pred             EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE-----------E
Confidence            36777777777665543 2233344443    1  246888886          34778888876321           1


Q ss_pred             cceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEE-EeeeccC--EEEEeeCCCEEEEEc-CCeEEE--E
Q 009993          228 NTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLK-VLRHSDW--VYGLAPHDTTVASTS-GSDVYI--W  300 (520)
Q Consensus       228 ~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~--v~~~~~~~~~l~~~~-d~~i~i--w  300 (520)
                      ..+ .-....++|++++- +| +|++|- ..+|++|++...+.+. ...+-..  +..+...++++++|. -..|.+  |
T Consensus       877 ~lv-~~~~v~g~v~al~~~~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y  953 (1158)
T 3ei3_A          877 QTV-AEKEVKGAVYSMVEFNG-KLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAY  953 (1158)
T ss_dssp             EEE-EEEEESSCEEEEEEETT-EEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEE
T ss_pred             EEE-EEEEcCCcCEEEeeeCC-EEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEE
Confidence            112 22235788999987 55 555554 4789999998665444 1112222  335656678888887 444444  5


Q ss_pred             ECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccc----cceeeeeeecCCcCCEEEEEe---c
Q 009993          301 DTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE----ANVLLVATWIPHTGPVNSLAF---E  373 (520)
Q Consensus       301 d~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~----~~~~~~~~~~~h~~~v~~l~~---~  373 (520)
                      +...++....-.......++++.+-.+ ..++.+..+|.+.++........    ........+. ....|+++.-   .
T Consensus       954 ~~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fh-lG~~vt~~~~~sl~ 1031 (1158)
T 3ei3_A          954 KPMEGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFH-LGEFVNVFCHGSLV 1031 (1158)
T ss_dssp             ETTTTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEE-CSSCEEEEEECCSC
T ss_pred             EcCCCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEe-CCCcEeeEEeeeee
Confidence            666665554444446678888888644 57888999999999987653211    1112222221 1345676652   1


Q ss_pred             C-----------CEEEEEeCCCcEEEEeC
Q 009993          374 F-----------PWLVSAAGDGKLSLIDV  391 (520)
Q Consensus       374 ~-----------~~l~s~s~dg~i~vwd~  391 (520)
                      +           ..++.++.+|.|.+.-.
T Consensus      1032 ~~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A         1032 MQNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp             CC-------CEEEEEEEEETTSCEEEEEE
T ss_pred             cCCCccccccccceEEEEecCCEEEEEEE
Confidence            1           24788889999887643

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.22  E-value=0.1  Score=48.13  Aligned_cols=218  Identities=10%  Similarity=0.018  Sum_probs=111.7

Q ss_pred             EEEEEeCCCeEEEEECCCCcEEE-EeCC--CCceEEEEecCCCEEEEEeC----C-------CcEEEEEcccCcceeeec
Q 009993          156 LLFTSGYDSIVRMWHLEDGFSIA-SSKP--LGCTIRAVAADKKLLVAGGT----D-------GFIHCWRAVEVLPHLFDI  221 (520)
Q Consensus       156 ~l~sgs~dg~v~vwd~~~~~~~~-~~~~--~~~~v~~~~~~~~~l~sg~~----d-------g~i~vwd~~~~~~~~~~~  221 (520)
                      +++.|+  ..+.+||..+++-.. .+..  ..........++..++.|+.    +       ..+.+||..+..-...  
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~--   82 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM--   82 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC--
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC--
Confidence            344555  568999998876432 2221  12222333467888888874    1       1266777765532111  


Q ss_pred             cCCccccceEEeccCCCCeEEEEEcCCEEEEEecC--------CeEEEEECCCCcEEEEee--e-ccCEEEEeeCCCEEE
Q 009993          222 SGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD--------MTVRVWDRALLKCLKVLR--H-SDWVYGLAPHDTTVA  290 (520)
Q Consensus       222 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d--------g~v~iwd~~~~~~~~~~~--~-~~~v~~~~~~~~~l~  290 (520)
                               ..+......-....+++..++.|+.+        ..+.+||..+.+-...-.  . ...-.++..++++++
T Consensus        83 ---------~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv  153 (315)
T 4asc_A           83 ---------PPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYV  153 (315)
T ss_dssp             ---------CCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEE
T ss_pred             ---------CCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEE
Confidence                     00111111112233466666777642        458899998765332211  1 111122336666666


Q ss_pred             EEcC-------CeEEEEECCCCeeeE--EeecccccceEEEEecCCCCEEEEEeCCC-----eEEEEEcccCccccceee
Q 009993          291 STSG-------SDVYIWDTNSGCLLT--VVNGAHVGNTKSLARSHTGDFLFTGGEDG-----AIHMYEIINDCTEANVLL  356 (520)
Q Consensus       291 ~~~d-------~~i~iwd~~~~~~~~--~~~~~~~~~i~~l~~s~~~~~l~tg~~dg-----~i~iwd~~~~~~~~~~~~  356 (520)
                      .|+.       ..+.+||+.+.+-..  .+..+ .....++.+  ++++++.|+.++     .+.+||+.+..-    ..
T Consensus       154 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~  226 (315)
T 4asc_A          154 IGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTA-RSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKW----AP  226 (315)
T ss_dssp             ECCBCTTSCBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEE----EE
T ss_pred             EeCCCCCCcccceEEEEeCCCCeEEECCCCCCc-hhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeE----EE
Confidence            6652       469999998764322  11111 111122222  567777777654     488888876621    22


Q ss_pred             eeeecCCcCCEEEEEecCCEEEEEeCCC--------------cEEEEeCCc
Q 009993          357 VATWIPHTGPVNSLAFEFPWLVSAAGDG--------------KLSLIDVRK  393 (520)
Q Consensus       357 ~~~~~~h~~~v~~l~~~~~~l~s~s~dg--------------~i~vwd~~~  393 (520)
                      +..+.........+.+++..++.|+.++              .+.+||+.+
T Consensus       227 ~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~  277 (315)
T 4asc_A          227 FEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEE  277 (315)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTT
T ss_pred             CCCCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCC
Confidence            2222222223344556677777777632              367788765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.11  E-value=0.36  Score=50.52  Aligned_cols=151  Identities=14%  Similarity=0.036  Sum_probs=89.6

Q ss_pred             CCCCeEEEEEc--CCEEE-EEecCCeEEEEECCCC----cEEEEee-eccCEEE--EeeCCCEEEEE-c-CCeEEEEECC
Q 009993          236 HEGPITSLALD--LTRIY-SGSWDMTVRVWDRALL----KCLKVLR-HSDWVYG--LAPHDTTVAST-S-GSDVYIWDTN  303 (520)
Q Consensus       236 h~~~v~~l~~~--~~~l~-s~s~dg~v~iwd~~~~----~~~~~~~-~~~~v~~--~~~~~~~l~~~-~-d~~i~iwd~~  303 (520)
                      ....+..|+++  .+.|+ +-...+.|+.+++...    .....+. .......  +.+.++.|+.+ . .+.|.+.++.
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            45567788884  34544 4455678888888653    2222222 2222333  44555445444 4 6889999998


Q ss_pred             CCeeeEEeecccccceEEEEecCCCCEEEEEeC--CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEE
Q 009993          304 SGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE--DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVS  379 (520)
Q Consensus       304 ~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s  379 (520)
                      .......+. ........|++.|.+.+|+....  .+.|...++....      ........-...+.|++++  ..|+.
T Consensus       502 G~~~~~l~~-~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~------~~~lv~~~l~~P~GLavD~~~~~LYw  574 (791)
T 3m0c_C          502 GVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD------IYSLVTENIQWPNGITLDLLSGRLYW  574 (791)
T ss_dssp             SSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC------EEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             CCeEEEEEe-CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc------eEEEEeCCCCCceEEEEecCCCeEEE
Confidence            654433333 34456889999998666665543  2678888886552      2222223345788999874  55555


Q ss_pred             Ee-CCCcEEEEeCCc
Q 009993          380 AA-GDGKLSLIDVRK  393 (520)
Q Consensus       380 ~s-~dg~i~vwd~~~  393 (520)
                      +. ..+.|...++..
T Consensus       575 aD~~~~~I~~~d~dG  589 (791)
T 3m0c_C          575 VDSKLHSISSIDVNG  589 (791)
T ss_dssp             EETTTTEEEEEETTS
T ss_pred             EeCCCCcEEEEecCC
Confidence            54 457788888864

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.09  E-value=0.081  Score=55.51  Aligned_cols=190  Identities=11%  Similarity=0.088  Sum_probs=100.5

Q ss_pred             eEEEEE---cCCEEEEEec-C----CeEEEEECCCC-cEEEE-eeeccCEEEEeeCCCEEEEEc-C-----CeEEEEECC
Q 009993          240 ITSLAL---DLTRIYSGSW-D----MTVRVWDRALL-KCLKV-LRHSDWVYGLAPHDTTVASTS-G-----SDVYIWDTN  303 (520)
Q Consensus       240 v~~l~~---~~~~l~s~s~-d----g~v~iwd~~~~-~~~~~-~~~~~~v~~~~~~~~~l~~~~-d-----~~i~iwd~~  303 (520)
                      +....|   |+++|+.+.. +    .+|+++|+.++ +.+.. +.....-...+++++.|+... +     ..|+++++.
T Consensus       176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lg  255 (751)
T 2xe4_A          176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMG  255 (751)
T ss_dssp             EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETT
T ss_pred             EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECC
Confidence            444444   4566554332 2    35999999998 63211 111111123458887777665 4     258889988


Q ss_pred             CCee--eEEeecccccceEEEEecCCCCEEEEEeC---CCeEEEEEcccCccccceee--eeeecCCcCCEEEEEe-cCC
Q 009993          304 SGCL--LTVVNGAHVGNTKSLARSHTGDFLFTGGE---DGAIHMYEIINDCTEANVLL--VATWIPHTGPVNSLAF-EFP  375 (520)
Q Consensus       304 ~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~tg~~---dg~i~iwd~~~~~~~~~~~~--~~~~~~h~~~v~~l~~-~~~  375 (520)
                      ++..  ...+..........+.|+|||++|+..+.   ...|+++|+.++..    ..  ........+...++.| .++
T Consensus       256 t~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~----~~~~~~l~~~~~~~~~s~~~~~g~  331 (751)
T 2xe4_A          256 KLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA----HNTLEIVRPREKGVRYDVQMHGTS  331 (751)
T ss_dssp             SCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT----CCCEEESSCCCTTCCEEEEEETTT
T ss_pred             CCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC----CceeEEeecCCCCceEEEeeeeCC
Confidence            7642  22332223344567899999998876553   34588888876521    11  1112234456677774 355


Q ss_pred             EEEEE-eCC----CcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEe
Q 009993          376 WLVSA-AGD----GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWN  449 (520)
Q Consensus       376 ~l~s~-s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd  449 (520)
                      .|+.. ..+    ..|..+|+.+....         ..       ..........+..+.+.++ ++++...||..++|-
T Consensus       332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~---------~~-------~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          332 HLVILTNEGGAVNHKLLIAPRGQPSDW---------SH-------VLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             EEEEEECTTTCTTCEEEEEETTSTTCC---------CC-------EEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEE
T ss_pred             EEEEEeCCCCCCCcEEEEEcCCCcccc---------ee-------eEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEE
Confidence            44444 333    25666665431000         00       0001112224455666666 566777778655543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.08  E-value=0.11  Score=49.24  Aligned_cols=154  Identities=13%  Similarity=0.177  Sum_probs=96.3

Q ss_pred             EeeCCCEEEEEcCCeEEEEECCCCeeeEEeeccc---ccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccc-----
Q 009993          282 LAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAH---VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN-----  353 (520)
Q Consensus       282 ~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~-----  353 (520)
                      +..++.-++.+.++.||.-++......+.+...+   -..+..+..+|+|.+||..+ +..|.|-.+..+.....     
T Consensus        28 ~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           28 SSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             EETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred             EEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence            3466777777778888888887554444544332   23678899999999999885 45799998874321111     


Q ss_pred             -eeeeeeecC------CcCCEEEEEecC-----CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcc--cc
Q 009993          354 -VLLVATWIP------HTGPVNSLAFEF-----PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQR--ML  419 (520)
Q Consensus       354 -~~~~~~~~~------h~~~v~~l~~~~-----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  419 (520)
                       ......+.-      ...+|..+.|+|     ..|++-..|+.|++||+........        .   +.....  -.
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~--------~---L~k~~~~fg~  175 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI--------V---LNKPNNSFGL  175 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE--------E---ESCCCSEEES
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc--------c---hhccccccCC
Confidence             001112111      357899999987     5999999999999999986211100        0   010000  11


Q ss_pred             cCcceeeEEEEecCC----EEEEecCCCeEEE
Q 009993          420 HGFECNLLSVDIGAD----RIVCGGEEGIVRI  447 (520)
Q Consensus       420 ~~~~~~v~~~~~~~~----~l~sg~~Dg~v~i  447 (520)
                      ......+.+++|.++    ++++.+..|-|+-
T Consensus       176 d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          176 DARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             CSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             CcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            122245667777665    6666778888864

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.06  E-value=0.035  Score=60.55  Aligned_cols=196  Identities=16%  Similarity=0.191  Sum_probs=122.8

Q ss_pred             cCCeEEEEECCCCcEEEEeeeccCEEEEe-eCCCEEEEEcCCeEEEEECCCC-eeeEEeeccc----ccceEEEEecCCC
Q 009993          255 WDMTVRVWDRALLKCLKVLRHSDWVYGLA-PHDTTVASTSGSDVYIWDTNSG-CLLTVVNGAH----VGNTKSLARSHTG  328 (520)
Q Consensus       255 ~dg~v~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~d~~i~iwd~~~~-~~~~~~~~~~----~~~i~~l~~s~~~  328 (520)
                      ...++.|+|+++.+.++.+..+..|.-.. .+.+.++..++..|+.|++... .+.+.+. .|    ...|..-..+++.
T Consensus        84 ag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fd-R~~~L~~~QIinY~~d~~~  162 (1630)
T 1xi4_A           84 AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFD-RHSSLAGCQIINYRTDAKQ  162 (1630)
T ss_pred             cCCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHh-cchhcccCeeEEeeeCCCC
Confidence            36799999999999999888777888777 7888999999999999999753 3444443 23    4567777788899


Q ss_pred             CEEEEEe-------CCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC----CEEEE-EeC---CCcEEEEeCCc
Q 009993          329 DFLFTGG-------EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF----PWLVS-AAG---DGKLSLIDVRK  393 (520)
Q Consensus       329 ~~l~tg~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s-~s~---dg~i~vwd~~~  393 (520)
                      ++++..|       -.|.+.+|+....       ..+.+.||.+.-..+..++    ..|++ +..   .+.+.|-++..
T Consensus       163 kW~~l~gi~~~~~~v~G~mQLyS~er~-------~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~  235 (1630)
T 1xi4_A          163 KWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT  235 (1630)
T ss_pred             CeEEEEeeccCCCcccceeeeeecccc-------cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCC
Confidence            9877433       3588999998766       3455667776665555532    23333 222   37899999865


Q ss_pred             ccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhh
Q 009993          394 LLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARAL  463 (520)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~  463 (520)
                      ..... +...+..   ..+..+......+. ..+.++..-..+..-+.-|.|.++|++++..+-......
T Consensus       236 ~~~~~-~~f~kk~---~~~~~~~~~~~Dfp-v~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~  300 (1630)
T 1xi4_A          236 PPTGN-QPFPKKA---VDVFFPPEAQNDFP-VAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG  300 (1630)
T ss_pred             CccCC-CCCcccc---ccccCCcccccCcc-eEEEeccccCEEEEEecCceEEEEecccchhhhhccccC
Confidence            31111 1111110   01111110011111 122233333466677778999999999999887654333

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.04  E-value=0.26  Score=47.70  Aligned_cols=188  Identities=12%  Similarity=0.099  Sum_probs=103.6

Q ss_pred             cEEEEEEccC--CCEEEEEeCCCeEEEEECCCCcEEEEeCCC-CceEEEEecCCCEEEEEeCCC----c-EEEEEcccCc
Q 009993          144 AVLTVFVLAS--AKLLFTSGYDSIVRMWHLEDGFSIASSKPL-GCTIRAVAADKKLLVAGGTDG----F-IHCWRAVEVL  215 (520)
Q Consensus       144 ~V~~l~~~~~--~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~sg~~dg----~-i~vwd~~~~~  215 (520)
                      ....++++|+  +..|+.+...+.|+.+|..++......... ...-.++.++++ |+.+...+    . +...+...+ 
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~-  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG-  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT-
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC-
Confidence            3568899984  344555544488999999877655443322 233456668888 44444321    1 222222111 


Q ss_pred             ceeeeccCCccccceEEeccCCCCeEEEEEc--CCEEE-EEecCCeEEEEECCCCcEEEEe-e--eccCE--EEEeeCCC
Q 009993          216 PHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIY-SGSWDMTVRVWDRALLKCLKVL-R--HSDWV--YGLAPHDT  287 (520)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~-s~s~dg~v~iwd~~~~~~~~~~-~--~~~~v--~~~~~~~~  287 (520)
                                 ......+. .......++++  ...|+ +-..++.|+.+|..++.....+ .  ....-  .++.++++
T Consensus       218 -----------~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~  285 (433)
T 4hw6_A          218 -----------FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGD  285 (433)
T ss_dssp             -----------TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSS
T ss_pred             -----------eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCC
Confidence                       00001111 12334456663  23444 4446788999999877663332 2  11222  45558888


Q ss_pred             EEEEEc--CCeEEEEECC--CCee--eEEeec--c------------cccceEEEEe---------cCCCCEEEEEeCCC
Q 009993          288 TVASTS--GSDVYIWDTN--SGCL--LTVVNG--A------------HVGNTKSLAR---------SHTGDFLFTGGEDG  338 (520)
Q Consensus       288 ~l~~~~--d~~i~iwd~~--~~~~--~~~~~~--~------------~~~~i~~l~~---------s~~~~~l~tg~~dg  338 (520)
                      .|+.+.  .+.|+.++..  ++..  ...+..  +            .-.....+++         .++|.++++-...+
T Consensus       286 ~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~  365 (433)
T 4hw6_A          286 WAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSH  365 (433)
T ss_dssp             EEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTT
T ss_pred             EEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCC
Confidence            555554  6889998865  3321  112211  0            1124667888         67777777777778


Q ss_pred             eEEEEEc
Q 009993          339 AIHMYEI  345 (520)
Q Consensus       339 ~i~iwd~  345 (520)
                      .|+.++.
T Consensus       366 ~I~~~~~  372 (433)
T 4hw6_A          366 TVRVLTP  372 (433)
T ss_dssp             EEEEECT
T ss_pred             EEEEECC
Confidence            8999885

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.99  E-value=0.22  Score=46.00  Aligned_cols=213  Identities=10%  Similarity=-0.054  Sum_probs=117.1

Q ss_pred             CCeEEEEECCCCc--EEEEeCCC-CceEEEEecC-CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCC
Q 009993          163 DSIVRMWHLEDGF--SIASSKPL-GCTIRAVAAD-KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEG  238 (520)
Q Consensus       163 dg~v~vwd~~~~~--~~~~~~~~-~~~v~~~~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~  238 (520)
                      ...|+..++....  ......+. .....++.+. +.++++-...+.|..++...+..            ....+...-.
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~------------~~~~~~~~l~   79 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES------------VQNVVVSGLL   79 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC------------CCEEEEECCS
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc------------eEEEEcCCCC
Confidence            4678999987663  11111111 1112334443 44555555667888888755420            0111111223


Q ss_pred             CeEEEEEc--CCE-EEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc---CCeEEEEECCCCeeeE
Q 009993          239 PITSLALD--LTR-IYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS---GSDVYIWDTNSGCLLT  309 (520)
Q Consensus       239 ~v~~l~~~--~~~-l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~---d~~i~iwd~~~~~~~~  309 (520)
                      ....++++  ++. +++-...+.|.++++........+. .......+.  +.+..++.+.   .+.|...++.......
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~  159 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI  159 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE
Confidence            44566663  444 4454566889999987543332222 223345554  5445554444   3678888876433222


Q ss_pred             EeecccccceEEEEecCCCCEEEEE-eCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEE-EEEeCCCcEE
Q 009993          310 VVNGAHVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWL-VSAAGDGKLS  387 (520)
Q Consensus       310 ~~~~~~~~~i~~l~~s~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l-~s~s~dg~i~  387 (520)
                      ... ..-...+.++++|++..|+.+ +..+.|..+|+.....    ..+  ..+.......++++...+ ++-...+.|.
T Consensus       160 ~~~-~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~----~~~--~~~~~~~P~glav~~~~lywtd~~~~~V~  232 (318)
T 3sov_A          160 IIN-SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR----QAV--VKGSLPHPFALTLFEDILYWTDWSTHSIL  232 (318)
T ss_dssp             EEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEE--ECSCCSCEEEEEEETTEEEEEETTTTEEE
T ss_pred             EEE-CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce----EEE--ecCCCCCceEEEEeCCEEEEEecCCCeEE
Confidence            222 234457899999977766655 4567899999875421    111  122345567788766544 4444567899


Q ss_pred             EEeCCcc
Q 009993          388 LIDVRKL  394 (520)
Q Consensus       388 vwd~~~~  394 (520)
                      .++..++
T Consensus       233 ~~~~~~G  239 (318)
T 3sov_A          233 ACNKYTG  239 (318)
T ss_dssp             EEETTTC
T ss_pred             EEECCCC
Confidence            8988654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.97  E-value=0.17  Score=46.65  Aligned_cols=220  Identities=10%  Similarity=0.048  Sum_probs=109.9

Q ss_pred             EEEEEeCCCeEEEEECCCCcEEE-EeCC--CCceEEEEecCCCEEEEEeC----CC-------cEEEEEcccCcceeeec
Q 009993          156 LLFTSGYDSIVRMWHLEDGFSIA-SSKP--LGCTIRAVAADKKLLVAGGT----DG-------FIHCWRAVEVLPHLFDI  221 (520)
Q Consensus       156 ~l~sgs~dg~v~vwd~~~~~~~~-~~~~--~~~~v~~~~~~~~~l~sg~~----dg-------~i~vwd~~~~~~~~~~~  221 (520)
                      +++.|+.  .+..||..+++-.. ....  ..........++..++.|+.    ++       .+.++|..+..-...  
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~--   93 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL--   93 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC--
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC--
Confidence            4444543  38899998876433 1211  11222233467788888873    12       166677665432111  


Q ss_pred             cCCccccceEEeccCCCCeEEEEEcCCEEEEEecC-------CeEEEEECCCCcEEEEeeeccC---EEEEeeCCCEEEE
Q 009993          222 SGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD-------MTVRVWDRALLKCLKVLRHSDW---VYGLAPHDTTVAS  291 (520)
Q Consensus       222 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-------g~v~iwd~~~~~~~~~~~~~~~---v~~~~~~~~~l~~  291 (520)
                               ..+...........+++..++.|+.+       ..+.+||..+.+-...-..+.+   -.++..++.+++.
T Consensus        94 ---------~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~  164 (318)
T 2woz_A           94 ---------PPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCL  164 (318)
T ss_dssp             ---------SCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEE
T ss_pred             ---------CCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEE
Confidence                     01111111222333467777777754       3578889887654333221111   1122366776666


Q ss_pred             Ec-C------CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCC-----CeEEEEEcccCccccceeeeee
Q 009993          292 TS-G------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-----GAIHMYEIINDCTEANVLLVAT  359 (520)
Q Consensus       292 ~~-d------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~~~  359 (520)
                      |+ +      ..+.+||+.+.+-...-.......-.+++.. ++.+++.|+.+     ..+.+||+.+..-    ..+..
T Consensus       165 GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~~~~  239 (318)
T 2woz_A          165 GGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKW----EVMTE  239 (318)
T ss_dssp             CCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCE----EECCC
T ss_pred             cCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeE----EECCC
Confidence            65 2      3599999988753222111111111122222 56777777653     3477888876521    22222


Q ss_pred             ecCCcCCEEEEEecCCEEEEEeCC--------------CcEEEEeCCc
Q 009993          360 WIPHTGPVNSLAFEFPWLVSAAGD--------------GKLSLIDVRK  393 (520)
Q Consensus       360 ~~~h~~~v~~l~~~~~~l~s~s~d--------------g~i~vwd~~~  393 (520)
                      +.........+.+++..++.|+.+              ..+.+||+.+
T Consensus       240 ~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~  287 (318)
T 2woz_A          240 FPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK  287 (318)
T ss_dssp             CSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTT
T ss_pred             CCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCC
Confidence            222222234455566677776653              3577777765

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.91  E-value=0.2  Score=44.30  Aligned_cols=161  Identities=11%  Similarity=0.084  Sum_probs=101.2

Q ss_pred             EeccCCCCeEEEEEc--CCEEE-EEecCCeEEEEECCCCcEEEEeeec--cCEEEEe--eCCCEEEEEc-CCeEEEEECC
Q 009993          232 RLWEHEGPITSLALD--LTRIY-SGSWDMTVRVWDRALLKCLKVLRHS--DWVYGLA--PHDTTVASTS-GSDVYIWDTN  303 (520)
Q Consensus       232 ~~~~h~~~v~~l~~~--~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~--~~v~~~~--~~~~~l~~~~-d~~i~iwd~~  303 (520)
                      .+.+-...+..++++  ++.|+ +...++.|...|.. ++.+..+...  ...-.++  .++.++++.. ++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            455666789999995  45555 46678899999997 8888877522  3445555  5566555554 6889999876


Q ss_pred             CCee---eEEeec-----ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeee--e--cCCcCCEEEEE
Q 009993          304 SGCL---LTVVNG-----AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT--W--IPHTGPVNSLA  371 (520)
Q Consensus       304 ~~~~---~~~~~~-----~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~--~--~~h~~~v~~l~  371 (520)
                      ....   +.....     ........++++|.++.|+++.+.....+|.+..............  +  ..+...+.+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            5432   222211     2344568999999998888887776666776652100000111100  0  11234578899


Q ss_pred             ecC---CEEEEEeCCCcEEEEeCCc
Q 009993          372 FEF---PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       372 ~~~---~~l~s~s~dg~i~vwd~~~  393 (520)
                      ++|   .+++.......|.++|...
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~g  204 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLVG  204 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTTC
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCCC
Confidence            987   3566666677888888764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.90  E-value=0.34  Score=46.85  Aligned_cols=147  Identities=8%  Similarity=0.003  Sum_probs=82.2

Q ss_pred             cEEEEEEcc-CCCEEEEEeCCCeEEEEECCCCcEEEEeCC-CCceEEEEecCCCEEEEEeC-CC----cEEEEEcccCcc
Q 009993          144 AVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDGFSIASSKP-LGCTIRAVAADKKLLVAGGT-DG----FIHCWRAVEVLP  216 (520)
Q Consensus       144 ~V~~l~~~~-~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sg~~-dg----~i~vwd~~~~~~  216 (520)
                      ....|+++| ++..|+.+...+.|+.+|+.++........ ....-.++.++++.|+.+.. ++    .+...+. .+..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCce
Confidence            457889998 455566665558899999987654433332 22334566788886666554 22    2333332 2210


Q ss_pred             eeeeccCCccccceEEeccCCCCeEEEEEc---CCEEEEEecCCeEEEEECCCCcEEEEee--eccCEE--EEeeCCCEE
Q 009993          217 HLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVY--GLAPHDTTV  289 (520)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~--~~~~~~~~l  289 (520)
                                 .....+. .......++++   +..+++-..++.|..++..++.......  ......  ++.++++++
T Consensus       217 -----------~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l  284 (430)
T 3tc9_A          217 -----------KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA  284 (430)
T ss_dssp             -----------CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred             -----------eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence                       0001111 12234556673   3444455567899999998765433332  112233  444888855


Q ss_pred             EEEc--CCeEEEEECC
Q 009993          290 ASTS--GSDVYIWDTN  303 (520)
Q Consensus       290 ~~~~--d~~i~iwd~~  303 (520)
                      +.+.  .+.|..++..
T Consensus       285 yv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          285 YIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEEETTTTEEEEEEEE
T ss_pred             EEEECCCCEEEEEeCC
Confidence            5554  6889998765

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.90  E-value=0.18  Score=46.43  Aligned_cols=142  Identities=11%  Similarity=-0.022  Sum_probs=75.3

Q ss_pred             cCCEEEEEec----C-------CeEEEEECCCCcEEEEeeeccCE---EEEeeCCCEEEEEc-C--------CeEEEEEC
Q 009993          246 DLTRIYSGSW----D-------MTVRVWDRALLKCLKVLRHSDWV---YGLAPHDTTVASTS-G--------SDVYIWDT  302 (520)
Q Consensus       246 ~~~~l~s~s~----d-------g~v~iwd~~~~~~~~~~~~~~~v---~~~~~~~~~l~~~~-d--------~~i~iwd~  302 (520)
                      ++..++.|+.    +       ..+..||..+.+-...-..+.+-   ..+..++.+++.|+ +        ..+.+||+
T Consensus        45 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~  124 (315)
T 4asc_A           45 ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDR  124 (315)
T ss_dssp             TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEET
T ss_pred             CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECC
Confidence            6777777774    1       12778898876543221111111   12224666666655 2        45999999


Q ss_pred             CCCeeeE--EeecccccceEEEEecCCCCEEEEEeC-C-----CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC
Q 009993          303 NSGCLLT--VVNGAHVGNTKSLARSHTGDFLFTGGE-D-----GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF  374 (520)
Q Consensus       303 ~~~~~~~--~~~~~~~~~i~~l~~s~~~~~l~tg~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  374 (520)
                      .+.+-..  .+..+ ...- +++. .++++++.|+. +     ..+.+||+.+..-    ..+..+......-.++.+++
T Consensus       125 ~~~~W~~~~~~p~~-r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~  197 (315)
T 4asc_A          125 LSFKWGESDPLPYV-VYGH-TVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW----KELAPMQTARSLFGATVHDG  197 (315)
T ss_dssp             TTTEEEECCCCSSC-CBSC-EEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEE----EECCCCSSCCBSCEEEEETT
T ss_pred             CCCcEeECCCCCCc-ccce-eEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeE----EECCCCCCchhceEEEEECC
Confidence            8864221  11111 1111 2222 35667777765 2     3588999877621    12222222222234455577


Q ss_pred             CEEEEEeCCC-----cEEEEeCCcc
Q 009993          375 PWLVSAAGDG-----KLSLIDVRKL  394 (520)
Q Consensus       375 ~~l~s~s~dg-----~i~vwd~~~~  394 (520)
                      ..++.|+.++     .+.+||+.+.
T Consensus       198 ~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          198 RIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             EEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             EEEEEeccCCCCccceEEEEECCCC
Confidence            7777777654     4788888763

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.88  E-value=0.13  Score=47.68  Aligned_cols=247  Identities=11%  Similarity=0.027  Sum_probs=120.9

Q ss_pred             CEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEE--ecCCeEEEEECCCCcEEEE
Q 009993          195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSG--SWDMTVRVWDRALLKCLKV  272 (520)
Q Consensus       195 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~--s~dg~v~iwd~~~~~~~~~  272 (520)
                      ..++.++.||.|.-.|..+|+. .+..... ..............      .+..++.+  +.||.|..+|..+|.....
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~-~W~~~~~-~~~p~~~~~~~~~~------~~~~~~vv~p~~dG~l~a~~~~~G~~~~~   82 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHI-IWSIEPE-NFQPLIEIQEPSRL------ETYETLIIEPFGDGNIYYFNAHQGLQKLP   82 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEE-EEEECGG-GSCCSEECCCSCTT------TSSEEEEECCSTTTEEEEEETTTEEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcE-EEEecCC-ccCCcEEecCCccc------cCCcEEEEEECCCCEEEEEECCCCcEEee
Confidence            4678888888888888877742 2222111 00011111111100      22334433  6899999999988865554


Q ss_pred             ee-----eccCEEEEe---e-------CCCEEEEEc-CCeEEEEECCCCeeeEEeecccccc------eEEEEec-----
Q 009993          273 LR-----HSDWVYGLA---P-------HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGN------TKSLARS-----  325 (520)
Q Consensus       273 ~~-----~~~~v~~~~---~-------~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~------i~~l~~s-----  325 (520)
                      +.     ...++..-.   .       .+..+++++ ++.+...|+++|+.+..+..+....      ..|....     
T Consensus        83 ~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d  162 (339)
T 2be1_A           83 LSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQ  162 (339)
T ss_dssp             EEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC------------------
T ss_pred             eccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccc
Confidence            44     222233200   1       566677777 9999999999999999987432211      0111110     


Q ss_pred             CCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCC--EE---EEEecCCEEEEEeCCCcEEEEeCCcccccC-C
Q 009993          326 HTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP--VN---SLAFEFPWLVSAAGDGKLSLIDVRKLLRSG-R  399 (520)
Q Consensus       326 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~--v~---~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~  399 (520)
                      ..+..++.|..+..+.+.+ +++. ..+.. ..........  +.   .+.-++.+ +.++.||.|.-+|..++.... .
T Consensus       163 ~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~-~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W~~  238 (339)
T 2be1_A          163 ECENMIVIGKTIFELGIHS-YDGA-SYNVT-YSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARWVS  238 (339)
T ss_dssp             --CCEEEEEEEEEECEECC-TTSC-CCCCE-EEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEEEC
T ss_pred             cCCCeEEEecceEEEEEEC-CCCC-eEEEe-cccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEEEe
Confidence            1245677777777777666 3331 11111 1111111100  00   00001233 557888888888887765443 2


Q ss_pred             CCCCCceeeeeecCCCcccccCcceeeEEEEe----------cCCEEEEecCCCeEEEEeCCchHhHH
Q 009993          400 PTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI----------GADRIVCGGEEGIVRIWNFSQAFEIE  457 (520)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----------~~~~l~sg~~Dg~v~iwd~~~~~~~~  457 (520)
                      ......+.........   . .....+.--.|          ++..++.-+.||.++-+...+--.+-
T Consensus       239 ~~l~sPv~~~~dv~~~---~-~~g~~v~~~~P~~~~~~~~~~~~~v~v~~t~~G~~~Als~~~yp~~~  302 (339)
T 2be1_A          239 PTFPGIIVGLFDVFND---L-RTNENILVPHPFNPGDHESISSNKVYLDQTSNLSWFALSSQNFPSLV  302 (339)
T ss_dssp             CCCSSCEEEEEEEEEE---T-TTTEEEEEECCCCC--------CCEEEEECTTCCEEEEETTTCHHHH
T ss_pred             ecCCCCeEEEEEEEEe---c-CCCCEEEecCCCcccccccccCCeEEEEECCCCcEEEecCCCCceee
Confidence            2222222211111100   0 01111222222          23344546779999999987654444

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.86  E-value=0.6  Score=48.99  Aligned_cols=223  Identities=12%  Similarity=0.109  Sum_probs=130.5

Q ss_pred             cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC----CCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcc
Q 009993          142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK----PLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLP  216 (520)
Q Consensus       142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~----~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~  216 (520)
                      ...|.++.-..+|. |..|+.+| +..||-.+   ...+.    .....|.++. .....|..|+.+| +..+|..+...
T Consensus        21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~---~~~~~~~~~~~~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f   94 (758)
T 3ott_A           21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYS---TQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRY   94 (758)
T ss_dssp             CCCEEEEEECTTSC-EEEEESSC-EEEECSSC---EEECSCTTSTTSSCEEEEEEETTTEEEEEETTE-EEEEETTTTEE
T ss_pred             cceEEEEEECCCCC-EEEEECCC-ccccCCCc---eEEEEccCCCCCceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEE
Confidence            45799998887775 66677777 55666322   22221    1234577765 3455788888766 77888765421


Q ss_pred             eeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee-----eccCEEEEee--CCCEE
Q 009993          217 HLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-----HSDWVYGLAP--HDTTV  289 (520)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-----~~~~v~~~~~--~~~~l  289 (520)
                         ..  .        .......|.++..+.+.|..++.+ -+..+|..+++......     ....|.++..  ++.+.
T Consensus        95 ---~~--~--------~~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW  160 (758)
T 3ott_A           95 ---EQ--P--------ETDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIY  160 (758)
T ss_dssp             ---CC--C--------SCCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEE
T ss_pred             ---EC--c--------ccCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEE
Confidence               00  0        001123577776656677777766 68889987765443211     2346777773  44444


Q ss_pred             EEEcCCeEEEEECCCCeeeEEeeccc----ccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcC
Q 009993          290 ASTSGSDVYIWDTNSGCLLTVVNGAH----VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG  365 (520)
Q Consensus       290 ~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  365 (520)
                       .+..+.+..+|..+++.........    ...|.++...+++..|..|+. +-+..+|..+...    .....+  ...
T Consensus       161 -igt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~----~~~~~l--~~~  232 (758)
T 3ott_A          161 -VGTYNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQI----KQTEAF--HNN  232 (758)
T ss_dssp             -EEETTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEE----EEEEEE--EEE
T ss_pred             -EEeCCCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeE----EeccCC--CCC
Confidence             4555568889988775432211111    224888888777776556654 4588888766521    111111  133


Q ss_pred             CEEEEEecC-CEEEEEeCCCcEEEEeCCc
Q 009993          366 PVNSLAFEF-PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       366 ~v~~l~~~~-~~l~s~s~dg~i~vwd~~~  393 (520)
                      .|.++..+. ..|..|+.+ -+.+++..+
T Consensus       233 ~i~~i~~d~~g~lWigT~~-Gl~~~~~~~  260 (758)
T 3ott_A          233 SIKSLALDGNGDLLAGTDN-GLYVYHNDT  260 (758)
T ss_dssp             EEEEEEECTTCCEEEEETT-EEEEECCTT
T ss_pred             eEEEEEEcCCCCEEEEeCC-ceeEEecCC
Confidence            578887764 566666654 588888765

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.84  E-value=0.36  Score=46.20  Aligned_cols=194  Identities=11%  Similarity=0.084  Sum_probs=109.3

Q ss_pred             ccccEEEEEEccCCCEEE-EEeCCCeEEEEECCCC----cEEEEeC--CCCceEEEEec-CCCEEEEEeCCCcEEEEEcc
Q 009993          141 HTEAVLTVFVLASAKLLF-TSGYDSIVRMWHLEDG----FSIASSK--PLGCTIRAVAA-DKKLLVAGGTDGFIHCWRAV  212 (520)
Q Consensus       141 h~~~V~~l~~~~~~~~l~-sgs~dg~v~vwd~~~~----~~~~~~~--~~~~~v~~~~~-~~~~l~sg~~dg~i~vwd~~  212 (520)
                      ....+..++|++.+..|+ +-...+.|..+++...    .......  .....-.++.+ .+++.++-...+.|.+.++.
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            345778999998655554 4455788999988652    1222222  12223345555 44455555566788887765


Q ss_pred             cCcceeeeccCCccccceEEeccCCCCeEEEEEc--CCEEEEEec--CCeEEEEECCCCcEEEEee-eccCEEEEe--eC
Q 009993          213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSW--DMTVRVWDRALLKCLKVLR-HSDWVYGLA--PH  285 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~--dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~  285 (520)
                      ...             ....+.........|+++  +..|+....  .+.|...++........+. .-.....++  ++
T Consensus       190 g~~-------------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~  256 (400)
T 3p5b_L          190 GVK-------------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLL  256 (400)
T ss_dssp             TCS-------------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETT
T ss_pred             CCc-------------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeC
Confidence            432             111122233456788885  356665542  3678888886543333222 223455555  55


Q ss_pred             CCEEEEEc--CCeEEEEECCCCeeeEEeec-ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993          286 DTTVASTS--GSDVYIWDTNSGCLLTVVNG-AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  348 (520)
Q Consensus       286 ~~~l~~~~--d~~i~iwd~~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~  348 (520)
                      +..|+.+.  .+.|..+|+........... ........+++. .+.++++-...+.|..+|..++
T Consensus       257 ~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G  321 (400)
T 3p5b_L          257 SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  321 (400)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred             CCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence            66666555  68899999875443333221 123445677763 3445556666788888887666

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.79  E-value=0.42  Score=46.22  Aligned_cols=143  Identities=12%  Similarity=0.016  Sum_probs=78.9

Q ss_pred             EEEecC--CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCC-----e
Q 009993          188 RAVAAD--KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM-----T  258 (520)
Q Consensus       188 ~~~~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg-----~  258 (520)
                      .++.++  +..|+.+...+.|+.+|..++.              ...+.........+++  +++ |+.+...+     .
T Consensus       144 vavd~~s~~g~Lyv~D~~~~I~~id~~~g~--------------v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~g  208 (433)
T 4hw6_A          144 MMFDPNSNYDDLYWVGQRDAFRHVDFVNQY--------------VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTG  208 (433)
T ss_dssp             EEECTTTTTCEEEEECBTSCEEEEETTTTE--------------EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEE
T ss_pred             EEEccccCCCEEEEEeCCCCEEEEECCCCE--------------EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccce
Confidence            345553  4555555554788888876552              2233334456788888  556 55444321     2


Q ss_pred             EEEEECCCCc----EEEEeeeccCEEEEee-CCCEEEEEc-CCeEEEEECCCCeeeEEe-ecccccceEEEEecCCCCEE
Q 009993          259 VRVWDRALLK----CLKVLRHSDWVYGLAP-HDTTVASTS-GSDVYIWDTNSGCLLTVV-NGAHVGNTKSLARSHTGDFL  331 (520)
Q Consensus       259 v~iwd~~~~~----~~~~~~~~~~v~~~~~-~~~~l~~~~-d~~i~iwd~~~~~~~~~~-~~~~~~~i~~l~~s~~~~~l  331 (520)
                      +...+...+.    .+..+.++.. .++.+ ++.++++.. ++.|+.+|..++.....+ ..+.......++|+|+++.|
T Consensus       209 v~~~~~~~~~~~~~~~~~~~~P~g-iavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~L  287 (433)
T 4hw6_A          209 IYLFTRASGFTERLSLCNARGAKT-CAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWA  287 (433)
T ss_dssp             EEEECGGGTTCCEEEEEECSSBCC-CEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEE
T ss_pred             EEEEECCCCeeccccccccCCCCE-EEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEE
Confidence            3333332221    1111112222 23446 566555555 688999999877652222 22222334579999999955


Q ss_pred             E-EEeCCCeEEEEEcc
Q 009993          332 F-TGGEDGAIHMYEII  346 (520)
Q Consensus       332 ~-tg~~dg~i~iwd~~  346 (520)
                      + +-...+.|+.+++.
T Consensus       288 Yvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          288 YIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             EEEETTTTEEEEEEBC
T ss_pred             EEEeCCCCEEEEEeCC
Confidence            5 44556889998875

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.70  E-value=0.37  Score=44.36  Aligned_cols=217  Identities=12%  Similarity=-0.048  Sum_probs=120.2

Q ss_pred             CeEEEEECCCCcEEEEeCCCC-ceEEEEecCCCEE-EEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeE
Q 009993          164 SIVRMWHLEDGFSIASSKPLG-CTIRAVAADKKLL-VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPIT  241 (520)
Q Consensus       164 g~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  241 (520)
                      ..|+..|+.+.+......... ..-.++.+.+..| ++-..++.|..+++.+...        . ......+........
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~--------~-~~~~~~~~~~~~~p~   80 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG--------V-SSYDTVISRDIQAPD   80 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------CEEEECSSCSCCC
T ss_pred             CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC--------C-cccEEEEeCCCCCcC
Confidence            458899998776554443322 2223445555544 4555568888888764100        0 001111212223456


Q ss_pred             EEEEc--CCEEE-EEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc--C-CeEEEEECCCCeeeEEee
Q 009993          242 SLALD--LTRIY-SGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS--G-SDVYIWDTNSGCLLTVVN  312 (520)
Q Consensus       242 ~l~~~--~~~l~-s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~--d-~~i~iwd~~~~~~~~~~~  312 (520)
                      .++++  ++.|+ +-...+.|.+.|.........+. .......++  |.+..++.+.  . +.|..+++.... ...+.
T Consensus        81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~  159 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLV  159 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEE
T ss_pred             EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEE
Confidence            77773  45554 44567899999987554433333 223445555  5555554444  3 688888886433 33332


Q ss_pred             cccccceEEEEecCCCCEEEEEe-CCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEE-EeCCCcEEEEe
Q 009993          313 GAHVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVS-AAGDGKLSLID  390 (520)
Q Consensus       313 ~~~~~~i~~l~~s~~~~~l~tg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s-~s~dg~i~vwd  390 (520)
                      .........++++|++..|+.+. ..+.|..+|+.....    ..+............++++...|+. -...+.|..++
T Consensus       160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~----~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~  235 (316)
T 1ijq_A          160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR----KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSAN  235 (316)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce----EEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEe
Confidence            22345678999999877666554 567899999875421    2222211223446777776655544 44567888888


Q ss_pred             CCcc
Q 009993          391 VRKL  394 (520)
Q Consensus       391 ~~~~  394 (520)
                      ..++
T Consensus       236 ~~~g  239 (316)
T 1ijq_A          236 RLTG  239 (316)
T ss_dssp             TTTC
T ss_pred             CCCC
Confidence            7553

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.67  E-value=0.82  Score=47.92  Aligned_cols=228  Identities=13%  Similarity=0.115  Sum_probs=128.7

Q ss_pred             cccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeec
Q 009993          142 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDI  221 (520)
Q Consensus       142 ~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  221 (520)
                      ...|.++....+| .|..|+.+| +..||..+.............|.++..+...|..|+.+ -+..+|..++....+..
T Consensus        62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~  138 (758)
T 3ott_A           62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLTSFDT  138 (758)
T ss_dssp             SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEEEECH
T ss_pred             CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEEEecc
Confidence            3568888777665 566677665 78999877643321111223455555344567777766 57778876543211100


Q ss_pred             cCCccccceEEeccCCCCeEEEEEc-CCEEEEEecCCeEEEEECCCCcEEEEe-e-----eccCEEEEee--CCCEEEEE
Q 009993          222 SGSEKQNTQFRLWEHEGPITSLALD-LTRIYSGSWDMTVRVWDRALLKCLKVL-R-----HSDWVYGLAP--HDTTVAST  292 (520)
Q Consensus       222 ~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~-~-----~~~~v~~~~~--~~~~l~~~  292 (520)
                      .       .  .......|.++..+ .+.|..|+.+ -+..+|..+++..... .     ....|.++..  ++..|..+
T Consensus       139 ~-------~--~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWig  208 (758)
T 3ott_A          139 R-------R--NGLPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIG  208 (758)
T ss_dssp             H-------H--HCCSCSCEEEEEECTTCCEEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEE
T ss_pred             C-------C--CCcCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEE
Confidence            0       0  00123468888874 4556666654 4778887766543221 1     1224777764  35655666


Q ss_pred             cCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeee-----cCCcCCE
Q 009993          293 SGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW-----IPHTGPV  367 (520)
Q Consensus       293 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~h~~~v  367 (520)
                      .++.+..+|..+++...... .....|.++...++|.+.+ |+.+ -+.+++..+...    ......     .-....|
T Consensus       209 t~~Gl~~~~~~~~~~~~~~~-l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~----~~~~~~~~~~~~l~~~~i  281 (758)
T 3ott_A          209 TEGYLFQYFPSTGQIKQTEA-FHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPL----QHIIHDSRNIQSLTNNII  281 (758)
T ss_dssp             EEEEEEEEETTTTEEEEEEE-EEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCC----EEECCCTTCTTSCSCSCE
T ss_pred             ECCCCeEEcCCCCeEEeccC-CCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcE----EEEEcCCCCcCcCCcCeE
Confidence            65678899988775432211 1344688888887777554 4444 477888765421    111100     0123468


Q ss_pred             EEEEecC-CEEEEEeCCCcEEEEe
Q 009993          368 NSLAFEF-PWLVSAAGDGKLSLID  390 (520)
Q Consensus       368 ~~l~~~~-~~l~s~s~dg~i~vwd  390 (520)
                      .++..+. ..|-.|+..| +.+..
T Consensus       282 ~~i~~D~~g~lWiGT~~G-l~~~~  304 (758)
T 3ott_A          282 WNIFADQEHNIWLGTDYG-ISLSR  304 (758)
T ss_dssp             EEEEECTTCCEEEEESSS-EEEEC
T ss_pred             EEEEEcCCCCEEEEeCCc-ccccc
Confidence            8888875 4566677666 55543

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=96.61  E-value=0.52  Score=44.88  Aligned_cols=261  Identities=14%  Similarity=0.068  Sum_probs=138.7

Q ss_pred             eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEecc-CCCCeEEEEE--cCCEEEEEecCCeEEEE
Q 009993          186 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE-HEGPITSLAL--DLTRIYSGSWDMTVRVW  262 (520)
Q Consensus       186 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~s~s~dg~v~iw  262 (520)
                      .+..++......+.-..||.|..|-.......-.  ...........+.. ....+..+++  .....+.-..||.|..|
T Consensus        54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~--g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w  131 (389)
T 3kci_A           54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGI--GGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW  131 (389)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSS--SSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred             ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCC--CCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence            4556665566667778899999996543211000  00000001111111 1223443444  44667777889999999


Q ss_pred             ECCCC-----------cEEEEee--eccCEEEEeeCCCE-EEEEcCCeEEEEECCCC-e----------eeEEeeccccc
Q 009993          263 DRALL-----------KCLKVLR--HSDWVYGLAPHDTT-VASTSGSDVYIWDTNSG-C----------LLTVVNGAHVG  317 (520)
Q Consensus       263 d~~~~-----------~~~~~~~--~~~~v~~~~~~~~~-l~~~~d~~i~iwd~~~~-~----------~~~~~~~~~~~  317 (520)
                      -....           .....+.  ....|..++..... ++...+|.|+.|-.... +          ....+......
T Consensus       132 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~  211 (389)
T 3kci_A          132 GEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGH  211 (389)
T ss_dssp             ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTS
T ss_pred             eCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCC
Confidence            64321           0111111  22367788855544 44455999999975431 1          11122211233


Q ss_pred             ceEEEEecCCCCEEEEEeCCCeEEEEEcccCccc------cceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeC
Q 009993          318 NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE------ANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDV  391 (520)
Q Consensus       318 ~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~------~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~  391 (520)
                      .|..++........+.-..||.|+.|-.......      ....+...-......|..|+....+.+.-..||.|+.|-.
T Consensus       212 ~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~  291 (389)
T 3kci_A          212 RVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGK  291 (389)
T ss_dssp             CEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred             eEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeC
Confidence            5666665443356666678999999975432111      0001111111122358888887787788889999999988


Q ss_pred             CcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHh
Q 009993          392 RKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE  455 (520)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~  455 (520)
                      ....+..........       .+..+..-....|..++......+.-..||.|+.|-....-+
T Consensus       292 n~~GqLG~g~~~~~~-------~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~Gq  348 (389)
T 3kci_A          292 GDYHRLGHGSDDHVR-------RPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQ  348 (389)
T ss_dssp             CGGGTTCSSSCCCEE-------EEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTST
T ss_pred             CCCCCCCCCCCcccc-------CCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCc
Confidence            764433322111110       011111111235667777777667778899999998765443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.57  E-value=0.38  Score=44.22  Aligned_cols=142  Identities=10%  Similarity=0.024  Sum_probs=73.2

Q ss_pred             cCCEEEEEec----CC-------eEEEEECCCCcEEEEeeec---cCEEEEeeCCCEEEEEc-C-------CeEEEEECC
Q 009993          246 DLTRIYSGSW----DM-------TVRVWDRALLKCLKVLRHS---DWVYGLAPHDTTVASTS-G-------SDVYIWDTN  303 (520)
Q Consensus       246 ~~~~l~s~s~----dg-------~v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~l~~~~-d-------~~i~iwd~~  303 (520)
                      ++..++.|+.    ++       .+..||..+.+-...-..+   ..-.....++.+++.|+ +       ..+.+||+.
T Consensus        56 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~  135 (318)
T 2woz_A           56 QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPV  135 (318)
T ss_dssp             SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETT
T ss_pred             CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCC
Confidence            6677777773    12       2778888776543322211   11122235666666665 3       348899998


Q ss_pred             CCeeeEE--eecccccceEEEEecCCCCEEEEEeC------CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCC
Q 009993          304 SGCLLTV--VNGAHVGNTKSLARSHTGDFLFTGGE------DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP  375 (520)
Q Consensus       304 ~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~tg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  375 (520)
                      +.+-...  +...... - +++. .++.+++.|+.      -..+.+||+.+..-    ..+..+........++.+++.
T Consensus       136 ~~~W~~~~~~p~~r~~-~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~  208 (318)
T 2woz_A          136 AAKWSEVKNLPIKVYG-H-NVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW----KDLAPMKTPRSMFGVAIHKGK  208 (318)
T ss_dssp             TTEEEEECCCSSCEES-C-EEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEE----EEECCCSSCCBSCEEEEETTE
T ss_pred             CCCEeECCCCCCcccc-c-EEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEE----EECCCCCCCcccceEEEECCE
Confidence            7653322  1111111 1 1222 35666676664      23588999877631    122222222222344555677


Q ss_pred             EEEEEeCC-----CcEEEEeCCcc
Q 009993          376 WLVSAAGD-----GKLSLIDVRKL  394 (520)
Q Consensus       376 ~l~s~s~d-----g~i~vwd~~~~  394 (520)
                      .++.|+.+     ..+.+||+.+.
T Consensus       209 iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          209 IVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             EEEEEEEETTEEEEEEEEEETTTC
T ss_pred             EEEEcCcCCCCccceEEEEECCCC
Confidence            77777653     34678887763

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.56  E-value=0.03  Score=51.94  Aligned_cols=184  Identities=13%  Similarity=0.060  Sum_probs=104.4

Q ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeCCC-CceEEEEe----cCCCEEEEE--eCCCcEEEEEcccCcceeeeccCCcc
Q 009993          154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPL-GCTIRAVA----ADKKLLVAG--GTDGFIHCWRAVEVLPHLFDISGSEK  226 (520)
Q Consensus       154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~----~~~~~l~sg--~~dg~i~vwd~~~~~~~~~~~~~~~~  226 (520)
                      +.+++.++.||.|.-.|..+|+.+.++... ..+.....    +.+..++.+  +.||.|..++..+|... +.....  
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~-~~~~~~--   86 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK-LPLSIR--   86 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE-EEEEHH--
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE-eeeccc--
Confidence            347889999999999999999999888654 12222222    112244444  58999999998776321 111000  


Q ss_pred             ccceEEeccCCCCeEE---EEE-------cCCEEEEEecCCeEEEEECCCCcEEEEeeeccC--------EEEEe-----
Q 009993          227 QNTQFRLWEHEGPITS---LAL-------DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDW--------VYGLA-----  283 (520)
Q Consensus       227 ~~~~~~~~~h~~~v~~---l~~-------~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~--------v~~~~-----  283 (520)
                           .+ -...++..   ..+       .++.+++|+.+|.+...|+.+|+.+..+....+        ..|..     
T Consensus        87 -----~l-v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~  160 (339)
T 2be1_A           87 -----QL-VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIK  160 (339)
T ss_dssp             -----HH-HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC----------------
T ss_pred             -----cc-eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccc
Confidence                 00 01122221   001       567899999999999999999999999873221        11111     


Q ss_pred             --eCCCEEEEEc-CCeEEEEECCCCeeeEEeecc-ccc-ceE-----EEEecCCCCEEEEEeCCCeEEEEEcccCc
Q 009993          284 --PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGA-HVG-NTK-----SLARSHTGDFLFTGGEDGAIHMYEIINDC  349 (520)
Q Consensus       284 --~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~-~~~-~i~-----~l~~s~~~~~l~tg~~dg~i~iwd~~~~~  349 (520)
                        ..+..++.+. +..+.+.+ ++|+ +..+... ... .+.     .-..+.++.+ +.++.||.|.-+|..++.
T Consensus       161 ~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~  233 (339)
T 2be1_A          161 LQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRI  233 (339)
T ss_dssp             ----CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCC
T ss_pred             cccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCc
Confidence              1234566555 66777766 4454 2222100 000 000     0001123555 457889999999988773

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.54  E-value=0.48  Score=43.78  Aligned_cols=181  Identities=15%  Similarity=0.196  Sum_probs=107.0

Q ss_pred             cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE------cCCE--EEEEe--c--CCeE
Q 009993          192 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL------DLTR--IYSGS--W--DMTV  259 (520)
Q Consensus       192 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~------~~~~--l~s~s--~--dg~v  259 (520)
                      |....++.....+-+.+||+ ++.             .+..+..  +.++.+..      .+..  ++.++  .  +++|
T Consensus        38 p~~s~ii~t~k~~gL~Vydl-~G~-------------~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l  101 (355)
T 3amr_A           38 PQNSKLITTNKKSGLVVYSL-DGK-------------MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTI  101 (355)
T ss_dssp             GGGCEEEEEETTTEEEEEET-TSC-------------EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEE
T ss_pred             CCccEEEEEcCCCCEEEEcC-CCc-------------EEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeE
Confidence            34556666677788999999 442             2222321  44555444      2322  33333  3  5789


Q ss_pred             EEEEC--CCCcEEEEeee---c-----cCEE--EE--ee-CCC-EEEEEc-CCeEEEEECC-------CCeeeEEeeccc
Q 009993          260 RVWDR--ALLKCLKVLRH---S-----DWVY--GL--AP-HDT-TVASTS-GSDVYIWDTN-------SGCLLTVVNGAH  315 (520)
Q Consensus       260 ~iwd~--~~~~~~~~~~~---~-----~~v~--~~--~~-~~~-~l~~~~-d~~i~iwd~~-------~~~~~~~~~~~~  315 (520)
                      .+|++  .++. +..+..   +     ..+.  |+  .+ .+. ++++.. +|.+..|++.       +.+.++.+.  -
T Consensus       102 ~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~--l  178 (355)
T 3amr_A          102 EIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK--M  178 (355)
T ss_dssp             EEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE--C
T ss_pred             EEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec--C
Confidence            99976  3443 444421   1     2233  33  23 344 455555 8999998882       345677775  3


Q ss_pred             ccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec-CC-cCCEEEEEec--C---CEEEEEe-CCCcEE
Q 009993          316 VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI-PH-TGPVNSLAFE--F---PWLVSAA-GDGKLS  387 (520)
Q Consensus       316 ~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~h-~~~v~~l~~~--~---~~l~s~s-~dg~i~  387 (520)
                      .+.+..+...+....|+.+-++.-|..|+.+.... .....+..+. ++ ...+..|+..  +   .+|++++ .+++..
T Consensus       179 gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~-~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~  257 (355)
T 3amr_A          179 NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGG-SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYA  257 (355)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSC-SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEE
T ss_pred             CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCC-CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEE
Confidence            56788999999999999999997666666442210 1112333331 22 2368888872  2   3677666 577999


Q ss_pred             EEeCC
Q 009993          388 LIDVR  392 (520)
Q Consensus       388 vwd~~  392 (520)
                      +||..
T Consensus       258 Vydr~  262 (355)
T 3amr_A          258 IYDRQ  262 (355)
T ss_dssp             EEESS
T ss_pred             EEECC
Confidence            99996

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.53  E-value=0.43  Score=43.73  Aligned_cols=200  Identities=10%  Similarity=0.042  Sum_probs=105.1

Q ss_pred             EEEEEccCCCEEEEEe-CCCeEEEEECCCCcEEEE-eCC----CCc--eEE--EE---ecCCCEEEEEe-----------
Q 009993          146 LTVFVLASAKLLFTSG-YDSIVRMWHLEDGFSIAS-SKP----LGC--TIR--AV---AADKKLLVAGG-----------  201 (520)
Q Consensus       146 ~~l~~~~~~~~l~sgs-~dg~v~vwd~~~~~~~~~-~~~----~~~--~v~--~~---~~~~~~l~sg~-----------  201 (520)
                      -+.+|++....++.++ ..++|..|+...+..... +.+    ...  .+.  .+   .+++.++++..           
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            3678887555566555 799999999976644333 322    111  122  33   35555666433           


Q ss_pred             --CCCcEEEEEcc---cCccee-eeccCCccccceEEecc-CCCCeEEEEE--cCCEEEEEecC-CeEEEEECCCCcEEE
Q 009993          202 --TDGFIHCWRAV---EVLPHL-FDISGSEKQNTQFRLWE-HEGPITSLAL--DLTRIYSGSWD-MTVRVWDRALLKCLK  271 (520)
Q Consensus       202 --~dg~i~vwd~~---~~~~~~-~~~~~~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~s~s~d-g~v~iwd~~~~~~~~  271 (520)
                        .+..|..+|+.   ++.... .++.....  ......+ -......++.  +|+..++++.. +.|...+........
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~--~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~  173 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQD--EFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVST  173 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHH--HHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEE
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccc--cccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEee
Confidence              25778889987   553211 11100000  0000001 1124677888  67888888888 887777765442221


Q ss_pred             Eeeec------cCEEEEe--eCCCEEEEEc-CCeEEEEECCCCee--eEEeecc---cccceEEE-EecCCCCE-EEEEe
Q 009993          272 VLRHS------DWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCL--LTVVNGA---HVGNTKSL-ARSHTGDF-LFTGG  335 (520)
Q Consensus       272 ~~~~~------~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~--~~~~~~~---~~~~i~~l-~~s~~~~~-l~tg~  335 (520)
                      .....      ...+.+.  |+++.|++.. ++.+..+|+.+...  +..-..+   .......+ ..-.+|+. +++..
T Consensus       174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~  253 (334)
T 2p9w_A          174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGAR  253 (334)
T ss_dssp             EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEE
T ss_pred             eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcC
Confidence            11111      1123444  8898888887 89999999885322  1110001   11123333 22236766 55555


Q ss_pred             CCCeEEEEEccc
Q 009993          336 EDGAIHMYEIIN  347 (520)
Q Consensus       336 ~dg~i~iwd~~~  347 (520)
                      ..+.+.+.+...
T Consensus       254 ~~~~~~l~S~Dg  265 (334)
T 2p9w_A          254 APYAISFRSWDN  265 (334)
T ss_dssp             TTEEEEEECSST
T ss_pred             CCCEEEEECCCC
Confidence            566665555444

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.51  E-value=1  Score=47.14  Aligned_cols=193  Identities=11%  Similarity=0.076  Sum_probs=107.9

Q ss_pred             cccEEEEEEccCCC-EEEEEeCCCeEEEEECCCC----cEEEEeC--CCCceEEEEecCCC-EEEEEeCCCcEEEEEccc
Q 009993          142 TEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDG----FSIASSK--PLGCTIRAVAADKK-LLVAGGTDGFIHCWRAVE  213 (520)
Q Consensus       142 ~~~V~~l~~~~~~~-~l~sgs~dg~v~vwd~~~~----~~~~~~~--~~~~~v~~~~~~~~-~l~sg~~dg~i~vwd~~~  213 (520)
                      ...+.+|+|++.+. ++++-...+.|+.+++...    .....+.  .....-+++.+.+. ++++-...+.|.+.++..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            45677899988544 4555556788988888652    1122222  12233456665554 444555668888888754


Q ss_pred             CcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEec--CCeEEEEECCCCcEEEEee-eccCEEEEe--eCC
Q 009993          214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSW--DMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHD  286 (520)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~--dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~  286 (520)
                      ..             ....+.........|++++  .+|+....  .+.|...++........+. .-.....|+  +.+
T Consensus       503 ~~-------------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~  569 (791)
T 3m0c_C          503 VK-------------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLS  569 (791)
T ss_dssp             SS-------------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTT
T ss_pred             Ce-------------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCC
Confidence            32             1111222334578888853  56665543  2678888886544433333 224555665  455


Q ss_pred             CEEEEEc--CCeEEEEECCCCeeeEEeec-ccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993          287 TTVASTS--GSDVYIWDTNSGCLLTVVNG-AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  348 (520)
Q Consensus       287 ~~l~~~~--d~~i~iwd~~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~  348 (520)
                      ..|+.+.  .+.|..+|+........+.. +......+|++.. +.++++-...+.|...|..++
T Consensus       570 ~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          570 GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred             CeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCC
Confidence            5555554  57899999865544333321 1223445666642 334445555677888876666

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.33  E-value=0.012  Score=61.13  Aligned_cols=195  Identities=13%  Similarity=0.026  Sum_probs=103.2

Q ss_pred             CCeEEEEEc--CCEEEEEe-cCCeEEEEECCC----CcEEEEee-eccCEEEEe--eC-CCEEEEEc-CCeEEEEECCCC
Q 009993          238 GPITSLALD--LTRIYSGS-WDMTVRVWDRAL----LKCLKVLR-HSDWVYGLA--PH-DTTVASTS-GSDVYIWDTNSG  305 (520)
Q Consensus       238 ~~v~~l~~~--~~~l~s~s-~dg~v~iwd~~~----~~~~~~~~-~~~~v~~~~--~~-~~~l~~~~-d~~i~iwd~~~~  305 (520)
                      ..+..++|+  .+.|+.+. ..+.|+.+++.+    ......+. .......++  +. ++++++-. .+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            345567774  45665554 457899998875    22222221 111122333  33 44444444 688999998765


Q ss_pred             eeeEEeecccccceEEEEecCCCCEEEEEeC--CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--C-EEEEE
Q 009993          306 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGE--DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P-WLVSA  380 (520)
Q Consensus       306 ~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~  380 (520)
                      .....+. ........++++|.+.+|+....  .+.|..+++....      ........-...+.|++++  . ++++-
T Consensus       486 ~~~~l~~-~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~------~~~l~~~~l~~PnGlavd~~~~~LY~aD  558 (699)
T 1n7d_A          486 KRKTLFR-EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD------IYSLVTENIQWPNGITLDLLSGRLYWVD  558 (699)
T ss_dssp             CEEEECC-CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC------CCEESCSSCSSCCCEEECTTTCCEEEEE
T ss_pred             ceEEEEe-CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC------eeEEEeCCCCCccEEEEeccCCEEEEEe
Confidence            4433332 22345678899997665554433  2678877775441      1111112233567888975  3 44555


Q ss_pred             eCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEeCCchHhH
Q 009993          381 AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEI  456 (520)
Q Consensus       381 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~~  456 (520)
                      +..+.|.++++......          .+..  ....  ..+.   ..+.++++ ++++....+.|..++..++..+
T Consensus       559 ~~~~~I~~~d~dG~~~~----------~~~~--~~~~--~~~P---~glavd~~~lywtd~~~~~V~~~d~~~G~~~  618 (699)
T 1n7d_A          559 SKLHSISSIDVNGGNRK----------TILE--DEKR--LAHP---FSLAVFEDKVFWTDIINEAIFSANRLTGSDV  618 (699)
T ss_dssp             TTTTEEEEECSSSSCCE----------EECC--CSSS--CSSC---CCCEEETTEEEEECSTTTCEEEEETTTEEEE
T ss_pred             cCCCeEEEEccCCCceE----------EEEe--cCCc--CCCc---eEeEEECCEEEEEeCCCCeEEEEEccCCCce
Confidence            56778999998642110          0000  0000  0111   12233344 5666667789999998766544

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.33  E-value=0.25  Score=46.30  Aligned_cols=93  Identities=9%  Similarity=-0.010  Sum_probs=45.8

Q ss_pred             cCCCEEEEEeCC-CcEEEEEcccCcceeeeccCCccccceEEec-cCCCCeEEEEEcCCEEEEEec-C---------CeE
Q 009993          192 ADKKLLVAGGTD-GFIHCWRAVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLALDLTRIYSGSW-D---------MTV  259 (520)
Q Consensus       192 ~~~~~l~sg~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~l~s~s~-d---------g~v  259 (520)
                      .++.+++.|+.+ ..+.++|..+....         ......+. .....-....+++..++.|+. +         ..+
T Consensus        18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~---------W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v   88 (357)
T 2uvk_A           18 DNDTVYIGLGSAGTAWYKLDTQAKDKK---------WTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDV   88 (357)
T ss_dssp             ETTEEEEECGGGTTCEEEEETTSSSCC---------EEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCE
T ss_pred             ECCEEEEEeCcCCCeEEEEccccCCCC---------eeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccE
Confidence            356666666544 45777777531110         11111111 111222233446667777765 2         468


Q ss_pred             EEEECCCCcEEEEeeec----cCEEEEeeCCCEEEEEc
Q 009993          260 RVWDRALLKCLKVLRHS----DWVYGLAPHDTTVASTS  293 (520)
Q Consensus       260 ~iwd~~~~~~~~~~~~~----~~v~~~~~~~~~l~~~~  293 (520)
                      .+||..+.+-...-...    ..-.++..++++++.|+
T Consensus        89 ~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG  126 (357)
T 2uvk_A           89 HKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGG  126 (357)
T ss_dssp             EEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEEC
T ss_pred             EEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeC
Confidence            89998876533322211    11223336777777776

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.24  E-value=0.0019  Score=65.97  Aligned_cols=38  Identities=13%  Similarity=0.280  Sum_probs=29.5

Q ss_pred             ccccccCCCHHHHHHHccCCC-hhhhHHHhhhhhhHHHh
Q 009993           60 HRSTITDLPPALISEILNCLD-PKELGIVSCVSPILHRL   97 (520)
Q Consensus        60 ~~~~~~~LP~el~~~i~~~L~-~~~l~~~s~v~~~~~~~   97 (520)
                      +.|.+..||+|++.+||+||+ .+++.+++.|||+|+.+
T Consensus         2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            457799999999999999999 99999999999999998

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.08  E-value=0.33  Score=45.47  Aligned_cols=226  Identities=12%  Similarity=0.013  Sum_probs=109.3

Q ss_pred             CCCEEEEEeCC-CeEEEEECCC--Cc--EEEEeC-CCCceEEEEecCCCEEEEEeC-C---------CcEEEEEcccCcc
Q 009993          153 SAKLLFTSGYD-SIVRMWHLED--GF--SIASSK-PLGCTIRAVAADKKLLVAGGT-D---------GFIHCWRAVEVLP  216 (520)
Q Consensus       153 ~~~~l~sgs~d-g~v~vwd~~~--~~--~~~~~~-~~~~~v~~~~~~~~~l~sg~~-d---------g~i~vwd~~~~~~  216 (520)
                      ++.+++.|+.+ ..+.++|..+  .+  .+..+. .......+...++.+++.|+. +         ..+.+||..+..-
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W   98 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW   98 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence            56666777643 4688889864  22  222222 111111222346777777765 2         4577888766532


Q ss_pred             eeeeccCCccccceEEec-cCCCCeEEEEEcCCEEEEEecC---------------------------------------
Q 009993          217 HLFDISGSEKQNTQFRLW-EHEGPITSLALDLTRIYSGSWD---------------------------------------  256 (520)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~l~s~s~d---------------------------------------  256 (520)
                      ...           ..+. .....-.++..++..++.|+.+                                       
T Consensus        99 ~~~-----------~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (357)
T 2uvk_A           99 VKL-----------MSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFN  167 (357)
T ss_dssp             EEC-----------SCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCC
T ss_pred             EEC-----------CCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCc
Confidence            111           0111 1112223344577777777754                                       


Q ss_pred             CeEEEEECCCCcEEEEee--eccC--EEEEeeCCCEEEEEc-C------CeEEEEEC--CCCeeeEEeec-ccc-cceEE
Q 009993          257 MTVRVWDRALLKCLKVLR--HSDW--VYGLAPHDTTVASTS-G------SDVYIWDT--NSGCLLTVVNG-AHV-GNTKS  321 (520)
Q Consensus       257 g~v~iwd~~~~~~~~~~~--~~~~--v~~~~~~~~~l~~~~-d------~~i~iwd~--~~~~~~~~~~~-~~~-~~i~~  321 (520)
                      ..+.+||..+.+-...-.  ....  ...+..++++++.|+ +      ..+.+||+  .+.+- ..+.. ... .....
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W-~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKW-NKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEE-EECCCSSTTTCCBSC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcE-EecCCCCCCcccccc
Confidence            578999988765433322  1111  222335666666654 2      35777887  43321 11111 011 11111


Q ss_pred             EEecCCCCEEEEEeCC----------------------CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEE
Q 009993          322 LARSHTGDFLFTGGED----------------------GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVS  379 (520)
Q Consensus       322 l~~s~~~~~l~tg~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s  379 (520)
                      .+...++.+++.|+.+                      ..+.+||+.+..-    ..+..+......-.++.+++..++.
T Consensus       247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~i~v~  322 (357)
T 2uvk_A          247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKW----DKSGELSQGRAYGVSLPWNNSLLII  322 (357)
T ss_dssp             EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---C----EEEEECSSCCBSSEEEEETTEEEEE
T ss_pred             eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCce----eeCCCCCCCcccceeEEeCCEEEEE
Confidence            1122256677777632                      2477888876531    2233332222233445567788888


Q ss_pred             EeCCC------cEEEEeCCcc
Q 009993          380 AAGDG------KLSLIDVRKL  394 (520)
Q Consensus       380 ~s~dg------~i~vwd~~~~  394 (520)
                      |+.++      .|.++++++.
T Consensus       323 GG~~~~~~~~~~v~~l~~~~~  343 (357)
T 2uvk_A          323 GGETAGGKAVTDSVLITVKDN  343 (357)
T ss_dssp             EEECGGGCEEEEEEEEEC-CC
T ss_pred             eeeCCCCCEeeeEEEEEEcCc
Confidence            88653      3445566653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.02  E-value=0.25  Score=46.79  Aligned_cols=143  Identities=13%  Similarity=0.136  Sum_probs=91.2

Q ss_pred             cCCEEEEEecCCeEEEEECCCCcEEEEeeec-----cCEEE--EeeCCCEEEEEcCCeEEEEECCCCe------------
Q 009993          246 DLTRIYSGSWDMTVRVWDRALLKCLKVLRHS-----DWVYG--LAPHDTTVASTSGSDVYIWDTNSGC------------  306 (520)
Q Consensus       246 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-----~~v~~--~~~~~~~l~~~~d~~i~iwd~~~~~------------  306 (520)
                      ++..++.+- ++.||.-++.....-+.+..+     ..|..  ++++|++++..++..|.|..+..+.            
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~  109 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAF  109 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccccc
Confidence            666666655 478888887754444444422     13433  4499999999999999999987331            


Q ss_pred             eeEEeecc-----cccceEEEEecCC---CCEEEEEeCCCeEEEEEcccCccccc-ee---eeeeecCCcCCEEEEEecC
Q 009993          307 LLTVVNGA-----HVGNTKSLARSHT---GDFLFTGGEDGAIHMYEIINDCTEAN-VL---LVATWIPHTGPVNSLAFEF  374 (520)
Q Consensus       307 ~~~~~~~~-----~~~~i~~l~~s~~---~~~l~tg~~dg~i~iwd~~~~~~~~~-~~---~~~~~~~h~~~v~~l~~~~  374 (520)
                      ..+.+.-+     ...+|..+.|+|-   +..|++-..|+.|++||+........ ..   ...........|.+++|.+
T Consensus       110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~  189 (452)
T 3pbp_A          110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK  189 (452)
T ss_dssp             EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT
T ss_pred             ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC
Confidence            11223221     2467999999994   56899999999999999987422111 00   0011122335788999965


Q ss_pred             --C--EEEEEeCCCcEEEE
Q 009993          375 --P--WLVSAAGDGKLSLI  389 (520)
Q Consensus       375 --~--~l~s~s~dg~i~vw  389 (520)
                        -  |+++.+.+|.|+-.
T Consensus       190 ~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          190 DGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             TSSCEEEEECTTSCEEEEE
T ss_pred             CCcEEEEEecCCCCCEEEE
Confidence              2  44445577888654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.98  E-value=0.93  Score=41.50  Aligned_cols=160  Identities=13%  Similarity=0.067  Sum_probs=99.4

Q ss_pred             eccCCCCeEEEEEcC--CEEEEEe-cCCeEEEEECCCCcEEEE-eee-----c--cCEEEEe-----eCCCEEEEEc---
Q 009993          233 LWEHEGPITSLALDL--TRIYSGS-WDMTVRVWDRALLKCLKV-LRH-----S--DWVYGLA-----PHDTTVASTS---  293 (520)
Q Consensus       233 ~~~h~~~v~~l~~~~--~~l~s~s-~dg~v~iwd~~~~~~~~~-~~~-----~--~~v~~~~-----~~~~~l~~~~---  293 (520)
                      +......-.++.|+.  ..++.++ ..++|..||...+..... +..     .  ..+..+.     ++++++++..   
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~   87 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK   87 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence            334445556778853  6666666 789999999976644333 211     0  1234444     4556666433   


Q ss_pred             -----------CCeEEEEECC---CCeeeEEeecc-c-----------ccceEEEEecCCCCEEEEEeCC-CeEEEEEcc
Q 009993          294 -----------GSDVYIWDTN---SGCLLTVVNGA-H-----------VGNTKSLARSHTGDFLFTGGED-GAIHMYEII  346 (520)
Q Consensus       294 -----------d~~i~iwd~~---~~~~~~~~~~~-~-----------~~~i~~l~~s~~~~~l~tg~~d-g~i~iwd~~  346 (520)
                                 +..|..||+.   +++.+...... .           ......++..++|+..++++.. +.|...+..
T Consensus        88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred             cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence                       4669999999   78776655421 1           1248899999999999999888 887777665


Q ss_pred             cCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993          347 NDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       347 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  393 (520)
                      .... ................+.|+++|  ..|++....|.|..+|+.+
T Consensus       168 G~~~-~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          168 GKTV-STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             SCCE-EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CCEE-eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            4311 00000000011122367889975  5777776699999999884

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.81  E-value=1.9  Score=43.81  Aligned_cols=191  Identities=12%  Similarity=-0.028  Sum_probs=112.9

Q ss_pred             ccEEEEEEccCCCEEE-EEeCCCeEEEEECCCCcEEEEeCC--CCceEEEEecCCC-EEEEEeCCCcEEEEEcccCccee
Q 009993          143 EAVLTVFVLASAKLLF-TSGYDSIVRMWHLEDGFSIASSKP--LGCTIRAVAADKK-LLVAGGTDGFIHCWRAVEVLPHL  218 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~-sgs~dg~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~  218 (520)
                      ..+..++|++.+..|+ +-..++.|..+++........+..  ....-.++.+.+. +.++-...+.|.+.++.....  
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~--  114 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR--  114 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC--
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE--
Confidence            4578999998655555 555678999999875533332321  2233455665544 445555567888888754321  


Q ss_pred             eeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEec--CCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEE
Q 009993          219 FDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSW--DMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVAST  292 (520)
Q Consensus       219 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~  292 (520)
                                 .......-.....|++++  ..|+....  .+.|...++...........-.....+.  +++..|+.+
T Consensus       115 -----------~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~a  183 (628)
T 4a0p_A          115 -----------QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWT  183 (628)
T ss_dssp             -----------EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEE
T ss_pred             -----------EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEE
Confidence                       111112334567888863  56666553  4678888876554333333334455555  555665555


Q ss_pred             c--CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCc
Q 009993          293 S--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC  349 (520)
Q Consensus       293 ~--d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~  349 (520)
                      .  .+.|..+|+..... ..+. ........+++.. +.++++-...+.|...|..++.
T Consensus       184 D~~~~~I~~~d~dG~~~-~v~~-~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          184 DLDTNLIESSNMLGLNR-EVIA-DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             ETTTTEEEEEETTSCSC-EEEE-ECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred             ECCCCEEEEEcCCCCce-EEee-ccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence            5  68899999876543 2332 2334556778764 4455555567889988876653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.76  E-value=0.075  Score=55.09  Aligned_cols=219  Identities=11%  Similarity=-0.051  Sum_probs=112.4

Q ss_pred             CCeEEEEECCCCcEEEEeCCC-CceEEEEecCCCEEEEE-eCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCe
Q 009993          163 DSIVRMWHLEDGFSIASSKPL-GCTIRAVAADKKLLVAG-GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPI  240 (520)
Q Consensus       163 dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  240 (520)
                      .+.|+..++.+......+... ...-.++.+.+..|+.. ...+.|..+++.+...      +..   ....+.......
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~------~~~---~~~~i~~~~~~P  455 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------VSS---YDTVISRDIQAP  455 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-------CC---CCCBCCSCC--C
T ss_pred             ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCC------Ccc---eEEEEeCCCCCc
Confidence            456888888776554433321 22223556655555554 3457888888754100      000   000010111223


Q ss_pred             EEEEEc--C-CEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEE--eeCCCEEEEEc--C-CeEEEEECCCCeeeEEe
Q 009993          241 TSLALD--L-TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGL--APHDTTVASTS--G-SDVYIWDTNSGCLLTVV  311 (520)
Q Consensus       241 ~~l~~~--~-~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~--d-~~i~iwd~~~~~~~~~~  311 (520)
                      ..|+++  + +++++-...+.|.++++........+. .......+  .+.+..|+.+.  . +.|..+++...... .+
T Consensus       456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~-~l  534 (699)
T 1n7d_A          456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SL  534 (699)
T ss_dssp             CCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-EE
T ss_pred             ceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-EE
Confidence            445653  3 344444566889999987654443333 11222333  35444444443  2 67888877543322 22


Q ss_pred             ecccccceEEEEecCCCCEEE-EEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEE-EEeCCCcEEEE
Q 009993          312 NGAHVGNTKSLARSHTGDFLF-TGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLV-SAAGDGKLSLI  389 (520)
Q Consensus       312 ~~~~~~~i~~l~~s~~~~~l~-tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~-s~s~dg~i~vw  389 (520)
                      ........+.|+++|++..|+ +-+..+.|..+++.....    ..+............|+++...|+ +....+.|..+
T Consensus       535 ~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~----~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~  610 (699)
T 1n7d_A          535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR----KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSA  610 (699)
T ss_dssp             SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC----EEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEE
T ss_pred             EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce----EEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEE
Confidence            212234567899998765554 445567899999865421    112111112233455666665444 44556889999


Q ss_pred             eCCccc
Q 009993          390 DVRKLL  395 (520)
Q Consensus       390 d~~~~~  395 (520)
                      +..++.
T Consensus       611 d~~~G~  616 (699)
T 1n7d_A          611 NRLTGS  616 (699)
T ss_dssp             ETTTEE
T ss_pred             EccCCC
Confidence            976543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.73  E-value=2.1  Score=43.54  Aligned_cols=150  Identities=11%  Similarity=-0.014  Sum_probs=87.0

Q ss_pred             CCCeEEEEEc--CCEEEEEe-cCCeEEEEECCCCcE-EEEee-eccCEEEEe--eCCCEEEEE-c-CCeEEEEECCCCee
Q 009993          237 EGPITSLALD--LTRIYSGS-WDMTVRVWDRALLKC-LKVLR-HSDWVYGLA--PHDTTVAST-S-GSDVYIWDTNSGCL  307 (520)
Q Consensus       237 ~~~v~~l~~~--~~~l~s~s-~dg~v~iwd~~~~~~-~~~~~-~~~~v~~~~--~~~~~l~~~-~-d~~i~iwd~~~~~~  307 (520)
                      ...+..++++  ++.|+.+. ..+.|..+++..... ...+. .-.....++  +.+..++.+ . .+.|.+.++.....
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  118 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence            3456778873  45665554 467888888875532 22222 224455665  434544444 4 68999999876543


Q ss_pred             eEEeecccccceEEEEecCCCCEEEEEeC--CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEE-eC
Q 009993          308 LTVVNGAHVGNTKSLARSHTGDFLFTGGE--DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSA-AG  382 (520)
Q Consensus       308 ~~~~~~~~~~~i~~l~~s~~~~~l~tg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~-s~  382 (520)
                      ...+. ........+++.|.+..|+....  .+.|...++....      ........-...+.|++++  ..|+.+ ..
T Consensus       119 ~~l~~-~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~------~~~l~~~~~~~P~Glald~~~~~LY~aD~~  191 (619)
T 3s94_A          119 KVLFW-QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS------RFIIINSEIYWPNGLTLDYEEQKLYWADAK  191 (619)
T ss_dssp             EEEEC-SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS------CEEEECSSCSSEEEEEEETTTTEEEEEETT
T ss_pred             EEEEe-CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc------eEEEEeCCCCCCcEEEEEccCCEEEEEeCC
Confidence            33332 34456778999997666655543  4667777765542      1111222345678899975  455554 45


Q ss_pred             CCcEEEEeCCc
Q 009993          383 DGKLSLIDVRK  393 (520)
Q Consensus       383 dg~i~vwd~~~  393 (520)
                      .+.|...|+..
T Consensus       192 ~~~I~~~~~dG  202 (619)
T 3s94_A          192 LNFIHKSNLDG  202 (619)
T ss_dssp             TCCEEEESSSC
T ss_pred             CCeEEEecCCC
Confidence            67899988865

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.56  E-value=2.4  Score=43.07  Aligned_cols=193  Identities=13%  Similarity=0.044  Sum_probs=103.4

Q ss_pred             cccEEEEEEccCCCEEEEE-eCCCeEEEEECCCCcE-EEEeCC--CCceEEEEecCCC-EEEEEeCCCcEEEEEcccCcc
Q 009993          142 TEAVLTVFVLASAKLLFTS-GYDSIVRMWHLEDGFS-IASSKP--LGCTIRAVAADKK-LLVAGGTDGFIHCWRAVEVLP  216 (520)
Q Consensus       142 ~~~V~~l~~~~~~~~l~sg-s~dg~v~vwd~~~~~~-~~~~~~--~~~~v~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~  216 (520)
                      -+....++|++.+..|+-+ ...+.|..+++..... ...+..  ....-.++.+.+. +.++-...+.|.+.++.....
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  118 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence            4457899999866655544 4467898899875532 222222  2333455666445 445555678898888765421


Q ss_pred             eeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEec--CCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEE
Q 009993          217 HLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSW--DMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTV  289 (520)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~--dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l  289 (520)
                      .             ......-.....|++++  +.|+....  .+.|...++.......... .-.....+.  +++..|
T Consensus       119 ~-------------~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~L  185 (619)
T 3s94_A          119 K-------------VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKL  185 (619)
T ss_dssp             E-------------EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEE
T ss_pred             E-------------EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEE
Confidence            1             11112334456778843  56665553  3567667765433222222 233445555  545555


Q ss_pred             EEEc--CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCc
Q 009993          290 ASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC  349 (520)
Q Consensus       290 ~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~  349 (520)
                      +.+.  .+.|..+|+.......... +.......+++..+ ..+++-...+.|...|..++.
T Consensus       186 Y~aD~~~~~I~~~~~dG~~~~~~~~-~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          186 YWADAKLNFIHKSNLDGTNRQAVVK-GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             EEEETTTCCEEEESSSCCEEC----------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred             EEEeCCCCeEEEecCCCCccEEEEe-CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence            5554  5789999987654433322 12223346676544 444454567789888887663

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=95.51  E-value=1.3  Score=39.81  Aligned_cols=221  Identities=15%  Similarity=0.060  Sum_probs=121.4

Q ss_pred             eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECC
Q 009993          186 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRA  265 (520)
Q Consensus       186 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~  265 (520)
                      .|..++......+.-. ||.|..|-.......-.         +    ......|..++......+.-. ||.|..|-..
T Consensus        25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~---------p----~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n   89 (282)
T 3qhy_B           25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTM---------P----AATQSGVDAIAAGNYHSLALK-DGEVIAWGGN   89 (282)
T ss_dssp             SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSC---------C----GGGGSCCCEEEECSSEEEEEE-TTEEEEEECC
T ss_pred             CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCC---------C----ccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCC
Confidence            4556664444444445 89999997544321100         0    012346777777444433335 9999999765


Q ss_pred             CCcEEEEe-eeccCEEEEe-eCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993          266 LLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY  343 (520)
Q Consensus       266 ~~~~~~~~-~~~~~v~~~~-~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iw  343 (520)
                      ..-.+..- .....|..++ -....++.. +|.|+.|-......+-. .......|..++...... ++ -. ||.|+.|
T Consensus        90 ~~Gqlg~P~~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~-~~~~~~~i~~i~~G~~~~-~~-l~-~G~v~~w  164 (282)
T 3qhy_B           90 EDGQTTVPAEARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTV-PAEAQSGVTALDGGVYTA-LA-VK-NGGVIAW  164 (282)
T ss_dssp             TTSTTCCCGGGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSC-CGGGGSSEEEEEECSSEE-EE-EE-TTEEEEE
T ss_pred             CCCCCCCCcccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCC-CccCCCCeEEEEcccCEE-EE-EE-CCEEEEe
Confidence            32211111 1234677777 455566666 99999997654322211 112345677776643322 22 23 7999999


Q ss_pred             EcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcc
Q 009993          344 EIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE  423 (520)
Q Consensus       344 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (520)
                      -.........+.      .-...|..++....+.+.- .||.|..|-.....+...               +...    .
T Consensus       165 G~n~~gqlg~p~------~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~---------------p~~~----~  218 (282)
T 3qhy_B          165 GDNYFGQTTVPA------EAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTV---------------PTEA----L  218 (282)
T ss_dssp             ECCTTSTTSCCG------GGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCC---------------CGGG----G
T ss_pred             cCCCCCCCCCce------ecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCC---------------Cccc----C
Confidence            765542211111      1135688888876655555 699999998765422211               1111    1


Q ss_pred             eeeEEEEecCCEEEEecCCCeEEEEeCCch
Q 009993          424 CNLLSVDIGADRIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       424 ~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~  453 (520)
                      ..+..++......+.-. ||.|+.|-....
T Consensus       219 ~~v~~i~~G~~h~~al~-~g~v~~wG~n~~  247 (282)
T 3qhy_B          219 SGVSAIASGEWYSLALK-NGKVIAWGSSRT  247 (282)
T ss_dssp             SSCCEEEECSSCEEEEE-TTEEEEESTTCC
T ss_pred             CCceEEEcCCCEEEEEE-CCEEEEecCCCC
Confidence            23555555555333333 899999977653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.37  E-value=2.8  Score=42.66  Aligned_cols=172  Identities=14%  Similarity=0.086  Sum_probs=101.0

Q ss_pred             CCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEc--CCEEE-EEecCCeEEEEECCCCcEEEEeeec-c
Q 009993          202 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIY-SGSWDMTVRVWDRALLKCLKVLRHS-D  277 (520)
Q Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~-~  277 (520)
                      ..+.|+..++.+...           .....+ ..-..+..++|+  .+.|+ +-..++.|..+++........+... .
T Consensus        13 ~~~~I~~i~l~~~~~-----------~~~~~~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~   80 (628)
T 4a0p_A           13 RRADIRRISLETNNN-----------NVAIPL-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLD   80 (628)
T ss_dssp             ETTEEEEEESSCTTC-----------EEECCC-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred             eCCcEEEEECCCCCc-----------ceEEEc-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCC
Confidence            456788888765321           011111 123457788884  35555 4456789999998765443333311 2


Q ss_pred             CEEEEe--eCCCEE-EEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC--CCeEEEEEcccCccc
Q 009993          278 WVYGLA--PHDTTV-ASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE--DGAIHMYEIINDCTE  351 (520)
Q Consensus       278 ~v~~~~--~~~~~l-~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~--dg~i~iwd~~~~~~~  351 (520)
                      ....++  +.+..| ++-. .+.|.+.++........+. ........+++.|....|+....  .+.|...++....  
T Consensus        81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~-~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~--  157 (628)
T 4a0p_A           81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW-KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE--  157 (628)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEEC-SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--
T ss_pred             CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEe-CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc--
Confidence            333444  444444 4444 6889999987554322222 34456789999996666665542  5678777776552  


Q ss_pred             cceeeeeeecCCcCCEEEEEecC--CEEEEE-eCCCcEEEEeCCc
Q 009993          352 ANVLLVATWIPHTGPVNSLAFEF--PWLVSA-AGDGKLSLIDVRK  393 (520)
Q Consensus       352 ~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~-s~dg~i~vwd~~~  393 (520)
                           ...+...-...+.|++++  ..|+.+ ...+.|...|+..
T Consensus       158 -----~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG  197 (628)
T 4a0p_A          158 -----RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG  197 (628)
T ss_dssp             -----CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             -----eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC
Confidence                 112222445678999975  555555 4567899999865

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.20  E-value=2.6  Score=41.24  Aligned_cols=149  Identities=11%  Similarity=-0.006  Sum_probs=82.1

Q ss_pred             EEEEec-CCCEEEEEeC-CCcEEEEEcccCcceeeeccCCccccceEEec-cCCCCeEEEEE---------cCCEEEEEe
Q 009993          187 IRAVAA-DKKLLVAGGT-DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLAL---------DLTRIYSGS  254 (520)
Q Consensus       187 v~~~~~-~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~---------~~~~l~s~s  254 (520)
                      -+++.| ++..|+.+.. .+.|++.|..++....+           .... ........++|         +++.|+++.
T Consensus       143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l-----------~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad  211 (496)
T 3kya_A          143 RLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSP-----------LNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAI  211 (496)
T ss_dssp             EEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEE-----------ECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEE
T ss_pred             EEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEE-----------EccCccccCCCcEEEEeecccccCCCCCEEEEEe
Confidence            446666 3444444443 46688888766532111           0000 01235778888         556676666


Q ss_pred             cCC-------eEEEEECCC-Cc--------EEEEeeeccCEEEEeeC-CCEEEEEc-CCeEEEEECC-------CCee--
Q 009993          255 WDM-------TVRVWDRAL-LK--------CLKVLRHSDWVYGLAPH-DTTVASTS-GSDVYIWDTN-------SGCL--  307 (520)
Q Consensus       255 ~dg-------~v~iwd~~~-~~--------~~~~~~~~~~v~~~~~~-~~~l~~~~-d~~i~iwd~~-------~~~~--  307 (520)
                      ..+       .|.+++... +.        .+..+.+...+ .+.++ +.++++.. ++.|..+|+.       ++..  
T Consensus       212 ~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~gi-avdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t  290 (496)
T 3kya_A          212 DYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGA-TIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD  290 (496)
T ss_dssp             CCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCE-EECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred             CCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEE-EEcCCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence            543       366665443 12        22222233333 44564 45555555 7889999987       5543  


Q ss_pred             ---------eEE-eecccccceEEEEecCCCCEEEE-EeCCCeEEEEEccc
Q 009993          308 ---------LTV-VNGAHVGNTKSLARSHTGDFLFT-GGEDGAIHMYEIIN  347 (520)
Q Consensus       308 ---------~~~-~~~~~~~~i~~l~~s~~~~~l~t-g~~dg~i~iwd~~~  347 (520)
                               ... +..+.....+.++|+|+|++|+. -+....|+.++...
T Consensus       291 p~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          291 PIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             CBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             ccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence                     112 22223345689999999996444 45667898877654

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=94.83  E-value=2.1  Score=38.42  Aligned_cols=221  Identities=15%  Similarity=0.040  Sum_probs=120.7

Q ss_pred             cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccC
Q 009993          144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISG  223 (520)
Q Consensus       144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~  223 (520)
                      .|..++....  ..+.-. ||.|..|-....-.+..-......|..++......+.-. ||.|..|-.......-.    
T Consensus        25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~----   96 (282)
T 3qhy_B           25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV----   96 (282)
T ss_dssp             SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC----
T ss_pred             CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC----
Confidence            4666665432  223334 899999976543222111111234566664444333334 89999997544221100    


Q ss_pred             CccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCC-cEEEEeeeccCEEEEeeCCCEEEEEcCCeEEEEEC
Q 009993          224 SEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALL-KCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDT  302 (520)
Q Consensus       224 ~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~iwd~  302 (520)
                         .      ..-...|..++......+.-. ||.|..|-.... ++-........|..++......+.-.+|.|+.|-.
T Consensus        97 ---P------~~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~~G~v~~wG~  166 (282)
T 3qhy_B           97 ---P------AEARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGD  166 (282)
T ss_dssp             ---C------GGGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEETTEEEEEEC
T ss_pred             ---C------cccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEECCEEEEecC
Confidence               0      011347888888666655566 999999976542 22111123456777775444433333899999976


Q ss_pred             CCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeC
Q 009993          303 NSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAG  382 (520)
Q Consensus       303 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~  382 (520)
                      .....+. ++..-...|..++..... .++.  .||.|+.|=.........  +.    .....|..|+....+.+.-. 
T Consensus       167 n~~gqlg-~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~--p~----~~~~~v~~i~~G~~h~~al~-  235 (282)
T 3qhy_B          167 NYFGQTT-VPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTV--PT----EALSGVSAIASGEWYSLALK-  235 (282)
T ss_dssp             CTTSTTS-CCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCC--CG----GGGSSCCEEEECSSCEEEEE-
T ss_pred             CCCCCCC-CceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCC--Cc----ccCCCceEEEcCCCEEEEEE-
Confidence            6432221 111123467777764332 2333  599999997655422111  11    11235777877665555555 


Q ss_pred             CCcEEEEeCCc
Q 009993          383 DGKLSLIDVRK  393 (520)
Q Consensus       383 dg~i~vwd~~~  393 (520)
                      ||.|..|-...
T Consensus       236 ~g~v~~wG~n~  246 (282)
T 3qhy_B          236 NGKVIAWGSSR  246 (282)
T ss_dssp             TTEEEEESTTC
T ss_pred             CCEEEEecCCC
Confidence            99999998765

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A

Probab=94.65  E-value=3.2  Score=39.59  Aligned_cols=300  Identities=15%  Similarity=0.072  Sum_probs=158.0

Q ss_pred             ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc-----------EEEEeC-CCCceEEEEecCCCEEEEEeCC-CcEEEE
Q 009993          143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF-----------SIASSK-PLGCTIRAVAADKKLLVAGGTD-GFIHCW  209 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~-----------~~~~~~-~~~~~v~~~~~~~~~l~sg~~d-g~i~vw  209 (520)
                      ..|..++.-  +...+.-..||.|..|-....-           ....+. .....|..++......+.-..| +.|..|
T Consensus        16 ~~v~~ia~G--~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~w   93 (406)
T 4d9s_A           16 RKVLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSW   93 (406)
T ss_dssp             CCEEEEEEC--SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEE
T ss_pred             cceEEEecC--CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEE
Confidence            456666553  4455556678999999653311           011111 1123577777555555555555 489999


Q ss_pred             EcccCcceeeeccCCccccceEEecc-CCCCeEEEEEcCCEEEEEecCCeEEEEECCCC-c--------E--EEEee--e
Q 009993          210 RAVEVLPHLFDISGSEKQNTQFRLWE-HEGPITSLALDLTRIYSGSWDMTVRVWDRALL-K--------C--LKVLR--H  275 (520)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~-~--------~--~~~~~--~  275 (520)
                      -.......-..  ..........+.. ....|..++......+.-..||.|..|-.... +        .  ...+.  .
T Consensus        94 G~n~~GqLG~g--~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~  171 (406)
T 4d9s_A           94 GWGDFGRLGHG--NSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE  171 (406)
T ss_dssp             ECCGGGTTCSS--SCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGT
T ss_pred             cCCCCcCCCCC--CCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccC
Confidence            65332110000  0000001111111 23368888887777777788999999965421 1        1  11111  2


Q ss_pred             ccCEEEEeeCCCEE-EEEcCCeEEEEECCCCe-----------eeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993          276 SDWVYGLAPHDTTV-ASTSGSDVYIWDTNSGC-----------LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY  343 (520)
Q Consensus       276 ~~~v~~~~~~~~~l-~~~~d~~i~iwd~~~~~-----------~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iw  343 (520)
                      ...|..++...... +...+|.|+.|-.....           ....+.......|..++..  ....+.-..||.|+.|
T Consensus       172 ~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~ht~~l~~~G~v~~w  249 (406)
T 4d9s_A          172 GIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG--WRHTISVSYSGALYTY  249 (406)
T ss_dssp             TCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC--SSEEEEEETTCCEEEE
T ss_pred             CCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC--CCcEEEEcCCCCEEEe
Confidence            23677887555444 44459999999654211           1111111112345555543  3344555688999998


Q ss_pred             EcccCccc------cceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcc
Q 009993          344 EIINDCTE------ANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQR  417 (520)
Q Consensus       344 d~~~~~~~------~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (520)
                      -.......      ....+...-......|..|+....+.+.-..||.|+.|-.....+...........       +..
T Consensus       250 G~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~-------p~~  322 (406)
T 4d9s_A          250 GWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS-------PVQ  322 (406)
T ss_dssp             ECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEE-------EEE
T ss_pred             eCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCcc-------CEE
Confidence            75432111      00011111111234588888877788888899999999876543332211111110       011


Q ss_pred             cccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHh
Q 009993          418 MLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE  455 (520)
Q Consensus       418 ~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~  455 (520)
                      +.......|..++......+.-..||.|+.|-....-+
T Consensus       323 v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~Gq  360 (406)
T 4d9s_A          323 VRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQ  360 (406)
T ss_dssp             ECCGGGCCEEEEEECSSEEEEEETTSCEEEEECCTTST
T ss_pred             EeccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCc
Confidence            11112235777777777667777899999998765433

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.18  E-value=4  Score=38.85  Aligned_cols=260  Identities=9%  Similarity=0.012  Sum_probs=148.8

Q ss_pred             CCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeE
Q 009993          162 YDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPIT  241 (520)
Q Consensus       162 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  241 (520)
                      .+..|.|-|+.++..+...+- ...-.-+.|..+.++.-. ..++.++|+++..             ..... .....|.
T Consensus        46 ~~~~vvIiDl~~~~~~~rrpi-~AdsAIMnP~~~iiALra-g~~lQiFnle~K~-------------klks~-~~~e~Vv  109 (494)
T 1bpo_A           46 EQAQVVIIDMNDPSNPIRRPI-SADSAIMNPASKVIALKA-GKTLQIFNIEMKS-------------KMKAH-TMTDDVT  109 (494)
T ss_dssp             TCCEEEEEETTSTTSCEEEEC-CCSEEEECSSSSCEEEEE-TTEEEEEETTTTE-------------EEEEE-ECSSCCC
T ss_pred             CCCeEEEEECCCCCcceeccc-ccceeeeCCCCcEEEEec-CCeEEEEchHHhh-------------hhcce-ecCCCce
Confidence            344799999988655432221 112223457777776655 6789999997642             11111 2245677


Q ss_pred             EEEE-cCCEEEEEecCCeEEEEECCC-CcEEEEee-e----ccCEEEEe--eCCCEEEEEc----C----CeEEEEECCC
Q 009993          242 SLAL-DLTRIYSGSWDMTVRVWDRAL-LKCLKVLR-H----SDWVYGLA--PHDTTVASTS----G----SDVYIWDTNS  304 (520)
Q Consensus       242 ~l~~-~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~-~----~~~v~~~~--~~~~~l~~~~----d----~~i~iwd~~~  304 (520)
                      --.| +.+.|+-.+. ..|+-|++.. ..+.+.+. |    ...|....  ++.++++..+    +    |.+.+|..+.
T Consensus       110 fWkWis~~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er  188 (494)
T 1bpo_A          110 FWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR  188 (494)
T ss_dssp             EEEEEETTEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred             EEEecCCCeEEEEcC-CeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc
Confidence            7777 7888776664 6899999974 34555554 2    33444443  6777766433    2    6788999877


Q ss_pred             CeeeEEeecccccceEEEEecCCC---CEEEEEeC---CCeEEEEEcccCc---cccceeeeeeecC---CcCCEEEEEe
Q 009993          305 GCLLTVVNGAHVGNTKSLARSHTG---DFLFTGGE---DGAIHMYEIINDC---TEANVLLVATWIP---HTGPVNSLAF  372 (520)
Q Consensus       305 ~~~~~~~~~~~~~~i~~l~~s~~~---~~l~tg~~---dg~i~iwd~~~~~---~~~~~~~~~~~~~---h~~~v~~l~~  372 (520)
                      +... .+ .||......+.+.-+.   ..++.+..   .++++|.++....   .....+.+..+..   -.+-..++..
T Consensus       189 ~~sQ-~i-eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv  266 (494)
T 1bpo_A          189 KVSQ-PI-EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI  266 (494)
T ss_dssp             CCEE-EE-CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE
T ss_pred             cccc-hh-eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe
Confidence            6433 23 3676655555443211   23333333   2789999986541   1111111111111   2344566777


Q ss_pred             cC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEe--cCCEEEEecCCCeEEEE
Q 009993          373 EF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GADRIVCGGEEGIVRIW  448 (520)
Q Consensus       373 ~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~Dg~v~iw  448 (520)
                      ++  ..++.-+.-|.|.+||+.++...+.                   -+-...+++.-++  ...-++.....|.|.--
T Consensus       267 s~kygviyviTK~G~i~lyDleTgt~i~~-------------------nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v  327 (494)
T 1bpo_A          267 SEKHDVVFLITKYGYIHLYDLETGTCIYM-------------------NRISGETIFVTAPHEATAGIIGVNRKGQVLSV  327 (494)
T ss_dssp             ETTTTEEEEEETTSEEEEEETTTCCEEEE-------------------EECCSSCEEEEEEETTTTEEEEEETTCEEEEE
T ss_pred             cccCCEEEEEecCceEEEEecccceeeee-------------------ecccCCceEEecccCCCCcEEEEccCceEEEE
Confidence            66  5888889999999999998643321                   1111122333333  23355555677888777


Q ss_pred             eCCchHhHHHH
Q 009993          449 NFSQAFEIERR  459 (520)
Q Consensus       449 d~~~~~~~~~~  459 (520)
                      .+.+...+.-.
T Consensus       328 ~v~e~~ivpyi  338 (494)
T 1bpo_A          328 CVEEENIIPYI  338 (494)
T ss_dssp             EECTTTHHHHH
T ss_pred             EEccccchhhh
Confidence            77766655443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=94.09  E-value=0.018  Score=58.69  Aligned_cols=35  Identities=17%  Similarity=0.293  Sum_probs=32.3

Q ss_pred             ccCCCHHHHHHHccCC-ChhhhHHHhhhhhhHHHhh
Q 009993           64 ITDLPPALISEILNCL-DPKELGIVSCVSPILHRLA   98 (520)
Q Consensus        64 ~~~LP~el~~~i~~~L-~~~~l~~~s~v~~~~~~~~   98 (520)
                      ...||+|++.+||+|| +++++.+++.|||+|+.+.
T Consensus        13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence            4579999999999999 8999999999999999983

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.08  E-value=7.3  Score=43.13  Aligned_cols=218  Identities=10%  Similarity=0.048  Sum_probs=118.7

Q ss_pred             CCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeE
Q 009993          162 YDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPIT  241 (520)
Q Consensus       162 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  241 (520)
                      ....|.|-|+.++..+...+ -...-.-+.|..+.++.-+ ..++.|+|+++..             .... .....+|.
T Consensus        46 ~~~~vvIidl~~~~~~~rrp-i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~-------------klks-~~~~e~Vv  109 (1630)
T 1xi4_A           46 EQAQVVIIDMNDPSNPIRRP-ISADSAIMNPASKVIALKA-GKTLQIFNIEMKS-------------KMKA-HTMTDDVT  109 (1630)
T ss_pred             CCceEEEEECCCCCCccccc-ccchhhccCCCcceEEEec-CCeEEEeehHHhh-------------hhcc-cccCCCce
Confidence            34478899998866542221 1111112346666666554 6789999987642             1111 12245676


Q ss_pred             EEEE-cCCEEEEEecCCeEEEEECCCC-cEEEEee-e----ccCEEEEe--eCCCEEEEEc--------CCeEEEEECCC
Q 009993          242 SLAL-DLTRIYSGSWDMTVRVWDRALL-KCLKVLR-H----SDWVYGLA--PHDTTVASTS--------GSDVYIWDTNS  304 (520)
Q Consensus       242 ~l~~-~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~-~----~~~v~~~~--~~~~~l~~~~--------d~~i~iwd~~~  304 (520)
                      --.| +.+.|+-.+. ..|.-|++... .+.+.+. |    ...|....  ++.++++..+        .|.+.+|..+.
T Consensus       110 fWkWis~~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er  188 (1630)
T 1xi4_A          110 FWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR  188 (1630)
T ss_pred             EEEecCCCeeEEEcC-CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc
Confidence            6677 7777666654 57999999642 3333333 2    33444433  6677766433        27788888876


Q ss_pred             CeeeEEeecccccceEEEEec--CCCCEEEE-EeC---CCeEEEEEcccCc---cccceeeeeeecCC---cCCEEEEEe
Q 009993          305 GCLLTVVNGAHVGNTKSLARS--HTGDFLFT-GGE---DGAIHMYEIINDC---TEANVLLVATWIPH---TGPVNSLAF  372 (520)
Q Consensus       305 ~~~~~~~~~~~~~~i~~l~~s--~~~~~l~t-g~~---dg~i~iwd~~~~~---~~~~~~~~~~~~~h---~~~v~~l~~  372 (520)
                      +... .+ .||.+....+...  +....|++ +..   .++++|-++....   .....+.+..+.+.   .+-..++..
T Consensus       189 ~~sQ-~i-egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~v  266 (1630)
T 1xi4_A          189 KVSQ-PI-EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI  266 (1630)
T ss_pred             ccch-hh-hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEe
Confidence            5332 12 2565544333332  11122222 221   3789999986541   11111111111111   223345555


Q ss_pred             cC--CEEEEEeCCCcEEEEeCCcccccC
Q 009993          373 EF--PWLVSAAGDGKLSLIDVRKLLRSG  398 (520)
Q Consensus       373 ~~--~~l~s~s~dg~i~vwd~~~~~~~~  398 (520)
                      ++  ..+...+.-|.|.++|+.++...+
T Consensus       267 s~k~g~iy~itk~G~~~~~d~~t~~~i~  294 (1630)
T 1xi4_A          267 SEKHDVVFLITKYGYIHLYDLETGTCIY  294 (1630)
T ss_pred             ccccCEEEEEecCceEEEEecccchhhh
Confidence            55  578888899999999999975544

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B

Probab=93.54  E-value=5.3  Score=38.09  Aligned_cols=259  Identities=14%  Similarity=0.032  Sum_probs=141.4

Q ss_pred             ceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEEC
Q 009993          185 CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDR  264 (520)
Q Consensus       185 ~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~  264 (520)
                      ..|..++......+.-..||.|..|-.......-..............+ .-...|..++......+.-..||.|..|-.
T Consensus        59 ~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v-~l~~~i~~va~G~~hs~alt~~G~v~~wG~  137 (413)
T 1a12_A           59 EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKV-ELQEKVVQVSAGDSHTAALTDDGRVFLWGS  137 (413)
T ss_dssp             SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEEC-CCCSCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred             CCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEe-cCCCcEEEEecCCCeEEEEcCCCcEEEeeC
Confidence            5677777666777777889999999764321100000000000011111 123478888887777777788999999974


Q ss_pred             --CC-CcE-----------EEEeeeccCEEEEeeCCCE-EEEEcCCeEEEEECCCCeee---------------------
Q 009993          265 --AL-LKC-----------LKVLRHSDWVYGLAPHDTT-VASTSGSDVYIWDTNSGCLL---------------------  308 (520)
Q Consensus       265 --~~-~~~-----------~~~~~~~~~v~~~~~~~~~-l~~~~d~~i~iwd~~~~~~~---------------------  308 (520)
                        .. +++           ...+.....|..++..... ++...+|.|+.|-....-.+                     
T Consensus       138 ~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~  217 (413)
T 1a12_A          138 FRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLV  217 (413)
T ss_dssp             EEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHS
T ss_pred             CcCCCCccCcCCccccccCCEEecCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccccccccc
Confidence              21 111           1111234567777755444 44455899999976532110                     


Q ss_pred             -EEeecc-----cccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccc--------cceeeeeeecCCcCCEEEEEecC
Q 009993          309 -TVVNGA-----HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE--------ANVLLVATWIPHTGPVNSLAFEF  374 (520)
Q Consensus       309 -~~~~~~-----~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~h~~~v~~l~~~~  374 (520)
                       ..+...     ....|..++...  .+.+.-..||.|+.|-.......        ..+..+..+......|..|+...
T Consensus       218 P~~v~~~~~g~~~~~~i~~ia~G~--~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~  295 (413)
T 1a12_A          218 PKCVMLKSRGSRGHVRFQDAFCGA--YFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQ  295 (413)
T ss_dssp             CEECCCBCSSCCSBCCEEEEEEET--TEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECS
T ss_pred             CceEeeccccccCCccEEEEEeCC--CEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEeccc
Confidence             001100     123455555543  33444457899999976532111        11112222222224588888877


Q ss_pred             CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchH
Q 009993          375 PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAF  454 (520)
Q Consensus       375 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~  454 (520)
                      .+.+.-..||.|+.|-.....+...............+       ... ..|..++......+.-..||.|+.|-.....
T Consensus       296 ~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v-------~~l-~~v~~v~~G~~hs~alt~~G~v~~wG~n~~g  367 (413)
T 1a12_A          296 HHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLI-------SRL-PAVSSVACGASVGYAVTKDGRVFAWGMGTNY  367 (413)
T ss_dssp             SEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEEC-------CSS-SSEEEEEECSSEEEEEETTSCEEEEECCTTS
T ss_pred             ceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEe-------ccc-CceeEEEECcceEEEEeCCCCEEEecCCCCC
Confidence            78788889999999987764333221111111000011       111 1577777777766667789999999876543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=93.07  E-value=7.1  Score=38.14  Aligned_cols=193  Identities=8%  Similarity=-0.045  Sum_probs=101.5

Q ss_pred             cEEEEEEccC-C-CEEEEEeCCCeEEEEECCCCcEEEEeCCC-----CceEEEE-------ecCCCEEEEEeCCC-c---
Q 009993          144 AVLTVFVLAS-A-KLLFTSGYDSIVRMWHLEDGFSIASSKPL-----GCTIRAV-------AADKKLLVAGGTDG-F---  205 (520)
Q Consensus       144 ~V~~l~~~~~-~-~~l~sgs~dg~v~vwd~~~~~~~~~~~~~-----~~~v~~~-------~~~~~~l~sg~~dg-~---  205 (520)
                      ....|+|+|. + +++++-...+.|++.|+.++.........     ...-.++       .+++..|+++...+ .   
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4578999983 4 44444444567899998877655433321     1344567       77888666666554 2   


Q ss_pred             ---EEEEEccc-CcceeeeccCCccccceEEeccCCCCeEEEEEc---CCEEEEEecCCeEEEEECC-------CCcE--
Q 009993          206 ---IHCWRAVE-VLPHLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGSWDMTVRVWDRA-------LLKC--  269 (520)
Q Consensus       206 ---i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~v~iwd~~-------~~~~--  269 (520)
                         |.+.+... +..     ...........+ .   ....++++   +.++++-..++.|..+|+.       ++..  
T Consensus       220 ~~~V~~i~r~~~G~~-----~~~~~~~~v~~~-~---~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t  290 (496)
T 3kya_A          220 SPSVYIIKRNADGTF-----DDRSDIQLIAAY-K---QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD  290 (496)
T ss_dssp             EEEEEEEECCTTSCC-----STTSCEEEEEEE-S---CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred             CceEEEEecCCCCce-----eecccceeeccC-C---CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence               55554322 110     000000011111 2   22345563   3455566677889999987       4543  


Q ss_pred             ---------EEE-ee--eccCEE--EEeeCCCEEEEEc--CCeEEEEEC--CCCee--eEEeec--cc------------
Q 009993          270 ---------LKV-LR--HSDWVY--GLAPHDTTVASTS--GSDVYIWDT--NSGCL--LTVVNG--AH------------  315 (520)
Q Consensus       270 ---------~~~-~~--~~~~v~--~~~~~~~~l~~~~--d~~i~iwd~--~~~~~--~~~~~~--~~------------  315 (520)
                               ... +.  ...+-.  ++.++++.|+.+.  .+.|+.+|.  ..+..  ...+..  +.            
T Consensus       291 p~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~  370 (496)
T 3kya_A          291 PIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEAR  370 (496)
T ss_dssp             CBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCB
T ss_pred             ccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccc
Confidence                     112 22  223333  4458888655554  688888654  33332  112211  00            


Q ss_pred             ccceE-EEEec-------CCCCEEEEEeCCCeEEEEEc
Q 009993          316 VGNTK-SLARS-------HTGDFLFTGGEDGAIHMYEI  345 (520)
Q Consensus       316 ~~~i~-~l~~s-------~~~~~l~tg~~dg~i~iwd~  345 (520)
                      -.... .++..       +++.++++=..++.|+.++.
T Consensus       371 f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~  408 (496)
T 3kya_A          371 MNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP  408 (496)
T ss_dssp             CSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred             cCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC
Confidence            11234 44444       45666666667788999883

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.06  E-value=8  Score=39.86  Aligned_cols=198  Identities=10%  Similarity=0.025  Sum_probs=101.3

Q ss_pred             cCCCEEEEEeCC----CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecC------CeE
Q 009993          192 ADKKLLVAGGTD----GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD------MTV  259 (520)
Q Consensus       192 ~~~~~l~sg~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d------g~v  259 (520)
                      .++..++.|+.+    ..+.+||..++.-.........     .........-....+  ++..++.|+.+      ..+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~-----~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv  470 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSS-----SEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDN  470 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCC-----SCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCC
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCC-----CCCCccccceEEEEEccCCEEEEEcCCCCCCCccccE
Confidence            667777888754    4577888766532221100000     001111122334455  56667777654      357


Q ss_pred             EEEECCCCcEEEEee--ec-cCEEEEe-eCCCEEEEEc-CC--eEEEEECCCCeeeEEeec----ccccceEEEEecCC-
Q 009993          260 RVWDRALLKCLKVLR--HS-DWVYGLA-PHDTTVASTS-GS--DVYIWDTNSGCLLTVVNG----AHVGNTKSLARSHT-  327 (520)
Q Consensus       260 ~iwd~~~~~~~~~~~--~~-~~v~~~~-~~~~~l~~~~-d~--~i~iwd~~~~~~~~~~~~----~~~~~i~~l~~s~~-  327 (520)
                      .+||..+.+-...-.  .. ..-.++. .++.+++.|+ ++  .+.+||+.+..-...-..    .......++.+..+ 
T Consensus       471 ~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~  550 (695)
T 2zwa_A          471 WIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS  550 (695)
T ss_dssp             EEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred             EEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence            889988754332221  11 1112233 3777777776 43  799999988753222110    01111223455554 


Q ss_pred             CCEEEEEeC--C-----CeEEEEEcccCcc--ccceeeeeee-cCCcCCEEEEEec-CCEEEEEeC--------CCcEEE
Q 009993          328 GDFLFTGGE--D-----GAIHMYEIINDCT--EANVLLVATW-IPHTGPVNSLAFE-FPWLVSAAG--------DGKLSL  388 (520)
Q Consensus       328 ~~~l~tg~~--d-----g~i~iwd~~~~~~--~~~~~~~~~~-~~h~~~v~~l~~~-~~~l~s~s~--------dg~i~v  388 (520)
                      +.+++.|+.  +     ..+.+||+.+..-  ......+... ........++.++ +..++.|+.        ...|.+
T Consensus       551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~  630 (695)
T 2zwa_A          551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIIS  630 (695)
T ss_dssp             TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEE
T ss_pred             CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEE
Confidence            667777765  2     4588999887741  0001112111 0111223445566 667777764        346889


Q ss_pred             EeCCcc
Q 009993          389 IDVRKL  394 (520)
Q Consensus       389 wd~~~~  394 (520)
                      ||+.+.
T Consensus       631 yd~~t~  636 (695)
T 2zwa_A          631 LDPLSE  636 (695)
T ss_dssp             EETTTT
T ss_pred             EECCCC
Confidence            998864

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A

Probab=92.30  E-value=7.9  Score=36.80  Aligned_cols=259  Identities=14%  Similarity=0.094  Sum_probs=138.0

Q ss_pred             CceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEecc-CCCCeEEEEEcCCEEEEEecC-CeEEE
Q 009993          184 GCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE-HEGPITSLALDLTRIYSGSWD-MTVRV  261 (520)
Q Consensus       184 ~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~l~s~s~d-g~v~i  261 (520)
                      ...|..++.-....+.-..||.|..|-.......-..  ..........+.. ....|..++......+.-..| +.|..
T Consensus        15 ~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g--~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~   92 (406)
T 4d9s_A           15 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHG--DAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYS   92 (406)
T ss_dssp             CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSS--SCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEE
T ss_pred             ccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCC--CcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEE
Confidence            4467777766777777778899988865432110000  0000011111111 234688888866665555555 49999


Q ss_pred             EECCCC---------cEEE--Eee--eccCEEEEeeCCCE-EEEEcCCeEEEEECCCC-e----------eeEEeecccc
Q 009993          262 WDRALL---------KCLK--VLR--HSDWVYGLAPHDTT-VASTSGSDVYIWDTNSG-C----------LLTVVNGAHV  316 (520)
Q Consensus       262 wd~~~~---------~~~~--~~~--~~~~v~~~~~~~~~-l~~~~d~~i~iwd~~~~-~----------~~~~~~~~~~  316 (520)
                      |-....         ....  .+.  ....|..++..... ++...+|.|+.|-.... +          ....+..-..
T Consensus        93 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~  172 (406)
T 4d9s_A           93 WGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEG  172 (406)
T ss_dssp             EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTT
T ss_pred             EcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCC
Confidence            954321         1111  111  23368888855444 44555999999975432 1          1111211112


Q ss_pred             cceEEEEecCCCCEEEEEeCCCeEEEEEcccCccc------cceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEe
Q 009993          317 GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE------ANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLID  390 (520)
Q Consensus       317 ~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~------~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd  390 (520)
                      ..|..++..  ..+.+.-..||.|+.|-.......      ....+..........|..++....+.+.-..||.|+.|-
T Consensus       173 ~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG  250 (406)
T 4d9s_A          173 IRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYG  250 (406)
T ss_dssp             CCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEE
T ss_pred             CcEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEee
Confidence            256666553  345555668999999965432110      111111111112346888888788888889999999998


Q ss_pred             CCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCch
Q 009993          391 VRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~  453 (520)
                      .....+...........+     .....+  ....|..++......+.-..||.|+.|-....
T Consensus       251 ~n~~GqlG~g~~~~~~~p-----~~v~~~--~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~  306 (406)
T 4d9s_A          251 WSKYGQLGHGDLEDHLIP-----HKLEAL--SNSFISQISGGWRHTMALTSDGKLYGWGWNKF  306 (406)
T ss_dssp             CCTTSTTCSSSCCCEEEE-----EECGGG--TTSCEEEEEECSSEEEEEETTSCEEEEECCTT
T ss_pred             CCCCCCCCCCCCcCcccc-----EEeccc--CCCCEEEEEecCCEEEEEcCCCeEEEeeCCCC
Confidence            765433322211111100     001111  12346667766666666678999999986543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=92.07  E-value=4.9  Score=41.46  Aligned_cols=186  Identities=10%  Similarity=0.051  Sum_probs=94.8

Q ss_pred             cCCCEEEEEeCC----CeEEEEECCCCcEEEEe--------CCC-CceEEEEec-CCCEEEEEeCCC------cEEEEEc
Q 009993          152 ASAKLLFTSGYD----SIVRMWHLEDGFSIASS--------KPL-GCTIRAVAA-DKKLLVAGGTDG------FIHCWRA  211 (520)
Q Consensus       152 ~~~~~l~sgs~d----g~v~vwd~~~~~~~~~~--------~~~-~~~v~~~~~-~~~~l~sg~~dg------~i~vwd~  211 (520)
                      .++.+++.|+.+    ..+.+||..+++-...-        ... .....+... ++..++.|+.++      .+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456777777753    45888898776533222        111 111112222 777888887543      4677777


Q ss_pred             ccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCC--eEEEEECCCCcEEEEee--------eccCEE
Q 009993          212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDM--TVRVWDRALLKCLKVLR--------HSDWVY  280 (520)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~--------~~~~v~  280 (520)
                      .+..-..           ...+......-.+..+ ++..++.|+.++  .+.+||..+..-...-.        ......
T Consensus       476 ~t~~W~~-----------~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~  544 (695)
T 2zwa_A          476 KTREWSM-----------IKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGL  544 (695)
T ss_dssp             TTTEEEE-----------CCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEE
T ss_pred             CCCcEEE-----------CCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEE
Confidence            6643111           1111111222233444 777888887655  68999998765333221        111112


Q ss_pred             EEeeC-CCEEEEEc-C-------CeEEEEECCCCee-----eEEeec-c-cccceEEEEecCCCCEEEEEeCC-------
Q 009993          281 GLAPH-DTTVASTS-G-------SDVYIWDTNSGCL-----LTVVNG-A-HVGNTKSLARSHTGDFLFTGGED-------  337 (520)
Q Consensus       281 ~~~~~-~~~l~~~~-d-------~~i~iwd~~~~~~-----~~~~~~-~-~~~~i~~l~~s~~~~~l~tg~~d-------  337 (520)
                      .+... +.+++.|+ +       +.+.+||+.+..-     ...+.. . ....-.+++...++.+++.|+.+       
T Consensus       545 v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~  624 (695)
T 2zwa_A          545 EFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDR  624 (695)
T ss_dssp             EEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCT
T ss_pred             EEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCC
Confidence            22333 55666665 2       3589999988761     122211 0 11111122222236667777642       


Q ss_pred             -CeEEEEEcccC
Q 009993          338 -GAIHMYEIIND  348 (520)
Q Consensus       338 -g~i~iwd~~~~  348 (520)
                       ..+.+||+.+.
T Consensus       625 ~~~v~~yd~~t~  636 (695)
T 2zwa_A          625 TNSIISLDPLSE  636 (695)
T ss_dssp             TTSEEEEETTTT
T ss_pred             CCeEEEEECCCC
Confidence             34777777665

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}

Probab=91.03  E-value=11  Score=35.95  Aligned_cols=257  Identities=12%  Similarity=-0.007  Sum_probs=140.3

Q ss_pred             eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEEC-
Q 009993          186 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDR-  264 (520)
Q Consensus       186 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~-  264 (520)
                      .|..++..+...+.-..||.|..|-.......-..............+ .....|..++......+.-..||.|..|-. 
T Consensus        76 ~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v-~~~~~i~~va~G~~hs~al~~~G~v~~wG~~  154 (423)
T 3mvd_K           76 DAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLI-DLPGKALCISAGDSHSACLLEDGRVFAWGSF  154 (423)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEEC-CCSSCEEEEEECSSEEEEEETTSCEEEEECE
T ss_pred             CceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEE-cCCCCEEEEEcCcCeEEEEeCCCeEEEEeCC
Confidence            467777777788888899999999754422110000000000111111 123568888887777777788999999975 


Q ss_pred             -CC-CcE---------EE-EeeeccCEEEEeeCCCE-EEEEcCCeEEEEECCCCee----------------------eE
Q 009993          265 -AL-LKC---------LK-VLRHSDWVYGLAPHDTT-VASTSGSDVYIWDTNSGCL----------------------LT  309 (520)
Q Consensus       265 -~~-~~~---------~~-~~~~~~~v~~~~~~~~~-l~~~~d~~i~iwd~~~~~~----------------------~~  309 (520)
                       .. +++         .. .+.....|..++..... ++...+|.|+.|-....-.                      ..
T Consensus       155 ~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~  234 (423)
T 3mvd_K          155 RDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPT  234 (423)
T ss_dssp             ECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCE
T ss_pred             CCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCe
Confidence             22 221         00 11134467778754444 4555599999996432110                      11


Q ss_pred             EeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccc--------cceeeeeeecCCcCCEEEEEecCCEEEEEe
Q 009993          310 VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE--------ANVLLVATWIPHTGPVNSLAFEFPWLVSAA  381 (520)
Q Consensus       310 ~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s  381 (520)
                      .+.......|..++... ...++.-..||.|+.|-.......        ....++..   ....|..|+....+.+.-.
T Consensus       235 ~v~~~~~~~v~~i~~g~-~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~---~~~~v~~ia~G~~ht~alt  310 (423)
T 3mvd_K          235 QLIITRAKPFEAIWATN-YCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKT---ELKDIRHIAGGQHHTVILT  310 (423)
T ss_dssp             EECCTTCCCEEEEEEET-TEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEE---CCCSEEEEEECSSEEEEEE
T ss_pred             EEeecCCccEEEEEECC-cEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEc---CCCCeEEEEcccCeEEEEe
Confidence            11111223455554432 122333357888988875442111        00111111   1346888888778888888


Q ss_pred             CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchH
Q 009993          382 GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAF  454 (520)
Q Consensus       382 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~  454 (520)
                      .||.|+.|-.....+...............+       ......|..++......+.-..||.|+.|-....-
T Consensus       311 ~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v-------~~l~~~v~~ia~G~~hs~alt~~G~v~~wG~n~~G  376 (423)
T 3mvd_K          311 TDLKCSVVGRPEYGRLGLGDVKDVVEKPTIV-------KKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNN  376 (423)
T ss_dssp             TTCCEEEEECCGGGTTCSSSCCSCEEEEEEC-------TTCCSCEEEEEEETTEEEEEETTSCEEEEECCTTS
T ss_pred             CCCcEEEEECCCCCCCCCCCccccccCceEe-------ccCCCCEEEEEcCCCeEEEEcCCCCEEEECCCCCC
Confidence            9999999987765433322221111111111       11112577777777766666889999999876543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=89.00  E-value=14  Score=34.17  Aligned_cols=67  Identities=15%  Similarity=0.119  Sum_probs=38.8

Q ss_pred             cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcE--EEEeC-----CCCceEEEEecC---CCEEEEEeC-C-----CcEE
Q 009993          144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS--IASSK-----PLGCTIRAVAAD---KKLLVAGGT-D-----GFIH  207 (520)
Q Consensus       144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~--~~~~~-----~~~~~v~~~~~~---~~~l~sg~~-d-----g~i~  207 (520)
                      .-..++|.|+|+++++ ..+|.|.+++  ++..  +..+.     .....-.+++++   +..|+.+.. .     +.|.
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            4579999999985554 5679999998  4432  22221     112222345566   445554433 2     5677


Q ss_pred             EEEccc
Q 009993          208 CWRAVE  213 (520)
Q Consensus       208 vwd~~~  213 (520)
                      .++...
T Consensus       109 r~~~~~  114 (352)
T 2ism_A          109 RLRHLG  114 (352)
T ss_dssp             EEEECS
T ss_pred             EEEeCC
Confidence            777653

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=88.27  E-value=2.6  Score=36.04  Aligned_cols=72  Identities=15%  Similarity=0.038  Sum_probs=40.5

Q ss_pred             cceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccc---ceeeeeeecCCcCCEEEEEecCC-EEEEEeCCCcEEEEeCC
Q 009993          317 GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA---NVLLVATWIPHTGPVNSLAFEFP-WLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       317 ~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~---~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~  392 (520)
                      ..+..++|+|+|.+.++  .+|.++-.+..+.....   ....+-.. +-.. -.++.|+++ .|..+ .||.|+-++..
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~-Gw~~-F~a~~fD~~G~LYav-~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNG-GWNQ-FQFLFFDPNGYLYAV-SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECS-CGGG-CSEEEECTTSCEEEE-ETTEEEEESCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccc-cccc-ceEEEECCCCCEEEe-CCCEEEEeCCC
Confidence            46779999999987666  67776665554321100   00111000 1111 367888874 44444 67999888754


Q ss_pred             c
Q 009993          393 K  393 (520)
Q Consensus       393 ~  393 (520)
                      +
T Consensus       116 ~  116 (236)
T 1tl2_A          116 Q  116 (236)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=81.82  E-value=24  Score=30.19  Aligned_cols=177  Identities=11%  Similarity=-0.069  Sum_probs=83.7

Q ss_pred             CCEEEEEeCCCeEEEEECCCCc------EEEEeCC---CCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCC
Q 009993          154 AKLLFTSGYDSIVRMWHLEDGF------SIASSKP---LGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGS  224 (520)
Q Consensus       154 ~~~l~sgs~dg~v~vwd~~~~~------~~~~~~~---~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~  224 (520)
                      ...|++...| +|++=...++.      ....+-.   +...-.++.|++.+.++  .+|.+.-.+..+.....+-    
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~----   76 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWM----   76 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHH----
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccc----
Confidence            4456666666 55554444332      1111111   33445677798886665  6676554443332111000    


Q ss_pred             ccccceEEec--cCCCCeEEEEEcCC-EEEEEecCCeEEEEECCCCcEEE------Eee--eccCEEEEe--eCCCEEEE
Q 009993          225 EKQNTQFRLW--EHEGPITSLALDLT-RIYSGSWDMTVRVWDRALLKCLK------VLR--HSDWVYGLA--PHDTTVAS  291 (520)
Q Consensus       225 ~~~~~~~~~~--~h~~~v~~l~~~~~-~l~s~s~dg~v~iwd~~~~~~~~------~~~--~~~~v~~~~--~~~~~l~~  291 (520)
                         .....+-  +-.. -.++.||++ .|+.. .||.|.-++-.+...-.      .+.  .=..+..+.  |+|.+.++
T Consensus        77 ---~s~t~IG~~Gw~~-F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav  151 (236)
T 1tl2_A           77 ---GRAKKIGNGGWNQ-FQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAV  151 (236)
T ss_dssp             ---HHCEEEECSCGGG-CSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEE
T ss_pred             ---ccccEeccccccc-ceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEE
Confidence               0011110  1111 356677543 23333 67999888764321111      111  012334444  88888888


Q ss_pred             EcCCeEEEEECCCCe------eeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEccc
Q 009993          292 TSGSDVYIWDTNSGC------LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIN  347 (520)
Q Consensus       292 ~~d~~i~iwd~~~~~------~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~  347 (520)
                      . |+.++-....++.      ....+-...-....-+.|.+++.+.++.  +|  ++|....
T Consensus       152 ~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~  208 (236)
T 1tl2_A          152 H-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYP  208 (236)
T ss_dssp             E-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEESC
T ss_pred             e-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecCC
Confidence            8 8876544333221      1111111222234456788988877666  77  4444433

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=80.91  E-value=31  Score=31.02  Aligned_cols=210  Identities=9%  Similarity=-0.049  Sum_probs=112.2

Q ss_pred             EEEccCCCEEEEEeCC--------------CeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEe--CCCcEEEEEc
Q 009993          148 VFVLASAKLLFTSGYD--------------SIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGG--TDGFIHCWRA  211 (520)
Q Consensus       148 l~~~~~~~~l~sgs~d--------------g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~--~dg~i~vwd~  211 (520)
                      --++++|.+|+-....              ..|+..++..++.......   ....++++++.|+-..  .++.-.|+.+
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~---~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~  134 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD---PCIYASLIGNYIYYLHYDTQTATSLYRI  134 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS---CEEEEEEETTEEEEEEESSSSCEEEEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC---CccEEEEeCCEEEEEeecCCCCceEEEE
Confidence            3457888888866542              4677778776653332222   2236677888888765  3444444443


Q ss_pred             ccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEec-CCeEEEEECCCCcEEEEeeeccCEEEEeeCCCEEE
Q 009993          212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSW-DMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVA  290 (520)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~  290 (520)
                      ....        .    ....+..+..  ..+.++++.|+-.+. ...|..-++..+.....+..... ..+.|++..|+
T Consensus       135 ~~dG--------s----~~~~lt~~~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~~~-~~~~P~g~~iy  199 (302)
T 3s25_A          135 RIDG--------E----EKKKIKNHYL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCY-KPVVLDDTNVY  199 (302)
T ss_dssp             ETTS--------C----CCEEEESSCC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSCEE-EEEEEETTEEE
T ss_pred             ECCC--------C----CeEEEeCCCc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCCcc-ceeeecCCEEE
Confidence            2211        0    1122322322  345677877776554 67888888876654444332111 23457888777


Q ss_pred             EEc-C--CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC--CCeEEEEEcccCccccceeeeeeecCCcC
Q 009993          291 STS-G--SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE--DGAIHMYEIINDCTEANVLLVATWIPHTG  365 (520)
Q Consensus       291 ~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  365 (520)
                      -.. +  ..|..-++..... ..+..   ..+  ..++|+++.|.-+..  .+.|..-++.....    ..+  ..+   
T Consensus       200 ~t~~~~~~~I~~~~ldG~~~-~~Lt~---~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r----~~l--~~~---  264 (302)
T 3s25_A          200 YMDVNRDNAIVHVNINNPNP-VVLTE---ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGF----KEL--AKG---  264 (302)
T ss_dssp             EEEGGGTTEEEEECSSSCCC-EECSC---SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCCC----EEE--EES---
T ss_pred             EEEcCCCcEEEEEECCCCCe-EEEeC---CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCcc----EEe--eCC---
Confidence            655 3  3677777765543 33321   223  337788888876533  35566666655421    111  111   


Q ss_pred             CEEEEEecCCEEEEEe-CCCcEEEEe
Q 009993          366 PVNSLAFEFPWLVSAA-GDGKLSLID  390 (520)
Q Consensus       366 ~v~~l~~~~~~l~s~s-~dg~i~vwd  390 (520)
                      .+..+....++|+-.. ..+.|..-+
T Consensus       265 ~~~~i~i~~d~Iy~td~~~~~i~~~~  290 (302)
T 3s25_A          265 EFCNINVTSQYVYFTDFVSNKEYCTS  290 (302)
T ss_dssp             CEEEEEECSSEEEEEETTTCCEEEEE
T ss_pred             ccceEEEeCCEEEEEECCCCeEEEEE
Confidence            3456666666655554 334444333

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=80.37  E-value=17  Score=35.13  Aligned_cols=55  Identities=13%  Similarity=0.052  Sum_probs=34.9

Q ss_pred             ccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec------CCcCCEEEEEecC
Q 009993          316 VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI------PHTGPVNSLAFEF  374 (520)
Q Consensus       316 ~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~~  374 (520)
                      -.....|+|.|+|+++++-...+.|++++..++..    ..+..+.      ........|+|+|
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~----~~~~~~~~~~~~~~g~~Gllgia~~P   86 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSV----KTVFQVPEIVNDADGQNGLLGFAFHP   86 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE----EEEEECTTCCCCTTSSCSEEEEEECT
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE----eEEecCCccccccCCCCceeEEEECC
Confidence            34567999999999777654445788887654421    2222221      1245678999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	520
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-16
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-16
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-16
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-14
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-12
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-04
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	3e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.002
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.001
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.002
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	9e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	3e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-05
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	4e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	7e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.002
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.003
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.4 bits (194), Expect = 1e-16
 Identities = 40/321 (12%), Positives = 89/321 (27%), Gaps = 38/321 (11%)

Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKL 196
            L GH   +  +     ++LL ++  D  + +W       + +       +   A     
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS- 108

Query: 197 LVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD 256
                 +             +         + ++              LD  +I + S D
Sbjct: 109 -----GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163

Query: 257 MTVRVWDRALLKCLKVLRHSD----WVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVN 312
            T  +WD    +              +         V+    +   +WD   G       
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223

Query: 313 GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF 372
           G H  +  ++     G+   TG +D    ++++  D          +       + S++F
Sbjct: 224 G-HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY----SHDNIICGITSVSF 278

Query: 373 --EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD 430
                 L++   D   ++ D              R             L G +  +  + 
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDAL---------KADRAGV----------LAGHDNRVSCLG 319

Query: 431 IGAD--RIVCGGEEGIVRIWN 449
           +  D   +  G  +  ++IWN
Sbjct: 320 VTDDGMAVATGSWDSFLKIWN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.5 bits (189), Expect = 3e-16
 Identities = 49/313 (15%), Positives = 95/313 (30%), Gaps = 66/313 (21%)

Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKL 196
            L GH   V  V       ++ ++  D+ +++W  E G    + K    +++ ++ D   
Sbjct: 12  ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71

Query: 197 LVAGGTDGFIHCWRAVEVLPHLFD-------------------------------ISGSE 225
            +       +                                             +   +
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 226 KQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGL 282
                     H   +  +    D T I S S D TVRVW  A  +C   LR H   V  +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191

Query: 283 A---------------------PHDTTVASTSGSD--VYIWDTNSGCLLTVVNGAHVGNT 319
           +                             +   D  + +WD ++G  L  + G H    
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG-HDNWV 250

Query: 320 KSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWL 377
           + +     G F+ +  +D  + +++  N         + T   H   V SL F    P++
Sbjct: 251 RGVLFHSGGKFILSCADDKTLRVWDYKNKR------CMKTLNAHEHFVTSLDFHKTAPYV 304

Query: 378 VSAAGDGKLSLID 390
           V+ + D  + + +
Sbjct: 305 VTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.7 bits (174), Expect = 2e-14
 Identities = 41/230 (17%), Positives = 83/230 (36%), Gaps = 18/230 (7%)

Query: 131 WKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIAS--SKPLGCTIR 188
             E I  ++GH   V +V ++ +   + ++  D  ++MW ++ G+ + +         + 
Sbjct: 90  GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 149

Query: 189 AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA---- 244
               D  L+ +   D  +  W  V       ++                   +       
Sbjct: 150 RPNQDGTLIASCSNDQTVRVWV-VATKECKAELREHRHVVECISWAPESSYSSISEATGS 208

Query: 245 ------LDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTSG- 294
                      + SGS D T+++WD +   CL  L  H +WV G+        + S +  
Sbjct: 209 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD 268

Query: 295 SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE 344
             + +WD  +   +  +N  H     SL    T  ++ TG  D  + ++E
Sbjct: 269 KTLRVWDYKNKRCMKTLNA-HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.8 bits (143), Expect = 2e-10
 Identities = 28/170 (16%), Positives = 48/170 (28%), Gaps = 17/170 (10%)

Query: 98  ASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELIDVLYGHTEAVLTVFVLASAKLL 157
            S+    + +                         E             T         L
Sbjct: 161 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFL 220

Query: 158 FTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVL 215
            +   D  ++MW +  G  + +       +R V   +  K +++   D  +  W      
Sbjct: 221 LSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW------ 274

Query: 216 PHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWD 263
               D        T   L  HE  +TSL        + +GS D TV+VW+
Sbjct: 275 ----DYKNKRCMKT---LNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.6 bits (140), Expect = 5e-10
 Identities = 31/268 (11%), Positives = 69/268 (25%), Gaps = 58/268 (21%)

Query: 236 HEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGL---------- 282
           H  P+T +      + + S S D T++VWD       + L+ H+D V  +          
Sbjct: 16  HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 75

Query: 283 ----------------------------------APHDTTVASTSGSDVYIWDTNSGCLL 308
                                              P+   + S S               
Sbjct: 76  SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 135

Query: 309 TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN 368
                 H    + +  +  G  + +   D  + ++ +            A    H   V 
Sbjct: 136 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE------CKAELREHRHVVE 189

Query: 369 SLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML-----HGFE 423
            +++      S+  +   S             +  +  +  +        L     H   
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249

Query: 424 CNLLSVDIGADRIVCGGEEGIVRIWNFS 451
              +    G   I+   ++  +R+W++ 
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYK 277

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (187), Expect = 6e-16
 Identities = 53/352 (15%), Positives = 113/352 (32%), Gaps = 52/352 (14%)

Query: 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAA 192
           +   VL GH + V+T         + +   D+ +++W    G  + +       + +   
Sbjct: 7   KSPKVLKGHDDHVITCLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM 65

Query: 193 DKKLLVAGGTDGFIHCWRAVEVLPHLF---------------------------DISGSE 225
              ++++G TD  +  W A                                    +   E
Sbjct: 66  RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE 125

Query: 226 KQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPH 285
                  L  H   +  +  D  R+ SG++D  V+VWD     CL  L+           
Sbjct: 126 TGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF 185

Query: 286 DTTVASTSGSD--VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY 343
           D     +   D  + +WD  +G  +  + G     +         + L +G  D  + ++
Sbjct: 186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS---GMELKDNILVSGNADSTVKIW 242

Query: 344 EIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSG 403
           +I        +  +     H   V  L F   ++++++ DG + L D++         +G
Sbjct: 243 DIKTGQ---CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK---------TG 290

Query: 404 KRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEG----IVRIWNFS 451
           + +  ++ +E       G     +           G   G     + + +F 
Sbjct: 291 EFIRNLVTLESGG---SGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 9e-09
 Identities = 39/219 (17%), Positives = 71/219 (32%), Gaps = 29/219 (13%)

Query: 236 HEGPI-TSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTS 293
           H+  + T L     RI SGS D T++VW     KCL+ L  H+  V+     D  + S S
Sbjct: 15  HDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGS 74

Query: 294 GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN 353
                            ++  +   +           + +G  D  + +++I        
Sbjct: 75  TDRTLKVWNAETG--ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL-- 130

Query: 354 VLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVE 413
                  + H   V  + ++   +VS A D  + + D                      E
Sbjct: 131 ----HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET-------------------E 167

Query: 414 PPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQ 452
                L G    + S+      +V G  +  +R+W+   
Sbjct: 168 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVET 206

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (176), Expect = 1e-14
 Identities = 45/289 (15%), Positives = 103/289 (35%), Gaps = 39/289 (13%)

Query: 138 LYGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKL 196
           ++  +E    V+ L    + + +   D+ +++W                ++  +  D+++
Sbjct: 8   IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67

Query: 197 LVAGGTDGFIHCWRAVEVLPH------------------------------LFDISGSEK 226
           ++ G +D  +  W                                      ++D++    
Sbjct: 68  IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 127

Query: 227 QNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHD 286
              +  L  H   +  +  D   I S S D T++VW+ +  + ++ L           + 
Sbjct: 128 ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR 187

Query: 287 TTVASTSGSD--VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE 344
             +  +  SD  + +WD   G  L V+ G                 + +G  DG I +++
Sbjct: 188 DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC---IRFDNKRIVSGAYDGKIKVWD 244

Query: 345 I---INDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLID 390
           +   ++    A  L + T + H+G V  L F+   +VS++ D  + + D
Sbjct: 245 LVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (155), Expect = 5e-12
 Identities = 37/163 (22%), Positives = 62/163 (38%), Gaps = 6/163 (3%)

Query: 101 HHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELIDVLYGHTEAVLTVFVLASAKLLFTS 160
           H A            ++++        + S  E +  L GH   +  +      +L+ + 
Sbjct: 137 HRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSG 194

Query: 161 GYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD 220
             D+ +R+W +E G  +   +     +R +  D K +V+G  DG I  W     L    D
Sbjct: 195 SSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWD----LVAALD 250

Query: 221 ISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWD 263
                       L EH G +  L  D  +I S S D T+ +WD
Sbjct: 251 PRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 2e-08
 Identities = 37/219 (16%), Positives = 76/219 (34%), Gaps = 25/219 (11%)

Query: 235 EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTS 293
           E    +  L  D  +I SG  D T+++WD+  L+C ++L  H+  V  L   +  +    
Sbjct: 13  ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII--- 69

Query: 294 GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN 353
                   T     +      +       A  H                  + +  +  +
Sbjct: 70  --TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 127

Query: 354 VLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVE 413
           + L    + H   VN + F+  ++VSA+GD  + + +           + + V       
Sbjct: 128 ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS---------TCEFV------- 171

Query: 414 PPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQ 452
              R L+G +  +  +      +V G  +  +R+W+   
Sbjct: 172 ---RTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC 207

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.1 bits (149), Expect = 5e-11
 Identities = 35/166 (21%), Positives = 57/166 (34%), Gaps = 22/166 (13%)

Query: 157 LFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR---------AVAADKKLLVAGGTDGFIH 207
           +     D  VR+W  E GF +        +               D + +V+G  D  + 
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279

Query: 208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRA 265
            W  ++   +  D         +     H+  + S+A   +   I SGS D  V  WD+ 
Sbjct: 280 LWN-LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338

Query: 266 LLKCLKVLR-HSDWVYGLA--------PHDTTVASTSG-SDVYIWD 301
               L +L+ H + V  +A        P     A+ SG     IW 
Sbjct: 339 SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.7 bits (148), Expect = 6e-11
 Identities = 56/342 (16%), Positives = 103/342 (30%), Gaps = 48/342 (14%)

Query: 85  GIVSCV--SPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELIDVLYGHT 142
            +V CV  S     LA+  +   + Y    G  +A     +  + D              
Sbjct: 63  SVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTS-SSPSSD 121

Query: 143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGT 202
             + +V      K L T   D ++R+W +E+   +   +     I ++            
Sbjct: 122 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG 181

Query: 203 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVW 262
            G                    E   T   +   +G           I +GS D  VRVW
Sbjct: 182 SGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK---------YIAAGSLDRAVRVW 232

Query: 263 DRALLKCLKVLR--------HSDWVYGLA--PHDTTVASTS------------GSDVYIW 300
           D      ++ L         H D VY +       +V S S             ++    
Sbjct: 233 DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 292

Query: 301 DTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW 360
            T +     V    H     S+A +   +++ +G +D  +  ++        +   +   
Sbjct: 293 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK------KSGNPLLML 346

Query: 361 IPHTGPVNSLAF--------EFPWLVSAAGDGKLSLIDVRKL 394
             H   V S+A         E+    + +GD K  +   +K+
Sbjct: 347 QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.8 bits (143), Expect = 2e-10
 Identities = 58/341 (17%), Positives = 113/341 (33%), Gaps = 41/341 (12%)

Query: 140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVA 199
            HT  V  V      + L T G +   +++ + DG  +A         +    +     +
Sbjct: 60  DHTSVVCCVKFSNDGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPE-NLNTSSS 117

Query: 200 GGTDGFIHCWR----------AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTR 249
             +D +I                E          + K     +  E +           +
Sbjct: 118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 177

Query: 250 IYSGSWDMTVRVWDRALLKCLKVLRHSD---WVYGLAPHDTTVASTSG-SDVYIWDTNSG 305
           + SGS D TVR+WD    +C   L   D    V         +A+ S    V +WD+ +G
Sbjct: 178 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 237

Query: 306 CLLTVVNG------AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIN------DCTEAN 353
            L+  ++        H  +  S+  +  G  + +G  D ++ ++ + N        T  +
Sbjct: 238 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 297

Query: 354 VLLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE 411
                T+I H   V S+A      +++S + D  +   D +         SG  +  +  
Sbjct: 298 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK---------SGNPLLMLQG 348

Query: 412 VEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQ 452
                  +     + L  +   +    G  +   RIW + +
Sbjct: 349 HRNSVISVAVANGSSLGPE--YNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 6e-04
 Identities = 23/243 (9%), Positives = 61/243 (25%), Gaps = 34/243 (13%)

Query: 232 RLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--------------- 274
           +  +H   +  +    D   + +G  + T +V+  +    +  L                
Sbjct: 57  KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTS 115

Query: 275 ----HSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDF 330
                  ++  +          +G++  +          +V           +  +    
Sbjct: 116 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 175

Query: 331 LFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLID 390
                  G+      I D       L  +       V     +  ++ + + D  + + D
Sbjct: 176 DKL--VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 233

Query: 391 VRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNF 450
                          +   ++ E      H      +        +V G  +  V++WN 
Sbjct: 234 SET----------GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 283

Query: 451 SQA 453
             A
Sbjct: 284 QNA 286

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (124), Expect = 3e-09
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 59  LHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWG---LP 115
             R  I+ LP  L   +L+ L+PK+L   +        LA D+  W+E   E      L 
Sbjct: 14  FQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH 73

Query: 116 IASAPLGAGFSDDKSWKEL 134
           I    +         WK  
Sbjct: 74  IKRRKVIKPGFIHSPWKSA 92

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 5e-09
 Identities = 37/227 (16%), Positives = 58/227 (25%), Gaps = 39/227 (17%)

Query: 236 HEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGS 295
           H+  I S++   +   S S D  ++VWD  LL            Y    H + +      
Sbjct: 13  HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDK---SYSHFVHKSGLHHVDVL 69

Query: 296 DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV- 354
                D    CL                       + T    G +  Y I  +     V 
Sbjct: 70  QAIERDAFELCL-----------------------VATTSFSGDLLFYRITREDETKKVI 106

Query: 355 ---LLVATWIPHTGPVNSLAF-------EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGK 404
              L +           +L +           LV+    G   +             +  
Sbjct: 107 FEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN 166

Query: 405 RVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNF 450
             S  +E++              SVDI     I  G   G V+I   
Sbjct: 167 W-SPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISEL 212

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (128), Expect = 2e-08
 Identities = 39/334 (11%), Positives = 84/334 (25%), Gaps = 46/334 (13%)

Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG------------FSIASSKPLG 184
               H   + +V          +   D  +++W  +              F   S     
Sbjct: 9   AGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 185 CTIRAVAA---DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPIT 241
             ++A+     +  L+      G +  +R +        +   +       + +H     
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYR-ITREDETKKVIFEKLDLLDSDMKKHSFWAL 125

Query: 242 SLALD-----LTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSD 296
                       R+ +     T  +W                     P      S + + 
Sbjct: 126 KWGASNDRLLSHRLVATDVKGTTYIWK------------------FHPFADESNSLTLNW 167

Query: 297 VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL 356
               +        +          S+  S  G  + TG  +G + + E+       N   
Sbjct: 168 SPTLELQGTVESPMTPSQFA---TSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES 223

Query: 357 VATWIPHTGPVNSLAF-EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPP 415
             + I ++  + S+ F     L++ A D              G       V         
Sbjct: 224 QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASL 283

Query: 416 QRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWN 449
               H      LS +   + +   G +G +R W+
Sbjct: 284 GEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 317

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 39/276 (14%), Positives = 77/276 (27%), Gaps = 36/276 (13%)

Query: 88  SCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELIDVLYGHTEAVLT 147
           S    + HRL +       +  +       S  L   +S     +  ++     ++   +
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189

Query: 148 VFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAA--------DKKLLVA 199
           V  ++   L+ T   +  V++  L     + + +     I    +           LL  
Sbjct: 190 V-DISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 248

Query: 200 GGTDGFIHCWRAVEVLPHLFDISGSEKQNT---QFRLWEHEGPITSLAL--DLTRIYSGS 254
                   C    E        S S   ++       + H   + SL+       + S  
Sbjct: 249 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG 308

Query: 255 WDMTVRVWDRALLKCLKVLR-HSDWVYGLA------PHDTTVASTSGSDVYIWDTNSGCL 307
           WD  +R WD    + +  L  H D +           H  ++A     DV          
Sbjct: 309 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW--- 365

Query: 308 LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY 343
                       +S   +   + L     D +I  +
Sbjct: 366 ------------RSGMGADLNESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 6e-04
 Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 4/89 (4%)

Query: 363 HTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF 422
           H   + S++    + VS +GDG L + D +         + K  S    V          
Sbjct: 13  HDADIFSVSACNSFTVSCSGDGYLKVWDNK----LLDNENPKDKSYSHFVHKSGLHHVDV 68

Query: 423 ECNLLSVDIGADRIVCGGEEGIVRIWNFS 451
              +         +      G +  +  +
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYRIT 97

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 38/304 (12%), Positives = 94/304 (30%), Gaps = 54/304 (17%)

Query: 155 KLLFTSGYDSIVRMWHLEDG----------FSIASSKPLGCTIRAVA-------ADKKLL 197
            L+ T+ +   +  + +               +  S     +  A+             L
Sbjct: 80  CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRL 139

Query: 198 VAGGTDGFIHCWRAVEVLPHLFDISGS-----EKQNTQFRLWEHEGPITSLAL-DLTRIY 251
           VA    G  + W+          ++ +     E Q T           TS+ + +   I 
Sbjct: 140 VATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIA 199

Query: 252 SGSWDMTVRVWDRALLKCL-------KVLRHSDWVYGLAPHDTTVASTSGSD------VY 298
           +G  + TV++ + + L+ L        ++ +S+ +  +             D      + 
Sbjct: 200 TGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCIT 259

Query: 299 IWDTNSGCLLTVVNGAHVGNTKSL------------ARSHTGDFLFTGGEDGAIHMYEII 346
           +++T  G  +  ++     +  SL            + + +G+ L + G DG +  +++ 
Sbjct: 260 LYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV- 318

Query: 347 NDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRV 406
                     + T   H   +                 +  + DV+ L +  R   G  +
Sbjct: 319 -----KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADL 373

Query: 407 SRVI 410
           +  +
Sbjct: 374 NESL 377

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.0 bits (130), Expect = 7e-09
 Identities = 37/322 (11%), Positives = 87/322 (27%), Gaps = 29/322 (9%)

Query: 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIAS-SKPLGCTIRAVA 191
            +  V YGH +A+  +   A  K LF++  +  +  W +  G S           I  + 
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 192 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIY 251
              K               + +    +    GS   +++    +       LA+      
Sbjct: 63  TTSK---------GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDI 113

Query: 252 SGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVV 311
           + +                  + ++     L+     VA             SG  ++ V
Sbjct: 114 AVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEV 173

Query: 312 NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLA 371
                    +              +     +   + +  E       T+        S +
Sbjct: 174 KTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS 233

Query: 372 FEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI 431
            +   L + + D  + + ++ K                   + P  +      + ++  I
Sbjct: 234 PDNVRLATGSLDNSVIVWNMNK-----------------PSDHPIIIKGAHAMSSVNSVI 276

Query: 432 GAD--RIVCGGEEGIVRIWNFS 451
             +   IV  G++  ++ WN  
Sbjct: 277 WLNETTIVSAGQDSNIKFWNVP 298

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 5e-08
 Identities = 45/295 (15%), Positives = 93/295 (31%), Gaps = 51/295 (17%)

Query: 140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT-----IRAVA--A 192
            H E V  V +    + ++T G    V++W +    + +    L C      IR+     
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 193 DKKLLVAGGTDGFIHCWRAVEVLPHLFD-------------------------------- 220
           D   L+ GG    +  W      P +                                  
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167

Query: 221 -ISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWV 279
               ++    QF+          ++ D T++++G  D TVR WD    + L+    +  +
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI 227

Query: 280 YGLAPHDT-TVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG 338
           + L    T    +       +   +           H     SL  ++ G +  + G+D 
Sbjct: 228 FSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDN 287

Query: 339 AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDV 391
            ++ +           +        +  V S     +  ++V+ +GD K ++ +V
Sbjct: 288 LLNAW----RTPYGASIFQ---SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 4e-06
 Identities = 14/107 (13%), Positives = 31/107 (28%), Gaps = 6/107 (5%)

Query: 249 RIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTSGSDVYIWDTNSGC 306
           +      D  +        + +  L H + V  +        V +     V +WD +   
Sbjct: 24  QPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPG 83

Query: 307 ----LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC 349
               +  +         +S      G  L  GGE   + ++++    
Sbjct: 84  NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 32/273 (11%), Positives = 65/273 (23%), Gaps = 32/273 (11%)

Query: 210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWD---- 263
           + V   P      G  +   Q     H   + ++ +      +Y+G     V+VWD    
Sbjct: 24  QPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHP 82

Query: 264 --RALLKCLKVLRHSDWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNT 319
             ++ +  L  L   +++      P   T+     +        +     +         
Sbjct: 83  GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP 142

Query: 320 KSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVS 379
              A + + D           ++                     +    S      W   
Sbjct: 143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG 202

Query: 380 AAGDGK---------------------LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRM 418
                +                     L      + L  G  +S   V  V + +  Q  
Sbjct: 203 LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH 262

Query: 419 LHGFECNLLSVDIGADRIVCGGEEGIVRIWNFS 451
           LH      L         V  G++ ++  W   
Sbjct: 263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 139 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR-AVAADKKLL 197
           + H   VL++      K   ++G D+++  W    G SI  SK     +   ++ D K +
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYI 321

Query: 198 VAGGTDGFIHCW 209
           V G  D     +
Sbjct: 322 VTGSGDKKATVY 333

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.6 bits (124), Expect = 5e-08
 Identities = 41/316 (12%), Positives = 75/316 (23%), Gaps = 12/316 (3%)

Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-ADKK 195
            L GH  +V+T         + T   D ++R++   +   +         + A+  A   
Sbjct: 7   TLRGHMTSVITCLQF-EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSW 255
           +LV+G TD  +  W   +          +        +                I +GS 
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI---------KYIVTGSR 116

Query: 256 DMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAH 315
           D T+ VW       +           +           G       +             
Sbjct: 117 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS 176

Query: 316 VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP 375
                +L               G            E    + A+        +    E  
Sbjct: 177 GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM 236

Query: 376 WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADR 435
           + +         L    K L S       R     +        H     + +  +  D 
Sbjct: 237 YTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVS-DN 295

Query: 436 IVCGGEEGIVRIWNFS 451
           I+  G E    I+N  
Sbjct: 296 ILVSGSENQFNIYNLR 311

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 32/244 (13%), Positives = 64/244 (26%), Gaps = 18/244 (7%)

Query: 160 SGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLF 219
              D+ + +W L    S+                ++     G                  
Sbjct: 114 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNI 173

Query: 220 DISGSEKQNTQFRLWEHEGPITSLALDLTR------------IYSGSWDMTVRVWDRALL 267
            +SGS               +  L+    R              S S D T+R+WD    
Sbjct: 174 VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN- 232

Query: 268 KCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT 327
             L                +     S +             +     H  N  ++   + 
Sbjct: 233 GELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYV 292

Query: 328 GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLS 387
            D +   G +   ++Y +      +  L+ A  +     + S+ F+   LV+A      S
Sbjct: 293 SDNILVSGSENQFNIYNL-----RSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQS 347

Query: 388 LIDV 391
            +++
Sbjct: 348 FLEI 351

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 9e-08
 Identities = 32/316 (10%), Positives = 64/316 (20%), Gaps = 43/316 (13%)

Query: 155 KLLFTSGYDSIVRMWHLEDGFSIASSKPLG---CTIRAVA----ADKKLLVAGGTDGFIH 207
            + +  G  + VR     D       +  G     +  V        + L +G   G + 
Sbjct: 31  AIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI 90

Query: 208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD----LTRIYSGSWDMTVRVWD 263
            W           +  + K   Q       GPI+ ++ D       +     D       
Sbjct: 91  VWG-WTFDKESNSVEVNVKSEFQ----VLAGPISDISWDFEGRRLCVVGEGRDNFGVFIS 145

Query: 264 RALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNG-------AHV 316
                 L  +              +    S +                            
Sbjct: 146 WDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG 205

Query: 317 GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPW 376
              + +  S                             +         G       +   
Sbjct: 206 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK 265

Query: 377 LVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI---GA 433
             +   D  + + DV          + K V +          L   +     V +   G 
Sbjct: 266 FATVGADATIRVWDVT---------TSKCVQKWT--------LDKQQLGNQQVGVVATGN 308

Query: 434 DRIVCGGEEGIVRIWN 449
            RI+    +G +  + 
Sbjct: 309 GRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (100), Expect = 4e-05
 Identities = 34/283 (12%), Positives = 68/283 (24%), Gaps = 22/283 (7%)

Query: 127 DDKSWKELIDVLYGHTEAVLTVFVLA---SAKLLFTSGYDSIVRMWHLEDGFSIASSKPL 183
           D  S    +    GH  +V+T    +    ++ L +      V +W         S +  
Sbjct: 47  DGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVN 106

Query: 184 GCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSL 243
             +   V A     ++   +G   C            IS     +        +      
Sbjct: 107 VKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACH 166

Query: 244 ALDLTRIYSGSWDMTVRVWDRALLKCLKVL------RHSDWVYGLAPHDT------TVAS 291
                 + S +      V                  +   +V  +           TV S
Sbjct: 167 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 226

Query: 292 TSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE 351
                 +   +         +   V                T G D  I ++    D T 
Sbjct: 227 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVW----DVTT 282

Query: 352 ANVLLVATWIPHTGPVNSLAFEFP---WLVSAAGDGKLSLIDV 391
           +  +   T          +         ++S + DG L+  ++
Sbjct: 283 SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.5 bits (116), Expect = 4e-07
 Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 6/113 (5%)

Query: 265 ALLKCL-KVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLA 323
           AL   L +  R +  V G  P    +   +G+ VY     S     +    H   T    
Sbjct: 7   ALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTE-HSHQTTVAK 65

Query: 324 RSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPW 376
            S +G +  +G   G + +++              T    +GPV  ++++   
Sbjct: 66  TSPSGYYCASGDVHGNVRIWDTTQTTHILK----TTIPVFSGPVKDISWDSES 114

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.7 bits (114), Expect = 7e-07
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 246 DLTRIYSGSWDMTVRVWDRALLKCLKVL----RHSDWVYGLAPHDTTVASTSGS-DVYIW 300
           D T+I S S D T+++W+ A LK  K +    R  D   G+      + S S +  +   
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

Query: 301 D 301
           +
Sbjct: 309 N 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.6 bits (111), Expect = 2e-06
 Identities = 26/264 (9%), Positives = 66/264 (25%), Gaps = 9/264 (3%)

Query: 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAA 192
              ++   H+          S     +      VR+W       I  +     +      
Sbjct: 49  TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI 108

Query: 193 DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYS 252
                            R   V       S          +   +   +     ++    
Sbjct: 109 SWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD 168

Query: 253 GSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSG------C 306
            +  +      +      +  +    V          ++     + +++   G       
Sbjct: 169 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE 228

Query: 307 LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP 366
             ++ N AH G+   L  S  G  + +   D  I ++  +        + V T       
Sbjct: 229 DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN-VATLKVEKTIPVGT--RIEDQ 285

Query: 367 VNSLAFEFPWLVSAAGDGKLSLID 390
              + +    LVS + +G ++ ++
Sbjct: 286 QLGIIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 14/97 (14%), Positives = 27/97 (27%), Gaps = 5/97 (5%)

Query: 250 IYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSG-SDVYIWDTNSGCLL 308
              G+            +     +    W     P  T +AS S    + IW+  +  + 
Sbjct: 218 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWS----PDGTKIASASADKTIKIWNVATLKVE 273

Query: 309 TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 345
             +        + L    T   L +   +G I+    
Sbjct: 274 KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 22/295 (7%), Positives = 63/295 (21%), Gaps = 18/295 (6%)

Query: 157 LFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEV 214
                  + V    +                             +G   G +  W   + 
Sbjct: 31  KIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT 90

Query: 215 LPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR 274
              L           +   W+ E    +   +    +   +       +  L    + + 
Sbjct: 91  THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN 150

Query: 275 HSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG 334
             D+         + +  +   ++             +   V + +              
Sbjct: 151 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 210

Query: 335 GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKL 394
           G     +  +        +  L       +    + + +   + SA+ D  + + +V   
Sbjct: 211 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA-- 268

Query: 395 LRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWN 449
                  + K    +        +    E   L +      +V     G +   N
Sbjct: 269 -------TLKVEKTI-------PVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.6 bits (114), Expect = 8e-07
 Identities = 24/292 (8%), Positives = 57/292 (19%), Gaps = 35/292 (11%)

Query: 147 TVFVLASAKLLFTSG-YDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGF 205
            +   ++       G     V ++        A  +        V     +         
Sbjct: 60  FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKT 119

Query: 206 IHCWRAVEVLPHLFDISGSEKQNTQFR-----LWEHEGPITSLAL--DLTRIYSGS-WDM 257
           +  ++              +                  P T      D +        + 
Sbjct: 120 LLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG 179

Query: 258 TVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVG 317
           T  +    +         +   Y          + +G    I  ++          A   
Sbjct: 180 TPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTE 239

Query: 318 NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA--------NVLLVATW-----IPHT 364
             ++      G                +                VL   T          
Sbjct: 240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG 299

Query: 365 GPVNSLAF----EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEV 412
             ++S+      +      + GD  L + D           SG+ +  V ++
Sbjct: 300 HEIDSINVSQDEKPLLYALSTGDKTLYIHDAE---------SGEELRSVNQL 342

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 16/175 (9%), Positives = 38/175 (21%), Gaps = 32/175 (18%)

Query: 237 EGPITSLAL--DLTRIY-----SGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDT 287
           + P    A   D  R+Y       +      V D    + + ++    ++         +
Sbjct: 1   DEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI-DGGFLPNPVVADDGS 59

Query: 288 TVASTSGSD-----------VYIWDTNSGCLLTVVN------GAHVGNTKSLARSHTGDF 330
            +A  S              V ++D  +      +                 + +  G  
Sbjct: 60  FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKT 119

Query: 331 LFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGK 385
           L       A  +  +  +            +      +              DG 
Sbjct: 120 LLFYQFSPAPAVGVVDLEGKA-----FKRMLDVPDCYHIFPTAPDTFFMHCRDGS 169

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 9e-07
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 59  LHRSTITDLPPALISE----ILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERW 112
           L R  IT LP   +      IL+ LD K L     V    +R+ SD   WK+      
Sbjct: 6   LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMV 63

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 1e-06
 Identities = 33/286 (11%), Positives = 74/286 (25%), Gaps = 27/286 (9%)

Query: 186 TIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSL 243
            I  +     K LL+    DG +  +                K     +   ++ P+   
Sbjct: 13  YISDIKIIPSKSLLLITSWDGSLTVY----------KFDIQAKNVDLLQSLRYKHPLLCC 62

Query: 244 AL---DLTRIYSGSWDMTVRVWDRA-----LLKCLKVLRHSDWVYGLAPHDTTVASTSGS 295
                   +IY G+    +   D                           D  +A++   
Sbjct: 63  NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDG 122

Query: 296 DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT-----GDFLFTGGEDGAIHMYEIINDCT 350
            + + D  +     +       N   +             L  G  +  +  + +     
Sbjct: 123 LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED 182

Query: 351 EANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVI 410
           +   +  +        V  L  E      ++ DG++++       +     S KR +   
Sbjct: 183 DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD--QGDDYNSSKRFAFRC 240

Query: 411 EVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEI 456
                +     +  N +        +   G +GI+  WN     +I
Sbjct: 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 5e-06
 Identities = 17/147 (11%), Positives = 40/147 (27%), Gaps = 12/147 (8%)

Query: 162 YDSIVRMWHLEDGFSIASSKPLG------CTIRAVAADKKLLVAGGTDGFIHCW--RAVE 213
            +S V+ + L        +            +  +  +++       DG +         
Sbjct: 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227

Query: 214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLK 271
              +              +      P+ S+        +Y+   D  +  W+    K +K
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287

Query: 272 VLR--HSDWVYGLAPHDTTVASTSGSD 296
                + D V  +A  D  +   +  D
Sbjct: 288 NFAKFNEDSVVKIACSDNILCLATSDD 314

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 28/287 (9%), Positives = 72/287 (25%), Gaps = 22/287 (7%)

Query: 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPL---GCTIRA 189
           +++ +     + +  + ++ S  LL  + +D  + ++  +                 +  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 190 VA---ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD 246
                     +  G   G I     +         +              +  + + + D
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121

Query: 247 LTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGC 306
                    +    V     L        +            +   + S V  +      
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE 181

Query: 307 LLTV---VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP- 362
                   +G               +       DG + +    +   + N      +   
Sbjct: 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241

Query: 363 --------HTGPVNSLAF--EFPWLVSAAGDGKLSLIDV--RKLLRS 397
                      PVNS+ F     +L +A  DG +S  ++  RK +++
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN 288

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.2 bits (110), Expect = 3e-06
 Identities = 17/164 (10%), Positives = 36/164 (21%), Gaps = 31/164 (18%)

Query: 250 IYSGSWDMTVRVWDRALLKC--------LKVLRHSDWVYGLAPHDTTVASTSGSDVYIWD 301
           +Y  S+       DR +L            +               ++ S +G       
Sbjct: 193 LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDM 252

Query: 302 TNSGCLLTVVNG---------AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA 352
                 + V  G         + +             +     E G +  Y+        
Sbjct: 253 YKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD-------- 304

Query: 353 NVLLVATWIPHTGPVNSLAFEFP---WLVSAAGDGKLSLIDVRK 393
             +           +  L         ++    DGK+    + K
Sbjct: 305 --VKTRKVTEVKNNLTDLRLS-ADRKTVMVRKDDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.2 bits (97), Expect = 1e-04
 Identities = 43/351 (12%), Positives = 80/351 (22%), Gaps = 41/351 (11%)

Query: 116 IASAPLGAGFSDDKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDS--IVRMWHLED 173
           IA    G  F  D S   ++ V       +  V      K+ F  G      + ++    
Sbjct: 18  IAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT 75

Query: 174 GFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL 233
           G +    + LG                  D F      +E           E   T F +
Sbjct: 76  GKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI 135

Query: 234 WEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRH--SDWVYGLAPHDTTVAS 291
            ++   I            G     + V+D    K          D+          +  
Sbjct: 136 SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYY 195

Query: 292 TSGSD-VYIWDTNSGCLLTVVNG------AHVGNTKSLARSHTGDFLFTGGEDGA-IHMY 343
            S        D         V           G+               G  D   ++  
Sbjct: 196 LSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKR 255

Query: 344 EIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPT 401
               +    +  ++          +         +   A   G L   DV+         
Sbjct: 256 SSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT-------- 307

Query: 402 SGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNF 450
                          R +   + NL  + + AD   ++   ++G +  +  
Sbjct: 308 ---------------RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.1 bits (107), Expect = 5e-06
 Identities = 33/292 (11%), Positives = 66/292 (22%), Gaps = 42/292 (14%)

Query: 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--------SIASSK--- 181
           E++  + GH + +  +    +   L +  YD  +  W              S+ +SK   
Sbjct: 4   EVLKTISGHNKGITAL----TVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQE 59

Query: 182 ---------------------PLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD 220
                                       A       ++    D  I      +++  +  
Sbjct: 60  YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL 119

Query: 221 ISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVY 280
            S     +             +                                 +    
Sbjct: 120 NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA 179

Query: 281 GLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI 340
           G       +      +V                       +       D + TG  D  I
Sbjct: 180 GDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNI 239

Query: 341 HMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP-WLVSAAGDGKLSLIDV 391
            +Y +          ++     H   VN+L +E P  LVS+  D  +   +V
Sbjct: 240 FIYSVKRPMK-----IIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.3 bits (108), Expect = 5e-06
 Identities = 20/195 (10%), Positives = 43/195 (22%), Gaps = 22/195 (11%)

Query: 89  CVSPILHRLASDHH----AWKEFYCERWGLPIASAPLGAGFSDDKSWKELIDVLYGHTEA 144
             +    +L            E        PI S         D               A
Sbjct: 141 AWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPD-VLAVWNQHESSGVMA 199

Query: 145 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA-SSKPLGCTIRAVAADKKLLVAGGTD 203
                          + Y + +    LE G       + +     + A +     A G  
Sbjct: 200 TPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY 259

Query: 204 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRV 261
             +  +                ++N   +         S+ +  D + ++ G     +  
Sbjct: 260 NVLESFDL--------------EKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAA 305

Query: 262 WDRALLKCLKVLRHS 276
           +D   L+    +   
Sbjct: 306 YDAETLEKKGQVDLP 320

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 18/139 (12%), Positives = 35/139 (25%), Gaps = 16/139 (11%)

Query: 250 IYSGSWDMTVRVWD---RALLKCLKVLRHSDWVYGLA--PHDTT--VASTSGSDVYIWDT 302
           I + +    + V D    A+ K + +             P              +   D 
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 303 NSGCLLTVVNGA----HVGNTKSLARSHTGDFLFTGGEDGAIHMYEI-----INDCTEAN 353
            +G  L  ++ +     V +    A S  G  L        + +             +A 
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123

Query: 354 VLLVATWIPHTGPVNSLAF 372
            L           +  LA+
Sbjct: 124 TLSRRKAFEAPRQITMLAW 142

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 28/225 (12%), Positives = 65/225 (28%), Gaps = 12/225 (5%)

Query: 239 PITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA--PHDTTVAS 291
           PI+  A   D T+I     +  V +++++  K ++V     H+  V G+   P    + +
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 292 TSG-SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHM---YEIIN 347
                + Y+W          +    +       R    +  F  G    +     +E  N
Sbjct: 69  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128

Query: 348 DCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVS 407
           D      +                       S     ++    ++++     PT      
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188

Query: 408 RVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQ 452
              E+        G+  + +       R+     +  V + +  +
Sbjct: 189 PFGELMFESSSSCGW-VHGVCFSANGSRVAWVSHDSTVCLADADK 232

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 10/81 (12%), Positives = 29/81 (35%), Gaps = 4/81 (4%)

Query: 275 HSDWVYGLA--PHDTTVASTSGS-DVYIWDTNSG-CLLTVVNGAHVGNTKSLARSHTGDF 330
             + +   A     T +A    + +V+I++ +    +       H G    +  +   + 
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 331 LFTGGEDGAIHMYEIINDCTE 351
           + T G D   +++ +     +
Sbjct: 66  IVTCGTDRNAYVWTLKGRTWK 86

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 39/331 (11%), Positives = 82/331 (24%), Gaps = 25/331 (7%)

Query: 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAA 192
             +  L  H   V  V     +  + T G D    +W L+      +   L     A   
Sbjct: 42  VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCV 101

Query: 193 DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYS 252
                      G      ++    +    +         +             +   + +
Sbjct: 102 RWAPNEKKFAVGSGSRVISI---CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 158

Query: 253 GSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVN 312
           GS D   R++   + +  +    + W   +   +    S+S          S     V  
Sbjct: 159 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW 218

Query: 313 GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT-----EANVLLVATWIPHTGPV 367
            +H                    E   +     I + +          ++ T+    G +
Sbjct: 219 VSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKL 278

Query: 368 NSLA-FEFPWLVSAAGDGKLSLID--VRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC 424
           +     + P   S  G           +K    G   +G  +  +          H    
Sbjct: 279 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL----------HKNSV 328

Query: 425 NLLSV----DIGADRIVCGGEEGIVRIWNFS 451
           + +SV         +    G +G + IW+  
Sbjct: 329 SQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (91), Expect = 3e-05
 Identities = 17/39 (43%), Positives = 20/39 (51%)

Query: 66  DLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAW 104
            LP  L+  I +CL   EL  VS V    +RLASD   W
Sbjct: 3   SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 19/152 (12%), Positives = 36/152 (23%), Gaps = 20/152 (13%)

Query: 258 TVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTSGSD-VYIWDTNSGCLLTV---- 310
            + + D +  +   VL     V+          +        V + D       TV    
Sbjct: 43  QIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK 102

Query: 311 VNGAHVGNTKSLARSHTGDFLFTGGE--------DGAIHMYEIINDCTEANVLLVATWIP 362
           +         S        +   G          DG     + I                
Sbjct: 103 IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQE--YH 160

Query: 363 HTGPVNSLAFEFP---WLVSAAGDGKLSLIDV 391
               V ++        ++V+    GK+ L+D 
Sbjct: 161 PEPRVAAILASHYRPEFIVNVKETGKILLVDY 192

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.4 bits (94), Expect = 4e-05
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 59  LHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDH-HAWKEFYC-ERWGLP 115
           L R  IT LP  +  +I N L  +++     VS   +++       WK+    E +  P
Sbjct: 1   LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSP 59

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.4 bits (101), Expect = 4e-05
 Identities = 10/163 (6%), Positives = 24/163 (14%), Gaps = 28/163 (17%)

Query: 248 TRIYSGSWDMTVRVWDRALLKCLKVL----------RHSDWVYGLAPHDTTVASTSGSD- 296
            R   G     V V+D      +  +               + G       +        
Sbjct: 87  ARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS 146

Query: 297 -VYIWDTNSGCLLTVVNG------AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC 349
                         +                    S       +           +    
Sbjct: 147 AAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV---- 202

Query: 350 TEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVR 392
                              +    +P ++  A    +   D+ 
Sbjct: 203 ------GAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIP 239

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 24/302 (7%), Positives = 52/302 (17%), Gaps = 56/302 (18%)

Query: 140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG----------FSIASSKPLGCTIRA 189
           G   A+ +                  V ++                   S  P    I  
Sbjct: 76  GSDFALASTS----FARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN 131

Query: 190 VAADKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-- 245
            A+   LL                          S                  T      
Sbjct: 132 CASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF--------HIHPGAAATHYLGSC 183

Query: 246 DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPH-DTTVASTSGSDVYIWDTNS 304
             +   S                       +        +    +     S +   D  +
Sbjct: 184 PASLAASDLAAAPAAAGIVGAQC---TGAQNCSSQAAQANYPGMLVWAVASSILQGDIPA 240

Query: 305 GCLLTVVN-----------GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN 353
                                     + +A+    D +     + +        + +   
Sbjct: 241 AGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT 300

Query: 354 V--LLVATWIPHTGPVNSLAF----EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVS 407
                 +  I +    +++            ++AG   L + D           S +  S
Sbjct: 301 ASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA---------SDQDQS 351

Query: 408 RV 409
            V
Sbjct: 352 SV 353

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.8 bits (99), Expect = 6e-05
 Identities = 34/283 (12%), Positives = 69/283 (24%), Gaps = 14/283 (4%)

Query: 242 SLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLAPH-DTT---VASTSGS 295
           +L      +   ++   + V D A     K                 D     V +    
Sbjct: 3   ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG 62

Query: 296 DVYIWDTNSGCLLTVVN-----GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT 350
           D+Y  D ++       N     G    +  S A S  G  ++             +    
Sbjct: 63  DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP 122

Query: 351 EANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVI 410
              V   A  +              +L+ AA DG L +                + +  +
Sbjct: 123 RLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPD---IYKMDVKTGKYTVAL 179

Query: 411 EVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLEN 470
            +    R  +     L      + R        I R  +  Q             + L+ 
Sbjct: 180 PLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT 239

Query: 471 RMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRG 513
                +   +++       +      +     NR + +  K+ 
Sbjct: 240 GKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQR 282

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 13/139 (9%), Positives = 34/139 (24%), Gaps = 14/139 (10%)

Query: 141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAG 200
            +            +   T+          L+ G +          +             
Sbjct: 207 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGL------RS 260

Query: 201 GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMT 258
             D          +    +D+    KQ    +    +     +A      ++Y G     
Sbjct: 261 PKDPNQIYGVLNRL--AKYDL----KQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFND 314

Query: 259 VRVWDRALLKCLKVLRHSD 277
           + V++   L+ +K ++   
Sbjct: 315 LAVFNPDTLEKVKNIKLPG 333

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.5 bits (90), Expect = 7e-04
 Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 252 SGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTT--VASTSGSDVYIWDTNSGCL 307
           + S    + V D    K    +       G    P  T   VA+   +DV I DT +  +
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 289 VASTSGSDVYIWDTNSGCLLTVVN-GAHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEII 346
           +AS     +++W+ N    LT+       G  + +  S    +L+ G   +  +  Y I 
Sbjct: 8   IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI- 66

Query: 347 NDCTEANVLLVATWIPHTGPVNSLAF 372
               +   L  A      G +  ++ 
Sbjct: 67  --APDDGALTFAAESALPGSLTHIST 90

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 18/134 (13%), Positives = 37/134 (27%), Gaps = 12/134 (8%)

Query: 252 SGSWDMTVRVWDRAL---LKCLKVLRHSDWVYGLA--PHDTTVASTSGSD----VYIWDT 302
           +      + VW+      L   +V+     V  +   P    +      +     Y    
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 303 NSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP 362
           + G L      A  G+   ++  H G F+F G  +        +    +   + V   + 
Sbjct: 69  DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN---AGNVSVTRLEDGLPVGVVDVVE 125

Query: 363 HTGPVNSLAFEFPW 376
                +S       
Sbjct: 126 GLDGCHSANISPDN 139

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.0 bits (87), Expect = 0.003
 Identities = 19/133 (14%), Positives = 38/133 (28%), Gaps = 22/133 (16%)

Query: 254 SWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSD-VYIWDTNSGCLLTVVN 312
           SW + V+  DR              +  L   +    +   +  + + D +S  ++ V++
Sbjct: 10  SWKVLVKPEDRP----------KKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID 59

Query: 313 GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF 372
             +         S +G +L   G D  I M     D        VA         +    
Sbjct: 60  TGY--AVHISRMSASGRYLLVIGRDARIDMI----DLWAKEPTKVAEIKIGIEARS---- 109

Query: 373 EFPWLVSAAGDGK 385
                     + +
Sbjct: 110 -VESSKFKGYEDR 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	520
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.98
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.92
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.88
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.83
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.81
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.8
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.74
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.72
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.69
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.66
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.64
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.61
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.57
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.47
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.42
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.39
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	99.3
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.29
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.27
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.25
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.13
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.03
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.02
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.95
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.79
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.7
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.62
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.56
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.53
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.47
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.46
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.43
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.36
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.34
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.26
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.1
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.95
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.94
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.64
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.63
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.54
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.46
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.46
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.46
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.36
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.31
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.25
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.14
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.84
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.79
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.77
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.74
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	96.64
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.29
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.73
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.56
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.48
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.34
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	95.19
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.97
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	94.86
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.66
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.09
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	93.55
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.25
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	91.5
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	91.17
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	89.88
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	89.12
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	88.38
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	85.92
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	85.88

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-38  Score=298.82  Aligned_cols=276  Identities=22%  Similarity=0.373  Sum_probs=245.6

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV  212 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~  212 (520)
                      ..+|+||+++|++++|+|++++|+||+.||+|+|||+.+++.+.++.+|...|.++.  +++.+++++..++.+.+|+..
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ   89 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccc
Confidence            467999999999999999999999999999999999999999999999999998776  899999999999999999976


Q ss_pred             cCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCC
Q 009993          213 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDT  287 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~  287 (520)
                      ...             ....+.+|...+.++.+  +++.+++++.|+.+++||+++++.+..+. |...+.++.  +++.
T Consensus        90 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (317)
T d1vyhc1          90 GFE-------------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT  156 (317)
T ss_dssp             SSC-------------EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred             ccc-------------cccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCC
Confidence            542             44456688999999999  77899999999999999999999988887 788888877  7889


Q ss_pred             EEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCC--------------------CCEEEEEeCCCeEEEEEcc
Q 009993          288 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT--------------------GDFLFTGGEDGAIHMYEII  346 (520)
Q Consensus       288 ~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~--------------------~~~l~tg~~dg~i~iwd~~  346 (520)
                      ++++++ |+.|++|+..+++....+. +|...+.++.++|+                    +.++++|+.|+.|++||++
T Consensus       157 ~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~  235 (317)
T d1vyhc1         157 LIASCSNDQTVRVWVVATKECKAELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS  235 (317)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred             EEEEEeCCCeEEEEeeccceeeEEEe-cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECC
Confidence            999988 9999999999999988887 58899999998875                    3578999999999999999


Q ss_pred             cCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcce
Q 009993          347 NDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC  424 (520)
Q Consensus       347 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (520)
                      ++      .++.++.+|...|++++|+|  ++|++|+.||.|++||+.++                   .+...+.+|..
T Consensus       236 ~~------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------------------~~~~~~~~h~~  290 (317)
T d1vyhc1         236 TG------MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-------------------RCMKTLNAHEH  290 (317)
T ss_dssp             TT------EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS-------------------CCCEEEECCSS
T ss_pred             CC------cEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCC-------------------cEEEEEcCCCC
Confidence            98      78888999999999999976  69999999999999999873                   34456678888


Q ss_pred             eeEEEEecC--CEEEEecCCCeEEEEe
Q 009993          425 NLLSVDIGA--DRIVCGGEEGIVRIWN  449 (520)
Q Consensus       425 ~v~~~~~~~--~~l~sg~~Dg~v~iwd  449 (520)
                      .|.++.+++  ++|+||+.||+|+|||
T Consensus       291 ~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         291 FVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            888887754  5999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-37  Score=295.29  Aligned_cols=274  Identities=21%  Similarity=0.288  Sum_probs=229.3

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcE-----EEEeCCCCceEEEEe--cCCCEEEEEeCCCcEE
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS-----IASSKPLGCTIRAVA--ADKKLLVAGGTDGFIH  207 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~-----~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~  207 (520)
                      ++++ +|...|+|++|+|+|++|+||+ ||.|+|||+.++..     .....+|...|.+++  |++++|++|+.||.|+
T Consensus        45 ~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~  122 (337)
T d1gxra_          45 INTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS  122 (337)
T ss_dssp             EEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE
T ss_pred             EEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccc
Confidence            4444 8999999999999999999997 89999999976532     223457888887665  8999999999999999


Q ss_pred             EEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe-
Q 009993          208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA-  283 (520)
Q Consensus       208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~-  283 (520)
                      +||+....           ......+..|...|.++++  ++.++++++.|+.|++||+.++++..... |...|.+++ 
T Consensus       123 iwd~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~  191 (337)
T d1gxra_         123 IWDLAAPT-----------PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI  191 (337)
T ss_dssp             EEECCCC-------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             cccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99986542           2244567789999999999  67899999999999999999998887776 888999887 


Q ss_pred             -eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeec
Q 009993          284 -PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI  361 (520)
Q Consensus       284 -~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~  361 (520)
                       +++..+++++ |+.+++||+++++.+..+.  |...|.+++|+|+++++++|+.||.+++||++...      . ....
T Consensus       192 s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~------~-~~~~  262 (337)
T d1gxra_         192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD------K-YQLH  262 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC------E-EEEC
T ss_pred             cccccccccccccccccccccccceeecccc--cccceEEEEEcccccccceeccccccccccccccc------c-cccc
Confidence             7888999888 9999999999999888774  88999999999999999999999999999998872      2 3556


Q ss_pred             CCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEec--CCEEE
Q 009993          362 PHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIV  437 (520)
Q Consensus       362 ~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~  437 (520)
                      .|...|++++|+|  ++|++|+.||.|++||+.++...                   .. ..|...|.++.++  +++|+
T Consensus       263 ~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~-------------------~~-~~~~~~v~~~~~s~d~~~l~  322 (337)
T d1gxra_         263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-------------------FQ-SKESSSVLSCDISVDDKYIV  322 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-------------------EE-EECSSCEEEEEECTTSCEEE
T ss_pred             ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEE-------------------EE-ccCCCCEEEEEEeCCCCEEE
Confidence            8999999999976  69999999999999999874211                   11 2345566666654  56999


Q ss_pred             EecCCCeEEEEeC
Q 009993          438 CGGEEGIVRIWNF  450 (520)
Q Consensus       438 sg~~Dg~v~iwd~  450 (520)
                      +|+.||+|+|||+
T Consensus       323 t~s~D~~I~vWdl  335 (337)
T d1gxra_         323 TGSGDKKATVYEV  335 (337)
T ss_dssp             EEETTSCEEEEEE
T ss_pred             EEeCCCeEEEEEE
Confidence            9999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.8e-37  Score=290.08  Aligned_cols=281  Identities=17%  Similarity=0.263  Sum_probs=239.0

Q ss_pred             hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009993          134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA  211 (520)
Q Consensus       134 ~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~  211 (520)
                      ..++|+||++.|++++|+|++++|+||+.||+|+|||+.+++.+..+..|...|.++.  |++.++++|+.|+.+.+|+.
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~  126 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEES
T ss_pred             eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccc
Confidence            3578999999999999999999999999999999999999999999999998888776  89999999999999999997


Q ss_pred             ccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCC
Q 009993          212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDT  287 (520)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~  287 (520)
                      ....         ........+.+|......... .+..+.....|.....++........... +...+....  +.+.
T Consensus       127 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (340)
T d1tbga_         127 KTRE---------GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR  197 (340)
T ss_dssp             SSSC---------SCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred             cccc---------cccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccc
Confidence            6653         122345567788887777776 77888999999999999988777666555 556666655  7788


Q ss_pred             EEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeee--eecCCc
Q 009993          288 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA--TWIPHT  364 (520)
Q Consensus       288 ~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~--~~~~h~  364 (520)
                      +++++. |+.|++||+++++.+..+. +|...|++++|+|++++|++|+.||.|++||++..      ....  ....+.
T Consensus       198 ~~~~~~~d~~v~i~d~~~~~~~~~~~-~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~------~~~~~~~~~~~~  270 (340)
T d1tbga_         198 LFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNII  270 (340)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------EEEEEECCTTCC
T ss_pred             eeEEeecCceEEEEECCCCcEEEEEe-CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc------cccccccccccc
Confidence            888888 9999999999999999887 69999999999999999999999999999999887      3333  345677


Q ss_pred             CCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC--CEEEEec
Q 009993          365 GPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGG  440 (520)
Q Consensus       365 ~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~  440 (520)
                      ..|++++|+|  ++|++|+.||.|++||+.++                   .....+.+|...|.++.+++  .+|+|||
T Consensus       271 ~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-------------------~~~~~~~~H~~~V~~l~~s~d~~~l~s~s  331 (340)
T d1tbga_         271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-------------------DRAGVLAGHDNRVSCLGVTDDGMAVATGS  331 (340)
T ss_dssp             SCEEEEEECSSSCEEEEEETTSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred             CceEEEEECCCCCEEEEEECCCEEEEEECCCC-------------------cEEEEEcCCCCCEEEEEEeCCCCEEEEEc
Confidence            7899999976  69999999999999999873                   34455678888888887755  4999999


Q ss_pred             CCCeEEEEe
Q 009993          441 EEGIVRIWN  449 (520)
Q Consensus       441 ~Dg~v~iwd  449 (520)
                      .||.|+|||
T Consensus       332 ~Dg~v~iWd  340 (340)
T d1tbga_         332 WDSFLKIWN  340 (340)
T ss_dssp             TTSCEEEEC
T ss_pred             cCCEEEEeC
Confidence            999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-37  Score=299.81  Aligned_cols=280  Identities=25%  Similarity=0.374  Sum_probs=229.9

Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC------------------CCceEEEE--ecCCCEEE
Q 009993          139 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP------------------LGCTIRAV--AADKKLLV  198 (520)
Q Consensus       139 ~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~------------------~~~~v~~~--~~~~~~l~  198 (520)
                      .+|++.|+||+|+|+|++|++|+ |++|+|||+.+++.+..+..                  |...|.++  ++++++|+
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            37999999999999999999987 89999999999988776643                  34446554  58999999


Q ss_pred             EEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeec
Q 009993          199 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHS  276 (520)
Q Consensus       199 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~  276 (520)
                      +|+.||.|++||..++.             ......+|...|.++.+  ++..+++++.++.+++||.++........+.
T Consensus       138 s~~~dg~v~i~~~~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  204 (388)
T d1erja_         138 TGAEDRLIRIWDIENRK-------------IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE  204 (388)
T ss_dssp             EEETTSCEEEEETTTTE-------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred             ecccccccccccccccc-------------cccccccccccccccccccccccccccccceeeeeeeccccccccccccc
Confidence            99999999999987653             45667789999999999  6689999999999999999999888877765


Q ss_pred             cCEEEEe---eCCCEEEEEc-CCeEEEEECCCCeeeEEee------cccccceEEEEecCCCCEEEEEeCCCeEEEEEcc
Q 009993          277 DWVYGLA---PHDTTVASTS-GSDVYIWDTNSGCLLTVVN------GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEII  346 (520)
Q Consensus       277 ~~v~~~~---~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~------~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~  346 (520)
                      ....++.   .++.++++++ |+.|++||..++.....+.      .+|...|++++|+|++.+|++|+.||.|++||++
T Consensus       205 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~  284 (388)
T d1erja_         205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ  284 (388)
T ss_dssp             SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEecc
Confidence            5555554   5788999988 9999999999988776654      2578899999999999999999999999999998


Q ss_pred             cCcccc------ceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCccc
Q 009993          347 NDCTEA------NVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRM  418 (520)
Q Consensus       347 ~~~~~~------~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (520)
                      +.....      ..........|...|++++|+|  ++|++|+.||.|++||++++                   .+...
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~-------------------~~~~~  345 (388)
T d1erja_         285 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-------------------NPLLM  345 (388)
T ss_dssp             --------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-------------------CEEEE
T ss_pred             CCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC-------------------cEEEE
Confidence            764321      1234556678999999999975  79999999999999999873                   34455


Q ss_pred             ccCcceeeEEEEe--------cCCEEEEecCCCeEEEEeCC
Q 009993          419 LHGFECNLLSVDI--------GADRIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       419 ~~~~~~~v~~~~~--------~~~~l~sg~~Dg~v~iwd~~  451 (520)
                      +.+|...|.++.+        ++.+|+||+.||+|+||+++
T Consensus       346 l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         346 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            6788888887764        44599999999999999985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-37  Score=292.41  Aligned_cols=317  Identities=19%  Similarity=0.279  Sum_probs=257.8

Q ss_pred             hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEccc
Q 009993          134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVE  213 (520)
Q Consensus       134 ~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~  213 (520)
                      ..++|+||++.|.+ +++++|++|+||+.||+|+|||+.+++++.++.+|...|.++...+++|++|+.|+.+++|+...
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~~   86 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET   86 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred             cCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceeccccccccccc
Confidence            46779999999865 36668999999999999999999999999999999999999997778999999999999999865


Q ss_pred             CcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEeeCCCEEEEE
Q 009993          214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAST  292 (520)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~  292 (520)
                      ..             .......+...+......+..++.+..|+++.+|+..+++....+. ..............++.+
T Consensus        87 ~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (342)
T d2ovrb2          87 GE-------------CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSG  153 (342)
T ss_dssp             TE-------------EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEE
T ss_pred             cc-------------ceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeee
Confidence            42             3334455667777777788999999999999999999998888777 334444445666666776


Q ss_pred             c-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEE
Q 009993          293 S-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLA  371 (520)
Q Consensus       293 ~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~  371 (520)
                      + ++.|++||.+....+..+. +|...+..+.+  ++.++++|+.||.|++||++..      ..+..+.+|...+.++.
T Consensus       154 ~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~------~~~~~~~~~~~~v~~~~  224 (342)
T d2ovrb2         154 AYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG------NCIHTLTGHQSLTSGME  224 (342)
T ss_dssp             ETTSCEEEEEGGGTEEEEEEC-CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC------CEEEEECCCCSCEEEEE
T ss_pred             cCCCeEEEeecccceeeEEEc-CcccccccccC--CCCEEEEEeCCCeEEEeecccc------eeeeEecccccceeEEe
Confidence            6 9999999999999888886 57776665554  7889999999999999999988      67888999999999999


Q ss_pred             ecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCC
Q 009993          372 FEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       372 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~  451 (520)
                      +++++|++|+.||.|++||+.......                .......|...+.++.++++++++|+.||+|++||++
T Consensus       225 ~~~~~l~s~s~d~~i~iwd~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         225 LKDNILVSGNADSTVKIWDIKTGQCLQ----------------TLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK  288 (342)
T ss_dssp             EETTEEEEEETTSCEEEEETTTCCEEE----------------EECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred             cCCCEEEEEcCCCEEEEEecccccccc----------------cccccceeeeceeecccCCCeeEEEcCCCEEEEEECC
Confidence            999999999999999999998742111                1112345777889999999999999999999999999


Q ss_pred             chHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccccc
Q 009993          452 QAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA  494 (520)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~  494 (520)
                      +++.+.+....     ........+..++|+|+|..+++++.+
T Consensus       289 tg~~i~~~~~~-----~~~~~~~~v~~v~~s~~~~~la~g~~d  326 (342)
T d2ovrb2         289 TGEFIRNLVTL-----ESGGSGGVVWRIRASNTKLVCAVGSRN  326 (342)
T ss_dssp             TCCEEEEEEEC-----TTGGGTCEEEEEEECSSEEEEEEECSS
T ss_pred             CCCEEEEEecc-----cCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence            88654432111     112234457899999999888887654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.6e-36  Score=283.59  Aligned_cols=280  Identities=13%  Similarity=0.128  Sum_probs=229.7

Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcce
Q 009993          140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPH  217 (520)
Q Consensus       140 ~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~  217 (520)
                      .+.+.+.+++++|+|+.|+.++ ++.|.+||+.++.....+.+|...|.++.  |++++|++|+.||+|++||+.++.. 
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~-   92 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH-   92 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC-
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccc-
Confidence            3445567889999999999886 66799999999999999999998888775  9999999999999999999977531 


Q ss_pred             eeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec--CCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCE-E
Q 009993          218 LFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW--DMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTT-V  289 (520)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~-l  289 (520)
                                .....+.+|.++|.+++|  +++++++++.  +..+++|++++++....+. |...|.++.  |++.+ +
T Consensus        93 ----------~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l  162 (311)
T d1nr0a1          93 ----------ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRI  162 (311)
T ss_dssp             ----------CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEE
T ss_pred             ----------ccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeee
Confidence                      233457789999999999  6788888876  4569999999998888776 888999887  66664 7


Q ss_pred             EEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccccee-eeeeecCCcCCE
Q 009993          290 ASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL-LVATWIPHTGPV  367 (520)
Q Consensus       290 ~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-~~~~~~~h~~~v  367 (520)
                      ++|+ |+.|++||+++++....+. +|...|+++.++|+++++++|+.||.|++||+.++....... ......+|.+.|
T Consensus       163 ~sgs~d~~i~i~d~~~~~~~~~~~-~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V  241 (311)
T d1nr0a1         163 ISGSDDNTVAIFEGPPFKFKSTFG-EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV  241 (311)
T ss_dssp             EEEETTSCEEEEETTTBEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCE
T ss_pred             cccccccccccccccccccccccc-cccccccccccCccccccccccccccccccccccccccccccccccccccccccc
Confidence            7777 8999999999999888886 699999999999999999999999999999998874321111 112234789999


Q ss_pred             EEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCccccc---CcceeeEEEEecCCEEEEecCC
Q 009993          368 NSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH---GFECNLLSVDIGADRIVCGGEE  442 (520)
Q Consensus       368 ~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~l~sg~~D  442 (520)
                      ++++|+|  ++|++|+.||.|+|||++++...                   +.+.   .....+.++.|+++.|++++.|
T Consensus       242 ~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~-------------------~~l~~~~~~~~~~~~~~~~~~~l~s~s~d  302 (311)
T d1nr0a1         242 FGLTWSPDGTKIASASADKTIKIWNVATLKVE-------------------KTIPVGTRIEDQQLGIIWTKQALVSISAN  302 (311)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEE-------------------EEEECCSSGGGCEEEEEECSSCEEEEETT
T ss_pred             cccccCCCCCEEEEEeCCCeEEEEECCCCcEE-------------------EEEECCCCccceEEEEEecCCEEEEEECC
Confidence            9999976  79999999999999999875221                   1122   2234567888999999999999


Q ss_pred             CeEEEEeCC
Q 009993          443 GIVRIWNFS  451 (520)
Q Consensus       443 g~v~iwd~~  451 (520)
                      |.|++||.+
T Consensus       303 G~i~~wd~d  311 (311)
T d1nr0a1         303 GFINFVNPE  311 (311)
T ss_dssp             CCEEEEETT
T ss_pred             CEEEEEeCC
Confidence            999999974

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.7e-36  Score=286.27  Aligned_cols=307  Identities=20%  Similarity=0.233  Sum_probs=233.0

Q ss_pred             hhhhccccccE-EEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcc
Q 009993          135 IDVLYGHTEAV-LTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAV  212 (520)
Q Consensus       135 ~~~l~~h~~~V-~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~  212 (520)
                      ..+|+||.+.| +|++|  ++++|+||+.||+|+|||+.+++.+.++.+|...|.++. ..+.+|++|+.||.|++|+..
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~   82 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK   82 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETT
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEeccccccccccc
Confidence            45799998875 66665  688999999999999999999999999999999999887 446799999999999999987


Q ss_pred             cCcceeeeccCCccccceEEeccCCC--CeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--------------
Q 009993          213 EVLPHLFDISGSEKQNTQFRLWEHEG--PITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--------------  274 (520)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--------------  274 (520)
                      ....             ......+..  ......+  ++..+++++.|++|++||+.+........              
T Consensus        83 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (355)
T d1nexb2          83 KGCC-------------THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE  149 (355)
T ss_dssp             TTEE-------------EEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTT
T ss_pred             cccc-------------ccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceecccc
Confidence            6531             222222222  2233333  55789999999999999998765432211              


Q ss_pred             ----------eccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993          275 ----------HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY  343 (520)
Q Consensus       275 ----------~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iw  343 (520)
                                |...+....+++++++.+. |+.|++||+++++.+.... ++...+.++.++|++.++++++.|+.|++|
T Consensus       150 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~  228 (355)
T d1nexb2         150 NPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIW  228 (355)
T ss_dssp             CTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             ccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeee-ccccccccccccccceeeecccccceEEee
Confidence                      3445666678889999988 9999999999999888876 588889999999999999999999999999


Q ss_pred             EcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcc
Q 009993          344 EIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE  423 (520)
Q Consensus       344 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (520)
                      |++++      ..+..+.+|...|+++++++++|++|+.||.|++||+++.....                  ..-....
T Consensus       229 d~~~~------~~~~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------------------~~~~~~~  284 (355)
T d1nexb2         229 DLENG------ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKF------------------SYHHTNL  284 (355)
T ss_dssp             ETTTC------CEEEEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTCCEEE------------------EEECTTC
T ss_pred             ecccc------ccccccccccccccccccccceeeeeecccccccccccccceec------------------ccccCCc
Confidence            99998      77888999999999999999999999999999999998742211                  0011122


Q ss_pred             eeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccc
Q 009993          424 CNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCS  492 (520)
Q Consensus       424 ~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s  492 (520)
                      ..+..+.+++.++++| .||.|++||+++++.+...         .......+..++|+|+. .+++++
T Consensus       285 ~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~---------~~~~~~~V~~v~~~~~~-~~~~~s  342 (355)
T d1nexb2         285 SAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHAN---------ILKDADQIWSVNFKGKT-LVAAVE  342 (355)
T ss_dssp             CCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSC---------TTTTCSEEEEEEEETTE-EEEEEE
T ss_pred             eEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEE---------ecCCCCCEEEEEEcCCe-EEEEEE
Confidence            3344556666666665 5899999999988654321         11223456788998763 444444

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.5e-36  Score=279.95  Aligned_cols=283  Identities=18%  Similarity=0.224  Sum_probs=216.4

Q ss_pred             hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC-CCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009993          134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRAVA--ADKKLLVAGGTDGFIHCWR  210 (520)
Q Consensus       134 ~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd  210 (520)
                      +.++++||.++|++++|+|++++|+||+.||+|++||+.+++.+..+. .|...|.++.  +++. +++++.|+.+++|+
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~   82 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVP   82 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEEC
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEec
Confidence            467899999999999999999999999999999999999999988875 6888887766  7776 56677899999999


Q ss_pred             cccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEE--EEeeCC
Q 009993          211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVY--GLAPHD  286 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~--~~~~~~  286 (520)
                      ......          .........+...+.++++  ++..+++ +.++.+++|+...  . ........+.  ++.+++
T Consensus        83 ~~~~~~----------~~~~~~~~~~~~~~~~~~~s~~g~~~~~-~~~~~i~~~~~~~--~-~~~~~~~~~~~~~~s~~~  148 (299)
T d1nr0a2          83 AGGSGV----------DSSKAVANKLSSQPLGLAVSADGDIAVA-ACYKHIAIYSHGK--L-TEVPISYNSSCVALSNDK  148 (299)
T ss_dssp             SSSSSS----------CTTSCCEEECSSCEEEEEECTTSSCEEE-EESSEEEEEETTE--E-EEEECSSCEEEEEECTTS
T ss_pred             cCCccc----------cccccccccccccccccccccccccccc-ccccccccccccc--c-cccccccccccccccccc
Confidence            765421          1112223457788899999  5555554 5567999999543  2 2223333344  445899


Q ss_pred             CEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcC
Q 009993          287 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG  365 (520)
Q Consensus       287 ~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  365 (520)
                      +++++++ |+.|++||+++++........|...|++++|+|++++|++++.|+.|++||+.++..   ......+.+|..
T Consensus       149 ~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~---~~~~~~~~~h~~  225 (299)
T d1nr0a2         149 QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE---LAHTNSWTFHTA  225 (299)
T ss_dssp             CEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE---ESCCCCCCCCSS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccc
Confidence            9999988 999999999988766544446899999999999999999999999999999987732   133456678999


Q ss_pred             CEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccC-cceeeEEEE-ecCCEEEEecC
Q 009993          366 PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG-FECNLLSVD-IGADRIVCGGE  441 (520)
Q Consensus       366 ~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~-~~~~~l~sg~~  441 (520)
                      +|++++|+|  .+|++|+.||.|++||+++....                 ....... +...+.++. +++.+|+||+.
T Consensus       226 ~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~-----------------~~~~~~~~~~~~v~~~~~~~~~~l~s~s~  288 (299)
T d1nr0a2         226 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH-----------------PIIIKGAHAMSSVNSVIWLNETTIVSAGQ  288 (299)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC-----------------CEEETTSSTTSCEEEEEEEETTEEEEEET
T ss_pred             ccccccccccccceEEEcCCCEEEEEECCCCCcc-----------------eEEEecCCCCCcEEEEEECCCCEEEEEeC
Confidence            999999976  69999999999999999874211                 1111122 333344433 45679999999


Q ss_pred             CCeEEEEeCC
Q 009993          442 EGIVRIWNFS  451 (520)
Q Consensus       442 Dg~v~iwd~~  451 (520)
                      ||+|++||+.
T Consensus       289 D~~i~iWdl~  298 (299)
T d1nr0a2         289 DSNIKFWNVP  298 (299)
T ss_dssp             TSCEEEEECC
T ss_pred             CCEEEEEecc
Confidence            9999999985

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-35  Score=274.61  Aligned_cols=281  Identities=17%  Similarity=0.273  Sum_probs=235.3

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccC
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEV  214 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~  214 (520)
                      ++.+.+|...|+|++|  ++++||||+.||+|+|||+.+++++.++.+|...|.++++++++|++|+.||.|++|++..+
T Consensus         8 i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~   85 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTG   85 (293)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSC
T ss_pred             EeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeecccccccccccccccc
Confidence            3456788999999765  79999999999999999999999999999999999999999999999999999999999776


Q ss_pred             cceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEe----eeccCEEEEeeCCCEEE
Q 009993          215 LPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVL----RHSDWVYGLAPHDTTVA  290 (520)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~l~  290 (520)
                      .             .......+.............++++..++.+.+||..+.......    .|...+..+.+....++
T Consensus        86 ~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  152 (293)
T d1p22a2          86 E-------------MLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV  152 (293)
T ss_dssp             C-------------EEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEE
T ss_pred             c-------------ccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccc
Confidence            3             223333444445555557788999999999999999876543332    27888888888888888


Q ss_pred             EEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEE
Q 009993          291 STS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNS  369 (520)
Q Consensus       291 ~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~  369 (520)
                      +++ |+.|++||+++++.+..+. ++...+..+.++  +..+++++.||.|++||+++.      ..+....+|...+..
T Consensus       153 ~~s~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~v~~  223 (293)
T d1p22a2         153 SASGDRTIKVWNTSTCEFVRTLN-GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG------ACLRVLEGHEELVRC  223 (293)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEE
T ss_pred             cccCCCceeeecCCCCcEEEEEc-ccccccccccCC--CCeEEEecCCCEEEEEecccc------eeeeeecccceeeee
Confidence            877 9999999999999998887 588888887775  578999999999999999988      678888899999999


Q ss_pred             EEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEe
Q 009993          370 LAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWN  449 (520)
Q Consensus       370 l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd  449 (520)
                      +..++.+|++|+.||.|++||+...........          ......+.+|...|.++++++.+|+|||.||+|+|||
T Consensus       224 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~----------~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         224 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG----------TLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTT----------TTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred             ccccceEEEEEcCCCEEEEEECCCCccccccCC----------ceeeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence            999999999999999999999987543322111          2234456789999999999999999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-35  Score=286.48  Aligned_cols=294  Identities=14%  Similarity=0.102  Sum_probs=223.6

Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCc--EEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcc
Q 009993          141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLP  216 (520)
Q Consensus       141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~  216 (520)
                      +.++|+|++|+|+|++||+|+.||.|+|||+.+++  .+..+.+|..+|.++.  |++++|++|+.|++|++||+.++. 
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~-   84 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT-   84 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE-
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc-
Confidence            35789999999999999999999999999998775  6677889999988775  899999999999999999997653 


Q ss_pred             eeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-----eccCEEEEe--eCCC
Q 009993          217 HLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-----HSDWVYGLA--PHDT  287 (520)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-----~~~~v~~~~--~~~~  287 (520)
                                ......+.+|...|.+++|  +++.+++|+.|++|++|++..........     |...|.++.  |+++
T Consensus        85 ----------~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  154 (371)
T d1k8kc_          85 ----------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV  154 (371)
T ss_dssp             ----------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS
T ss_pred             ----------cccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccccccccccc
Confidence                      2344566789999999999  77899999999999999987665433222     778899887  8899


Q ss_pred             EEEEEc-CCeEEEEECCCC------------------eeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993          288 TVASTS-GSDVYIWDTNSG------------------CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  348 (520)
Q Consensus       288 ~l~~~~-d~~i~iwd~~~~------------------~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~  348 (520)
                      +|++++ |+.|++||....                  ..+.... +|...|.+++|+|++++|++++.|+.|++||+..+
T Consensus       155 ~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~  233 (371)
T d1k8kc_         155 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK  233 (371)
T ss_dssp             EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             ceeccccCcEEEEEeeccCccccccccccccccccceeeeeecc-CccCcEEEEEeecccccccccccCCcceEEeeecc
Confidence            999998 999999998643                  2333333 68889999999999999999999999999999988


Q ss_pred             ccccceeeeeeecCCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcccccC--CC--CCCCcee--e------ee-----
Q 009993          349 CTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSG--RP--TSGKRVS--R------VI-----  410 (520)
Q Consensus       349 ~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~--~~--~~~~~~~--~------~~-----  410 (520)
                            ..+..+..|..+|++++|+| ..+++++.|+.+++|.........  ..  .......  .      +.     
T Consensus       234 ------~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (371)
T d1k8kc_         234 ------MAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK  307 (371)
T ss_dssp             ------TEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred             ------cceeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccce
Confidence                  67888889999999999965 455566678887777654321111  00  0000000  0      00     


Q ss_pred             -----ecCCCcccccCcceeeEEEEecC------CEEEEecCCCeEEEEeCCc
Q 009993          411 -----EVEPPQRMLHGFECNLLSVDIGA------DRIVCGGEEGIVRIWNFSQ  452 (520)
Q Consensus       411 -----~~~~~~~~~~~~~~~v~~~~~~~------~~l~sg~~Dg~v~iwd~~~  452 (520)
                           ...........|...|.++.+.+      ..|+|+|.||.|+|||+++
T Consensus       308 ~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         308 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             C---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             eEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                 00011111234777777766522      2699999999999999865

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.6e-35  Score=275.77  Aligned_cols=246  Identities=18%  Similarity=0.224  Sum_probs=210.3

Q ss_pred             cccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEE--EEeCCCCceEEEEe--cCCCEEEE
Q 009993          128 DKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI--ASSKPLGCTIRAVA--ADKKLLVA  199 (520)
Q Consensus       128 ~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~--~~~~~~~~~v~~~~--~~~~~l~s  199 (520)
                      ..+|+    ...+.+.+|.+.|++++|+|+|++|++|+.||+|+|||+.++...  ..+..|...|.++.  ++++++++
T Consensus        40 v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~  119 (311)
T d1nr0a1          40 VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAA  119 (311)
T ss_dssp             EEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEE
T ss_pred             EEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccc
Confidence            45564    456678999999999999999999999999999999999887643  55778888887765  88999999


Q ss_pred             EeCC--CcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCC-EEEEEecCCeEEEEECCCCcEEEEee
Q 009993          200 GGTD--GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLT-RIYSGSWDMTVRVWDRALLKCLKVLR  274 (520)
Q Consensus       200 g~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~  274 (520)
                      ++.+  ..+++|++.++.             ....+.+|...|++++|  +++ .+++|+.|+.|++||+++++....+.
T Consensus       120 ~~~~~~~~~~v~~~~~~~-------------~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~  186 (311)
T d1nr0a1         120 VGEGRERFGHVFLFDTGT-------------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG  186 (311)
T ss_dssp             EECCSSCSEEEEETTTCC-------------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC
T ss_pred             cccccccccccccccccc-------------ccccccccccccccccccccceeeecccccccccccccccccccccccc
Confidence            8864  569999997753             33456789999999999  444 58899999999999999999888886


Q ss_pred             -eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEee------cccccceEEEEecCCCCEEEEEeCCCeEEEEE
Q 009993          275 -HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVN------GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE  344 (520)
Q Consensus       275 -~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~------~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd  344 (520)
                       |...|.++.  |+++++++++ |+.|++||..++.....+.      .+|...|++++|+|++++|++|+.||.|+|||
T Consensus       187 ~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd  266 (311)
T d1nr0a1         187 EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN  266 (311)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEE
Confidence             889999988  7899999988 9999999999988877664      25788999999999999999999999999999


Q ss_pred             cccCccccceeeeeeecCCc---CCEEEEEecCCEEEEEeCCCcEEEEeCC
Q 009993          345 IINDCTEANVLLVATWIPHT---GPVNSLAFEFPWLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~~~~l~s~s~dg~i~vwd~~  392 (520)
                      ++++      +++.++..|.   ..+.++.|+++.|++++.||.|++||++
T Consensus       267 ~~t~------~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         267 VATL------KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             TTTT------EEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             CCCC------cEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            9988      6666666553   4677888999999999999999999974

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.6e-35  Score=270.91  Aligned_cols=266  Identities=12%  Similarity=0.153  Sum_probs=221.3

Q ss_pred             HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEc
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRA  211 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~  211 (520)
                      +++++|+||.++|++++|+|    |+||+.||+|++||+.++     ..+|...|.++. ..+..+++++.|++|++|++
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~   74 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGI   74 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTTCCEEEETTTEEEETTE
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCCeEEEEeeccccccccc
Confidence            45789999999999999987    999999999999998764     357888898887 55677899999999999987


Q ss_pred             ccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEeeCCCEEE
Q 009993          212 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVA  290 (520)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~  290 (520)
                      ...                    .....+.++.+ .+..++..+.++.+.+|+..+++.+..+.....+.++.+++..++
T Consensus        75 ~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (287)
T d1pgua2          75 TKH--------------------EFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVA  134 (287)
T ss_dssp             EEE--------------------ECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEE
T ss_pred             ccc--------------------ccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCccee
Confidence            432                    12345666777 445666666778899999999999999988888889999888888


Q ss_pred             EEc-C-CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEE
Q 009993          291 STS-G-SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN  368 (520)
Q Consensus       291 ~~~-d-~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~  368 (520)
                      +++ + +.+++|++........+...|...+++++|+|++.+|++|+.||.|++||+.++.     .....+.+|..+|+
T Consensus       135 v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~-----~~~~~~~~h~~~v~  209 (287)
T d1pgua2         135 VGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE-----VKTSRWAFRTSKIN  209 (287)
T ss_dssp             EEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEECCSCCCSSCEE
T ss_pred             eeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccc-----cccccccccccccc
Confidence            877 5 5799999988877777766788899999999999999999999999999998873     23345678999999


Q ss_pred             EEEecC------------CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-E
Q 009993          369 SLAFEF------------PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-R  435 (520)
Q Consensus       369 ~l~~~~------------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~  435 (520)
                      +++|+|            .+|++|+.|++|++||+++.                  ......+.+|...|.++.+.++ .
T Consensus       210 ~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~------------------~~~~~~~~~h~~~V~~v~~~~~~~  271 (287)
T d1pgua2         210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP------------------MKIIKALNAHKDGVNNLLWETPST  271 (287)
T ss_dssp             EEEECCCC------CCSCCEEEEEETTSCEEEEESSCT------------------TCCEEETTSSTTCEEEEEEEETTE
T ss_pred             eeeecccccccccccCCCCeeEeecCCCeEEEEECCCC------------------CeEEEEeCCCCCCeEEEEECCCCE
Confidence            999965            48999999999999999764                  3344556788888888887655 8


Q ss_pred             EEEecCCCeEEEEeC
Q 009993          436 IVCGGEEGIVRIWNF  450 (520)
Q Consensus       436 l~sg~~Dg~v~iwd~  450 (520)
                      |+|+|.||+|++|++
T Consensus       272 l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         272 LVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEETTSCEEEEEE
T ss_pred             EEEEECCCeEEEEEE
Confidence            999999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-34  Score=271.86  Aligned_cols=263  Identities=18%  Similarity=0.218  Sum_probs=223.1

Q ss_pred             hhhhhhcCCCCCCCCCCCCCCCcccHHH-------h--hhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCC--
Q 009993          106 EFYCERWGLPIASAPLGAGFSDDKSWKE-------L--IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG--  174 (520)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~-------~--~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~--  174 (520)
                      .+.|..|. |+..++...++...++|+-       .  .....+|.+.|.+++|+|++++|++|+.||+|++||+...  
T Consensus        53 ~V~~v~fs-~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~  131 (337)
T d1gxra_          53 VVCAVTIS-NPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP  131 (337)
T ss_dssp             CCCEEEEC-SSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--
T ss_pred             cEEEEEEC-CCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccc
Confidence            35778887 6666655545555688971       1  2234689999999999999999999999999999998754  


Q ss_pred             cEEEEeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEE
Q 009993          175 FSIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRI  250 (520)
Q Consensus       175 ~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l  250 (520)
                      +....+..|...+.++  ++++.++++++.|+.|++|++.++.             ......+|...|.+++|  ++..+
T Consensus       132 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~-------------~~~~~~~~~~~v~~l~~s~~~~~~  198 (337)
T d1gxra_         132 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-------------LVRQFQGHTDGASCIDISNDGTKL  198 (337)
T ss_dssp             EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-------------EEEEECCCSSCEEEEEECTTSSEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc-------------cccccccccccccccccccccccc
Confidence            4566677887777654  4899999999999999999987753             45567789999999999  67899


Q ss_pred             EEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCC
Q 009993          251 YSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT  327 (520)
Q Consensus       251 ~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~  327 (520)
                      ++++.|+.|++||+++++.+..+.+...|.++.  ++++.+++++ |+.+++||+++++.....  .|...|++++|+|+
T Consensus       199 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~i~~v~~s~~  276 (337)
T d1gxra_         199 WTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH--LHESCVLSLKFAYC  276 (337)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC--CCSSCEEEEEECTT
T ss_pred             ccccccccccccccccceeecccccccceEEEEEcccccccceecccccccccccccccccccc--ccccccceEEECCC
Confidence            999999999999999999999999999999987  7889999988 999999999998876554  59999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeC
Q 009993          328 GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDV  391 (520)
Q Consensus       328 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~  391 (520)
                      +++|++|+.||.|++||+.++      ..+..+ .|...|++++|+|  ++|++|+.||+|+|||+
T Consensus       277 g~~l~s~s~Dg~i~iwd~~~~------~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         277 GKWFVSTGKDNLLNAWRTPYG------ASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SSEEEEEETTSEEEEEETTTC------CEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCC------CEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            999999999999999999988      455444 5788999999976  69999999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.5e-32  Score=259.20  Aligned_cols=295  Identities=20%  Similarity=0.281  Sum_probs=225.1

Q ss_pred             CCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceE----EEEecCCC
Q 009993          124 GFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTI----RAVAADKK  195 (520)
Q Consensus       124 ~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v----~~~~~~~~  195 (520)
                      .+...++|+    +++++|++|.++|++++|+|+ .+|++|+.|++|++|+.................    ....+++.
T Consensus        31 ~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (355)
T d1nexb2          31 DDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK  109 (355)
T ss_dssp             TTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEE
T ss_pred             CCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccc
Confidence            345568998    568889999999999999985 589999999999999999988777665443322    22347888


Q ss_pred             EEEEEeCCCcEEEEEcccCcceee----------eccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECC
Q 009993          196 LLVAGGTDGFIHCWRAVEVLPHLF----------DISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRA  265 (520)
Q Consensus       196 ~l~sg~~dg~i~vwd~~~~~~~~~----------~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~  265 (520)
                      .+++++.|+.|++||+.+......          ................|...+.....+++.++++..|+.|++||+.
T Consensus       110 ~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~  189 (355)
T d1nexb2         110 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVA  189 (355)
T ss_dssp             EEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred             eeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecc
Confidence            999999999999999877542111          1111122233445567888888888899999999999999999999


Q ss_pred             CCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEE
Q 009993          266 LLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIH  341 (520)
Q Consensus       266 ~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~  341 (520)
                      +++.+.... +...+.++.  +++..+++++ |+.|++||.+++..+..+. +|...|.+++++  +++|++|+.||.|+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~~~~~dg~i~  266 (355)
T d1nexb2         190 QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-GHTALVGLLRLS--DKFLVSAAADGSIR  266 (355)
T ss_dssp             TTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCCCEEEEC--SSEEEEECTTSEEE
T ss_pred             cccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccc-cccccccccccc--cceeeeeecccccc
Confidence            999888776 556666554  7888999888 9999999999999998887 699999999986  47999999999999


Q ss_pred             EEEcccCccccceeeeeeecCCcCCEEEEEe---cCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCccc
Q 009993          342 MYEIINDCTEANVLLVATWIPHTGPVNSLAF---EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRM  418 (520)
Q Consensus       342 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (520)
                      +||+++..        ..+..|...+.++.+   ++.++++ +.||.|++||++++..                  ....
T Consensus       267 iwd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~-g~d~~i~vwd~~tg~~------------------~~~~  319 (355)
T d1nexb2         267 GWDANDYS--------RKFSYHHTNLSAITTFYVSDNILVS-GSENQFNIYNLRSGKL------------------VHAN  319 (355)
T ss_dssp             EEETTTCC--------EEEEEECTTCCCCCEEEECSSEEEE-EETTEEEEEETTTCCB------------------CCSC
T ss_pred             cccccccc--------eecccccCCceEEEEEcCCCCEEEE-EeCCEEEEEECCCCCE------------------EEEE
Confidence            99998772        223345555555443   3455555 4589999999988522                  2233


Q ss_pred             ccCcceeeEEEEecCC-EEEEecCCCeEEEEe
Q 009993          419 LHGFECNLLSVDIGAD-RIVCGGEEGIVRIWN  449 (520)
Q Consensus       419 ~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd  449 (520)
                      +.+|...|.++.++++ .+++++.||.++||.
T Consensus       320 ~~~~~~~V~~v~~~~~~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         320 ILKDADQIWSVNFKGKTLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             TTTTCSEEEEEEEETTEEEEEEESSSCEEEEE
T ss_pred             ecCCCCCEEEEEEcCCeEEEEEECCCcEEEEE
Confidence            5678889999999988 667788999876654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.2e-32  Score=263.83  Aligned_cols=266  Identities=20%  Similarity=0.273  Sum_probs=214.4

Q ss_pred             hhhhhhcCCCCCCCCCCCCCCCcccHHH----h------------------hhhhccccccEEEEEEccCCCEEEEEeCC
Q 009993          106 EFYCERWGLPIASAPLGAGFSDDKSWKE----L------------------IDVLYGHTEAVLTVFVLASAKLLFTSGYD  163 (520)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~----~------------------~~~l~~h~~~V~~l~~~~~~~~l~sgs~d  163 (520)
                      .+.|..|+ |+..++...++...++|+.    +                  .....+|...|++++|+|++++|++|+.|
T Consensus        64 ~V~~l~fs-~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~d  142 (388)
T d1erja_          64 VVCCVKFS-NDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAED  142 (388)
T ss_dssp             CCCEEEEC-TTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETT
T ss_pred             cEEEEEEC-CCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccc
Confidence            46788888 6666655444556688871    1                  22345788899999999999999999999


Q ss_pred             CeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeE
Q 009993          164 SIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPIT  241 (520)
Q Consensus       164 g~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  241 (520)
                      |.|++||..+++.+..+.+|...|.++.  +++..+++|+.++.+++||..+..             ...... +.....
T Consensus       143 g~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-------------~~~~~~-~~~~~~  208 (388)
T d1erja_         143 RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-------------CSLTLS-IEDGVT  208 (388)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-------------EEEEEE-CSSCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccceeeeeeeccccc-------------cccccc-cccccc
Confidence            9999999999999999999999888776  888999999999999999987652             222333 344455


Q ss_pred             EEEE---cCCEEEEEecCCeEEEEECCCCcEEEEee--------eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCee
Q 009993          242 SLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR--------HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCL  307 (520)
Q Consensus       242 ~l~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--------~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~  307 (520)
                      ++.+   ++++|++|+.||.|++||..++.....+.        |...|.++.  +++++|++++ |+.|++||++++..
T Consensus       209 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~  288 (388)
T d1erja_         209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN  288 (388)
T ss_dssp             EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----
T ss_pred             cccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcc
Confidence            5555   67899999999999999999998877653        677898887  7899999998 99999999986543


Q ss_pred             e------------EEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEec--
Q 009993          308 L------------TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--  373 (520)
Q Consensus       308 ~------------~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--  373 (520)
                      .            ... ..|...|.+++|+|++++|++|+.||.|++||++++      .++.++.+|.+.|+++++.  
T Consensus       289 ~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~------~~~~~l~~H~~~V~~~~~~~~  361 (388)
T d1erja_         289 KSDSKTPNSGTCEVTY-IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG------NPLLMLQGHRNSVISVAVANG  361 (388)
T ss_dssp             ----------CEEEEE-ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEECSS
T ss_pred             ccccccccccceeeec-ccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC------cEEEEEeCCCCCEEEEEEecC
Confidence            2            222 257889999999999999999999999999999998      7888999999999999873  


Q ss_pred             ----C--CEEEEEeCCCcEEEEeCCc
Q 009993          374 ----F--PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       374 ----~--~~l~s~s~dg~i~vwd~~~  393 (520)
                          |  .+|++|+.||+|+||+++.
T Consensus       362 ~~~spd~~~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         362 SSLGPEYNVFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             CTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             cccCCCCCEEEEEeCCCEEEEEeeee
Confidence                2  5899999999999999863

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-31  Score=249.38  Aligned_cols=295  Identities=21%  Similarity=0.378  Sum_probs=239.9

Q ss_pred             CCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEE
Q 009993          123 AGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLV  198 (520)
Q Consensus       123 ~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~  198 (520)
                      +.+...++|+    ++++++.+|.+.|++++|+|+  +|++|+.|+++++|+............+...+.........++
T Consensus        34 s~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (342)
T d2ovrb2          34 SDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV  111 (342)
T ss_dssp             ETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEE
T ss_pred             eCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeeccccccc
Confidence            3455568998    567889999999999999864  9999999999999999998888888888888888888888999


Q ss_pred             EEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEee-ecc
Q 009993          199 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSD  277 (520)
Q Consensus       199 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~  277 (520)
                      .+..|+.+.+|+..++.             ....+..+.............+++++.|+.|++||....+.+..+. |..
T Consensus       112 ~~~~d~~i~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~  178 (342)
T d2ovrb2         112 SGSRDATLRVWDIETGQ-------------CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN  178 (342)
T ss_dssp             EEETTSEEEEEESSSCC-------------EEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSS
T ss_pred             ccccceeEEEeeccccc-------------ceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccc
Confidence            99999999999987763             2333444445555555577889999999999999999999888876 888


Q ss_pred             CEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceee
Q 009993          278 WVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL  356 (520)
Q Consensus       278 ~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~  356 (520)
                      .+..+.+++..+++++ |+.|++||++.++.+..+. +|...+.+++++  +++|++|+.||.|++||+......   ..
T Consensus       179 ~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~---~~  252 (342)
T d2ovrb2         179 RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT-GHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCL---QT  252 (342)
T ss_dssp             CEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEEC-CCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEE---EE
T ss_pred             ccccccCCCCEEEEEeCCCeEEEeecccceeeeEec-ccccceeEEecC--CCEEEEEcCCCEEEEEeccccccc---cc
Confidence            8888889999999999 9999999999999988887 688899888875  469999999999999999887321   22


Q ss_pred             eeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--
Q 009993          357 VATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--  434 (520)
Q Consensus       357 ~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--  434 (520)
                      +.....|...+.++.++++++++|+.||.|++||++++....         .+..     ....+|...|.+++++++  
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~---------~~~~-----~~~~~~~~~v~~v~~s~~~~  318 (342)
T d2ovrb2         253 LQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR---------NLVT-----LESGGSGGVVWRIRASNTKL  318 (342)
T ss_dssp             ECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE---------EEEE-----CTTGGGTCEEEEEEECSSEE
T ss_pred             ccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEE---------EEec-----ccCCCCCCCEEEEEECCCCC
Confidence            333345778999999999999999999999999998753211         1110     112457777888887766  


Q ss_pred             EEEEecCCCe----EEEEeCCc
Q 009993          435 RIVCGGEEGI----VRIWNFSQ  452 (520)
Q Consensus       435 ~l~sg~~Dg~----v~iwd~~~  452 (520)
                      +|++|+.||+    |++||+..
T Consensus       319 ~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         319 VCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEEEeCCCCCeeEEEEEeCCC
Confidence            8999999985    99999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.2e-32  Score=252.99  Aligned_cols=269  Identities=23%  Similarity=0.330  Sum_probs=231.8

Q ss_pred             cCcchhhhhhhhhcCCCCCCCCC-CCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 009993           99 SDHHAWKEFYCERWGLPIASAPL-GAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED  173 (520)
Q Consensus        99 ~~~~lW~~~~~~~~~~~~~~~~~-~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~  173 (520)
                      +.|.  ..+.|..|. |...+++ ++.+...++|+    +++.++++|.+.|.+++|+|++.++++++.++.+.+|+...
T Consensus        14 ~GH~--~~I~~l~~s-p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (317)
T d1vyhc1          14 SGHR--SPVTRVIFH-PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG   90 (317)
T ss_dssp             ECCS--SCEEEEEEC-SSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred             cCCC--CCeEEEEEc-CCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccc
Confidence            3444  456777887 5555433 33456679997    66788999999999999999999999999999999999999


Q ss_pred             CcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCE
Q 009993          174 GFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTR  249 (520)
Q Consensus       174 ~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~  249 (520)
                      ......+..|...+.++.  +++..+++++.|+.+++||+.++.             ....+.+|...+.++++  ++.+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~  157 (317)
T d1vyhc1          91 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-------------CVKTFTGHREWVRMVRPNQDGTL  157 (317)
T ss_dssp             SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-------------EEEEEECCSSCEEEEEECTTSSE
T ss_pred             cccccccccccccceeeeccCCCceEEeeccCcceeEeecccce-------------eeeEEccCCCcceeeecccCCCE
Confidence            988888888887776654  899999999999999999997753             45667789999999999  6789


Q ss_pred             EEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--e--------------------CCCEEEEEc-CCeEEEEECCCC
Q 009993          250 IYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--P--------------------HDTTVASTS-GSDVYIWDTNSG  305 (520)
Q Consensus       250 l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~--------------------~~~~l~~~~-d~~i~iwd~~~~  305 (520)
                      +++++.|+.|++|+..+++....+. +...+.++.  +                    .+..+++++ |+.|++||++++
T Consensus       158 l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  237 (317)
T d1vyhc1         158 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG  237 (317)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT
T ss_pred             EEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC
Confidence            9999999999999999999888876 677777665  2                    245677777 999999999999


Q ss_pred             eeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCC
Q 009993          306 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD  383 (520)
Q Consensus       306 ~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d  383 (520)
                      +++..+. +|...|.+++++|++++|++|+.||.|++||+.++      .++.++.+|.++|++++|+|  ++|++|+.|
T Consensus       238 ~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~D  310 (317)
T d1vyhc1         238 MCLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK------RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD  310 (317)
T ss_dssp             EEEEEEE-CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS------CCCEEEECCSSCEEEEEECSSSSCEEEEETT
T ss_pred             cEEEEEe-CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCC------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence            9999987 69999999999999999999999999999999988      67888999999999999976  699999999


Q ss_pred             CcEEEEe
Q 009993          384 GKLSLID  390 (520)
Q Consensus       384 g~i~vwd  390 (520)
                      |+|+|||
T Consensus       311 g~i~iWd  317 (317)
T d1vyhc1         311 QTVKVWE  317 (317)
T ss_dssp             SEEEEEC
T ss_pred             CeEEEeC
Confidence            9999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=3.4e-31  Score=255.25  Aligned_cols=276  Identities=15%  Similarity=0.156  Sum_probs=211.9

Q ss_pred             hhhhhcCCCCCCCCC-CCCCCCcccHH------HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEE--
Q 009993          107 FYCERWGLPIASAPL-GAGFSDDKSWK------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI--  177 (520)
Q Consensus       107 ~~~~~~~~~~~~~~~-~~~~~~~~~W~------~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~--  177 (520)
                      +.|..|+ |+....+ .+.....++|+      ..+..|++|.++|++++|+|++++|++|+.|++|+|||+.++...  
T Consensus        10 It~~~~s-~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~   88 (371)
T d1k8kc_          10 ISCHAWN-KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT   88 (371)
T ss_dssp             CCEEEEC-TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred             eEEEEEC-CCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccc
Confidence            4577777 5555443 33445678898      257778999999999999999999999999999999999877543  


Q ss_pred             EEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEE
Q 009993          178 ASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG  253 (520)
Q Consensus       178 ~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~  253 (520)
                      ..+.+|...|.++.  |+++.|++|+.|+.|++|++......         .........|...|.+++|  ++.+|++|
T Consensus        89 ~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~---------~~~~~~~~~~~~~v~~v~~~p~~~~l~s~  159 (371)
T d1k8kc_          89 LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW---------WVCKHIKKPIRSTVLSLDWHPNSVLLAAG  159 (371)
T ss_dssp             EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE---------EEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred             cccccccccccccccccccccceeecccCcceeeeeeccccc---------ccccccccccccccccccccccccceecc
Confidence            44567777777665  89999999999999999998765321         1223445678999999999  67899999


Q ss_pred             ecCCeEEEEECCCCc------------------EEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEe
Q 009993          254 SWDMTVRVWDRALLK------------------CLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVV  311 (520)
Q Consensus       254 s~dg~v~iwd~~~~~------------------~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~  311 (520)
                      +.|++|++||.....                  .+.... |...|.+++  |+++.+++++ |+.|++||+.+++.+..+
T Consensus       160 s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~  239 (371)
T d1k8kc_         160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL  239 (371)
T ss_dssp             ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred             ccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeee
Confidence            999999999976432                  333333 778888877  8899999988 999999999999999888


Q ss_pred             ecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccce-----------------------------------ee
Q 009993          312 NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV-----------------------------------LL  356 (520)
Q Consensus       312 ~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~-----------------------------------~~  356 (520)
                      . .|..+|.+++|+|++.+|++|+ |+.+++|...........                                   ..
T Consensus       240 ~-~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (371)
T d1k8kc_         240 A-SETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG  317 (371)
T ss_dssp             E-CSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------
T ss_pred             e-cccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEecccccc
Confidence            7 5899999999999998887664 777777665432110000                                   00


Q ss_pred             eeeecCCcCCEEEEEecC------CEEEEEeCCCcEEEEeCCcc
Q 009993          357 VATWIPHTGPVNSLAFEF------PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       357 ~~~~~~h~~~v~~l~~~~------~~l~s~s~dg~i~vwd~~~~  394 (520)
                      ......|.+.|+++++.+      ..|+|++.||.|++||+++.
T Consensus       318 ~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~  361 (371)
T d1k8kc_         318 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  361 (371)
T ss_dssp             CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             ceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence            011124888999999832      46999999999999999764

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=4.7e-30  Score=242.37  Aligned_cols=279  Identities=14%  Similarity=0.114  Sum_probs=207.5

Q ss_pred             cEEEEEEccCCCEEEEEeCCC-eEEEEECCCC--cEEEEeCCCC-ceEEEEe--c--CCCEEEEEeCCCcEEEEEcccCc
Q 009993          144 AVLTVFVLASAKLLFTSGYDS-IVRMWHLEDG--FSIASSKPLG-CTIRAVA--A--DKKLLVAGGTDGFIHCWRAVEVL  215 (520)
Q Consensus       144 ~V~~l~~~~~~~~l~sgs~dg-~v~vwd~~~~--~~~~~~~~~~-~~v~~~~--~--~~~~l~sg~~dg~i~vwd~~~~~  215 (520)
                      .+++++|+|+++.|+.++.+. .|+.|+....  ..+..+.+|. ..|.++.  |  ++.+|++|+.||+|++||+..+.
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            357889999999999887654 3566765443  4466777774 4566554  4  56799999999999999987653


Q ss_pred             ceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec--CCeEEEEECCCCcEEEEee-eccCEEEEe--eCCC-
Q 009993          216 PHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW--DMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDT-  287 (520)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~-  287 (520)
                      ....     ........+..|.++|.+++|  ++.++++++.  ++.+++|+.++++++..+. |...|.++.  +++. 
T Consensus        99 ~~~~-----~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  173 (325)
T d1pgua1          99 ESNS-----VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM  173 (325)
T ss_dssp             GGTE-----EEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSC
T ss_pred             ceee-----eecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccc
Confidence            2100     001122345678999999999  6788777654  6789999999999998887 899999887  5554 


Q ss_pred             EEEEEc-CCeEEEEECCCCeeeEEeec--ccccceEEEEecCC-CCEEEEEeCCCeEEEEEcccCccccceeeeeeecCC
Q 009993          288 TVASTS-GSDVYIWDTNSGCLLTVVNG--AHVGNTKSLARSHT-GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH  363 (520)
Q Consensus       288 ~l~~~~-d~~i~iwd~~~~~~~~~~~~--~~~~~i~~l~~s~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h  363 (520)
                      .+++++ |+.+++||...++....+..  +|...|++++|+|+ +.++++|+.||.|++||++++      ..+..+.+|
T Consensus       174 ~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~------~~~~~l~~~  247 (325)
T d1pgua1         174 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG------EFLKYIEDD  247 (325)
T ss_dssp             EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC------CEEEECCBT
T ss_pred             eEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccc------ccccccccc
Confidence            466666 99999999998877666542  56788999999996 688999999999999999988      677888888


Q ss_pred             cCCEE----EEEec-CCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCc--ceeeEEEEecCC-E
Q 009993          364 TGPVN----SLAFE-FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF--ECNLLSVDIGAD-R  435 (520)
Q Consensus       364 ~~~v~----~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~-~  435 (520)
                      ..++.    ++.+. +.+|++++.|+.|+|||++++......                 ..+++  .....++.+.++ +
T Consensus       248 ~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~  310 (325)
T d1pgua1         248 QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW-----------------TLDKQQLGNQQVGVVATGNGR  310 (325)
T ss_dssp             TBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEE-----------------ECCTTCGGGCEEEEEEEETTE
T ss_pred             ccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEE-----------------EecCCcccCeEEEEEECCCCE
Confidence            77654    44443 479999999999999999874321110                 01222  233445555554 8


Q ss_pred             EEEecCCCeEEEEeC
Q 009993          436 IVCGGEEGIVRIWNF  450 (520)
Q Consensus       436 l~sg~~Dg~v~iwd~  450 (520)
                      |++||.||.|++||+
T Consensus       311 l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         311 IISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEETTSCEEEEET
T ss_pred             EEEEECCCEEEEEEC
Confidence            999999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=7.4e-30  Score=241.80  Aligned_cols=272  Identities=17%  Similarity=0.242  Sum_probs=225.4

Q ss_pred             hhcCcchhhhhhhhhcCCCCCCCCC-CCCCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEEC
Q 009993           97 LASDHHAWKEFYCERWGLPIASAPL-GAGFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHL  171 (520)
Q Consensus        97 ~~~~~~lW~~~~~~~~~~~~~~~~~-~~~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~  171 (520)
                      .+..|.  ..+.|..|. |+...++ ++.+...++|+    +.+..+.+|.+.|++++|+|+++++++|+.|+.+++|+.
T Consensus        50 tL~GH~--~~I~~l~~s-~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~  126 (340)
T d1tbga_          50 TLRGHL--AKIYAMHWG-TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             EECCCS--SCEEEEEEC-TTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEES
T ss_pred             EECCCC--CCEEEEEEC-CCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccc
Confidence            345565  557788887 5554433 33355679998    556788999999999999999999999999999999998


Q ss_pred             CCC----cEEEEeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-
Q 009993          172 EDG----FSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-  245 (520)
Q Consensus       172 ~~~----~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-  245 (520)
                      ...    .....+.+|........ ..+..+..+..|.....+.....             ........+...+....+ 
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~  193 (340)
T d1tbga_         127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG-------------QQTTTFTGHTGDVMSLSLA  193 (340)
T ss_dssp             SSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTT-------------EEEEEEECCSSCEEEEEEC
T ss_pred             cccccccccceecccccccccccccccccccccccccccccccccccc-------------cccccccccceeEeeeccc
Confidence            654    34556677776665554 66778888899999988887553             234445567778888887 


Q ss_pred             -cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEee-cccccce
Q 009993          246 -DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVN-GAHVGNT  319 (520)
Q Consensus       246 -~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~-~~~~~~i  319 (520)
                       .+.++++|+.|+.|++||+++++++..+. |...|++++  |+++++++++ |+.|++||++....+..+. ..+...+
T Consensus       194 ~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i  273 (340)
T d1tbga_         194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI  273 (340)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred             cccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCce
Confidence             66889999999999999999999999887 899999887  7899999998 9999999999998877664 3456789


Q ss_pred             EEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEe
Q 009993          320 KSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLID  390 (520)
Q Consensus       320 ~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd  390 (520)
                      .+++|+|++++|++|+.||.|++||+.++      .++..+.+|.++|++++|+|  .+|++|+.||.|+|||
T Consensus       274 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~------~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         274 TSVSFSKSGRLLLAGYDDFNCNVWDALKA------DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEECSSSCEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEECCCCCEEEEEECCCEEEEEECCCC------cEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            99999999999999999999999999988      78889999999999999976  5999999999999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.3e-30  Score=235.32  Aligned_cols=276  Identities=22%  Similarity=0.302  Sum_probs=215.8

Q ss_pred             EEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEec
Q 009993          176 SIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSW  255 (520)
Q Consensus       176 ~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~  255 (520)
                      .+.....|...|.|+++++++|++|+.||+|++||+.++.             ....+.+|.+.|++++|++++|++|+.
T Consensus         7 ~i~~~~~~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~-------------~~~~l~~H~~~V~~v~~~~~~l~s~s~   73 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLE-------------CKRILTGHTGSVLCLQYDERVIITGSS   73 (293)
T ss_dssp             CEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCC-------------EEEEECCCSSCEEEEECCSSEEEEEET
T ss_pred             EEeccCCCCCCEEEEEEcCCEEEEEeCCCeEEEEECCCCc-------------EEEEEecCCCCEeeeecccceeecccc
Confidence            3445567888999999999999999999999999997753             566788999999999999999999999


Q ss_pred             CCeEEEEECCCCcEEEEee-eccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEE--eecccccceEEEEecCCCCEE
Q 009993          256 DMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTV--VNGAHVGNTKSLARSHTGDFL  331 (520)
Q Consensus       256 dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l  331 (520)
                      |++|++|++..+....... ..............++++. ++.+.+||.........  ....|...+..+.+.  ...+
T Consensus        74 D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~  151 (293)
T d1p22a2          74 DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYI  151 (293)
T ss_dssp             TSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEE
T ss_pred             cccccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--cccc
Confidence            9999999999998877776 4444555556666666666 89999999987653222  223577888877775  4678


Q ss_pred             EEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeee
Q 009993          332 FTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE  411 (520)
Q Consensus       332 ~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  411 (520)
                      ++++.|+.|++||+++.      ..+..+.+|...+..+.+++.++++++.||.|++||+++.                 
T Consensus       152 ~~~s~d~~i~~~d~~~~------~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~-----------------  208 (293)
T d1p22a2         152 VSASGDRTIKVWNTSTC------EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG-----------------  208 (293)
T ss_dssp             EEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTC-----------------
T ss_pred             ccccCCCceeeecCCCC------cEEEEEcccccccccccCCCCeEEEecCCCEEEEEecccc-----------------
Confidence            89999999999999988      6788889999999999999999999999999999999873                 


Q ss_pred             cCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccccc
Q 009993          412 VEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQC  491 (520)
Q Consensus       412 ~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~  491 (520)
                        .......++...+..+.+++.+|++|+.||.|++||+............. .......+...+..++|  ||..++++
T Consensus       209 --~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~H~~~V~~v~~--d~~~l~s~  283 (293)
T d1p22a2         209 --ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL-CLRTLVEHSGRVFRLQF--DEFQIVSS  283 (293)
T ss_dssp             --CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTT-EEEEECCCSSCCCCEEE--CSSCEEEC
T ss_pred             --eeeeeecccceeeeeccccceEEEEEcCCCEEEEEECCCCccccccCCce-eeEEecCCCCCEEEEEE--cCCEEEEE
Confidence              33344566777888889999999999999999999987654433211111 11111223344566666  67788887


Q ss_pred             ccc
Q 009993          492 SVA  494 (520)
Q Consensus       492 s~~  494 (520)
                      +.+
T Consensus       284 s~D  286 (293)
T d1p22a2         284 SHD  286 (293)
T ss_dssp             CSS
T ss_pred             ecC
Confidence            753

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.2e-30  Score=243.73  Aligned_cols=287  Identities=11%  Similarity=0.084  Sum_probs=207.3

Q ss_pred             hhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEE---EEeCCCCceEEEEe--cC-CCEEEEEeCCCcEE
Q 009993          134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI---ASSKPLGCTIRAVA--AD-KKLLVAGGTDGFIH  207 (520)
Q Consensus       134 ~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~---~~~~~~~~~v~~~~--~~-~~~l~sg~~dg~i~  207 (520)
                      +++.+++|++.|++|+|+|++++|++|+.||+|+|||+.++...   ....+|..+|.++.  ++ +.+|++|+.||.|+
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            46678999999999999999999999999999999999766432   33346888888765  54 56899999999999


Q ss_pred             EEEcccCcceeeeccCCccccceEEeccCCCCe-EEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee---------e
Q 009993          208 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPI-TSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---------H  275 (520)
Q Consensus       208 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---------~  275 (520)
                      +|++.....             ......+...+ ....+  ++..+++++.|+++++||++++.......         .
T Consensus        83 ~w~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~  149 (342)
T d1yfqa_          83 KVDLIGSPS-------------FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKV  149 (342)
T ss_dssp             EECSSSSSS-------------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSS
T ss_pred             eeecccccc-------------cccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccc
Confidence            999876532             22222232222 22222  77899999999999999987543322221         2


Q ss_pred             ccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEe--ecccccceEEEEec-CCCCEEEEEeCCCeEEEEEcccCccc
Q 009993          276 SDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVV--NGAHVGNTKSLARS-HTGDFLFTGGEDGAIHMYEIINDCTE  351 (520)
Q Consensus       276 ~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~--~~~~~~~i~~l~~s-~~~~~l~tg~~dg~i~iwd~~~~~~~  351 (520)
                      ......+.+.+..+++++ |+.|++||+.........  ...+...+.+..+. +++..+++++.||.+.+|++......
T Consensus       150 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~  229 (342)
T d1yfqa_         150 KNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD  229 (342)
T ss_dssp             CCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCS
T ss_pred             eeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcce
Confidence            233455668888888888 999999999876543222  22344455555554 46789999999999999998765322


Q ss_pred             ccee---------eeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCccccc
Q 009993          352 ANVL---------LVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH  420 (520)
Q Consensus       352 ~~~~---------~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (520)
                      ....         ......+|...|++++|+|  ++|++|+.||.|++||+.+.....                  ....
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~------------------~~~~  291 (342)
T d1yfqa_         230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK------------------NFAK  291 (342)
T ss_dssp             TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE------------------ECCC
T ss_pred             eeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEE------------------EecC
Confidence            1111         1122345777899999987  799999999999999998752211                  1123


Q ss_pred             CcceeeEEEEecCCEEEEecCCCeEEEEeCC
Q 009993          421 GFECNLLSVDIGADRIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       421 ~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~  451 (520)
                      .+...+.+++++++.+++|+.|+.+++|...
T Consensus       292 ~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         292 FNEDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             CSSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             CCCCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence            4667889999999999999999988888654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1.6e-28  Score=228.85  Aligned_cols=273  Identities=17%  Similarity=0.200  Sum_probs=199.8

Q ss_pred             CcEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEe-ccCCCCeEEEEEc-CCE
Q 009993          174 GFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL-WEHEGPITSLALD-LTR  249 (520)
Q Consensus       174 ~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~-~~~  249 (520)
                      |...+.+.+|...|.+++  |++++|++|+.||+|++||+.++.             ....+ .+|...|++++|. ...
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~-------------~~~~~~~~h~~~v~~v~~~~~g~   68 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI-------------SNRVFPDVHATMITGIKTTSKGD   68 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------------EEECSSCSCSSCEEEEEECTTSC
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCc-------------EEEEEcCCCCCcEEEEEeeccce
Confidence            566788999999998876  899999999999999999998763             22222 4689999999993 345


Q ss_pred             EEEEecCCeEEEEECCCCcEE----EEeeeccCEEEEe--eCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEE
Q 009993          250 IYSGSWDMTVRVWDRALLKCL----KVLRHSDWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLA  323 (520)
Q Consensus       250 l~s~s~dg~v~iwd~~~~~~~----~~~~~~~~v~~~~--~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~  323 (520)
                      +++++.|+.+++|+.......    ....+...+.++.  +++..++++.++.+.+|+....  . ...  ....+.+++
T Consensus        69 ~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~--~-~~~--~~~~~~~~~  143 (299)
T d1nr0a2          69 LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL--T-EVP--ISYNSSCVA  143 (299)
T ss_dssp             EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE--E-EEE--CSSCEEEEE
T ss_pred             eecccceeeEEEeccCCccccccccccccccccccccccccccccccccccccccccccccc--c-ccc--ccccccccc
Confidence            778888999999998654321    1122556666665  7888888888999999996432  2 222  345678999


Q ss_pred             ecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCC
Q 009993          324 RSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPT  401 (520)
Q Consensus       324 ~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~  401 (520)
                      |+|++++|++|+.||.|++||+++...     .......|...|++++|+|  .+|++++.|+.|++||+.+.....   
T Consensus       144 ~s~~~~~l~~g~~dg~i~~~d~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~---  215 (299)
T d1nr0a2         144 LSNDKQFVAVGGQDSKVHVYKLSGASV-----SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA---  215 (299)
T ss_dssp             ECTTSCEEEEEETTSEEEEEEEETTEE-----EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES---
T ss_pred             ccccccccccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccccccccccccc---
Confidence            999999999999999999999987731     2223457889999999976  699999999999999998743221   


Q ss_pred             CCCceeeeeecCCCcccccCcceeeEEEEec--CCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhcccee
Q 009993          402 SGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQT  479 (520)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (520)
                                   ....+.+|...|.++.++  +.+|++|+.||.|++||+.++.....        .............
T Consensus       216 -------------~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~--------~~~~~~~~~~v~~  274 (299)
T d1nr0a2         216 -------------HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI--------IIKGAHAMSSVNS  274 (299)
T ss_dssp             -------------CCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCE--------EETTSSTTSCEEE
T ss_pred             -------------ccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceE--------EEecCCCCCcEEE
Confidence                         122345677777776654  55999999999999999987643211        0111111223344


Q ss_pred             eeccCCCccccccc
Q 009993          480 EMSSKGGRTDQCSV  493 (520)
Q Consensus       480 ~~s~~g~~~~~~s~  493 (520)
                      .++++|+.+++++.
T Consensus       275 ~~~~~~~~l~s~s~  288 (299)
T d1nr0a2         275 VIWLNETTIVSAGQ  288 (299)
T ss_dssp             EEEEETTEEEEEET
T ss_pred             EEECCCCEEEEEeC
Confidence            56678888888764

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1e-28  Score=233.13  Aligned_cols=237  Identities=16%  Similarity=0.169  Sum_probs=187.7

Q ss_pred             hhhhccc-cccEEEEEEcc--CCCEEEEEeCCCeEEEEECCCCcEE--------EEeCCCCceEEEEe--cCCCEEEEEe
Q 009993          135 IDVLYGH-TEAVLTVFVLA--SAKLLFTSGYDSIVRMWHLEDGFSI--------ASSKPLGCTIRAVA--ADKKLLVAGG  201 (520)
Q Consensus       135 ~~~l~~h-~~~V~~l~~~~--~~~~l~sgs~dg~v~vwd~~~~~~~--------~~~~~~~~~v~~~~--~~~~~l~sg~  201 (520)
                      +..+.+| ...|++++|+|  ++.+|++|+.||+|+|||+..+...        ..+..|..+|.++.  +++.++++++
T Consensus        55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  134 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG  134 (325)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceee
Confidence            4456777 46899999998  5789999999999999998765322        23456777776665  8899888776


Q ss_pred             C--CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cC-CEEEEEecCCeEEEEECCCCcEEEEee--
Q 009993          202 T--DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DL-TRIYSGSWDMTVRVWDRALLKCLKVLR--  274 (520)
Q Consensus       202 ~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~--  274 (520)
                      .  ++.+.+|+..++.             ....+.+|...|.+++|  ++ ..+++++.|+.+++||..+.+....+.  
T Consensus       135 ~~~~~~~~~~~~~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~  201 (325)
T d1pgua1         135 EGRDNFGVFISWDSGN-------------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH  201 (325)
T ss_dssp             CCSSCSEEEEETTTCC-------------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSS
T ss_pred             ccccceEEEEeecccc-------------cceeeeecccccccccccccccceEEEeecccccccccccccccceecccc
Confidence            4  6789999987653             45667789999999999  33 458899999999999999887776654  


Q ss_pred             --eccCEEEEe--eC-CCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEec---CCCCEEEEEeCCCeEEEEEc
Q 009993          275 --HSDWVYGLA--PH-DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARS---HTGDFLFTGGEDGAIHMYEI  345 (520)
Q Consensus       275 --~~~~v~~~~--~~-~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s---~~~~~l~tg~~dg~i~iwd~  345 (520)
                        +...|.+++  |+ +.++++++ |+.|++||+++++.+..+. +|..++..+.|+   |++++|++++.|+.|+|||+
T Consensus       202 ~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~-~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~  280 (325)
T d1pgua1         202 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE-DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV  280 (325)
T ss_dssp             SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC-BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEET
T ss_pred             cCCCCccEEeeeccccceeccccccccceeeeeecccccccccc-ccccccccceeeeeccCCCEEEEEeCCCeEEEEEC
Confidence              677788887  54 67888887 9999999999999999887 577766555554   68999999999999999999


Q ss_pred             ccCccccceeeeeeecCCcCC--E--EEEEecC-CEEEEEeCCCcEEEEeC
Q 009993          346 INDCTEANVLLVATWIPHTGP--V--NSLAFEF-PWLVSAAGDGKLSLIDV  391 (520)
Q Consensus       346 ~~~~~~~~~~~~~~~~~h~~~--v--~~l~~~~-~~l~s~s~dg~i~vwd~  391 (520)
                      +++      +++..+..|...  +  .++.+.+ .+|++|+.||.|++||+
T Consensus       281 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         281 TTS------KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TTT------EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CCC------CEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            988      566666555443  2  3445544 69999999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.2e-28  Score=239.31  Aligned_cols=256  Identities=16%  Similarity=0.104  Sum_probs=177.4

Q ss_pred             hhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcE------EEEeCCCCceEE------EEe---cCCCEEEEE
Q 009993          136 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS------IASSKPLGCTIR------AVA---ADKKLLVAG  200 (520)
Q Consensus       136 ~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~------~~~~~~~~~~v~------~~~---~~~~~l~sg  200 (520)
                      ...++|.+.|++++++  +++++|||.|++|+|||..+...      ......|...+.      ...   .+...++++
T Consensus         8 ~~~~~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           8 NAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             EESSCSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            4568999999999986  57999999999999999865532      122223332221      222   233578899


Q ss_pred             eCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--c-----CCEEEEEecCCeEEEEECCCCc-----
Q 009993          201 GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D-----LTRIYSGSWDMTVRVWDRALLK-----  268 (520)
Q Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~-----~~~l~s~s~dg~v~iwd~~~~~-----  268 (520)
                      +.||.|++|++............   .........+...+..+++  +     +.++++++.||++++||+....     
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             eCCCcEEEEEccCCCceeeeecc---ccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence            99999999998655321100000   0000111234556667766  2     3678999999999999974221     


Q ss_pred             ----------EEEEee----eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEee-----cccccceEEEEecC
Q 009993          269 ----------CLKVLR----HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVN-----GAHVGNTKSLARSH  326 (520)
Q Consensus       269 ----------~~~~~~----~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~-----~~~~~~i~~l~~s~  326 (520)
                                ......    +...+++++  +++ ++++|+ |++|++||+.+++++..+.     .+|..+|++++|+|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  241 (393)
T d1sq9a_         163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP  241 (393)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred             eeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc
Confidence                      111111    344566666  554 888888 9999999999998877654     25889999999999


Q ss_pred             CCCEEEEEeCCCe---EEEEEcccCccccce-------eeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcc
Q 009993          327 TGDFLFTGGEDGA---IHMYEIINDCTEANV-------LLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       327 ~~~~l~tg~~dg~---i~iwd~~~~~~~~~~-------~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  394 (520)
                      +|++|++|+.|++   |++||+.++......       .....+.+|.+.|++++|+|  ++|++|+.|++|+|||+.++
T Consensus       242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK  321 (393)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC
Confidence            9999999999874   999999887432111       12233458999999999976  69999999999999999986


Q ss_pred             ccc
Q 009993          395 LRS  397 (520)
Q Consensus       395 ~~~  397 (520)
                      ...
T Consensus       322 ~~~  324 (393)
T d1sq9a_         322 ERI  324 (393)
T ss_dssp             EEE
T ss_pred             CEE
Confidence            443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.5e-28  Score=235.09  Aligned_cols=296  Identities=14%  Similarity=0.193  Sum_probs=197.7

Q ss_pred             EEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE---------cCC
Q 009993          178 ASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---------DLT  248 (520)
Q Consensus       178 ~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---------~~~  248 (520)
                      ...++|...|.+++..++++++|+.|++|++||..+....       ...........|...+..+..         +..
T Consensus         8 ~~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNE-------NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC   80 (393)
T ss_dssp             EESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTC-------CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred             ecCCcccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCC-------cccceeEeeeeccCCceEeeeEeeeccCCCCCc
Confidence            3457999999999988999999999999999997665321       112223334455555444333         224


Q ss_pred             EEEEEecCCeEEEEECCCCcEEEEe-----e------eccCEEEEe--e-----CCCEEEEEc-CCeEEEEECCCCee--
Q 009993          249 RIYSGSWDMTVRVWDRALLKCLKVL-----R------HSDWVYGLA--P-----HDTTVASTS-GSDVYIWDTNSGCL--  307 (520)
Q Consensus       249 ~l~s~s~dg~v~iwd~~~~~~~~~~-----~------~~~~v~~~~--~-----~~~~l~~~~-d~~i~iwd~~~~~~--  307 (520)
                      .+++++.||.|++|++........+     .      +...+..+.  +     .+.++++++ |+.+++||+.....  
T Consensus        81 ~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~  160 (393)
T d1sq9a_          81 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES  160 (393)
T ss_dssp             EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred             EEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccc
Confidence            6789999999999997643221111     1      333444443  2     246777777 99999999753210  


Q ss_pred             -------------eEEe--ecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe
Q 009993          308 -------------LTVV--NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF  372 (520)
Q Consensus       308 -------------~~~~--~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~  372 (520)
                                   ....  ...+...+++++|+|++ +|++|+.||+|++||+.++...........+.+|..+|++++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~  239 (393)
T d1sq9a_         161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF  239 (393)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred             ceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccc
Confidence                         0111  12345568899999987 8999999999999999988655444555667889999999999


Q ss_pred             cC--CEEEEEeCCCc---EEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecC--CEEEEecCCCeE
Q 009993          373 EF--PWLVSAAGDGK---LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGIV  445 (520)
Q Consensus       373 ~~--~~l~s~s~dg~---i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~v  445 (520)
                      +|  ++|++|+.|++   |++||+.++..........      ........+.+|...|+++.|++  ++|+|||.||+|
T Consensus       240 spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~------~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v  313 (393)
T d1sq9a_         240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT------HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL  313 (393)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             ccccceeeeecCCCCcceeeecccccceeeeeecccc------ccccceeeeecccCceeeeccCCCCCeeEEECCCCEE
Confidence            76  69999999875   8999998754332211110      11233445678998888888765  599999999999


Q ss_pred             EEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccccccc
Q 009993          446 RIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSV  493 (520)
Q Consensus       446 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~  493 (520)
                      +|||+++++.+..+...      ..........++|+|+|..+++.++
T Consensus       314 ~vWd~~~g~~~~~l~gH------~~~v~~~~~~~~~~~~~~~~~~~~~  355 (393)
T d1sq9a_         314 RFWDVKTKERITTLNMH------CDDIEIEEDILAVDEHGDSLAEPGV  355 (393)
T ss_dssp             EEEETTTTEEEEEEECC------GGGCSSGGGCCCBCTTSCBCSSCCE
T ss_pred             EEEECCCCCEEEEECCc------CCcccCCccEEEECCCCCEEEEccc
Confidence            99999998765443211      1112233456889999998876553

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=8.6e-26  Score=212.93  Aligned_cols=292  Identities=10%  Similarity=0.055  Sum_probs=200.8

Q ss_pred             cEEEEeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--c-CCE
Q 009993          175 FSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D-LTR  249 (520)
Q Consensus       175 ~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~-~~~  249 (520)
                      +.+...++|...|.++.  |++++|++|+.||+|++||+.++..          ........+|.++|.+++|  + +.+
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~----------~~~~~~~~~h~~~V~~v~f~~~~~~~   71 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK----------NVDLLQSLRYKHPLLCCNFIDNTDLQ   71 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT----------EEEEEEEEECSSCEEEEEEEESSSEE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCc----------ceEEEEecCCCCCEEEEEEeCCCCCE
Confidence            34556678988888765  8999999999999999999976532          1233344579999999999  2 357


Q ss_pred             EEEEecCCeEEEEECCCCcEEEEee-e-ccC--EEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEee---cc--cccce
Q 009993          250 IYSGSWDMTVRVWDRALLKCLKVLR-H-SDW--VYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVN---GA--HVGNT  319 (520)
Q Consensus       250 l~s~s~dg~v~iwd~~~~~~~~~~~-~-~~~--v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~---~~--~~~~i  319 (520)
                      |++|+.||+|++|+........... + ...  .....+++..+++++ ++.+++||++.+.......   ..  .....
T Consensus        72 l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~  151 (342)
T d1yfqa_          72 IYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKN  151 (342)
T ss_dssp             EEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCC
T ss_pred             EEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeeccccccccccee
Confidence            9999999999999999887776665 2 222  222337788888887 9999999987654332221   11  12234


Q ss_pred             EEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEec---CCEEEEEeCCCcEEEEeCCcccc
Q 009993          320 KSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE---FPWLVSAAGDGKLSLIDVRKLLR  396 (520)
Q Consensus       320 ~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~  396 (520)
                      ..+.+.+.+..+++++.|+.|++||++......   .......+...+.+..+.   +..+++++.||.+.+|++.....
T Consensus       152 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~  228 (342)
T d1yfqa_         152 KIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN---GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD  228 (342)
T ss_dssp             CEEEEEECSSEEEEEESTTEEEEEESSCCTTCC---CEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC
T ss_pred             eeeeeeccCCceeeecCCCcEEEEecccCcccc---eeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcc
Confidence            556677888999999999999999998774322   222334455566666664   37999999999999999886543


Q ss_pred             cCCCCCCCceeeeeecCCCcccccCcceeeEEEEe--cCCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhh
Q 009993          397 SGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRR  474 (520)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  474 (520)
                      ..........    ..........+|...+.++.+  ++.+|+||+.||.|++||+.+++.+.+....           .
T Consensus       229 ~~~~~~~~~~----~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-----------~  293 (342)
T d1yfqa_         229 DYNSSKRFAF----RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-----------N  293 (342)
T ss_dssp             STTCTTCEEE----ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-----------S
T ss_pred             eeecccccee----eeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-----------C
Confidence            3322211111    111112223455555655555  5569999999999999999987654322110           1


Q ss_pred             ccceeeeccCCCcccccccc
Q 009993          475 RKLQTEMSSKGGRTDQCSVA  494 (520)
Q Consensus       475 ~~~~~~~s~~g~~~~~~s~~  494 (520)
                      ....++|+|+|..+++++.+
T Consensus       294 ~~~~~~~s~~~~~l~~a~sd  313 (342)
T d1yfqa_         294 EDSVVKIACSDNILCLATSD  313 (342)
T ss_dssp             SSEEEEEEECSSEEEEEEEC
T ss_pred             CCEEEEEEeCCCEEEEEEcC
Confidence            23568899999999887654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=7.4e-26  Score=209.23  Aligned_cols=256  Identities=15%  Similarity=0.132  Sum_probs=194.6

Q ss_pred             hhhhhhhcCCCCCCCCCCCCCCCcccHHHhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCC
Q 009993          105 KEFYCERWGLPIASAPLGAGFSDDKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG  184 (520)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~  184 (520)
                      +.+.|..|+ |   +..++.+...++|+. ....++|+..|.++++++++ .+++++.|++|++|++...+     ..+.
T Consensus        14 ~~I~~l~~s-~---l~sgs~Dg~v~~Wd~-~~~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~-----~~~~   82 (287)
T d1pgua2          14 KGITALTVN-P---LISGSYDGRIMEWSS-SSMHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE-----FGSQ   82 (287)
T ss_dssp             SCEEEEETT-T---TEEEETTSCEEETTT-TEEECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE-----CSSC
T ss_pred             CceEEEEEC-c---EEEEeCCCeEEEEEC-CCCCCCCCCCEEEEEecCCC-eEEEEeeccccccccccccc-----cccc
Confidence            345566665 2   444455666689984 33467999999999998754 58999999999999975422     1223


Q ss_pred             ceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCC-eEEEEE
Q 009993          185 CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDM-TVRVWD  263 (520)
Q Consensus       185 ~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg-~v~iwd  263 (520)
                      ....++.+++..+++ +.++.+.+|+..++.             ....+ .+...+.++..+++.+++++.|+ .+++|+
T Consensus        83 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------------~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~  147 (287)
T d1pgua2          83 PKVASANNDGFTAVL-TNDDDLLILQSFTGD-------------IIKSV-RLNSPGSAVSLSQNYVAVGLEEGNTIQVFK  147 (287)
T ss_dssp             EEEEEECSSSEEEEE-ETTSEEEEEETTTCC-------------EEEEE-ECSSCEEEEEECSSEEEEEETTTSCEEEEE
T ss_pred             eeeeeeccCCceEEE-eecccceeeecccee-------------eeeec-cccceeeeeeccCcceeeeccccceeeeee
Confidence            334444566655555 456678889876653             22222 34566778888888888888765 799999


Q ss_pred             CCCCcEEEEee--eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCC----------C
Q 009993          264 RALLKCLKVLR--HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT----------G  328 (520)
Q Consensus       264 ~~~~~~~~~~~--~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~----------~  328 (520)
                      +...+....+.  +...+.+++  +++.+|++++ |+.|++||+.++........+|...|.+++|+|.          +
T Consensus       148 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~  227 (287)
T d1pgua2         148 LSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE  227 (287)
T ss_dssp             TTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSC
T ss_pred             ccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCC
Confidence            98776666554  677888876  8899999998 9999999999998776655579999999999874          4


Q ss_pred             CEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-CEEEEEeCCCcEEEEeC
Q 009993          329 DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDV  391 (520)
Q Consensus       329 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~  391 (520)
                      .++++|+.|++|++||++.+.     ..+..+.+|...|+++.|+| ..|++++.||.|++|++
T Consensus       228 ~~l~sgs~D~~i~iw~~~~~~-----~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         228 DLVATGSLDTNIFIYSVKRPM-----KIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             CEEEEEETTSCEEEEESSCTT-----CCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             CeeEeecCCCeEEEEECCCCC-----eEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence            689999999999999997753     46777889999999999965 58999999999999986

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.92  E-value=6.1e-24  Score=202.50  Aligned_cols=267  Identities=10%  Similarity=0.042  Sum_probs=194.4

Q ss_pred             EEEEcc-CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEE--ecCCCEEEEEeCCC--cEEEEEcccCcceeeec
Q 009993          147 TVFVLA-SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGTDG--FIHCWRAVEVLPHLFDI  221 (520)
Q Consensus       147 ~l~~~~-~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg--~i~vwd~~~~~~~~~~~  221 (520)
                      .-.||| ||+++|+++ +|.|++||+.++..+..  +|...|.++  +|||+.|++++.+.  .|++||..++       
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~-------   76 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG-------   76 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC-------
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC-------
Confidence            457999 999999987 57999999998877654  466666655  59999998776553  7999998776       


Q ss_pred             cCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-eccCEEEE--eeCCCEEEEEc---
Q 009993          222 SGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGL--APHDTTVASTS---  293 (520)
Q Consensus       222 ~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~---  293 (520)
                             ....+..|...|.+++|  ++++|++++.++.+++|+..+++....+. +...+.++  ++++++|+.+.   
T Consensus        77 -------~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~  149 (360)
T d1k32a3          77 -------KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLK  149 (360)
T ss_dssp             -------CEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEEC
T ss_pred             -------cEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeecccc
Confidence                   34566789999999999  78999999999999999999999888877 55555544  48999988653   


Q ss_pred             --------CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccc----e-------
Q 009993          294 --------GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN----V-------  354 (520)
Q Consensus       294 --------d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~----~-------  354 (520)
                              ++.+++||+.+++.....  .+...+..++|+|+|++|++++.|+.+.+|+.........    .       
T Consensus       150 ~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  227 (360)
T d1k32a3         150 HGETDGYVMQAIHVYDMEGRKIFAAT--TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIP  227 (360)
T ss_dssp             SSTTCSCCEEEEEEEETTTTEEEECS--CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESST
T ss_pred             ccceeeccccceeeeccccCceeeec--ccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEeccc
Confidence                    245899999998776554  3677888999999999999999999999998644311000    0       


Q ss_pred             --------------------------eeeeeecCCcCCEEEEEecC---------------CEEEEEeCCCcEEEEeCCc
Q 009993          355 --------------------------LLVATWIPHTGPVNSLAFEF---------------PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       355 --------------------------~~~~~~~~h~~~v~~l~~~~---------------~~l~s~s~dg~i~vwd~~~  393 (520)
                                                ..+..+....+....+...+               .++++++.++.|++||+.+
T Consensus       228 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  307 (360)
T d1k32a3         228 GSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT  307 (360)
T ss_dssp             TCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTT
T ss_pred             CccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCC
Confidence                                      00000111112222232211               2456777789999999876


Q ss_pred             ccccCCCCCCCceeeeeecCCCcccccCcce--eeEEEEecCCEEEEecCCCeEEEEeCCchHh
Q 009993          394 LLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC--NLLSVDIGADRIVCGGEEGIVRIWNFSQAFE  455 (520)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~  455 (520)
                      ...                       ..|..  ...++++|+++|++++.||.|++||++.+..
T Consensus       308 ~~~-----------------------~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         308 RKV-----------------------TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED  348 (360)
T ss_dssp             CCE-----------------------EEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTS
T ss_pred             CeE-----------------------EEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCc
Confidence            311                       11222  3345666777999999999999999998754

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=2e-21  Score=189.57  Aligned_cols=319  Identities=13%  Similarity=0.034  Sum_probs=199.1

Q ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeCCCC-ceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEE
Q 009993          154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR  232 (520)
Q Consensus       154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  232 (520)
                      .-++++.+.||+|.|||..+++.+..+..+. ..-.+++|||+++++++.||.|.+||+.++.....        ..+..
T Consensus        32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~--------~~i~~  103 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV--------AEIKI  103 (432)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE--------EEEEC
T ss_pred             cEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEE--------EEEec
Confidence            3346899999999999999999999997654 34456779999999999999999999987642110        11122


Q ss_pred             eccCCCCeEEEEE--cCCEE-EEEecCCeEEEEECCCCcEEEEee------------eccCEEEE--eeCCCEEEEE-c-
Q 009993          233 LWEHEGPITSLAL--DLTRI-YSGSWDMTVRVWDRALLKCLKVLR------------HSDWVYGL--APHDTTVAST-S-  293 (520)
Q Consensus       233 ~~~h~~~v~~l~~--~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~------------~~~~v~~~--~~~~~~l~~~-~-  293 (520)
                      ..+|.+.+.+..|  ||++| ++++.+++|++||..+++.+..+.            +......+  ++++..++.+ . 
T Consensus       104 ~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~  183 (432)
T d1qksa2         104 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE  183 (432)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc
Confidence            2345555555555  78875 778889999999999999888764            12233333  3677766554 4 


Q ss_pred             CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC-CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEe
Q 009993          294 GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF  372 (520)
Q Consensus       294 d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~  372 (520)
                      ++.|.+||..+++........+...+..++|+|+|+++++++. ++.+.++|..+....... .......|........+
T Consensus       184 ~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~-~~g~~~~~~~~~~~~~~  262 (432)
T d1qksa2         184 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE-DTGGQTPHPGRGANFVH  262 (432)
T ss_dssp             TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE-ECSSSSBCCTTCEEEEE
T ss_pred             CCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEe-ccCccccccCcccceec
Confidence            6899999999877554433345667899999999998777665 567899998877321110 01111123333333333


Q ss_pred             cC--CEEEEE-eCCCcEEEEeCCcccccCCCCCCCceeeeeecC---------CC-c-----ccccCcc--eeeEEEEec
Q 009993          373 EF--PWLVSA-AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVE---------PP-Q-----RMLHGFE--CNLLSVDIG  432 (520)
Q Consensus       373 ~~--~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---------~~-~-----~~~~~~~--~~v~~~~~~  432 (520)
                      ..  ...++. ..|+.|.+|+.........  ..+-...+....         +. .     .....|.  ....++ ++
T Consensus       263 ~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~--~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pD  339 (432)
T d1qksa2         263 PTFGPVWATSHMGDDSVALIGTDPEGHPDN--AWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FD  339 (432)
T ss_dssp             TTTEEEEEEEBSSSSEEEEEECCTTTCTTT--BTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EE
T ss_pred             CCCCceecccccCCceEEeccccccccccc--ccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-Ee
Confidence            32  223333 2477788887654321110  000000000000         00 0     0011111  112233 78


Q ss_pred             CCEEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCccccccccccc
Q 009993          433 ADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKK  497 (520)
Q Consensus       433 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~~~~  497 (520)
                      +..+++++.|+.+++|++.++..+.             ...++...++|||||+++..+..+.+.
T Consensus       340 g~~la~~s~d~~~k~w~~~~~~~l~-------------~~~~~v~~~~fS~DG~~v~~S~~~~~~  391 (432)
T d1qksa2         340 IKAMTGDGSDPEFKTLPIAEWAGIT-------------EGQPRVVQGEFNKDGTEVWFSVWNGKD  391 (432)
T ss_dssp             GGGCCCSSSCCCEEEECHHHHHTCC-------------SSCCEEEEEEECTTSSEEEEEEECCTT
T ss_pred             chhhcccccCCceEecccccccccC-------------CCCCcEEEeEECCCCCEEEEEEecCCC
Confidence            8899999999999999875442211             122346789999999999877665544

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=1.7e-21  Score=190.43  Aligned_cols=312  Identities=13%  Similarity=0.032  Sum_probs=198.4

Q ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCc-eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEE
Q 009993          154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC-TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR  232 (520)
Q Consensus       154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  232 (520)
                      +-++++++.||+|+|||+.+++.+.++..+.. .-.+++|||+++++++.||+|++||+.++.....        ..+..
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~--------~~i~~  103 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV--------AEIKI  103 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE--------EEEEC
T ss_pred             eEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEE--------EEEeC
Confidence            34568888999999999999999999986643 3356779999999999999999999988752110        01112


Q ss_pred             eccCCCCeEEEEE--cCCEE-EEEecCCeEEEEECCCCcEEEEee-ec-----------cCEEEEe--eCCCEEEEEc--
Q 009993          233 LWEHEGPITSLAL--DLTRI-YSGSWDMTVRVWDRALLKCLKVLR-HS-----------DWVYGLA--PHDTTVASTS--  293 (520)
Q Consensus       233 ~~~h~~~v~~l~~--~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~-~~-----------~~v~~~~--~~~~~l~~~~--  293 (520)
                      ..+|.+.+.+++|  ||+++ +++..++++++||..++++...+. +.           .....+.  +++..++...  
T Consensus       104 ~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~  183 (426)
T d1hzua2         104 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE  183 (426)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC
Confidence            2345555666666  78876 455689999999999998887765 21           1222222  5555555544  


Q ss_pred             CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC-CCeEEEEEcccCccccceeeeeeecC--CcCCEEEE
Q 009993          294 GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDCTEANVLLVATWIP--HTGPVNSL  370 (520)
Q Consensus       294 d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~--h~~~v~~l  370 (520)
                      .+.+.+++............++...+..+.|+|++++++++.. +..+.+++..+.      ..+.....  +..+....
T Consensus       184 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  257 (426)
T d1hzua2         184 TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR------RLSALVDVGKTPHPGRGA  257 (426)
T ss_dssp             TTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTT------EEEEEEECSSCCCCSCCE
T ss_pred             CCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccc------cEEEEeccCCccccccee
Confidence            3566666666654333322347778999999999998877654 567899999888      33333321  22222223


Q ss_pred             Ee--cC---CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEE--ecCCEEE------
Q 009993          371 AF--EF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD--IGADRIV------  437 (520)
Q Consensus       371 ~~--~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~------  437 (520)
                      .+  ..   -..++.+.|+.+.+|+.........  .          ......+.+|...+..+.  |++.+|+      
T Consensus       258 ~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~--~----------~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~  325 (426)
T d1hzua2         258 NFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY--A----------WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFN  325 (426)
T ss_dssp             EEEETTTEEEEEEECTTTCEEEEEECCTTTCTTT--B----------TSEEEEEECSSSCCCCEECCTTCSEEEECCTTC
T ss_pred             eeecCCCCceEEeccCCCceEEEeeccccccccc--c----------ceEeEEEecCCCceeEEEcCCCCceEEEeecCC
Confidence            33  22   1333445688999998765321110  0          122334566666555444  5555888      


Q ss_pred             -EecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccc
Q 009993          438 -CGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCS  492 (520)
Q Consensus       438 -sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s  492 (520)
                       +++.|++|+|||+.++..+.+....... .......++...++|||||+++..+.
T Consensus       326 ~s~~~~~tv~vwd~~t~~~~~~~~~~~~~-~~~~~~~~rv~~~~fSpDGk~i~vs~  380 (426)
T d1hzua2         326 PDARISQSVAVFDLKNLDAKYQVLPIAEW-ADLGEGAKRVVQPEYNKRGDEVWFSV  380 (426)
T ss_dssp             SSHHHHTCEEEEETTCTTSCCEEECHHHH-HCCCSSCCCEEEEEECSSSSEEEEEE
T ss_pred             CCcccCCEEEEEECCCCCcCeEEeccchh-cccCCCCccEEEEEECCCCCEEEEEE
Confidence             4667899999999988754332111110 01112234577889999999886543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.88  E-value=5.6e-21  Score=181.65  Aligned_cols=284  Identities=12%  Similarity=0.053  Sum_probs=196.9

Q ss_pred             eEEEEec-CCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCC--eEE
Q 009993          186 TIRAVAA-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM--TVR  260 (520)
Q Consensus       186 ~v~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg--~v~  260 (520)
                      ....++| ||+++++++. |.|++||+.++.              ...+ +|...|.+++|  |+++|++++.+.  .|+
T Consensus         6 ~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~--------------~~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~   69 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVSR-GQAFIQDVSGTY--------------VLKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLG   69 (360)
T ss_dssp             GEEEEEECGGGCEEEEET-TEEEEECTTSSB--------------EEEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEE
T ss_pred             hcccccCCCCCEEEEEEC-CeEEEEECCCCc--------------EEEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEE
Confidence            3467898 9999998874 799999987652              2233 69999999999  778888777654  799


Q ss_pred             EEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEe--
Q 009993          261 VWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG--  335 (520)
Q Consensus       261 iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~--  335 (520)
                      +||.++++......|...|.++.  |+++++++++ ++.+++|++.+++....+. .|...+.+++|+|+|++|+.++  
T Consensus        70 v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~la~~~~~  148 (360)
T d1k32a3          70 IYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-SREAMITDFTISDNSRFIAYGFPL  148 (360)
T ss_dssp             EEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCCEEECTTSCEEEEEEEE
T ss_pred             EEECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeee-cccccccchhhccceeeeeeeccc
Confidence            99999998887777889888876  8999999998 8999999999999888776 5888999999999999998643  


Q ss_pred             --------CCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCC--
Q 009993          336 --------EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSG--  403 (520)
Q Consensus       336 --------~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--  403 (520)
                              .++.+++||+.++      .. ..+..|...+..+.|+|  ++|++++.|+.+.+||.............  
T Consensus       149 ~~~~~~~~~~~~~~v~d~~~~------~~-~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~  221 (360)
T d1k32a3         149 KHGETDGYVMQAIHVYDMEGR------KI-FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPF  221 (360)
T ss_dssp             CSSTTCSCCEEEEEEEETTTT------EE-EECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEE
T ss_pred             cccceeeccccceeeeccccC------ce-eeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceE
Confidence                    3556999999887      33 33445677788888965  79999999999999997653221110000  


Q ss_pred             ---------Cc---------e-----------eeeeecC---CCcccccCcceeeEEEEec--CC---EEEEecCCCeEE
Q 009993          404 ---------KR---------V-----------SRVIEVE---PPQRMLHGFECNLLSVDIG--AD---RIVCGGEEGIVR  446 (520)
Q Consensus       404 ---------~~---------~-----------~~~~~~~---~~~~~~~~~~~~v~~~~~~--~~---~l~sg~~Dg~v~  446 (520)
                               ..         .           ..+..+.   .....+..+...+..+...  +.   ++++++.++.|+
T Consensus       222 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  301 (360)
T d1k32a3         222 VIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLL  301 (360)
T ss_dssp             EEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEE
T ss_pred             EEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEE
Confidence                     00         0           0000000   0000111111122222221  11   577888899999


Q ss_pred             EEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccccccccCCCCCCcceeeecccCCC
Q 009993          447 IWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMS  515 (520)
Q Consensus       447 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  515 (520)
                      +||+.+++..              .....+..++|||||+++++++.+.        ...+|...++..
T Consensus       302 ~~d~~~~~~~--------------~~~~~v~~~~~SpDG~~l~~~~~Dg--------~i~v~d~~~~~~  348 (360)
T d1k32a3         302 KYDVKTRKVT--------------EVKNNLTDLRLSADRKTVMVRKDDG--------KIYTFPLEKPED  348 (360)
T ss_dssp             EEETTTCCEE--------------EEEEEEEEEEECTTSCEEEEEETTS--------CEEEEESSCTTS
T ss_pred             EEECCCCeEE--------------EecCCcCEEEECCCCCEEEEEECCC--------eEEEEECCCCCc
Confidence            9999875321              1122367899999999999877543        235665554443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.87  E-value=3.7e-19  Score=164.44  Aligned_cols=259  Identities=12%  Similarity=0.070  Sum_probs=185.5

Q ss_pred             EEEEeCCCeEEEEECCCCcEEEEeCCCCc-eEEEEecCCCEE-EEEeCCCcEEEEEcccCcceeeeccCCccccceEEec
Q 009993          157 LFTSGYDSIVRMWHLEDGFSIASSKPLGC-TIRAVAADKKLL-VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW  234 (520)
Q Consensus       157 l~sgs~dg~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                      .++++.|++|.+||+.+++.+.++..... .-.+++|+|++| ++++.++.|.+||+.++.             ....+.
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~-------------~~~~~~   71 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN-------------VIATVP   71 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE-------------EEEEEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc-------------eeeeee
Confidence            35677899999999999999988865433 335677999987 466788999999998763             334444


Q ss_pred             cCCCCeEEEEE--cCCE-EEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc--CCeEEEEECCCCee
Q 009993          235 EHEGPITSLAL--DLTR-IYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS--GSDVYIWDTNSGCL  307 (520)
Q Consensus       235 ~h~~~v~~l~~--~~~~-l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~--d~~i~iwd~~~~~~  307 (520)
                      .+. .+..+.+  ++.. ++++..++.+.+|+..+++....+.+.....++.  +++..++.+.  ++.+.+|+..++..
T Consensus        72 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~  150 (301)
T d1l0qa2          72 AGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV  150 (301)
T ss_dssp             CSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccc-cccccccccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccce
Confidence            444 4677888  5554 5566678899999999999999888666655554  7888776555  78899999999998


Q ss_pred             eEEeecccccceEEEEecCCCCEEEEEeCC-CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEe---
Q 009993          308 LTVVNGAHVGNTKSLARSHTGDFLFTGGED-GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAA---  381 (520)
Q Consensus       308 ~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d-g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s---  381 (520)
                      +..+.  +...+..+.++|++..+++++.+ +.+.+|+....      ........+ ..+..+.+++  ..++.++   
T Consensus       151 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~  221 (301)
T d1l0qa2         151 INTVS--VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN------SVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDK  221 (301)
T ss_dssp             EEEEE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT------EEEEEEECS-SEEEEEEECTTSSEEEEEEECS
T ss_pred             eeecc--cCCCceEEEeeccccceeeecccccccccccccce------eeeeccccc-CCcceeeccccccccccccccc
Confidence            88876  45668899999999988877765 56777777666      344444333 4567777854  4554443   


Q ss_pred             CCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEE-EEecCCCeEEEEeCCchHhH
Q 009993          382 GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRI-VCGGEEGIVRIWNFSQAFEI  456 (520)
Q Consensus       382 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l-~sg~~Dg~v~iwd~~~~~~~  456 (520)
                      .++.|++||+.+......                  ...+....-.++++++++| ++++.|+.|++||+++++.+
T Consensus       222 ~~~~v~v~D~~t~~~~~~------------------~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         222 YFNTVSMIDTGTNKITAR------------------IPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT  279 (301)
T ss_dssp             SCCEEEEEETTTTEEEEE------------------EECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             eeeeeeeeecCCCeEEEE------------------EcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence            347899999987532110                  0111222345666677755 78889999999999987554

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=8.9e-20  Score=177.80  Aligned_cols=221  Identities=15%  Similarity=0.084  Sum_probs=144.9

Q ss_pred             CCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcE--EEEeC---CCCceEEE--EecC
Q 009993          125 FSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS--IASSK---PLGCTIRA--VAAD  193 (520)
Q Consensus       125 ~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~--~~~~~---~~~~~v~~--~~~~  193 (520)
                      .....+|+    +++..+..|. .+..++|+|||+++++++.|++|++||+.+++.  +..++   .|...+.+  ++||
T Consensus        41 ~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpD  119 (432)
T d1qksa2          41 AGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE  119 (432)
T ss_dssp             TTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCT
T ss_pred             CCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCC
Confidence            44457787    5677787774 699999999999999999999999999988763  33332   34334433  2479


Q ss_pred             CCEE-EEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCE-EEEEecCCeEEEEECCCCcE
Q 009993          194 KKLL-VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTR-IYSGSWDMTVRVWDRALLKC  269 (520)
Q Consensus       194 ~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~-l~s~s~dg~v~iwd~~~~~~  269 (520)
                      |++| ++++.++.|++||..++.............  ......+......+.+  ++.. +++...++.|.+||..+++.
T Consensus       120 G~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~  197 (432)
T d1qksa2         120 DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY--DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN  197 (432)
T ss_dssp             TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT--TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE
T ss_pred             CCEEEEEcCCCCeEEEEeCccccceeeeccCCccc--cceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCc
Confidence            9976 678889999999998875322111100000  0011134556666777  5555 56677789999999998875


Q ss_pred             EEE--eeeccCEEEEe--eCCCEEEEEc--CCeEEEEECCCCeeeEEeecc----cccceEEEEecCCCCEEEEEe-CCC
Q 009993          270 LKV--LRHSDWVYGLA--PHDTTVASTS--GSDVYIWDTNSGCLLTVVNGA----HVGNTKSLARSHTGDFLFTGG-EDG  338 (520)
Q Consensus       270 ~~~--~~~~~~v~~~~--~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~~~----~~~~i~~l~~s~~~~~l~tg~-~dg  338 (520)
                      ...  +.+...+..+.  |+++++++++  ++.+.++|..+++.+..+..+    |........+...+...++.. .++
T Consensus       198 ~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~  277 (432)
T d1qksa2         198 LKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDD  277 (432)
T ss_dssp             EEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSS
T ss_pred             ceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCc
Confidence            543  44555566554  9999888777  578999999998887766532    233333444443344444332 366


Q ss_pred             eEEEEEcccC
Q 009993          339 AIHMYEIIND  348 (520)
Q Consensus       339 ~i~iwd~~~~  348 (520)
                      .|.+|+....
T Consensus       278 ~v~~~~~~~~  287 (432)
T d1qksa2         278 SVALIGTDPE  287 (432)
T ss_dssp             EEEEEECCTT
T ss_pred             eEEecccccc
Confidence            7777765443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.84  E-value=1.5e-19  Score=176.35  Aligned_cols=319  Identities=10%  Similarity=0.012  Sum_probs=195.3

Q ss_pred             CCCCcccHH----HhhhhhccccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEE--Ee---CCCCceEEEE--ec
Q 009993          124 GFSDDKSWK----ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA--SS---KPLGCTIRAV--AA  192 (520)
Q Consensus       124 ~~~~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~--~~---~~~~~~v~~~--~~  192 (520)
                      .+...++|+    +++.++..|. .+..++|+|||++|++++.|++|++||+.+++...  .+   .+|...+.+.  +|
T Consensus        40 ~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~sp  118 (426)
T d1hzua2          40 DAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY  118 (426)
T ss_dssp             TTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTC
T ss_pred             CCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecC
Confidence            345568888    5677888774 58999999999999999999999999999887443  22   2344444433  37


Q ss_pred             CCCEEEE-EeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEE-EecCCeEEEEECCCCc
Q 009993          193 DKKLLVA-GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYS-GSWDMTVRVWDRALLK  268 (520)
Q Consensus       193 ~~~~l~s-g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s-~s~dg~v~iwd~~~~~  268 (520)
                      ||+++++ +..++.+.+||..++............  .......+.+....+..  ++..++. ....+.+.+++.....
T Consensus       119 DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~  196 (426)
T d1hzua2         119 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT--VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID  196 (426)
T ss_dssp             TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC--SSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSS
T ss_pred             CCCEEEEeecCCCeEEEEcCCccceeEEeeccCCC--ccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecccc
Confidence            9998755 457899999998876432111100000  00001112333334444  4444333 3334566666665554


Q ss_pred             E--EEEeeeccCEEEEe--eCCCEEEEEc--CCeEEEEECCCCeeeEEeecc-cccceEEEEecCCCC-EE--EEEeCCC
Q 009993          269 C--LKVLRHSDWVYGLA--PHDTTVASTS--GSDVYIWDTNSGCLLTVVNGA-HVGNTKSLARSHTGD-FL--FTGGEDG  338 (520)
Q Consensus       269 ~--~~~~~~~~~v~~~~--~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~~~-~~~~i~~l~~s~~~~-~l--~tg~~dg  338 (520)
                      .  +..+.+...+..+.  +++++++++.  +..+.+++..+++.+.....+ +........+.+.+. .+  ++.+.|+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  276 (426)
T d1hzua2         197 NLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDG  276 (426)
T ss_dssp             SCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTC
T ss_pred             ceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCc
Confidence            3  23344666666665  7888888776  578999999999988776532 122222333332222 22  2344578


Q ss_pred             eEEEEEcccCcc-ccceeeeeeecCCcCCEEEEEecC--CEEEE-------EeCCCcEEEEeCCcccccCCCCCCCceee
Q 009993          339 AIHMYEIINDCT-EANVLLVATWIPHTGPVNSLAFEF--PWLVS-------AAGDGKLSLIDVRKLLRSGRPTSGKRVSR  408 (520)
Q Consensus       339 ~i~iwd~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s-------~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  408 (520)
                      .+.+|+...... ....+...++.+|...+..++|+|  .+|++       ++.|++|+|||+.++.....         
T Consensus       277 ~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~---------  347 (426)
T d1hzua2         277 SISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQ---------  347 (426)
T ss_dssp             EEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCE---------
T ss_pred             eEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeE---------
Confidence            888888765421 122256778889999999999987  57773       55688999999988633211         


Q ss_pred             eeecCCCcccccCcceeeEE--EEecCCEE-EE----ecCCCeEEEEeCCchHh
Q 009993          409 VIEVEPPQRMLHGFECNLLS--VDIGADRI-VC----GGEEGIVRIWNFSQAFE  455 (520)
Q Consensus       409 ~~~~~~~~~~~~~~~~~v~~--~~~~~~~l-~s----g~~Dg~v~iwd~~~~~~  455 (520)
                      +..... ...+..+...|+.  ++++|+++ ++    ++.||.|+|||..+.+.
T Consensus       348 ~~~~~~-~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~  400 (426)
T d1hzua2         348 VLPIAE-WADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL  400 (426)
T ss_dssp             EECHHH-HHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEE
T ss_pred             Eeccch-hcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeE
Confidence            000000 0112234445664  45566654 44    35689999999998753

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=3.8e-19  Score=167.07  Aligned_cols=263  Identities=11%  Similarity=-0.033  Sum_probs=178.5

Q ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEeCCC----CceEEEEecCCCEE-EEEeCCCcEEEEEcccCcceeeeccCCccccc
Q 009993          155 KLLFTSGYDSIVRMWHLEDGFSIASSKPL----GCTIRAVAADKKLL-VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNT  229 (520)
Q Consensus       155 ~~l~sgs~dg~v~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  229 (520)
                      +++++++.|++|+|||+.+++.+.++..+    ...-.+++|||+++ ++++.++.|.+||+.+++.             
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~-------------   68 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-------------   68 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-------------
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE-------------
Confidence            58999999999999999999999888532    23355778999987 5667899999999988742             


Q ss_pred             eEEeccCC-----CCeEEEEE--cCCEEEEEe------------cCCeEEEEECCCCcEEEEeeeccCEEEE--eeCCCE
Q 009993          230 QFRLWEHE-----GPITSLAL--DLTRIYSGS------------WDMTVRVWDRALLKCLKVLRHSDWVYGL--APHDTT  288 (520)
Q Consensus       230 ~~~~~~h~-----~~v~~l~~--~~~~l~s~s------------~dg~v~iwd~~~~~~~~~~~~~~~v~~~--~~~~~~  288 (520)
                      ...+..+.     ..+..+++  ++++++++.            .+..+.+||..+++....+.....+..+  .+++++
T Consensus        69 ~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~  148 (337)
T d1pbyb_          69 LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSK  148 (337)
T ss_dssp             EEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSC
T ss_pred             EEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCE
Confidence            22222221     22334566  667777665            4678999999999999888865555444  489999


Q ss_pred             EEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCC------------------------EEEEEeCCCeEEEEE
Q 009993          289 VASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD------------------------FLFTGGEDGAIHMYE  344 (520)
Q Consensus       289 l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~------------------------~l~tg~~dg~i~iwd  344 (520)
                      +++++ +.+.+||..+++....+.. +. ......++|++.                        ....+..++.+.+|+
T Consensus       149 l~~~~-~~~~~~d~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (337)
T d1pbyb_         149 LYGLG-RDLHVMDPEAGTLVEDKPI-QS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD  225 (337)
T ss_dssp             EEEES-SSEEEEETTTTEEEEEECS-TT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred             EEEEc-CCcceeeeecCcEEEEeec-CC-ccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEE
Confidence            88876 4578899999988877652 11 111112222221                        111223345588888


Q ss_pred             cccCccccceeeeeeecCCcCCEEEEEecCC--EEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCc
Q 009993          345 IINDCTEANVLLVATWIPHTGPVNSLAFEFP--WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF  422 (520)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (520)
                      ..++.     .....+.++...+..+.+++.  ++++  .++.|++||+.+.....                  ....++
T Consensus       226 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~v~d~~~~~~~~------------------~~~~~~  280 (337)
T d1pbyb_         226 LETGE-----MAMREVRIMDVFYFSTAVNPAKTRAFG--AYNVLESFDLEKNASIK------------------RVPLPH  280 (337)
T ss_dssp             TTTCC-----EEEEEEEECSSCEEEEEECTTSSEEEE--EESEEEEEETTTTEEEE------------------EEECSS
T ss_pred             cCCCc-----EEEEEecCCCcceEEEEecccceEEEE--ccccEEEEECCCCcEEE------------------EEcCCC
Confidence            87763     233345567778888888774  4443  36899999999853221                  112234


Q ss_pred             ceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHH
Q 009993          423 ECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIER  458 (520)
Q Consensus       423 ~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~  458 (520)
                      .....++++++++|++++.||.|++||..+.+.+.+
T Consensus       281 ~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~  316 (337)
T d1pbyb_         281 SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ  316 (337)
T ss_dssp             CCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred             CEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence            444567777888999999999999999998765443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.81  E-value=3.7e-17  Score=150.72  Aligned_cols=245  Identities=13%  Similarity=0.075  Sum_probs=181.2

Q ss_pred             CcccHH----HhhhhhccccccEEEEEEccCCCEE-EEEeCCCeEEEEECCCCcEEEEeCCCCce-EEEEecCCCEEE-E
Q 009993          127 DDKSWK----ELIDVLYGHTEAVLTVFVLASAKLL-FTSGYDSIVRMWHLEDGFSIASSKPLGCT-IRAVAADKKLLV-A  199 (520)
Q Consensus       127 ~~~~W~----~~~~~l~~h~~~V~~l~~~~~~~~l-~sgs~dg~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~l~-s  199 (520)
                      ...+|+    ++++++... +.+..++|+|||++| ++++.++.|++||+.+++.+..+..+..+ -..+++++..++ +
T Consensus        13 ~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (301)
T d1l0qa2          13 NISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVT   91 (301)
T ss_dssp             EEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEE
T ss_pred             EEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccccccccccc
Confidence            345666    334444433 457899999999987 46778999999999999999988766543 334557877554 5


Q ss_pred             EeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEE-EEEecCCeEEEEECCCCcEEEEeeec
Q 009993          200 GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRI-YSGSWDMTVRVWDRALLKCLKVLRHS  276 (520)
Q Consensus       200 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~~~  276 (520)
                      +..++.+.+|+..++.             ....+ .+...+.++.+  ++..+ +++..++.+.+|+..+...+..+.+.
T Consensus        92 ~~~~~~~~~~~~~~~~-------------~~~~~-~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (301)
T d1l0qa2          92 NMASSTLSVIDTTSNT-------------VAGTV-KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG  157 (301)
T ss_dssp             ETTTTEEEEEETTTTE-------------EEEEE-ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             ccccceeeecccccce-------------eeeec-cccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC
Confidence            5667889999987652             22233 34456677888  66665 56667889999999999999988866


Q ss_pred             cCEEEEe--eCCCEEEEEc--CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC---CCeEEEEEcccCc
Q 009993          277 DWVYGLA--PHDTTVASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE---DGAIHMYEIINDC  349 (520)
Q Consensus       277 ~~v~~~~--~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~---dg~i~iwd~~~~~  349 (520)
                      ..+..+.  +++..++++.  ++.+.+|+...........  ....+..+++++++..+++++.   ++.|++||+.++ 
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~-  234 (301)
T d1l0qa2         158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK--VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-  234 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-
T ss_pred             CCceEEEeeccccceeeecccccccccccccceeeeeccc--ccCCcceeeccccccccccccccceeeeeeeeecCCC-
Confidence            6666655  7788777776  4778899988887777665  4556788999999998776543   468999999988 


Q ss_pred             cccceeeeeeecCCcCCEEEEEecC--CEE-EEEeCCCcEEEEeCCccc
Q 009993          350 TEANVLLVATWIPHTGPVNSLAFEF--PWL-VSAAGDGKLSLIDVRKLL  395 (520)
Q Consensus       350 ~~~~~~~~~~~~~h~~~v~~l~~~~--~~l-~s~s~dg~i~vwd~~~~~  395 (520)
                           +.+..+..+ ..+++++|+|  ++| ++++.|+.|++||+.++.
T Consensus       235 -----~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         235 -----KITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT  277 (301)
T ss_dssp             -----EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             -----eEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence                 555555443 4679999976  565 677789999999998853

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.80  E-value=3.5e-19  Score=167.97  Aligned_cols=275  Identities=13%  Similarity=0.048  Sum_probs=178.4

Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeC-CCC--ceEEEEecCCCEE-EEEeCCCcEEEEEcccCcceeeeccC
Q 009993          148 VFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-PLG--CTIRAVAADKKLL-VAGGTDGFIHCWRAVEVLPHLFDISG  223 (520)
Q Consensus       148 l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~-~~~--~~v~~~~~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~  223 (520)
                      ++|++++++|++++.|++|.+||+.+++.+.+++ ++.  ..-.+++|||+++ ++++.++.|.+||+.++..... ...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~-~~~   80 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH-ANL   80 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-EES
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeee-ecc
Confidence            4688999999999999999999999999998875 333  3356778999987 5556789999999988742110 000


Q ss_pred             CccccceEEeccCCCCeEEEEE--cCCEEEEEe------------cCCeEEEEECCCCcEEEEee---eccCEEEE--ee
Q 009993          224 SEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS------------WDMTVRVWDRALLKCLKVLR---HSDWVYGL--AP  284 (520)
Q Consensus       224 ~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s------------~dg~v~iwd~~~~~~~~~~~---~~~~v~~~--~~  284 (520)
                      ....      ..+...+..+++  |++++++++            .++.+.+||..+++....+.   .+..+..+  ..
T Consensus        81 ~~~~------~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (346)
T d1jmxb_          81 SSVP------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD  154 (346)
T ss_dssp             CCST------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT
T ss_pred             cccc------cccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC
Confidence            0000      011122345666  777777664            46788999988876655443   22233333  34


Q ss_pred             CCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCE--------------------------EEEEeCCC
Q 009993          285 HDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDF--------------------------LFTGGEDG  338 (520)
Q Consensus       285 ~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~--------------------------l~tg~~dg  338 (520)
                      ++..++.  ++.+.+||+.+++.+..+..  ......+.++|++..                          ++++..++
T Consensus       155 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (346)
T d1jmxb_         155 DGSLYVA--GPDIYKMDVKTGKYTVALPL--RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY  230 (346)
T ss_dssp             TSCEEEE--SSSEEEECTTTCCEEEEECS--TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred             CCEEEEe--CCcceEEEccCCCEEEEEec--CCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCc
Confidence            5554443  45689999999988887752  223334444454433                          23333445


Q ss_pred             eEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCc
Q 009993          339 AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQ  416 (520)
Q Consensus       339 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (520)
                      .+.+||..++.     .......+|...+..+.+++  .+++.+. ++.|.+||..+....                  .
T Consensus       231 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~------------------~  286 (346)
T d1jmxb_         231 GYLSVDLKTGK-----THTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLI------------------K  286 (346)
T ss_dssp             EEEEEETTTCC-----EEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEE------------------E
T ss_pred             eEEEEECCCCc-----eEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEE------------------E
Confidence            57777776663     23344556777888888865  4555554 457999999875221                  1


Q ss_pred             ccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHH
Q 009993          417 RMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIE  457 (520)
Q Consensus       417 ~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~  457 (520)
                      ....++.....++++++++|++++.||.|++||..+.+.+.
T Consensus       287 ~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~  327 (346)
T d1jmxb_         287 AANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK  327 (346)
T ss_dssp             EEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred             EEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEE
Confidence            11223445567778888899999999999999999876554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.74  E-value=2.1e-15  Score=143.55  Aligned_cols=285  Identities=11%  Similarity=0.000  Sum_probs=182.7

Q ss_pred             hccccccEEEEEEccCCCEEEEE-----eCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEe----------C
Q 009993          138 LYGHTEAVLTVFVLASAKLLFTS-----GYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGG----------T  202 (520)
Q Consensus       138 l~~h~~~V~~l~~~~~~~~l~sg-----s~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~----------~  202 (520)
                      ..+|.+++.+++++|||+.++..     +.++.|.+||..+++.+.++..+...-..++|||++|++++          .
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCccccccc
Confidence            34688899999999999988764     23567999999999999999888777788999999998875          4


Q ss_pred             CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCe-------EEEEE--cCCEEEEE--ecCCeEEEEECCCCcEEE
Q 009993          203 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPI-------TSLAL--DLTRIYSG--SWDMTVRVWDRALLKCLK  271 (520)
Q Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-------~~l~~--~~~~l~s~--s~dg~v~iwd~~~~~~~~  271 (520)
                      ++.|.+||..++..             ...+..+....       ..+.+  +++.++..  ..++.+.+|+..+.+...
T Consensus        96 ~~~v~v~D~~t~~~-------------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~  162 (373)
T d2madh_          96 TDYVEVFDPVTFLP-------------IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQ  162 (373)
T ss_pred             ceEEEEEECCCCcE-------------EEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEE
Confidence            57899999988742             22222222222       22333  66554444  345678888887776554


Q ss_pred             EeeeccCEEEEeeCCCEE-EEEc-CCeEEEEECCCCeeeEEeec-----ccccceEEEEecCCCCEEEEEeCCCeEEEEE
Q 009993          272 VLRHSDWVYGLAPHDTTV-ASTS-GSDVYIWDTNSGCLLTVVNG-----AHVGNTKSLARSHTGDFLFTGGEDGAIHMYE  344 (520)
Q Consensus       272 ~~~~~~~v~~~~~~~~~l-~~~~-d~~i~iwd~~~~~~~~~~~~-----~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd  344 (520)
                      ...... ...+.++++.+ ++.+ |+.+.+||...+........     +.......+.+.+++. ++..+.++.+.+|+
T Consensus       163 ~~~~~~-~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~  240 (373)
T d2madh_         163 LLSSPT-CYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQAD  240 (373)
T ss_pred             Eeccce-eEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEE
Confidence            443221 22345777654 4555 89999999998877665432     1122234455666554 44566788999999


Q ss_pred             cccCccccceeeeeeecCCcCC----------EEEEEe------------cCCEEEEEeCCCcEEEEeCCcccccCCCCC
Q 009993          345 IINDCTEANVLLVATWIPHTGP----------VNSLAF------------EFPWLVSAAGDGKLSLIDVRKLLRSGRPTS  402 (520)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~h~~~----------v~~l~~------------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~  402 (520)
                      ......    ........+...          ...+++            ....+++...++.+.+||..++....    
T Consensus       241 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~----  312 (373)
T d2madh_         241 ISAAGA----TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS----  312 (373)
T ss_pred             cCCCeE----EEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEE----
Confidence            877632    111111111111          111222            12455667778889999988753221    


Q ss_pred             CCceeeeeecCCCcccccCcceeeEEEEecCC--EEEEecCCCeEEEEeCCchHhHHHH
Q 009993          403 GKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERR  459 (520)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~~~~~~~  459 (520)
                                    ....++......++++++  ++++++.|+.|++||+.+++.+.+.
T Consensus       313 --------------~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~  357 (373)
T d2madh_         313 --------------QISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             --------------EecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence                          112233344456677777  4578999999999999999776543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=4.5e-16  Score=145.62  Aligned_cols=244  Identities=14%  Similarity=0.064  Sum_probs=172.0

Q ss_pred             CcccHH----Hhhhhhcc--ccccEEEEEEccCCCEE-EEEeCCCeEEEEECCCCcEEEEeCCCCce-------EEEEec
Q 009993          127 DDKSWK----ELIDVLYG--HTEAVLTVFVLASAKLL-FTSGYDSIVRMWHLEDGFSIASSKPLGCT-------IRAVAA  192 (520)
Q Consensus       127 ~~~~W~----~~~~~l~~--h~~~V~~l~~~~~~~~l-~sgs~dg~v~vwd~~~~~~~~~~~~~~~~-------v~~~~~  192 (520)
                      ...+|+    ++++++..  +...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..+...       -.++++
T Consensus        12 ~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~   91 (337)
T d1pbyb_          12 KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP   91 (337)
T ss_dssp             EEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT
T ss_pred             EEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcC
Confidence            345666    44555543  44567899999999987 56678999999999999998887654332       245779


Q ss_pred             CCCEEEEEeC------------CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCe
Q 009993          193 DKKLLVAGGT------------DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMT  258 (520)
Q Consensus       193 ~~~~l~sg~~------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~  258 (520)
                      +++.++++..            ++.+.+||..++.             ....+ .+...+..+++  ++.++++++.+  
T Consensus        92 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------------~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~--  155 (337)
T d1pbyb_          92 DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-------------RRKAF-EAPRQITMLAWARDGSKLYGLGRD--  155 (337)
T ss_dssp             TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-------------EEEEE-ECCSSCCCEEECTTSSCEEEESSS--
T ss_pred             CCcEEEEeecCCcceeeeccccccceeeccccCCe-------------EEEec-cccCCceEEEEcCCCCEEEEEcCC--
Confidence            9999988764            4667777776542             22223 24456777888  77888888754  


Q ss_pred             EEEEECCCCcEEEEeeeccCE--EEEeeC----------CC--------------EEEEEc-CCeEEEEECCCCeeeEEe
Q 009993          259 VRVWDRALLKCLKVLRHSDWV--YGLAPH----------DT--------------TVASTS-GSDVYIWDTNSGCLLTVV  311 (520)
Q Consensus       259 v~iwd~~~~~~~~~~~~~~~v--~~~~~~----------~~--------------~l~~~~-d~~i~iwd~~~~~~~~~~  311 (520)
                      +.+||..+++....+......  ....++          ..              ....+. ++.+.+||..++......
T Consensus       156 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (337)
T d1pbyb_         156 LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE  235 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred             cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEE
Confidence            778999999888776521100  000011          11              111112 346999999998766654


Q ss_pred             ecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEE
Q 009993          312 NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLI  389 (520)
Q Consensus       312 ~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vw  389 (520)
                      ...+...+..+.++|++.+++++  ++.|++||+.++      ..+..+ .+...+.+++|+|  ++|++++.|++|+||
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~------~~~~~~-~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~  306 (337)
T d1pbyb_         236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN------ASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAY  306 (337)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT------EEEEEE-ECSSCCCEEEECTTSCEEEEESBSSEEEEE
T ss_pred             ecCCCcceEEEEecccceEEEEc--cccEEEEECCCC------cEEEEE-cCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            44577788899999999988766  588999999998      555555 3456789999975  699999999999999


Q ss_pred             eCCccc
Q 009993          390 DVRKLL  395 (520)
Q Consensus       390 d~~~~~  395 (520)
                      |..+..
T Consensus       307 D~~t~~  312 (337)
T d1pbyb_         307 DAETLE  312 (337)
T ss_dssp             ETTTCC
T ss_pred             ECCCCc
Confidence            998853

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=3.1e-16  Score=148.25  Aligned_cols=285  Identities=12%  Similarity=0.019  Sum_probs=173.4

Q ss_pred             EEEEEccCCCEEEEEe-----CCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEE----------eCCCcEEEEE
Q 009993          146 LTVFVLASAKLLFTSG-----YDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAG----------GTDGFIHCWR  210 (520)
Q Consensus       146 ~~l~~~~~~~~l~sgs-----~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg----------~~dg~i~vwd  210 (520)
                      .-.+.+||++.++...     .+..|.+||..+++.+.++..+..+..+++|||++|++.          ..|+.|.+||
T Consensus         5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D   84 (355)
T d2bbkh_           5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFD   84 (355)
T ss_dssp             BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence            3345689999887653     466799999999999999887777778899999988764          3478999999


Q ss_pred             cccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEe--cCCeEEEEECCCCcEEEEeeeccCEEEEe-eC
Q 009993          211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS--WDMTVRVWDRALLKCLKVLRHSDWVYGLA-PH  285 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~v~~~~-~~  285 (520)
                      ..++...........      ...........+.|  ++++++.++  .+..+.+||..+++.+..+.......... ..
T Consensus        85 ~~t~~~~~~~~~~~~------~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (355)
T d2bbkh_          85 PVTLLPTADIELPDA------PRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAP  158 (355)
T ss_dssp             TTTCCEEEEEEETTC------CCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEET
T ss_pred             CCCCCEEEEEecCCc------ceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCC
Confidence            988742110000000      00011122234566  777766654  56789999999999888877433333222 22


Q ss_pred             CCEEEEEcCCeEEEEECCCCeeeEEee-----cccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeee
Q 009993          286 DTTVASTSGSDVYIWDTNSGCLLTVVN-----GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW  360 (520)
Q Consensus       286 ~~~l~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~  360 (520)
                      ...++.+.|+...++..........+.     ..+...+....+.+++..++.++.++.+++|++..+..    ..+...
T Consensus       159 ~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~  234 (355)
T d2bbkh_         159 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA----KFLPAV  234 (355)
T ss_dssp             TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC----EECCCE
T ss_pred             cceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE----EEEecc
Confidence            233333335555555443332222221     12334455667788888999999999999999987632    111111


Q ss_pred             cCCc----------CCEEEEEec--CCEEEEEeCC----------CcEEEEeCCcccccCCCCCCCceeeeeecCCCccc
Q 009993          361 IPHT----------GPVNSLAFE--FPWLVSAAGD----------GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRM  418 (520)
Q Consensus       361 ~~h~----------~~v~~l~~~--~~~l~s~s~d----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (520)
                      ..+.          .....++++  +..++....+          ..|.+||..+.....                  ..
T Consensus       235 ~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~------------------~~  296 (355)
T d2bbkh_         235 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA------------------KF  296 (355)
T ss_dssp             ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE------------------EE
T ss_pred             CCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEE------------------Ee
Confidence            1111          112234443  3455444332          368999988742111                  11


Q ss_pred             ccCcceeeEEEEecCC--EEEEecCCCeEEEEeCCchHhHHH
Q 009993          419 LHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIER  458 (520)
Q Consensus       419 ~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~~~~~~  458 (520)
                      ..++.....+++++++  ++++++.|+.|++||.++++.+++
T Consensus       297 ~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~  338 (355)
T d2bbkh_         297 EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS  338 (355)
T ss_dssp             EEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             cCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEE
Confidence            1223334556677776  567888899999999999876543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.66  E-value=1.2e-15  Score=143.19  Aligned_cols=250  Identities=12%  Similarity=-0.012  Sum_probs=168.2

Q ss_pred             CCCcccHH----Hhhhhhc-cccccEEEEEEccCCCEE-EEEeCCCeEEEEECCCCcEEEEeCCCC--------ceEEEE
Q 009993          125 FSDDKSWK----ELIDVLY-GHTEAVLTVFVLASAKLL-FTSGYDSIVRMWHLEDGFSIASSKPLG--------CTIRAV  190 (520)
Q Consensus       125 ~~~~~~W~----~~~~~l~-~h~~~V~~l~~~~~~~~l-~sgs~dg~v~vwd~~~~~~~~~~~~~~--------~~v~~~  190 (520)
                      .....+|+    +++++++ .|...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+....        ..-.++
T Consensus        17 ~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~   96 (346)
T d1jmxb_          17 PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAI   96 (346)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEE
T ss_pred             CCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEE
Confidence            33446777    5566665 456678899999999987 556678999999999998887664321        123467


Q ss_pred             ecCCCEEEEEe------------CCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCC
Q 009993          191 AADKKLLVAGG------------TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDM  257 (520)
Q Consensus       191 ~~~~~~l~sg~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg  257 (520)
                      +++|+++++++            .++.+.+|+..++..          ..... .......+..+.+ ++..++..+  +
T Consensus        97 s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~  163 (346)
T d1jmxb_          97 SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE----------AKPVR-TFPMPRQVYLMRAADDGSLYVAG--P  163 (346)
T ss_dssp             CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG----------BCCSE-EEECCSSCCCEEECTTSCEEEES--S
T ss_pred             ecCCCEEEEEecCCcceeeeeccCcceEEEEeccccee----------eeEEE-eeeccCceEEEEecCCCEEEEeC--C
Confidence            79999988775            467788888776531          11111 1112233444444 334444433  4


Q ss_pred             eEEEEECCCCcEEEEeeeccCEEEE--ee--------------------------CCCEEEEEc-CCeEEEEECCCCeee
Q 009993          258 TVRVWDRALLKCLKVLRHSDWVYGL--AP--------------------------HDTTVASTS-GSDVYIWDTNSGCLL  308 (520)
Q Consensus       258 ~v~iwd~~~~~~~~~~~~~~~v~~~--~~--------------------------~~~~l~~~~-d~~i~iwd~~~~~~~  308 (520)
                      .+.+|+..+++.+..+........+  .+                          ....++++. +..+.+||..++...
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (346)
T d1jmxb_         164 DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH  243 (346)
T ss_dssp             SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE
T ss_pred             cceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceE
Confidence            5899999999888776522211111  11                          112222333 567899999998877


Q ss_pred             EEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcE
Q 009993          309 TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKL  386 (520)
Q Consensus       309 ~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i  386 (520)
                      ......+...+..+.+++++.+++.+. ++.|.+||..++      +.+..+. +...+.+++|+|  ++|++++.|+.|
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~------~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v  315 (346)
T d1jmxb_         244 TQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQR------KLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDL  315 (346)
T ss_dssp             EEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTT------EEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEE
T ss_pred             EEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCC------cEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcE
Confidence            666556888899999999988887765 457999999988      5555543 345688999976  799999999999


Q ss_pred             EEEeCCccc
Q 009993          387 SLIDVRKLL  395 (520)
Q Consensus       387 ~vwd~~~~~  395 (520)
                      ++||+.+..
T Consensus       316 ~v~D~~t~~  324 (346)
T d1jmxb_         316 AVFNPDTLE  324 (346)
T ss_dssp             EEEETTTTE
T ss_pred             EEEECccCC
Confidence            999999853

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=2.2e-14  Score=133.84  Aligned_cols=291  Identities=11%  Similarity=0.089  Sum_probs=175.5

Q ss_pred             EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEe-cCCeEEEEECCCCcEEEE
Q 009993          196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRALLKCLKV  272 (520)
Q Consensus       196 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~v~iwd~~~~~~~~~  272 (520)
                      .+++++.|++|++|++.+..           .........|.+.+..|+|  |+++|++++ .|+.|++|++........
T Consensus         6 v~v~~~~~~~I~v~~~~~~~-----------~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~   74 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEG-----------ALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT   74 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTS-----------CEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EEEECCCCCcEEEEEEcCCC-----------CeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEE
Confidence            45778899999999986532           1123334468889999999  778886555 589999999986643322


Q ss_pred             e----eeccCEE--EEeeCCCEEEEEc--CCeEEEEECCCCeeeEEee-cccccceEEEEecCCCCEEEEEeC-CCeEEE
Q 009993          273 L----RHSDWVY--GLAPHDTTVASTS--GSDVYIWDTNSGCLLTVVN-GAHVGNTKSLARSHTGDFLFTGGE-DGAIHM  342 (520)
Q Consensus       273 ~----~~~~~v~--~~~~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~tg~~-dg~i~i  342 (520)
                      +    .....+.  +++++++++++++  ++.+.+|+........... ..+...+.++.++|+++++++++. +..|.+
T Consensus        75 ~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~  154 (333)
T d1ri6a_          75 FAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICL  154 (333)
T ss_dssp             EEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEE
T ss_pred             EeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeE
Confidence            2    2333333  4559999998887  6789999987765544332 235667889999999998887764 567999


Q ss_pred             EEcccCccccceeeeeeecCCcCCEEEEEecC--CEEE-EEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccc
Q 009993          343 YEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLV-SAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML  419 (520)
Q Consensus       343 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (520)
                      |+.........................++|++  .+++ +....+...+|+.........     ....+.....  ...
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~~~--~~~  227 (333)
T d1ri6a_         155 FTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE-----CVQTLDMMPE--NFS  227 (333)
T ss_dssp             EEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE-----EEEEEECSCT--TCC
T ss_pred             EEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeeccccccee-----eeeeeeeeec--CCC
Confidence            99877643221112222233455678899965  3444 445667788888764321110     0000000000  001


Q ss_pred             cCcceeeEEEEecCC-EEEEecCCCeEEEEeCCchHhHHHHhhhhcccccchhhhhccceeeeccCCCcccccccccccC
Q 009993          420 HGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKN  498 (520)
Q Consensus       420 ~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~s~~~~~~  498 (520)
                      .........++++++ .++++..++.+.+|++............       ......+..++|+|||++++++..     
T Consensus       228 ~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~p~~~a~spDGk~l~va~~-----  295 (333)
T d1ri6a_         228 DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF-------QPTETQPRGFNVDHSGKYLIAAGQ-----  295 (333)
T ss_dssp             SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE-------EECSSSCCCEEECTTSSEEEEECT-----
T ss_pred             ccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEE-------eCCCCCeeEEEEeCCCCEEEEEEC-----
Confidence            111223345667776 5666777889999998765332211110       011123567899999999876542     


Q ss_pred             CCCCCcceeeecccCCCCccC
Q 009993          499 PMNGNRRSVWHNKRGMSGKLK  519 (520)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~~~~  519 (520)
                        +.+...+|.-- ..+||++
T Consensus       296 --~~~~v~v~~id-~~tG~l~  313 (333)
T d1ri6a_         296 --KSHHISVYEIV-GEQGLLH  313 (333)
T ss_dssp             --TTCEEEEEEEE-TTTTEEE
T ss_pred             --CCCeEEEEEEE-CCCCcEE
Confidence              23345677431 3455553

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=2.7e-13  Score=126.23  Aligned_cols=272  Identities=10%  Similarity=0.099  Sum_probs=166.3

Q ss_pred             EEEEEeCCCeEEEEECCCCcEEEEe--CCCCceE--EEEecCCCEEEEEe-CCCcEEEEEcccCcceeeeccCCccccce
Q 009993          156 LLFTSGYDSIVRMWHLEDGFSIASS--KPLGCTI--RAVAADKKLLVAGG-TDGFIHCWRAVEVLPHLFDISGSEKQNTQ  230 (520)
Q Consensus       156 ~l~sgs~dg~v~vwd~~~~~~~~~~--~~~~~~v--~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  230 (520)
                      .+++++.|++|++|++.+...+..+  ..|...+  .+++|||++|++++ .|+.|.+|++......          ...
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~----------~~~   75 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA----------LTF   75 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC----------EEE
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCc----------EEE
Confidence            4578889999999999765332222  2333333  46779999986555 5899999998765311          111


Q ss_pred             EEeccCCCCeEEEEE--cCCEEEEEec-CCeEEEEECCCCcEEEEee---eccCEEE--EeeCCCEEEEEc--CCeEEEE
Q 009993          231 FRLWEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDRALLKCLKVLR---HSDWVYG--LAPHDTTVASTS--GSDVYIW  300 (520)
Q Consensus       231 ~~~~~h~~~v~~l~~--~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~---~~~~v~~--~~~~~~~l~~~~--d~~i~iw  300 (520)
                      .....+...+..+++  ++++|++++. +++|.+|+...........   +...+.+  +.++++.++.+.  +..+.+|
T Consensus        76 ~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~  155 (333)
T d1ri6a_          76 AAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLF  155 (333)
T ss_dssp             EEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEE
T ss_pred             eeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEE
Confidence            122234455677888  7788888875 6789999987766554443   4444544  458899888877  5789999


Q ss_pred             ECCCCeeeEE-----eecccccceEEEEecCCCCEEEEEe-CCCeEEEEEcccCccccce-eeeeee---cCCcCCEEEE
Q 009993          301 DTNSGCLLTV-----VNGAHVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDCTEANV-LLVATW---IPHTGPVNSL  370 (520)
Q Consensus       301 d~~~~~~~~~-----~~~~~~~~i~~l~~s~~~~~l~tg~-~dg~i~iwd~~~~~~~~~~-~~~~~~---~~h~~~v~~l  370 (520)
                      +.........     ...........++|++++..++... ..+...+++.......... ..+...   .........+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (333)
T d1ri6a_         156 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI  235 (333)
T ss_dssp             EECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred             EeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeE
Confidence            9876543222     1223445678899999998877554 5677888887554221110 011111   1223455666


Q ss_pred             EecC--C-EEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEE-ecCCCeEE
Q 009993          371 AFEF--P-WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVC-GGEEGIVR  446 (520)
Q Consensus       371 ~~~~--~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s-g~~Dg~v~  446 (520)
                      .+++  + .++++..++.+.+|++.......         ....     ....+....-.++++++++|++ +..++.|+
T Consensus       236 ~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-----~~~~~~~p~~~a~spDGk~l~va~~~~~~v~  301 (333)
T d1ri6a_         236 HITPDGRHLYACDRTASLITVFSVSEDGSVL---------SKEG-----FQPTETQPRGFNVDHSGKYLIAAGQKSHHIS  301 (333)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSCCE---------EEEE-----EEECSSSCCCEEECTTSSEEEEECTTTCEEE
T ss_pred             EEecccCceeeecccCCeEEEEEEcCCCCEE---------EEEE-----EeCCCCCeeEEEEeCCCCEEEEEECCCCeEE
Confidence            7754  4 44555667899999987531110         0000     0001111224577888886555 45678999


Q ss_pred             EEeCC
Q 009993          447 IWNFS  451 (520)
Q Consensus       447 iwd~~  451 (520)
                      +|++.
T Consensus       302 v~~id  306 (333)
T d1ri6a_         302 VYEIV  306 (333)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.57  E-value=2.4e-12  Score=122.02  Aligned_cols=237  Identities=10%  Similarity=-0.085  Sum_probs=154.4

Q ss_pred             HhhhhhccccccEEEEEEccCCCEEEEEe----------CCCeEEEEECCCCcEEEEeCCCCceEE---------EEecC
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAKLLFTSG----------YDSIVRMWHLEDGFSIASSKPLGCTIR---------AVAAD  193 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs----------~dg~v~vwd~~~~~~~~~~~~~~~~v~---------~~~~~  193 (520)
                      +++.++.++...  .++|+|||++|++++          .++.|.+||..+++.+..+..+.....         .++++
T Consensus        58 ~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  135 (373)
T d2madh_          58 SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPN  135 (373)
T ss_pred             CEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeC
Confidence            445556666544  789999999999875          467899999999999888766654443         44566


Q ss_pred             CCEEEEEe--CCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCC-EEEEEecCCeEEEEECCCCc
Q 009993          194 KKLLVAGG--TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLT-RIYSGSWDMTVRVWDRALLK  268 (520)
Q Consensus       194 ~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~s~s~dg~v~iwd~~~~~  268 (520)
                      ++.++...  .++.+.+|+..+..                 ...+.....++.+  +++ .+++.+.|+++.+||...+.
T Consensus       136 g~~~~v~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~  198 (373)
T d2madh_         136 NADLLFFQFAAGPAVGLVVQGGSS-----------------DDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGA  198 (373)
T ss_pred             CCcEEEEEEcCCCceEEeeccCCe-----------------EEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCce
Confidence            66544443  34556666654331                 1223334556666  554 46788999999999999887


Q ss_pred             EEEEee-e------ccCEEEEe--eCCCEEEEEcCCeEEEEECCCCeeeEEeec-cc----------ccceEEEEecCCC
Q 009993          269 CLKVLR-H------SDWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNG-AH----------VGNTKSLARSHTG  328 (520)
Q Consensus       269 ~~~~~~-~------~~~v~~~~--~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~----------~~~i~~l~~s~~~  328 (520)
                      ...... +      ......+.  .++..++.+.++.+.+|+...+........ .+          ......+++++++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  278 (373)
T d2madh_         199 AGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS  278 (373)
T ss_pred             eeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCC
Confidence            776654 1      11112222  445555555589999999887754322210 11          1223345566655


Q ss_pred             CEE----------EEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--C--EEEEEeCCCcEEEEeCCcc
Q 009993          329 DFL----------FTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P--WLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       329 ~~l----------~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~  394 (520)
                      ..+          ++...++.+.+||..++      ..+..+ .+...+.+++|+|  +  ++++++.|+.|+|||+.++
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~------~~~~~~-~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg  351 (373)
T d2madh_         279 DGIYLLTSEQSAWKLHAAAKEVTSVTGLVG------QTSSQI-SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG  351 (373)
T ss_pred             CeEEEecCCCceEEeecCCCeEEEEECCCC------cEEEEe-cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence            543          45566778999999888      455554 3566789999976  3  4578899999999999985


Q ss_pred             c
Q 009993          395 L  395 (520)
Q Consensus       395 ~  395 (520)
                      .
T Consensus       352 ~  352 (373)
T d2madh_         352 D  352 (373)
T ss_pred             C
Confidence            3

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.47  E-value=2.6e-12  Score=120.76  Aligned_cols=239  Identities=10%  Similarity=0.003  Sum_probs=149.7

Q ss_pred             HhhhhhccccccEEEEEEccCCCEEEEE----------eCCCeEEEEECCCCcEEEEeCCCC---------ceEEEEecC
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAKLLFTS----------GYDSIVRMWHLEDGFSIASSKPLG---------CTIRAVAAD  193 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sg----------s~dg~v~vwd~~~~~~~~~~~~~~---------~~v~~~~~~  193 (520)
                      +++.++..+..+  .++|+|||++|+++          +.|+.|++||..+++.+..+..+.         .....++++
T Consensus        39 ~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  116 (355)
T d2bbkh_          39 RVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD  116 (355)
T ss_dssp             EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT
T ss_pred             cEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecC
Confidence            334455554443  78999999988764          347899999999999887664221         223578899


Q ss_pred             CCEEEEEe--CCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEE
Q 009993          194 KKLLVAGG--TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLK  271 (520)
Q Consensus       194 ~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~  271 (520)
                      ++.++.+.  .+..+.+|+..++.             ....+..+. ............++.+.|+...++.........
T Consensus       117 g~~~~v~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~-~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~  182 (355)
T d2bbkh_         117 GKTLLFYQFSPAPAVGVVDLEGKA-------------FKRMLDVPD-CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE  182 (355)
T ss_dssp             SSEEEEEECSSSCEEEEEETTTTE-------------EEEEEECCS-EEEEEEEETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred             CCeeEEecCCCCceeeeeecCCCc-------------EeeEEecCC-cceEeecCCcceEEEcCCCCEEEEEecCCCeEE
Confidence            99888765  45778999987763             122222221 111222244555566666666666554443333


Q ss_pred             Eee-------eccCE--EEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEee-ccc----------ccceEEEEecCCCCE
Q 009993          272 VLR-------HSDWV--YGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVN-GAH----------VGNTKSLARSHTGDF  330 (520)
Q Consensus       272 ~~~-------~~~~v--~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~-~~~----------~~~i~~l~~s~~~~~  330 (520)
                      .+.       +...+  .....++..++.++ ++.+++|++..+....... ..+          ......+++++++..
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~  262 (355)
T d2bbkh_         183 ITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR  262 (355)
T ss_dssp             EEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTE
T ss_pred             EEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCe
Confidence            222       11112  12335566666666 8999999998875422110 011          123345789999998


Q ss_pred             EEEEeCC----------CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--C--EEEEEeCCCcEEEEeCCcc
Q 009993          331 LFTGGED----------GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P--WLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       331 l~tg~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~  394 (520)
                      ++....+          ..|.+||..++      +.+..+. +...+.+++|+|  +  ++++++.|+.|+|||+.++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~v~v~d~~t~------~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg  333 (355)
T d2bbkh_         263 IYLLVDQRDEWRHKTASRFVVVLDAKTG------ERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG  333 (355)
T ss_dssp             EEEEEEECCTTCTTSCEEEEEEEETTTC------CEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEeccCCceeecCCCCeEEEEeCCCC------cEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC
Confidence            8766543          36999999988      4454443 334578999976  3  4567778999999999985

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.3e-13  Score=103.71  Aligned_cols=61  Identities=26%  Similarity=0.322  Sum_probs=55.7

Q ss_pred             CcccccCcccccccCCCHHHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhhhhhhhc
Q 009993           52 CNDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERW  112 (520)
Q Consensus        52 ~~~~~~~~~~~~~~~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~~~~~~~  112 (520)
                      .+.+.|.+++|+|..||.||+.+||+|||+.+|+++++|||+|+.++.++.+|+.+|...+
T Consensus         7 ~~~~~p~~~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~   67 (102)
T d2ovrb1           7 MQVIEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEG   67 (102)
T ss_dssp             HHHHCCCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTT
T ss_pred             HHHcCchhccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcC
Confidence            3557789999999999999999999999999999999999999999999999999765544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.39  E-value=5.6e-12  Score=119.35  Aligned_cols=280  Identities=7%  Similarity=-0.044  Sum_probs=167.3

Q ss_pred             ccccEEEEEEccCCCEEE---EEeCCCe--EEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEe----------CCCc
Q 009993          141 HTEAVLTVFVLASAKLLF---TSGYDSI--VRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGG----------TDGF  205 (520)
Q Consensus       141 h~~~V~~l~~~~~~~~l~---sgs~dg~--v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~----------~dg~  205 (520)
                      +.+....++..++++...   +...+++  |.+||..+++.+.....+......++++++.|++.+          .|+.
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~   97 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDY   97 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCCcceECCCCCEEEEEcccCccccccccCCe
Confidence            444445556677777532   2344444  667799999999888877777788999999888764          4678


Q ss_pred             EEEEEcccCcceeeeccCCccccceEEeccC-------CCCeEEEEE--cCCEEEEEe-cCCeEEEEECCCCcEEEEeee
Q 009993          206 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEH-------EGPITSLAL--DLTRIYSGS-WDMTVRVWDRALLKCLKVLRH  275 (520)
Q Consensus       206 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~--~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~  275 (520)
                      |.+||..++..             ...+..+       ......++|  |+++++++. .++.+.+||+.+++....+..
T Consensus        98 v~v~D~~t~~~-------------~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~  164 (368)
T d1mdah_          98 VEVFDPVTFLP-------------IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKS  164 (368)
T ss_dssp             EEEECTTTCCE-------------EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEEC
T ss_pred             EEEEECCCCcE-------------eeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeec
Confidence            99999987642             1111111       111224566  888887765 579999999999999888763


Q ss_pred             ccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEee-----cccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCc
Q 009993          276 SDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVN-----GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC  349 (520)
Q Consensus       276 ~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~-----~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~  349 (520)
                      .............++..+ ||.+.+++...........     ..+...+....+.+++..+.+.  ++.+++++.....
T Consensus       165 ~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~  242 (368)
T d1mdah_         165 ASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAG  242 (368)
T ss_dssp             SSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSC
T ss_pred             cCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCc
Confidence            332221223344455555 8888888877654332221     1234455567777777665543  4556677765542


Q ss_pred             cccceeeeeeecC------------CcCCEEEEEecCCEEEEEeCC---------CcEEEEeCCcccccCCCCCCCceee
Q 009993          350 TEANVLLVATWIP------------HTGPVNSLAFEFPWLVSAAGD---------GKLSLIDVRKLLRSGRPTSGKRVSR  408 (520)
Q Consensus       350 ~~~~~~~~~~~~~------------h~~~v~~l~~~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~~~~~~  408 (520)
                      ..    .......            .......+..+...++....+         ..|.+||..++.....         
T Consensus       243 ~~----~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~---------  309 (368)
T d1mdah_         243 AT----MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP---------  309 (368)
T ss_dssp             CE----EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC---------
T ss_pred             eE----EEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEE---------
Confidence            11    1111111            111223333344444443221         3588999987532211         


Q ss_pred             eeecCCCcccccCcceeeEEEEecCC--EEEEecCCCeEEEEeCCchHhHH
Q 009993          409 VIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIE  457 (520)
Q Consensus       409 ~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~~~~~  457 (520)
                               ...++...-.+++++++  .++++..|+.|++||..+++.+.
T Consensus       310 ---------~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~  351 (368)
T d1mdah_         310 ---------ISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS  351 (368)
T ss_dssp             ---------CEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred             ---------ecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEE
Confidence                     11222333456777776  46788889999999999887543

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=6.3e-13  Score=79.75  Aligned_cols=40  Identities=43%  Similarity=0.543  Sum_probs=38.7

Q ss_pred             cCCCHHHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchh
Q 009993           65 TDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAW  104 (520)
Q Consensus        65 ~~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW  104 (520)
                      ..||+|++.+||+||++++|.++++|||+|+++++++.+|
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence            5799999999999999999999999999999999999988

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.30  E-value=4.2e-13  Score=99.97  Aligned_cols=53  Identities=25%  Similarity=0.345  Sum_probs=48.0

Q ss_pred             cccccccCCCHHHHHHHccCCChhhhHHHhhhhhhHHHhhc-Ccchhhhhhhhh
Q 009993           59 LHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLAS-DHHAWKEFYCER  111 (520)
Q Consensus        59 ~~~~~~~~LP~el~~~i~~~L~~~~l~~~s~v~~~~~~~~~-~~~lW~~~~~~~  111 (520)
                      +++||++.||+||+.+||+|||+.+|+++++|||.|+.++. ++.+|+.++...
T Consensus         1 lk~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l~~~~   54 (100)
T d1nexb1           1 LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE   54 (100)
T ss_dssp             CCCCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHHHHHT
T ss_pred             CCCCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            58999999999999999999999999999999999999874 568999976543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.29  E-value=7.4e-12  Score=118.21  Aligned_cols=303  Identities=13%  Similarity=0.004  Sum_probs=179.9

Q ss_pred             EEEEeCCCeEEEEECCCCcEEEEeCC------------------------------CCceEEEE--ecCCCEEEEEe-CC
Q 009993          157 LFTSGYDSIVRMWHLEDGFSIASSKP------------------------------LGCTIRAV--AADKKLLVAGG-TD  203 (520)
Q Consensus       157 l~sgs~dg~v~vwd~~~~~~~~~~~~------------------------------~~~~v~~~--~~~~~~l~sg~-~d  203 (520)
                      ++||+.+|.|+||++.+++.++++..                              |.......  .+||++|++.. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            66888999999999999988877532                              11112222  38899886654 67


Q ss_pred             CcEEEEEcccCcceeeeccCCccccceEEe-ccCCCCeEEEEE--cCC--EEEEEecCC-----------------eEEE
Q 009993          204 GFIHCWRAVEVLPHLFDISGSEKQNTQFRL-WEHEGPITSLAL--DLT--RIYSGSWDM-----------------TVRV  261 (520)
Q Consensus       204 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~--~~~--~l~s~s~dg-----------------~v~i  261 (520)
                      +.|.++|+.+.+             ....+ ..+...+..+++  +++  +++..+.+.                 .+..
T Consensus        94 ~rVavIDl~t~k-------------~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~  160 (441)
T d1qnia2          94 TRVARIRLDIMK-------------TDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTA  160 (441)
T ss_dssp             TEEEEEETTTTE-------------EEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEE
T ss_pred             CEEEEEECCCCc-------------EeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEe
Confidence            899999998763             11222 245667888888  565  444444332                 2355


Q ss_pred             EECCCCcEEEEeeeccCE--EEEeeCCCEEEEEc-C-CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCC
Q 009993          262 WDRALLKCLKVLRHSDWV--YGLAPHDTTVASTS-G-SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED  337 (520)
Q Consensus       262 wd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~-d-~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d  337 (520)
                      +|..+.+....+......  ..+.++++++++++ + ..+..++..+......+..  ......+.++|+|+++..+ .+
T Consensus       161 iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v--~n~p~~~~~~~dGk~~~v~-~~  237 (441)
T d1qnia2         161 IDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVV--FNVERIAAAVKAGNFKTIG-DS  237 (441)
T ss_dssp             EETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEE--EEHHHHHHHHHTTCCBCCT-TC
T ss_pred             ecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEe--CCccceEEEecCCCEEEeC-CC
Confidence            888888888777643333  34459999988877 4 3444445444433333221  1112234567899877654 46


Q ss_pred             CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEE-EEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCC
Q 009993          338 GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWL-VSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEP  414 (520)
Q Consensus       338 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  414 (520)
                      +.+.+++....      ..+..+..... ...+.++|  +++ +++..+++|.|||+.+.................  +.
T Consensus       238 ~v~vvd~~~~~------~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~--~~  308 (441)
T d1qnia2         238 KVPVVDGRGES------EFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVA--EP  308 (441)
T ss_dssp             CCCEEECSSSC------SSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEE--CC
T ss_pred             CcEEEEcccCC------ceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEe--ec
Confidence            67777766554      34445544443 46678866  555 566789999999998764432211111100000  00


Q ss_pred             CcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhccccc--------chhhhhccceeeeccCCC
Q 009993          415 PQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRL--------ENRMRRRKLQTEMSSKGG  486 (520)
Q Consensus       415 ~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~s~~g~  486 (520)
                      .    .+....-.+++..+..+.+...|..|..|++.....  ..... .....        ...+........++|||+
T Consensus       309 ~----~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~--~~~~~-~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk  381 (441)
T d1qnia2         309 E----LGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIK--HYNGD-RVNYIRQKLDVQYQPGHNHASLTESRDADGK  381 (441)
T ss_dssp             B----CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHH--HHTTC-CCCCEEEEEECSSCEEEEEETTTTSTTCCCC
T ss_pred             c----cccCcccceecCCceEEEcccccceEEEeccchhhh--hhccC-CCceeEeccccccCCCCCccccccccCCCCc
Confidence            0    011111234444455888889999999999964322  11111 11000        134455567778999999


Q ss_pred             ccccc
Q 009993          487 RTDQC  491 (520)
Q Consensus       487 ~~~~~  491 (520)
                      ++++.
T Consensus       382 ~l~s~  386 (441)
T d1qnia2         382 WLVVL  386 (441)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            99996

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=4.6e-13  Score=103.32  Aligned_cols=57  Identities=32%  Similarity=0.379  Sum_probs=52.3

Q ss_pred             ccCcccccccCCCH----HHHHHHccCCChhhhHHHhhhhhhHHHhhcCcchhhhhhhhhc
Q 009993           56 LSNLHRSTITDLPP----ALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERW  112 (520)
Q Consensus        56 ~~~~~~~~~~~LP~----el~~~i~~~L~~~~l~~~s~v~~~~~~~~~~~~lW~~~~~~~~  112 (520)
                      .+.+++||++.||.    ||+++||+|||+.+|+++++|||.|+.+++++.+|+.++...+
T Consensus         3 ~~~l~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~~~   63 (118)
T d1p22a1           3 AIMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMV   63 (118)
T ss_dssp             CCCSCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHcccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhhc
Confidence            46789999999995    9999999999999999999999999999999999999765544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.25  E-value=1.1e-10  Score=110.25  Aligned_cols=243  Identities=9%  Similarity=-0.086  Sum_probs=151.8

Q ss_pred             HhhhhhccccccEEEEEEccCCCEEEEEe----------CCCeEEEEECCCCcEEEEeCCCC---------ceEEEEecC
Q 009993          133 ELIDVLYGHTEAVLTVFVLASAKLLFTSG----------YDSIVRMWHLEDGFSIASSKPLG---------CTIRAVAAD  193 (520)
Q Consensus       133 ~~~~~l~~h~~~V~~l~~~~~~~~l~sgs----------~dg~v~vwd~~~~~~~~~~~~~~---------~~v~~~~~~  193 (520)
                      +++.++.++...  .++|+|||+.|++++          .|++|.+||..+++.+..+..+.         ..-.++++|
T Consensus        57 ~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpD  134 (368)
T d1mdah_          57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS  134 (368)
T ss_dssp             EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT
T ss_pred             cEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCC
Confidence            445555666554  578999999888754          47889999999999887764221         123578999


Q ss_pred             CCEEEEEe-CCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEE
Q 009993          194 KKLLVAGG-TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKV  272 (520)
Q Consensus       194 ~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~  272 (520)
                      |++++++. .++.+.+||+.++.             ....+..+.... ........+++.+.||++.+++.........
T Consensus       135 Gk~l~va~~~~~~v~~~d~~~~~-------------~~~~~~~~~~~~-~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~  200 (368)
T d1mdah_         135 SACLLFFLFGSSAAAGLSVPGAS-------------DDQLTKSASCFH-IHPGAAATHYLGSCPASLAASDLAAAPAAAG  200 (368)
T ss_dssp             SSCEEEEECSSSCEEEEEETTTE-------------EEEEEECSSCCC-CEEEETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred             CCEEEEEeCCCCeEEEEECCCCc-------------EeEEeeccCcce-EccCCCceEEEEcCCCCEEEEEecCCceeee
Confidence            99988776 57999999998763             222222232221 1112456778888999999998875543322


Q ss_pred             ee-------eccCEEEEeeC-CCEEEEEcCCeEEEEECCCCeeeEEeec-c----------cccceEEEEecCCCCEEEE
Q 009993          273 LR-------HSDWVYGLAPH-DTTVASTSGSDVYIWDTNSGCLLTVVNG-A----------HVGNTKSLARSHTGDFLFT  333 (520)
Q Consensus       273 ~~-------~~~~v~~~~~~-~~~l~~~~d~~i~iwd~~~~~~~~~~~~-~----------~~~~i~~l~~s~~~~~l~t  333 (520)
                      ..       +...+....+. ....+...++.+++++...+........ .          .......++++|++..++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v  280 (368)
T d1mdah_         201 IVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI  280 (368)
T ss_dssp             ECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             eeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEE
Confidence            21       11222223322 2233333366677777665544322210 0          1122345788899887766


Q ss_pred             EeCC---------CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--C--EEEEEeCCCcEEEEeCCcccccC
Q 009993          334 GGED---------GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P--WLVSAAGDGKLSLIDVRKLLRSG  398 (520)
Q Consensus       334 g~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~  398 (520)
                      ...+         ..|.+||..++      +.+.++. +...+.+++|+|  +  .++++..|+.|++||..+++...
T Consensus       281 ~~~~~~~~~~~~~~~v~v~D~~t~------~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~  351 (368)
T d1mdah_         281 LTVEHSRSCLAAAENTSSVTASVG------QTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS  351 (368)
T ss_dssp             EEEECSSCTTSCEEEEEEEESSSC------CEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred             EecCCCceeecCCceEEEEECCCC------cEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEE
Confidence            5332         35889999988      4444443 335688899975  3  35667789999999999865443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.13  E-value=5.5e-09  Score=101.78  Aligned_cols=130  Identities=11%  Similarity=0.100  Sum_probs=95.0

Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCC-----CCceE--EEEecCCCEEEEEeC---------CCcEEEEE
Q 009993          147 TVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP-----LGCTI--RAVAADKKLLVAGGT---------DGFIHCWR  210 (520)
Q Consensus       147 ~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-----~~~~v--~~~~~~~~~l~sg~~---------dg~i~vwd  210 (520)
                      .+.|.+++++++.  .|+.+.+||+.+++....+..     |...+  ..++||+++|+.++.         ++.+.+||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            4678899987764  478899999999987665543     33334  456799999998753         56788999


Q ss_pred             cccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee--ecc---------
Q 009993          211 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSD---------  277 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~---------  277 (520)
                      +.++.              ...+..|...+....|  ||+.++.. .++.+.+|+..+++..+...  ...         
T Consensus        99 ~~~~~--------------~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~  163 (470)
T d2bgra1          99 LNKRQ--------------LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDW  163 (470)
T ss_dssp             TTTTE--------------ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCH
T ss_pred             CCCCc--------------ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccce
Confidence            98763              3345678888999999  88888885 56789999999887665442  111         


Q ss_pred             ----------CEEEEeeCCCEEEEEc
Q 009993          278 ----------WVYGLAPHDTTVASTS  293 (520)
Q Consensus       278 ----------~v~~~~~~~~~l~~~~  293 (520)
                                .....+|+|+.++...
T Consensus       164 ~~~~~~~~~~~~~~wSPDGk~ia~~~  189 (470)
T d2bgra1         164 VYEEEVFSAYSALWWSPNGTFLAYAQ  189 (470)
T ss_dssp             HHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             eeeeeecCCccccEECCCCCccceeE
Confidence                      1123569999998876

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.03  E-value=1.4e-07  Score=85.72  Aligned_cols=224  Identities=9%  Similarity=-0.066  Sum_probs=145.1

Q ss_pred             cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccC
Q 009993          144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISG  223 (520)
Q Consensus       144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~  223 (520)
                      .+..++++|||+++++...+++|..|+.........-........++.++++++++...++.+..|+.......      
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~------  102 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT------  102 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC------
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccc------
Confidence            47789999999999999999999988865443332222333344566799999999988899988887554211      


Q ss_pred             CccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee-----------eccCEEEEeeCCCEEE
Q 009993          224 SEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-----------HSDWVYGLAPHDTTVA  290 (520)
Q Consensus       224 ~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-----------~~~~v~~~~~~~~~l~  290 (520)
                          ...............+.+  +++++++.+.++.+..+|..++.......           .......+..++..++
T Consensus       103 ----~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~  178 (302)
T d2p4oa1         103 ----VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLY  178 (302)
T ss_dssp             ----EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEE
T ss_pred             ----eeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCcee
Confidence                111111234456788888  56667777788899999988765443322           1234556666666665


Q ss_pred             EEc--CCeEEEEECCCCeeeEEee-cccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCE
Q 009993          291 STS--GSDVYIWDTNSGCLLTVVN-GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPV  367 (520)
Q Consensus       291 ~~~--d~~i~iwd~~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v  367 (520)
                      .+.  .+.|+.++........... .........+++.++|+++++...++.|..++.....     ..+......-...
T Consensus       179 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~-----~~~~~~~~~~~~p  253 (302)
T d2p4oa1         179 VSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRST-----TIIAQAEQGVIGS  253 (302)
T ss_dssp             EEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCE-----EEEECGGGTCTTE
T ss_pred             eecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCE-----EEEEecCCCCCCc
Confidence            554  7889988877643221111 0123445679999999988888889999998776541     2233333344568


Q ss_pred             EEEEec---C--CEEEEEeC
Q 009993          368 NSLAFE---F--PWLVSAAG  382 (520)
Q Consensus       368 ~~l~~~---~--~~l~s~s~  382 (520)
                      ++++|.   +  +.|+.++.
T Consensus       254 t~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         254 TAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             EEEEECCSTTTTTEEEEEEC
T ss_pred             eEEEEcCCCCCCCEEEEECC
Confidence            999994   2  45555443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.02  E-value=8.3e-11  Score=110.96  Aligned_cols=282  Identities=10%  Similarity=0.012  Sum_probs=160.5

Q ss_pred             cccccEEEEEEccCCCEEEEE-eCCCeEEEEECCCCcEEEEeC-CCCceE--EEEecCCC--EEEEEeCCCc--------
Q 009993          140 GHTEAVLTVFVLASAKLLFTS-GYDSIVRMWHLEDGFSIASSK-PLGCTI--RAVAADKK--LLVAGGTDGF--------  205 (520)
Q Consensus       140 ~h~~~V~~l~~~~~~~~l~sg-s~dg~v~vwd~~~~~~~~~~~-~~~~~v--~~~~~~~~--~l~sg~~dg~--------  205 (520)
                      .|........++|||++|+.. ..++.|.++|+.+++....+. ++....  .+++++++  +++..+.+..        
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~  148 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD  148 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence            456666777778999988665 468899999999998877653 233333  46667887  4444443321        


Q ss_pred             ---------EEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCC-eEEEEECCCCcEEEEe
Q 009993          206 ---------IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM-TVRVWDRALLKCLKVL  273 (520)
Q Consensus       206 ---------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg-~v~iwd~~~~~~~~~~  273 (520)
                               +..+|..+.             ........ .+....+.+  +++++++.+.+. .+..++..+......+
T Consensus       149 ~~~~~~~~~~~~iD~~t~-------------~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i  214 (441)
T d1qnia2         149 FSLDNSYTMFTAIDAETM-------------DVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWV  214 (441)
T ss_dssp             CCGGGEEEEEEEEETTTC-------------SEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEE
T ss_pred             cccccccceEEeecCccc-------------eeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEE
Confidence                     122333322             12222221 223455666  778887777653 3433444333333222


Q ss_pred             eec--cCEEEEeeCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEE-EEeCCCeEEEEEcccCcc
Q 009993          274 RHS--DWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLF-TGGEDGAIHMYEIINDCT  350 (520)
Q Consensus       274 ~~~--~~v~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~-tg~~dg~i~iwd~~~~~~  350 (520)
                      ...  .....+.++|+++..+.++.+.+++......+..+..  ......+.++|||++++ ++..+++|.+||+.+...
T Consensus       215 ~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPv--gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~  292 (441)
T d1qnia2         215 VVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPV--PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDD  292 (441)
T ss_dssp             EEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECC--BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHH
T ss_pred             EeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeC--CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhh
Confidence            210  0111123788888777788888888777777777763  33467899999999875 567799999999876421


Q ss_pred             cc--ceeeeeeecCC---cCCEEEEEecC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcc
Q 009993          351 EA--NVLLVATWIPH---TGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE  423 (520)
Q Consensus       351 ~~--~~~~~~~~~~h---~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (520)
                      ..  .......+.++   .-.....+|++  ..+.+.+.|..|..|++..............+.....+.    ...||.
T Consensus       293 ~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~----y~~GH~  368 (441)
T d1qnia2         293 LFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQ----YQPGHN  368 (441)
T ss_dssp             HTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS----SCEEEE
T ss_pred             HhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccc----cCCCCC
Confidence            00  00111111111   11234567876  466777889999999997543322222111111111111    123555


Q ss_pred             eeeEE--EEecCCEEEEecC
Q 009993          424 CNLLS--VDIGADRIVCGGE  441 (520)
Q Consensus       424 ~~v~~--~~~~~~~l~sg~~  441 (520)
                      ..+.+  ++++|++|++++.
T Consensus       369 ~~~~~~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         369 HASLTESRDADGKWLVVLSK  388 (441)
T ss_dssp             EETTTTSTTCCCCEEEEEES
T ss_pred             ccccccccCCCCcEEEecCc
Confidence            54444  4467779999943

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.95  E-value=1.7e-08  Score=98.15  Aligned_cols=79  Identities=4%  Similarity=-0.062  Sum_probs=62.1

Q ss_pred             hhhccccccEEEEEEccCCCEEEEEeC---------CCeEEEEECCCCcEEEEeCCCCceE--EEEecCCCEEEEEeCCC
Q 009993          136 DVLYGHTEAVLTVFVLASAKLLFTSGY---------DSIVRMWHLEDGFSIASSKPLGCTI--RAVAADKKLLVAGGTDG  204 (520)
Q Consensus       136 ~~l~~h~~~V~~l~~~~~~~~l~sgs~---------dg~v~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sg~~dg  204 (520)
                      .+|.+|...|.++.|+|||++|+.++.         ++.+.+||+.+++. ..+..+...+  ..++|||+.+|.. .++
T Consensus        55 ~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~  132 (470)
T d2bgra1          55 STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNN  132 (470)
T ss_dssp             TTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETT
T ss_pred             hhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-ecc
Confidence            467788899999999999999998753         57789999998864 4455555444  4567999999985 467


Q ss_pred             cEEEEEcccCcc
Q 009993          205 FIHCWRAVEVLP  216 (520)
Q Consensus       205 ~i~vwd~~~~~~  216 (520)
                      .+.+|+..++..
T Consensus       133 ~l~~~~~~~g~~  144 (470)
T d2bgra1         133 DIYVKIEPNLPS  144 (470)
T ss_dssp             EEEEESSTTSCC
T ss_pred             cceEEECCCCce
Confidence            899999887754

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.79  E-value=2.3e-05  Score=69.58  Aligned_cols=227  Identities=13%  Similarity=0.110  Sum_probs=144.0

Q ss_pred             cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCC--------ceEEEEecC-CCEEEEE-eCCCcEEEEEccc
Q 009993          144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG--------CTIRAVAAD-KKLLVAG-GTDGFIHCWRAVE  213 (520)
Q Consensus       144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~--------~~v~~~~~~-~~~l~sg-~~dg~i~vwd~~~  213 (520)
                      .-..++++++|+++++-..+..|++||.+ |+.+..+....        ..-..+..+ +..+++. +.++.|..++...
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence            35799999999988887788999999964 66666553210        111222333 3344333 3345566655422


Q ss_pred             CcceeeeccCCccccceEEe-ccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEee---eccCEEEEe--eC
Q 009993          214 VLPHLFDISGSEKQNTQFRL-WEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA--PH  285 (520)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~--~~  285 (520)
                      .              ....+ .........+++  ++..+++....+.+.+++. +++.+..+.   +......+.  ++
T Consensus       103 ~--------------~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~  167 (279)
T d1q7fa_         103 Q--------------FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDK  167 (279)
T ss_dssp             C--------------EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSS
T ss_pred             c--------------ceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccc
Confidence            1              11112 123455667777  5566777667778888885 456666654   334445544  67


Q ss_pred             CCEEEEEc-CCeEEEEECCCCeeeEEee-cccccceEEEEecCCCCEEEEEeC-CCeEEEEEcccCccccceeeeeeec-
Q 009993          286 DTTVASTS-GSDVYIWDTNSGCLLTVVN-GAHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDCTEANVLLVATWI-  361 (520)
Q Consensus       286 ~~~l~~~~-d~~i~iwd~~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~~~-  361 (520)
                      ++.+++.. .+.|++||.. ++.+..+. .+.......+++.++|+++++-.. ++.|.+|+.. +      ..+.++. 
T Consensus       168 g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G------~~~~~~~~  239 (279)
T d1q7fa_         168 QEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G------QLISALES  239 (279)
T ss_dssp             SEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S------CEEEEEEE
T ss_pred             eeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-C------CEEEEEeC
Confidence            77777777 7899999975 45555553 234556789999999997777544 4579999853 4      2333332 


Q ss_pred             -CCcCCEEEEEecC-CEEEEEeCCCcEEEEeCCcc
Q 009993          362 -PHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       362 -~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~  394 (520)
                       ........|++++ ..|++++.++.|++|.....
T Consensus       240 ~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         240 KVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             SSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCC
T ss_pred             CCCCCCEeEEEEeCCCcEEEEeCCCeEEEEEeeee
Confidence             2234578888876 36777788999999998764

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.70  E-value=5.9e-06  Score=72.69  Aligned_cols=228  Identities=9%  Similarity=-0.044  Sum_probs=134.6

Q ss_pred             EEEEEEccCCCEEEEE-eCCCeEEEEECCCCcEEE-EeCC-CCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeec
Q 009993          145 VLTVFVLASAKLLFTS-GYDSIVRMWHLEDGFSIA-SSKP-LGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDI  221 (520)
Q Consensus       145 V~~l~~~~~~~~l~sg-s~dg~v~vwd~~~~~~~~-~~~~-~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  221 (520)
                      -..++++++|++.++. +..+.+..++........ ...+ +...-.++.++++++++....+.+++++-.+..      
T Consensus        16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~------   89 (260)
T d1rwia_          16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ------   89 (260)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC------
T ss_pred             CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccce------
Confidence            4799999999976654 445677777655433222 2222 222334667888887776666666655432221      


Q ss_pred             cCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEe-eeccCEE--EEeeCCCEEEEEc-CC
Q 009993          222 SGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL-RHSDWVY--GLAPHDTTVASTS-GS  295 (520)
Q Consensus       222 ~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~v~--~~~~~~~~l~~~~-d~  295 (520)
                             .. ..........++++  +++.+++-..+..+..++.......... .......  .+.++++++++.. ++
T Consensus        90 -------~~-~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~  161 (260)
T d1rwia_          90 -------TV-LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNN  161 (260)
T ss_dssp             -------EE-CCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGT
T ss_pred             -------ee-eeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccc
Confidence                   11 11122345678888  4566666556667777776554332221 1112223  3447888777766 78


Q ss_pred             eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-
Q 009993          296 DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-  374 (520)
Q Consensus       296 ~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-  374 (520)
                      .|..+|........ +..........+++.++|+++++....+.|..++.....      ........-.....|++++ 
T Consensus       162 ~i~~~d~~~~~~~~-~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~------~~~~~~~~~~~P~~i~~d~~  234 (260)
T d1rwia_         162 RVVKLEAESNNQVV-LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT------STVLPFTGLNTPLAVAVDSD  234 (260)
T ss_dssp             EEEEECTTTCCEEE-CCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC------CEECCCCSCCCEEEEEECTT
T ss_pred             cccccccccceeee-eeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe------EEEEccCCCCCeEEEEEeCC
Confidence            89999987654433 322355667899999999988888888889888765541      1111122234678899965 


Q ss_pred             -CEEEEEeCCCcEEEEeCCc
Q 009993          375 -PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       375 -~~l~s~s~dg~i~vwd~~~  393 (520)
                       ..+++-..+++|+..+...
T Consensus       235 g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         235 RTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             CCEEEEEGGGTEEEEECCCG
T ss_pred             CCEEEEECCCCEEEEEeCCC
Confidence             4555556667676665543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.62  E-value=3.3e-05  Score=69.72  Aligned_cols=232  Identities=8%  Similarity=0.017  Sum_probs=137.9

Q ss_pred             EEEEEEccCCCEEEEEeC-------CCeEEEEECCCCcEEEEeCCCC------ceEEEEecCCCEEEEEeCCCcEEEEEc
Q 009993          145 VLTVFVLASAKLLFTSGY-------DSIVRMWHLEDGFSIASSKPLG------CTIRAVAADKKLLVAGGTDGFIHCWRA  211 (520)
Q Consensus       145 V~~l~~~~~~~~l~sgs~-------dg~v~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~l~sg~~dg~i~vwd~  211 (520)
                      .-.++|.++|+++++...       ++.|..||..++..........      ..-..+.++++.++++...+.|...+.
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~   99 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT   99 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence            345689999997776433       4678899988876544332211      123456688988888887777888887


Q ss_pred             ccCcceeeeccCCccccceEEeccC-CCCeEEEEE--cCCEEEEEec---------------CCeEEEEECCCCcEEEEe
Q 009993          212 VEVLPHLFDISGSEKQNTQFRLWEH-EGPITSLAL--DLTRIYSGSW---------------DMTVRVWDRALLKCLKVL  273 (520)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~--~~~~l~s~s~---------------dg~v~iwd~~~~~~~~~~  273 (520)
                      ............          .+. -...+.+++  +|+..++-..               +|.|..++. .++.....
T Consensus       100 ~g~~~~~~~~~~----------~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~  168 (314)
T d1pjxa_         100 DGTFEEIAKKDS----------EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVD  168 (314)
T ss_dssp             TSCEEECCSBCT----------TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEE
T ss_pred             CCcEEEEEeccc----------cccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEee
Confidence            554221110000          000 112456777  4555554321               234444443 23333333


Q ss_pred             eeccCEEE--EeeCCC----EEEEE-c-CCeEEEEECCCCeeeE------EeecccccceEEEEecCCCCEEEEEeCCCe
Q 009993          274 RHSDWVYG--LAPHDT----TVAST-S-GSDVYIWDTNSGCLLT------VVNGAHVGNTKSLARSHTGDFLFTGGEDGA  339 (520)
Q Consensus       274 ~~~~~v~~--~~~~~~----~l~~~-~-d~~i~iwd~~~~~~~~------~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~  339 (520)
                      ..-..-+.  +.+++.    .|+++ + .+.|..||+.....+.      .+........-.+++.++|++.++....+.
T Consensus       169 ~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~  248 (314)
T d1pjxa_         169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH  248 (314)
T ss_dssp             EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred             CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCE
Confidence            32222233  335543    44444 4 6889998875432221      122122334568999999998888888899


Q ss_pred             EEEEEcccCccccceeeeeeecCCcCCEEEEEecC--C-EEEEEeCCCcEEEEeCCc
Q 009993          340 IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P-WLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       340 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~s~dg~i~vwd~~~  393 (520)
                      |.+||.+.+      .....+......+++++|.|  + .+++.+.+|.|...++..
T Consensus       249 I~~~dp~~g------~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         249 IEVFGPDGG------QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEECTTCB------SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEeCCCC------EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            999998877      34444445556789999976  3 556777788888888764

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.56  E-value=1.3e-05  Score=74.40  Aligned_cols=252  Identities=12%  Similarity=0.130  Sum_probs=136.8

Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEe----CCCCceEEEEecCCCEEE--EEe-CCCcEEEEEccc
Q 009993          141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS----KPLGCTIRAVAADKKLLV--AGG-TDGFIHCWRAVE  213 (520)
Q Consensus       141 h~~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~----~~~~~~v~~~~~~~~~l~--sg~-~dg~i~vwd~~~  213 (520)
                      ....+..|+|+|++++|+++.. +.+..|.+.....+...    .+....-.+++++++.++  ++. ..+.|..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            3445567999999999988765 56778877543222211    112222234456776433  222 245666555432


Q ss_pred             Ccc--eeeeccCCccc-c-ceEEeccCCCCeEEEEE--cCCEEEEEec-CCeEEEEECCCC-cEEEE--ee---eccCEE
Q 009993          214 VLP--HLFDISGSEKQ-N-TQFRLWEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDRALL-KCLKV--LR---HSDWVY  280 (520)
Q Consensus       214 ~~~--~~~~~~~~~~~-~-~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg~v~iwd~~~~-~~~~~--~~---~~~~v~  280 (520)
                      ...  ..+........ . ...........+.++.|  +++++++++. ...|.+|+.... .....  ..   ......
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr  196 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence            111  11111111000 0 11111123345778888  7788877764 457888876543 22211  11   223344


Q ss_pred             EEe--eCCCEEEEEc--CCeEEEEECCCCeeeEEee--c----------------ccccceEEEEecCCCCEEEEEeC--
Q 009993          281 GLA--PHDTTVASTS--GSDVYIWDTNSGCLLTVVN--G----------------AHVGNTKSLARSHTGDFLFTGGE--  336 (520)
Q Consensus       281 ~~~--~~~~~l~~~~--d~~i~iwd~~~~~~~~~~~--~----------------~~~~~i~~l~~s~~~~~l~tg~~--  336 (520)
                      .+.  ++++++++..  +++|.+|+...+.......  .                .+......+.++|+|++|+++..  
T Consensus       197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~  276 (365)
T d1jofa_         197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccC
Confidence            444  8898887766  7899999987654321111  0                11223567899999999887643  


Q ss_pred             ----CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC---CEEEEE-eCCCcEEEEeCCc
Q 009993          337 ----DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSA-AGDGKLSLIDVRK  393 (520)
Q Consensus       337 ----dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~-s~dg~i~vwd~~~  393 (520)
                          .+.|..|++...........+...........+++++|   ++|+++ ..++.|.+|+++.
T Consensus       277 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             CCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence                23477777765432221122222223334557788864   566555 5679999998764

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=5.4e-05  Score=66.45  Aligned_cols=219  Identities=10%  Similarity=0.007  Sum_probs=125.4

Q ss_pred             hhhhccccccEEEEEEccCCCEEEEEeCCC---eEEEEECCCCcEEEEeCC-CCceEEEEecCCCEEEEEeC-CCcEEEE
Q 009993          135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDS---IVRMWHLEDGFSIASSKP-LGCTIRAVAADKKLLVAGGT-DGFIHCW  209 (520)
Q Consensus       135 ~~~l~~h~~~V~~l~~~~~~~~l~sgs~dg---~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sg~~-dg~i~vw  209 (520)
                      .+.+..+...+..-+|||||+.||-.....   .+.+.+..++........ -......++|++..++.... ++...++
T Consensus        31 ~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~  110 (269)
T d2hqsa1          31 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY  110 (269)
T ss_dssp             CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             cEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCcccee
Confidence            344455677788999999999998765433   466677776655433332 23344566799998887654 3333333


Q ss_pred             EcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCE-EEEEecCC--eEEEEECCCCcEEEEeeeccCEE--EE
Q 009993          210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTR-IYSGSWDM--TVRVWDRALLKCLKVLRHSDWVY--GL  282 (520)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~-l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~v~--~~  282 (520)
                      ......            .................+  ++.. +++...+|  .|...+...+.............  .+
T Consensus       111 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  178 (269)
T d2hqsa1         111 VMDLAS------------GQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADV  178 (269)
T ss_dssp             EEETTT------------CCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEE
T ss_pred             eccccc------------ccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeeccccccccccc
Confidence            332221            111222222333333333  4443 44444444  45666666654443333333332  34


Q ss_pred             eeCCCEEEEEc-C-Ce--EEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeC---CCeEEEEEcccCcccccee
Q 009993          283 APHDTTVASTS-G-SD--VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE---DGAIHMYEIINDCTEANVL  355 (520)
Q Consensus       283 ~~~~~~l~~~~-d-~~--i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~---dg~i~iwd~~~~~~~~~~~  355 (520)
                      +++++.++..+ + +.  +.+.|...+... .+  .+........|+|||+.|+-.+.   ...|+++++..+      .
T Consensus       179 spdg~~~~~~~~~~~~~~i~~~~~~~~~~~-~~--~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~------~  249 (269)
T d2hqsa1         179 SSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VL--SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR------F  249 (269)
T ss_dssp             CTTSSEEEEEEECSSCEEEEEEETTTCCEE-EC--CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC------C
T ss_pred             ccccceeEEEeecCCceeeeEeecccccce-Ee--ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC------C
Confidence            48898888776 3 43  555566555432 22  24556678899999998875443   346888998776      2


Q ss_pred             eeeeecCCcCCEEEEEecCC
Q 009993          356 LVATWIPHTGPVNSLAFEFP  375 (520)
Q Consensus       356 ~~~~~~~h~~~v~~l~~~~~  375 (520)
                       ...+....+.+...+|+|.
T Consensus       250 -~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         250 -KARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             -EEECCCSSSEEEEEEECCC
T ss_pred             -EEEEeCCCCcEEeEEeCCC
Confidence             3344455667788888874

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.47  E-value=3.7e-05  Score=69.05  Aligned_cols=229  Identities=13%  Similarity=0.003  Sum_probs=141.4

Q ss_pred             CeEEEEE--cCCEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCC--eeeEEe
Q 009993          239 PITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSG--CLLTVV  311 (520)
Q Consensus       239 ~v~~l~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~--~~~~~~  311 (520)
                      .+..+++  ||+++++...+++|..||.. ++..........+.++.  ++++++++.. ++.+..++....  ......
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~  107 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL  107 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeecc
Confidence            5778888  88888898889999999865 44443444556666666  8889888877 677777776433  222222


Q ss_pred             ecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccce----eeeeeecCCcCCEEEEEecCCE-EEEEeCCCcE
Q 009993          312 NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV----LLVATWIPHTGPVNSLAFEFPW-LVSAAGDGKL  386 (520)
Q Consensus       312 ~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~----~~~~~~~~h~~~v~~l~~~~~~-l~s~s~dg~i  386 (520)
                      ........+.+++.++++++++-+.++.+..++...+......    ...............+.+++.. +++.+..+.|
T Consensus       108 ~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i  187 (302)
T d2p4oa1         108 TLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLL  187 (302)
T ss_dssp             ECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEE
T ss_pred             ccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeE
Confidence            2234566889999999999998888998988887766211000    0000111223356778887764 4555667888


Q ss_pred             EEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchHhHHHHhhhhccc
Q 009993          387 SLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGI  466 (520)
Q Consensus       387 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~~~~  466 (520)
                      ..+++.......               .......+....-++++.+++++++...++.|..++.......         .
T Consensus       188 ~~~~~~~~~~~~---------------~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~---------~  243 (302)
T d2p4oa1         188 LRIPVDSTDKPG---------------EPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTI---------I  243 (302)
T ss_dssp             EEEEBCTTSCBC---------------CCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEE---------E
T ss_pred             Eecccccccccc---------------ccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEE---------E
Confidence            888876532111               0000111222334677778888888888898988876532110         0


Q ss_pred             ccchhhhhccceeee---ccCCCcccccc
Q 009993          467 RLENRMRRRKLQTEM---SSKGGRTDQCS  492 (520)
Q Consensus       467 ~~~~~~~~~~~~~~~---s~~g~~~~~~s  492 (520)
                      .....--.....++|   ++|++.+..++
T Consensus       244 ~~~~~~~~~pt~vafg~~~~D~~~Lyvtt  272 (302)
T d2p4oa1         244 AQAEQGVIGSTAVAFGQTEGDCTAIYVVT  272 (302)
T ss_dssp             ECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             EecCCCCCCceEEEEcCCCCCCCEEEEEC
Confidence            000111234678899   67888776554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.46  E-value=0.00024  Score=62.74  Aligned_cols=232  Identities=12%  Similarity=0.129  Sum_probs=133.5

Q ss_pred             EEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--c-CCEEEE-EecCCeEEEEE
Q 009993          188 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D-LTRIYS-GSWDMTVRVWD  263 (520)
Q Consensus       188 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~-~~~l~s-~s~dg~v~iwd  263 (520)
                      .++.++++.+++-..++.|++||........+.....        ..+.......+++  + +..+++ .+.++.|..++
T Consensus        28 vavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~--------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~   99 (279)
T d1q7fa_          28 VAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGK--------RDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN   99 (279)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSS--------STTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             EEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCC--------CcccccccccccccccccccceeccCCcccccccc
Confidence            3556777777776677788888754221111100000        0011123344454  2 233333 34456777777


Q ss_pred             CCCCcEEEEee--eccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEee-cccccceEEEEecCCCCEEEEEeCC
Q 009993          264 RALLKCLKVLR--HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVN-GAHVGNTKSLARSHTGDFLFTGGED  337 (520)
Q Consensus       264 ~~~~~~~~~~~--~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~tg~~d  337 (520)
                      . .++....+.  .......+.  +++.++++.. .+.+.+++.. ++.+..+. ..+......+++.+++..+++....
T Consensus       100 ~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~  177 (279)
T d1q7fa_         100 Q-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA  177 (279)
T ss_dssp             T-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred             c-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccc
Confidence            5 455555554  233344444  6777777766 6778888865 45555542 2456678899999999998888889


Q ss_pred             CeEEEEEcccCccccceeeeeee--cCCcCCEEEEEecC--CEEEEEeC-CCcEEEEeCCcccccCCCCCCCceeeeeec
Q 009993          338 GAIHMYEIINDCTEANVLLVATW--IPHTGPVNSLAFEF--PWLVSAAG-DGKLSLIDVRKLLRSGRPTSGKRVSRVIEV  412 (520)
Q Consensus       338 g~i~iwd~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~--~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  412 (520)
                      +.|++||....       .+.++  .+.......|++++  +.+++-.. ++.|.+|+....          ....+.. 
T Consensus       178 ~~V~~~d~~G~-------~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~----------~~~~~~~-  239 (279)
T d1q7fa_         178 HCVKVFNYEGQ-------YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ----------LISALES-  239 (279)
T ss_dssp             TEEEEEETTCC-------EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC----------EEEEEEE-
T ss_pred             cceeeeecCCc-------eeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCC----------EEEEEeC-
Confidence            99999997544       33333  23455678899965  55555443 456999985421          1111110 


Q ss_pred             CCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCch
Q 009993          413 EPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       413 ~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~  453 (520)
                           ........-.++.+++.+ ++++.++.|++|.+...
T Consensus       240 -----~~~~~~p~~vav~~dG~l-~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         240 -----KVKHAQCFDVALMDDGSV-VLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             -----SSCCSCEEEEEEETTTEE-EEEETTTEEEEEECSCC
T ss_pred             -----CCCCCCEeEEEEeCCCcE-EEEeCCCeEEEEEeeee
Confidence                 011112233456666654 44567899999998764

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.43  E-value=6.7e-05  Score=65.66  Aligned_cols=187  Identities=11%  Similarity=0.020  Sum_probs=111.2

Q ss_pred             EEEEecCCCEEEEEe-CCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeEEEEE
Q 009993          187 IRAVAADKKLLVAGG-TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWD  263 (520)
Q Consensus       187 v~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v~iwd  263 (520)
                      -.++.++|+..++.. ..+.+..++......            ......+ ......+++  +++.+++....+.+++++
T Consensus        18 ~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~------------~~~~~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~   84 (260)
T d1rwia_          18 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGT------------TVLPFNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAA   84 (260)
T ss_dssp             EEEECTTCCEEEEECSSSCEEEEEC----CE------------EECCCCS-CCSCCCEEECTTCCEEEEETTTEEEEECT
T ss_pred             EEEEcCCCCEEEEEcCCCCEEEEEcCCCceE------------EEeccCC-ccCceEEEEcCCCCEEEeeeeeceeeeee
Confidence            345668888666544 446666665433211            1111111 123456667  556666666666676666


Q ss_pred             CCCCcEEEEeeeccCEEEEe--eCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeE
Q 009993          264 RALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI  340 (520)
Q Consensus       264 ~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i  340 (520)
                      -.+...+..........++.  ++++++++.. +..+..++........... ........+++.++++++++...++.|
T Consensus        85 ~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~~~v~~~~~~~i  163 (260)
T d1rwia_          85 GSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-TGLNDPDGVAVDNSGNVYVTDTDNNRV  163 (260)
T ss_dssp             TCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC-CSCCSCCEEEECTTCCEEEEEGGGTEE
T ss_pred             eccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeee-cccCCcceeeecCCCCEeeeccccccc
Confidence            55555443333334455665  6777777666 6778787776544322221 223455789999999988888888999


Q ss_pred             EEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993          341 HMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       341 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  393 (520)
                      ..++.....      ..............|++++  +++++....+.|..++...
T Consensus       164 ~~~d~~~~~------~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~  212 (260)
T d1rwia_         164 VKLEAESNN------QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS  212 (260)
T ss_dssp             EEECTTTCC------EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC
T ss_pred             cccccccce------eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCC
Confidence            999977652      2222224445678899965  5666666678888887654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.36  E-value=0.00029  Score=63.31  Aligned_cols=232  Identities=11%  Similarity=0.086  Sum_probs=128.6

Q ss_pred             EEecCCCEEEEEeC-------CCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecCCeE
Q 009993          189 AVAADKKLLVAGGT-------DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTV  259 (520)
Q Consensus       189 ~~~~~~~~l~sg~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~v  259 (520)
                      ++.++|+++++...       +|+|..||..++....+...         ......+.-..+.+  +++.++++...+.|
T Consensus        24 a~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~---------~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i   94 (314)
T d1pjxa_          24 VFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP---------EVNGYGGIPAGCQCDRDANQLFVADMRLGL   94 (314)
T ss_dssp             EECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC---------EETTEECCEEEEEECSSSSEEEEEETTTEE
T ss_pred             EEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECC---------ccccCCCcceeEEEeCCCCEEEEEECCCeE
Confidence            55678876665432       46677788766532221100         01111233567888  56788888877788


Q ss_pred             EEEECCCCcEEEEeee--cc---CEEE--EeeCCCEEEEEcC----------------CeEEEEECCCCeeeEEeecccc
Q 009993          260 RVWDRALLKCLKVLRH--SD---WVYG--LAPHDTTVASTSG----------------SDVYIWDTNSGCLLTVVNGAHV  316 (520)
Q Consensus       260 ~iwd~~~~~~~~~~~~--~~---~v~~--~~~~~~~l~~~~d----------------~~i~iwd~~~~~~~~~~~~~~~  316 (520)
                      ...|............  ..   ..+.  +.++|++.++...                |.|+.++.. ++.....  ...
T Consensus        95 ~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~--~~~  171 (314)
T d1pjxa_          95 LVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD--TAF  171 (314)
T ss_dssp             EEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE--EEE
T ss_pred             EEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEee--CCc
Confidence            8888765533221111  11   1233  3477777776431                235555443 3322222  133


Q ss_pred             cceEEEEecCCCC-----EEEEEeCCCeEEEEEcccCccccceeeeeeecC-CcCCEEEEEecC--CEEEEEeCCCcEEE
Q 009993          317 GNTKSLARSHTGD-----FLFTGGEDGAIHMYEIINDCTEANVLLVATWIP-HTGPVNSLAFEF--PWLVSAAGDGKLSL  388 (520)
Q Consensus       317 ~~i~~l~~s~~~~-----~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~--~~l~s~s~dg~i~v  388 (520)
                      ...+.++|+|+++     ++++-+..+.|..||+..............+.+ +......++++.  +..++....+.|.+
T Consensus       172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~  251 (314)
T d1pjxa_         172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEE
Confidence            4457889998765     455556788999999875533222222222222 223456788854  66677777889999


Q ss_pred             EeCCcccccCCCCCCCceeeeeecCCCcccccC--cceeeEEEEecCC-EEEEecCCCeEEEEeCC
Q 009993          389 IDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG--FECNLLSVDIGAD-RIVCGGEEGIVRIWNFS  451 (520)
Q Consensus       389 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~  451 (520)
                      ||......                   ...+..  ......++.++++ +++|.+.+|.|...++.
T Consensus       252 ~dp~~g~~-------------------~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         252 FGPDGGQP-------------------KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             ECTTCBSC-------------------SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EeCCCCEE-------------------EEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            99875321                   111111  1222344444444 66777888988888775

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.34  E-value=0.00039  Score=62.59  Aligned_cols=226  Identities=8%  Similarity=-0.031  Sum_probs=125.3

Q ss_pred             cEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCC--ceEEEEecCCCEEEEEeCC----CcEEEEEcccCcce
Q 009993          144 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG--CTIRAVAADKKLLVAGGTD----GFIHCWRAVEVLPH  217 (520)
Q Consensus       144 ~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~l~sg~~d----g~i~vwd~~~~~~~  217 (520)
                      .+..++|.++|++.++-...+.|..|+.+++.....+....  ..-.++.++|+++++...+    +.+...+..+....
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~  120 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ  120 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee
Confidence            44688999999988887789999999988776555443332  2344556888877765432    22333333222110


Q ss_pred             eeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec------CCeEEEEECCCCcEEEEeeeccCEEEE--eeCCC
Q 009993          218 LFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW------DMTVRVWDRALLKCLKVLRHSDWVYGL--APHDT  287 (520)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~~~v~~~--~~~~~  287 (520)
                                 ....-..-......+++  +|+..++...      .+.+..++............-...+.+  +++++
T Consensus       121 -----------~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~  189 (319)
T d2dg1a1         121 -----------DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK  189 (319)
T ss_dssp             -----------EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSS
T ss_pred             -----------eeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccc
Confidence                       00000011234667777  5554444321      133555555443333333322333444  47888


Q ss_pred             EEEEEc--CCeEEEEECCCC-eeeEE----e--ecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeee
Q 009993          288 TVASTS--GSDVYIWDTNSG-CLLTV----V--NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA  358 (520)
Q Consensus       288 ~l~~~~--d~~i~iwd~~~~-~~~~~----~--~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~  358 (520)
                      .|+.+.  .+.|+.||+... .....    .  ........-.+++.++|++.++....+.|.+||. .+.....+..-.
T Consensus       190 ~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~  268 (319)
T d2dg1a1         190 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPG  268 (319)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTT
T ss_pred             eEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCC
Confidence            665554  789999997643 11111    1  0111223568999999998888889999999996 452211111111


Q ss_pred             eecCCcCCEEEEEecC--CEEEEEe
Q 009993          359 TWIPHTGPVNSLAFEF--PWLVSAA  381 (520)
Q Consensus       359 ~~~~h~~~v~~l~~~~--~~l~s~s  381 (520)
                      .-.++...+++++|.+  ..+++.+
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         269 RDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             GGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             cCCCcCceeeeEEEeCCCCEEEEEc
Confidence            1123445678999965  3444433

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.26  E-value=0.0015  Score=59.78  Aligned_cols=162  Identities=14%  Similarity=0.184  Sum_probs=89.5

Q ss_pred             EEEEe--eCCCEEEEEc--CCeEEEEECCCC-eee--EEee-cccccceEEEEecCCCCEEEEEe-CCCeEEEEEcccCc
Q 009993          279 VYGLA--PHDTTVASTS--GSDVYIWDTNSG-CLL--TVVN-GAHVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDC  349 (520)
Q Consensus       279 v~~~~--~~~~~l~~~~--d~~i~iwd~~~~-~~~--~~~~-~~~~~~i~~l~~s~~~~~l~tg~-~dg~i~iwd~~~~~  349 (520)
                      +.++.  |++++++++.  ...|.+|+.... ...  .... .........++|+|+++++++.. .+++|.+|++....
T Consensus       147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~  226 (365)
T d1jofa_         147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             ceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence            44444  8999888887  467888876543 221  1111 12356788999999999886655 57899999987653


Q ss_pred             cccceeeeeee--------------cCCcCCEEEEEecC--CEEEEEeC-C-----CcEEEEeCCcccccCCCCCCCcee
Q 009993          350 TEANVLLVATW--------------IPHTGPVNSLAFEF--PWLVSAAG-D-----GKLSLIDVRKLLRSGRPTSGKRVS  407 (520)
Q Consensus       350 ~~~~~~~~~~~--------------~~h~~~v~~l~~~~--~~l~s~s~-d-----g~i~vwd~~~~~~~~~~~~~~~~~  407 (520)
                      .... ......              ..+......+.++|  ++|+++.. +     +.|..|++......         .
T Consensus       227 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~---------~  296 (365)
T d1jofa_         227 HMPV-YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI---------E  296 (365)
T ss_dssp             CCEE-EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE---------E
T ss_pred             ceEE-EEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCce---------e
Confidence            2110 111111              01222355677765  67766642 2     23767776542110         0


Q ss_pred             eeeecCCCcccccCcceeeEEEEe-cCCEE-EEecCCCeEEEEeCCc
Q 009993          408 RVIEVEPPQRMLHGFECNLLSVDI-GADRI-VCGGEEGIVRIWNFSQ  452 (520)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l-~sg~~Dg~v~iwd~~~  452 (520)
                      ......  .....+....-+++++ ++++| ++...++.|.+|++..
T Consensus       297 ~~~~~~--~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         297 KQLFLS--PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             EEEEEE--ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             eEeEee--EEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence            000000  0001122223355665 56744 5556889999998864

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.10  E-value=0.00049  Score=59.17  Aligned_cols=187  Identities=17%  Similarity=0.226  Sum_probs=122.7

Q ss_pred             CCeEEEEECCCCcEEEEeeeccCEEEEe-eCCCEEEEEcCCeEEEEECCCC-eeeEEeeccc----ccceEEEEecCCCC
Q 009993          256 DMTVRVWDRALLKCLKVLRHSDWVYGLA-PHDTTVASTSGSDVYIWDTNSG-CLLTVVNGAH----VGNTKSLARSHTGD  329 (520)
Q Consensus       256 dg~v~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~d~~i~iwd~~~~-~~~~~~~~~~----~~~i~~l~~s~~~~  329 (520)
                      ..++.++|+++.+.++.+.....|.-.. .+.+.|+...+..|+-|+++.. .+.+.+.. |    ...|..-..+++.+
T Consensus        82 g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~taVYHW~~~g~s~P~k~fdR-~~~L~~~QIInY~~d~~~k  160 (327)
T d1utca2          82 GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDR-HSSLAGCQIINYRTDAKQK  160 (327)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEEECSSEEEEEESSSSCCCEEEEEC-CGGGTTCEEEEEEECTTSC
T ss_pred             CCeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEEEEcCCceEEEcccCCCCchhhhhh-cccccCceEEEEEECCCCC
Confidence            5689999999999999999888887777 7889999999999999999653 45555553 4    24677788889999


Q ss_pred             EEEEEe---C----CCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC-----CEEEEE---eCCCcEEEEeCCcc
Q 009993          330 FLFTGG---E----DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-----PWLVSA---AGDGKLSLIDVRKL  394 (520)
Q Consensus       330 ~l~tg~---~----dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~l~s~---s~dg~i~vwd~~~~  394 (520)
                      +++..+   .    .|.+.+|..+..       .-+.+.||.+.-..+..++     ..++-+   ...+.+.|-++...
T Consensus       161 W~~l~GI~~~~~~i~G~mQLYS~er~-------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~  233 (327)
T d1utca2         161 WLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP  233 (327)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEETTTT-------EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCC
T ss_pred             EEEEEeEecCCCceeEEEEEEEeccC-------cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCC
Confidence            877532   2    467889988776       4566788887777776643     123222   22368899998764


Q ss_pred             cccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC--EEEEecCCCeEEEEeCCchHhHH
Q 009993          395 LRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIE  457 (520)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~~~~~  457 (520)
                      ....... .+..   .++..+....   ..--.++..+.+  .+..-+.-|.|++||++++..+-
T Consensus       234 ~~g~~~f-~kk~---vdi~fppea~---~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~  291 (327)
T d1utca2         234 PTGNQPF-PKKA---VDVFFPPEAQ---NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY  291 (327)
T ss_dssp             CTTCCCC-CCEE---EECCCCTTCT---TCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             ccCCCCC-ccee---EEEECCcccc---CCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEE
Confidence            2211111 1111   1111111111   112233444444  77777788999999999987643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.95  E-value=0.0053  Score=54.13  Aligned_cols=180  Identities=10%  Similarity=-0.033  Sum_probs=107.7

Q ss_pred             EEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecCCeEEEEECCCCcEEEEee
Q 009993          196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR  274 (520)
Q Consensus       196 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  274 (520)
                      +.++--..+.|..||..++...               .......+.++++ ....++.++.+ -+..+|..+++......
T Consensus        32 l~wvDi~~~~I~r~d~~~g~~~---------------~~~~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~   95 (295)
T d2ghsa1          32 AWWFNILERELHELHLASGRKT---------------VHALPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAE   95 (295)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEE---------------EEECSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEEC
T ss_pred             EEEEECCCCEEEEEECCCCeEE---------------EEECCCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEee
Confidence            3334334566777776655321               1122345777887 44555556655 58899999887654433


Q ss_pred             --e---ccCEEEEe--eCCCEEEEEc-C----CeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEE-EEeCCCeEE
Q 009993          275 --H---SDWVYGLA--PHDTTVASTS-G----SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLF-TGGEDGAIH  341 (520)
Q Consensus       275 --~---~~~v~~~~--~~~~~l~~~~-d----~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~-tg~~dg~i~  341 (520)
                        .   ...++.+.  ++|++.++.. .    +.-.+|.+..++......  .....+.++|+++++.++ +-+..+.|.
T Consensus        96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~--~~~~~Ng~~~s~d~~~l~~~dt~~~~I~  173 (295)
T d2ghsa1          96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA--DISIPNSICFSPDGTTGYFVDTKVNRLM  173 (295)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE--EESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred             eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee--ccCCcceeeecCCCceEEEeecccceee
Confidence              1   12344444  7888777654 2    345666666666544443  344567899999998655 555678899


Q ss_pred             EEEcccCccc--cceeeeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCCc
Q 009993          342 MYEIINDCTE--ANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       342 iwd~~~~~~~--~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  393 (520)
                      .|++......  ..........+..+....++++.  ++.++.-..+.|..||...
T Consensus       174 ~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G  229 (295)
T d2ghsa1         174 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG  229 (295)
T ss_dssp             EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC
T ss_pred             EeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCC
Confidence            9987543211  11122233334455678888864  5556655678899999653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.94  E-value=0.0054  Score=54.06  Aligned_cols=209  Identities=13%  Similarity=0.014  Sum_probs=120.9

Q ss_pred             EEEEcc-CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCc
Q 009993          147 TVFVLA-SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE  225 (520)
Q Consensus       147 ~l~~~~-~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~  225 (520)
                      +..|++ ++.+..+--..+.|.-||..+++......+......++..++.++++ +.+ .+.++|..++....+..... 
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~-   98 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELES-   98 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSST-
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeec-
Confidence            345776 45555555567889999998886543223333344445577766654 555 48889988774322110000 


Q ss_pred             cccceEEeccCCCCeEEEEE--cCCEEEEEec----CCeEEEEECCCCcEEEEeeeccCEEEE--eeCCCEEEEE-c-CC
Q 009993          226 KQNTQFRLWEHEGPITSLAL--DLTRIYSGSW----DMTVRVWDRALLKCLKVLRHSDWVYGL--APHDTTVAST-S-GS  295 (520)
Q Consensus       226 ~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~----dg~v~iwd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~-~-d~  295 (520)
                              ......++++.+  +|+..++...    .+.-.+|.+..++.......-..-+.+  +++++.++.+ + .+
T Consensus        99 --------~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~  170 (295)
T d2ghsa1          99 --------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVN  170 (295)
T ss_dssp             --------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred             --------CCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccc
Confidence                    011224666777  4454444322    234456666666655544432233344  4677755544 4 68


Q ss_pred             eEEEEECCCC------ee-eEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEE
Q 009993          296 DVYIWDTNSG------CL-LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN  368 (520)
Q Consensus       296 ~i~iwd~~~~------~~-~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~  368 (520)
                      .|+.|++...      +. ......+..+....+++..+|++.++....+.|..||.. +      +.+..+.-....++
T Consensus       171 ~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G------~~~~~i~lP~~~~T  243 (295)
T d2ghsa1         171 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G------NHIARYEVPGKQTT  243 (295)
T ss_dssp             EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-C------CEEEEEECSCSBEE
T ss_pred             eeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-C------cEeeEecCCCCceE
Confidence            8999887431      11 111112334567889999999988888788999999964 4      34444444445689


Q ss_pred             EEEec
Q 009993          369 SLAFE  373 (520)
Q Consensus       369 ~l~~~  373 (520)
                      +++|-
T Consensus       244 ~~~FG  248 (295)
T d2ghsa1         244 CPAFI  248 (295)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99994

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.64  E-value=0.019  Score=51.10  Aligned_cols=189  Identities=10%  Similarity=0.078  Sum_probs=107.0

Q ss_pred             EEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec----CCeEEEE
Q 009993          189 AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW----DMTVRVW  262 (520)
Q Consensus       189 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~----dg~v~iw  262 (520)
                      ++.++|++.++-...+.|..|+..++.             ..............+++  +++.+++...    .+.+...
T Consensus        46 ~~D~~G~Ly~~D~~~g~I~ri~p~g~~-------------~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~  112 (319)
T d2dg1a1          46 NFDRQGQLFLLDVFEGNIFKINPETKE-------------IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAA  112 (319)
T ss_dssp             EECTTSCEEEEETTTCEEEEECTTTCC-------------EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEE
T ss_pred             EECCCCCEEEEECCCCEEEEEECCCCe-------------EEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEE
Confidence            345667666666667777777654431             12222234456778888  5666555432    2345555


Q ss_pred             ECCCCcEEEEeee---ccCEEEEe--eCCCEEEEEcC-------CeEEEEECCCCeeeEEeecccccceEEEEecCCCCE
Q 009993          263 DRALLKCLKVLRH---SDWVYGLA--PHDTTVASTSG-------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDF  330 (520)
Q Consensus       263 d~~~~~~~~~~~~---~~~v~~~~--~~~~~l~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~  330 (520)
                      +..+.........   ......+.  ++|++.++...       +.+..++...+.. ..+. ......+.++|+|+++.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~-~~~~-~~~~~pnGia~s~dg~~  190 (319)
T d2dg1a1         113 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPII-QNISVANGIALSTDEKV  190 (319)
T ss_dssp             CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE-EEEE-EEESSEEEEEECTTSSE
T ss_pred             cCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccccee-EEEe-eccceeeeeeeccccce
Confidence            6555554444432   22344443  78887776542       2366666554332 2222 13345678999999986


Q ss_pred             EE-EEeCCCeEEEEEcccCcccccee--eeeeecCCcCCEEEEEecC--CEEEEEeCCCcEEEEeCC
Q 009993          331 LF-TGGEDGAIHMYEIINDCTEANVL--LVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR  392 (520)
Q Consensus       331 l~-tg~~dg~i~iwd~~~~~~~~~~~--~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~  392 (520)
                      |+ +-+..+.|..|++..........  ..............++++.  ++.++....+.|.++|..
T Consensus       191 lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~  257 (319)
T d2dg1a1         191 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  257 (319)
T ss_dssp             EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             EEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC
Confidence            64 45667899999987542211110  1111112222356788864  677777888999999964

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.63  E-value=0.011  Score=51.01  Aligned_cols=220  Identities=10%  Similarity=0.028  Sum_probs=114.0

Q ss_pred             EEecC--CCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEec-CC-----e
Q 009993          189 AVAAD--KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DM-----T  258 (520)
Q Consensus       189 ~~~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg-----~  258 (520)
                      .++|+  |+.++..+ +|.|.+.|+.++.              ...+..+.+.+....|  ||+.|+.... ++     .
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~--------------~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~   69 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGS--------------TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTAD   69 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCC--------------EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCC--------------EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceE
Confidence            35677  88887665 4568777887663              3345556677888888  7888775432 22     4


Q ss_pred             EEEEECCCCcEEEEeee---------ccCEEEEeeCCCEEEEEc-C------CeEEEEECCCCeeeEEeecccccceEEE
Q 009993          259 VRVWDRALLKCLKVLRH---------SDWVYGLAPHDTTVASTS-G------SDVYIWDTNSGCLLTVVNGAHVGNTKSL  322 (520)
Q Consensus       259 v~iwd~~~~~~~~~~~~---------~~~v~~~~~~~~~l~~~~-d------~~i~iwd~~~~~~~~~~~~~~~~~i~~l  322 (520)
                      |.+++..+++.......         ......++++++.++... .      ..+...+...+.....    +.......
T Consensus        70 i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  145 (281)
T d1k32a2          70 LYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL----NLGPATHI  145 (281)
T ss_dssp             EEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC----CSCSCSEE
T ss_pred             EEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe----cCCcccee
Confidence            77788877776554321         122334558888887754 1      2255555555443222    12222223


Q ss_pred             EecCCCCEEEEEeCCC-----------eEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEe-CC--CcEEE
Q 009993          323 ARSHTGDFLFTGGEDG-----------AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAA-GD--GKLSL  388 (520)
Q Consensus       323 ~~s~~~~~l~tg~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s-~d--g~i~v  388 (520)
                      .+.+.+..++....+.           ..........      . ......+........+.+..++... .+  ..|.+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  218 (281)
T d1k32a2         146 LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSG------A-FKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYS  218 (281)
T ss_dssp             EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETT------E-EEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEE
T ss_pred             eecCCCeEEEeeccccceeeeeccCCcceeeeecccc------c-eeeccCCccccceeeeeccccceecccccccceEE
Confidence            3333333333222111           1111111111      1 1112223334445555565554444 33  34666


Q ss_pred             EeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEecCCCeEEEEeCCchH
Q 009993          389 IDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAF  454 (520)
Q Consensus       389 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~v~iwd~~~~~  454 (520)
                      +|+.+..                   ...........+..++++++.|+.. .+|.|+++|+.+++
T Consensus       219 ~d~~g~~-------------------~~~lt~~~~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~  264 (281)
T d1k32a2         219 TDLDGKD-------------------LRKHTSFTDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK  264 (281)
T ss_dssp             EETTSCS-------------------CEECCCCCSSCEEEEEESSSCEEEE-ETTEEEEECTTTCC
T ss_pred             EeCCCCc-------------------eEEeecCCCcccccCcCCCCEEEEE-eCCEEEEEECCCCC
Confidence            7776531                   1111112233456788999866653 35789999988764

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=0.02  Score=49.06  Aligned_cols=195  Identities=12%  Similarity=0.063  Sum_probs=106.3

Q ss_pred             eccCCCCeEEEEE--cCCEEEEEecCC---eEEEEECCCCcEEEEeeeccCEEEE--eeCCCEEEEEc--CCe--EEEEE
Q 009993          233 LWEHEGPITSLAL--DLTRIYSGSWDM---TVRVWDRALLKCLKVLRHSDWVYGL--APHDTTVASTS--GSD--VYIWD  301 (520)
Q Consensus       233 ~~~h~~~v~~l~~--~~~~l~s~s~dg---~v~iwd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~--d~~--i~iwd  301 (520)
                      +..+...+.+-+|  ||+.|+......   .+.+.+..++.......+.......  ++++..++...  ++.  +..+.
T Consensus        34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~  113 (269)
T d2hqsa1          34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD  113 (269)
T ss_dssp             EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeecc
Confidence            3345677888889  888888665433   4777787777765555555555544  48898888766  333  33333


Q ss_pred             CCCCeeeEEeecccccceEEEEecCCCCEEE-EEeCCCeE--EEEEcccCccccceeeeeeecCCcCCEEEEEecC--CE
Q 009993          302 TNSGCLLTVVNGAHVGNTKSLARSHTGDFLF-TGGEDGAI--HMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PW  376 (520)
Q Consensus       302 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~-tg~~dg~i--~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~  376 (520)
                      ..........  ..........+++++..++ +...+|..  .+.++...       ....+..+........|+|  ..
T Consensus       114 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~spdg~~  184 (269)
T d2hqsa1         114 LASGQIRQVT--DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG-------APQRITWEGSQNQDADVSSDGKF  184 (269)
T ss_dssp             TTTCCEEECC--CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS-------CCEECCCSSSEEEEEEECTTSSE
T ss_pred             cccccceeee--eccccccccccccccccceecccccCCceEeeeecccc-------cceeeecccccccccccccccce
Confidence            3333333222  2344445556777776544 44455654  44454444       2223334455566677765  45


Q ss_pred             EEEE-eCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEEEEec---CCCeEEEEeCCc
Q 009993          377 LVSA-AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGG---EEGIVRIWNFSQ  452 (520)
Q Consensus       377 l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~---~Dg~v~iwd~~~  452 (520)
                      ++.. ...+...+|.......                 ...............++++|+.|+-.+   ....|+++++..
T Consensus       185 ~~~~~~~~~~~~i~~~~~~~~-----------------~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg  247 (269)
T d2hqsa1         185 MVMVSSNGGQQHIAKQDLATG-----------------GVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG  247 (269)
T ss_dssp             EEEEEECSSCEEEEEEETTTC-----------------CEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred             eEEEeecCCceeeeEeecccc-----------------cceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            5444 4455555555443210                 001111122233446888888665433   345688888875


Q ss_pred             h
Q 009993          453 A  453 (520)
Q Consensus       453 ~  453 (520)
                      +
T Consensus       248 ~  248 (269)
T d2hqsa1         248 R  248 (269)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.035  Score=52.17  Aligned_cols=71  Identities=10%  Similarity=0.000  Sum_probs=48.4

Q ss_pred             cEEEEEEccCCCEEEEEe---------CCCeEEEEECCCCcEEEEeCC--CCce--EEEEecCCCEEEEEeCCCcEEEEE
Q 009993          144 AVLTVFVLASAKLLFTSG---------YDSIVRMWHLEDGFSIASSKP--LGCT--IRAVAADKKLLVAGGTDGFIHCWR  210 (520)
Q Consensus       144 ~V~~l~~~~~~~~l~sgs---------~dg~v~vwd~~~~~~~~~~~~--~~~~--v~~~~~~~~~l~sg~~dg~i~vwd  210 (520)
                      .+....|+||+++++.+.         ..+.+.++|+.++........  ....  ...++|+|+.+|-.. ++.|.+.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~  140 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA  140 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEe
Confidence            556778999999887763         357889999998865433221  1222  245789999988765 56777777


Q ss_pred             cccCc
Q 009993          211 AVEVL  215 (520)
Q Consensus       211 ~~~~~  215 (520)
                      ..++.
T Consensus       141 ~~~~~  145 (465)
T d1xfda1         141 HVGKQ  145 (465)
T ss_dssp             SSSSC
T ss_pred             cCCCc
Confidence            66553

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.46  E-value=0.013  Score=56.73  Aligned_cols=189  Identities=13%  Similarity=0.048  Sum_probs=108.3

Q ss_pred             CCCEEEEEeCCCeEEEEEC-CCCcEEEEeCCCCc----eE-------EEEecCCCEEEEEeCCCcEEEEEcccCcceeee
Q 009993          153 SAKLLFTSGYDSIVRMWHL-EDGFSIASSKPLGC----TI-------RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD  220 (520)
Q Consensus       153 ~~~~l~sgs~dg~v~vwd~-~~~~~~~~~~~~~~----~v-------~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  220 (520)
                      +|.++++.+.++.|...|. ++|+.+.++.....    ..       ..+...+..++.++.||.+...|.++++..-..
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~~g~l~alda~tG~~~w~~  141 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEV  141 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEeCCCcEEeeehhhhhhhccc
Confidence            4444444444788988897 47999887642110    00       112223567888999999999999988532110


Q ss_pred             ccCCccccceEEeccCCCCeEE-EEEcCCEEEEEe------cCCeEEEEECCCCcEEEEeeec-----------------
Q 009993          221 ISGSEKQNTQFRLWEHEGPITS-LALDLTRIYSGS------WDMTVRVWDRALLKCLKVLRHS-----------------  276 (520)
Q Consensus       221 ~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~~-----------------  276 (520)
                      -....         .....++. -.+.++.++.+.      .+|.|+-+|+.+|+.+..+...                 
T Consensus       142 ~~~~~---------~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~  212 (571)
T d2ad6a1         142 EVCDP---------KVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANP  212 (571)
T ss_dssp             ECCCG---------GGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred             ccccc---------ccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCccccccccccccccc
Confidence            00000         00011110 112334455554      3688999999999998876411                 


Q ss_pred             ---------------------cCE---EEEeeCCCEEEEEcC-----------------CeEEEEECCCCeeeEEeeccc
Q 009993          277 ---------------------DWV---YGLAPHDTTVASTSG-----------------SDVYIWDTNSGCLLTVVNGAH  315 (520)
Q Consensus       277 ---------------------~~v---~~~~~~~~~l~~~~d-----------------~~i~iwd~~~~~~~~~~~~~~  315 (520)
                                           ..+   .++.+...+++.+.+                 ..+.-.|.++|+.+..+...|
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~  292 (571)
T d2ad6a1         213 HYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTP  292 (571)
T ss_dssp             GGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred             ccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccC
Confidence                                 011   244455555554431                 347888999999888776322


Q ss_pred             c--------cceEEEEecCCCC---EEEEEeCCCeEEEEEcccCcc
Q 009993          316 V--------GNTKSLARSHTGD---FLFTGGEDGAIHMYEIINDCT  350 (520)
Q Consensus       316 ~--------~~i~~l~~s~~~~---~l~tg~~dg~i~iwd~~~~~~  350 (520)
                      .        ..........+++   .++.++.+|.++++|..+++.
T Consensus       293 ~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~  338 (571)
T d2ad6a1         293 HDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL  338 (571)
T ss_dssp             TCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             ccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcE
Confidence            1        1112222222443   467788999999999888753

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.46  E-value=0.038  Score=50.27  Aligned_cols=150  Identities=12%  Similarity=0.140  Sum_probs=85.8

Q ss_pred             EEEEccCCCEEEEEeCCC-----------eEEEEECCCCcEEE--Ee-CC--CCceEEEEecCCCEEEEEeCC-CcEEEE
Q 009993          147 TVFVLASAKLLFTSGYDS-----------IVRMWHLEDGFSIA--SS-KP--LGCTIRAVAADKKLLVAGGTD-GFIHCW  209 (520)
Q Consensus       147 ~l~~~~~~~~l~sgs~dg-----------~v~vwd~~~~~~~~--~~-~~--~~~~v~~~~~~~~~l~sg~~d-g~i~vw  209 (520)
                      ......+|++++.|+.+.           .+.+||..++.-..  .. .+  +-+.-..+.+++.+++.|+.+ ..+.+|
T Consensus        24 ~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~y  103 (387)
T d1k3ia3          24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLY  103 (387)
T ss_dssp             EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEE
T ss_pred             EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEe
Confidence            334456888888888531           37799998875321  11 12  222334566899999988766 579999


Q ss_pred             EcccCcceeeeccCCccccceEEeccCCCCeEEEEE-cCCEEEEEecC------CeEEEEECCCCcEEEEee--e-----
Q 009993          210 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWD------MTVRVWDRALLKCLKVLR--H-----  275 (520)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~--~-----  275 (520)
                      |..+..-..           ...+......-..... |+..++.|+.+      ..+.+||..+.+-...-.  .     
T Consensus       104 d~~~~~w~~-----------~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~  172 (387)
T d1k3ia3         104 DSSSDSWIP-----------GPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLT  172 (387)
T ss_dssp             EGGGTEEEE-----------CCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCC
T ss_pred             cCccCcccc-----------cccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCccccccc
Confidence            987753211           1111111222233333 78888887753      368999988765332211  0     


Q ss_pred             ---------ccCEEEEe-eCCCEEEEEc-CCeEEEEECCCCee
Q 009993          276 ---------SDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCL  307 (520)
Q Consensus       276 ---------~~~v~~~~-~~~~~l~~~~-d~~i~iwd~~~~~~  307 (520)
                               ......+. ++++.++.+. .+.+.++|..+...
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         173 ADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             CCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             ccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence                     01111222 5666666665 66777788777654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.36  E-value=0.033  Score=53.89  Aligned_cols=186  Identities=13%  Similarity=0.043  Sum_probs=107.5

Q ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCc----------e-EEEEecCCCEEEEEeCCCcEEEEEcccCcceeeecc
Q 009993          154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC----------T-IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS  222 (520)
Q Consensus       154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~----------~-v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  222 (520)
                      +..|+.++.++.|.-+|..+|+.+.++.....          . -......+..++.++.|+.+...|..+++..- .. 
T Consensus        77 ~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~~g~l~alda~tG~~~W-~~-  154 (573)
T d1kb0a2          77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVW-HQ-  154 (573)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEE-EE-
T ss_pred             CCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEecccceeeecccccccee-cc-
Confidence            34677778889999999999999987643210          0 01112234567788888988888888875321 10 


Q ss_pred             CCccccceEEeccC-CCCe--E-EEEEcCCEEEEEec------CCeEEEEECCCCcEEEEeeec----------------
Q 009993          223 GSEKQNTQFRLWEH-EGPI--T-SLALDLTRIYSGSW------DMTVRVWDRALLKCLKVLRHS----------------  276 (520)
Q Consensus       223 ~~~~~~~~~~~~~h-~~~v--~-~l~~~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~----------------  276 (520)
                               ....+ ...+  + .-.+..+.+++++.      .|.|+.+|.++|+.+..+...                
T Consensus       155 ---------~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~  225 (573)
T d1kb0a2         155 ---------NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRA  225 (573)
T ss_dssp             ---------ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHH
T ss_pred             ---------cCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCccccccc
Confidence                     00001 0111  0 01113445555543      468999999999998876410                


Q ss_pred             ----------------cC---EEEEeeCCCEEEEEc--------------------CCeEEEEECCCCeeeEEeecccc-
Q 009993          277 ----------------DW---VYGLAPHDTTVASTS--------------------GSDVYIWDTNSGCLLTVVNGAHV-  316 (520)
Q Consensus       277 ----------------~~---v~~~~~~~~~l~~~~--------------------d~~i~iwd~~~~~~~~~~~~~~~-  316 (520)
                                      ..   ..++.+....++...                    ...|.-.|+++++....+...+. 
T Consensus       226 ~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d  305 (573)
T d1kb0a2         226 ARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGD  305 (573)
T ss_dssp             HTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTC
T ss_pred             ccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcc
Confidence                            11   133444444444322                    12477788888887766553221 


Q ss_pred             -------cceEEEEecCCC---CEEEEEeCCCeEEEEEcccCcc
Q 009993          317 -------GNTKSLARSHTG---DFLFTGGEDGAIHMYEIINDCT  350 (520)
Q Consensus       317 -------~~i~~l~~s~~~---~~l~tg~~dg~i~iwd~~~~~~  350 (520)
                             .+........++   ..++.++.+|.++++|..+++.
T Consensus       306 ~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~  349 (573)
T d1kb0a2         306 NWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF  349 (573)
T ss_dssp             CSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             cccccccceeeecceecCCCceeeeeeccccceeEEeccccccc
Confidence                   112222222233   3577788999999999988853

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.003  Score=59.83  Aligned_cols=135  Identities=10%  Similarity=0.054  Sum_probs=83.2

Q ss_pred             eCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEe---------cCCeEEEEECCCCcE
Q 009993          201 GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS---------WDMTVRVWDRALLKC  269 (520)
Q Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s---------~dg~v~iwd~~~~~~  269 (520)
                      ..+|.|.+||+.++....+-...        .+  ..-.+....+  |+++++...         ..+.+.++|+.++..
T Consensus        34 ~~~g~i~~~~~~~~~~~~l~~~~--------~~--~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~  103 (465)
T d1xfda1          34 EQKGTVRLWNVETNTSTVLIEGK--------KI--ESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP  103 (465)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTT--------TT--TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC
T ss_pred             eCCCcEEEEECCCCCEEEEEcCc--------cc--cccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCce
Confidence            44567888888776532211000        00  1123334444  777776653         357889999998875


Q ss_pred             EEEee---eccCE--EEEeeCCCEEEEEcCCeEEEEECCCCeeeEEeecccccce-----------------EEEEecCC
Q 009993          270 LKVLR---HSDWV--YGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNT-----------------KSLARSHT  327 (520)
Q Consensus       270 ~~~~~---~~~~v--~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i-----------------~~l~~s~~  327 (520)
                      .....   ....+  ..++|+|+.++-..++.|.+.+..++..++....+..+.+                 .++-||||
T Consensus       104 ~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPD  183 (465)
T d1xfda1         104 QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPD  183 (465)
T ss_dssp             EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTT
T ss_pred             eeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCC
Confidence            44332   12222  3456999999999999999999988776655543322222                 46789999


Q ss_pred             CCEEEEEeC-CCeEEEEEc
Q 009993          328 GDFLFTGGE-DGAIHMYEI  345 (520)
Q Consensus       328 ~~~l~tg~~-dg~i~iwd~  345 (520)
                      |++||.... +..+..+.+
T Consensus       184 gk~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         184 GTRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             SSEEEEEEEECTTSCEEEE
T ss_pred             CCeEEEEEecccccceeec
Confidence            999987653 344555554

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.25  E-value=0.046  Score=52.67  Aligned_cols=186  Identities=15%  Similarity=0.026  Sum_probs=108.9

Q ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCc-----------eEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeecc
Q 009993          154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC-----------TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS  222 (520)
Q Consensus       154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~-----------~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  222 (520)
                      +..|+.++.++.|.-.|..+|+.+.++.....           ........+..++.+..|+.|.-.|..+++..-. . 
T Consensus        66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~l~Alda~tG~~~w~-~-  143 (560)
T d1kv9a2          66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWS-Q-  143 (560)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEE-E-
T ss_pred             CCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCCCEEEEEECCCCcEEec-c-
Confidence            34677777889999999999999987642210           0011123356788889999999999888753211 1 


Q ss_pred             CCccccceEEeccCCC--CeE-EEEEcCCEEEEEec------CCeEEEEECCCCcEEEEeee------------------
Q 009993          223 GSEKQNTQFRLWEHEG--PIT-SLALDLTRIYSGSW------DMTVRVWDRALLKCLKVLRH------------------  275 (520)
Q Consensus       223 ~~~~~~~~~~~~~h~~--~v~-~l~~~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~------------------  275 (520)
                               ....+..  .++ .-.+..+.++.+..      .|.|.-+|.++++.+..+..                  
T Consensus       144 ---------~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~  214 (560)
T d1kv9a2         144 ---------QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAA  214 (560)
T ss_dssp             ---------ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHH
T ss_pred             ---------CccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccc
Confidence                     0001000  000 01113344444432      36799999999999887751                  


Q ss_pred             -------------ccCE---EEEeeCCCEEEEEc--------------------CCeEEEEECCCCeeeEEeeccccc--
Q 009993          276 -------------SDWV---YGLAPHDTTVASTS--------------------GSDVYIWDTNSGCLLTVVNGAHVG--  317 (520)
Q Consensus       276 -------------~~~v---~~~~~~~~~l~~~~--------------------d~~i~iwd~~~~~~~~~~~~~~~~--  317 (520)
                                   ...+   .++.+...+++.+.                    ...|.-.|+++++....+...|..  
T Consensus       215 ~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~w  294 (560)
T d1kv9a2         215 KTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSW  294 (560)
T ss_dssp             TTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS
T ss_pred             ccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccc
Confidence                         0111   23445555555432                    124777899999887766532211  


Q ss_pred             ------ceEEEEecCCC---CEEEEEeCCCeEEEEEcccCcc
Q 009993          318 ------NTKSLARSHTG---DFLFTGGEDGAIHMYEIINDCT  350 (520)
Q Consensus       318 ------~i~~l~~s~~~---~~l~tg~~dg~i~iwd~~~~~~  350 (520)
                            ...-+....++   ..++.+..+|.++++|..+++.
T Consensus       295 d~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~  336 (560)
T d1kv9a2         295 DFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (560)
T ss_dssp             CCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             cccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcc
Confidence                  11112222234   3577788999999999988853

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.14  E-value=0.12  Score=49.61  Aligned_cols=156  Identities=12%  Similarity=0.063  Sum_probs=84.0

Q ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeCCCC----ceEEE--EecCCCEEEEEe------CCCcEEEEEcccCcceeeec
Q 009993          154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLG----CTIRA--VAADKKLLVAGG------TDGFIHCWRAVEVLPHLFDI  221 (520)
Q Consensus       154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~----~~v~~--~~~~~~~l~sg~------~dg~i~vwd~~~~~~~~~~~  221 (520)
                      +..++.++.|+.+.--|.++|+.+.......    ..+..  +-.+ ..++.+.      .+|.|.-+|+.+|+..-...
T Consensus       115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  193 (571)
T d2ad6a1         115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeC-CeEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence            4467788899999999999998876653211    01100  1123 3444544      36789999999986432110


Q ss_pred             cCCcccc-----------c-------------eEEeccCCCCe---EEEEEcCCEEEEEec----------------CCe
Q 009993          222 SGSEKQN-----------T-------------QFRLWEHEGPI---TSLALDLTRIYSGSW----------------DMT  258 (520)
Q Consensus       222 ~~~~~~~-----------~-------------~~~~~~h~~~v---~~l~~~~~~l~s~s~----------------dg~  258 (520)
                      .......           .             ........+.+   .++....+.++.+..                ...
T Consensus       194 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~s  273 (571)
T d2ad6a1         194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT  273 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred             ccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccc
Confidence            0000000           0             00000001112   122223344444333                346


Q ss_pred             EEEEECCCCcEEEEee---ecc--------CE-EEEeeCCC---EEEEEc-CCeEEEEECCCCeeeEE
Q 009993          259 VRVWDRALLKCLKVLR---HSD--------WV-YGLAPHDT---TVASTS-GSDVYIWDTNSGCLLTV  310 (520)
Q Consensus       259 v~iwd~~~~~~~~~~~---~~~--------~v-~~~~~~~~---~l~~~~-d~~i~iwd~~~~~~~~~  310 (520)
                      +...|.++++.+..++   |..        .+ ..+..+++   .++... +|.++++|..+|+.+..
T Consensus       274 vvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~  341 (571)
T d2ad6a1         274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA  341 (571)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             eeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeee
Confidence            7888999999888776   111        11 22334444   344555 89999999999988754

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.84  E-value=0.16  Score=45.84  Aligned_cols=223  Identities=12%  Similarity=0.020  Sum_probs=130.2

Q ss_pred             EEEEeCCCeEEEEECCCCcEEEEeCCC----------C---------------------------------ceEEEEe--
Q 009993          157 LFTSGYDSIVRMWHLEDGFSIASSKPL----------G---------------------------------CTIRAVA--  191 (520)
Q Consensus       157 l~sgs~dg~v~vwd~~~~~~~~~~~~~----------~---------------------------------~~v~~~~--  191 (520)
                      +.||+..|.|+|+-+.+++.++.+...          +                                 .+-.++.  
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            568889999999999888776654110          0                                 0112222  


Q ss_pred             -cCCCEEEEEe-CCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE----cCCEEEEEecC---------
Q 009993          192 -ADKKLLVAGG-TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWD---------  256 (520)
Q Consensus       192 -~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~d---------  256 (520)
                       +||+++++.. .++.|.+.|+.+.+..           .+..+ .....+..+..    +-.|++.++.+         
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~-----------kIi~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~  163 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCD-----------AILEI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT  163 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEE-----------EEEEC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeee-----------EEEec-CCCCCCceeecccCCCeEEEEccCccccccCCCCc
Confidence             5788877766 5788999998765321           11122 22334444444    33566665553         


Q ss_pred             ---------CeEEEEECCCCcEEEEeeeccC--EEEEeeCCCEEEEEc-CC-----------------------------
Q 009993          257 ---------MTVRVWDRALLKCLKVLRHSDW--VYGLAPHDTTVASTS-GS-----------------------------  295 (520)
Q Consensus       257 ---------g~v~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~l~~~~-d~-----------------------------  295 (520)
                               +.+.++|..+.+....+.-...  -..+.++|+++++.+ +.                             
T Consensus       164 ~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av  243 (459)
T d1fwxa2         164 NMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI  243 (459)
T ss_dssp             STTCGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred             cccchhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhh
Confidence                     2367789999888877764333  345558899888876 31                             


Q ss_pred             ---------eEEEEECCCC---eeeEEeecccccceEEEEecCCCCEEEEEe-CCCeEEEEEcccCcccc------ceee
Q 009993          296 ---------DVYIWDTNSG---CLLTVVNGAHVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDCTEA------NVLL  356 (520)
Q Consensus       296 ---------~i~iwd~~~~---~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~-~dg~i~iwd~~~~~~~~------~~~~  356 (520)
                               .+.+.|.+..   ..+..+.  -......+.++|||+++++++ .+.++.|+|++.-....      .-..
T Consensus       244 ~~Gk~~eingV~VVD~~~~~~~~v~~yIP--VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~  321 (459)
T d1fwxa2         244 AAGDYQELNGVKVVDGRKEASSLFTRYIP--IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV  321 (459)
T ss_dssp             HHTCSEEETTEEEEECSGG--CSSEEEEE--EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGE
T ss_pred             hcCCcEEeCCceeecccccCCcceeEEEe--cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccE
Confidence                     1233343321   1111221  223355789999999987655 58999999997432110      0011


Q ss_pred             eeeecCCcCCEEEEEecCC--EEEEEeCCCcEEEEeCCcc
Q 009993          357 VATWIPHTGPVNSLAFEFP--WLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       357 ~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~~  394 (520)
                      +... ...-....-+|+++  -..|---|..|.-|++...
T Consensus       322 ~~e~-elglgPLht~fd~~g~aytslfids~v~kw~~~~~  360 (459)
T d1fwxa2         322 VAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA  360 (459)
T ss_dssp             EECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred             Eeec-ccCcCccccccCCCceEEEEeeccceEEEEecchh
Confidence            1111 12223456678763  3444557999999999754

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.79  E-value=0.13  Score=43.94  Aligned_cols=226  Identities=9%  Similarity=-0.073  Sum_probs=106.2

Q ss_pred             EEccC--CCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceE--EEEecCCCEEEEEeC-CC-----cEEEEEcccCccee
Q 009993          149 FVLAS--AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTI--RAVAADKKLLVAGGT-DG-----FIHCWRAVEVLPHL  218 (520)
Q Consensus       149 ~~~~~--~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sg~~-dg-----~i~vwd~~~~~~~~  218 (520)
                      ..+||  |+.++-.+ ++.|.+.|+.+++... +..+....  -.++|||+.|+.... ++     .|.+++..++....
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~-Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRK-IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEE-EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEE-EecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            35788  99888665 4678888999887654 33333333  467899998886542 22     36666665553211


Q ss_pred             eeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecC------CeEEEEECCCCcEEEEeeeccCEEEEeeCCCEEE
Q 009993          219 FDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD------MTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVA  290 (520)
Q Consensus       219 ~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~  290 (520)
                      ....       ...............|  +++.++.....      ..+...+...+........ .......+++..++
T Consensus        83 lt~~-------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  154 (281)
T d1k32a2          83 ITYF-------SGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLG-PATHILFADGRRVI  154 (281)
T ss_dssp             CCCC-------CEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSC-SCSEEEEETTEEEE
T ss_pred             eeec-------CCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCC-ccceeeecCCCeEE
Confidence            1000       0011112223345556  66666654321      2344455544433222111 11122223333333


Q ss_pred             EEc--CC-----------eEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCC--CeEEEEEcccCcccccee
Q 009993          291 STS--GS-----------DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED--GAIHMYEIINDCTEANVL  355 (520)
Q Consensus       291 ~~~--d~-----------~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d--g~i~iwd~~~~~~~~~~~  355 (520)
                      ...  ..           .................  .........++++. .+.....+  ..|.++|+.+...     
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~-----  226 (281)
T d1k32a2         155 GRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVD--MSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDL-----  226 (281)
T ss_dssp             EESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEEC--CSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSC-----
T ss_pred             EeeccccceeeeeccCCcceeeeeccccceeeccC--Cccccceeeeeccc-cceecccccccceEEEeCCCCce-----
Confidence            222  10           11122222222222221  22333444454442 23333333  3477778776621     


Q ss_pred             eeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCcc
Q 009993          356 LVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKL  394 (520)
Q Consensus       356 ~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~  394 (520)
                       ..........+...+.+++.|+. ..++.|+++|+.++
T Consensus       227 -~~lt~~~~~~~~~~SpDG~~I~f-~~~~~l~~~d~~~g  263 (281)
T d1k32a2         227 -RKHTSFTDYYPRHLNTDGRRILF-SKGGSIYIFNPDTE  263 (281)
T ss_dssp             -EECCCCCSSCEEEEEESSSCEEE-EETTEEEEECTTTC
T ss_pred             -EEeecCCCcccccCcCCCCEEEE-EeCCEEEEEECCCC
Confidence             11112223345555556666655 34678999999875

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.77  E-value=0.27  Score=47.44  Aligned_cols=189  Identities=11%  Similarity=0.055  Sum_probs=110.6

Q ss_pred             CCCEEEEEeCCCeEEEEEC-CCCcEEEEeCCCCc--------------eEEEEe---cCCCEEEEEeCCCcEEEEEcccC
Q 009993          153 SAKLLFTSGYDSIVRMWHL-EDGFSIASSKPLGC--------------TIRAVA---ADKKLLVAGGTDGFIHCWRAVEV  214 (520)
Q Consensus       153 ~~~~l~sgs~dg~v~vwd~-~~~~~~~~~~~~~~--------------~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~  214 (520)
                      +|.++++++.++.|...|. .+|+.+.++.....              .+.-+.   ..+.+++.++.|+.|.-.|.+++
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG  141 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence            4554455566677888886 58998887642110              111111   23457889999999999999988


Q ss_pred             cceeeeccCCccccceEEeccCCCCeE-EEEEcCCEEEEEec------CCeEEEEECCCCcEEEEeeec-----------
Q 009993          215 LPHLFDISGSEKQNTQFRLWEHEGPIT-SLALDLTRIYSGSW------DMTVRVWDRALLKCLKVLRHS-----------  276 (520)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~-----------  276 (520)
                      +..-.......         .....++ .-.+.++.++.+..      .|.|+-+|.++|+.+..+...           
T Consensus       142 ~~~w~~~~~d~---------~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~  212 (596)
T d1w6sa_         142 ETVWKVENSDI---------KVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASD  212 (596)
T ss_dssp             CEEEEEECCCG---------GGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTT
T ss_pred             ceecccccccc---------ccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccc
Confidence            64221100000         0000111 11224556666653      489999999999998876411           


Q ss_pred             ---------------------------c---CEEEEeeCCCEEEEEc-C----------------CeEEEEECCCCeeeE
Q 009993          277 ---------------------------D---WVYGLAPHDTTVASTS-G----------------SDVYIWDTNSGCLLT  309 (520)
Q Consensus       277 ---------------------------~---~v~~~~~~~~~l~~~~-d----------------~~i~iwd~~~~~~~~  309 (520)
                                                 .   ...++.+...+++.+. +                ..|.-.|+++|+.+.
T Consensus       213 ~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W  292 (596)
T d1w6sa_         213 FNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKF  292 (596)
T ss_dssp             TTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEE
T ss_pred             cccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccc
Confidence                                       0   0123445555555543 2                237788999999888


Q ss_pred             Eeecccc--------cceEEEE-ecCCC---CEEEEEeCCCeEEEEEcccCcc
Q 009993          310 VVNGAHV--------GNTKSLA-RSHTG---DFLFTGGEDGAIHMYEIINDCT  350 (520)
Q Consensus       310 ~~~~~~~--------~~i~~l~-~s~~~---~~l~tg~~dg~i~iwd~~~~~~  350 (520)
                      .+...|.        ....-+. ...+|   +.++.+..+|.+.++|..+++.
T Consensus       293 ~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~  345 (596)
T d1w6sa_         293 GYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL  345 (596)
T ss_dssp             EEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             cccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCce
Confidence            7763222        1122222 12344   3677888999999999988853

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.74  E-value=0.19  Score=45.33  Aligned_cols=149  Identities=9%  Similarity=0.064  Sum_probs=81.2

Q ss_pred             EecCCCEEEEEeCCC-----------cEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEE--cCCEEEEEecC
Q 009993          190 VAADKKLLVAGGTDG-----------FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD  256 (520)
Q Consensus       190 ~~~~~~~l~sg~~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d  256 (520)
                      +..+++.++.|+.+.           .+.+||..++.-.          ........|.......++  ++..++.|+.+
T Consensus        27 ~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~----------~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~   96 (387)
T d1k3ia3          27 EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS----------DRTVTVTKHDMFCPGISMDGNGQIVVTGGND   96 (387)
T ss_dssp             ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBC----------CCEEEECSCCCSSCEEEECTTSCEEEECSSS
T ss_pred             EeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEe----------ecCCCCCCcccceeEEEEecCCcEEEeecCC
Confidence            346777777777431           2668988776421          011111122222223333  77888888655


Q ss_pred             -CeEEEEECCCCcEEEEee--e--ccCEEEEeeCCCEEEEEc-C------CeEEEEECCCCeeeEEee--cc------cc
Q 009993          257 -MTVRVWDRALLKCLKVLR--H--SDWVYGLAPHDTTVASTS-G------SDVYIWDTNSGCLLTVVN--GA------HV  316 (520)
Q Consensus       257 -g~v~iwd~~~~~~~~~~~--~--~~~v~~~~~~~~~l~~~~-d------~~i~iwd~~~~~~~~~~~--~~------~~  316 (520)
                       ..+.+||..+..-...-.  .  ...-.++..++++++.++ +      ..+.+||+.+.+-...-.  ..      +.
T Consensus        97 ~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~  176 (387)
T d1k3ia3          97 AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ  176 (387)
T ss_dssp             TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT
T ss_pred             CcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCccccccccccc
Confidence             589999998765543222  1  112223337888888876 2      358999998875322110  00      00


Q ss_pred             -----cceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993          317 -----GNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  348 (520)
Q Consensus       317 -----~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~  348 (520)
                           ..-..+...++|+.++.+..++.+.+++..+.
T Consensus       177 ~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~  213 (387)
T d1k3ia3         177 GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG  213 (387)
T ss_dssp             GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred             ceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccC
Confidence                 00111223346777777777777777776655

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=0.21  Score=44.81  Aligned_cols=147  Identities=10%  Similarity=0.006  Sum_probs=89.3

Q ss_pred             CCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEE
Q 009993          183 LGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVW  262 (520)
Q Consensus       183 ~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iw  262 (520)
                      ......+++....++++|+.++ +.|-.+..-..................    -..|..++|+++.++... ++.+..+
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~----ip~v~~vafs~d~l~v~~-~~~l~~~  110 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE----IPDVIFVCFHGDQVLVST-RNALYSL  110 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE----CTTEEEEEEETTEEEEEE-SSEEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC----CCCeEEEEeeCCEEEEEe-CCCEEEE
Confidence            3455677888788888888775 556664332111100001111111112    236888999888766654 5678888


Q ss_pred             ECCCCcEEEEee-eccCEEEEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeec----ccccceEEEEecCCCCEEEEEe
Q 009993          263 DRALLKCLKVLR-HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNG----AHVGNTKSLARSHTGDFLFTGG  335 (520)
Q Consensus       263 d~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~----~~~~~i~~l~~s~~~~~l~tg~  335 (520)
                      +..+........ ...++..+.+....++... ++.+.++++..+........    .-.+.+.+++|++.|..++++.
T Consensus       111 ~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         111 DLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             EeeccccccccccccccccceecCCceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence            877654444433 4567788887777666666 89999999988864332211    1235577777877777777763

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.29  E-value=0.53  Score=45.24  Aligned_cols=158  Identities=16%  Similarity=0.136  Sum_probs=86.1

Q ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeCCCC---c-eEEE-EecCCCEEEEEeC------CCcEEEEEcccCcceee-ec
Q 009993          154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLG---C-TIRA-VAADKKLLVAGGT------DGFIHCWRAVEVLPHLF-DI  221 (520)
Q Consensus       154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~---~-~v~~-~~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~-~~  221 (520)
                      +.+++.++.|+.|.-.|..+|+.+..+....   . .+.. -..-+..++.|..      .|.|.-+|+.+|+..-. ..
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t  200 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeec
Confidence            3578889999999999999999888764211   1 1100 0012445566543      48899999999874321 11


Q ss_pred             cCCccc---------------cc---eE-----EeccCCCCe-EEEEE--cCCEEEEEec----------------CCeE
Q 009993          222 SGSEKQ---------------NT---QF-----RLWEHEGPI-TSLAL--DLTRIYSGSW----------------DMTV  259 (520)
Q Consensus       222 ~~~~~~---------------~~---~~-----~~~~h~~~v-~~l~~--~~~~l~s~s~----------------dg~v  259 (520)
                      ......               ..   ..     ....-...+ ..+++  ..+.++.+..                ...|
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~si  280 (596)
T d1w6sa_         201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI  280 (596)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred             cCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccc
Confidence            000000               00   00     000001111 12233  2344544432                2458


Q ss_pred             EEEECCCCcEEEEee---ecc-------CEEEEe---eCCC---EEEEEc-CCeEEEEECCCCeeeEEe
Q 009993          260 RVWDRALLKCLKVLR---HSD-------WVYGLA---PHDT---TVASTS-GSDVYIWDTNSGCLLTVV  311 (520)
Q Consensus       260 ~iwd~~~~~~~~~~~---~~~-------~v~~~~---~~~~---~l~~~~-d~~i~iwd~~~~~~~~~~  311 (520)
                      .-.|.++++.+..++   |..       ...-+.   .+++   .++... +|.++++|..+|+.+...
T Consensus       281 vAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~  349 (596)
T d1w6sa_         281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN  349 (596)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeec
Confidence            888999999988776   211       111111   2332   455555 799999999999887543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.73  E-value=0.51  Score=42.46  Aligned_cols=198  Identities=16%  Similarity=0.140  Sum_probs=110.2

Q ss_pred             cCCEEEEEe-cCCeEEEEECCCCcEEEEee--eccCEEEEe----eCCCEEEEEcC-------------------CeEEE
Q 009993          246 DLTRIYSGS-WDMTVRVWDRALLKCLKVLR--HSDWVYGLA----PHDTTVASTSG-------------------SDVYI  299 (520)
Q Consensus       246 ~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~----~~~~~l~~~~d-------------------~~i~i  299 (520)
                      ||++++... .+.+|-+.|+++.++.+.+.  ....+..+.    ++-.+++..+.                   +.+.+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            567776665 67899999999999877554  444555544    45556666543                   23678


Q ss_pred             EECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCC---------------eEEEEEcccCccc------cceeeee
Q 009993          300 WDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG---------------AIHMYEIINDCTE------ANVLLVA  358 (520)
Q Consensus       300 wd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg---------------~i~iwd~~~~~~~------~~~~~~~  358 (520)
                      +|..+.+....+.  -.+....+.++++|+++++.+.+.               .+.+++.......      ....-+.
T Consensus       178 ID~~tm~V~~QV~--V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~  255 (459)
T d1fwxa2         178 VDADKWEVAWQVL--VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  255 (459)
T ss_dssp             EETTTTEEEEEEE--ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EecCCceEEEEee--eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence            9999988877775  344567889999999998876432               2455554221000      0000001


Q ss_pred             eec-------------CCcCCEEEEEecC--CEEEEE-eCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCc
Q 009993          359 TWI-------------PHTGPVNSLAFEF--PWLVSA-AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF  422 (520)
Q Consensus       359 ~~~-------------~h~~~v~~l~~~~--~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (520)
                      .+.             .-......+..+|  .+++++ ..+.++.|+|+++.................  ++.      .
T Consensus       256 VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~--e~e------l  327 (459)
T d1fwxa2         256 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA--EPE------L  327 (459)
T ss_dssp             EEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEE--CCB------C
T ss_pred             eecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEe--ecc------c
Confidence            111             0011223455554  555554 568999999998653332100000000000  000      1


Q ss_pred             ceeeEEEEecCC--EEEEecCCCeEEEEeCCch
Q 009993          423 ECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQA  453 (520)
Q Consensus       423 ~~~v~~~~~~~~--~l~sg~~Dg~v~iwd~~~~  453 (520)
                      ...-+--.|+++  ...|---|..|.-|++...
T Consensus       328 glgPLht~fd~~g~aytslfids~v~kw~~~~~  360 (459)
T d1fwxa2         328 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA  360 (459)
T ss_dssp             CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred             CcCccccccCCCceEEEEeeccceEEEEecchh
Confidence            111223334444  5556668999999999754

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.56  E-value=0.96  Score=43.01  Aligned_cols=77  Identities=10%  Similarity=0.078  Sum_probs=55.6

Q ss_pred             CeEEEEECCCCcEEEEeeeccCEE--EEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCC-EEE
Q 009993          257 MTVRVWDRALLKCLKVLRHSDWVY--GLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD-FLF  332 (520)
Q Consensus       257 g~v~iwd~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l~  332 (520)
                      |.+.-||+.+++.+.......+..  .+...+.+++.++ ||.++.+|.++|+.+..+..+....-.-+.+..+|+ +|+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~  517 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVA  517 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence            678899999999998887554433  3456677888888 999999999999999988754332222345555775 444


Q ss_pred             E
Q 009993          333 T  333 (520)
Q Consensus       333 t  333 (520)
                      +
T Consensus       518 v  518 (560)
T d1kv9a2         518 I  518 (560)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.59  Score=39.73  Aligned_cols=213  Identities=11%  Similarity=0.040  Sum_probs=96.1

Q ss_pred             eEEEEECCCCcE--EEEeCCCCceEEEEecCCCEEEEEeCC---------CcEEEEEcccCcceeeeccCCccccceEEe
Q 009993          165 IVRMWHLEDGFS--IASSKPLGCTIRAVAADKKLLVAGGTD---------GFIHCWRAVEVLPHLFDISGSEKQNTQFRL  233 (520)
Q Consensus       165 ~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~l~sg~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  233 (520)
                      .+.+||+.+++-  +..++...........++..++.|+..         ..+.+||..+......           ..+
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~-----------~~~   88 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPC-----------APM   88 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEEC-----------CCC
T ss_pred             eEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhccccccccccc-----------ccc
Confidence            578999988753  222322111112223456666666531         3456667655422111           011


Q ss_pred             ccCCCCeEEEEEcCCEEEEEecCCe-----EEEEECCCCcEEEEeeec---cCEEEEeeCCCEEEEEc-C-----CeEEE
Q 009993          234 WEHEGPITSLALDLTRIYSGSWDMT-----VRVWDRALLKCLKVLRHS---DWVYGLAPHDTTVASTS-G-----SDVYI  299 (520)
Q Consensus       234 ~~h~~~v~~l~~~~~~l~s~s~dg~-----v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~l~~~~-d-----~~i~i  299 (520)
                      ......-.+..+++..++.++.++.     +..+|..+..........   .....+...+..++.++ +     ..+..
T Consensus        89 p~~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~~~~~~~~  168 (288)
T d1zgka1          89 SVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAEC  168 (288)
T ss_dssp             SSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEE
T ss_pred             cceecceeccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeeeeecceEecCcccccccceEEE
Confidence            1111112233346665555554433     445666655433222111   11122224455555544 3     45888


Q ss_pred             EECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCC-----CeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC
Q 009993          300 WDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-----GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF  374 (520)
Q Consensus       300 wd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  374 (520)
                      ||..+.+-...-.........+.... ++.+++.|+.+     .....+|..+...    ..+.....-......+.+++
T Consensus       169 ~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~r~~~~~~~~~~  243 (288)
T d1zgka1         169 YYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETW----TFVAPMKHRRSALGITVHQG  243 (288)
T ss_dssp             EETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEE----EECCCCSSCCBSCEEEEETT
T ss_pred             eeccccccccccccccccccccccce-eeeEEEecCccccccccceeeeeecceee----ecccCccCcccceEEEEECC
Confidence            99887654322211111111122222 35555665544     2466777665521    11111111112224445567


Q ss_pred             CEEEEEeCCC-----cEEEEeCCc
Q 009993          375 PWLVSAAGDG-----KLSLIDVRK  393 (520)
Q Consensus       375 ~~l~s~s~dg-----~i~vwd~~~  393 (520)
                      +.++.|+.++     .|.+||+.+
T Consensus       244 ~l~v~GG~~~~~~~~~v~~yd~~~  267 (288)
T d1zgka1         244 RIYVLGGYDGHTFLDSVECYDPDT  267 (288)
T ss_dssp             EEEEECCBCSSCBCCEEEEEETTT
T ss_pred             EEEEEecCCCCeecceEEEEECCC
Confidence            7777776544     377888876

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.34  E-value=0.12  Score=49.87  Aligned_cols=73  Identities=12%  Similarity=0.045  Sum_probs=53.4

Q ss_pred             CeEEEEECCCCcEEEEeeeccCEE--EEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCC
Q 009993          257 MTVRVWDRALLKCLKVLRHSDWVY--GLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD  329 (520)
Q Consensus       257 g~v~iwd~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~  329 (520)
                      |.+.-||+.+++.+.......+..  .+...+.++++++ |+.++.+|.++|+.+..+..+....-.-+.|..+|+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~Gk  532 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGR  532 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            678999999999998887544432  3556788888888 999999999999999988743322111244445776

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=95.19  E-value=0.76  Score=38.94  Aligned_cols=221  Identities=15%  Similarity=0.027  Sum_probs=113.2

Q ss_pred             ccEEEEEEccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeecc
Q 009993          143 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS  222 (520)
Q Consensus       143 ~~V~~l~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  222 (520)
                      ..|..++--  ..+.+.-. ||.|..|-....-++..-......+..++......+.- .||.+..|.........    
T Consensus        26 ~~i~~va~G--~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~~~~al-~dg~v~~wG~~~~gq~~----   97 (273)
T d1jtdb_          26 SGVDAIAGG--YFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQTT----   97 (273)
T ss_dssp             SSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSSEEEEE-ETTEEEEEECCTTSTTC----
T ss_pred             CCcEEEEcc--CCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCCCceeee-eeeeeeccCCCcceeec----
Confidence            457777663  33333334 89999997654433222122233445555433333332 48999999754321100    


Q ss_pred             CCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEECCCCcEEEEe-eeccCEEEEeeCCCEEEEEcCCeEEEEE
Q 009993          223 GSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAPHDTTVASTSGSDVYIWD  301 (520)
Q Consensus       223 ~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~l~~~~d~~i~iwd  301 (520)
                               ........+..++......+.. .|+.+..|.-......... .....|..+......++...++.++.|-
T Consensus        98 ---------~~~~~~~~~~~i~~~~~~~~~~-~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~G  167 (273)
T d1jtdb_          98 ---------VPAEARSGVDAIAAGAWASYAL-KDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWG  167 (273)
T ss_dssp             ---------CCGGGGSSCCEEEEETTEEEEE-ETTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEETTEEEEEE
T ss_pred             ---------cccccccceeEEeeeccccccc-ccccceecccCCCCceeeeccCCceEEEEeccceeeeeecccceeEee
Confidence                     0001123344455544443333 4889999974432211111 1334566666666666666688899997


Q ss_pred             CCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEe
Q 009993          302 TNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAA  381 (520)
Q Consensus       302 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s  381 (520)
                      .......... ......|..++..... .++ - .||.|+.|=........  .+.    .....|..|+-...+.+.- 
T Consensus       168 ~~~~g~~~~~-~~~~~~v~~Is~G~~h-~~~-l-~dG~v~~WG~n~~Gql~--~~~----~~~~~v~~I~~G~~~~~~l-  236 (273)
T d1jtdb_         168 DNYFGQTTVP-AEAQSGVDDVAGGIFH-SLA-L-KDGKVIAWGDNRYKQTT--VPT----EALSGVSAIASGEWYSLAL-  236 (273)
T ss_dssp             CCTTSTTSCC-GGGSSSEEEEEECSSE-EEE-E-ETTEEEEEECCTTSTTC--CCG----GGGSSCCEEEECSSCEEEE-
T ss_pred             cccCCccccc-ccccCCccceecccee-eEE-E-ecCcEEEcCCCCCCccC--CCc----cCCCCcEEEEeCcceEEEE-
Confidence            6543222111 1245567777654322 222 2 37999988654332111  111    1223467777655443333 


Q ss_pred             CCCcEEEEeCC
Q 009993          382 GDGKLSLIDVR  392 (520)
Q Consensus       382 ~dg~i~vwd~~  392 (520)
                      .||.|..|--.
T Consensus       237 ~~g~v~~WG~~  247 (273)
T d1jtdb_         237 KNGKVIAWGSS  247 (273)
T ss_dssp             ETTEEEEESTT
T ss_pred             ECCEEEEECCC
Confidence            48999999654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.97  E-value=1.6  Score=41.54  Aligned_cols=63  Identities=10%  Similarity=-0.029  Sum_probs=44.8

Q ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeCCCC---------ceEEEEecCCCEEEEEeCCCcEEEEEcccCcc
Q 009993          154 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLG---------CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLP  216 (520)
Q Consensus       154 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~  216 (520)
                      +..|+.++.++.|.-.|..+|+.+.++....         .....+...+..++.++.|+.+...|..+++.
T Consensus        68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~t~~~~l~alda~tG~~  139 (582)
T d1flga_          68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKV  139 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCE
T ss_pred             CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEeCCceEEecCCCeEEEecccccce
Confidence            4567888889999999999999998763210         00011223356788899999999999988853

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=94.86  E-value=0.95  Score=38.30  Aligned_cols=183  Identities=14%  Similarity=0.005  Sum_probs=94.8

Q ss_pred             ceEEEEecCCCEEEEEeCCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCeEEEEEcCCEEEEEecCCeEEEEEC
Q 009993          185 CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDR  264 (520)
Q Consensus       185 ~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~v~iwd~  264 (520)
                      ..|..++......+.-. ||.|..|-.....+.-             .-......|..+.......+.- .|+.+..|..
T Consensus        26 ~~i~~va~G~~h~~al~-dG~v~~wG~N~~GQlG-------------~~~~~~~~v~~v~~G~~~~~al-~dg~v~~wG~   90 (273)
T d1jtdb_          26 SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLT-------------MPAATQSGVDAIAAGNYHSLAL-KDGEVIAWGG   90 (273)
T ss_dssp             SSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTS-------------CCGGGGSCCCEEEECSSEEEEE-ETTEEEEEEC
T ss_pred             CCcEEEEccCCEEEEEE-CCEEEEEeCCCCCcee-------------eeecccccceEEecCCCceeee-eeeeeeccCC
Confidence            45777775555555445 8999999764432110             0011234456666633333333 4899999976


Q ss_pred             CCCcEEEE-eeeccCEEEEeeCCCEEEEEcCCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEE
Q 009993          265 ALLKCLKV-LRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY  343 (520)
Q Consensus       265 ~~~~~~~~-~~~~~~v~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iw  343 (520)
                      ...-.... ......+..+.......+...|+.+..|............ .....|..++-.  ... +....++.++.|
T Consensus        91 ~~~gq~~~~~~~~~~~~~i~~~~~~~~~~~dg~v~~~g~~~~~~~~~~~-~~~~~v~~~~~~--~~~-~~~~~~g~~~~~  166 (273)
T d1jtdb_          91 NEDGQTTVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTTVPA-EAQSGVTALDGG--VYT-ALAVKNGGVIAW  166 (273)
T ss_dssp             CTTSTTCCCGGGGSSCCEEEEETTEEEEEETTEEEEEECCTTSTTSCCG-GGGSSEEEEEEC--SSE-EEEEETTEEEEE
T ss_pred             CcceeeccccccccceeEEeeecccccccccccceecccCCCCceeeec-cCCceEEEEecc--cee-eeeecccceeEe
Confidence            43211111 1122334445544444444458889998754432221111 123345444432  222 233357888888


Q ss_pred             EcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEeCCCcEEEEeCCc
Q 009993          344 EIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRK  393 (520)
Q Consensus       344 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~  393 (520)
                      -......      ..........|..|+....+.+.-. ||.|+-|=...
T Consensus       167 G~~~~g~------~~~~~~~~~~v~~Is~G~~h~~~l~-dG~v~~WG~n~  209 (273)
T d1jtdb_         167 GDNYFGQ------TTVPAEAQSGVDDVAGGIFHSLALK-DGKVIAWGDNR  209 (273)
T ss_dssp             ECCTTST------TSCCGGGSSSEEEEEECSSEEEEEE-TTEEEEEECCT
T ss_pred             ecccCCc------ccccccccCCccceeccceeeEEEe-cCcEEEcCCCC
Confidence            7654421      1111123457888887665544444 89999997654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.66  E-value=2  Score=40.96  Aligned_cols=77  Identities=16%  Similarity=0.078  Sum_probs=57.3

Q ss_pred             CeEEEEECCCCcEEEEeeeccCEE--EEeeCCCEEEEEc-CCeEEEEECCCCeeeEEeecccccceEEEEecCCCC-EEE
Q 009993          257 MTVRVWDRALLKCLKVLRHSDWVY--GLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD-FLF  332 (520)
Q Consensus       257 g~v~iwd~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l~  332 (520)
                      |.+.-+|+.+++.+.......++.  .++..+.++++++ |+.++.+|.++|+.+..+..+....-.-+.|..+|+ +++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~  545 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence            678899999999998887555444  2456778888888 999999999999999988754433333356666885 444


Q ss_pred             E
Q 009993          333 T  333 (520)
Q Consensus       333 t  333 (520)
                      .
T Consensus       546 i  546 (582)
T d1flga_         546 V  546 (582)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.09  E-value=1.4  Score=37.00  Aligned_cols=193  Identities=13%  Similarity=0.060  Sum_probs=110.9

Q ss_pred             cCCCCeEEEEEc--CCEEEEE-ecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEE-c-CCeEEEEECCCCe
Q 009993          235 EHEGPITSLALD--LTRIYSG-SWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVAST-S-GSDVYIWDTNSGC  306 (520)
Q Consensus       235 ~h~~~v~~l~~~--~~~l~s~-s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~-~-d~~i~iwd~~~~~  306 (520)
                      .+...+..++||  .+.++.. ..++.|+..++........+. ....+.+++  .-+..|+.+ . .+.|.+.++....
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~  112 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ  112 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCce
Confidence            344557788884  4555554 456789888887665544443 224556666  335555544 4 6889999987665


Q ss_pred             eeEEeecccccceEEEEecCCCCEEEEEeCC-Ce--EEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEEE-
Q 009993          307 LLTVVNGAHVGNTKSLARSHTGDFLFTGGED-GA--IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSA-  380 (520)
Q Consensus       307 ~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d-g~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~-  380 (520)
                      ....+. .....+..+++.|...+++..... +.  |.--++....      ........-...++|++++  +.|+.+ 
T Consensus       113 ~~~l~~-~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~------~~~i~~~~~~~P~glaiD~~~~~lYw~d  185 (263)
T d1npea_         113 RRVLFD-TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN------RRILAQDNLGLPNGLTFDAFSSQLCWVD  185 (263)
T ss_dssp             CEEEEC-SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC------CEEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred             EEEEec-ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC------ceeeeeecccccceEEEeecCcEEEEEe
Confidence            433332 234678899999988777654332 23  4444444431      1112223335678899874  555444 


Q ss_pred             eCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCCEE-EEecCCCeEEEEeCCchH
Q 009993          381 AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRI-VCGGEEGIVRIWNFSQAF  454 (520)
Q Consensus       381 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l-~sg~~Dg~v~iwd~~~~~  454 (520)
                      ...+.|...|+......                   ..+.+... -.+++..++.| .+-...+.|...|..++.
T Consensus       186 ~~~~~I~~~~~~g~~~~-------------------~v~~~~~~-P~~lav~~~~lYwtd~~~~~I~~~~~~~g~  240 (263)
T d1npea_         186 AGTHRAECLNPAQPGRR-------------------KVLEGLQY-PFAVTSYGKNLYYTDWKTNSVIAMDLAISK  240 (263)
T ss_dssp             TTTTEEEEEETTEEEEE-------------------EEEECCCS-EEEEEEETTEEEEEETTTTEEEEEETTTTE
T ss_pred             CCCCEEEEEECCCCCeE-------------------EEECCCCC-cEEEEEECCEEEEEECCCCEEEEEECCCCc
Confidence            56788988888753110                   01111111 13455556644 454466788888887654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.55  E-value=1.9  Score=36.61  Aligned_cols=217  Identities=9%  Similarity=0.044  Sum_probs=123.5

Q ss_pred             EccCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcceeeeccCCcccc
Q 009993          150 VLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQN  228 (520)
Q Consensus       150 ~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~  228 (520)
                      .+|..+.||--+ ..++.+||+++.+.++.+.-.. .|.-+. -+.+.|+..+ +..|+-|+++....            
T Consensus        70 MhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~~L~lVT-~taVYHW~~~g~s~------------  134 (327)
T d1utca2          70 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT-DNAVYHWSMEGESQ------------  134 (327)
T ss_dssp             ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSSSEEEEEC-SSEEEEEESSSSCC------------
T ss_pred             cCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCCCEEEEEc-CCceEEEcccCCCC------------
Confidence            468888777665 5689999999999988776443 444555 4455555544 35799999854321            


Q ss_pred             ceEEeccCC----CCeEEEEE--cCCEEEEEe-------cCCeEEEEECCCCcEEEEeeeccCEEEEeeC----CC-EEE
Q 009993          229 TQFRLWEHE----GPITSLAL--DLTRIYSGS-------WDMTVRVWDRALLKCLKVLRHSDWVYGLAPH----DT-TVA  290 (520)
Q Consensus       229 ~~~~~~~h~----~~v~~l~~--~~~~l~s~s-------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~----~~-~l~  290 (520)
                      +...+..|.    ..|.....  +.++++..+       -.|.+.+|..+.......-.|...-..+..+    .. +++
T Consensus       135 P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~  214 (327)
T d1utca2         135 PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFC  214 (327)
T ss_dssp             CEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEE
T ss_pred             chhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEE
Confidence            222222221    23333333  334433221       1367889988765433222244433334322    11 222


Q ss_pred             EEc----CCeEEEEECCCCe---e-----eEEee---cccccceEEEEecCCCCEEEEEeCCCeEEEEEcccCcccccee
Q 009993          291 STS----GSDVYIWDTNSGC---L-----LTVVN---GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL  355 (520)
Q Consensus       291 ~~~----d~~i~iwd~~~~~---~-----~~~~~---~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~  355 (520)
                      .+.    .++++|.++....   .     ...+.   .....-..++..++....+..-+.-|.|++||+.++      .
T Consensus       215 fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTg------t  288 (327)
T d1utca2         215 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG------T  288 (327)
T ss_dssp             EEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC------C
T ss_pred             EEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccc------c
Confidence            222    3678998886521   1     11111   112344568889998999999999999999999999      5


Q ss_pred             eeeeecCCcCCEEEEEec--CCEEEEEeCCCcEE
Q 009993          356 LVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLS  387 (520)
Q Consensus       356 ~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~  387 (520)
                      ++..-+-...+|-.-+-+  ..-+++...+|.|.
T Consensus       289 ~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         289 CIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            555444444555433332  23555555666554

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.25  E-value=2  Score=36.07  Aligned_cols=216  Identities=13%  Similarity=-0.011  Sum_probs=119.4

Q ss_pred             CeEEEEECCCCcEEEEeCCCCceEEEEe--cCCCEEEEEe-CCCcEEEEEcccCcceeeeccCCccccceEEeccCCCCe
Q 009993          164 SIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGG-TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPI  240 (520)
Q Consensus       164 g~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  240 (520)
                      ..|+-.++.+........+.. .+.++.  +..+.|+-.. ..+.|...++....         ...............+
T Consensus        10 ~~I~~~~l~~~~~~~~~~~~~-~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~---------~~~~~~~~~~~~~~~p   79 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIPNLR-NVVALDTEVASNRIYWSDLSQRMICSTQLDRAH---------GVSSYDTVISRDIQAP   79 (266)
T ss_dssp             SSEEEEETTSCCCEEEECSCS-SEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------CEEEECSSCSCC
T ss_pred             CeEEEEECCCCcceeeeCCCC-ceEEEEEEeCCCEEEEEECCCCEEEEEEecCCC---------CCcceEEEEeCCCCCc
Confidence            348888887665443333322 334444  5556555443 44556555543211         0001111222233456


Q ss_pred             EEEEEc--CCEEE-EEecCCeEEEEECCCCcEEEEee-eccCEEEEe--eCCCEEEEEc---CCeEEEEECCCCeeeEEe
Q 009993          241 TSLALD--LTRIY-SGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS---GSDVYIWDTNSGCLLTVV  311 (520)
Q Consensus       241 ~~l~~~--~~~l~-s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~---d~~i~iwd~~~~~~~~~~  311 (520)
                      ..|++|  ++.|+ +-...+.|.+.++........+. .......+.  +...+++...   .+.|.-.++.........
T Consensus        80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~  159 (266)
T d1ijqa1          80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  159 (266)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred             ceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccc
Confidence            667773  45444 44566789999998766544444 334455554  5444444433   356777777654443333


Q ss_pred             ecccccceEEEEecCCCCEEEEE-eCCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecCCEEEEEe-CCCcEEEE
Q 009993          312 NGAHVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAA-GDGKLSLI  389 (520)
Q Consensus       312 ~~~~~~~i~~l~~s~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s-~dg~i~vw  389 (520)
                      . ........+++.+.++.|..+ ...+.|...++.....    ..+...........+|++..++|.... .++.|...
T Consensus       160 ~-~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~----~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~  234 (266)
T d1ijqa1         160 T-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR----KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSA  234 (266)
T ss_dssp             C-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEE
T ss_pred             c-cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCE----EEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEE
Confidence            2 234567899999887766655 5568899999866521    222222333345678888777666664 56778777


Q ss_pred             eCCcc
Q 009993          390 DVRKL  394 (520)
Q Consensus       390 d~~~~  394 (520)
                      +..++
T Consensus       235 ~~~~g  239 (266)
T d1ijqa1         235 NRLTG  239 (266)
T ss_dssp             ETTTC
T ss_pred             ECCCC
Confidence            76653

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.50  E-value=3.3  Score=34.54  Aligned_cols=195  Identities=7%  Similarity=-0.012  Sum_probs=110.3

Q ss_pred             hccccccEEEEEEccCCCEEEEE-eCCCeEEEEECCCCcEEEEeCCC--CceEEEEecCCCEEE-EEeCCCcEEEEEccc
Q 009993          138 LYGHTEAVLTVFVLASAKLLFTS-GYDSIVRMWHLEDGFSIASSKPL--GCTIRAVAADKKLLV-AGGTDGFIHCWRAVE  213 (520)
Q Consensus       138 l~~h~~~V~~l~~~~~~~~l~sg-s~dg~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~l~-sg~~dg~i~vwd~~~  213 (520)
                      +..+...+.+++|++..+.|+-. ..++.|+..++..+.........  ...-.++..-+..|+ +-...+.|.+.++..
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            44455668889999877766655 45688988888766544444322  223344554455554 545567888888754


Q ss_pred             CcceeeeccCCccccceEEeccCCCCeEEEEEcC--CEEEEEec---CCeEEEEECCCCcEEEEee-eccCEEEEe--eC
Q 009993          214 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSW---DMTVRVWDRALLKCLKVLR-HSDWVYGLA--PH  285 (520)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~---dg~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~  285 (520)
                      ...             ..........+..+++++  .+++....   ...|.--++.......... .-....+++  +.
T Consensus       111 ~~~-------------~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~  177 (263)
T d1npea_         111 TQR-------------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAF  177 (263)
T ss_dssp             CSC-------------EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETT
T ss_pred             ceE-------------EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeec
Confidence            321             111222335677888843  45554332   2234444554433322222 223345555  55


Q ss_pred             CCEEEEEc--CCeEEEEECCCCeeeEEeecccccceEEEEecCCCCEEEEEeCCCeEEEEEcccC
Q 009993          286 DTTVASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  348 (520)
Q Consensus       286 ~~~l~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~dg~i~iwd~~~~  348 (520)
                      ++.|+.+.  .+.|...|+........+. +. ....++++. ++.+.++-...+.|...|..++
T Consensus       178 ~~~lYw~d~~~~~I~~~~~~g~~~~~v~~-~~-~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g  239 (263)
T d1npea_         178 SSQLCWVDAGTHRAECLNPAQPGRRKVLE-GL-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAIS  239 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETTEEEEEEEEE-CC-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTT
T ss_pred             CcEEEEEeCCCCEEEEEECCCCCeEEEEC-CC-CCcEEEEEE-CCEEEEEECCCCEEEEEECCCC
Confidence            66555543  6889999997655443333 22 234577775 3344445556788888888877

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.17  E-value=3.6  Score=34.39  Aligned_cols=104  Identities=9%  Similarity=-0.062  Sum_probs=47.5

Q ss_pred             EEcCCEEEEEec---------CCeEEEEECCCCcEEEEee--e-ccCEEEEeeCCCEEEEEc-C-----CeEEEEECCCC
Q 009993          244 ALDLTRIYSGSW---------DMTVRVWDRALLKCLKVLR--H-SDWVYGLAPHDTTVASTS-G-----SDVYIWDTNSG  305 (520)
Q Consensus       244 ~~~~~~l~s~s~---------dg~v~iwd~~~~~~~~~~~--~-~~~v~~~~~~~~~l~~~~-d-----~~i~iwd~~~~  305 (520)
                      ..++..++.|+.         -..+.+||..+......-.  . ...-.+...+++.++.+. +     .....+|..+.
T Consensus        48 ~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~  127 (288)
T d1zgka1          48 VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERD  127 (288)
T ss_dssp             EETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             EECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceeccccceeeEEecceecccccceeeeeccccC
Confidence            335555565553         1356788877655433221  1 111122334666665554 3     23556777765


Q ss_pred             eeeEEeecccccceEEEEecCCCCEEEEEeCC-----CeEEEEEcccC
Q 009993          306 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-----GAIHMYEIIND  348 (520)
Q Consensus       306 ~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~~d-----g~i~iwd~~~~  348 (520)
                      .-...-.......-.++... ++..++.|+.+     ..+..||..+.
T Consensus       128 ~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~  174 (288)
T d1zgka1         128 EWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERN  174 (288)
T ss_dssp             EEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred             ccccccccccccccceeeee-eecceEecCcccccccceEEEeecccc
Confidence            43322111111111112222 34455555443     34777887665

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.88  E-value=6.6  Score=35.32  Aligned_cols=239  Identities=11%  Similarity=0.011  Sum_probs=118.3

Q ss_pred             ccccccEEEEEEccCCCEEEEE-eC----CCeEEEEECCCCcEEEE-eCCCCceEEEEecCCCEEEEEeCC---------
Q 009993          139 YGHTEAVLTVFVLASAKLLFTS-GY----DSIVRMWHLEDGFSIAS-SKPLGCTIRAVAADKKLLVAGGTD---------  203 (520)
Q Consensus       139 ~~h~~~V~~l~~~~~~~~l~sg-s~----dg~v~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~l~sg~~d---------  203 (520)
                      +++.-.+..++++|++++++-+ +.    -..++++|+.+++.+.. +..-...-..+.+++..|+-...+         
T Consensus       121 ~~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~  200 (430)
T d1qfma1         121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (430)
T ss_dssp             SSSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             ccccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCccccc
Confidence            3455455677889999988843 22    34699999999987642 222112334567788876644322         


Q ss_pred             -------CcEEEEEcccCcceeeeccCCccccceEEeccCC--CCeEEEEE--cCCEEEEEec---CCeEEEE--ECCCC
Q 009993          204 -------GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE--GPITSLAL--DLTRIYSGSW---DMTVRVW--DRALL  267 (520)
Q Consensus       204 -------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~--~~~~l~s~s~---dg~v~iw--d~~~~  267 (520)
                             ..|..+.+.+..           ......+....  ..+..+..  ++++++....   +....+|  |....
T Consensus       201 ~~~~~~~~~v~~h~lgt~~-----------~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~  269 (430)
T d1qfma1         201 ETSTNLHQKLYYHVLGTDQ-----------SEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQE  269 (430)
T ss_dssp             CCCCCCCCEEEEEETTSCG-----------GGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGS
T ss_pred             ccccCCcceEEEEECCCCc-----------cccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCc
Confidence                   246666665432           11222222222  23444444  6677654322   3333444  44322


Q ss_pred             c--------EEEEee-eccCEEEEeeCCC-EEEEEc----CCeEEEEECCCCee--eEEeecccccceEEEEecCCCCEE
Q 009993          268 K--------CLKVLR-HSDWVYGLAPHDT-TVASTS----GSDVYIWDTNSGCL--LTVVNGAHVGNTKSLARSHTGDFL  331 (520)
Q Consensus       268 ~--------~~~~~~-~~~~v~~~~~~~~-~l~~~~----d~~i~iwd~~~~~~--~~~~~~~~~~~i~~l~~s~~~~~l  331 (520)
                      .        ....+. ......-+..++. +++...    ++.|...++.....  ...+...+...+..-.+...+++|
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~l  349 (430)
T d1qfma1         270 SNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFL  349 (430)
T ss_dssp             SSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEE
T ss_pred             ccccccccceeEeecccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEE
Confidence            1        111122 2223333443443 333333    25677777765432  223332344445443444445556


Q ss_pred             EEE-eCCC--eEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--C-EEEEEeC---CCcEEEEeCCcc
Q 009993          332 FTG-GEDG--AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P-WLVSAAG---DGKLSLIDVRKL  394 (520)
Q Consensus       332 ~tg-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~s~---dg~i~vwd~~~~  394 (520)
                      +.. ..++  .|+++++.++.      .........+.|..+..++  + ..++-+.   =.++.-+|+.++
T Consensus       350 vl~~~~~~~~~l~v~~~~~~~------~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~  415 (430)
T d1qfma1         350 VLCYLHDVKNTLQLHDLATGA------LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE  415 (430)
T ss_dssp             EEEEEETTEEEEEEEETTTCC------EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred             EEEEEcCCEeEEEEEECCCCc------EEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCC
Confidence            544 4554  47889887773      2222223334455444432  2 3333222   266788888764

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.12  E-value=5.3  Score=33.20  Aligned_cols=195  Identities=13%  Similarity=0.005  Sum_probs=105.8

Q ss_pred             CCCCeEEEEEc--CCEEEEEe-cCCeEEEEECCCCcE---EE-Eee-eccCEEEEe--eCCCEEEEEc--CCeEEEEECC
Q 009993          236 HEGPITSLALD--LTRIYSGS-WDMTVRVWDRALLKC---LK-VLR-HSDWVYGLA--PHDTTVASTS--GSDVYIWDTN  303 (520)
Q Consensus       236 h~~~v~~l~~~--~~~l~s~s-~dg~v~iwd~~~~~~---~~-~~~-~~~~v~~~~--~~~~~l~~~~--d~~i~iwd~~  303 (520)
                      ....+.+++||  .+.++-.. .++.|.-.++.....   .. .+. ....+.+++  +.+..|+.+.  .+.|.+.++.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            44567788884  46665554 456677666643221   11 111 122333444  4455555544  6889999998


Q ss_pred             CCeeeEEeecccccceEEEEecCCCCEEEEEe--CCCeEEEEEcccCccccceeeeeeecCCcCCEEEEEecC--CEEEE
Q 009993          304 SGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG--EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVS  379 (520)
Q Consensus       304 ~~~~~~~~~~~~~~~i~~l~~s~~~~~l~tg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s  379 (520)
                      .......+. ........++++|...+|....  ..+.|.-.++....      ........-...+++++++  +.|+.
T Consensus       108 g~~~~~~~~-~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~------~~~l~~~~~~~p~gl~iD~~~~~lYw  180 (266)
T d1ijqa1         108 GVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD------IYSLVTENIQWPNGITLDLLSGRLYW  180 (266)
T ss_dssp             SSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC------EEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             CceEEEEEc-CCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc------eecccccccceeeEEEeeccccEEEE
Confidence            766544444 3456788999999766666543  34456666665541      2222223345678888874  45554


Q ss_pred             E-eCCCcEEEEeCCcccccCCCCCCCceeeeeecCCCcccccCcceeeEEEEecCC-EEEEecCCCeEEEEeCCchH
Q 009993          380 A-AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAF  454 (520)
Q Consensus       380 ~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~v~iwd~~~~~  454 (520)
                      + ...+.|...++......          .+.       ..........+++..++ ...+-..++.|...+..++.
T Consensus       181 ~d~~~~~I~~~~~dG~~~~----------~~~-------~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         181 VDSKLHSISSIDVNGGNRK----------TIL-------EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS  240 (266)
T ss_dssp             EETTTTEEEEEETTSCSCE----------EEE-------ECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred             ecCCcCEEEEEECCCCCEE----------EEE-------eCCCcccccEEEEEECCEEEEEECCCCeEEEEECCCCc
Confidence            4 55678888888652100          000       00111122345555566 44444567778777766653

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=88.38  E-value=7.3  Score=33.86  Aligned_cols=191  Identities=13%  Similarity=0.161  Sum_probs=104.5

Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEE----ecCCC--EEEEEeC--CC--cEEEEEcccCcceeeec
Q 009993          152 ASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV----AADKK--LLVAGGT--DG--FIHCWRAVEVLPHLFDI  221 (520)
Q Consensus       152 ~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~----~~~~~--~l~sg~~--dg--~i~vwd~~~~~~~~~~~  221 (520)
                      |+..+++.....+-|.+||+. |+.+..+......-..+    ..++.  -+++++.  ++  +|.+|.+......+...
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~  116 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI  116 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence            456788888888789999985 88887775332222222    22222  3445542  23  57788775432222211


Q ss_pred             cCCccccceEEeccCCCCeEEEEE-----cCC-EEEEEecCCeEEEEECC---CC----cEEEEeeeccCEEEEe--eCC
Q 009993          222 SGSEKQNTQFRLWEHEGPITSLAL-----DLT-RIYSGSWDMTVRVWDRA---LL----KCLKVLRHSDWVYGLA--PHD  286 (520)
Q Consensus       222 ~~~~~~~~~~~~~~h~~~v~~l~~-----~~~-~l~s~s~dg~v~iwd~~---~~----~~~~~~~~~~~v~~~~--~~~  286 (520)
                      .....  .   ...-...+..+|+     ++. +++....+|.+..|.+.   .+    +.++.+.....+..+.  ...
T Consensus       117 ~~~~~--p---~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~  191 (353)
T d1h6la_         117 TDPNR--P---IASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEY  191 (353)
T ss_dssp             SCSSS--C---EECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTT
T ss_pred             ccccc--c---cccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCC
Confidence            11100  0   0011223556666     233 56777788999888763   22    3445555566666655  455


Q ss_pred             CEEEEEc-CCeEEEEECCC-----CeeeEEeec-ccccceEEEEecC--CCC-EEE-EEeCCCeEEEEEcccC
Q 009993          287 TTVASTS-GSDVYIWDTNS-----GCLLTVVNG-AHVGNTKSLARSH--TGD-FLF-TGGEDGAIHMYEIIND  348 (520)
Q Consensus       287 ~~l~~~~-d~~i~iwd~~~-----~~~~~~~~~-~~~~~i~~l~~s~--~~~-~l~-tg~~dg~i~iwd~~~~  348 (520)
                      ..|+.+. +..|..++...     +..+..... .....+..++.-.  ++. +|+ +.-.+++..+||....
T Consensus       192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            6777777 66676666542     222222222 1345677776532  322 444 4445788999998764

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=85.92  E-value=6.9  Score=31.01  Aligned_cols=184  Identities=10%  Similarity=0.073  Sum_probs=96.7

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcceee-eccCCccccceE
Q 009993          153 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLF-DISGSEKQNTQF  231 (520)
Q Consensus       153 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~  231 (520)
                      +.++++.+...|.+.++-+..++.++-.+..-..+.  .|...      -|-.+.+-|+..|....- ............
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtkePI~~~~--~Pk~~------ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~   96 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVL--DPHYG------VGRVILVRDVSKGAEQHALFKVNTSRPGEEQ   96 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCSSCCSEEC--EECTT------BSEEEEEEECSTTSCCEEEEEEETTSTTCEE
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEecccccCcC--CCccC------cceEEEEeehhcCcceeeEEEEccCCCCeee
Confidence            445888888899999999887776553332111111  12211      111222333333322110 000001012333


Q ss_pred             EeccCC-CCeEEEEEc-CCEEEEEecCCeEEEEECCCCcEEEEee--eccCEEEE--------e---eCCCEEEEEc--C
Q 009993          232 RLWEHE-GPITSLALD-LTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGL--------A---PHDTTVASTS--G  294 (520)
Q Consensus       232 ~~~~h~-~~v~~l~~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~--------~---~~~~~l~~~~--d  294 (520)
                      .+.... -.|.+++++ .+..++|+....+.+|-++.|+..+...  .-+.|+.+        .   ....-++++.  .
T Consensus        97 ~i~spk~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~S  176 (313)
T d2hu7a1          97 RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS  176 (313)
T ss_dssp             ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTT
T ss_pred             EecCCceEEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEeccc
Confidence            343333 567788884 4778888888888899888876554333  22233332        2   2233344444  6


Q ss_pred             CeEEEEECCCCeeeEEee-----------c----------c------------------cccceEEEEecCCCCEEEEEe
Q 009993          295 SDVYIWDTNSGCLLTVVN-----------G----------A------------------HVGNTKSLARSHTGDFLFTGG  335 (520)
Q Consensus       295 ~~i~iwd~~~~~~~~~~~-----------~----------~------------------~~~~i~~l~~s~~~~~l~tg~  335 (520)
                      |.+++++...|..-....           .          .                  ..-.|+-+-+.|++++++.+-
T Consensus       177 G~lri~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiak  256 (313)
T d2hu7a1         177 GGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVAR  256 (313)
T ss_dssp             EEEEEECCSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEE
T ss_pred             CCEEEecCCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEe
Confidence            788888877654321110           0          0                  011233345788888888888


Q ss_pred             CCCeEEEEE
Q 009993          336 EDGAIHMYE  344 (520)
Q Consensus       336 ~dg~i~iwd  344 (520)
                      .||.-++|.
T Consensus       257 rdG~s~lF~  265 (313)
T d2hu7a1         257 REGRSAVFI  265 (313)
T ss_dssp             ETTEEEEEE
T ss_pred             cCCchheee
Confidence            888888876

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=85.88  E-value=10  Score=32.90  Aligned_cols=142  Identities=13%  Similarity=0.191  Sum_probs=82.8

Q ss_pred             CEEEEEecCCeEEEEECCCCcEEEEeeeccCEEEEe------eCCC--EEEEEc--C---CeEEEEECCC-CeeeEEeec
Q 009993          248 TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA------PHDT--TVASTS--G---SDVYIWDTNS-GCLLTVVNG  313 (520)
Q Consensus       248 ~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~------~~~~--~l~~~~--d---~~i~iwd~~~-~~~~~~~~~  313 (520)
                      .+++....++-|.+||+. |+.+..+. .+.++.+.      ..+.  .+++++  +   .+|.+|.+.. ...+..+..
T Consensus        41 SlI~gTdK~~Gl~vYdL~-G~~l~~~~-~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~  118 (353)
T d1h6la_          41 SKLITTNKKSGLAVYSLE-GKMLHSYH-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITD  118 (353)
T ss_dssp             CEEEEEETTSCCEEEETT-CCEEEECC-SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSC
T ss_pred             cEEEEEcCcCCEEEEcCC-CcEEEecc-cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccc
Confidence            456666666679999985 77776664 34455544      1222  344444  2   2577776642 222333321


Q ss_pred             c------cccceEEEEe--cCC-CC-EEEEEeCCCeEEEEEcccCcc-ccceeeeeeecCCcCCEEEEEecC--CEEEEE
Q 009993          314 A------HVGNTKSLAR--SHT-GD-FLFTGGEDGAIHMYEIINDCT-EANVLLVATWIPHTGPVNSLAFEF--PWLVSA  380 (520)
Q Consensus       314 ~------~~~~i~~l~~--s~~-~~-~l~tg~~dg~i~iwd~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~  380 (520)
                      .      -...++.+|+  ++. +. ++++...+|.+..|.+..... ......++.+.. ...+-.|.+++  ..|+.+
T Consensus       119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde~~~Lyis  197 (353)
T d1h6la_         119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDEYGSLYIA  197 (353)
T ss_dssp             SSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETTTTEEEEE
T ss_pred             cccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEEeCCCCcEEEe
Confidence            1      1124666776  664 44 566778899999998754321 122244555543 34678888876  688888


Q ss_pred             eCCCcEEEEeCC
Q 009993          381 AGDGKLSLIDVR  392 (520)
Q Consensus       381 s~dg~i~vwd~~  392 (520)
                      -.+.-|..++..
T Consensus       198 EE~~Giw~~~a~  209 (353)
T d1h6la_         198 EEDEAIWKFSAE  209 (353)
T ss_dssp             ETTTEEEEEESS
T ss_pred             cCccceEEEEec
Confidence            887666555543