Citrus Sinensis ID: 010008

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520
Protein Sequence
MGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRPPSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccEEEcccccccHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccccEEEcccccccccccccccccccccEEEEEccEEEccccccccccccHHHHHHHHHHHcccEEEEccccccccccHHHHHHHHHHHccEEEEHHHHHHHHHHccccccccccccEEccccccccccccccEEEEEccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccEEEEEEcccccccHHHHHHHHHHcccccccccccccccccccccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEccccccccccEcccccccEEccccccHHccccHHHHccccccccccccHcccccHHHHHcccHHHHcHHHHHHHHHHHHHHHHcEEcccccccccHHHHHHHccHHHHccccEEccEEcccccHHHHHHHHHHHHHHHHHHcccHHHcccEcccccHHHHHHHHHHHHcccccEEEEEcHHHcccHHHccHHHcccccHHHHHcEEEEEcEccccccEcHHHHHHHHHHHcccEEEEccccccccccHHHHHHHHHHHccEEEEEccccHHHHHccccccccccccEEEEEccccccccccEEEEEcccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccEEHHHcccccEEEEEcHHHcccHHHHHHHHHHccEEcEEcccccccccccccEEEEEcHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mgslqqpiwvkgprlpsegsvmvgfpnqirlnmvkpcrcssiegslvtgrppssvsvpipeiggdgssfvdyslgeadpeVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCltnkyseglpgkryyggneyIDELETLCQKRALAAFnldenkwgvnvqplsgspanfEVYTAILkphdrimgldlphgghlshgfmtpkrrvsgtsiyfesmpyrldestglvdydmLEKTAILFRPKliiagasayprdfdyprMRQIADAVGALLMMDMAHISGLVAAsvvadpfkycdvvtttthkslrgprggmiffkkdpvlgVELESainnavfpglqggphnhtiGGLAVCLkhaqspefkvyqNKVVSNCRALASRLVELGYKlvsggsdnhlvlvdlrpmgidgaRVEKILDMASITlnknsvpgdksalvpggirigspamttrgfseKEFVAIADFIHEGVEITLEAKKLVQgsklqdfmnfvtspnfslmNNVADLRGRVEalttqfpipgv
Flexible Loop (DISEMBL)
mgslqqpiwvkgprlpsegsvMVGFPNQIRLNMVKPCRCSSIegslvtgrppssVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCltnkyseglpgkRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAsayprdfdyprMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTtthkslrgprggmiFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVsggsdnhlvlVDLRPMGIDGARVEKILDMASItlnknsvpgdksalvpGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEalttqfpipgv
Low Complexity Region (SEG)
MGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRppssvsvpIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV
Disordered region (IsUnstruct)
********W**********SVMVGFPNQIRLNMVKPCRCSSIEGSLV********************SFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSV*****ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALT********
Disordered Region (DISOPRED)
*********************************************************************VDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTS***S*MNNVADLRGRVEALTTQFPIPGV
Disordered Region (DISEMBL)
MGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRPPSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV
Disordered Region (DISPRO)
***LQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVT*****************GSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRPPSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	520	2.2.26 [Sep-21-2011]
Q9SZJ5	517	Serine hydroxymethyltrans	no	no	0.907	0.912	0.591	1e-171
P50433	518	Serine hydroxymethyltrans	N/A	no	0.848	0.851	0.624	1e-168
P34899	518	Serine hydroxymethyltrans	N/A	no	0.848	0.851	0.615	1e-167
P49358	517	Serine hydroxymethyltrans	N/A	no	0.844	0.849	0.623	1e-165
P49357	517	Serine hydroxymethyltrans	N/A	no	0.846	0.851	0.611	1e-163
P34897	504	Serine hydroxymethyltrans	yes	no	0.853	0.880	0.600	1e-162
Q5E9P9	484	Serine hydroxymethyltrans	yes	no	0.857	0.921	0.606	1e-162
P14519	504	Serine hydroxymethyltrans	yes	no	0.851	0.878	0.603	1e-162
Q3SZ20	504	Serine hydroxymethyltrans	no	no	0.851	0.878	0.599	1e-162
P35623	484	Serine hydroxymethyltrans	N/A	no	0.857	0.921	0.606	1e-161

>sp|Q9SZJ5|GLYM_ARATH Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1

 Score =  601 bits (1549), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 291/492 (59%), Positives = 361/492 (73%), Gaps = 20/492 (4%)

Query: 37  CRCSSIEGSLVTGRPPSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSL 96
           C  SS+    V  +  S V+ P           ++  L E DPE+ +II  EK RQ+K L
Sbjct: 27  CYMSSLPSEAVDEKERSRVTWP---------KQLNAPLEEVDPEIADIIEHEKARQWKGL 77

Query: 97  ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE 156
           ELI SENFTS +VM+AVGS +TNKYSEG PG RYYGGNEYID  ETLCQKRAL AF LD 
Sbjct: 78  ELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDP 137

Query: 157 NKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE 216
            KWGVNVQPLSGSPANF VYTA+LKPH+RIM LDLPHGGHLSHG+ T  +++S  SI+FE
Sbjct: 138 EKWGVNVQPLSGSPANFHVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFE 197

Query: 217 SMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMD 276
           +MPYRLDESTG +DYD +EK+A LFRPKLI+AGASAY R +DY R+R++ +   A+++ D
Sbjct: 198 TMPYRLDESTGYIDYDQMEKSATLFRPKLIVAGASAYARLYDYARIRKVCNKQKAVMLAD 257

Query: 277 MAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKK---------DPVLGVEL 327
           MAHISGLVAA+V+  PF Y DVVTTTTHKSLRGPRG MIFF+K           VL  + 
Sbjct: 258 MAHISGLVAANVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVL-YDF 316

Query: 328 ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYK 387
           E  IN AVFPGLQGGPHNHTI GLAV LK A + E+K YQ +V+SN    A  L+E GY+
Sbjct: 317 EDKINQAVFPGLQGGPHNHTITGLAVALKQATTSEYKAYQEQVLSNSAKFAQTLMERGYE 376

Query: 388 LVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAM 447
           LVSGG+DNHLVLV+L+P GIDG+RVEK+L+   I  NKN+VPGD SA+VPGGIR+G+PA+
Sbjct: 377 LVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPAL 436

Query: 448 TTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGR 507
           T+RGF E++F  +A++  + V I L+ K   QG+KL+DF++ + S + ++ + +A LR  
Sbjct: 437 TSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSS-TIQSEIAKLRHE 495

Query: 508 VEALTTQFPIPG 519
           VE    QFP  G
Sbjct: 496 VEEFAKQFPTIG 507

Interconversion of serine and glycine.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 2EC: .EC: 1

>sp|P50433|GLYM_SOLTU Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1

 Score =  590 bits (1521), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 281/450 (62%), Positives = 344/450 (76%), Gaps = 9/450 (2%)

Query: 78  DPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 137
           DPE+ +II  EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGGNEYI
Sbjct: 60  DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 119

Query: 138 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 197
           D  ETLCQKRAL AF LD  KWGVNVQPLSGSPANF+VYTA+LKPH+RIM LDLPHGGHL
Sbjct: 120 DMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFQVYTALLKPHERIMALDLPHGGHL 179

Query: 198 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 257
           SHG+ T  +++S  SI+FE+MPYRLDESTG +DYD LEK+A LFRPKLI+AGASAY R +
Sbjct: 180 SHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 239

Query: 258 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 317
           DY R+R++ +   A+L+ DMAHISGLVAA V+  PF Y DVVTTTTHKSLRGPRG MIF+
Sbjct: 240 DYDRIRKVCNKQKAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFY 299

Query: 318 KK--------DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 369
           +K           +  + E  IN AVFPGLQGGPHNHTI GLAV LK A +PE++ YQ +
Sbjct: 300 RKGVKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQ 359

Query: 370 VVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVP 429
           V+SN    A  L E GY+LVSGG+DNHLVLV+++  GIDG+RVEK+L+   I  NKN+VP
Sbjct: 360 VLSNSSKFAQALGEKGYELVSGGTDNHLVLVNMKNKGIDGSRVEKVLEAVHIAANKNTVP 419

Query: 430 GDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNF 489
           GD SA+VPGGIR+G+PA+T+RGF E++FV +ADF    V+I ++ K   QG+KL+DF+  
Sbjct: 420 GDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVAT 479

Query: 490 VTSPNFSLMNNVADLRGRVEALTTQFPIPG 519
           + S +  + + +A LR  VE    QFP  G
Sbjct: 480 LES-SAPIKSEIAKLRHDVEEYAKQFPTIG 508

Interconversion of serine and glycine.

Solanum tuberosum (taxid: 4113)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

>sp|P34899|GLYM_PEA Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1

 Score =  589 bits (1519), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 277/450 (61%), Positives = 344/450 (76%), Gaps = 9/450 (2%)

Query: 78  DPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 137
           DPE+ +II  EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGGNEYI
Sbjct: 60  DPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 119

Query: 138 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 197
           D  ETLCQKRAL AF LD  KWGVNVQPLSGSP+NF+VYTA+LKPHDRIM LDLPHGGHL
Sbjct: 120 DMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPSNFQVYTALLKPHDRIMALDLPHGGHL 179

Query: 198 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 257
           SHG+ T  +++S  SI+FE+MPYRLDESTG +DYD LEK+A LFRPKLI+AGASAY R +
Sbjct: 180 SHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 239

Query: 258 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 317
           DY R+R++ D   A+L+ DMAHISGLVAA V+  PF Y DVVTTTTHKSLRGPRG MIFF
Sbjct: 240 DYARIRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFF 299

Query: 318 KK--------DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 369
           +K           +  + E  IN AVFPGLQGGPHNHTI GLAV LK A +PE++ YQ +
Sbjct: 300 RKGLKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQ 359

Query: 370 VVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVP 429
           V+SN    A  L E GY LVSGG++NHLVLV+L+  GIDG+RVEK+L++  I  NKN+VP
Sbjct: 360 VLSNSSKFAKALSEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVP 419

Query: 430 GDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNF 489
           GD SA+VPGGIR+G+PA+T+RGF E++FV +A++    V + L+ K   +G+KL+DF+  
Sbjct: 420 GDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFVEA 479

Query: 490 VTSPNFSLMNNVADLRGRVEALTTQFPIPG 519
           + + ++ + + ++ L+  VE    QFP  G
Sbjct: 480 LQTSSY-VQSEISKLKHDVEEFAKQFPTIG 508

Interconversion of serine and glycine.

Pisum sativum (taxid: 3888)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

>sp|P49358|GLYN_FLAPR Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1

 Score =  583 bits (1503), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 281/451 (62%), Positives = 340/451 (75%), Gaps = 12/451 (2%)

Query: 78  DPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 137
           DPE+ +II  EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGGNEYI
Sbjct: 60  DPEIADIIELEKARQWKGLELILSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 119

Query: 138 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 197
           D  ETLCQKRAL AF LD  KWGVNVQPLSGSPANF VYTA+LK HDRIM LDLPHGGHL
Sbjct: 120 DMAETLCQKRALEAFRLDAAKWGVNVQPLSGSPANFHVYTALLKAHDRIMALDLPHGGHL 179

Query: 198 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 257
           SHG+ T  +++S  SI+FE+MPYRL+ESTG +DYD LEK+A LFRPKLI+AGASAY R +
Sbjct: 180 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 239

Query: 258 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 317
           DY R+R++ D   A+L+ DMAHISGLVAA V+  PF Y DVVTTTTHKSLRGPRG MIFF
Sbjct: 240 DYARIRKVCDKQKAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFF 299

Query: 318 KK---------DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 368
           +K           VL  + E  IN AVFPGLQGGPHNHTI GLAV LK A + E+K YQ 
Sbjct: 300 RKGVKEVNKQGKEVL-YDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTAEYKAYQE 358

Query: 369 KVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSV 428
           +V+SNC   A  LV+ GY+LVSGG++NHLVLV+L+  GIDG+RVEK+L+   I  NKN+V
Sbjct: 359 QVMSNCAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTV 418

Query: 429 PGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMN 488
           PGD SA+VPGGIR+G+PA+T+RGF E++F  +A      V++ ++ K   QG+KL+DF+ 
Sbjct: 419 PGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYLFDLAVKLAVKIKGEAQGTKLKDFVA 478

Query: 489 FVTSPNFSLMNNVADLRGRVEALTTQFPIPG 519
            + S  F   + ++ LR  VE    QFP  G
Sbjct: 479 AMQSSAFQ--SEISKLRHDVEEYAKQFPTIG 507

Interconversion of serine and glycine.

Flaveria pringlei (taxid: 4226)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

>sp|P49357|GLYM_FLAPR Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1

 Score =  576 bits (1485), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 275/450 (61%), Positives = 340/450 (75%), Gaps = 10/450 (2%)

Query: 78  DPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 137
           DPE+ +II  EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGGNEYI
Sbjct: 60  DPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 119

Query: 138 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 197
           D  ETLCQKRAL AF LD  KWGVNVQPLSGSPANF VYTA+LK HDRIM LDLPHGGHL
Sbjct: 120 DMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFHVYTALLKAHDRIMALDLPHGGHL 179

Query: 198 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 257
           SHG+ T  +++S  SI+FE+MPYRL+ESTG +DYD LEK+A LFRPKLI+AGASAY R +
Sbjct: 180 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 239

Query: 258 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 317
           DY R+R++ D   A+++ DMAHISGLVAA V+  PF Y DVVTTTTHKSLRGPRG MIFF
Sbjct: 240 DYARIRKVCDKQKAIMLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFF 299

Query: 318 KK--------DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 369
           +K           +  + E  IN AVFPGLQGGPHNHTI GLAV LK A + E+K YQ +
Sbjct: 300 RKGLKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTAEYKAYQEQ 359

Query: 370 VVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVP 429
           V+SN    A  LV+ GY+LVSGG++NHLVLV+L+  GIDG++VEK+L+   I  NKN+VP
Sbjct: 360 VMSNSAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSKVEKVLEAVHIAANKNTVP 419

Query: 430 GDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNF 489
           GD SA+VPGGIR+G+PA+T+RGF E++F  +A F    V++ ++ K   +G+KL+DF+  
Sbjct: 420 GDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDLAVKLAVKIKGEAKGTKLKDFVTA 479

Query: 490 VTSPNFSLMNNVADLRGRVEALTTQFPIPG 519
           + S   ++ + ++ LR  VE    QFP  G
Sbjct: 480 MESS--AIQSEISKLRHDVEEYAKQFPTIG 507

Interconversion of serine and glycine.

Flaveria pringlei (taxid: 4226)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

>sp|P34897|GLYM_HUMAN Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3

 Score =  572 bits (1474), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 274/456 (60%), Positives = 344/456 (75%), Gaps = 12/456 (2%)

Query: 73  SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 132
           SL ++DPE+ E++ +EK+RQ + LELIASENF SRA +EA+GSCL NKYSEG PGKRYYG
Sbjct: 48  SLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYG 107

Query: 133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 192
           G E +DE+E LCQ+RAL AF+LD  +WGVNVQP SGSPAN  VYTA+L+PHDRIMGLDLP
Sbjct: 108 GAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLP 167

Query: 193 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 252
            GGHL+HG+M+  +R+S TSI+FESMPY+L+  TGL+DY+ L  TA LFRP+LIIAG SA
Sbjct: 168 DGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSA 227

Query: 253 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 312
           Y R  DY RMR++ D V A L+ DMAHISGLVAA V+  PFK+ D+VTTTTHK+LRG R 
Sbjct: 228 YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARS 287

Query: 313 GMIFFKK-----DPVLGVEL----ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 363
           G+IF++K     DP  G E+    E  IN AVFP LQGGPHNH I  +AV LK A +P F
Sbjct: 288 GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMF 347

Query: 364 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITL 423
           + Y  +V+ N RA+A  L+E GY LVSGG+DNHLVLVDLRP G+DGAR E++L++ SIT 
Sbjct: 348 REYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITA 407

Query: 424 NKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKL 483
           NKN+ PGD+SA+ PGG+R+G+PA+T+R F E +F  + DFI EGV I LE K   + +KL
Sbjct: 408 NKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKS--KTAKL 465

Query: 484 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 519
           QDF +F+   +      +A+LR RVE     FP+PG
Sbjct: 466 QDFKSFLLKDS-ETSQRLANLRQRVEQFARAFPMPG 500

Contributes to the de novo mitochondrial thymidylate biosynthesis pathway. Required to prevent uracil accumulation in mtDNA. Interconversion of serine and glycine. Associates with mitochondrial DNA.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

>sp|Q5E9P9|GLYC_BOVIN Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3

 Score =  570 bits (1470), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 277/457 (60%), Positives = 341/457 (74%), Gaps = 11/457 (2%)

Query: 74  LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
           L + D EV  II KE  RQ   LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG
Sbjct: 26  LKDNDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 85

Query: 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 193
            E+IDELE LCQKRAL  + LD   WGVNVQP SGSPANF VYTA+++PH RIMGLDLP 
Sbjct: 86  TEFIDELEVLCQKRALQVYGLDSQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 145

Query: 194 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253
           GGHL+HGFMT K+++S TSI+FESMPY+++  TG ++YD LE+ A LF P+LIIAG S Y
Sbjct: 146 GGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPRLIIAGTSCY 205

Query: 254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313
            R+ DY R+R+IAD  GA LM DMAH+SGLVAA VV  PF++C VV+TTTHK+LRG R G
Sbjct: 206 SRNLDYARLRKIADDNGAYLMADMAHVSGLVAAGVVPSPFEHCHVVSTTTHKTLRGCRAG 265

Query: 314 MIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 364
           MIF++K     DP  G E    LES IN+AVFPGLQGGPHNH I G+AV LK A +PEF+
Sbjct: 266 MIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFR 325

Query: 365 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 424
            YQ +VV+NCRALA  L+ LGY++V+GGSDNHL+LVDLR  G DG R EK+L+  SI  N
Sbjct: 326 AYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 385

Query: 425 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQ-GSKL 483
           KN+ PGDKSAL P G+R+G+PA+T+RG  E++F  +A FIH G+E+TL+ +  V   + L
Sbjct: 386 KNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQDAVGVKATL 445

Query: 484 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
           ++FM  +          VA LR  VE+  T FP+PG+
Sbjct: 446 KEFMEKLAGAE-EHHRAVAALRAEVESFATLFPLPGL 481

Interconversion of serine and glycine.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

>sp|P14519|GLYM_RABIT Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2

 Score =  570 bits (1470), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 276/457 (60%), Positives = 344/457 (75%), Gaps = 14/457 (3%)

Query: 73  SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 132
           SL + DPE+ E++ +EK+RQ + LELIASENF  RA +EA+GSCL NKYSEG PGKRYYG
Sbjct: 48  SLSDTDPEMWELLQREKDRQCRGLELIASENFCIRAALEALGSCLNNKYSEGYPGKRYYG 107

Query: 133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 192
           G E +DE+E LCQ+RAL AF+LD  +WGVNVQP SGSPAN   YTA+L+PHDRIMGLDLP
Sbjct: 108 GAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLP 167

Query: 193 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 252
            GGHL+HG+M+  +RVS TSI+FESMPY+L+  TGL+DY+ L  TA LFRP+LIIAG SA
Sbjct: 168 DGGHLTHGYMSDVKRVSATSIFFESMPYKLNPQTGLIDYEQLALTARLFRPRLIIAGTSA 227

Query: 253 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 312
           Y R  DY RMR++ D V A L+ DMAHISGLVAA V+  PFK+ DVVTTTTHK+LRG R 
Sbjct: 228 YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADVVTTTTHKTLRGARS 287

Query: 313 GMIFFKK-----DPVLGVEL----ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 363
           G+IF++K     DP  G E+    E  IN AVFP LQGGPHNH I  +AV LK A +P F
Sbjct: 288 GLIFYRKGVRTVDPKTGQEIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMF 347

Query: 364 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITL 423
           + Y  +V+ N RA+A  L+E GY LVSGG+DNHLVLVDLRP G+DGAR E++L++ SIT 
Sbjct: 348 REYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITA 407

Query: 424 NKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKL 483
           NKN+ PGD+SA+ PGG+R+G+PA+T+R F E +F  + DFI EGV I LE K+  + +KL
Sbjct: 408 NKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKR--KTAKL 465

Query: 484 QDFMNF-VTSPNFSLMNNVADLRGRVEALTTQFPIPG 519
           QDF +F +  P  S   ++ADLR RV+     FP+PG
Sbjct: 466 QDFKSFLLKDPETS--QHLADLRRRVQQFARAFPMPG 500

Contributes to the de novo mitochondrial thymidylate biosynthesis pathway. Required to prevent uracil accumulation in mtDNA. Interconversion of serine and glycine. Associates with mitochondrial DNA.

Oryctolagus cuniculus (taxid: 9986)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

>sp|Q3SZ20|GLYM_BOVIN Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1

 Score =  570 bits (1469), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 274/457 (59%), Positives = 346/457 (75%), Gaps = 14/457 (3%)

Query: 73  SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 132
           SL ++DPE+ E++ +EK+RQ + LELIASENF SRA +EA+GSCL NKYSEG PGKRYYG
Sbjct: 48  SLSDSDPEMWELLRREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYG 107

Query: 133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 192
           G E +DE+E LCQ+RAL AF+LD  +WGVNVQP SGSPAN   YTA+L+PHDRIMGLDLP
Sbjct: 108 GAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLP 167

Query: 193 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 252
            GGHL+HG+M+  +R+S TSI+FESMPY+L+  TGL+DYD L  TA LF+P+LIIAG SA
Sbjct: 168 DGGHLTHGYMSDVKRISATSIFFESMPYKLNPQTGLIDYDQLALTARLFKPRLIIAGTSA 227

Query: 253 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 312
           Y R  DY RMR++ D V A L+ DMAHISGLVAA V+  PFK+ D+VTTTTHK+LRG R 
Sbjct: 228 YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARS 287

Query: 313 GMIFFKK-----DPVLGVEL----ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 363
           G+IF++K     DP  G E+    E  IN AVFP LQGGPHNH I  +AV LK A +P F
Sbjct: 288 GLIFYRKGVQAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMF 347

Query: 364 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITL 423
           + Y  +++ N +A+A+ L+E GY LVSGG+DNHLVLVDLRP G+DGAR E++L++ SIT 
Sbjct: 348 REYSLQILKNAQAMANALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITA 407

Query: 424 NKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKL 483
           NKN+ PGD+SA+ PGG+R+G+PA+T+RGF E +F  +  FI EGV I LE K   + +KL
Sbjct: 408 NKNTCPGDRSAITPGGLRLGAPALTSRGFLEDDFRKVVGFIDEGVNIGLEVKS--KTTKL 465

Query: 484 QDFMNF-VTSPNFSLMNNVADLRGRVEALTTQFPIPG 519
           QDF +F +  P  S  + +ADLR RVE     FP+PG
Sbjct: 466 QDFKSFLLKDPETS--HQLADLRQRVEQFARAFPMPG 500

Contributes to the de novo mitochondrial thymidylate biosynthesis pathway. Required to prevent uracil accumulation in mtDNA. Interconversion of serine and glycine. Associates with mitochondrial DNA.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

>sp|P35623|GLYC_SHEEP Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3

 Score =  568 bits (1465), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 277/457 (60%), Positives = 340/457 (74%), Gaps = 11/457 (2%)

Query: 74  LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
           L + D EV  II KE  RQ   LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG
Sbjct: 26  LKDNDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 85

Query: 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 193
            E+IDELE LCQKRAL  + LD   WGVNVQP SGSPANF VYTA+++PH RIMGLDLP 
Sbjct: 86  TEFIDELEVLCQKRALQVYGLDPECWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 145

Query: 194 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253
           GGHL+HGFMT K+++S TSI+FESMPY+++  TG ++YD LE+ A LF P+LIIAG S Y
Sbjct: 146 GGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPRLIIAGTSCY 205

Query: 254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313
            R+ DY R+R+IAD  GA LM DMAHISGLVAA VV  PF++C VV+TTTHK+LRG R G
Sbjct: 206 SRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTLRGCRAG 265

Query: 314 MIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 364
           MIF++K     DP  G E    LES IN+AVFPGLQGGPHNH I G+AV LK A +PEF+
Sbjct: 266 MIFYRKGVRSVDPKTGKETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFR 325

Query: 365 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 424
            YQ +VV+NCRALA  L+ LGY++V+GGSDNHL+LVDLR  G DG R EK+L+  SI  N
Sbjct: 326 AYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 385

Query: 425 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQ-GSKL 483
           KN+ PGDKSAL P G+R+G+PA+T+RG  E++F  +A FIH G+E+TL+ +  V   + L
Sbjct: 386 KNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFRKVAHFIHRGIELTLQIQDAVGVKATL 445

Query: 484 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
           ++FM  +          V  LR  VE+  T FP+PG+
Sbjct: 446 KEFMEKLAGAE-EHQRAVTALRAEVESFATLFPLPGL 481

Interconversion of serine and glycine.

Ovis aries (taxid: 9940)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	520
224092216	529	serine hydroxymethyltransferase 8 [Popul	1.0	0.982	0.876	0.0
134142079	529	plastid serine hydroxymethyltransferase	1.0	0.982	0.873	0.0
255557552	527	serine hydroxymethyltransferase, putativ	0.996	0.982	0.861	0.0
225429452	528	PREDICTED: serine hydroxymethyltransfera	0.998	0.982	0.855	0.0
449460014	528	PREDICTED: serine hydroxymethyltransfera	0.998	0.982	0.840	0.0
351724373	536	serine hydroxymethyltransferase 4 [Glyci	0.998	0.968	0.798	0.0
18418028	529	serine hydroxymethyltransferase 3 [Arabi	1.0	0.982	0.805	0.0
14030719	529	AT4g32520/F8B4_220 [Arabidopsis thaliana	1.0	0.982	0.805	0.0
297798710	530	hypothetical protein ARALYDRAFT_491471 [	1.0	0.981	0.800	0.0
356555484	536	PREDICTED: LOW QUALITY PROTEIN: serine h	0.998	0.968	0.785	0.0

>gi|224092216|ref|XP_002309513.1| serine hydroxymethyltransferase 8 [Populus trichocarpa] gi|222855489|gb|EEE93036.1| serine hydroxymethyltransferase 8 [Populus trichocarpa]

 Score =  954 bits (2465), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/520 (87%), Positives = 486/520 (93%)

Query: 1   MGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRPPSSVSVPIP 60
           MGSLQQP+  KGP  P + SV++GFP Q++LN VKPCR SS+EGSLVTGRPPSSVSVPIP
Sbjct: 10  MGSLQQPVLSKGPAFPMKRSVIIGFPYQVKLNSVKPCRASSLEGSLVTGRPPSSVSVPIP 69

Query: 61  EIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNK 120
           E G D SSF DY LGEADPEV EII KEK+RQFKSLELIASENFTSRAVMEAVGSCLTNK
Sbjct: 70  ETGADISSFKDYGLGEADPEVLEIINKEKDRQFKSLELIASENFTSRAVMEAVGSCLTNK 129

Query: 121 YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL 180
           YSEGLPGKRYYGGNEYIDELETLCQKRALA+FNLD  KWGVNVQPLSGSPANFEVYTA+L
Sbjct: 130 YSEGLPGKRYYGGNEYIDELETLCQKRALASFNLDGKKWGVNVQPLSGSPANFEVYTALL 189

Query: 181 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL 240
           KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL
Sbjct: 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL 249

Query: 241 FRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVT 300
           FRPKLIIAGASAYPRDFDYPRMR+IADAVGA LMMDMAHISGLVAASVVADPF+YCDVVT
Sbjct: 250 FRPKLIIAGASAYPRDFDYPRMRKIADAVGAFLMMDMAHISGLVAASVVADPFEYCDVVT 309

Query: 301 TTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS 360
           TTTHKSLRGPRGGMIFFKKDPVLGV++ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS
Sbjct: 310 TTTHKSLRGPRGGMIFFKKDPVLGVDMESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS 369

Query: 361 PEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAS 420
           PEFK YQ +V+ N RALA+R+VELGYKLVSGGSDNHL+LVDLRP+G+DGARVEKILDMAS
Sbjct: 370 PEFKAYQKQVICNSRALANRMVELGYKLVSGGSDNHLILVDLRPLGLDGARVEKILDMAS 429

Query: 421 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQG 480
           ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGF+E EFVA AD IHEGV+I+LEAKK V G
Sbjct: 430 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTETEFVATADLIHEGVQISLEAKKSVSG 489

Query: 481 SKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
           SKLQDF+ FV SP+F L + V+DL+ RVEALTTQFPIPG+
Sbjct: 490 SKLQDFLKFVKSPDFPLTDKVSDLQRRVEALTTQFPIPGL 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|134142079|gb|ABO61383.1| plastid serine hydroxymethyltransferase [Populus tremuloides]

 Score =  949 bits (2454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/520 (87%), Positives = 485/520 (93%)

Query: 1   MGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRPPSSVSVPIP 60
           MGSLQQP+  KGP  P + SV++GFP Q++LN VKPCR SS+EGSLVTGRPPSSVSVPIP
Sbjct: 10  MGSLQQPVLSKGPAFPMKRSVIIGFPYQVKLNSVKPCRASSLEGSLVTGRPPSSVSVPIP 69

Query: 61  EIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNK 120
           E G D SSF DY L EADPEV EII KEK+RQFKSLELIASENFTSRAVMEAVGSCLTNK
Sbjct: 70  ETGADISSFKDYGLSEADPEVLEIIKKEKDRQFKSLELIASENFTSRAVMEAVGSCLTNK 129

Query: 121 YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL 180
           YSEGLPGKRYYGGNEYIDELETLCQKRALA+FNLD  KWGVNVQPLSGSPANFEVYTA+L
Sbjct: 130 YSEGLPGKRYYGGNEYIDELETLCQKRALASFNLDGKKWGVNVQPLSGSPANFEVYTALL 189

Query: 181 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL 240
           KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL
Sbjct: 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL 249

Query: 241 FRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVT 300
           FRPKLIIAGASAYPRDFDYPRMR+IADAVGA LMMDMAHISGLV ASVVADPF+YCDVVT
Sbjct: 250 FRPKLIIAGASAYPRDFDYPRMRKIADAVGAFLMMDMAHISGLVPASVVADPFEYCDVVT 309

Query: 301 TTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS 360
           TTTHKSLRGPRGGMIFFKKDPVLGV++ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS
Sbjct: 310 TTTHKSLRGPRGGMIFFKKDPVLGVDMESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS 369

Query: 361 PEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAS 420
           PEFK YQ +V+ N RALA+R+VELGYKLVSGGSDNHL+LVDLRP+G+DGARVEKILD+AS
Sbjct: 370 PEFKAYQKQVICNSRALANRMVELGYKLVSGGSDNHLILVDLRPLGLDGARVEKILDIAS 429

Query: 421 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQG 480
           ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGF+E+EFVA AD IHEGV+I+LEAKK V G
Sbjct: 430 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEREFVATADLIHEGVQISLEAKKSVSG 489

Query: 481 SKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
           SKLQDF+ FV SP+F L + V+DLR RVEALTTQFPIPG+
Sbjct: 490 SKLQDFLKFVKSPDFPLTDKVSDLRRRVEALTTQFPIPGL 529

Source: Populus tremuloides

Species: Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557552|ref|XP_002519806.1| serine hydroxymethyltransferase, putative [Ricinus communis] gi|223541045|gb|EEF42602.1| serine hydroxymethyltransferase, putative [Ricinus communis]

 Score =  928 bits (2399), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/520 (86%), Positives = 476/520 (91%), Gaps = 2/520 (0%)

Query: 1   MGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRPPSSVSVPIP 60
           MGSLQQP+W+KG  LP + S  VGFP+QI+LN  +PCR  +I+GSLV GRPPSSVSVP  
Sbjct: 10  MGSLQQPVWIKGSSLPLKQSNFVGFPHQIKLNSFRPCRYLNIQGSLVAGRPPSSVSVP-- 67

Query: 61  EIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNK 120
           EI GD SSF DY L EADPEV EII KEK RQFKSLELIASENFTSRAVMEAVGSCLTNK
Sbjct: 68  EIEGDRSSFKDYGLSEADPEVREIIEKEKNRQFKSLELIASENFTSRAVMEAVGSCLTNK 127

Query: 121 YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL 180
           YSEGLPGKRYYGGNE+IDELETLCQ+RALAAF LD  KWGVNVQPLSGSPANFEVYTA+L
Sbjct: 128 YSEGLPGKRYYGGNEHIDELETLCQERALAAFGLDRKKWGVNVQPLSGSPANFEVYTALL 187

Query: 181 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL 240
            PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTA L
Sbjct: 188 NPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTANL 247

Query: 241 FRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVT 300
           FRPKLIIAGASAYPRDFDYPRMR+IADAVGA LMMDMAHISGLVAASVV DPF+YCD+VT
Sbjct: 248 FRPKLIIAGASAYPRDFDYPRMRKIADAVGAFLMMDMAHISGLVAASVVGDPFEYCDIVT 307

Query: 301 TTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS 360
           TTTHKSLRGPRGGMIFF+KD +LGV+LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS
Sbjct: 308 TTTHKSLRGPRGGMIFFRKDTILGVDLESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS 367

Query: 361 PEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAS 420
           PEFK YQ +V+SNCRALA RLVELGYKLVSGGSDNHLVLVDLRP+GIDGARVEKILDMAS
Sbjct: 368 PEFKAYQKQVISNCRALAYRLVELGYKLVSGGSDNHLVLVDLRPLGIDGARVEKILDMAS 427

Query: 421 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQG 480
           ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGF+E+EF+A ADFIHEGV+IT EAKK V G
Sbjct: 428 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEREFIATADFIHEGVQITTEAKKSVSG 487

Query: 481 SKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
           SKLQDFM  V SP+FSL + V+DL+ RVEAL TQF IPGV
Sbjct: 488 SKLQDFMKLVASPDFSLASEVSDLQTRVEALATQFSIPGV 527

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429452|ref|XP_002277146.1| PREDICTED: serine hydroxymethyltransferase, mitochondrial [Vitis vinifera] gi|296081614|emb|CBI20619.3| unnamed protein product [Vitis vinifera]

 Score =  928 bits (2398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/520 (85%), Positives = 479/520 (92%), Gaps = 1/520 (0%)

Query: 1   MGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRPPSSVSVPIP 60
           MGSLQQPIW+KG      GS + GFP+QI+LN VKPCR S I+GSLVTG+PPSSVSV +P
Sbjct: 10  MGSLQQPIWIKGSSFAPNGSTVNGFPHQIKLNSVKPCR-SYIKGSLVTGKPPSSVSVTVP 68

Query: 61  EIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNK 120
             G  G +F+D+ L EADPEVC II KEK+RQ KSLELIASENFTSRAVMEAVGSCLTNK
Sbjct: 69  GNGDSGVNFIDHGLNEADPEVCAIIYKEKQRQMKSLELIASENFTSRAVMEAVGSCLTNK 128

Query: 121 YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL 180
           YSEGLPGKRYYGGNE+IDELETLCQKRALAAF+LD  KWGVNVQPLSGSPANFEVYTA+L
Sbjct: 129 YSEGLPGKRYYGGNEFIDELETLCQKRALAAFHLDGKKWGVNVQPLSGSPANFEVYTALL 188

Query: 181 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL 240
            PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTA L
Sbjct: 189 NPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTANL 248

Query: 241 FRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVT 300
           FRPKLIIAGASAYPRDFDYPRMR+IAD VGA LMMDMAHISGLVAASVVADPF+YCD+VT
Sbjct: 249 FRPKLIIAGASAYPRDFDYPRMRKIADGVGAFLMMDMAHISGLVAASVVADPFEYCDIVT 308

Query: 301 TTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS 360
           TTTHKSLRGPRGGMIFFKKD VLGV+LESAINNAVFPGLQGGPHNHTIGGL+VCLKHAQS
Sbjct: 309 TTTHKSLRGPRGGMIFFKKDSVLGVDLESAINNAVFPGLQGGPHNHTIGGLSVCLKHAQS 368

Query: 361 PEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAS 420
           PEFK YQN+VVSNCRALA RL+ELGY LVSGGSDNHL+LVDLRP+GIDGAR EKILDMAS
Sbjct: 369 PEFKAYQNQVVSNCRALAGRLIELGYNLVSGGSDNHLILVDLRPLGIDGARAEKILDMAS 428

Query: 421 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQG 480
           ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEF+A ADFIHEGV+++LEAKK V G
Sbjct: 429 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFIATADFIHEGVQLSLEAKKSVSG 488

Query: 481 SKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
           SKL DFM FVTSP+FSL++ V+DL+ RVE LTTQFP+PG+
Sbjct: 489 SKLLDFMKFVTSPDFSLIDRVSDLQRRVETLTTQFPMPGL 528

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460014|ref|XP_004147741.1| PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Cucumis sativus] gi|449519543|ref|XP_004166794.1| PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Cucumis sativus]

 Score =  914 bits (2361), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/520 (84%), Positives = 480/520 (92%), Gaps = 1/520 (0%)

Query: 1   MGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRPPSSVSVPIP 60
           MGSLQ  +  KG   PS+ S +  FP Q ++N++KPC+   +E S+V G+P SSVSV +P
Sbjct: 10  MGSLQVAVCGKGSCFPSKSSSICVFPQQKKMNILKPCKSFKVEASMVAGKPSSSVSVTVP 69

Query: 61  EIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNK 120
           EIGG  S+FVD++L E DPEV  II KEK+RQFKSLELIASENFTSRAVMEAVGSCLTNK
Sbjct: 70  EIGGV-SNFVDHALSETDPEVRSIIDKEKQRQFKSLELIASENFTSRAVMEAVGSCLTNK 128

Query: 121 YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL 180
           YSEGLPGKRYYGGNE+IDELETLCQ+RALAAF+LD NKWGVNVQPLSGSPANFEVYTA+L
Sbjct: 129 YSEGLPGKRYYGGNEHIDELETLCQQRALAAFHLDNNKWGVNVQPLSGSPANFEVYTAVL 188

Query: 181 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL 240
            PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE+TG+VDYDMLEKTA L
Sbjct: 189 NPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETTGIVDYDMLEKTANL 248

Query: 241 FRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVT 300
           FRPKLIIAGASAYPRDFDYPRMR+IADAVGA LMMDMAHISGLVAASVVADPF+YCD+VT
Sbjct: 249 FRPKLIIAGASAYPRDFDYPRMRKIADAVGAFLMMDMAHISGLVAASVVADPFEYCDIVT 308

Query: 301 TTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS 360
           TTTHKSLRGPRGGMIFF+KDPVLGV+LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS
Sbjct: 309 TTTHKSLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS 368

Query: 361 PEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAS 420
           PEFKVYQNKV++NCRALA+RLVELGYKLVSGGSDNHLVLVDLRP+GIDGARVEKILDMAS
Sbjct: 369 PEFKVYQNKVIANCRALANRLVELGYKLVSGGSDNHLVLVDLRPLGIDGARVEKILDMAS 428

Query: 421 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQG 480
           ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGF+EKEFVA+ADFIHEGV+ITL+AK L  G
Sbjct: 429 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFVAVADFIHEGVKITLDAKPLAPG 488

Query: 481 SKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
           SKLQ+F+ FVT+ +F L + ++DLR RVEALTTQFPIPG+
Sbjct: 489 SKLQEFLKFVTTSDFPLTDRISDLRSRVEALTTQFPIPGL 528

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724373|ref|NP_001238335.1| serine hydroxymethyltransferase 4 [Glycine max] gi|222142535|gb|ACM45954.1| serine hydroxymethyltransferase 4 [Glycine max]

 Score =  866 bits (2238), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/531 (79%), Positives = 464/531 (87%), Gaps = 12/531 (2%)

Query: 1   MGSLQQ-PIWVKGPRLPSEG-SVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRPPSSVSVP 58
           M SLQQ PIW KG   P++G     GF  Q+R   +KP + S +E SLVTG+P SSV   
Sbjct: 7   MSSLQQQPIWTKGLNFPAKGYGSNNGFLPQVRFCNIKPSKASHVEASLVTGKP-SSVPFS 65

Query: 59  IPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLT 118
           +PEIGGDGSSF+DY L EADP+V  II KEK+RQFKSLELIASENFTSRAVMEAVGSCLT
Sbjct: 66  VPEIGGDGSSFLDYGLSEADPDVRAIIDKEKDRQFKSLELIASENFTSRAVMEAVGSCLT 125

Query: 119 NKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA 178
           NKYSEGLPGKRYYGGNEYIDELE LCQ+RALAAF++DENKWGVNVQ LSGSPANF VYTA
Sbjct: 126 NKYSEGLPGKRYYGGNEYIDELEILCQQRALAAFHVDENKWGVNVQTLSGSPANFAVYTA 185

Query: 179 ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTA 238
           +LKPHDRIMGLDLPHGGHLSHGFMTPK+RVS TSIYFESMPYRLDESTGL+DYDMLEKTA
Sbjct: 186 VLKPHDRIMGLDLPHGGHLSHGFMTPKKRVSATSIYFESMPYRLDESTGLIDYDMLEKTA 245

Query: 239 ILFRPKLIIAGASAYPRDFDYPRMRQ---------IADAVGALLMMDMAHISGLVAASVV 289
            LFRPKLI+AGASAYPRD DYPRMR+         IAD VGA LMMDMAHISGLVAASV+
Sbjct: 246 TLFRPKLIVAGASAYPRDIDYPRMRKLITSYMHGKIADEVGAFLMMDMAHISGLVAASVL 305

Query: 290 ADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIG 349
           ++PF+YCD+VTTTTHKSLRGPRGGMIFFKKD V GV+LE AINNAVFPGLQGGPHNHTIG
Sbjct: 306 SNPFEYCDIVTTTTHKSLRGPRGGMIFFKKDTVHGVDLEPAINNAVFPGLQGGPHNHTIG 365

Query: 350 GLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDG 409
           GLAVCLK+AQSPEFK YQN+VV+NCRALA RL+E GYKLVSGGSDNHLVLVDLRP G+DG
Sbjct: 366 GLAVCLKYAQSPEFKNYQNQVVANCRALAKRLIEHGYKLVSGGSDNHLVLVDLRPSGLDG 425

Query: 410 ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469
           ARVEKILD+ASITLNKNSVPGDKSALVPGGIRIG+PAMTTRG  EKEF  IADFIHEGV+
Sbjct: 426 ARVEKILDLASITLNKNSVPGDKSALVPGGIRIGAPAMTTRGLGEKEFSLIADFIHEGVQ 485

Query: 470 ITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
           I+LEAK LV G+KLQDF+ FVTS  F L   V++LR +VEALTTQ+PIPGV
Sbjct: 486 ISLEAKSLVSGTKLQDFLKFVTSSEFPLGEKVSELRRKVEALTTQYPIPGV 536

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18418028|ref|NP_567895.1| serine hydroxymethyltransferase 3 [Arabidopsis thaliana] gi|186515561|ref|NP_001119098.1| serine hydroxymethyltransferase 3 [Arabidopsis thaliana] gi|332660671|gb|AEE86071.1| serine hydroxymethyltransferase 3 [Arabidopsis thaliana] gi|332660672|gb|AEE86072.1| serine hydroxymethyltransferase 3 [Arabidopsis thaliana]

 Score =  859 bits (2219), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/520 (80%), Positives = 451/520 (86%)

Query: 1   MGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRPPSSVSVPIP 60
           M SLQQP  V+G   P     +  F  Q++ N+ KP R S ++ +LV+    SSVS+P  
Sbjct: 10  MASLQQPGRVQGSVFPPIMPPVTKFSQQLKFNISKPFRSSFLKRNLVSEMRASSVSLPNV 69

Query: 61  EIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNK 120
           EI      F DY LGE DPEV  IITKEK+RQF+SLELIASENFTSRAVMEAVGSCLTNK
Sbjct: 70  EISSKEIPFEDYGLGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVMEAVGSCLTNK 129

Query: 121 YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL 180
           YSEGLPGKRYYGGNEYID+LETLCQ RALAAF LD  KWGVNVQPLSGSPANF VYTAIL
Sbjct: 130 YSEGLPGKRYYGGNEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPANFAVYTAIL 189

Query: 181 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL 240
            PHDRIMGLDLPHGGHLSHGFMT KRRVSGTSIYFESMPYRLDESTG+VDYDMLEKTA L
Sbjct: 190 SPHDRIMGLDLPHGGHLSHGFMTAKRRVSGTSIYFESMPYRLDESTGIVDYDMLEKTATL 249

Query: 241 FRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVT 300
           FRPKLIIAGASAY RDFDYPRMR+IAD+VGA LMMDMAHISGLVAASVVADPF+YCD+VT
Sbjct: 250 FRPKLIIAGASAYSRDFDYPRMRKIADSVGAFLMMDMAHISGLVAASVVADPFEYCDIVT 309

Query: 301 TTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS 360
           TTTHKSLRGPRGGMIFF+KDP+ GV+LESA+NNAVFPGLQGGPHNHTIGGLAVCLKHAQS
Sbjct: 310 TTTHKSLRGPRGGMIFFRKDPINGVDLESAVNNAVFPGLQGGPHNHTIGGLAVCLKHAQS 369

Query: 361 PEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAS 420
           PEFK YQ +VVSNCRALA+RLVELG+KLVSGGSDNHLVLVDLRPMG+DGARVEKILDMAS
Sbjct: 370 PEFKAYQKRVVSNCRALANRLVELGFKLVSGGSDNHLVLVDLRPMGMDGARVEKILDMAS 429

Query: 421 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQG 480
           ITLNKNSVPGDKSALVPGGIRIGSPAMTTRG SEK+FV +ADFI EGVEIT+EAKK   G
Sbjct: 430 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGLSEKDFVVVADFIKEGVEITMEAKKAAPG 489

Query: 481 SKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
           SKLQDF  FVTSP F L   V  L+ RVE  T++FPIPGV
Sbjct: 490 SKLQDFNKFVTSPEFPLKERVKSLKERVETFTSRFPIPGV 529

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14030719|gb|AAK53034.1|AF375450_1 AT4g32520/F8B4_220 [Arabidopsis thaliana] gi|23308475|gb|AAN18207.1| At4g32520/F8B4_220 [Arabidopsis thaliana]

 Score =  858 bits (2216), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/520 (80%), Positives = 450/520 (86%)

Query: 1   MGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRPPSSVSVPIP 60
           M SLQQP  V+G   P     +  F  Q++ N+ KP R S ++ +LV+    SSVS+P  
Sbjct: 10  MASLQQPGRVQGSVFPPIMPPVTKFSQQLKFNISKPFRSSFLKRNLVSEMRASSVSLPNV 69

Query: 61  EIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNK 120
           EI      F DY LGE DPEV  IITKEK+RQF+SLELIASENFTSRAVMEAVGSCLTNK
Sbjct: 70  EISSKEIPFEDYGLGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVMEAVGSCLTNK 129

Query: 121 YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL 180
           YSEGLPGKRYYGGNEYID+LETLCQ RALAAF LD  KWGVNVQPLSGSPANF VYTAIL
Sbjct: 130 YSEGLPGKRYYGGNEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPANFAVYTAIL 189

Query: 181 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL 240
            PHDRIMGLDLPHGGHLSHGFMT KRRVSGTSIYFESMPYRLDESTG+VDYDMLEKTA L
Sbjct: 190 SPHDRIMGLDLPHGGHLSHGFMTAKRRVSGTSIYFESMPYRLDESTGIVDYDMLEKTATL 249

Query: 241 FRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVT 300
           FRPKLIIAGASAY RDFDYPRMR+IAD+VGA LMMDMAHISGLVAASVVADPF+YCD+VT
Sbjct: 250 FRPKLIIAGASAYSRDFDYPRMRKIADSVGAFLMMDMAHISGLVAASVVADPFEYCDIVT 309

Query: 301 TTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS 360
           TTTHKSLRGPRGGMIFF+KDP+ GV+LESA+NNAVFPGLQGGPHNHTIGGLAVCLKHAQS
Sbjct: 310 TTTHKSLRGPRGGMIFFRKDPINGVDLESAVNNAVFPGLQGGPHNHTIGGLAVCLKHAQS 369

Query: 361 PEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAS 420
           PEFK YQ +VVSNCRALA+RLVELG+KLVSGGSDNHLVLVDLRPMG+DGARVEKILDMAS
Sbjct: 370 PEFKAYQKRVVSNCRALANRLVELGFKLVSGGSDNHLVLVDLRPMGMDGARVEKILDMAS 429

Query: 421 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQG 480
           ITLNKNSVPGDKSALVPGGIRIGSPAMTTRG SEK+FV +ADFI EGVEIT+EAKK   G
Sbjct: 430 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGLSEKDFVVVADFIKEGVEITMEAKKAAPG 489

Query: 481 SKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
           SKLQDF  FVTSP F L   V  L  RVE  T++FPIPGV
Sbjct: 490 SKLQDFNKFVTSPEFPLKERVKSLTERVETFTSRFPIPGV 529

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798710|ref|XP_002867239.1| hypothetical protein ARALYDRAFT_491471 [Arabidopsis lyrata subsp. lyrata] gi|297313075|gb|EFH43498.1| hypothetical protein ARALYDRAFT_491471 [Arabidopsis lyrata subsp. lyrata]

 Score =  855 bits (2210), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/521 (80%), Positives = 452/521 (86%), Gaps = 1/521 (0%)

Query: 1   MGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRPPSSVSVPIP 60
           M SLQQP  V+G   P     +  F  Q++ N  KP R S +E +LV  R  SSVS+P  
Sbjct: 10  MASLQQPGRVQGSVFPPLMPPVTKFSQQLKFNFSKPFRSSFLERNLVFERRASSVSLPNV 69

Query: 61  EIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNK 120
           E+     +F DY LGE DPEV  IITKEK+RQF+SLELIASENFTSRAVMEAVGSCLTNK
Sbjct: 70  EMSSKDIAFADYGLGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVMEAVGSCLTNK 129

Query: 121 YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL 180
           YSEGLPGKRYYGGNEYID+LETLCQ RALAAF LD  KWGVNVQPLSGSPANF VYTAIL
Sbjct: 130 YSEGLPGKRYYGGNEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPANFAVYTAIL 189

Query: 181 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL 240
            PHDRIMGLDLPHGGHLSHGFMT KRRVSGTSIYFESMPYRLDESTG+VDYDMLEKTA L
Sbjct: 190 SPHDRIMGLDLPHGGHLSHGFMTAKRRVSGTSIYFESMPYRLDESTGIVDYDMLEKTATL 249

Query: 241 FRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVT 300
           FRPKLIIAGASAY RDFDYPR+R+IAD++GA LMMDMAHISGLVAASVVADPF+YCD+VT
Sbjct: 250 FRPKLIIAGASAYSRDFDYPRLRKIADSIGAFLMMDMAHISGLVAASVVADPFEYCDIVT 309

Query: 301 TTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS 360
           TTTHKSLRGPRGGMIFF+KDP+ GV+LESA+NNAVFPGLQGGPHNHTIGGLAVCLKHAQS
Sbjct: 310 TTTHKSLRGPRGGMIFFRKDPINGVDLESAVNNAVFPGLQGGPHNHTIGGLAVCLKHAQS 369

Query: 361 PEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM-GIDGARVEKILDMA 419
            EFK YQ +VVSNCRALA+RLVELG+KLVSGGSDNHLVLVDLRPM  +DGARVEKILDMA
Sbjct: 370 LEFKAYQKRVVSNCRALANRLVELGFKLVSGGSDNHLVLVDLRPMVSMDGARVEKILDMA 429

Query: 420 SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQ 479
           SITLNKNSVPGDKSALVPGGIRIGSPAMTTRG SEK+FVA+ADFI EGVEIT+EAKK   
Sbjct: 430 SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGLSEKDFVAVADFIKEGVEITMEAKKATP 489

Query: 480 GSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
           GSKLQDF  FVTSP+F L+  V  L+ RVE+ T+ FPIPGV
Sbjct: 490 GSKLQDFTKFVTSPDFPLIEKVKSLKERVESFTSHFPIPGV 530

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555484|ref|XP_003546061.1| PREDICTED: LOW QUALITY PROTEIN: serine hydroxymethyltransferase, mitochondrial-like [Glycine max]

 Score =  852 bits (2201), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/531 (78%), Positives = 459/531 (86%), Gaps = 12/531 (2%)

Query: 1   MGSLQQ-PIWVKGPRLPSEG-SVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRPPSSVSVP 58
           M SLQQ PIW KG   P++G     GF  Q+R   +KP + S +E SLV G+P SSVS  
Sbjct: 7   MSSLQQQPIWTKGLNFPAKGYGSNNGFVTQLRFCNIKPSKASHVEASLVAGKP-SSVSFS 65

Query: 59  IPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLT 118
           +PEIGGDGSSF+DY L EADPEV  II KEK+RQFKSLELIASENFTSRAVMEAVGSCLT
Sbjct: 66  VPEIGGDGSSFLDYGLSEADPEVRAIIDKEKDRQFKSLELIASENFTSRAVMEAVGSCLT 125

Query: 119 NKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA 178
           NKYSEGLPG+RYYGGNEYIDELETLCQ+RALAAF++D NKWGVNVQ LSGSPANF V+TA
Sbjct: 126 NKYSEGLPGRRYYGGNEYIDELETLCQQRALAAFHVDGNKWGVNVQTLSGSPANFAVFTA 185

Query: 179 ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTA 238
           +LKPHDRIMGLDLPHGGHLSHGFMTPK+RVS TSIYFE MPY LDESTGL+DYDMLEKTA
Sbjct: 186 VLKPHDRIMGLDLPHGGHLSHGFMTPKKRVSATSIYFEPMPYXLDESTGLIDYDMLEKTA 245

Query: 239 ILFRPKLIIAGASAYPRDFDYPRMRQ---------IADAVGALLMMDMAHISGLVAASVV 289
            LFRPKLIIAGASAYP D DYPRMR+         IAD VGA LMMDMAHISGLVAASV+
Sbjct: 246 TLFRPKLIIAGASAYPXDIDYPRMRKLITSYTHGKIADEVGAFLMMDMAHISGLVAASVL 305

Query: 290 ADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIG 349
           A+PF+YCD+VTTTTHKSLRGPRGGMIFFKKD V GV+LE AINNAVFPGLQGGPHNHTIG
Sbjct: 306 ANPFEYCDIVTTTTHKSLRGPRGGMIFFKKDTVHGVDLEPAINNAVFPGLQGGPHNHTIG 365

Query: 350 GLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDG 409
           GLAVCLK+AQSPEFK YQN+VV+NC+ALA +L+E GYKLVSGGSDNHLVLVDLRP G+DG
Sbjct: 366 GLAVCLKYAQSPEFKNYQNQVVANCKALAQQLIEHGYKLVSGGSDNHLVLVDLRPSGLDG 425

Query: 410 ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469
           ARVEKILDMASITLNKNSVP DKSALVPGGIRIG+PAMTTRG  EKEF  IADF+HEGV+
Sbjct: 426 ARVEKILDMASITLNKNSVPDDKSALVPGGIRIGTPAMTTRGLGEKEFSLIADFLHEGVQ 485

Query: 470 ITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
           I LEAK LV G+KLQDF+ FV+S  F L   +++LR +VEALTTQ+PIPGV
Sbjct: 486 ICLEAKSLVSGTKLQDFLKFVSSSEFPLGEKISELRRKVEALTTQYPIPGV 536

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	520
TAIR|locus:2127806	529	SHM3 "serine hydroxymethyltran	1.0	0.982	0.796	6.2e-220
TAIR|locus:2005518	517	SHM1 "serine transhydroxymethy	0.855	0.860	0.625	6e-151
RGD|1312011	681	Shmt1 "serine hydroxymethyltra	0.857	0.654	0.614	1.2e-147
UNIPROTKB|P34896	483	SHMT1 "Serine hydroxymethyltra	0.855	0.921	0.610	3.5e-146
UNIPROTKB|Q5E9P9	484	SHMT1 "Serine hydroxymethyltra	0.855	0.919	0.609	9.3e-146
UNIPROTKB|Q3SZ20	504	SHMT2 "Serine hydroxymethyltra	0.915	0.944	0.569	1.2e-145
UNIPROTKB|E2RIV3	484	SHMT1 "Uncharacterized protein	0.857	0.921	0.601	1.5e-145
UNIPROTKB|E1BS67	486	SHMT1 "Uncharacterized protein	0.880	0.942	0.585	1.9e-145
UNIPROTKB|P34897	504	SHMT2 "Serine hydroxymethyltra	0.853	0.880	0.600	1.9e-145
UNIPROTKB|F1SL74	504	LOC100626911 "Serine hydroxyme	0.853	0.880	0.605	1.9e-145

TAIR|locus:2127806 SHM3 "serine hydroxymethyltransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 2124 (752.7 bits), Expect = 6.2e-220, P = 6.2e-220
 Identities = 414/520 (79%), Positives = 445/520 (85%)

Query:     1 MGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRXXXXXXXXIP 60
             M SLQQP  V+G   P     +  F  Q++ N+ KP R S ++ +LV+            
Sbjct:    10 MASLQQPGRVQGSVFPPIMPPVTKFSQQLKFNISKPFRSSFLKRNLVSEMRASSVSLPNV 69

Query:    61 EIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNK 120
             EI      F DY LGE DPEV  IITKEK+RQF+SLELIASENFTSRAVMEAVGSCLTNK
Sbjct:    70 EISSKEIPFEDYGLGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVMEAVGSCLTNK 129

Query:   121 YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL 180
             YSEGLPGKRYYGGNEYID+LETLCQ RALAAF LD  KWGVNVQPLSGSPANF VYTAIL
Sbjct:   130 YSEGLPGKRYYGGNEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPANFAVYTAIL 189

Query:   181 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL 240
              PHDRIMGLDLPHGGHLSHGFMT KRRVSGTSIYFESMPYRLDESTG+VDYDMLEKTA L
Sbjct:   190 SPHDRIMGLDLPHGGHLSHGFMTAKRRVSGTSIYFESMPYRLDESTGIVDYDMLEKTATL 249

Query:   241 FRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVT 300
             FRPKLIIAGASAY RDFDYPRMR+IAD+VGA LMMDMAHISGLVAASVVADPF+YCD+VT
Sbjct:   250 FRPKLIIAGASAYSRDFDYPRMRKIADSVGAFLMMDMAHISGLVAASVVADPFEYCDIVT 309

Query:   301 TTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS 360
             TTTHKSLRGPRGGMIFF+KDP+ GV+LESA+NNAVFPGLQGGPHNHTIGGLAVCLKHAQS
Sbjct:   310 TTTHKSLRGPRGGMIFFRKDPINGVDLESAVNNAVFPGLQGGPHNHTIGGLAVCLKHAQS 369

Query:   361 PEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAS 420
             PEFK YQ +VVSNCRALA+RLVELG+KLVSGGSDNHLVLVDLRPMG+DGARVEKILDMAS
Sbjct:   370 PEFKAYQKRVVSNCRALANRLVELGFKLVSGGSDNHLVLVDLRPMGMDGARVEKILDMAS 429

Query:   421 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQG 480
             ITLNKNSVPGDKSALVPGGIRIGSPAMTTRG SEK+FV +ADFI EGVEIT+EAKK   G
Sbjct:   430 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGLSEKDFVVVADFIKEGVEITMEAKKAAPG 489

Query:   481 SKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
             SKLQDF  FVTSP F L   V  L+ RVE  T++FPIPGV
Sbjct:   490 SKLQDFNKFVTSPEFPLKERVKSLKERVETFTSRFPIPGV 529

GO:0003824 "catalytic activity" evidence=IEA

GO:0004372 "glycine hydroxymethyltransferase activity" evidence=IEA;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006544 "glycine metabolic process" evidence=IEA;ISS

GO:0006563 "L-serine metabolic process" evidence=IEA;ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006164 "purine nucleotide biosynthetic process" evidence=RCA

TAIR|locus:2005518 SHM1 "serine transhydroxymethyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1473 (523.6 bits), Expect = 6.0e-151, P = 6.0e-151
 Identities = 284/454 (62%), Positives = 349/454 (76%)

Query:    74 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
             L E DPE+ +II  EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGG
Sbjct:    55 LEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGG 114

Query:   134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 193
             NEYID  ETLCQKRAL AF LD  KWGVNVQPLSGSPANF VYTA+LKPH+RIM LDLPH
Sbjct:   115 NEYIDMAETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFHVYTALLKPHERIMALDLPH 174

Query:   194 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253
             GGHLSHG+ T  +++S  SI+FE+MPYRLDESTG +DYD +EK+A LFRPKLI+AGASAY
Sbjct:   175 GGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQMEKSATLFRPKLIVAGASAY 234

Query:   254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313
              R +DY R+R++ +   A+++ DMAHISGLVAA+V+  PF Y DVVTTTTHKSLRGPRG 
Sbjct:   235 ARLYDYARIRKVCNKQKAVMLADMAHISGLVAANVIPSPFDYADVVTTTTHKSLRGPRGA 294

Query:   314 MIFFKKDPV----LGVEL----ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV 365
             MIFF+K        G E+    E  IN AVFPGLQGGPHNHTI GLAV LK A + E+K 
Sbjct:   295 MIFFRKGVKEINKQGKEVLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTSEYKA 354

Query:   366 YQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNK 425
             YQ +V+SN    A  L+E GY+LVSGG+DNHLVLV+L+P GIDG+RVEK+L+   I  NK
Sbjct:   355 YQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNK 414

Query:   426 NSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQD 485
             N+VPGD SA+VPGGIR+G+PA+T+RGF E++F  +A++  + V I L+ K   QG+KL+D
Sbjct:   415 NTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKD 474

Query:   486 FMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 519
             F++ + S + ++ + +A LR  VE    QFP  G
Sbjct:   475 FVSAMESSS-TIQSEIAKLRHEVEEFAKQFPTIG 507

GO:0003824 "catalytic activity" evidence=IEA

GO:0004372 "glycine hydroxymethyltransferase activity" evidence=IEA;ISS;TAS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006544 "glycine metabolic process" evidence=IEA;ISS

GO:0006563 "L-serine metabolic process" evidence=IEA;ISS

GO:0019464 "glycine decarboxylation via glycine cleavage system" evidence=IMP

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=TAS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0010319 "stromule" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009853 "photorespiration" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0008266 "poly(U) RNA binding" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

RGD|1312011 Shmt1 "serine hydroxymethyltransferase 1 (soluble)" [Rattus norvegicus (taxid:10116)]

 Score = 1442 (512.7 bits), Expect = 1.2e-147, P = 1.2e-147
 Identities = 281/457 (61%), Positives = 344/457 (75%)

Query:    74 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
             L E+D EV  II KE  RQ   LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG
Sbjct:   223 LKESDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 282

Query:   134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 193
              E+IDELETLCQKRAL A++LD   WGVNVQP SGSPANF VYTA+++PH RIMGLDLP 
Sbjct:   283 TEFIDELETLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 342

Query:   194 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253
             GGHL+HGFMT K+++S TSI+FESMPY++   TG ++YD LE+ A LF PKLIIAG S Y
Sbjct:   343 GGHLTHGFMTDKKKISATSIFFESMPYKVYPDTGYINYDQLEENASLFHPKLIIAGTSCY 402

Query:   254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313
              R+ DY R+R+IAD  GA LM DMAHISGLVAA VV  PF++C VVTTTTHK+LRG R G
Sbjct:   403 SRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAG 462

Query:   314 MIFFKK-----DPVLG----VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 364
             MIF++K     DP  G     ELES IN+AVFPGLQGGPHNH I G+AV LK A + EFK
Sbjct:   463 MIFYRKGVRSVDPKTGEETYYELESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTTEFK 522

Query:   365 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 424
             +YQ +V++NCRAL+  L ELGYK+V+GGSDNHL+L+DLRP G DG R EK+L+  SI  N
Sbjct:   523 IYQLQVLANCRALSDALTELGYKIVTGGSDNHLILMDLRPKGTDGGRAEKVLEACSIACN 582

Query:   425 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKK-LVQGSKL 483
             KN+ PGDKSAL P G+R+G+PA+T+RG  E++F  IA FIH G+E+TL+ +  +   + L
Sbjct:   583 KNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKIAHFIHRGIELTLQIQSHMTMRATL 642

Query:   484 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
             ++F   +T       + VA LR  VE   + F +PG+
Sbjct:   643 KEFKEKLTGDE-KFQSAVAALREEVENFASNFSLPGL 678

GO:0004372 "glycine hydroxymethyltransferase activity" evidence=ISO;IDA;TAS

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=ISO;IDA;TAS

GO:0006544 "glycine metabolic process" evidence=IDA;TAS

GO:0006545 "glycine biosynthetic process" evidence=IDA

GO:0006563 "L-serine metabolic process" evidence=TAS

GO:0006565 "L-serine catabolic process" evidence=IEA;ISO

GO:0008732 "L-allo-threonine aldolase activity" evidence=IDA

GO:0009113 "purine nucleobase biosynthetic process" evidence=IEA;ISO

GO:0016597 "amino acid binding" evidence=IPI

GO:0019264 "glycine biosynthetic process from serine" evidence=IDA

GO:0030170 "pyridoxal phosphate binding" evidence=ISO;IDA;TAS

GO:0035999 "tetrahydrofolate interconversion" evidence=IEA

GO:0042802 "identical protein binding" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0046655 "folic acid metabolic process" evidence=IEA;ISO

GO:0051262 "protein tetramerization" evidence=ISO

GO:0051289 "protein homotetramerization" evidence=IDA

UNIPROTKB|P34896 SHMT1 "Serine hydroxymethyltransferase, cytosolic" [Homo sapiens (taxid:9606)]

 Score = 1428 (507.7 bits), Expect = 3.5e-146, P = 3.5e-146
 Identities = 279/457 (61%), Positives = 343/457 (75%)

Query:    74 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
             L ++D EV  II KE  RQ   LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG
Sbjct:    26 LKDSDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 85

Query:   134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 193
              E+IDELETLCQKRAL A+ LD   WGVNVQP SGSPANF VYTA+++PH RIMGLDLP 
Sbjct:    86 TEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 145

Query:   194 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253
             GGHL+HGFMT K+++S TSI+FESMPY+++  TG ++YD LE+ A LF PKLIIAG S Y
Sbjct:   146 GGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCY 205

Query:   254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313
              R+ +Y R+R+IAD  GA LM DMAHISGLVAA VV  PF++C VVTTTTHK+LRG R G
Sbjct:   206 SRNLEYARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAG 265

Query:   314 MIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 364
             MIF++K     DP  G E    LES IN+AVFPGLQGGPHNH I G+AV LK A + EFK
Sbjct:   266 MIFYRKGVKSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFK 325

Query:   365 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 424
             VYQ++VV+NCRAL+  L ELGYK+V+GGSDNHL+LVDLR  G DG R EK+L+  SI  N
Sbjct:   326 VYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 385

Query:   425 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQ-GSKL 483
             KN+ PGD+SAL P G+R+G+PA+T+RG  EK+F  +A FIH G+E+TL+ +      + L
Sbjct:   386 KNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATL 445

Query:   484 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
             ++F   +    +     V  LR  VE+  + FP+PG+
Sbjct:   446 KEFKERLAGDKYQAA--VQALREEVESFASLFPLPGL 480

GO:0005739 "mitochondrion" evidence=IEA

GO:0008732 "L-allo-threonine aldolase activity" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0019264 "glycine biosynthetic process from serine" evidence=IEA

GO:0051289 "protein homotetramerization" evidence=IEA

GO:0035999 "tetrahydrofolate interconversion" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0051262 "protein tetramerization" evidence=IDA

GO:0046655 "folic acid metabolic process" evidence=IDA;TAS

GO:0030170 "pyridoxal phosphate binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0004372 "glycine hydroxymethyltransferase activity" evidence=IDA;TAS

GO:0006565 "L-serine catabolic process" evidence=IDA

GO:0009113 "purine nucleobase biosynthetic process" evidence=IDA

GO:0006766 "vitamin metabolic process" evidence=TAS

GO:0006767 "water-soluble vitamin metabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0045329 "carnitine biosynthetic process" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q5E9P9 SHMT1 "Serine hydroxymethyltransferase, cytosolic" [Bos taurus (taxid:9913)]

 Score = 1424 (506.3 bits), Expect = 9.3e-146, P = 9.3e-146
 Identities = 279/458 (60%), Positives = 342/458 (74%)

Query:    74 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
             L + D EV  II KE  RQ   LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG
Sbjct:    26 LKDNDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 85

Query:   134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 193
              E+IDELE LCQKRAL  + LD   WGVNVQP SGSPANF VYTA+++PH RIMGLDLP 
Sbjct:    86 TEFIDELEVLCQKRALQVYGLDSQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 145

Query:   194 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253
             GGHL+HGFMT K+++S TSI+FESMPY+++  TG ++YD LE+ A LF P+LIIAG S Y
Sbjct:   146 GGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPRLIIAGTSCY 205

Query:   254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313
              R+ DY R+R+IAD  GA LM DMAH+SGLVAA VV  PF++C VV+TTTHK+LRG R G
Sbjct:   206 SRNLDYARLRKIADDNGAYLMADMAHVSGLVAAGVVPSPFEHCHVVSTTTHKTLRGCRAG 265

Query:   314 MIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 364
             MIF++K     DP  G E    LES IN+AVFPGLQGGPHNH I G+AV LK A +PEF+
Sbjct:   266 MIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFR 325

Query:   365 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 424
              YQ +VV+NCRALA  L+ LGY++V+GGSDNHL+LVDLR  G DG R EK+L+  SI  N
Sbjct:   326 AYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 385

Query:   425 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSK-- 482
             KN+ PGDKSAL P G+R+G+PA+T+RG  E++F  +A FIH G+E+TL+ +  V G K  
Sbjct:   386 KNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQDAV-GVKAT 444

Query:   483 LQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
             L++FM  +          VA LR  VE+  T FP+PG+
Sbjct:   445 LKEFMEKLAGAE-EHHRAVAALRAEVESFATLFPLPGL 481

GO:0035999 "tetrahydrofolate interconversion" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

GO:0046655 "folic acid metabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0009113 "purine nucleobase biosynthetic process" evidence=IEA

GO:0006565 "L-serine catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004372 "glycine hydroxymethyltransferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006544 "glycine metabolic process" evidence=IEA

UNIPROTKB|Q3SZ20 SHMT2 "Serine hydroxymethyltransferase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 1423 (506.0 bits), Expect = 1.2e-145, P = 1.2e-145
 Identities = 280/492 (56%), Positives = 354/492 (71%)

Query:    38 RCSSIEGSLVTGRXXXXXXXXIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLE 97
             RC  + G  V  +          E     S     SL ++DPE+ E++ +EK+RQ + LE
Sbjct:    15 RCGQLVGMAVRCQHSEAAQTQTGEASKGWSG--QESLSDSDPEMWELLRREKDRQCRGLE 72

Query:    98 LIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDEN 157
             LIASENF SRA +EA+GSCL NKYSEG PGKRYYGG E +DE+E LCQ+RAL AF+LD  
Sbjct:    73 LIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPA 132

Query:   158 KWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES 217
             +WGVNVQP SGSPAN   YTA+L+PHDRIMGLDLP GGHL+HG+M+  +R+S TSI+FES
Sbjct:   133 QWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFES 192

Query:   218 MPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDM 277
             MPY+L+  TGL+DYD L  TA LF+P+LIIAG SAY R  DY RMR++ D V A L+ DM
Sbjct:   193 MPYKLNPQTGLIDYDQLALTARLFKPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADM 252

Query:   278 AHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKK-----DPVLGVEL----E 328
             AHISGLVAA V+  PFK+ D+VTTTTHK+LRG R G+IF++K     DP  G E+    E
Sbjct:   253 AHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFYRKGVQAVDPKTGREIPYTFE 312

Query:   329 SAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL 388
               IN AVFP LQGGPHNH I  +AV LK A +P F+ Y  +++ N +A+A+ L+E GY L
Sbjct:   313 DRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQILKNAQAMANALLERGYSL 372

Query:   389 VSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMT 448
             VSGG+DNHLVLVDLRP G+DGAR E++L++ SIT NKN+ PGD+SA+ PGG+R+G+PA+T
Sbjct:   373 VSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALT 432

Query:   449 TRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTS-PNFSLMNNVADLRGR 507
             +RGF E +F  +  FI EGV I LE K   + +KLQDF +F+   P  S  + +ADLR R
Sbjct:   433 SRGFLEDDFRKVVGFIDEGVNIGLEVKS--KTTKLQDFKSFLLKDPETS--HQLADLRQR 488

Query:   508 VEALTTQFPIPG 519
             VE     FP+PG
Sbjct:   489 VEQFARAFPMPG 500

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0042645 "mitochondrial nucleoid" evidence=ISS

GO:0003682 "chromatin binding" evidence=ISS

GO:0035999 "tetrahydrofolate interconversion" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0004372 "glycine hydroxymethyltransferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006563 "L-serine metabolic process" evidence=IEA

GO:0006544 "glycine metabolic process" evidence=IEA

UNIPROTKB|E2RIV3 SHMT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1422 (505.6 bits), Expect = 1.5e-145, P = 1.5e-145
 Identities = 275/457 (60%), Positives = 342/457 (74%)

Query:    74 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
             L + D EV  II KE  RQ   LELIASENFTSRAV+EA+GSCL NKYSEG PG+RYYGG
Sbjct:    26 LKDNDTEVYNIIKKESNRQRVGLELIASENFTSRAVLEALGSCLNNKYSEGYPGQRYYGG 85

Query:   134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 193
              E+IDELE LCQKRAL  + LD   WGVNVQP SGSPANF VYTA+++PH RIMGLDLP 
Sbjct:    86 TEFIDELEILCQKRALQVYGLDPECWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 145

Query:   194 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253
             GGHL+HGFMT K+++S TSI+FESMPY+++  TG ++YD LE+ A LF PKLIIAG S Y
Sbjct:   146 GGHLTHGFMTDKKKISATSIFFESMPYKVNPETGYINYDQLEENARLFHPKLIIAGTSCY 205

Query:   254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313
              R+ DY R+R+IAD  GA LM DMAHISGLVAA VV  PF++C VV+TTTHK+LRG R G
Sbjct:   206 SRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTLRGCRAG 265

Query:   314 MIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 364
             +IF+++     DP  G E    LES IN+AVFPGLQGGPHNH I G+AV LK A +PEF+
Sbjct:   266 IIFYRRGVRSVDPKTGKETLYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFR 325

Query:   365 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 424
             +YQ++VV+NCR LA  L+ELGYK+V+GGSDNHL+LVDLR  G DG R EK+L+  SI  N
Sbjct:   326 LYQHQVVANCRVLAETLMELGYKVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 385

Query:   425 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQG-SKL 483
             KN+ PGDKSAL P G+R+G+PA+T+RG  EKEF  +A F+H G+E+TL+ +  +   + L
Sbjct:   386 KNTCPGDKSALRPSGLRLGTPALTSRGLLEKEFQKVAQFVHRGIELTLQIQNDIGARATL 445

Query:   484 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
             ++F   +          +  LR  VE+  + FP+PG+
Sbjct:   446 KEFREKLAGDE-KHQRAIRALREEVESFASLFPLPGL 481

GO:0035999 "tetrahydrofolate interconversion" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

GO:0046655 "folic acid metabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0009113 "purine nucleobase biosynthetic process" evidence=IEA

GO:0006565 "L-serine catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006544 "glycine metabolic process" evidence=IEA

GO:0004372 "glycine hydroxymethyltransferase activity" evidence=IEA

UNIPROTKB|E1BS67 SHMT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1421 (505.3 bits), Expect = 1.9e-145, P = 1.9e-145
 Identities = 276/471 (58%), Positives = 346/471 (73%)

Query:    61 EIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNK 120
             E+    S  +   L   DPEV  II KEK+RQ   LELIASENF S AV+EA+GSCL NK
Sbjct:    15 ELWASHSKMLLEPLDSNDPEVYNIIKKEKQRQRLGLELIASENFASCAVLEALGSCLNNK 74

Query:   121 YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL 180
             YSEG PG+RYYGG E++DELE LCQKRAL AF LD  KWGVNVQP SGSPANF VYTA++
Sbjct:    75 YSEGYPGQRYYGGTEFVDELERLCQKRALQAFRLDPQKWGVNVQPYSGSPANFAVYTALV 134

Query:   181 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL 240
             +PH RIMGLDLP GGHL+HGFMT K+++S TS++FESMPY+++  TG +DYD LE+ A L
Sbjct:   135 EPHGRIMGLDLPDGGHLTHGFMTDKKKISATSVFFESMPYKVNPKTGYIDYDKLEENARL 194

Query:   241 FRPKLIIA-GASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVV 299
             F PKLIIA G S Y R+ DY RMRQIA+A  A LM DMAHISGLVAA VV  PF++CDVV
Sbjct:   195 FHPKLIIAAGVSCYSRNLDYARMRQIANANSAYLMADMAHISGLVAAGVVPSPFEHCDVV 254

Query:   300 TTTTHKSLRGPRGGMIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGG 350
             +TTTHK+LRG R GMIF++K     DP  G E    LES IN AVFPGLQGGPHNH I G
Sbjct:   255 STTTHKTLRGCRAGMIFYRKGTRSTDPKTGKETLYNLESLINQAVFPGLQGGPHNHAIAG 314

Query:   351 LAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGA 410
             +AV L+ A +PEFK YQ +VV+NC+ LA+ L+E+GY +V+GGSDNHL+L+DLR  G DG 
Sbjct:   315 IAVALQQAMTPEFKAYQQQVVANCKTLAAALMEMGYDIVTGGSDNHLILLDLRNRGTDGG 374

Query:   411 RVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI 470
             R E++L++ SI  NKN+ PGD SAL P G+R G+PA+T+RGF + +F  +A +IH+G+E+
Sbjct:   375 RAERVLELCSIACNKNTCPGDVSALRPSGLRFGTPALTSRGFRQDDFRTVARYIHKGIEL 434

Query:   471 TLEAKK-LVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
             TL  +K +   + L++F   +    +     +  L+  VEA    FP+PG+
Sbjct:   435 TLRVQKDMNPKATLKEFKEKLEEEKYQ--GELKALKEEVEAFAATFPLPGL 483

GO:0004372 "glycine hydroxymethyltransferase activity" evidence=IEA

GO:0006544 "glycine metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0035999 "tetrahydrofolate interconversion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006565 "L-serine catabolic process" evidence=IEA

GO:0009113 "purine nucleobase biosynthetic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0046655 "folic acid metabolic process" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

UNIPROTKB|P34897 SHMT2 "Serine hydroxymethyltransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 1421 (505.3 bits), Expect = 1.9e-145, P = 1.9e-145
 Identities = 274/456 (60%), Positives = 344/456 (75%)

Query:    73 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 132
             SL ++DPE+ E++ +EK+RQ + LELIASENF SRA +EA+GSCL NKYSEG PGKRYYG
Sbjct:    48 SLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYG 107

Query:   133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 192
             G E +DE+E LCQ+RAL AF+LD  +WGVNVQP SGSPAN  VYTA+L+PHDRIMGLDLP
Sbjct:   108 GAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLP 167

Query:   193 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 252
              GGHL+HG+M+  +R+S TSI+FESMPY+L+  TGL+DY+ L  TA LFRP+LIIAG SA
Sbjct:   168 DGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSA 227

Query:   253 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 312
             Y R  DY RMR++ D V A L+ DMAHISGLVAA V+  PFK+ D+VTTTTHK+LRG R 
Sbjct:   228 YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARS 287

Query:   313 GMIFFKK-----DPVLGVEL----ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 363
             G+IF++K     DP  G E+    E  IN AVFP LQGGPHNH I  +AV LK A +P F
Sbjct:   288 GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMF 347

Query:   364 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITL 423
             + Y  +V+ N RA+A  L+E GY LVSGG+DNHLVLVDLRP G+DGAR E++L++ SIT 
Sbjct:   348 REYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITA 407

Query:   424 NKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKL 483
             NKN+ PGD+SA+ PGG+R+G+PA+T+R F E +F  + DFI EGV I LE K   + +KL
Sbjct:   408 NKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKS--KTAKL 465

Query:   484 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 519
             QDF +F+   +      +A+LR RVE     FP+PG
Sbjct:   466 QDFKSFLLKDS-ETSQRLANLRQRVEQFARAFPMPG 500

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0008732 "L-allo-threonine aldolase activity" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0019264 "glycine biosynthetic process from serine" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0051289 "protein homotetramerization" evidence=IEA

GO:0035999 "tetrahydrofolate interconversion" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0004372 "glycine hydroxymethyltransferase activity" evidence=IDA

GO:0006730 "one-carbon metabolic process" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0042645 "mitochondrial nucleoid" evidence=IDA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

UNIPROTKB|F1SL74 LOC100626911 "Serine hydroxymethyltransferase" [Sus scrofa (taxid:9823)]

 Score = 1421 (505.3 bits), Expect = 1.9e-145, P = 1.9e-145
 Identities = 276/456 (60%), Positives = 342/456 (75%)

Query:    73 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 132
             SL ++DPE+ E++ +EK+RQ + LELIASENF SRA +EA+GSCL NKYSEG PGKRYYG
Sbjct:    48 SLSDSDPEMWELLRREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYG 107

Query:   133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 192
             G E +DE+E LCQ+RAL AF+LD  +WGVNVQP SGSPAN   YTA+L+PHDRIMGLDLP
Sbjct:   108 GAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLP 167

Query:   193 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 252
              GGHL+HG+MT  +R+S TSI+FESMPY+L+  TGL+DYD L  TA LFRP+LIIAG SA
Sbjct:   168 DGGHLTHGYMTDVKRISATSIFFESMPYKLNPKTGLIDYDQLALTARLFRPRLIIAGTSA 227

Query:   253 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 312
             Y R  DY RMR++ D V A L+ DMAHISGLVAA V+  PF++ DVVTTTTHK+LRG R 
Sbjct:   228 YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFEHADVVTTTTHKTLRGARS 287

Query:   313 GMIFFKK-----DPVLGVEL----ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 363
             G+IF++K     DP  G E+    E  IN AVFP LQGGPHNH I  +AV LK A +P F
Sbjct:   288 GLIFYRKGVRTVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMF 347

Query:   364 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITL 423
             + Y  +V+ N RA+A  L+E GY LVSGG+DNHLVLVDLRP G+DGARVE++L++ SIT 
Sbjct:   348 REYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARVERVLELVSITA 407

Query:   424 NKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKL 483
             NKN+ PGD+SA+ PGG+R+G+PA+T+R F E +F  +  FI EGV I LE K   + +KL
Sbjct:   408 NKNTCPGDRSAITPGGLRLGTPALTSRQFREDDFRKVVAFIDEGVSIGLEVKS--KTTKL 465

Query:   484 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 519
             QDF +F+          +ADLR RVE     FP+PG
Sbjct:   466 QDFKSFLLKDP-ETCRRLADLRQRVEQFARAFPMPG 500

GO:0035999 "tetrahydrofolate interconversion" evidence=IEA

GO:0004372 "glycine hydroxymethyltransferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006563 "L-serine metabolic process" evidence=IEA

GO:0006544 "glycine metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34898	GLYC_NEUCR	2, ., 1, ., 2, ., 1	0.5952	0.8615	0.9333	N/A	no
P34899	GLYM_PEA	2, ., 1, ., 2, ., 1	0.6155	0.8480	0.8513	N/A	no
Q75BQ6	GLYC_ASHGO	2, ., 1, ., 2, ., 1	0.5531	0.8576	0.9509	yes	no
P37291	GLYC_YEAST	2, ., 1, ., 2, ., 1	0.6014	0.7942	0.8805	yes	no
Q60V73	GLYC_CAEBR	2, ., 1, ., 2, ., 1	0.6084	0.8423	0.8571	N/A	no
B0K742	GLYA_THEP3	2, ., 1, ., 2, ., 1	0.5333	0.7192	0.9055	yes	no
Q3K5K9	GLYA3_PSEPF	2, ., 1, ., 2, ., 1	0.5103	0.7192	0.8968	yes	no
B1I6M4	GLYA_DESAP	2, ., 1, ., 2, ., 1	0.5419	0.725	0.9084	yes	no
Q3A934	GLYA_CARHZ	2, ., 1, ., 2, ., 1	0.5125	0.7346	0.9073	yes	no
P35623	GLYC_SHEEP	2, ., 1, ., 2, ., 1	0.6061	0.8576	0.9214	N/A	no
B9LKK8	GLYA_CHLSY	2, ., 1, ., 2, ., 1	0.5152	0.7269	0.9021	yes	no
B8E008	GLYA_DICTD	2, ., 1, ., 2, ., 1	0.5177	0.7269	0.9130	yes	no
P14519	GLYM_RABIT	2, ., 1, ., 2, ., 1	0.6039	0.8519	0.8789	yes	no
Q8R887	GLYA_THETN	2, ., 1, ., 2, ., 1	0.5358	0.7192	0.9055	yes	no
B0K631	GLYA_THEPX	2, ., 1, ., 2, ., 1	0.5333	0.7192	0.9055	yes	no
A4XL61	GLYA_CALS8	2, ., 1, ., 2, ., 1	0.5126	0.7269	0.9064	yes	no
O62585	GLYC_ENCCU	2, ., 1, ., 2, ., 1	0.5044	0.8403	0.95	yes	no
P50432	GLYC_CAEEL	2, ., 1, ., 2, ., 1	0.6079	0.8461	0.8678	yes	no
P50433	GLYM_SOLTU	2, ., 1, ., 2, ., 1	0.6244	0.8480	0.8513	N/A	no
P34897	GLYM_HUMAN	2, ., 1, ., 2, ., 1	0.6008	0.8538	0.8809	yes	no
Q5E9P9	GLYC_BOVIN	2, ., 1, ., 2, ., 1	0.6061	0.8576	0.9214	yes	no
A8MGL7	GLYA_ALKOO	2, ., 1, ., 2, ., 1	0.5216	0.725	0.9195	yes	no
Q6FUP6	GLYC_CANGA	2, ., 1, ., 2, ., 1	0.5604	0.8461	0.9381	yes	no
O13425	GLYM_CANAX	2, ., 1, ., 2, ., 1	0.5615	0.8692	0.9168	N/A	no
P49357	GLYM_FLAPR	2, ., 1, ., 2, ., 1	0.6111	0.8461	0.8510	N/A	no
O13426	GLYC_CANAL	2, ., 1, ., 2, ., 1	0.5802	0.8461	0.9361	N/A	no
B9MR57	GLYA_CALBD	2, ., 1, ., 2, ., 1	0.5229	0.7230	0.9060	yes	no
O66776	GLYA_AQUAE	2, ., 1, ., 2, ., 1	0.5183	0.7461	0.9065	yes	no
P49358	GLYN_FLAPR	2, ., 1, ., 2, ., 1	0.6230	0.8442	0.8491	N/A	no
Q54Z26	GLYC1_DICDI	2, ., 1, ., 2, ., 1	0.5912	0.8461	0.9628	yes	no
Q10104	GLYM_SCHPO	2, ., 1, ., 2, ., 1	0.5842	0.85	0.9057	yes	no
Q4K4P6	GLYA2_PSEF5	2, ., 1, ., 2, ., 1	0.5077	0.7192	0.8968	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.2	0.963
4th Layer	2.1.2.1	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	520
PLN03226	475	PLN03226, PLN03226, serine hydroxymethyltransferas	0.0
PTZ00094	452	PTZ00094, PTZ00094, serine hydroxymethyltransferas	0.0
pfam00464	380	pfam00464, SHMT, Serine hydroxymethyltransferase	0.0
cd00378	402	cd00378, SHMT, Serine-glycine hydroxymethyltransfe	0.0
COG0112	413	COG0112, GlyA, Glycine/serine hydroxymethyltransfe	0.0
PRK00011	416	PRK00011, glyA, serine hydroxymethyltransferase; R	0.0
PLN02271	586	PLN02271, PLN02271, serine hydroxymethyltransferas	0.0
PRK13034	416	PRK13034, PRK13034, serine hydroxymethyltransferas	0.0
PRK13580	493	PRK13580, PRK13580, serine hydroxymethyltransferas	1e-122
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	1e-26
cd00609	350	cd00609, AAT_like, Aspartate aminotransferase fami	1e-05
COG0520	405	COG0520, csdA, Selenocysteine lyase/Cysteine desul	3e-05
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	0.001

>gnl|CDD|215639 PLN03226, PLN03226, serine hydroxymethyltransferase; Provisional

 Score =  899 bits (2326), Expect = 0.0
 Identities = 320/469 (68%), Positives = 370/469 (78%), Gaps = 11/469 (2%)

Query: 60  PEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTN 119
            +       + +  L E DPE+ +II KEK RQ+K LELIASENFTSRAVMEA+GSCLTN
Sbjct: 1   EKSMVSVPKWGNAPLEEVDPEIADIIEKEKRRQWKGLELIASENFTSRAVMEALGSCLTN 60

Query: 120 KYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 179
           KYSEGLPG RYYGGNEYID++ETLCQKRAL AF LD  KWGVNVQPLSGSPANF VYTA+
Sbjct: 61  KYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTAL 120

Query: 180 LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAI 239
           L+PHDRIMGLDLPHGGHLSHG+ T  +++S TSIYFESMPYRLDESTGL+DYD LEK A+
Sbjct: 121 LQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAM 180

Query: 240 LFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVV 299
           LFRPKLIIAGASAYPRD+DY RMR+IAD VGALLM DMAHISGLVAA   A PF+YCDVV
Sbjct: 181 LFRPKLIIAGASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVV 240

Query: 300 TTTTHKSLRGPRGGMIFFKKDPVLG--------VELESAINNAVFPGLQGGPHNHTIGGL 351
           TTTTHKSLRGPRGGMIFF+K P            + E  IN AVFPGLQGGPHNHTI  L
Sbjct: 241 TTTTHKSLRGPRGGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAAL 300

Query: 352 AVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGAR 411
           AV LK A +PEFK YQ +V +N  ALA+RL+  GYKLV+GG+DNHLVL DLRP+G+ G+R
Sbjct: 301 AVALKQAMTPEFKAYQKQVKANAAALANRLMSKGYKLVTGGTDNHLVLWDLRPLGLTGSR 360

Query: 412 VEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT 471
           VEK+LD+A ITLNKN+VPGD SALVPGG+RIG+PAMT+RG  EK+F  +A+F+H  V I 
Sbjct: 361 VEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTIA 420

Query: 472 LEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
           L+ +K   G KL+DF   + S +FS   ++  LR  VE   T FP+PG 
Sbjct: 421 LKIQK-EHGKKLKDFKKGLESNDFS--KDIEALRAEVEEFATSFPMPGF 466

Length = 475

>gnl|CDD|240264 PTZ00094, PTZ00094, serine hydroxymethyltransferase; Provisional

 Score =  763 bits (1972), Expect = 0.0
 Identities = 282/448 (62%), Positives = 345/448 (77%), Gaps = 11/448 (2%)

Query: 73  SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 132
           SL EADPE+ E+I KEKERQ + LELIASENFTSRAV+E +GSC TNKY+EGLPG RYYG
Sbjct: 14  SLKEADPELYELIEKEKERQIEGLELIASENFTSRAVLECLGSCFTNKYAEGLPGNRYYG 73

Query: 133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 192
           GNE +D++E LCQKRAL AF LD  +WGVNVQP SGSPANF VYTA+L+PHDRIMGLDLP
Sbjct: 74  GNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLP 133

Query: 193 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 252
            GGHL+HGF T K++VS TSIYFES+PY+++E  GL+DYD LE+ A  FRPKLIIAGASA
Sbjct: 134 SGGHLTHGFYTAKKKVSATSIYFESLPYQVNE-KGLIDYDKLEELAKAFRPKLIIAGASA 192

Query: 253 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 312
           YPRD DY R R+I D+VGA LM D+AH SGLVAA V+  PF Y DVVTTTTHKSLRGPR 
Sbjct: 193 YPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPRS 252

Query: 313 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVS 372
           G+IF++K   +  ++E+ IN AVFPGLQGGPHNH I  +AV LK  QSPE+K Y  +V+ 
Sbjct: 253 GLIFYRKK--VKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLK 310

Query: 373 NCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK 432
           N +ALA+ L + GY LV+GG+DNHLVLVDLRP GI G+++EK+LD  +I++NKN++PGDK
Sbjct: 311 NAKALAAALEKRGYDLVTGGTDNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGDK 370

Query: 433 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFM-NFVT 491
           SAL P G+R+G+PA+TTRG  EK+F  +ADF+   V++  E +K V G KL DF      
Sbjct: 371 SALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKLAQEIQKQV-GKKLVDFKKALEK 429

Query: 492 SPNFSLMNNVADLRGRVEALTTQFPIPG 519
           +P       +  LR  V    +QFP PG
Sbjct: 430 NP------ELQKLRQEVVEFASQFPFPG 451

Length = 452

>gnl|CDD|189558 pfam00464, SHMT, Serine hydroxymethyltransferase

 Score =  663 bits (1713), Expect = 0.0
 Identities = 254/392 (64%), Positives = 299/392 (76%), Gaps = 13/392 (3%)

Query: 74  LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
           L ++DPE+ +II KEKERQ + +ELIASENFTSRAVMEA+GS LTNKY+EG PGKRYYGG
Sbjct: 1   LSDSDPEIFDIIKKEKERQREGIELIASENFTSRAVMEALGSVLTNKYAEGYPGKRYYGG 60

Query: 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 193
            EY+DE+ETL Q RA   F LD    GVNVQPLSGS AN  VYTA+L P DRIMGLDLPH
Sbjct: 61  CEYVDEVETLAQDRAKELFGLD----GVNVQPLSGSQANLAVYTALLNPGDRIMGLDLPH 116

Query: 194 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253
           GGHL+HG+         +  +FESMPY +D  TGL+DYD LEK A LF+PKLI+AG SAY
Sbjct: 117 GGHLTHGYPVNF-----SGKFFESMPYGVDPDTGLIDYDQLEKNAKLFKPKLIVAGTSAY 171

Query: 254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313
            R  DY R R+IAD VGA LM+DMAHI+GLVAA V+  PF Y  VVTTTTHK+LRGPRGG
Sbjct: 172 SRLIDYARFREIADEVGAYLMVDMAHIAGLVAAGVIPSPFPYAHVVTTTTHKTLRGPRGG 231

Query: 314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 373
           MIFF++      ELE  IN+AVFPGLQGGP NH I   AV LK A +PEFKVYQ +V+ N
Sbjct: 232 MIFFREIL---YELEKKINSAVFPGLQGGPLNHVIAAKAVALKQALTPEFKVYQQQVLKN 288

Query: 374 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 432
            +ALA  L E GYKLVSGG+DNHLVLVDLRP G+DG R EK L+ A+IT NKN++PGD K
Sbjct: 289 AKALAEALKERGYKLVSGGTDNHLVLVDLRPKGLDGKRAEKALERANITANKNTIPGDPK 348

Query: 433 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 464
           S  V  G+R+G+PA+T+RGF E +F  +A +I
Sbjct: 349 SPFVTSGLRLGTPALTSRGFGEADFEEVAGYI 380

Length = 380

>gnl|CDD|99733 cd00378, SHMT, Serine-glycine hydroxymethyltransferase (SHMT)

 Score =  650 bits (1680), Expect = 0.0
 Identities = 238/403 (59%), Positives = 284/403 (70%), Gaps = 13/403 (3%)

Query: 76  EADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNE 135
           + DPE+ EII KE ERQ ++LELIASENFTS AVMEA+GS LTNKY+EG PGKRYYGG E
Sbjct: 2   DVDPEIAEIIKKENERQRETLELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCE 61

Query: 136 YIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGG 195
           Y+DE+E L  +RA   F  +      NVQP SGS AN  VY A+L+P D IMGLDL HGG
Sbjct: 62  YVDEIEDLAIERAKKLFGAE----YANVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGG 117

Query: 196 HLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR 255
           HL+HG  T   +VS +   FES+PY +D  TGL+DYD LEK A+ F+PKLI+AGASAYPR
Sbjct: 118 HLTHGSFT---KVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAYPR 174

Query: 256 DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMI 315
             D+ R R+IAD VGA L++DMAH++GLVA  V  +P    DVVTTTTHK+LRGPRGG+I
Sbjct: 175 PIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRGGLI 234

Query: 316 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCR 375
             +K      EL   IN+AVFPGLQGGPH H I   AV LK A  PEFK Y  +VV N +
Sbjct: 235 LTRKG-----ELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAK 289

Query: 376 ALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKS-A 434
           ALA  L E G+K+VSGG+DNHLVLVDLRP GI G   E  L+ A IT+NKN++P D S  
Sbjct: 290 ALAEALKERGFKVVSGGTDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSSP 349

Query: 435 LVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKL 477
            VP GIRIG+PAMTTRG  E+E   IADFI   ++   +    
Sbjct: 350 FVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKDAEDVAVA 392

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. Length = 402

>gnl|CDD|223190 COG0112, GlyA, Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

 Score =  619 bits (1598), Expect = 0.0
 Identities = 231/453 (50%), Positives = 284/453 (62%), Gaps = 41/453 (9%)

Query: 68  SFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPG 127
           S    SL + DPE+ E I +E ERQ + +ELIASENFTS AVMEA GS LTNKY+EG PG
Sbjct: 1   SRSYASLADYDPEIFEAIQQELERQREHIELIASENFTSPAVMEAQGSDLTNKYAEGYPG 60

Query: 128 KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIM 187
           KRYYGG EY+DE+E L  +RA   F  +      NVQP SGS AN  VY A+L+P D IM
Sbjct: 61  KRYYGGCEYVDEVEELAIERAKKLFGAE----YANVQPHSGSQANQAVYLALLQPGDTIM 116

Query: 188 GLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII 247
           GLDL HGGHL+HG       V+ +   F  + Y +D  TGL+DYD +EK A   +PKLII
Sbjct: 117 GLDLSHGGHLTHG-----SPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLII 171

Query: 248 AGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL 307
           AG SAY R  D+ R R+IAD VGA LM+DMAH++GL+A  V  +P  + DVVTTTTHK+L
Sbjct: 172 AGGSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPHADVVTTTTHKTL 231

Query: 308 RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 367
           RGPRGG+I    +     EL   IN+AVFPGLQGGP  H I   AV  K A  PEFK Y 
Sbjct: 232 RGPRGGIILTNDE-----ELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYA 286

Query: 368 NKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNS 427
            +VV N +ALA  L E G+K+VSGG+DNHLVLVDLR  G+ G + E  L+ A IT+NKN+
Sbjct: 287 KQVVKNAKALAEALKERGFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGITVNKNA 346

Query: 428 VPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDF 486
           +P D +S  V  GIRIG+PA+TTRGF E E   IAD I +     L+  K V        
Sbjct: 347 IPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIAD----VLDGLKDV-------- 394

Query: 487 MNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 519
                          A+++  V  L  +FP+  
Sbjct: 395 --------------PAEVKEEVAELCRRFPLYK 413

Length = 413

>gnl|CDD|234571 PRK00011, glyA, serine hydroxymethyltransferase; Reviewed

 Score =  608 bits (1572), Expect = 0.0
 Identities = 224/448 (50%), Positives = 283/448 (63%), Gaps = 39/448 (8%)

Query: 73  SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 132
           +L E DPE+ + I +E +RQ + +ELIASENF S AVMEA GS LTNKY+EG PGKRYYG
Sbjct: 5   NLAEYDPEIADAIEQELKRQEEHIELIASENFVSPAVMEAQGSVLTNKYAEGYPGKRYYG 64

Query: 133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 192
           G EY+D +E L   RA   F  +      NVQP SGS AN  VY A+LKP D I+G+DL 
Sbjct: 65  GCEYVDVVEQLAIDRAKELFGAEY----ANVQPHSGSQANAAVYFALLKPGDTILGMDLA 120

Query: 193 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 252
           HGGHL+HG       V+ +   +  + Y +DE TGL+DYD +EK A+  +PKLIIAGASA
Sbjct: 121 HGGHLTHG-----SPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGASA 175

Query: 253 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 312
           Y R  D+ R R+IAD VGA LM+DMAHI+GLVAA V   P  + DVVTTTTHK+LRGPRG
Sbjct: 176 YSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRGPRG 235

Query: 313 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVS 372
           G+I    +     EL   IN+AVFPG+QGGP  H I   AV  K A  PEFK Y  +VV 
Sbjct: 236 GLILTNDE-----ELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVK 290

Query: 373 NCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD- 431
           N +ALA  L E G+++VSGG+DNHLVLVDLR  G+ G   E  L+ A+IT+NKN+VP D 
Sbjct: 291 NAKALAEALAERGFRVVSGGTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDP 350

Query: 432 KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVT 491
           +S  V  GIRIG+PA+TTRGF E E   IA+ I + ++                      
Sbjct: 351 RSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLD---------------------- 388

Query: 492 SPNFSLMNNVADLRGRVEALTTQFPIPG 519
             N      + +++  V+ L  +FP+  
Sbjct: 389 --NPDDEAVIEEVKEEVKELCKRFPLYK 414

Length = 416

>gnl|CDD|215153 PLN02271, PLN02271, serine hydroxymethyltransferase

 Score =  597 bits (1541), Expect = 0.0
 Identities = 254/466 (54%), Positives = 327/466 (70%), Gaps = 25/466 (5%)

Query: 71  DYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRY 130
           +  L EADP++ E++ KEK+RQFK +ELIASENF  RAVMEA+GS LTNKYSEG+PG RY
Sbjct: 126 NQPLPEADPDIHELMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARY 185

Query: 131 YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLD 190
           Y GN+YID++E LC +RALAAF LD  KWGVNVQP S + ANF VYT +L P DRIMGLD
Sbjct: 186 YTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLD 245

Query: 191 LPHGGHLSHGFMTPK-RRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 249
            P GGH+SHG+ TP  ++VSG SI+FES+PY+++  TG +DYD LE+ A+ FRPK++I G
Sbjct: 246 SPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICG 305

Query: 250 ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRG 309
            S+YPR++DY R RQIAD  GA+LM DMAHISGLVAA    +PF YCD+VT+TTHKSLRG
Sbjct: 306 GSSYPREWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRG 365

Query: 310 PRGGMIFFKKDPVL---------GVE-----LESAINNAVFPGLQGGPHNHTIGGLAVCL 355
           PRGG+IF++K P L         G +      E  IN AVFP LQGGPHN+ I  LA+ L
Sbjct: 366 PRGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIAL 425

Query: 356 KHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKI 415
           K   +PE+K Y  +V  N +ALAS L+    +LV+GG+DNHL+L DL  +G+ G   EK+
Sbjct: 426 KQVATPEYKAYMQQVKKNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKV 485

Query: 416 LDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAK 475
            +M  ITLNK ++ GD   + PGG+RIG+PAMT+RG  E +F  IADF+    +I    +
Sbjct: 486 CEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQIASAVQ 545

Query: 476 KLVQGSKLQDFMNFVTSPNFSLMNN--VADLRGRVEALTTQFPIPG 519
           +   G   ++F+         L NN  + +LR RVEA  +QF +PG
Sbjct: 546 R-EHGKLQKEFLK-------GLQNNKDIVELRNRVEAFASQFAMPG 583

Length = 586

>gnl|CDD|237280 PRK13034, PRK13034, serine hydroxymethyltransferase; Reviewed

 Score =  535 bits (1380), Expect = 0.0
 Identities = 236/453 (52%), Positives = 291/453 (64%), Gaps = 39/453 (8%)

Query: 67  SSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLP 126
             F   SL E D EV   I KE ERQ   LELIASENFTS AVMEA GS LTNKY+EG P
Sbjct: 2   MFFFSDSLEEYDDEVFAAINKELERQQDHLELIASENFTSPAVMEAQGSVLTNKYAEGYP 61

Query: 127 GKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRI 186
           GKRYYGG E++DE+E L  +RA   F  D      NVQP SGS AN  VY A+LKP D I
Sbjct: 62  GKRYYGGCEFVDEVEALAIERAKQLFGCDY----ANVQPHSGSQANGAVYLALLKPGDTI 117

Query: 187 MGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI 246
           +G+ L HGGHL+HG      +VS +  ++ ++ Y +D  TGL+DYD +E+ A   +PKLI
Sbjct: 118 LGMSLSHGGHLTHG-----AKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLI 172

Query: 247 IAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKS 306
           IAG SAYPR+ D+ R R+IAD VGALLM+DMAHI+GLVAA    +PF +  VVTTTTHK+
Sbjct: 173 IAGFSAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKT 232

Query: 307 LRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY 366
           LRGPRGGMI    +     E+   IN+AVFPGLQGGP  H I   AV    A  PEFK Y
Sbjct: 233 LRGPRGGMILTNDE-----EIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTY 287

Query: 367 QNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKN 426
             +V++N +ALA  L E GY LVSGG+DNHL+LVDLRP G+ G   E+ L+ A IT+NKN
Sbjct: 288 AKQVIANAQALAEVLKERGYDLVSGGTDNHLLLVDLRPKGLSGKDAEQALERAGITVNKN 347

Query: 427 SVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQD 485
           +VPGD +S  V  GIRIG+PA TTRGF E EF  IA++I +     L+    +  + L+ 
Sbjct: 348 TVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILD----VLDD---LGNAALE- 399

Query: 486 FMNFVTSPNFSLMNNVADLRGRVEALTTQFPIP 518
                             +R  V+AL ++FPI 
Sbjct: 400 ----------------QRVRKEVKALCSRFPIY 416

Length = 416

>gnl|CDD|184161 PRK13580, PRK13580, serine hydroxymethyltransferase; Provisional

 Score =  368 bits (946), Expect = e-122
 Identities = 180/485 (37%), Positives = 257/485 (52%), Gaps = 64/485 (13%)

Query: 74  LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
           +   +P + E I +E   Q  SL+LIASEN++S AV  A+G+ LT+KY+EG PG R+Y G
Sbjct: 30  ILHVEPRIAEAIRQELADQRSSLKLIASENYSSLAVQLAMGNLLTDKYAEGTPGHRFYAG 89

Query: 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH---------- 183
            + +D +E    + A   F  +       VQP SG+ AN   + AIL             
Sbjct: 90  CQNVDTVEWEAAEHAKELFGAEH----AYVQPHSGADANLVAFWAILAHKVESPALEKLG 145

Query: 184 ---------------------DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 222
                                 R++G+ L  GGHL+HGF     R + +   F    Y +
Sbjct: 146 AKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGF-----RPNISGKMFHQRSYGV 200

Query: 223 DESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISG 282
           D  TGL+DYD +   A  F+P +++AG SAYPR  ++ ++R+IAD VGA+LM+DMAH +G
Sbjct: 201 DPDTGLLDYDEIAALAREFKPLILVAGYSAYPRRVNFAKLREIADEVGAVLMVDMAHFAG 260

Query: 283 LVAASVVA---DPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGL 339
           LVA  V     DP  + D+VTTTTHK+LRGPRGG++  KK      E   A++    P +
Sbjct: 261 LVAGKVFTGDEDPVPHADIVTTTTHKTLRGPRGGLVLAKK------EYADAVDKGC-PLV 313

Query: 340 QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVL 399
            GGP  H +   AV L  A++PEF+ Y  +VV N RALA   ++ G +LV+GG+DNHLVL
Sbjct: 314 LGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKRGARLVTGGTDNHLVL 373

Query: 400 VDLRPMGIDGARVEKILDMASITLNKNSVPGDKS-ALVPGGIRIGSPAMTTRGFSEKEFV 458
           +D+   G+ G + E  L  A I  N+NS+P D + A    GIR+G+PA+TT G    E  
Sbjct: 374 IDVTSFGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMD 433

Query: 459 AIADFIHEGVE-ITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVAD-LRGRVEALTTQFP 516
            +A+ I + +   T         SK      +           VA  +R RV  L  +FP
Sbjct: 434 EVAELIVKVLSNTTPGTTAEGAPSK----AKYELDE------GVAQEVRARVAELLARFP 483

Query: 517 I-PGV 520
           + P +
Sbjct: 484 LYPEI 488

Length = 493

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score =  105 bits (264), Expect = 1e-26
 Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 15/182 (8%)

Query: 140 LETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSH 199
                +++                 P SG+ AN     A+L P D ++     HG     
Sbjct: 1   KLEELEEKLARLLQ--PGNDKAVFVP-SGTGANEAALLALLGPGDEVIVDANGHGSRY-- 55

Query: 200 GFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 258
                   V+      + +P  +D++  G +D  +LE+        LI+   +       
Sbjct: 56  -------WVAAELAGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVL 108

Query: 259 YP--RMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIF 316
            P   +R+IA   G LL++D A   G   A  V  P    DVVT + HK+L G  GG++ 
Sbjct: 109 VPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGGEGGGVVI 168

Query: 317 FK 318
            K
Sbjct: 169 VK 170

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 64/334 (19%), Positives = 117/334 (35%), Gaps = 43/334 (12%)

Query: 126 PGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGV---NVQPLSGS-PANFEVYTAILK 181
            G   Y  +  + EL     + A+A +        V    +   +G+  A   +  A+L 
Sbjct: 27  AGLLGYYPDPGLPEL-----REAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLN 81

Query: 182 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF 241
           P D ++   +P   +  +       R++G  +     P  LDE  G +    L + A   
Sbjct: 82  PGDEVL---VPDPTYPGYEAAA---RLAGAEVV----PVPLDEEGGFLLDLELLEAAKTP 131

Query: 242 RPKLIIAGASAYP--RDFDYPRMRQIADAV---GALLMMDMAHISGLVAASVVADPFKYC 296
           + KL+       P         + ++A+     G L++ D A+ + LV            
Sbjct: 132 KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAY-AELVYDGEPPPALALL 190

Query: 297 D-----VVTTTTHKSLRGP--RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIG 349
           D     +V  +  K+   P  R G +    + +L           + P    GP   +  
Sbjct: 191 DAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELL------ERLKKLLPYTTSGPSTLSQA 244

Query: 350 GLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDG 409
             A  L   +    +  + +      AL   L ELG  +V   S    + +DL   G D 
Sbjct: 245 AAAAALDDGEE-HLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPE-GDDE 302

Query: 410 ARVEKILDMASITLNKNSVPGDKSALVPGGIRIG 443
             +E++L  A + +   S  G+      G +R+ 
Sbjct: 303 EFLERLLLEAGVVVRPGSAFGEGG---EGFVRLS 333

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350

>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 44/233 (18%), Positives = 84/233 (36%), Gaps = 27/233 (11%)

Query: 257 FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMI 315
                + ++A   GAL+++D A  +G +   V       CD +  + HK L GP G G++
Sbjct: 179 NPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQEL---GCDFLAFSGHKWLLGPTGIGVL 235

Query: 316 FFKKD-------PVLGVELESAINNAVFPGLQGGPHN------HTIG--GLAVCLKHAQS 360
           + +K+        + G  +   ++      L   P        +  G  GLA  L +   
Sbjct: 236 YVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLE 295

Query: 361 PEFKVYQNKVVSNCRALASRLVELGYKLVSG-GSDNHLVLVDLRPMGIDGARVEKILDMA 419
              +  +         L   L EL    + G    +   +V     GI    V  +LD  
Sbjct: 296 IGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEK 355

Query: 420 SITL---NKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469
            I +   +  + P  +   V   IR  S  +     +E++   + + + + + 
Sbjct: 356 GIAVRAGHHCAQPLHRLLGVDATIRA-SLHLYN---TEEDVDRLLEALKKALA 404

Length = 405

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 65/352 (18%), Positives = 113/352 (32%), Gaps = 74/352 (21%)

Query: 131 YGGNEYIDELETLCQKRALAAFNLDENKWG----VNVQPLSGSPANFEVYTAILK--PHD 184
           YG  + + EL       ALA F              V   SG+ AN E    +L+  P D
Sbjct: 37  YGPTDGLPELRE-----ALAKFLGRSPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGD 91

Query: 185 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEK--TAILF 241
            I+     +  +    F     R++G     E + Y L   +   +D+D LE        
Sbjct: 92  AILVPAPTYPSY-IRIF-----RLAG----GEVVRYPLYSSNDFHLDFDALEAALKEATE 141

Query: 242 RPKLIIAG------ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLV-----AASVVA 290
             K+++         +    + +  ++  +A     LL++D A+  G V     A +  A
Sbjct: 142 GNKVVLHTSPHNPTGTVATLE-ELEKLLDLAKEHNILLLVDEAYA-GFVFGSLDAVATRA 199

Query: 291 DPFKYCDVVTTTT-HKS--LRGPRGGMIFFKKDPVLGV-ELESAINNAVFPGLQGGPHNH 346
              +  +++   +  K+  L G R G I       LG   + S +           P   
Sbjct: 200 LLAEGPNLLVVGSFSKAFGLAGWRVGYI-------LGNAAVISQLRKLA------RPFYS 246

Query: 347 TIGGLAVCLKHAQSPEFKVYQNK-----VVSNCRALASRLVELGYKLVSGGSDNHLVLVD 401
           +    A        P     + +     +      L   L   G  ++   S     L+ 
Sbjct: 247 STHLQAAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLEAAGLSVL--PSQAGFFLL- 303

Query: 402 LRPMGIDGARVE----KILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTT 449
               G+D          +L+   + +   S  G      PG +RI     T 
Sbjct: 304 ---TGLDPEAALALAQVLLEEVGVYVTPGSSFG-----GPGWLRITVAGGTE 347

Length = 357

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	520
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	100.0
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	100.0
PLN02271	586	serine hydroxymethyltransferase	100.0
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	100.0
PLN03226	475	serine hydroxymethyltransferase; Provisional	100.0
PRK13580	493	serine hydroxymethyltransferase; Provisional	100.0
PTZ00094	452	serine hydroxymethyltransferase; Provisional	100.0
PRK13034	416	serine hydroxymethyltransferase; Reviewed	100.0
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	100.0
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	100.0
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	100.0
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	100.0
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.97
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.97
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.97
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.97
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.96
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.96
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.96
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.96
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.96
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.96
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.95
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.95
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.95
PLN02409	401	serine--glyoxylate aminotransaminase	99.95
PRK02948	381	cysteine desulfurase; Provisional	99.95
PLN00175	413	aminotransferase family protein; Provisional	99.95
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.95
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.95
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.95
PLN02651	364	cysteine desulfurase	99.95
PRK08960	387	hypothetical protein; Provisional	99.94
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.94
PRK07681	399	aspartate aminotransferase; Provisional	99.94
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.94
PRK12414	384	putative aminotransferase; Provisional	99.94
PRK08361	391	aspartate aminotransferase; Provisional	99.94
PRK06108	382	aspartate aminotransferase; Provisional	99.94
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.94
PRK05957	389	aspartate aminotransferase; Provisional	99.94
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.94
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.94
PRK06207	405	aspartate aminotransferase; Provisional	99.94
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.94
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.94
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	99.94
PRK06290	410	aspartate aminotransferase; Provisional	99.94
PRK07682	378	hypothetical protein; Validated	99.94
PRK07337	388	aminotransferase; Validated	99.94
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.94
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.94
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.94
PRK06348	384	aspartate aminotransferase; Provisional	99.94
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.93
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.93
PRK05942	394	aspartate aminotransferase; Provisional	99.93
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.93
PRK07179	407	hypothetical protein; Provisional	99.93
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.93
PRK09082	386	methionine aminotransferase; Validated	99.93
PRK08068	389	transaminase; Reviewed	99.93
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.93
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.93
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.93
PRK06225	380	aspartate aminotransferase; Provisional	99.93
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.93
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.93
PRK07683	387	aminotransferase A; Validated	99.93
PRK07550	386	hypothetical protein; Provisional	99.93
PRK14012	404	cysteine desulfurase; Provisional	99.93
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.93
PRK07324	373	transaminase; Validated	99.93
PRK08912	387	hypothetical protein; Provisional	99.93
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.93
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.93
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.93
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.93
PRK08636	403	aspartate aminotransferase; Provisional	99.93
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.92
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.92
PLN02656	409	tyrosine transaminase	99.92
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.92
PRK08363	398	alanine aminotransferase; Validated	99.92
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.92
PRK05764	393	aspartate aminotransferase; Provisional	99.92
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.92
PLN02187	462	rooty/superroot1	99.92
PRK07777	387	aminotransferase; Validated	99.92
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.92
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.92
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.92
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.92
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.92
PRK06855	433	aminotransferase; Validated	99.92
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.92
PRK09148	405	aminotransferase; Validated	99.92
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.92
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.92
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.91
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.91
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.91
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.91
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.91
PLN02721	353	threonine aldolase	99.91
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.91
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.91
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.91
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.91
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.91
PRK08175	395	aminotransferase; Validated	99.91
PRK09105	370	putative aminotransferase; Provisional	99.91
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.91
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.91
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.91
PRK09265	404	aminotransferase AlaT; Validated	99.91
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.91
PTZ00377	481	alanine aminotransferase; Provisional	99.91
PRK06107	402	aspartate aminotransferase; Provisional	99.91
PTZ00433	412	tyrosine aminotransferase; Provisional	99.91
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.91
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.9
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.9
PLN02483	489	serine palmitoyltransferase	99.9
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.9
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.9
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.9
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.9
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.9
PRK03321	352	putative aminotransferase; Provisional	99.9
PRK09275	527	aspartate aminotransferase; Provisional	99.9
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.9
PLN02231	534	alanine transaminase	99.9
PRK13237	460	tyrosine phenol-lyase; Provisional	99.9
PLN02724	805	Molybdenum cofactor sulfurase	99.9
PRK13392	410	5-aminolevulinate synthase; Provisional	99.9
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.9
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.9
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.89
PRK10534	333	L-threonine aldolase; Provisional	99.89
PRK09064	407	5-aminolevulinate synthase; Validated	99.89
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.89
PLN02822	481	serine palmitoyltransferase	99.89
PRK07568	397	aspartate aminotransferase; Provisional	99.89
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.89
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.89
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.89
PRK02769	380	histidine decarboxylase; Provisional	99.89
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.89
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.89
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.89
PLN02672	1082	methionine S-methyltransferase	99.89
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.89
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	99.89
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.88
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.88
PRK05839	374	hypothetical protein; Provisional	99.88
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.88
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.88
PRK07908	349	hypothetical protein; Provisional	99.88
PRK06836	394	aspartate aminotransferase; Provisional	99.88
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.88
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.88
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.88
PRK13393	406	5-aminolevulinate synthase; Provisional	99.88
PRK03080	378	phosphoserine aminotransferase; Provisional	99.87
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.87
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.87
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.87
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.87
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.87
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.87
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.87
PLN02397	423	aspartate transaminase	99.86
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.86
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.86
PRK05968	389	hypothetical protein; Provisional	99.86
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.86
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.86
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.86
PRK06767	386	methionine gamma-lyase; Provisional	99.86
PTZ00376	404	aspartate aminotransferase; Provisional	99.85
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.85
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.85
PRK07811	388	cystathionine gamma-synthase; Provisional	99.85
PLN02955	476	8-amino-7-oxononanoate synthase	99.85
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.85
PLN03032	374	serine decarboxylase; Provisional	99.85
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.85
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.85
PRK08861	388	cystathionine gamma-synthase; Provisional	99.85
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.85
PRK04311	464	selenocysteine synthase; Provisional	99.85
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.85
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.85
PRK06234	400	methionine gamma-lyase; Provisional	99.84
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.84
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.84
PRK08045	386	cystathionine gamma-synthase; Provisional	99.84
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.84
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.84
PLN02242	418	methionine gamma-lyase	99.84
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.83
PRK07503	403	methionine gamma-lyase; Provisional	99.83
PRK08776	405	cystathionine gamma-synthase; Provisional	99.83
PLN02368	407	alanine transaminase	99.83
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.83
PRK15029	755	arginine decarboxylase; Provisional	99.83
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.82
PRK08064	390	cystathionine beta-lyase; Provisional	99.82
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.82
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.82
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.82
PRK08574	385	cystathionine gamma-synthase; Provisional	99.82
PRK05367	954	glycine dehydrogenase; Provisional	99.82
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.82
PRK12566	954	glycine dehydrogenase; Provisional	99.82
PRK07050	394	cystathionine beta-lyase; Provisional	99.82
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.82
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.82
PRK08249	398	cystathionine gamma-synthase; Provisional	99.82
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.81
PRK08114	395	cystathionine beta-lyase; Provisional	99.81
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.81
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.81
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.81
PRK08354	311	putative aminotransferase; Provisional	99.81
PRK08637	388	hypothetical protein; Provisional	99.81
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.8
PRK09028	394	cystathionine beta-lyase; Provisional	99.8
PLN02509	464	cystathionine beta-lyase	99.8
PRK06460	376	hypothetical protein; Provisional	99.8
PRK05939	397	hypothetical protein; Provisional	99.8
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.79
PRK07671	377	cystathionine beta-lyase; Provisional	99.79
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.79
PRK06434	384	cystathionine gamma-lyase; Validated	99.79
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.79
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.79
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.78
PRK13578	720	ornithine decarboxylase; Provisional	99.78
PRK05967	395	cystathionine beta-lyase; Provisional	99.78
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.77
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.77
PRK07582	366	cystathionine gamma-lyase; Validated	99.77
PLN02880	490	tyrosine decarboxylase	99.77
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.77
PLN02452	365	phosphoserine transaminase	99.77
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.77
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.77
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.77
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.77
PRK15400	714	lysine decarboxylase CadA; Provisional	99.77
PRK07049	427	methionine gamma-lyase; Validated	99.76
PRK07505	402	hypothetical protein; Provisional	99.76
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.76
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.75
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.75
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.74
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.74
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.73
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.73
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.73
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.73
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.72
PLN02590	539	probable tyrosine decarboxylase	99.71
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.71
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.71
PLN02263	470	serine decarboxylase	99.71
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.7
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	99.7
PRK02627	396	acetylornithine aminotransferase; Provisional	99.7
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	99.7
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.69
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.69
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.69
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.68
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.68
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.67
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.67
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.66
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.66
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.66
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.65
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.64
PRK12462	364	phosphoserine aminotransferase; Provisional	99.61
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.61
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.6
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.59
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.59
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.59
PRK04260	375	acetylornithine aminotransferase; Provisional	99.59
PRK05367	954	glycine dehydrogenase; Provisional	99.58
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	99.57
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	99.57
PLN02624	474	ornithine-delta-aminotransferase	99.53
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.52
PLN00144	382	acetylornithine transaminase	99.51
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	99.5
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.48
KOG0634	472	consensus Aromatic amino acid aminotransferase and	99.45
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.44
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.43
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.41
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.41
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	99.4
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.4
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.39
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.39
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	99.38
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.38
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.36
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.35
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.35
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	99.35
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.35
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.33
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.32
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.31
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.31
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.31
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.31
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	99.3
PRK12403	460	putative aminotransferase; Provisional	99.3
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.3
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.29
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.28
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.27
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	99.27
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.26
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	99.26
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.26
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.26
PRK07046	453	aminotransferase; Validated	99.25
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.25
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.25
PRK06105	460	aminotransferase; Provisional	99.25
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.24
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.24
PRK06541	460	hypothetical protein; Provisional	99.23
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.23
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	99.23
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	99.21
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.19
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.19
PRK06062	451	hypothetical protein; Provisional	99.18
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.15
PRK07678	451	aminotransferase; Validated	99.14
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.12
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.11
COG4100	416	Cystathionine beta-lyase family protein involved i	99.11
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.1
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.09
PRK05965	459	hypothetical protein; Provisional	99.09
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	99.08
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.07
PRK07481	449	hypothetical protein; Provisional	99.07
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.03
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.03
PRK06149	972	hypothetical protein; Provisional	99.03
PRK07482	461	hypothetical protein; Provisional	99.01
PRK07480	456	putative aminotransferase; Validated	99.0
PRK07483	443	hypothetical protein; Provisional	99.0
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	98.99
PRK06148	1013	hypothetical protein; Provisional	98.98
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	98.98
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	98.94
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	98.94
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	98.93
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	98.92
PRK06917	447	hypothetical protein; Provisional	98.92
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	98.9
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	98.9
PRK07036	466	hypothetical protein; Provisional	98.88
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	98.85
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	98.84
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	98.82
KOG0629	510	consensus Glutamate decarboxylase and related prot	98.81
PRK12566	954	glycine dehydrogenase; Provisional	98.75
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	98.74
PRK08297	443	L-lysine aminotransferase; Provisional	98.73
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	98.72
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	98.71
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	98.66
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	98.65
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	98.6
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	98.35
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	98.27
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	98.26
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	98.24
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	97.72
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	97.54
KOG2790	370	consensus Phosphoserine aminotransferase [Coenzyme	97.27
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	97.05
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	95.75

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=7.9e-117  Score=854.04  Aligned_cols=452  Identities=69%  Similarity=1.120  Sum_probs=437.1

Q ss_pred             chhhhhccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHH
Q 010008           68 SFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKR  147 (520)
Q Consensus        68 ~~~~~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~  147 (520)
                      .+++..|.+.|||++++|++|+.||+.+|+|||||||+|.+|+||++|+|+|||+|||||.|||+|++++|++|.+|++|
T Consensus        15 ~~~~~~l~~~DPev~~ii~~Ek~RQ~~gieLIaSENFts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~R   94 (477)
T KOG2467|consen   15 KLGNTPLEEVDPEVHDIIEKEKERQKRGIELIASENFTSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQKR   94 (477)
T ss_pred             hhhcCchhhcChHHHHHHHHHHHhhhcceeEeecccchHHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHHH
Confidence            56678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCC
Q 010008          148 ALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG  227 (520)
Q Consensus       148 ~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~  227 (520)
                      +.++|+++++.|+|||||.|||.||+++++|+++|||+||.+|+++|||+||||++..+++++.+.+|+..+|.+|+.+|
T Consensus        95 ALeaF~ldp~kWGVNVQp~SGSPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG  174 (477)
T KOG2467|consen   95 ALEAFGLDPEKWGVNVQPYSGSPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTG  174 (477)
T ss_pred             HHHHhCCCHHHCceeeccCCCCchhhHHHhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCccc
Q 010008          228 LVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL  307 (520)
Q Consensus       228 ~iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l  307 (520)
                      .||||.||+.+..+|||+||++.|+|++.+|++++++||+++|++|++|+||++|+++.++.++||+|||||++||||+|
T Consensus       175 ~IDYD~Le~~A~~frPk~iiaG~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~DiVTTTTHKsL  254 (477)
T KOG2467|consen  175 YIDYDKLEKTATLFRPKLIIAGTSAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYCDIVTTTTHKSL  254 (477)
T ss_pred             ceehHHHHHHHHhcCCcEEEeccccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccccceeeccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEeeCCC---------cchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 010008          308 RGPRGGMIFFKKDP---------VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA  378 (520)
Q Consensus       308 ~GprgG~I~~~~~~---------~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~  378 (520)
                      +|||||+|+++++.         ...|++.++|+.++||++|||||+|.|+|+|+||+++.+++|++|++|+++|++.|+
T Consensus       255 RGPRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala  334 (477)
T KOG2467|consen  255 RGPRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALA  334 (477)
T ss_pred             cCCcceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999863         247899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHH
Q 010008          379 SRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFV  458 (520)
Q Consensus       379 ~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~  458 (520)
                      ++|.++|++++++|||||+++||+++.|++|..+++.|+.++|.+|+|++|||.+++.|+|||||+|++|+||+.|+||+
T Consensus       335 ~~l~~~Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsRG~~e~df~  414 (477)
T KOG2467|consen  335 SALISRGYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTPAMTSRGFGEEDFE  414 (477)
T ss_pred             HHHHHcCceEecCCccceEEEEeccccCCchHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccchhhcccCccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccchhhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCCC
Q 010008          459 AIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV  520 (520)
Q Consensus       459 ~la~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~~~  520 (520)
                      +++++|+++++++.++|...++++++||++.+.++.. ...++.+||++|++|+.+||+|+|
T Consensus       415 ~v~~fi~~av~i~~~~~~~~~~~~lkdf~~~~~~~~~-~~~~v~~Lr~~Ve~fa~~fp~pg~  475 (477)
T KOG2467|consen  415 KVADFIDRAVKIALEIQKEAGGKKLKDFKKFLSENKV-MSEEVAELRKRVEEFAGQFPMPGF  475 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccchHHHHHHHhccCch-hHHHHHHHHHHHHHHHhcCCCCCC
Confidence            9999999999999999988877999999999876441 124789999999999999999986

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-106  Score=797.67  Aligned_cols=408  Identities=56%  Similarity=0.858  Sum_probs=395.3

Q ss_pred             hhccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 010008           72 YSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA  151 (520)
Q Consensus        72 ~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~l  151 (520)
                      ..+...||++++++.+|..||++.|+||||||++|++|++|++|.|+|||+|||||+|||+||+++|++|.+|++|++++
T Consensus         5 ~~l~~~d~~i~~~i~~e~~rq~~~ieLIASEN~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~L   84 (413)
T COG0112           5 ASLADYDPEIFEAIQQELERQREHIELIASENFTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKL   84 (413)
T ss_pred             hhHHhcCHHHHHHHHHHHHHHhhceeeeeccccCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCH
Q 010008          152 FNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY  231 (520)
Q Consensus       152 fg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~  231 (520)
                      ||+++    +||||+||++||++++.||++|||+||.+++.+|||+|||.     +++++|.+|+.++|++|++++.|||
T Consensus        85 Fga~~----anVQPhSGs~AN~av~~All~pGDtimgm~l~~GGHltHg~-----~v~~sG~~~~~v~Y~vd~et~~IDy  155 (413)
T COG0112          85 FGAEY----ANVQPHSGSQANQAVYLALLQPGDTIMGLDLSHGGHLTHGS-----PVNFSGKLFNVVSYGVDPETGLIDY  155 (413)
T ss_pred             hCCCc----cccCCCCchHHHHHHHHHHcCCCCeEecccCCCCCcccCCC-----CCCccceeEEeEecccccccCccCH
Confidence            99997    59999999999999999999999999999999999999995     7899999999999999999999999


Q ss_pred             HHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCC
Q 010008          232 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPR  311 (520)
Q Consensus       232 d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gpr  311 (520)
                      |++++++.++|||+||+|.|.|++.+|++++++||+++|++|++|+||++||++.|++++|+++||||++||||||+|||
T Consensus       156 D~~~k~a~e~kPK~ii~G~SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~AdvVTtTTHKTlrGPr  235 (413)
T COG0112         156 DEVEKLAKEVKPKLIIAGGSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPHADVVTTTTHKTLRGPR  235 (413)
T ss_pred             HHHHHHHHHhCCCEEEECccccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCccceEeCCcccCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecC
Q 010008          312 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG  391 (520)
Q Consensus       312 gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~  391 (520)
                      ||+|+++++     ++.++|++++||+.||+|++|.|||+++||+++++++|++|++|+++|++.|++.|.+.|++++++
T Consensus       236 GG~Il~~~e-----el~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~~vvsG  310 (413)
T COG0112         236 GGIILTNDE-----ELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGFKVVSG  310 (413)
T ss_pred             ceEEEeccH-----HHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCCeEecC
Confidence            999999985     899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          392 GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       392 gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      |||+|++++|+++.+++|+.++..|+++||.+|+|.+|+|+ +++.+|||||||+++|||||.++||++++++|.+++..
T Consensus       311 gTdnHl~lVDl~~~~~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~  390 (413)
T COG0112         311 GTDNHLVLVDLRSKGLTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDG  390 (413)
T ss_pred             CccceEEEEEcccCCCCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhc
Confidence            99999999999988899999999999999999999999997 89999999999999999999999999999999999985


Q ss_pred             HHHHHHhhcccchhhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCC
Q 010008          471 TLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG  519 (520)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~~  519 (520)
                      .                     +.     ..+++|++|.+||++||++.
T Consensus       391 ~---------------------~~-----~~~~vk~~V~~l~~~fp~y~  413 (413)
T COG0112         391 L---------------------KD-----VPAEVKEEVAELCRRFPLYK  413 (413)
T ss_pred             c---------------------ch-----hHHHHHHHHHHHHHhCCCCC
Confidence            3                     11     57899999999999999974

>PLN02271 serine hydroxymethyltransferase

Probab=100.00  E-value=8.8e-99  Score=785.82  Aligned_cols=446  Identities=56%  Similarity=0.979  Sum_probs=419.9

Q ss_pred             hhhhhccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHH
Q 010008           69 FVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA  148 (520)
Q Consensus        69 ~~~~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~  148 (520)
                      |.+..|.+.||+++++|.+|.+||+++|+||||||++|+.|+++++|+|+|||+|||||+|||+||+++|++|.+|++|+
T Consensus       124 ~~~~~l~~~Dpei~~li~~E~~rQ~~~l~LIASEN~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era  203 (586)
T PLN02271        124 WGNQPLPEADPDIHELMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERA  203 (586)
T ss_pred             HHhccHhhhCHHHHHHHHHHHHHHhcCeeeccccccCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHH
Confidence            44556889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccc-ccccccccceEEEEEcccCCCCC
Q 010008          149 LAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTP-KRRVSGTSIYFESMPYRLDESTG  227 (520)
Q Consensus       149 ~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~-~~~v~~~g~~~~~v~~~~d~~~~  227 (520)
                      +++||+++++|++|||++||+.||++++.+|++|||+||+++++||||++|++++. .+.+++.|.+|+.++|++|++++
T Consensus       204 ~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g  283 (586)
T PLN02271        204 LAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTG  283 (586)
T ss_pred             HHHhCCcccccccceeeccHHHHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccC
Confidence            99999999899999999999999999999999999999999999999999998642 24678899999999999988889


Q ss_pred             CCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCccc
Q 010008          228 LVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL  307 (520)
Q Consensus       228 ~iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l  307 (520)
                      .||+|++++.+..++||+|+++.+.|++.+|+++|++||+++|++|++|+||++|+++.+.+++|+.+||++++|+||||
T Consensus       284 ~IDyd~lek~a~~~rPKLII~g~Saypr~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtL  363 (586)
T PLN02271        284 YIDYDKLEEKALDFRPKILICGGSSYPREWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSL  363 (586)
T ss_pred             ccCHHHHHHHhhhcCCeEEEECchhccCcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcccC
Confidence            99999999977777999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEeeCCC--------------cchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010008          308 RGPRGGMIFFKKDP--------------VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN  373 (520)
Q Consensus       308 ~GprgG~I~~~~~~--------------~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~n  373 (520)
                      +|||||+|+++++.              ...+++.++|++++||++||+|++|.|||+++||+++..++|++|++|+++|
T Consensus       364 rGPrGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~N  443 (586)
T PLN02271        364 RGPRGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKN  443 (586)
T ss_pred             CCCCceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            99999999998641              1235688999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCC
Q 010008          374 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFS  453 (520)
Q Consensus       374 a~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~  453 (520)
                      ++.|++.|.+.|++++++|||+|+++||+++.+++|..+++.|+++||.+|+|.+|+|.+++.++||||||+++|+|||.
T Consensus       444 AkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~  523 (586)
T PLN02271        444 AQALASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCL  523 (586)
T ss_pred             HHHHHHHHHHCCCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCCCCCCCCCCcccccCHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCCC
Q 010008          454 EKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV  520 (520)
Q Consensus       454 ~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~~~  520 (520)
                      |+||++++++|.++++...++|++. ++++++|++.+.+++     .+.+||++|.+||++||+|+|
T Consensus       524 e~d~~~iA~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~i~~l~~~V~~~~~~fp~p~~  584 (586)
T PLN02271        524 ESDFETIADFLLRAAQIASAVQREH-GKLQKEFLKGLQNNK-----DIVELRNRVEAFASQFAMPGF  584 (586)
T ss_pred             cHHHHHHHHHHHHHHhhhhhhhhhc-chhhhhhhhccCCHH-----HHHHHHHHHHHHHHhCCCCCC
Confidence            9999999999999999888887765 778899988776543     789999999999999999975

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=100.00  E-value=5.3e-90  Score=705.29  Aligned_cols=391  Identities=58%  Similarity=0.961  Sum_probs=333.0

Q ss_pred             ccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC
Q 010008           74 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN  153 (520)
Q Consensus        74 l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg  153 (520)
                      |++.||++++++++|..||+++|+||||||++||.|+++++|.|+|+|+|||||+|||+||+++|++|.+|+++++++||
T Consensus         1 l~~~d~ei~~li~~e~~rq~~~l~LiaSEN~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~   80 (399)
T PF00464_consen    1 LKEFDPEIYELIEKEEERQRSTLNLIASENYMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFG   80 (399)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHSEE-CTT-----HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT
T ss_pred             CcccCHHHHHHHHHHHHHHhcCccccCcccccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHH
Q 010008          154 LDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDM  233 (520)
Q Consensus       154 ~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~  233 (520)
                      +++++|.+|||+.||+.||++++.||++|||+||.+++.+|||+|||+....+++...|.+|+.++|++|++++.||+|+
T Consensus        81 ~~~~~w~anvqp~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~  160 (399)
T PF00464_consen   81 AEPKEWYANVQPHSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDE  160 (399)
T ss_dssp             -STTTEEEE---SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHH
T ss_pred             CCcccceEEeecCCchHHHHHHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHH
Confidence            99999999999999999999999999999999999999999999999876656677789999999999998899999999


Q ss_pred             HHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCce
Q 010008          234 LEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG  313 (520)
Q Consensus       234 le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~GprgG  313 (520)
                      +++++++++||+||++.|+||+.+|+++|++||+++|++|++|++|.+|+|+.|++++||++||||++||||||+|||||
T Consensus       161 l~~~a~~~kPklIi~G~S~y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~ADvvt~sThKtl~GPrgg  240 (399)
T PF00464_consen  161 LEKLAKEHKPKLIICGASSYPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPYADVVTGSTHKTLRGPRGG  240 (399)
T ss_dssp             HHHHHHHH--SEEEEE-SSTSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCTSSEEEEESSGGG-SSS-E
T ss_pred             HHHHHhhcCCCEEEECchhccCccCHHHHHHHHHhcCcEEEecccccccceehheecCccccceEEEeeccccccccCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeCCC--------cchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCC
Q 010008          314 MIFFKKDP--------VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG  385 (520)
Q Consensus       314 ~I~~~~~~--------~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G  385 (520)
                      +|+++++.        ...+++.++|++++||+.||+|++|.+||++++|+++++++|++|++|+++|+++|++.|.+.|
T Consensus       241 iI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G  320 (399)
T PF00464_consen  241 IILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQERG  320 (399)
T ss_dssp             EEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            99999220        0123899999999999999999999999999999999888999999999999999999999999


Q ss_pred             CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHH
Q 010008          386 YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  464 (520)
Q Consensus       386 ~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i  464 (520)
                      +++++++|++|++++|+++.++++.+++++|+++||.+|+|.+|+|.+++.++||||||+++|+||++++||+++|++|
T Consensus       321 ~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~I  399 (399)
T PF00464_consen  321 FKVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLRLGTPALTRRGMKEEDMKEIAELI  399 (399)
T ss_dssp             -EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEEEESHHHHHTT--HHHHHHHHHHH
T ss_pred             cEEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeecccccCCCCCCCCCCEEEECCHHHHhCCCCHHHHHHHHhhC
Confidence            9999999999999999998899999999999999999999999999888889999999999999999999999999987

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=100.00  E-value=5.7e-78  Score=639.78  Aligned_cols=449  Identities=71%  Similarity=1.156  Sum_probs=408.8

Q ss_pred             hhhhhccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHH
Q 010008           69 FVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA  148 (520)
Q Consensus        69 ~~~~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~  148 (520)
                      ++...|.+.||+++++|.+|..||+++|+||||||++|+.|++++++.++++|++||||+|||+|++++|++|++|++++
T Consensus        10 ~~~~~~~~~d~~~~~~i~~e~~~q~~~l~liasen~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~   89 (475)
T PLN03226         10 WGNAPLEEVDPEIADIIEKEKRRQWKGLELIASENFTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRA   89 (475)
T ss_pred             cchhhhhhcCHHHHHHHHHHHHHHHcCeeEecCCccCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHH
Confidence            45566888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCC
Q 010008          149 LAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL  228 (520)
Q Consensus       149 ~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~  228 (520)
                      +++|+.+.+.|.+|||++||+.||.+++.+|++|||+||+++.++|||++|++......++..+.++++++|+++++++.
T Consensus        90 ~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~  169 (475)
T PLN03226         90 LEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGL  169 (475)
T ss_pred             HHHhCCCcceeEEecCcCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCC
Confidence            99999999888899999999999999999999999999999999999999997654445566777788889988888899


Q ss_pred             CCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccC
Q 010008          229 VDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLR  308 (520)
Q Consensus       229 iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~  308 (520)
                      +|+++|++++..++||+|+++.++|+...|+++|+++|+++|++|++|+||++|++..+..++|++++|++++|+||||+
T Consensus       170 iD~d~Le~~l~~~~pklIv~~~S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~~t~hK~L~  249 (475)
T PLN03226        170 IDYDKLEKKAMLFRPKLIIAGASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLR  249 (475)
T ss_pred             cCHHHHHHHHhhcCCeEEEEecCcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCCCCeEEEecCccccc
Confidence            99999999998778999999888899999999999999999999999999999999988888888899999999999999


Q ss_pred             CCCceEEEeeCCCc--------chhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 010008          309 GPRGGMIFFKKDPV--------LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASR  380 (520)
Q Consensus       309 GprgG~I~~~~~~~--------~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~  380 (520)
                      ||+||+|+++++..        .+.++.+.++...||+.+|+|+++.++|+++||+++..+++++|.+++.+|+++|++.
T Consensus       250 GP~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~  329 (475)
T PLN03226        250 GPRGGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANR  329 (475)
T ss_pred             CCCceEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence            99999999987421        1124556788888999999999999999999999998888999999999999999999


Q ss_pred             HHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHH
Q 010008          381 LVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAI  460 (520)
Q Consensus       381 L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~l  460 (520)
                      |.+.|++++++++++|++++|+++.++++.++.+.|+++||.+|++.+|++.++..+++||+||+++|+||++++||+++
T Consensus       330 L~~~G~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~i  409 (475)
T PLN03226        330 LMSKGYKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKV  409 (475)
T ss_pred             HHhCCCEEEcCCCCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHHH
Confidence            99999999998889999999998889999999999999999999999999888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCCC
Q 010008          461 ADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV  520 (520)
Q Consensus       461 a~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~~~  520 (520)
                      +++|.++++.....+++. ++++++|...++.+..  ...++++|++|.+||++||+|++
T Consensus       410 a~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~fp~~~~  466 (475)
T PLN03226        410 AEFLHRAVTIALKIQKEH-GKKLKDFKKGLESNDF--SKDIEALRAEVEEFATSFPMPGF  466 (475)
T ss_pred             HHHHHHHHHHhhhhhhhc-ccchhhhhhhcccccc--HHHHHHHHHHHHHHHHhCCCCCC
Confidence            999999999887777665 6888898766543310  13689999999999999999874

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=100.00  E-value=4.5e-78  Score=629.56  Aligned_cols=424  Identities=42%  Similarity=0.707  Sum_probs=383.9

Q ss_pred             hhccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 010008           72 YSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA  151 (520)
Q Consensus        72 ~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~l  151 (520)
                      ..|.+.||+++++|++|.+||+++|+||||||++|+.|++++++.|+|||+|||||+|||+||+++|++|.+|+++++++
T Consensus        28 ~~l~~~d~~~~~~~~~e~~rq~~~l~LiasEN~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~l  107 (493)
T PRK13580         28 DVILHVEPRIAEAIRQELADQRSSLKLIASENYSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKEL  107 (493)
T ss_pred             HHHHhhCHHHHHHHHHHHHHHhcCceEecccccCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCceeeecCChHHHHHHHHHhhCCC-------------------------------CCEEEEcCCCCCcccccc
Q 010008          152 FNLDENKWGVNVQPLSGSPANFEVYTAILKP-------------------------------HDRIMGLDLPHGGHLSHG  200 (520)
Q Consensus       152 fg~~~~~~~~~V~~~sGs~A~~~~l~all~p-------------------------------GD~Vl~~~~~~~ghls~g  200 (520)
                      ||+++    +||||+||+.||+++++++++|                               ||+||.+++.+|||++||
T Consensus       108 f~a~~----anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg  183 (493)
T PRK13580        108 FGAEH----AYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHG  183 (493)
T ss_pred             hCCCc----ccccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecC
Confidence            99998    5999999999999999999987                               899999999999999999


Q ss_pred             ccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhh
Q 010008          201 FMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHI  280 (520)
Q Consensus       201 ~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~  280 (520)
                      +     ..++.|.+++.++|+++++++.+|++++++++++.+|++|+++.|++++..|+++|++||+++|+++++|+||+
T Consensus       184 ~-----~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~~plvii~g~S~~~~~~dl~~i~eia~~~gA~L~VD~AH~  258 (493)
T PRK13580        184 F-----RPNISGKMFHQRSYGVDPDTGLLDYDEIAALAREFKPLILVAGYSAYPRRVNFAKLREIADEVGAVLMVDMAHF  258 (493)
T ss_pred             c-----ccchhhheeeeEecccCcccCccCHHHHHHHHhhcCCEEEEeCccccCCCcCHHHHHHHHHHcCCEEEEECchh
Confidence            6     56788999999999999878999999999999997788888889999999999999999999999999999999


Q ss_pred             cccccccccC---CCCCcccEEEeccCcccCCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHH
Q 010008          281 SGLVAASVVA---DPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH  357 (520)
Q Consensus       281 ~gli~~~~~~---~p~~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~  357 (520)
                      +|++..+..+   +|+.++||+++|+||||+||+||+|++++      ++.+.++++ .|+++|+++.+.++|+++++.+
T Consensus       259 ~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~GG~I~~~~------~l~~~L~~a-~P~i~gg~l~p~iAA~avAl~e  331 (493)
T PRK13580        259 AGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPRGGLVLAKK------EYADAVDKG-CPLVLGGPLPHVMAAKAVALAE  331 (493)
T ss_pred             hceeccccchhhcCCCCCCcEEEeCChhhccCCCeEEEEecH------HHHHHHhhC-CCcccCCCccHHHHHHHHHHHH
Confidence            9999876654   56678999999999999999999999998      788888776 4899999999999999999999


Q ss_pred             hcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCC
Q 010008          358 AQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALV  436 (520)
Q Consensus       358 ~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~  436 (520)
                      +.+++|++|++++++|+++|++.|.+.|++++.++|++|++++++.+.+.++..+.+.|+++||.|+++.+|+++ +++.
T Consensus       332 ~~~~ef~~y~~~l~~Na~~La~~L~~~G~~vv~ggTdshIV~V~lg~~~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~  411 (493)
T PRK13580        332 ARTPEFQKYAQQVVDNARALAEGFLKRGARLVTGGTDNHLVLIDVTSFGLTGRQAESALLDAGIVTNRNSIPSDPNGAWY  411 (493)
T ss_pred             HhCccHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCCCEEEEEeCCHHHHHHHHHHHHHHCCeEEccccCCCCCCCCCC
Confidence            988888999999999999999999999999988778999999999876666678889999999999999999986 6677


Q ss_pred             CCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcccCCCCccchHHHHHHHHHHHHHHhhCC
Q 010008          437 PGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFP  516 (520)
Q Consensus       437 ~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp  516 (520)
                      +++||||++++|+||++++||++++++|.++++.....+.. .|+++++  +...+ +    ..++++|++|.+||++||
T Consensus       412 ~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~~~~~~~~-~~~~~~~--~~~~~-~----~~~~~~~~~v~~~~~~~p  483 (493)
T PRK13580        412 TSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSNTTPGTTA-EGAPSKA--KYELD-E----GVAQEVRARVAELLARFP  483 (493)
T ss_pred             CceEEeccchhhhcCCCHHHHHHHHHHHHHHHHhhhhcccc-ccccccc--cccCC-H----HHHHHHHHHHHHHHHhCC
Confidence            89999999999999999999999999999998765332222 2555555  22222 2    368899999999999999


Q ss_pred             C-CC
Q 010008          517 I-PG  519 (520)
Q Consensus       517 ~-~~  519 (520)
                      + |+
T Consensus       484 ~~~~  487 (493)
T PRK13580        484 LYPE  487 (493)
T ss_pred             CCCc
Confidence            8 54

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=100.00  E-value=1.9e-64  Score=537.54  Aligned_cols=442  Identities=64%  Similarity=1.071  Sum_probs=385.9

Q ss_pred             hhhhccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHH
Q 010008           70 VDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL  149 (520)
Q Consensus        70 ~~~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~  149 (520)
                      ++..|...||++++++.+|.++|+++|+|+||||++||.|++++.+.++++|++|+|+.+|+.|+++.+.+|+.++++++
T Consensus        11 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~l~~sen~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a   90 (452)
T PTZ00094         11 LNQSLKEADPELYELIEKEKERQIEGLELIASENFTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRAL   90 (452)
T ss_pred             hhhhHhhhCHHHHHHHHHHHHHHHcCeeEecccccCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHH
Confidence            45558888999999999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             HHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCC
Q 010008          150 AAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV  229 (520)
Q Consensus       150 ~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~i  229 (520)
                      ++||+++++|.++++++||++||.+++.++++|||+|++.+.+|++|++++.......+.+.+..+++..|++++ ++.+
T Consensus        91 ~lf~a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~-~g~i  169 (452)
T PTZ00094         91 EAFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNE-KGLI  169 (452)
T ss_pred             HHhCCCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCC-CCCc
Confidence            999999888878999999999999999999999999999999999999987543222344556667778888874 4899


Q ss_pred             CHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCC
Q 010008          230 DYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRG  309 (520)
Q Consensus       230 D~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~G  309 (520)
                      |++++++++++.+|++|+++.+.++...|+++|.++|+++|+++++|++|++|++..+..+.++.++|++++|+||||+|
T Consensus       170 d~~~L~~~l~~~~~~lvi~~~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~hK~l~G  249 (452)
T PTZ00094        170 DYDKLEELAKAFRPKLIIAGASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRG  249 (452)
T ss_pred             CHHHHHHHHHHhCCCEEEEeCCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCCCCcEEEcCCccCCCC
Confidence            99999999977689999887778888999999999999999999999999999998887777777999999999999999


Q ss_pred             CCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEe
Q 010008          310 PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLV  389 (520)
Q Consensus       310 prgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~  389 (520)
                      |+||+++++++..  ..+...++...+|.++|+++.+.++++++|++++...+++++.+++.+++++|.+.|.+.|+++.
T Consensus       250 P~Gg~l~~~~~~~--~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~g~~v~  327 (452)
T PTZ00094        250 PRSGLIFYRKKVK--PDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKRGYDLV  327 (452)
T ss_pred             CCceEEEEecccc--hHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhCCcEEe
Confidence            9999999977311  12445666678888899999999999999999987777889999999999999999988899998


Q ss_pred             cCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          390 SGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       390 ~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      .+++++|..++++...++++..+...|+++||.++++.+|++..+..+++||+|++.+|++|++++||++++++|.++++
T Consensus       328 ~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~  407 (452)
T PTZ00094        328 TGGTDNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVK  407 (452)
T ss_pred             cCCCCCceEeecCCcCCCCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            76556787788887778888999999999999999888888765666899999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccchhhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCCC
Q 010008          470 ITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV  520 (520)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~~~  520 (520)
                      ....++++. +++..+|.+...++     .++.++|++|.+||++||+|++
T Consensus       408 ~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~  452 (452)
T PTZ00094        408 LAQEIQKQV-GKKLVDFKKALEKN-----PELQKLRQEVVEFASQFPFPGI  452 (452)
T ss_pred             HHhhhhhhc-ccchhhhhhhcccH-----HHHHHHHHHHHHHHHhCCCCCC
Confidence            877666555 55545554333332     3789999999999999999984

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=100.00  E-value=1.4e-55  Score=464.25  Aligned_cols=412  Identities=57%  Similarity=0.872  Sum_probs=357.8

Q ss_pred             hhhhhccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHH
Q 010008           69 FVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA  148 (520)
Q Consensus        69 ~~~~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~  148 (520)
                      |+.+.|++.|||++++|++|..+|.+.|+|++|||+++|.|++++.+.+.++|..|++|.|+++|++..+++|+++++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sen~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~l   83 (416)
T PRK13034          4 FFSDSLEEYDDEVFAAINKELERQQDHLELIASENFTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERA   83 (416)
T ss_pred             hhhhhHhhhCHHHHHHHHHHHHHHhcCeeecccccCCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999899999


Q ss_pred             HHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCC
Q 010008          149 LAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL  228 (520)
Q Consensus       149 ~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~  228 (520)
                      +++||.+.    +.|.+.||+.||.+++.++++|||+|++.+..|++++.+|.     ...+.+.+++.+.+++++.++.
T Consensus        84 a~l~g~~~----alv~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~  154 (416)
T PRK13034         84 KQLFGCDY----ANVQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTHGA-----KVSLSGKWYNAVQYGVDRLTGL  154 (416)
T ss_pred             HHHhCCCc----eEEecCCcHHHHHHHHHHhcCCCCEEEEcCccceeeeecCC-----cceeccceeeeEEcccccccCC
Confidence            99999986    45667899999999999999999999999999988776664     2223444455567777766788


Q ss_pred             CCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccC
Q 010008          229 VDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLR  308 (520)
Q Consensus       229 iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~  308 (520)
                      +|++++++.++..+||+|+++.+.++...|+++|.++|+++|++|++|+||+.|.+..+....++.++|++++|+||+|+
T Consensus       155 ~d~~~le~~l~~~~~klVi~~~~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l~  234 (416)
T PRK13034        155 IDYDEVEELAKEHKPKLIIAGFSAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLR  234 (416)
T ss_pred             cCHHHHHHHHhhcCCeEEEECCCccccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccCC
Confidence            99999999986668999999878888889999999999999999999999999999888766676789999999999999


Q ss_pred             CCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEE
Q 010008          309 GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL  388 (520)
Q Consensus       309 GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v  388 (520)
                      ||.||+++++++     ++.++++...+++++++++.+.+++++.++.+....+..++.+++.+|+++|++.|.+.|+++
T Consensus       235 g~~GG~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~G~~~  309 (416)
T PRK13034        235 GPRGGMILTNDE-----EIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKERGYDL  309 (416)
T ss_pred             CCCCeEEEECcH-----HHHHHHHhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHcCCEe
Confidence            999999999874     566677777888878888888888888788776655567889999999999999999999998


Q ss_pred             ecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          389 VSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       389 ~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      ..+++++|.+++++...+.+...+.+.|+++||.++...+|++. .|..+++||+|++++|++|++++|++++++.|.++
T Consensus       310 ~~~~~~t~i~~v~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~  389 (416)
T PRK13034        310 VSGGTDNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDV  389 (416)
T ss_pred             ccCCCCCcEEEEEcCCCCCCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHH
Confidence            76446789988888777777788889999999999988788864 56678899999999999999999999999999998


Q ss_pred             HHHHHHHHHhhcccchhhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCC
Q 010008          468 VEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIP  518 (520)
Q Consensus       468 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~  518 (520)
                      ++..                    ++.    +.++++|++|.+|++.||++
T Consensus       390 ~~~~--------------------~~~----~~~~~~~~~~~~~~~~~~~~  416 (416)
T PRK13034        390 LDDL--------------------GNA----ALEQRVRKEVKALCSRFPIY  416 (416)
T ss_pred             HhcC--------------------CCH----HHHHHHHHHHHHHHHhCCCC
Confidence            7631                    011    25789999999999999963

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=100.00  E-value=6.9e-50  Score=422.32  Aligned_cols=412  Identities=54%  Similarity=0.844  Sum_probs=344.5

Q ss_pred             hhhhccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHH
Q 010008           70 VDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL  149 (520)
Q Consensus        70 ~~~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~  149 (520)
                      +..+|.+.||+++++|+++..++++.|+|+++||++|+.|++++...+.++|..|+++.+|+.|.+..+.+|+.++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la   81 (416)
T PRK00011          2 FMDNLAEYDPEIADAIEQELKRQEEHIELIASENFVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAK   81 (416)
T ss_pred             cchhhhhcCHHHHHHHHHHHHHHhcCeeeecccCcCCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999888999999999999999999999988899999


Q ss_pred             HHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCC
Q 010008          150 AAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV  229 (520)
Q Consensus       150 ~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~i  229 (520)
                      +++|++++    +|.++||++|+..++.++++|||+|++++++|+++++++.     .+.+.+.+.+++.++++++++.+
T Consensus        82 ~~~g~~~~----~i~~~sgt~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~  152 (416)
T PRK00011         82 ELFGAEYA----NVQPHSGSQANAAVYFALLKPGDTILGMDLAHGGHLTHGS-----PVNFSGKLYNVVSYGVDEETGLI  152 (416)
T ss_pred             HHhCCCce----eeecCCchHHHHHHHHHhcCCCCEEEEeccccCCcccccc-----ccccccceeeEeecCcCcccCCc
Confidence            99999874    4666899999999999999999999999999988876553     22233334577777777556899


Q ss_pred             CHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCC
Q 010008          230 DYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRG  309 (520)
Q Consensus       230 D~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~G  309 (520)
                      |++++++++++.+||+|+++.+++|...|+++|.++|+++|+++++|++|+.|++..+..+.++.++|++++|+||+++|
T Consensus       153 d~~~l~~~i~~~~~k~v~~~~~~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~~~di~~~S~~K~l~g  232 (416)
T PRK00011        153 DYDEVEKLALEHKPKLIIAGASAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRG  232 (416)
T ss_pred             CHHHHHHHHHhcCCCEEEECCCcCCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCCCCcEEEecCCcCCCC
Confidence            99999999976589999998788887889999999999999999999999998876655555555789999999999999


Q ss_pred             CCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEe
Q 010008          310 PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLV  389 (520)
Q Consensus       310 prgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~  389 (520)
                      |+||+++++++     ++.+++.....++..+++....++++..++..+...+++++.+++.++++++.+.|.+.|+++.
T Consensus       233 ~~gg~i~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~  307 (416)
T PRK00011        233 PRGGLILTNDE-----ELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAERGFRVV  307 (416)
T ss_pred             CCceEEEeCCH-----HHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeee
Confidence            99999999754     6777777666676677777778888777776655445688899999999999999999999876


Q ss_pred             cCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          390 SGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       390 ~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      ..++.++++++++.+.+++...+.+.|++.||.++....|.+. .++.+.++|+|+..++++|++++|++++++.|++++
T Consensus       308 ~~~~~~~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~  387 (416)
T PRK00011        308 SGGTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVL  387 (416)
T ss_pred             ecCCCCeEEEEeCcccCCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHH
Confidence            5444568888887655566778889999999999876556543 455677899999999999999999999999999887


Q ss_pred             HHHHHHHHhhcccchhhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCC
Q 010008          469 EITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG  519 (520)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~~  519 (520)
                      +...                   +++     .++++|++|.+|+++||.+.
T Consensus       388 ~~~~-------------------~~~-----~~~~~~~~~~~~~~~~~~~~  414 (416)
T PRK00011        388 DNPD-------------------DEA-----VIEEVKEEVKELCKRFPLYK  414 (416)
T ss_pred             hccC-------------------cch-----hHHHHHHHHHHHHHhCCCCC
Confidence            6420                   112     57899999999999999653

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=100.00  E-value=4.2e-47  Score=399.28  Aligned_cols=383  Identities=62%  Similarity=0.978  Sum_probs=321.6

Q ss_pred             ccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC
Q 010008           76 EADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD  155 (520)
Q Consensus        76 ~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~  155 (520)
                      ++|++++++|.+|..+++++|+|++++|++++.|++++.+.+..+|..|.|+.++|+|.+..+++|+.+++++++++|++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~   81 (402)
T cd00378           2 DVDPEIAEIIKKENERQRETLELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAE   81 (402)
T ss_pred             CcCHHHHHHHHHHHHHHHhCeeeeccCCcCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCC
Confidence            57999999999999989999999999999999999999999989999999999999999999999988889999999998


Q ss_pred             CCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHH
Q 010008          156 ENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLE  235 (520)
Q Consensus       156 ~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le  235 (520)
                      +.    +|.++||++|+.+++.++++|||+|++.+++|++++.++...   .+...|..+..++++.+++++.+|+++++
T Consensus        82 ~~----~v~~~sgt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~id~~~l~  154 (402)
T cd00378          82 YA----NVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFT---KVSASGKLFESVPYGVDPETGLIDYDALE  154 (402)
T ss_pred             ce----eeecCCcHHHHHHHHHHhcCCCCEEEEecCccCccccccccc---cccccceeEEEecCCcCcccCCcCHHHHH
Confidence            63    577789999999999999999999999999999887765421   13344553444554444336899999999


Q ss_pred             HHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCceEE
Q 010008          236 KTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMI  315 (520)
Q Consensus       236 ~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~GprgG~I  315 (520)
                      +.+...+||+|+++.++||...|+++|.++|+++|+++++|++|+.|++..+..+.++.++|++++|+||+|+|||||++
T Consensus       155 ~~i~~~~~~~v~~~~~~~~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~~~dv~~~s~sK~l~G~~gg~i  234 (402)
T cd00378         155 KMALEFKPKLIVAGASAYPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRGGLI  234 (402)
T ss_pred             HHHHhCCCCEEEecCcccCCCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCcccCCcEEEeccccCCCCCCceEE
Confidence            99975589999998888988889999999999999999999999999877665455555789999999999999999999


Q ss_pred             EeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCC
Q 010008          316 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDN  395 (520)
Q Consensus       316 ~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~  395 (520)
                      +++++     ++.+++.....++..++++...+++++.++.+....+++++.+++.++++++.+.|.+.|+.++.....+
T Consensus       235 ~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  309 (402)
T cd00378         235 LTRKG-----ELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKERGFKVVSGGTDN  309 (402)
T ss_pred             EeccH-----HHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEeecCCCC
Confidence            99874     5777776655666777777788888877877665445678889999999999999998999886433457


Q ss_pred             eeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCC-CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          396 HLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKS-ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       396 ~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~-~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +++|+++.+.+.+...+.+.|+++||.++....|+... +..+.++|||+..+|++|++++|++++++.|.++++.
T Consensus       310 ~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~~  385 (402)
T cd00378         310 HLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKD  385 (402)
T ss_pred             eEEEEeCCccCCCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence            88888887555667788888999999998766777642 3456789999999999999999999999999998864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=7.5e-31  Score=273.52  Aligned_cols=339  Identities=19%  Similarity=0.200  Sum_probs=248.8

Q ss_pred             ccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      +.|+|..++.  .+|+.+.+++...+.+... .|     + ....+.++++...+++.+.+|++.+.- -+|.+|+|+ +
T Consensus        29 ~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~~-~Y-----~-~~~G~~~LReaia~~~~~~~~~~~~~~-~eiivt~Ga~~  100 (393)
T COG0436          29 DVIDLSIGEPDFPTPEHIIEAAIEALEEGGT-HY-----T-PSAGIPELREAIAEKYKRRYGLDVDPE-EEIIVTAGAKE  100 (393)
T ss_pred             CEEEeCCCCCCCCCCHHHHHHHHHHHhcccC-CC-----C-CCCCCHHHHHHHHHHHHHHhCCCCCCC-CeEEEeCCHHH
Confidence            5789988876  6889999999887765321 12     2 223345777788899999998653211 247789998 9


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC--CCCCCCHHHHHHHhhhcCCcEEEE
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE--STGLVDYDMLEKTAILFRPKLIIA  248 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~--~~~~iD~d~le~~i~~~~pklIi~  248 (520)
                      |++.+++++++|||+|++++|.|..+        ...+.+.|.  ++++++++.  .++.+|.++|++++++ ++|+|++
T Consensus       101 al~~~~~a~~~pGDeVlip~P~Y~~y--------~~~~~~~gg--~~v~v~l~~~~~~f~~d~~~l~~~i~~-ktk~i~l  169 (393)
T COG0436         101 ALFLAFLALLNPGDEVLIPDPGYPSY--------EAAVKLAGG--KPVPVPLDEEENGFKPDLEDLEAAITP-KTKAIIL  169 (393)
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCCcCH--------HHHHHhcCC--EEEEEeCCcCccCCcCCHHHHHhhcCc-cceEEEE
Confidence            99999999999999999999866543        234566776  677777643  3689999999999999 9999999


Q ss_pred             cCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccc-cCCCCC--c---ccEEEeccCccc--CCCCceEE
Q 010008          249 GASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV-VADPFK--Y---CDVVTTTTHKSL--RGPRGGMI  315 (520)
Q Consensus       249 ~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~~p~~--~---aDiv~~S~hK~l--~GprgG~I  315 (520)
                      ++|||||  ..   .+++|.++|++||++||+|++ |.++++.+. +++.+.  .   .-|++.|++|++  +|||.||+
T Consensus       170 n~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEi-Y~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~  248 (393)
T COG0436         170 NSPNNPTGAVYSKEELKAIVELAREHDIIIISDEI-YEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWV  248 (393)
T ss_pred             eCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehh-hhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEe
Confidence            9999998  33   578899999999999999999 789998874 555443  2   237889999985  89999999


Q ss_pred             EeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCC
Q 010008          316 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS-PEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGS  393 (520)
Q Consensus       316 ~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~-~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt  393 (520)
                      ++++.     ++.+.+.+..-....+.+...+.++.+ ||+.-.. ...+...+.+.++++.+.+.|.+. |+.+..+..
T Consensus       249 v~~~~-----~l~~~~~~~~~~~~~~~~~~~Q~aa~~-aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~  322 (393)
T COG0436         249 VGPPE-----ELIAALRKLKSYLTSCAPTPAQYAAIA-ALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPE  322 (393)
T ss_pred             ecChH-----HHHHHHHHHHHhcccCCCHHHHHHHHH-HhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCC
Confidence            99942     566655532222234556666666554 6664321 233566678999999999999974 588877323


Q ss_pred             CCeeEEEEecCCCCCH-HHHHHHHhhcCeEEcCCCCCCCC-CC-CCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          394 DNHLVLVDLRPMGIDG-ARVEKILDMASITLNKNSVPGDK-SA-LVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       394 ~~~~~~vd~~~~g~~~-~~~~~~L~~~gI~v~~~~~Pg~~-~~-~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ...++|+++... .+. +.+.++|++.||.|    +||.. +. .+.++||++..      ..++++++..+.+.+.+.
T Consensus       323 Ga~Y~~~~i~~~-~d~~~f~~~Ll~~~gV~v----~PG~~Fg~~~g~~~vRis~~------~~~~~l~~a~~rl~~~~~  390 (393)
T COG0436         323 GAFYLFPKIPEL-LDSEEFAKKLLEEAGVAV----VPGSGFGEPPGEGYVRLSLA------TSEETLEEALRRLARFLA  390 (393)
T ss_pred             eeEEEEeecCCC-CCHHHHHHHHHHhCCEEE----ecccccCCCCCCCeEEEEEe------cCHHHHHHHHHHHHHHHH
Confidence            457778888643 455 55778889999999    77765 33 35689999854      235777777777776654

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-30  Score=270.52  Aligned_cols=348  Identities=22%  Similarity=0.236  Sum_probs=259.7

Q ss_pred             cceEec-CCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCC-CCCceeeecCChH-HH
Q 010008           95 SLELIA-SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQPLSGS-PA  171 (520)
Q Consensus        95 ~i~Lia-sen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~-~~~~~~V~~~sGs-~A  171 (520)
                      .+.|.- .....|..|.+++..++.+.|+....+  -+.......+..+.+|+.+++++|+++ +    +|..|.|+ +|
T Consensus        23 ~vylD~aa~~~~p~~V~~a~~~~~~~~~an~~r~--~~~~~~~~t~~~e~aRe~va~~~~a~~~~----eIvft~~tT~a   96 (405)
T COG0520          23 LVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRG--AHTLAEEATDLYEAAREAVARFLNADSSD----EIVFTRGTTEA   96 (405)
T ss_pred             eEEecCcccccCCHHHHHHHHHHHHhhcCCcCcc--cchHHHHHHHHHHHHHHHHHHHhCCCCCC----eEEEeCChhHH
Confidence            345542 334689999999998876665443222  122334444555689999999999995 5    45567777 89


Q ss_pred             HHHHHHhh---CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEE
Q 010008          172 NFEVYTAI---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA  248 (520)
Q Consensus       172 ~~~~l~al---l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~  248 (520)
                      +..+..++   +++||+|++.+.+|.+++..+....    ...|.  ++..++++ +++.+|.|++++.+++ +||+|.+
T Consensus        97 ln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~----~~~Ga--~v~~i~~~-~~g~~~~~~~~~~i~~-~Tklvai  168 (405)
T COG0520          97 LNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELA----KRTGA--KVRVIPLD-DDGLLDLDALEKLITP-KTKLVAL  168 (405)
T ss_pred             HHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHH----HhcCc--EEEEEecC-CCCCcCHHHHHHhcCC-CceEEEE
Confidence            99999988   7999999999999988776554221    22354  56666677 6899999999999988 9999999


Q ss_pred             cCCCC-C-CCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchh
Q 010008          249 GASAY-P-RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGV  325 (520)
Q Consensus       249 ~~s~~-p-~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~  325 (520)
                      +.-+| . ...|+++|.++||++|+++++|++|++|....++...   +||++++|.||||.||.| |+++++++     
T Consensus       169 s~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l---~~Df~afsgHKwl~gP~GiGvLy~r~~-----  240 (405)
T COG0520         169 SHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQEL---GCDFLAFSGHKWLLGPTGIGVLYVRKE-----  240 (405)
T ss_pred             ECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCCchhc---CCCEEEEcccccccCCCceEEEEEchH-----
Confidence            85444 3 3889999999999999999999999999875554332   699999999999999988 99999984     


Q ss_pred             hHHHhhccc---------------------CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-
Q 010008          326 ELESAINNA---------------------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-  383 (520)
Q Consensus       326 ~l~~~i~~~---------------------~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-  383 (520)
                       +.+.+...                     ...+-.|+|+...+.+++.|++.++..++++..++.....+++.+.|.+ 
T Consensus       241 -~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~  319 (405)
T COG0520         241 -LLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSEL  319 (405)
T ss_pred             -HHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence             43333111                     0112268899999999999999888777788888888889999999988 


Q ss_pred             CCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCC---CCCCCCCCCCEEEEccCCccccCCCHHHHHHH
Q 010008          384 LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSV---PGDKSALVPGGIRIGSPAMTTRGFSEKEFVAI  460 (520)
Q Consensus       384 ~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~---Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~l  460 (520)
                      .+++++.+.......++.+.-.+++..++...|.+.||.++.+..   |....-..++.+|+|...++|    ++|++++
T Consensus       320 ~~v~i~g~~~~~r~~~vsF~v~~~~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt----~edid~l  395 (405)
T COG0520         320 PGVEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNT----EEDVDRL  395 (405)
T ss_pred             CCeEEecCCcccCceEEEEEeCCCCHHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEeecCC----HHHHHHH
Confidence            578888754312333444444567889999999999999986531   221111124559999998887    8999999


Q ss_pred             HHHHHHHHH
Q 010008          461 ADFIHEGVE  469 (520)
Q Consensus       461 a~~i~~~l~  469 (520)
                      ++.|+++..
T Consensus       396 ~~aL~~~~~  404 (405)
T COG0520         396 LEALKKALA  404 (405)
T ss_pred             HHHHHHHhh
Confidence            999988653

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.97  E-value=2.6e-28  Score=259.21  Aligned_cols=342  Identities=17%  Similarity=0.213  Sum_probs=241.3

Q ss_pred             ccceEecCCC---CCh-H---HHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecC
Q 010008           94 KSLELIASEN---FTS-R---AVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPL  166 (520)
Q Consensus        94 ~~i~Liasen---~~~-~---~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~  166 (520)
                      +.|+|-.++.   +.+ .   ++.+++...+...       ...|++...+.+++    +.++++||.+.    + +.++
T Consensus        37 ~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~~g-------~~~Y~~~~g~~~Lr----eaia~~~~~~~----v-v~t~  100 (460)
T PRK13238         37 NPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMMRG-------DEAYAGSRSYYRLE----DAVKDIFGYPY----T-IPTH  100 (460)
T ss_pred             CEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHhC-------CcccCCCCCHHHHH----HHHHHHhCCCc----E-EECC
Confidence            6677777664   322 2   4677766666422       12355556677777    56778888764    2 5556


Q ss_pred             ChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC---------CCCCCCHHHHHHH
Q 010008          167 SGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE---------STGLVDYDMLEKT  237 (520)
Q Consensus       167 sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~---------~~~~iD~d~le~~  237 (520)
                      +|++|+.+++.++++||| |+++++.+..+        ...+...|.  +++.+++++         .++.+|+++|++.
T Consensus       101 ggt~A~~~~~~all~pGD-Vii~~p~~~~~--------~~~i~~~G~--~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~  169 (460)
T PRK13238        101 QGRAAEQILFPVLIKKGD-VVPSNYHFDTT--------RAHIELNGA--TAVDLVIDEALDTGSRHPFKGNFDLEKLEAL  169 (460)
T ss_pred             CHHHHHHHHHHHhCCCCC-EEccCCcccch--------HHHHHHcCC--EEEEEeccccccccccccccCCcCHHHHHHH
Confidence            777999999999999999 88777633322        123445565  566666642         1245999999999


Q ss_pred             hhhc---CCcEEEEcCCCCCC---CC---CHHHHHHHHHHhCCEEEEechhhcc-cccc-----cccCCC--------CC
Q 010008          238 AILF---RPKLIIAGASAYPR---DF---DYPRMRQIADAVGALLMMDMAHISG-LVAA-----SVVADP--------FK  294 (520)
Q Consensus       238 i~~~---~pklIi~~~s~~p~---~~---d~~~i~~ia~~~g~~li~D~Ah~~g-li~~-----~~~~~p--------~~  294 (520)
                      +++.   ++|+|+++.|+||+   ..   ++++|+++|++||++||+|+||+.+ +++.     +.....        ..
T Consensus       170 i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s  249 (460)
T PRK13238        170 IEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFS  249 (460)
T ss_pred             HhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcc
Confidence            9852   68999999888874   33   4679999999999999999998654 2221     111111        23


Q ss_pred             cccEEEeccCcccCCCCceEEEeeCCCcchhhHHHhhcccCCC--C--CCCCChHHHHHHHHHHHHHhcCchhHHHHHHH
Q 010008          295 YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFP--G--LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV  370 (520)
Q Consensus       295 ~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p--~--~~g~p~~~~iaala~al~~~~~~~~~~~~~~i  370 (520)
                      ++|++++|++|.+.+|.||+|+++++     ++.++++...+.  +  .+|+++...++|++++|++....   +|.+..
T Consensus       250 ~~D~~~~Sg~K~g~~~~GG~i~~~d~-----~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~---~~~~~~  321 (460)
T PRK13238        250 YADGLTMSAKKDAMVNIGGLLCFRDE-----DLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDE---DYLAYR  321 (460)
T ss_pred             cCcEEEEecccCCCCcceeEEEcChH-----HHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhCh---HHHHHH
Confidence            68999999999999999999999864     788877665422  2  36777777788999898876554   445555


Q ss_pred             HHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCC-------CC-CHHHHHHHHhhcCeEEcCCC---CCCCCC-----C
Q 010008          371 VSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM-------GI-DGARVEKILDMASITLNKNS---VPGDKS-----A  434 (520)
Q Consensus       371 ~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~-------g~-~~~~~~~~L~~~gI~v~~~~---~Pg~~~-----~  434 (520)
                      .+++++|.+.|.+.|++++.+ ...|++++|+...       +. +...+..++++.||.+....   .+.|..     .
T Consensus       322 ~~~~~~l~~~L~~~G~~~~~p-~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~  400 (460)
T PRK13238        322 IGQVEYLGEGLEEAGVPIQTP-AGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLP  400 (460)
T ss_pred             HHHHHHHHHHHHHCCCCeEcc-CCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccC
Confidence            667899999999999999865 3469999998643       12 23467788899999994432   222221     1


Q ss_pred             CCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHHHHH
Q 010008          435 LVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEA  474 (520)
Q Consensus       435 ~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~~~~  474 (520)
                      .....+|++++   +|+++.+.++++++.|.++.+....+
T Consensus       401 ~~~~~~Rla~~---rr~~~~~~~~~~~~~l~~~~~~~~~~  437 (460)
T PRK13238        401 APAELLRLAIP---RRVYTQSHMDYVAEALKAVKENRESI  437 (460)
T ss_pred             CccceEEEecc---cccCCHHHHHHHHHHHHHHHHhHhhc
Confidence            12478999977   78999999999999999988765433

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.97  E-value=7.9e-28  Score=248.77  Aligned_cols=331  Identities=18%  Similarity=0.122  Sum_probs=235.3

Q ss_pred             ceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHH
Q 010008           96 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV  175 (520)
Q Consensus        96 i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~  175 (520)
                      +++++++..+|++|++++...+..     +   +|-   . ..++.+.+++++++++|++.++  ..+.+.+|++|+..+
T Consensus         1 ~~~~~~~~~~~~~v~~a~~~~~~~-----~---~~~---~-~~~~~~~~~~~la~~~g~~~~~--~~~~~~~~t~al~~~   66 (356)
T cd06451           1 LLLIPGPSNVPPRVLKAMNRPMLG-----H---RSP---E-FLALMDEILEGLRYVFQTENGL--TFLLSGSGTGAMEAA   66 (356)
T ss_pred             CcccCCCcCCCHHHHHHhCCCccC-----C---CCH---H-HHHHHHHHHHHHHHHhcCCCCC--EEEEecCcHHHHHHH
Confidence            468899999999999999654321     1   111   1 2233334568999999996432  123456678999999


Q ss_pred             HHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC
Q 010008          176 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR  255 (520)
Q Consensus       176 l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~  255 (520)
                      +.++++|||+|++.++.|.++   .+.   ..+...|.  +++.+++++ ++.+|++++++.+++++|++|+++.++|++
T Consensus        67 ~~~~~~~g~~vl~~~~~~~~~---~~~---~~~~~~g~--~~~~v~~~~-~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~  137 (356)
T cd06451          67 LSNLLEPGDKVLVGVNGVFGD---RWA---DMAERYGA--DVDVVEKPW-GEAVSPEEIAEALEQHDIKAVTLTHNETST  137 (356)
T ss_pred             HHHhCCCCCEEEEecCCchhH---HHH---HHHHHhCC--CeEEeecCC-CCCCCHHHHHHHHhccCCCEEEEeccCCCc
Confidence            999999999999988755432   110   12233454  555666663 578999999999976689999988776654


Q ss_pred             --CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhc
Q 010008          256 --DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAIN  332 (520)
Q Consensus       256 --~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~  332 (520)
                        ..|+++|.++|+++|+++++|++|+.|....+...   .++|++++|+||||.+|.| |+++.++      ++.+.+.
T Consensus       138 G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~~~~---~~~d~~~~s~~K~l~~p~g~G~l~~~~------~~~~~~~  208 (356)
T cd06451         138 GVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMDE---WGVDVAYTGSQKALGAPPGLGPIAFSE------RALERIK  208 (356)
T ss_pred             ccccCHHHHHHHHHhcCCEEEEeeehhccCccccccc---cCccEEEecCchhccCCCCcceeEECH------HHHHHHH
Confidence              78999999999999999999999887754322111   1589999999999999877 9999987      5555443


Q ss_pred             c--cCC----------------CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCC-C
Q 010008          333 N--AVF----------------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG-S  393 (520)
Q Consensus       333 ~--~~~----------------p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~g-t  393 (520)
                      .  ...                ....++++...++++..+++.+...+++...++..++++.+.+.|.+.|+.+..+. .
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  288 (356)
T cd06451         209 KKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEALGLKLLAKPEL  288 (356)
T ss_pred             hcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCccc
Confidence            2  000                02345677777888878888766656678888899999999999998899887531 1


Q ss_pred             -CCeeEEEEecCCCCCHHHHHHHHhhc-CeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          394 -DNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       394 -~~~~~~vd~~~~g~~~~~~~~~L~~~-gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                       .+.+.++.+ +.+.+...+.+.|.+. ||.+..+    .. +..+++||+++..+++    ++|++++.+.+++++
T Consensus       289 ~~~~~~~~~~-~~~~~~~~~~~~L~~~~gI~~~~g----~~-~~~~~~iRis~~~~~~----~e~v~~~~~~l~~~~  355 (356)
T cd06451         289 RSPTVTAVLV-PEGVDGDEVVRRLMKRYNIEIAGG----LG-PTAGKVFRIGHMGEAT----REDVLGVLSALEEAL  355 (356)
T ss_pred             CCCceEEEEC-CCCCCHHHHHHHHHHhCCEEEecc----cc-cccCCEEEEecCCCCC----HHHHHHHHHHHHHHh
Confidence             122334443 3356778888888877 9999543    21 2235689999876654    899999999998875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.97  E-value=2.7e-28  Score=245.93  Aligned_cols=339  Identities=20%  Similarity=0.250  Sum_probs=254.1

Q ss_pred             CCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhh
Q 010008          101 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAI  179 (520)
Q Consensus       101 sen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~al  179 (520)
                      ...++.|.|+++|..+++..|  |.|..-+.-|.+..+.+| .|++.+++++|+++.    +|..|||. ++|.+++.+.
T Consensus         9 ATTp~~~~v~~~m~~~~~~~f--gNPsS~H~~G~~A~~~ve-~AR~~iA~llga~~~----eIiFTSG~TEsnNlaI~g~   81 (386)
T COG1104           9 ATTPVDPEVLEAMLPYLTEVF--GNPSSLHSFGREARKAVE-EAREQIAKLLGADPE----EIIFTSGATESNNLAIKGA   81 (386)
T ss_pred             ccCCCCHHHHHHHHHHHHhhc--CCccchhHhHHHHHHHHH-HHHHHHHHHhCCCCC----eEEEecCCcHHHHHHHHhh
Confidence            345789999999999998876  788776555777777777 689999999999996    34457766 9999888773


Q ss_pred             --C----CCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC
Q 010008          180 --L----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  253 (520)
Q Consensus       180 --l----~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~  253 (520)
                        .    +.|.+|++...+|.+.+....+     +  ...+|++.+++++ .+|.+|+++|++++++ +|-+|.+.+.||
T Consensus        82 ~~a~~~~~~~~HIIts~iEH~aVl~~~~~-----L--e~~g~~Vtyl~V~-~~G~v~~e~L~~al~~-~T~LVSim~aNn  152 (386)
T COG1104          82 ALAYRNAQKGKHIITSAIEHPAVLNTCRY-----L--ERQGFEVTYLPVD-SNGLVDLEQLEEALRP-DTILVSIMHANN  152 (386)
T ss_pred             HHhhhcccCCCeEEEcccccHHHHHHHHH-----H--HhcCCeEEEeCCC-CCCeEcHHHHHHhcCC-CceEEEEEeccc
Confidence              2    2478999999998776543321     1  1223577788888 4799999999999987 788887776665


Q ss_pred             --CCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHh
Q 010008          254 --PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA  330 (520)
Q Consensus       254 --p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~  330 (520)
                        ++.+|+++|.++|+++|+++++|++|+.|-++.+....   ++|++++|.|| +.||+| |+++.++..        +
T Consensus       153 E~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~---~vD~ls~SaHK-~~GpkGiGaLyv~~~~--------~  220 (386)
T COG1104         153 ETGTIQPIAEIGEICKERGILFHVDAVQAVGKIPIDLEEL---GVDLLSFSAHK-FGGPKGIGALYVRPGV--------R  220 (386)
T ss_pred             CeeecccHHHHHHHHHHcCCeEEEehhhhcCceecccccc---CcceEEeehhh-ccCCCceEEEEECCCC--------c
Confidence              44999999999999999999999999999876554332   48999999999 679999 999997641        1


Q ss_pred             hcccCCCC------CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCEEecCCCCCeeEEEEe
Q 010008          331 INNAVFPG------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVSGGSDNHLVLVDL  402 (520)
Q Consensus       331 i~~~~~p~------~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~v~~~gt~~~~~~vd~  402 (520)
                      +...+..|      -.|+.+.+.|++++.|++++. .+++....++.+.++.|.+.|.+.  ++.+.......-...+.+
T Consensus       221 ~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~-~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~  299 (386)
T COG1104         221 LEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAV-EELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNF  299 (386)
T ss_pred             cCceeccCcCCCCCCCCCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEE
Confidence            22211211      268899999999999999876 467778888889999999999873  444433221111113334


Q ss_pred             cCCCCCHHHHHHHHhhcCeEEcCCCC-------CCCC-------CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          403 RPMGIDGARVEKILDMASITLNKNSV-------PGDK-------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       403 ~~~g~~~~~~~~~L~~~gI~v~~~~~-------Pg~~-------~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      ...++.++.+...|+.+||.++.++-       |.+.       .....+.||+|+...|+    ++|++++++.+.+++
T Consensus       300 ~f~gv~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt----~eei~~~~~~l~~~i  375 (386)
T COG1104         300 SFPGVEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTT----EEEIDAAAEALKEII  375 (386)
T ss_pred             EeCCCcHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCC----HHHHHHHHHHHHHHH
Confidence            44578899999999999999987641       1110       01224679999987776    899999999999998


Q ss_pred             HHHH
Q 010008          469 EITL  472 (520)
Q Consensus       469 ~~~~  472 (520)
                      +...
T Consensus       376 ~~lr  379 (386)
T COG1104         376 KRLR  379 (386)
T ss_pred             HHHh
Confidence            8653

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.97  E-value=7.4e-28  Score=253.17  Aligned_cols=344  Identities=20%  Similarity=0.243  Sum_probs=246.5

Q ss_pred             ccceEe-cCCCCChHHHHHHHhhhhhccCCCCCCCC-CCCCcchhHHHHHHHHHHHHHHHcCC-CCCCCceeeecCChH-
Q 010008           94 KSLELI-ASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQPLSGS-  169 (520)
Q Consensus        94 ~~i~Li-asen~~~~~V~ea~~s~l~~~y~~G~p~~-ryy~g~~~~d~lE~~a~~~~~~lfg~-~~~~~~~~V~~~sGs-  169 (520)
                      +.+.|. ++..++|+.|.+++...+.+.+  +.+.. .+..+..+.+.++ .+++.+++++|+ +++    +|..++|+ 
T Consensus        19 ~~~yld~a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~r~~la~~~g~~~~~----~i~~~~~~t   91 (401)
T PRK10874         19 AGVYLDSAATALKPQAVIEATQQFYSLSA--GNVHRSQFAAAQRLTARYE-AAREQVAQLLNAPDAK----NIVWTRGTT   91 (401)
T ss_pred             ceEEEeCCcccCCCHHHHHHHHHHHHhcc--CCCCCcccHHHHHHHHHHH-HHHHHHHHHcCCCCCC----EEEEECCHH
Confidence            357776 4567899999999998887654  44432 2233444555555 567899999999 555    44445655 


Q ss_pred             HHHHHHHHhh----CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcE
Q 010008          170 PANFEVYTAI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKL  245 (520)
Q Consensus       170 ~A~~~~l~al----l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pkl  245 (520)
                      +++..++.++    ++|||+|++.+++|.+.+....    ......|.  +++.++++ .++.+|++++++.+++ +|++
T Consensus        92 ~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~----~~~~~~g~--~v~~v~~~-~~~~~d~~~l~~~i~~-~t~l  163 (401)
T PRK10874         92 ESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWL----MVAQQTGA--KVVKLPLG-ADRLPDVDLLPELITP-RTRI  163 (401)
T ss_pred             HHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHH----HHHHHhCC--EEEEEecC-CCCcCCHHHHHHhcCc-CcEE
Confidence            8999888887    4899999999998765432111    11233455  55555565 3578999999999987 8999


Q ss_pred             EEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCc
Q 010008          246 IIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPV  322 (520)
Q Consensus       246 Ii~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~  322 (520)
                      |++++++|++  ..|+++|.++|+++|+++++|++|+.|.+..++...   ++|++++|+||+ .||.| |+++.++   
T Consensus       164 v~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~---~~d~~~~s~~K~-~gp~G~G~l~~~~---  236 (401)
T PRK10874        164 LALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPADVQAL---DIDFYAFSGHKL-YGPTGIGVLYGKS---  236 (401)
T ss_pred             EEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCCchhc---CCCEEEEecccc-cCCCccEEEEEch---
Confidence            9999888775  789999999999999999999999877654332111   589999999995 57887 9999887   


Q ss_pred             chhhHHHhhcccC--------------------CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH
Q 010008          323 LGVELESAINNAV--------------------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLV  382 (520)
Q Consensus       323 ~~~~l~~~i~~~~--------------------~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~  382 (520)
                         ++.+.+....                    .....|+++...++++..|++.+.+.++....+++...++++.+.|.
T Consensus       237 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~  313 (401)
T PRK10874        237 ---ELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALA  313 (401)
T ss_pred             ---HHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh
Confidence               4444432111                    11225788888999999898877666666677888888889999998


Q ss_pred             HC-CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC---CCCCCCEEEEccCCccccCCCHHHHH
Q 010008          383 EL-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK---SALVPGGIRIGSPAMTTRGFSEKEFV  458 (520)
Q Consensus       383 ~~-G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~---~~~~~~giRig~~~~tt~g~~~~d~~  458 (520)
                      +. |++++.+. .+.++.+.+.  +++.+++.+.|.+.||.++.+..+...   .....++||+|+..++|    ++|++
T Consensus       314 ~~~g~~~~~~~-~~~i~~~~~~--~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt----~edid  386 (401)
T PRK10874        314 KLPGFRSFRCQ-DSSLLAFDFA--GVHHSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYNT----QSDVD  386 (401)
T ss_pred             cCCCEEEeCCC-CCcEEEEEEC--CcCHHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEEEEEecccCC----HHHHH
Confidence            74 88876532 3455555553  456788888999999999654321100   00124789999988765    89999


Q ss_pred             HHHHHHHHHHH
Q 010008          459 AIADFIHEGVE  469 (520)
Q Consensus       459 ~la~~i~~~l~  469 (520)
                      ++++.|+++++
T Consensus       387 ~ll~al~~~~~  397 (401)
T PRK10874        387 ALVNAVDRALE  397 (401)
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.96  E-value=2.4e-27  Score=248.99  Aligned_cols=343  Identities=20%  Similarity=0.222  Sum_probs=243.0

Q ss_pred             cceEe-cCCCCChHHHHHHHhhhhhccCCCCCCCC-CCCCcchhHHHHHHHHHHHHHHHcCCC-CCCCceeeecCChH-H
Q 010008           95 SLELI-ASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGS-P  170 (520)
Q Consensus        95 ~i~Li-asen~~~~~V~ea~~s~l~~~y~~G~p~~-ryy~g~~~~d~lE~~a~~~~~~lfg~~-~~~~~~~V~~~sGs-~  170 (520)
                      .+.|. ++..++|+.|++++...+...+  +.|.. .+..+.+..+.++ .+++.+++++|++ ++    +|..++|+ +
T Consensus        17 ~iyld~a~~~~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~r~~la~~~g~~~~~----~i~~t~g~t~   89 (398)
T TIGR03392        17 TVYLDSAATALKPQAVIDATQQFYRLSS--GTVHRSQHQQAQSLTARYE-LARQQVARFLNAPDAE----NIVWTRGTTE   89 (398)
T ss_pred             eEEeeCccccCCCHHHHHHHHHHHHhcC--CCCCCcccHHHHHHHHHHH-HHHHHHHHHhCCCCCC----eEEEeCChHH
Confidence            57776 4557899999999988876443  33421 2233334344444 5778999999995 54    34445655 9


Q ss_pred             HHHHHHHhh----CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEE
Q 010008          171 ANFEVYTAI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       171 A~~~~l~al----l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklI  246 (520)
                      ++..++.++    ++|||+|++.+++|.+.+....    ......|.  +++.++++ .++.+|++++++++++ +|++|
T Consensus        90 ~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~----~~~~~~g~--~v~~v~~~-~~~~~~~~~l~~~i~~-~t~lv  161 (398)
T TIGR03392        90 SINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWL----MVAQQTGA--KVVKLPIG-ADLLPDIRQLPELLTP-RTRIL  161 (398)
T ss_pred             HHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHH----HHHHHcCc--EEEEEecC-CCCCcCHHHHHHHhcc-CceEE
Confidence            999888887    5899999999998765422111    11233454  66666666 3477999999999987 89999


Q ss_pred             EEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcc
Q 010008          247 IAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVL  323 (520)
Q Consensus       247 i~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~  323 (520)
                      ++++++|++  ..|+++|.++|+++|+++++|++|+.|....+....   ++|++++|+||. .||.| |+++.++    
T Consensus       162 ~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~---~~d~~~~s~~K~-~gp~G~G~l~~~~----  233 (398)
T TIGR03392       162 ALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQAL---DIDFYAFSGHKL-YGPTGIGVLYGKT----  233 (398)
T ss_pred             EEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhc---CCCEEEEecccc-cCCCceEEEEEcH----
Confidence            998888775  789999999999999999999999777553222111   589999999995 57776 9999887    


Q ss_pred             hhhHHHhhcccC--------------------CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Q 010008          324 GVELESAINNAV--------------------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE  383 (520)
Q Consensus       324 ~~~l~~~i~~~~--------------------~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~  383 (520)
                        ++.+++....                    .....|+++...++++..|++.+.+.+++...++..+.++++.+.|.+
T Consensus       234 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~  311 (398)
T TIGR03392       234 --ELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQ  311 (398)
T ss_pred             --HHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Confidence              4444432110                    011257889989999999998776666677778888888889888887


Q ss_pred             C-CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC--CC-CCCCEEEEccCCccccCCCHHHHHH
Q 010008          384 L-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK--SA-LVPGGIRIGSPAMTTRGFSEKEFVA  459 (520)
Q Consensus       384 ~-G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~--~~-~~~~giRig~~~~tt~g~~~~d~~~  459 (520)
                      . |+++.... .++++.+.+.  +++++++.+.|.+.||.++.+......  .. ..+++||+|++.++|    ++|+++
T Consensus       312 l~g~~~~~~~-~~~i~~~~~~--~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t----~~ei~~  384 (398)
T TIGR03392       312 LPGFRSFRCP-GSSLLAFDFA--GVHHSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNT----QQDVDA  384 (398)
T ss_pred             CCCeEEeCCC-CCcEEEEEeC--CcCHHHHHHHHHhCCEEEecCccchHHHHHHhCCCCEEEEEeeccCC----HHHHHH
Confidence            4 88876432 3455555543  567788888999999999754311000  00 024689999987765    899999


Q ss_pred             HHHHHHHHHH
Q 010008          460 IADFIHEGVE  469 (520)
Q Consensus       460 la~~i~~~l~  469 (520)
                      +++.|+++++
T Consensus       385 l~~~l~~~~~  394 (398)
T TIGR03392       385 LVDAVGAALE  394 (398)
T ss_pred             HHHHHHHHHH
Confidence            9999998765

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.96  E-value=2.1e-27  Score=250.19  Aligned_cols=345  Identities=17%  Similarity=0.134  Sum_probs=243.4

Q ss_pred             cceEe-cCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC-CCCCCceeeecCChH-HH
Q 010008           95 SLELI-ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQPLSGS-PA  171 (520)
Q Consensus        95 ~i~Li-asen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~-~~~~~~~~V~~~sGs-~A  171 (520)
                      .+.|. ++..++|+.|++++...+...+.....+ .+..+....+.++ .+++.+++++|+ +++    +|..++|+ ++
T Consensus        24 ~iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~r~~la~~~~~~~~~----~v~~t~g~t~~   97 (406)
T PRK09295         24 LAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRG-IHTLSAQATEKME-NVRKQAALFINARSAE----ELVFVRGTTEG   97 (406)
T ss_pred             eEEEeCcccccCCHHHHHHHHHHHHhcCCCCCCc-ccHHHHHHHHHHH-HHHHHHHHHcCcCCCC----eEEEeCCHHHH
Confidence            46775 4667899999999998887544221122 2233444555565 467899999998 454    34456666 88


Q ss_pred             HHHHHHh----hCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 010008          172 NFEVYTA----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII  247 (520)
Q Consensus       172 ~~~~l~a----ll~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi  247 (520)
                      +..++.+    +++|||+|++.+++|.+.+....    ......|.  +++.++++ +++.+|++++++++++ +|++|+
T Consensus        98 l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~----~~~~~~g~--~v~~v~~~-~~~~~d~~~l~~~i~~-~t~lv~  169 (406)
T PRK09295         98 INLVANSWGNSNVRAGDNIIISEMEHHANIVPWQ----MLCARVGA--ELRVIPLN-PDGTLQLETLPALFDE-RTRLLA  169 (406)
T ss_pred             HHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHH----HHHHHcCc--EEEEEecC-CCCCCCHHHHHHhcCC-CcEEEE
Confidence            8888776    46899999999988765432111    11123454  55566665 4578999999999987 899999


Q ss_pred             EcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcch
Q 010008          248 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLG  324 (520)
Q Consensus       248 ~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~  324 (520)
                      +++++|++  ..|+++|.++|+++|+++++|++|..|....++..   -++|++++|+|| +.||.| |+++.+++    
T Consensus       170 l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~---~~~D~~~~s~~K-~~gp~G~G~l~~~~~----  241 (406)
T PRK09295        170 ITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQA---LDCDFYVFSGHK-LYGPTGIGILYVKEA----  241 (406)
T ss_pred             EecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccCchh---cCCCEEEeehhh-ccCCCCcEEEEEchH----
Confidence            99887776  88999999999999999999999987765332211   168999999999 567887 99999873    


Q ss_pred             hhHHHhhccc---------------------CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Q 010008          325 VELESAINNA---------------------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE  383 (520)
Q Consensus       325 ~~l~~~i~~~---------------------~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~  383 (520)
                        +.+.+...                     ......|+++...++++..|++.+.+.+.+...++..+.++++.+.|.+
T Consensus       242 --~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  319 (406)
T PRK09295        242 --LLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLES  319 (406)
T ss_pred             --hHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Confidence              33322110                     0112367899999999999998877656777778888888889999877


Q ss_pred             C-CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC---CCCCCCEEEEccCCccccCCCHHHHHH
Q 010008          384 L-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK---SALVPGGIRIGSPAMTTRGFSEKEFVA  459 (520)
Q Consensus       384 ~-G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~---~~~~~~giRig~~~~tt~g~~~~d~~~  459 (520)
                      . |++++.+....+++.+.+  .+.+++++.+.|++.||.++.+......   ....++.+|+|.+.+||    ++|+++
T Consensus       320 ~~~~~~~~~~~~~~iv~~~~--~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt----~~did~  393 (406)
T PRK09295        320 VPDLTLYGPQNRLGVIAFNL--GKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNT----HEEVDR  393 (406)
T ss_pred             CCCEEEeCCCCCceEEEEEE--CCcCHHHHHHHHHhCCeEEeccccchHHHHHHHCCCCEEEEEccCCCC----HHHHHH
Confidence            4 788876422234444444  3456788888999999999654211000   00124679999998876    899999


Q ss_pred             HHHHHHHHHH
Q 010008          460 IADFIHEGVE  469 (520)
Q Consensus       460 la~~i~~~l~  469 (520)
                      +++.|+++..
T Consensus       394 l~~~l~~i~~  403 (406)
T PRK09295        394 LVAGLQRIHR  403 (406)
T ss_pred             HHHHHHHHHH
Confidence            9999988643

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.96  E-value=5.6e-27  Score=246.57  Aligned_cols=344  Identities=19%  Similarity=0.187  Sum_probs=241.5

Q ss_pred             cceEec-CCCCChHHHHHHHhhhhhccCCCCCCCCC-CCCcchhHHHHHHHHHHHHHHHcCCC-CCCCceeeecCChH-H
Q 010008           95 SLELIA-SENFTSRAVMEAVGSCLTNKYSEGLPGKR-YYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGS-P  170 (520)
Q Consensus        95 ~i~Lia-sen~~~~~V~ea~~s~l~~~y~~G~p~~r-yy~g~~~~d~lE~~a~~~~~~lfg~~-~~~~~~~V~~~sGs-~  170 (520)
                      .+.|.. +..++|+.|.+++...+.+.+  +.|... ++.+....+.++ .+++.+++++|++ ++    +|..++|+ +
T Consensus        19 ~~yld~~~~~~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~r~~ia~~~~~~~~~----~v~~~~g~t~   91 (403)
T TIGR01979        19 LVYLDSAATSQKPQQVIDAVAEYYRNSN--ANVHRGIHTLSVRATEAYE-AVREKVAKFINAASDE----EIVFTRGTTE   91 (403)
T ss_pred             eEEEeCccccCCCHHHHHHHHHHHHhCC--CCCCCCccHHHHHHHHHHH-HHHHHHHHHhCcCCCC----eEEEeCCHHH
Confidence            466754 556889999999988876654  333221 222223333444 5678899999998 44    34456665 8


Q ss_pred             HHHHHHHhh----CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEE
Q 010008          171 ANFEVYTAI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       171 A~~~~l~al----l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklI  246 (520)
                      ++..++.++    ++|||+|++.+++|.+++..+.    ......|.  +++.++++ +++.+|++++++.+++ +|++|
T Consensus        92 ~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~----~~~~~~g~--~~~~v~~~-~~~~~~~~~l~~~i~~-~~~lv  163 (403)
T TIGR01979        92 SINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQ----LLAERTGA--TLKFIPLD-DDGTLDLDDLEKLLTE-KTKLV  163 (403)
T ss_pred             HHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHH----HHHHhcCc--EEEEEecC-CCCCCCHHHHHHHhcc-CCeEE
Confidence            888777764    6899999999988776532211    11223454  55556666 5688999999999987 89999


Q ss_pred             EEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcc
Q 010008          247 IAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVL  323 (520)
Q Consensus       247 i~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~  323 (520)
                      +++.++|++  ..|+++|.++|+++|+++++|++|+.|....+....   ++|++++|+||++ ||.| |+++.++    
T Consensus       164 ~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~~~---~~d~~~~s~~K~~-gp~G~g~l~~~~----  235 (403)
T TIGR01979       164 AITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQAL---DCDFYVFSGHKMY-GPTGIGVLYGKE----  235 (403)
T ss_pred             EEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccCcccc---CCCEEEEeccccc-CCCCceEEEEch----
Confidence            998777765  789999999999999999999999877653322111   5899999999975 7877 9999887    


Q ss_pred             hhhHHHhhcccC--------------------CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Q 010008          324 GVELESAINNAV--------------------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE  383 (520)
Q Consensus       324 ~~~l~~~i~~~~--------------------~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~  383 (520)
                        ++.+.+....                    .....|+++...++++..+++.+...+.+...+++.+.++.+.+.|++
T Consensus       236 --~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~  313 (403)
T TIGR01979       236 --ELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGE  313 (403)
T ss_pred             --HHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Confidence              4444332110                    011247888888888888888776556677888888889999999987


Q ss_pred             C-CCEEecCCC---CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC---CCCCCCEEEEccCCccccCCCHHH
Q 010008          384 L-GYKLVSGGS---DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK---SALVPGGIRIGSPAMTTRGFSEKE  456 (520)
Q Consensus       384 ~-G~~v~~~gt---~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~---~~~~~~giRig~~~~tt~g~~~~d  456 (520)
                      . |++++.+..   ..+++.+.+.  +.++.++.+.|++.||.++.+......   ....++++||+++.+++    ++|
T Consensus       314 ~~g~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t----~~d  387 (403)
T TIGR01979       314 IPGLRIYGPRDAEDRGGIISFNVE--GVHPHDVGTILDEEGIAVRSGHHCAQPLMRRFGVPATCRASFYIYNT----EED  387 (403)
T ss_pred             CCCEEEeCCCCccccCceEEEEeC--CcCHHHHHHHHhhCCEEEcchhhhhHHHHHHhCCCCEEEEEeccCCC----HHH
Confidence            4 888876421   1345555553  356778889999999999653210000   00125789999887765    899


Q ss_pred             HHHHHHHHHHHHH
Q 010008          457 FVAIADFIHEGVE  469 (520)
Q Consensus       457 ~~~la~~i~~~l~  469 (520)
                      +++++++|+++++
T Consensus       388 i~~l~~~l~~~~~  400 (403)
T TIGR01979       388 IDALVEALKKVRK  400 (403)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988665

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.96  E-value=9.7e-27  Score=242.15  Aligned_cols=335  Identities=19%  Similarity=0.174  Sum_probs=234.9

Q ss_pred             cCCCCChHHHHHHHhhhhhccCCCCCCCCCC-CCcchhHHHHHHHHHHHHHHHcCCC-CCCCceeeecCCh-HHHHHHHH
Q 010008          100 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRY-YGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSG-SPANFEVY  176 (520)
Q Consensus       100 asen~~~~~V~ea~~s~l~~~y~~G~p~~ry-y~g~~~~d~lE~~a~~~~~~lfg~~-~~~~~~~V~~~sG-s~A~~~~l  176 (520)
                      .+.+++|+.+.+++...+...+  ++|.... ..+....+.+ ..+++++++++|++ ++    +|..++| ++|+..++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~----~v~~~~g~t~a~~~~~   78 (373)
T cd06453           6 AATSQKPQPVIDAIVDYYRHYN--ANVHRGVHELSARATDAY-EAAREKVARFINAPSPD----EIIFTRNTTEAINLVA   78 (373)
T ss_pred             ccccCCCHHHHHHHHHHHHhcC--CCCCCCccHHHHHHHHHH-HHHHHHHHHHhCCCCCC----eEEEeCCHHHHHHHHH
Confidence            3667899999999998886543  3443211 2222333333 35668899999998 43    3444454 58999999


Q ss_pred             HhhCC---CCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC
Q 010008          177 TAILK---PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  253 (520)
Q Consensus       177 ~all~---pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~  253 (520)
                      .++..   |||+|++.+++|.+++....    ......|.  +++.++++ +++.+|++++++.+.+ ++++|+++.++|
T Consensus        79 ~~l~~~~~~g~~vl~~~~~~~~~~~~~~----~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~~  150 (373)
T cd06453          79 YGLGRANKPGDEIVTSVMEHHSNIVPWQ----QLAERTGA--KLKVVPVD-DDGQLDLEALEKLLTE-RTKLVAVTHVSN  150 (373)
T ss_pred             HHhhhcCCCCCEEEECcchhHHHHHHHH----HHHhhcCc--EEEEeecC-CCCCcCHHHHHHHhcC-CceEEEEeCccc
Confidence            99877   99999999988776432111    01123454  55555565 4678999999999987 899999988877


Q ss_pred             CC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCceEEEeeCCCcchhhHHHhh
Q 010008          254 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAI  331 (520)
Q Consensus       254 p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i  331 (520)
                      ++  ..|+++|.++|+++|++|++|++|+.|....+...   .++|++++|+||++.+++.|++++++      ++.+.+
T Consensus       151 ~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~---~~~d~~~~s~~K~~~~~g~g~~~~~~------~~~~~~  221 (373)
T cd06453         151 VLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQD---LGCDFLAFSGHKMLGPTGIGVLYGKE------ELLEEM  221 (373)
T ss_pred             ccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCceeeeccc---cCCCEEEeccccccCCCCcEEEEEch------HHhhcC
Confidence            65  77999999999999999999999887765322111   16899999999999876669999987      444444


Q ss_pred             cccCC--------------------CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEec
Q 010008          332 NNAVF--------------------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVS  390 (520)
Q Consensus       332 ~~~~~--------------------p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~  390 (520)
                      .....                    ....|+++...+.++..+++.+...+.++..++..++++++.+.|++. |++++.
T Consensus       222 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  301 (373)
T cd06453         222 PPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYG  301 (373)
T ss_pred             CCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeC
Confidence            32110                    011357777788888888888776677888888889999999999885 788874


Q ss_pred             CC-CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC---CCCCCCEEEEccCCccccCCCHHHHHHHHHHH
Q 010008          391 GG-SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK---SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  464 (520)
Q Consensus       391 ~g-t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~---~~~~~~giRig~~~~tt~g~~~~d~~~la~~i  464 (520)
                      +. ...+++.+.+.  +++..++.+.|.+.||.+..+......   ....++.||+++..++|    ++|++++++.|
T Consensus       302 ~~~~~~~~~~~~~~--~~~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t----~~di~~~~~~l  373 (373)
T cd06453         302 DAEDRAGVVSFNLE--GIHPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNT----EEEIDALVEAL  373 (373)
T ss_pred             CccccCCeEEEEEC--CcCHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCC----HHHHHHHHhhC
Confidence            32 23445555553  457788888999999998643211000   01125689999887665    89999998764

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.96  E-value=1.6e-26  Score=242.58  Aligned_cols=337  Identities=20%  Similarity=0.213  Sum_probs=229.0

Q ss_pred             ceEe-cCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHHH
Q 010008           96 LELI-ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANF  173 (520)
Q Consensus        96 i~Li-asen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~  173 (520)
                      +.|. ++..++|+.|++++...+...+.  .++..|.. .....++.+.+++.+++++|++++    +|..++|+ +++.
T Consensus        19 ~yl~~~~~~~~p~~v~~a~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~l~~~ia~~~~~~~~----~v~~~~~~t~~l~   91 (397)
T TIGR01976        19 VFFDNPAGTQIPQSVADAVSAALTRSNA--NRGGAYES-SRRADQVVDDAREAVADLLNADPP----EVVFGANATSLTF   91 (397)
T ss_pred             EEecCCccCCCCHHHHHHHHHHHHhcCC--CCCCCchH-HHHHHHHHHHHHHHHHHHcCCCCC----eEEEeCCHHHHHH
Confidence            5664 46678999999999888764321  12212211 122223333566889999999865    34445555 7777


Q ss_pred             HHHHhh---CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 010008          174 EVYTAI---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  250 (520)
Q Consensus       174 ~~l~al---l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~  250 (520)
                      .++.++   ++|||+|++.+++|.+++....    ......|.  +++.++++++++.+|++++++.+++ ++++|++++
T Consensus        92 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~----~~~~~~g~--~~~~~~~~~~~~~~~~~~l~~~i~~-~~~lv~i~~  164 (397)
T TIGR01976        92 LLSRAISRRWGPGDEVIVTRLDHEANISPWL----QAAERAGA--KVKWARVDEATGELHPDDLASLLSP-RTRLVAVTA  164 (397)
T ss_pred             HHHHHHHhcCCCCCEEEEcCCchHhHHHHHH----HHHHhcCC--EEEEEeccccCCCcCHHHHHHhcCC-CceEEEEeC
Confidence            666654   7899999999988765532110    11233454  5556666654688999999999987 899999988


Q ss_pred             CCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCceEEEeeCCCcchhhHH
Q 010008          251 SAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELE  328 (520)
Q Consensus       251 s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~  328 (520)
                      ++|++  ..|+++|.++|+++|+++++|++|+.|....+...   -++|++++|+||++ ||+.|++++++      ++.
T Consensus       165 ~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~---~~~d~~~~s~~K~~-g~~~G~l~~~~------~~~  234 (397)
T TIGR01976       165 ASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDVQA---TGADFLTCSAYKFF-GPHMGILWGRP------ELL  234 (397)
T ss_pred             CCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccccCCCHHH---cCCCEEEEechhhc-CCceEEEEEcH------HHH
Confidence            87775  78999999999999999999999976643222111   16899999999997 78899999987      555


Q ss_pred             HhhcccCC---------CCCCCCChHHHHHHHHHHHHHhcCch--------------hHHHHHHHHHHHHHHHHHHHHC-
Q 010008          329 SAINNAVF---------PGLQGGPHNHTIGGLAVCLKHAQSPE--------------FKVYQNKVVSNCRALASRLVEL-  384 (520)
Q Consensus       329 ~~i~~~~~---------p~~~g~p~~~~iaala~al~~~~~~~--------------~~~~~~~i~~na~~l~~~L~~~-  384 (520)
                      +.+.....         ....|+++...++++..|++.+...+              ++...++..+.++++.+.|.+. 
T Consensus       235 ~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~  314 (397)
T TIGR01976       235 MNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLP  314 (397)
T ss_pred             hhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            44432211         11257888888888888887664332              3445566666777888888775 


Q ss_pred             CCEEecC---CCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCC--------CCCCCCCCCCEEEEccCCccccCCC
Q 010008          385 GYKLVSG---GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSV--------PGDKSALVPGGIRIGSPAMTTRGFS  453 (520)
Q Consensus       385 G~~v~~~---gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~--------Pg~~~~~~~~giRig~~~~tt~g~~  453 (520)
                      +++++.+   ....+++.+.+.  +.+..++.+.|++.||.++.+..        |+.  +...+.||||.+.++|    
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~--~~~~~~iRis~~~~~t----  386 (397)
T TIGR01976       315 GVTLYGVARLAARVPTVSFTVH--GLPPQRVVRRLADQGIDAWAGHFYAVRLLRRLGL--NDEGGVVRVGLAHYNT----  386 (397)
T ss_pred             CEEEeCCCCccCCCceEEEEeC--CcCHHHHHHHHHHCCeEEEeCccchHHHHHHhCC--CCCCCeEEEEeeccCC----
Confidence            4888754   123445555443  45677888999999999975421        111  1134689999987765    


Q ss_pred             HHHHHHHHHHH
Q 010008          454 EKEFVAIADFI  464 (520)
Q Consensus       454 ~~d~~~la~~i  464 (520)
                      ++|++++++.|
T Consensus       387 ~~di~~l~~~l  397 (397)
T TIGR01976       387 AEEVDRLLEAL  397 (397)
T ss_pred             HHHHHHHHHhC
Confidence            89999998764

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.96  E-value=1.2e-26  Score=245.72  Aligned_cols=346  Identities=17%  Similarity=0.130  Sum_probs=242.2

Q ss_pred             cceEec-CCCCChHHHHHHHhhhhhccCCCCCCCC-CCCCcchhHHHHHHHHHHHHHHHcCCC-CCCCceeeecCChH-H
Q 010008           95 SLELIA-SENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGS-P  170 (520)
Q Consensus        95 ~i~Lia-sen~~~~~V~ea~~s~l~~~y~~G~p~~-ryy~g~~~~d~lE~~a~~~~~~lfg~~-~~~~~~~V~~~sGs-~  170 (520)
                      .+.|.. +..++|+.|++++...+...+.  .+.. .++.+.+..+.++ .+++.+++++|++ ++    +|..++|+ +
T Consensus        33 ~iyLd~a~~~~~p~~v~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~r~~la~~~~~~~~~----~v~~t~g~t~  105 (424)
T PLN02855         33 LVYLDNAATSQKPAAVLDALQDYYEEYNS--NVHRGIHALSAKATDAYE-LARKKVAAFINASTSR----EIVFTRNATE  105 (424)
T ss_pred             eEEeeCccccCCCHHHHHHHHHHHHhcCC--CCCCccchHHHHHHHHHH-HHHHHHHHHcCCCCCC----EEEEeCCHHH
Confidence            466653 5567899999999888765442  2221 1233334444454 5678999999996 34    34455555 8


Q ss_pred             HHHHHHHh----hCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEE
Q 010008          171 ANFEVYTA----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       171 A~~~~l~a----ll~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklI  246 (520)
                      ++..++.+    .++|||+|++.+++|.+.+....    ......|.  +++.+++++ ++.+|++++++.+++ ++++|
T Consensus       106 al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~----~~a~~~g~--~v~~v~~~~-~~~~~~~~l~~~i~~-~t~lv  177 (424)
T PLN02855        106 AINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQ----LVAQKTGA--VLKFVGLTP-DEVLDVEQLKELLSE-KTKLV  177 (424)
T ss_pred             HHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHH----HHHHHcCC--EEEEEecCC-CCCcCHHHHHHHhcc-CceEE
Confidence            88888775    36899999999988865432111    11123454  555666653 456999999999987 89999


Q ss_pred             EEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcc
Q 010008          247 IAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVL  323 (520)
Q Consensus       247 i~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~  323 (520)
                      +++.++|++  ..|+++|.++|+++|+++++|++|+.|.+..++...   ++|++++|+|| +.||.| |++++++    
T Consensus       178 ~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~---~~d~~~~s~~K-~~gp~G~G~l~~~~----  249 (424)
T PLN02855        178 ATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTL---GADFLVASSHK-MCGPTGIGFLWGKS----  249 (424)
T ss_pred             EEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCCchhc---CCCEEEeeccc-ccCCCccEEEEEch----
Confidence            999887765  889999999999999999999999877653322111   58999999999 568887 9999987    


Q ss_pred             hhhHHHhhccc--------------------CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Q 010008          324 GVELESAINNA--------------------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE  383 (520)
Q Consensus       324 ~~~l~~~i~~~--------------------~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~  383 (520)
                        ++.+++...                    ......|+++...+++++.+++.+.+.+.++..+++.+.++.+.+.|.+
T Consensus       250 --~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~  327 (424)
T PLN02855        250 --DLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSS  327 (424)
T ss_pred             --hhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Confidence              343333211                    0012367899999999999998776667778888888889999999877


Q ss_pred             C-CCEEecCCC-----CCeeEEEEecCCCCCHHHHHHHHhhc-CeEEcCCCCC---CCCCCCCCCEEEEccCCccccCCC
Q 010008          384 L-GYKLVSGGS-----DNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVP---GDKSALVPGGIRIGSPAMTTRGFS  453 (520)
Q Consensus       384 ~-G~~v~~~gt-----~~~~~~vd~~~~g~~~~~~~~~L~~~-gI~v~~~~~P---g~~~~~~~~giRig~~~~tt~g~~  453 (520)
                      . |++++.+..     ...++.+.+  .+++..++.+.|.+. ||.++.+..-   ....-..++.||+|.+.++|    
T Consensus       328 ~~g~~i~~~~~~~~~~r~~~v~~~~--~~~~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt----  401 (424)
T PLN02855        328 VPGVRIYGPKPSEGVGRAALCAFNV--EGIHPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNT----  401 (424)
T ss_pred             CCCEEEeCCCcccccCcccEEEEEE--CCcCHHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCC----
Confidence            4 888886421     123444444  345678888889776 9999753210   00000113679999988876    


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010008          454 EKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       454 ~~d~~~la~~i~~~l~~~  471 (520)
                      ++|++++++.|+++++..
T Consensus       402 ~~di~~l~~~l~~~~~~~  419 (424)
T PLN02855        402 KEEVDAFIHALKDTIAFF  419 (424)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            899999999999988654

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.95  E-value=3.4e-26  Score=238.76  Aligned_cols=341  Identities=18%  Similarity=0.221  Sum_probs=235.2

Q ss_pred             cCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh
Q 010008          100 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI  179 (520)
Q Consensus       100 asen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al  179 (520)
                      ++..++|+.|++++...+.+.  .|+|+..+..+..+.+.++ .+++++++++|++++++   +...+|++++.+++.++
T Consensus         6 aa~~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~r~~la~~~g~~~~~i---~~t~~~t~a~~~al~~~   79 (379)
T TIGR03402         6 NATTRVDPEVLEAMLPYFTEY--FGNPSSMHSFGGEVGKAVE-EAREQVAKLLGAEPDEI---IFTSGGTESDNTAIKSA   79 (379)
T ss_pred             cCCCCCCHHHHHHHHHHHHhc--CCCCCcccHHHHHHHHHHH-HHHHHHHHHhCCCCCeE---EEeCcHHHHHHHHHHHH
Confidence            456688999999999888753  3666643222334444444 57789999999987532   23345569998888776


Q ss_pred             C---CCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC-
Q 010008          180 L---KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-  255 (520)
Q Consensus       180 l---~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~-  255 (520)
                      +   .+||+|++.+.+|.+......     .+...|.  +++.++++ +++.+|++++++.+++ +++++++..++|++ 
T Consensus        80 ~~~~~~~~~vv~~~~~~~s~~~~~~-----~~~~~G~--~v~~v~~~-~~g~~~~~~l~~~i~~-~~~lv~i~~~~n~tG  150 (379)
T TIGR03402        80 LAAQPEKRHIITTAVEHPAVLSLCQ-----HLEKQGY--KVTYLPVD-EEGRLDLEELRAAITD-DTALVSVMWANNETG  150 (379)
T ss_pred             HHhcCCCCeEEEcccccHHHHHHHH-----HHHHcCC--EEEEEccC-CCCcCCHHHHHHhcCC-CcEEEEEEcccCCee
Confidence            3   467899988877755432211     1122354  55556665 4578999999999987 89999888777765 


Q ss_pred             -CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhc-
Q 010008          256 -DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAIN-  332 (520)
Q Consensus       256 -~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~-  332 (520)
                       ..|+++|.++|+++|+++++|++|+.|....++...   ++|++++|+|| +.||.| |+++.+++.    .+...+. 
T Consensus       151 ~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~~~~~---~~D~~~~s~~K-~~gp~G~g~l~v~~~~----~~~p~~~g  222 (379)
T TIGR03402       151 TIFPIEEIGEIAKERGALFHTDAVQAVGKIPIDLKEM---NIDMLSLSGHK-LHGPKGVGALYIRKGT----RFRPLLRG  222 (379)
T ss_pred             ecccHHHHHHHHHHcCCEEEEECcccccccccCcccC---CCCEEEEcHHH-cCCCCceEEEEECCCC----CCCCcccC
Confidence             889999999999999999999999887654332221   68999999999 778998 999888741    0100000 


Q ss_pred             -ccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH--CCCEEecCCCC--CeeEEEEecCCCC
Q 010008          333 -NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE--LGYKLVSGGSD--NHLVLVDLRPMGI  407 (520)
Q Consensus       333 -~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~--~G~~v~~~gt~--~~~~~vd~~~~g~  407 (520)
                       ........|+++...+.++..+++.... .+++..++..++++.+.+.|.+  .++.+..+...  .+.+.+.+  .+.
T Consensus       223 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  299 (379)
T TIGR03402       223 GHQERGRRAGTENVPGIVGLGKAAELATE-HLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISF--EYI  299 (379)
T ss_pred             CccCCCcCCCCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEe--cCC
Confidence             0000112578899999999989887653 5566667788888888888874  47777653211  12333333  345


Q ss_pred             CHHHHHHHHhhcCeEEcCCC--CCCCCC------------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          408 DGARVEKILDMASITLNKNS--VPGDKS------------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       408 ~~~~~~~~L~~~gI~v~~~~--~Pg~~~------------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      ++.++...|++.||.++.+.  .++...            ...++.||+|++.+||    ++|++++++.|+++++.
T Consensus       300 ~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t----~~di~~~~~~l~~~~~~  372 (379)
T TIGR03402       300 EGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNT----EEDIDYVLEVLPPIIAR  372 (379)
T ss_pred             CHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCC----HHHHHHHHHHHHHHHHH
Confidence            77888889999999997542  111000            1124789999998876    89999999999987764

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.95  E-value=4.3e-26  Score=237.48  Aligned_cols=335  Identities=20%  Similarity=0.231  Sum_probs=230.2

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCC-CCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecC-ChHHHHHHHHHhhCC
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPL-SGSPANFEVYTAILK  181 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~-ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~-sGs~A~~~~l~all~  181 (520)
                      ++|+.|++++.+.+.+..  +.++. .|..+....+.++ .+++++++++|++..+   +|..+ ++++++..++.++++
T Consensus        11 ~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~---~v~~~~g~t~al~~~~~~~~~   84 (376)
T TIGR01977        11 PKPDEVYEAMADFYKNYG--GSPGRGRYRLALRASREVE-ETRQLLAKLFNAPSSA---HVVFTNNATTALNIALKGLLK   84 (376)
T ss_pred             CCCHHHHHHHHHHHHhcC--CCCCcccchHHHHHHHHHH-HHHHHHHHHhCcCCCC---eEEEeCCHHHHHHHHHHhccC
Confidence            478899999988775432  11221 1111111122222 4558899999987531   34445 455899999999999


Q ss_pred             CCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCH
Q 010008          182 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDY  259 (520)
Q Consensus       182 pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~  259 (520)
                      +||+|++.+++|+++.....    ......|.  +++.++++ +++.+|++++++.+++ +|++|+++.++|++  ..|+
T Consensus        85 ~gd~vl~~~~~~~~~~~~~~----~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~~~~-~~~~v~~~~~~n~tG~~~~~  156 (376)
T TIGR01977        85 EGDHVITTPMEHNSVARPLE----CLKEQIGV--EITIVKCD-NEGLISPERIKRAIKT-NTKLIVVSHASNVTGTILPI  156 (376)
T ss_pred             CCCEEEECcchhhHHHHHHH----HHHHHcCc--EEEEEecC-CCCCcCHHHHHHhcCC-CCeEEEEECCCCCccccCCH
Confidence            99999999877755421110    01112244  55666665 3578999999999977 89999998887775  7899


Q ss_pred             HHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhccc----
Q 010008          260 PRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNA----  334 (520)
Q Consensus       260 ~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~~~----  334 (520)
                      ++|.++|+++|+++++|++|+.|....+...   .++|++++|+|||+.||.| |+++.++..     ....+...    
T Consensus       157 ~~i~~l~~~~~~~livD~a~~~g~~~~~~~~---~~~D~~~~s~~K~l~~p~g~g~l~~~~~~-----~~~~~~~~~~~~  228 (376)
T TIGR01977       157 EEIGELAQENGIFFILDAAQTAGVIPIDMTE---LAIDMLAFTGHKGLLGPQGTGGLYIREGI-----KLKPLKSGGTGS  228 (376)
T ss_pred             HHHHHHHHHcCCEEEEEhhhccCccCCCchh---cCCCEEEecccccccCCCCceEEEEcCCc-----CcCceecCCCcc
Confidence            9999999999999999999998876444322   2699999999999999988 777766641     10100000    


Q ss_pred             -----------CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecCC-C--CCeeEE
Q 010008          335 -----------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGG-S--DNHLVL  399 (520)
Q Consensus       335 -----------~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~g-t--~~~~~~  399 (520)
                                 ......|+++...++++..+++.+.+.+.+...++..++++++.+.|.+ .|++++.+. .  ...++.
T Consensus       229 ~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~  308 (376)
T TIGR01977       229 HSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVS  308 (376)
T ss_pred             ccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEE
Confidence                       0011246788888999998999887777778888899999999999986 678877531 1  123344


Q ss_pred             EEecCCCCCHHHHHHHHhhc-CeEEcCCCCCCC-----CCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          400 VDLRPMGIDGARVEKILDMA-SITLNKNSVPGD-----KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       400 vd~~~~g~~~~~~~~~L~~~-gI~v~~~~~Pg~-----~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      +.+  .++++.++.+.|.+. ||.+..+..-..     .+....+.||+++..++|    ++|++++++.|++
T Consensus       309 ~~~--~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t----~~dv~~~~~~l~~  375 (376)
T TIGR01977       309 FTV--EGIDSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNT----EEEIEKLLEALSE  375 (376)
T ss_pred             EEE--CCCCHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCC----HHHHHHHHHHHhh
Confidence            444  456788898989876 999975421000     012245789999887655    8999999999875

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.95  E-value=4.6e-26  Score=225.62  Aligned_cols=334  Identities=20%  Similarity=0.246  Sum_probs=240.4

Q ss_pred             ccceEecCC--CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCC-CCCceeeecCChH-
Q 010008           94 KSLELIASE--NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQPLSGS-  169 (520)
Q Consensus        94 ~~i~Liase--n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~-~~~~~~V~~~sGs-  169 (520)
                      +.|.|-.++  -.++|.|++|+...+.+. ..|||.    ..    +.+-+..++|.++.++.+. .+|   |..+.|- 
T Consensus        26 DvlPmWVADMDf~~pp~i~~Al~~rvdhG-vfGY~~----~~----~~~~~ai~~w~~~r~~~~i~~e~---i~~~p~VV   93 (388)
T COG1168          26 DVLPMWVADMDFPTPPEIIEALRERVDHG-VFGYPY----GS----DELYAAIAHWFKQRHQWEIKPEW---IVFVPGVV   93 (388)
T ss_pred             CcceeeeecccCCCCHHHHHHHHHHHhcC-CCCCCC----CC----HHHHHHHHHHHHHhcCCCCCcce---EEEcCcch
Confidence            556776665  358999999999988766 348873    21    2333455689999998873 344   3334555 


Q ss_pred             HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCC--CCCCHHHHHHHhhhcCCcEEE
Q 010008          170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST--GLVDYDMLEKTAILFRPKLII  247 (520)
Q Consensus       170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~--~~iD~d~le~~i~~~~pklIi  247 (520)
                      .++..++.++.+|||.|++..|.|...        .+.+...|+  +++..|+..++  +.+|+++||+.+...++|+.+
T Consensus        94 pgi~~~I~~~T~~gd~Vvi~tPvY~PF--------~~~i~~n~R--~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~i  163 (388)
T COG1168          94 PGISLAIRALTKPGDGVVIQTPVYPPF--------YNAIKLNGR--KVIENPLVEDDGRYEIDFDALEKAFVDERVKLFI  163 (388)
T ss_pred             HhHHHHHHHhCcCCCeeEecCCCchHH--------HHHHhhcCc--EEEeccccccCCcEEecHHHHHHHHhcCCccEEE
Confidence            999999999999999999999876432        135666777  66666665444  577999999999887789999


Q ss_pred             EcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-----ccc--EEEeccCccc--CCCCce
Q 010008          248 AGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCD--VVTTTTHKSL--RGPRGG  313 (520)
Q Consensus       248 ~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-----~aD--iv~~S~hK~l--~GprgG  313 (520)
                      +++|+||+  ++   ++.+|.+||.+||+.||+|+.|. .++..|..+.|+.     .+|  ++++|.+|++  +|.+.+
T Consensus       164 LCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHa-Dlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a  242 (388)
T COG1168         164 LCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHA-DLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCA  242 (388)
T ss_pred             EeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccc-cccccCCCccchhhcChhhhcceEEEeeccccccchhhhhe
Confidence            99999996  44   57888899999999999999984 6777764333332     345  7778899986  788888


Q ss_pred             EEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH--CCCEEecC
Q 010008          314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE--LGYKLVSG  391 (520)
Q Consensus       314 ~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~--~G~~v~~~  391 (520)
                      .++..++     ++..+..+..-...+++|+...+.|..+|.++- .++.++..+.+.+|++++.+.|.+  .++++..+
T Consensus       243 ~~Ii~n~-----~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G-~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~~p  316 (388)
T COG1168         243 YIIISNR-----ELRAKFLKRLKRNGLHGPSALGIIATEAAYNQG-EPWLDELLEYLKDNRDYVADFLNKHLPGVKVTEP  316 (388)
T ss_pred             eEEecCH-----HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEecC
Confidence            7777664     554443332223346778887887777788764 345688889999999999999988  48998765


Q ss_pred             CCCCeeEEEEecCCCCCHHHHHH-HHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHH
Q 010008          392 GSDNHLVLVDLRPMGIDGARVEK-ILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIAD  462 (520)
Q Consensus       392 gt~~~~~~vd~~~~g~~~~~~~~-~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~  462 (520)
                       ..+++.|+|++..+++..++++ +|++++|.++.+...|   +.+.+.+|+-.  .|+|...++.+++++.
T Consensus       317 -~gTYL~WLD~r~l~l~d~~l~~~ll~~akVal~~G~~FG---~~g~gf~RlN~--acpr~~L~eal~ri~~  382 (388)
T COG1168         317 -QGTYLAWLDCRELGLDDSELAEFLLEEAKVALSPGSTFG---EEGSGFVRLNF--ACPRAILEEALERLKR  382 (388)
T ss_pred             -CCceeeeeeccccCCChHHHHHHHHHhhcEeccCCCccC---cCCCceEEEec--CCCHHHHHHHHHHHHH
Confidence             2468899999999998766555 5678999998765443   34567899853  3334333444444443

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.95  E-value=8.4e-26  Score=237.44  Aligned_cols=333  Identities=16%  Similarity=0.144  Sum_probs=239.5

Q ss_pred             ceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHH
Q 010008           96 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV  175 (520)
Q Consensus        96 i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~  175 (520)
                      +.++++...+++.|++++...+.+..           ...+. ++-+.++++++++||++.++  ..+.+++|++++.++
T Consensus        11 ~l~~pGP~~~~~~V~~a~~~~~~~~~-----------~~~~~-~~~~~~~~~l~~~~g~~~~~--~vi~~~~gt~a~~~a   76 (401)
T PLN02409         11 HLFVPGPVNIPERVLRAMNRPNEDHR-----------SPAFP-ALTKELLEDVKYIFKTKSGT--PFIFPTTGTGAWESA   76 (401)
T ss_pred             eeccCCCCCCCHHHHHHhcCCCCCCC-----------CHHHH-HHHHHHHHHHHHHhCCCCCC--EEEEeCCcHHHHHHH
Confidence            45677888899999999976543221           12233 34446778999999997643  245667788999999


Q ss_pred             HHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh---cCCcEEEEcCCC
Q 010008          176 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLIIAGASA  252 (520)
Q Consensus       176 l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~---~~pklIi~~~s~  252 (520)
                      +..+++|||+|++.++.+.+.   .+.   ......|.  +++.++.+. +..+|++++++.+++   .++|+|+++++.
T Consensus        77 ~~~~~~~Gd~Vlv~~~~~~~~---~~~---~~~~~~g~--~v~~v~~~~-~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~  147 (401)
T PLN02409         77 LTNTLSPGDKVVSFRIGQFSL---LWI---DQMQRLNF--DVDVVESPW-GQGADLDILKSKLRQDTNHKIKAVCVVHNE  147 (401)
T ss_pred             HHhcCCCCCEEEEeCCCchhH---HHH---HHHHHcCC--ceEEEECCC-CCCCCHHHHHHHHhhCcCCCccEEEEEeec
Confidence            999999999999998755332   110   12233454  555555553 345899999999986   378999998776


Q ss_pred             CCC--CCCHHHHHHH--HHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhH
Q 010008          253 YPR--DFDYPRMRQI--ADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL  327 (520)
Q Consensus       253 ~p~--~~d~~~i~~i--a~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l  327 (520)
                      |++  ..|+++|.++  |+++|+++++|++|+.|....+....   ++|++++|+||||.||.| |+++.++      +.
T Consensus       148 ~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~---~~D~~~~s~~K~l~~P~G~G~l~~~~------~~  218 (401)
T PLN02409        148 TSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMDEW---GVDVALTGSQKALSLPTGLGIVCASP------KA  218 (401)
T ss_pred             ccccccCCHHHHHHHHhhhccCcEEEEEcccccCCcccccccc---CccEEEEcCccccCcCCCcceeEECH------HH
Confidence            665  8899999999  99999999999998877553322111   589999999999999877 9999887      44


Q ss_pred             HHhhcccC----C-----------CC--CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEec
Q 010008          328 ESAINNAV----F-----------PG--LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVS  390 (520)
Q Consensus       328 ~~~i~~~~----~-----------p~--~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~  390 (520)
                      .+++....    +           .+  ..++|+.+.+.++..|++.+.+.+++...++..+.++++.+.|.+.|++++.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~g~~~~~  298 (401)
T PLN02409        219 LEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAWGLKLCT  298 (401)
T ss_pred             HHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeecc
Confidence            44433210    0           00  1347888889999999998777778888899999999999999888999876


Q ss_pred             CCCC--C-eeEEEEecCCCCCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          391 GGSD--N-HLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       391 ~gt~--~-~~~~vd~~~~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      +...  . .+.++.+ +.+++..++.+.| ++.||.+..+.     ++.....||||+...++    ++|+..+.+++.+
T Consensus       299 ~~~~~~s~~v~~~~~-p~~~~~~~l~~~l~~~~~i~i~~G~-----~~~~~~~~Rig~~g~~~----~~~~~~~~~~~~~  368 (401)
T PLN02409        299 KKPEWRSDTVTAVVV-PEGIDSAEIVKNAWKKYNLSLGLGL-----NKVAGKVFRIGHLGNVN----ELQLLGALAGVEM  368 (401)
T ss_pred             CChhhcccceEEEeC-CCCCCHHHHHHHHHHhCCEEEEcCC-----CcccCCEEEEcCCCCCC----HHHHHHHHHHHHH
Confidence            4211  1 2233433 3567777776554 68899995432     23345789999987654    8999999999999


Q ss_pred             HHHH
Q 010008          467 GVEI  470 (520)
Q Consensus       467 ~l~~  470 (520)
                      ++..
T Consensus       369 ~l~~  372 (401)
T PLN02409        369 VLKD  372 (401)
T ss_pred             HHHH
Confidence            8864

>PRK02948 cysteine desulfurase; Provisional

Probab=99.95  E-value=4.5e-26  Score=237.99  Aligned_cols=340  Identities=14%  Similarity=0.143  Sum_probs=234.6

Q ss_pred             cCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHh
Q 010008          100 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTA  178 (520)
Q Consensus       100 asen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~a  178 (520)
                      ++..++|+.|++++...+...+  +.|+..+..+....+.++ .+++.+++++|++++    +|..++|+ +++..++.+
T Consensus         7 a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~r~~la~~~g~~~~----~i~~~~g~t~a~~~~~~~   79 (381)
T PRK02948          7 AATTPMSKEALQTYQKAASQYF--GNESSLHDIGGTASSLLQ-VCRKTFAEMIGGEEQ----GIYFTSGGTESNYLAIQS   79 (381)
T ss_pred             CCCCCCCHHHHHHHHHHHHhcC--CCCccccHHHHHHHHHHH-HHHHHHHHHhCCCCC----eEEEeCcHHHHHHHHHHH
Confidence            4556889999999988776543  334434444444444444 577899999999875    45556664 898888877


Q ss_pred             hC----CCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC
Q 010008          179 IL----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP  254 (520)
Q Consensus       179 ll----~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p  254 (520)
                      ++    ++||+|++.+.+|.+.....     ..+...|.  ++..++++ +++.+|++++++.+++ ++++|++++++||
T Consensus        80 ~~~~~~~~g~~vv~~~~~h~s~~~~~-----~~~~~~g~--~v~~v~~~-~~~~~d~~~l~~~l~~-~~~lv~~~~~~n~  150 (381)
T PRK02948         80 LLNALPQNKKHIITTPMEHASIHSYF-----QSLESQGY--TVTEIPVD-KSGLIRLVDLERAITP-DTVLASIQHANSE  150 (381)
T ss_pred             HHHhccCCCCEEEECCcccHHHHHHH-----HHHHhCCC--EEEEEeeC-CCCCCCHHHHHHhcCC-CCEEEEEECCcCC
Confidence            75    67999999887765442211     11223454  55555565 4578999999999977 8999999988887


Q ss_pred             C--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhh
Q 010008          255 R--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI  331 (520)
Q Consensus       255 ~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i  331 (520)
                      +  ..|+++|.++|+++|+++++|++|..|....+....   ++|++++|+||++ ||.| |+++.+++.    .+ ..+
T Consensus       151 tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~~~~~---~~d~~~~s~~K~~-gp~G~G~l~~~~~~----~~-~~~  221 (381)
T PRK02948        151 IGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPIDVFEM---GIDSLSVSAHKIY-GPKGVGAVYINPQV----RW-KPV  221 (381)
T ss_pred             cEeehhHHHHHHHHHHcCCEEEEEChhhccccccCcccC---CCCEEEecHHhcC-CCCcEEEEEEcCCC----CC-CCc
Confidence            6  889999999999999999999998877543332221   5899999999965 6877 999888741    01 111


Q ss_pred             cc---cCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCe-e-EEEEecCCC
Q 010008          332 NN---AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH-L-VLVDLRPMG  406 (520)
Q Consensus       332 ~~---~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~-~-~~vd~~~~g  406 (520)
                      ..   .......|+++...++++..+++... .+.++..+++.++++++.+.|++.|+++...+..++ + .++.+...+
T Consensus       222 ~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~i~~~~~~~  300 (381)
T PRK02948        222 FPGTTHEKGFRPGTVNVPGIAAFLTAAENIL-KNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTIKG  300 (381)
T ss_pred             ccCCCCCCCcCCCCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCccCcCCEEEEEeCC
Confidence            00   00112356788888888888888764 355777888999999999999988876653321121 1 123333345


Q ss_pred             CCHHHHHHHHhhcCeEEcCCCC-------CCC-------CCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          407 IDGARVEKILDMASITLNKNSV-------PGD-------KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       407 ~~~~~~~~~L~~~gI~v~~~~~-------Pg~-------~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ++++++...|++.||.++.+..       |..       ..+...+.+|||+..++|    ++|++++.+.|.++++
T Consensus       301 ~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t----~~di~~l~~~l~~~~~  373 (381)
T PRK02948        301 IEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTT----KDQIDTTIHALETIGN  373 (381)
T ss_pred             CCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCC----HHHHHHHHHHHHHHHH
Confidence            5677777788899999975421       100       001124689999887665    8999999999998765

>PLN00175 aminotransferase family protein; Provisional

Probab=99.95  E-value=1.2e-25  Score=237.00  Aligned_cols=359  Identities=13%  Similarity=0.094  Sum_probs=239.6

Q ss_pred             hhhccccChHHHHHHHHHHHHhhccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHH
Q 010008           71 DYSLGEADPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA  148 (520)
Q Consensus        71 ~~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~  148 (520)
                      .+++....++.+..+.+... ..+.|+|..++.  .+++.+.+++...+.+.. ..|+.      .....++++...+++
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~G~P~~~~~~~~~~~~~~~~~~~~-~~Y~~------~~G~~~Lr~aia~~~  104 (413)
T PLN00175         33 AKRLEKFKTTIFTQMSSLAI-KHGAINLGQGFPNFDGPDFVKEAAIQAIRDGK-NQYAR------GFGVPELNSAIAERF  104 (413)
T ss_pred             hHHhhcCCCCHHHHHHHHhh-cCCeEecCCCCCCCCCCHHHHHHHHHHHhcCC-CCcCC------CCCCHHHHHHHHHHH
Confidence            45566666666655544332 236788876653  357888999887776421 23332      122345666666788


Q ss_pred             HHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCC
Q 010008          149 LAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG  227 (520)
Q Consensus       149 ~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~  227 (520)
                      .+.+|.+.+. ..+|.+|+|+ +|+..++.++++|||+|++++|.|..+.        ..+...|.  +++.++++++++
T Consensus       105 ~~~~g~~~~~-~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~--------~~~~~~g~--~~~~v~~~~~~~  173 (413)
T PLN00175        105 KKDTGLVVDP-EKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYE--------ATLSMAGA--KIKTVTLRPPDF  173 (413)
T ss_pred             HHHhCCCCCC-CCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHH--------HHHHHcCC--EEEEEECCcccC
Confidence            8888865321 0146668887 8999999999999999999998775542        12344565  666777765568


Q ss_pred             CCCHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCC--CCc---cc
Q 010008          228 LVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADP--FKY---CD  297 (520)
Q Consensus       228 ~iD~d~le~~i~~~~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p--~~~---aD  297 (520)
                      .+|+++|++.+.+ ++|+|++++++||+  ..   ++++|.++|+++|+++|+|+++ ..+.+.+.+.+.  +.+   ..
T Consensus       174 ~~~~~~l~~~~~~-~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y-~~l~~~~~~~s~~~~~~~~~~v  251 (413)
T PLN00175        174 AVPEDELKAAFTS-KTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVY-DKLAFEGDHISMASLPGMYERT  251 (413)
T ss_pred             CCCHHHHHHhcCc-CceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEeccc-CccccCCcccChhhCCCCcCcE
Confidence            8999999999987 89999999999997  44   4778899999999999999984 455543322111  111   23


Q ss_pred             EEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q 010008          298 VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCR  375 (520)
Q Consensus       298 iv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~  375 (520)
                      |++.|++|++  +|+|.||+++++      ++.+.+.........+.+...+.++ +.+|+.. ...+++..+++.++++
T Consensus       252 i~i~SfSK~~~~~G~RiG~~v~~~------~l~~~l~~~~~~~~~~~s~~~Q~a~-~~~l~~~-~~~~~~~~~~~~~~~~  323 (413)
T PLN00175        252 VTMNSLGKTFSLTGWKIGWAIAPP------HLTWGVRQAHSFLTFATATPMQWAA-VAALRAP-ESYYEELKRDYSAKKD  323 (413)
T ss_pred             EEEecchhhccCcchheeeeEeCH------HHHHHHHHHHhhccCCCCHHHHHHH-HHHHhCC-HHHHHHHHHHHHHHHH
Confidence            7889999986  789999999987      5666554432111223333434333 3455431 1234677888899999


Q ss_pred             HHHHHHHHCCCEEecCCCCCeeEEEEecCCCC-CHHHHH-HHHhhcCeEEcCCCCCCCC-C---CCCCCEEEEccCCccc
Q 010008          376 ALASRLVELGYKLVSGGSDNHLVLVDLRPMGI-DGARVE-KILDMASITLNKNSVPGDK-S---ALVPGGIRIGSPAMTT  449 (520)
Q Consensus       376 ~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~-~~~~~~-~~L~~~gI~v~~~~~Pg~~-~---~~~~~giRig~~~~tt  449 (520)
                      .+.+.|.+.|+.+..+ ..++++|+++.+.++ +..++. .++++.||.+    .||.. .   ....++|||++.    
T Consensus       324 ~l~~~L~~~g~~~~~p-~g~~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v----~pg~~F~~~~~~~~~~iRls~~----  394 (413)
T PLN00175        324 ILVEGLKEVGFKVYPS-SGTYFVMVDHTPFGFENDIAFCEYLIEEVGVAA----IPPSVFYLNPEDGKNLVRFAFC----  394 (413)
T ss_pred             HHHHHHHHCCCeecCC-CeeEEEEEeccccCCCCHHHHHHHHHHhCCEEE----eCchHhCCCCCCCCCEEEEEEc----
Confidence            9999999888887654 335677888754444 344554 4557889999    45532 1   123468999864    


Q ss_pred             cCCCHHHHHHHHHHHHHHHH
Q 010008          450 RGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       450 ~g~~~~d~~~la~~i~~~l~  469 (520)
                        ..++++++.++.|.+.++
T Consensus       395 --~~~e~l~~~~~rL~~~~~  412 (413)
T PLN00175        395 --KDEETLRAAVERMKTKLK  412 (413)
T ss_pred             --CCHHHHHHHHHHHHHHHh
Confidence              247889988888887664

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.95  E-value=7.8e-26  Score=237.37  Aligned_cols=312  Identities=20%  Similarity=0.267  Sum_probs=223.2

Q ss_pred             CCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccc
Q 010008          131 YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSG  210 (520)
Q Consensus       131 y~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~  210 (520)
                      |++.....++|    +.++++||.+.     .|.+++|+.|+..++.++++|||+|+ +++.+..+        ...+..
T Consensus        49 Y~~~~g~~~Le----eaia~~~g~~~-----vv~t~~Gt~Al~la~~al~~pGD~V~-~~~~f~~~--------~~~i~~  110 (431)
T cd00617          49 YAGSKSFYDLE----DAVQDLFGFKH-----IIPTHQGRGAENILFSILLKPGRTVP-SNMHFDTT--------RGHIEA  110 (431)
T ss_pred             cCCCCCHHHHH----HHHHHHHCCCe-----EEEcCCHHHHHHHHHHHhCCCCCEEc-cCCcccch--------HHHHHh
Confidence            44444566777    56778899875     25567888999999999999999884 55433222        123455


Q ss_pred             ccceEEEEEcccCCC---------CCCCCHHHHHHHhhhc---CCcEEEEcCCCCCC---CC---CHHHHHHHHHHhCCE
Q 010008          211 TSIYFESMPYRLDES---------TGLVDYDMLEKTAILF---RPKLIIAGASAYPR---DF---DYPRMRQIADAVGAL  272 (520)
Q Consensus       211 ~g~~~~~v~~~~d~~---------~~~iD~d~le~~i~~~---~pklIi~~~s~~p~---~~---d~~~i~~ia~~~g~~  272 (520)
                      .|.  +++.++++++         ++.+|+++|++++++.   ++++|+++.|+||+   ..   ++++|+++|++||++
T Consensus       111 ~Ga--~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~  188 (431)
T cd00617         111 NGA--VPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIP  188 (431)
T ss_pred             CCC--EeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence            665  6777766532         3569999999999863   37889998888863   44   466889999999999


Q ss_pred             EEEechhhccccc------ccccCCC--------CCcccEEEeccCcccCCCCceEEEeeCCCcchhhHHHhhcccC--C
Q 010008          273 LMMDMAHISGLVA------ASVVADP--------FKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAV--F  336 (520)
Q Consensus       273 li~D~Ah~~gli~------~~~~~~p--------~~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i~~~~--~  336 (520)
                      ||.|+||..+-..      .+....+        +.++|.+++|+||.+.++-||+++++++     ++.++++...  +
T Consensus       189 li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~GG~i~~~d~-----~l~~~~~~~~~~~  263 (431)
T cd00617         189 VVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNIGGFLALRDD-----ELYEEARQRVVLY  263 (431)
T ss_pred             EEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCccceEEEeCcH-----HHHHHHHHhcccc
Confidence            9999998765221      1222222        2378999999999988888999999984     5777665422  2


Q ss_pred             CC--CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCC-------CC
Q 010008          337 PG--LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM-------GI  407 (520)
Q Consensus       337 p~--~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~-------g~  407 (520)
                      .+  ..|+.+...++|++++|++..+   .++.++..+++++|.+.|.+.|++++.+ ...|++++|+...       +.
T Consensus       264 ~~~~~~gG~~~r~~~A~A~gL~e~~~---~~~l~~~~~~r~~l~~~L~~~G~~v~~P-~Ggh~v~~d~~~~~~~~~~~~~  339 (431)
T cd00617         264 EGFVTYGGMAGRDMEALAQGLREAVE---EDYLRHRVEQVRYLGDRLDEAGVPIVEP-AGGHAVFIDAREFLPHIPQEQF  339 (431)
T ss_pred             CCccccccccHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHCCCCccCC-CcceEEEEEhHHhcCCCCcccC
Confidence            22  2467777788888888877433   3556667778899999999999998875 3569999998642       12


Q ss_pred             CHHH-HHHHHhhcCeEEc-CCCC--CCCCC-----CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHHHHH
Q 010008          408 DGAR-VEKILDMASITLN-KNSV--PGDKS-----ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEA  474 (520)
Q Consensus       408 ~~~~-~~~~L~~~gI~v~-~~~~--Pg~~~-----~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~~~~  474 (520)
                      ++.. +.+++++.||.+. .+++  +.|..     ......+|+++|   +|++|.++|+++++.|.+++++...+
T Consensus       340 ~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~p---rr~~t~~~~~~~~~~~~~~~~~~~~~  412 (431)
T cd00617         340 PAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIP---RRVYTQDHMDYVAAAVIALYERREDI  412 (431)
T ss_pred             cHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEecc---ccccCHHHHHHHHHHHHHHHhhHhhC
Confidence            3444 5578899999964 3321  33321     112368999988   78999999999999999999886544

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.95  E-value=5.9e-26  Score=236.32  Aligned_cols=332  Identities=21%  Similarity=0.232  Sum_probs=231.7

Q ss_pred             cCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCC-CCCceeeecCChHHHHHHHHHh
Q 010008          100 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQPLSGSPANFEVYTA  178 (520)
Q Consensus       100 asen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~-~~~~~~V~~~sGs~A~~~~l~a  178 (520)
                      ++..++|+.|++++...+.+.+..+..+. +..+.++.+.++ .+++.+++++|+++ ++   .+...+++.++..++.+
T Consensus         6 ~~~~~~p~~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~r~~la~~lg~~~~~~---v~~~~~~t~a~~~~~~~   80 (371)
T PF00266_consen    6 AGTGPMPKSVLEAISDYLRNFYANPHSGV-SHRSREFAEILE-EAREALAKLLGAPPDEE---VVFTSNGTEALNAVASS   80 (371)
T ss_dssp             SSS-B-BHHHHHHHHHHHHHSGSSTSTSS-STTSHHHHHHHH-HHHHHHHHHHTSSTTEE---EEEESSHHHHHHHHHHH
T ss_pred             CCccCCCHHHHHHHHHHHHHhhhcCcccc-cchhhhhhHHHH-HHHHHHHHhcCCccccc---cccccccchhhhhhhhc
Confidence            56678999999999998887765432222 233444455555 67899999999998 42   23345566899999999


Q ss_pred             h---CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC--C
Q 010008          179 I---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA--Y  253 (520)
Q Consensus       179 l---l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~--~  253 (520)
                      +   +++||+|++.+.+|.+......    ......|.  ++..++.+ .++.+|++++++.+++ ++++|++....  .
T Consensus        81 l~~~~~~g~~vl~~~~~~~s~~~~~~----~~~~~~g~--~v~~i~~~-~~~~~~~~~~~~~l~~-~~~lv~~~~~~~~t  152 (371)
T PF00266_consen   81 LLNPLKPGDEVLVTSNEHPSNRYPWE----EIAKRKGA--EVRVIPAD-PGGSLDLEDLEEALNP-DTRLVSISHVENST  152 (371)
T ss_dssp             HHHHGTTTCEEEEEESSHHHHHHHHH----HHHHHTTE--EEEEEEEG-TTSSCSHHHHHHHHHT-TESEEEEESBETTT
T ss_pred             cccccccccccccccccccccccccc----cccccchh--hhcccccc-ccchhhhhhhhhhhcc-ccceEEeecccccc
Confidence            9   8999999999887765531111    01123454  44444554 4578999999999986 99999988543  3


Q ss_pred             CCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhc
Q 010008          254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAIN  332 (520)
Q Consensus       254 p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~  332 (520)
                      +...|+++|.++|+++|+++++|++|+.|.+..+....   ++|++++|+|| |.||+| |+++.++      +..++++
T Consensus       153 G~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~---~~D~~~~s~~K-l~gp~G~g~l~v~~------~~~~~~~  222 (371)
T PF00266_consen  153 GVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPIDLDEL---GADFLVFSSHK-LGGPPGLGFLYVRP------EAIERLR  222 (371)
T ss_dssp             TBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS--TTTT---TESEEEEESTS-TTSSSTEEEEEEEH------HHHHHHH
T ss_pred             cEEeeeceehhhhhccCCceeEechhcccccccccccc---ccceeeecccc-cCCCCchhhheehh------hhhhccc
Confidence            44889999999999999999999999998875443322   69999999999 999998 9999998      3433332


Q ss_pred             ccC--------------------CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecC
Q 010008          333 NAV--------------------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSG  391 (520)
Q Consensus       333 ~~~--------------------~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~  391 (520)
                      ...                    .....|+++...+.++..+++.+...+.+...++..+.++++.+.|.+. ++.++.+
T Consensus       223 p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~  302 (371)
T PF00266_consen  223 PAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEVLGP  302 (371)
T ss_dssp             TSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSS
T ss_pred             cccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEeee
Confidence            211                    1123578999999999999998865667888888999999999999885 4555442


Q ss_pred             ---CCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCC---CCCCCCCCEEEEccCCccccCCCHHHHHHH
Q 010008          392 ---GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG---DKSALVPGGIRIGSPAMTTRGFSEKEFVAI  460 (520)
Q Consensus       392 ---gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg---~~~~~~~~giRig~~~~tt~g~~~~d~~~l  460 (520)
                         ...+.++.+.+  .+.++..+.+.|++.||.+..+..-.   .......++||+|.+.++|    ++|++++
T Consensus       303 ~~~~~~~~i~~~~~--~~~~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt----~~dv~~l  371 (371)
T PF00266_consen  303 DDEPRRPSIVSFNL--PGSDADDVVKYLEERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNT----EEDVDRL  371 (371)
T ss_dssp             SCGGBGTTEEEEEE--TTSSHHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSS----HHHHHHH
T ss_pred             cccccccceEEEee--cCCCHHHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCC----HHHHhhC
Confidence               12234445555  46688999999999999996531000   0000013799999988876    8999875

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.95  E-value=3e-25  Score=231.92  Aligned_cols=340  Identities=17%  Similarity=0.218  Sum_probs=234.0

Q ss_pred             cCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC-CCCCCceeeecCChH-HHHHHHHH
Q 010008          100 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQPLSGS-PANFEVYT  177 (520)
Q Consensus       100 asen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~-~~~~~~~~V~~~sGs-~A~~~~l~  177 (520)
                      ++..++++.|++++...+.+.|  +.|+..+..+....+.+++ +++.+.+.+|+ +++    +|.+++|+ +++..++.
T Consensus         6 aa~~~~~~~v~~~~~~~~~~~~--~n~~~~~~~~~~~~~~l~~-a~~~~~~~~~~~~~~----~i~~t~g~teal~~~~~   78 (382)
T TIGR03403         6 NATTMLDPKVKELMDPFFCDIY--GNPNSLHQFGTATHPAIAE-ALDKLYKGINARDLD----DIIITSCATESNNWVLK   78 (382)
T ss_pred             cCCCCCCHHHHHHHHHHHHhcC--cCCccccHHHHHHHHHHHH-HHHHHHHHcCcCCCC----eEEEeCCHHHHHHHHHH
Confidence            3456788999999998887765  3454333333444556664 45566677887 454    45556666 89988888


Q ss_pred             hhC-----CC-CCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCC
Q 010008          178 AIL-----KP-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS  251 (520)
Q Consensus       178 all-----~p-GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s  251 (520)
                      ++.     ++ +|+|++.+.+|.+......     .+...|.  +++.++++ +++.+|++++++.+++ +++++++.++
T Consensus        79 ~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~-----~~~~~G~--~v~~v~~~-~~g~~d~~~l~~~i~~-~t~lv~~~~~  149 (382)
T TIGR03403        79 GVYFDEILKGGKNHIITTEVEHPAVRATCA-----FLESLGV--EVTYLPIN-EQGTITAEQVREAITE-KTALVSVMWA  149 (382)
T ss_pred             HHHHhhcccCCCCEEEEcCCccHHHHHHHH-----HHHHCCC--EEEEEecC-CCCCCCHHHHHHhccc-CCeEEEEEcc
Confidence            762     56 4789998887765432211     1223354  56666676 4578999999999987 8999999888


Q ss_pred             CCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHH
Q 010008          252 AYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE  328 (520)
Q Consensus       252 ~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~  328 (520)
                      +||+  ..|+++|.++|+++|+++++|++|..|.+..+...   .++|++++|+||+ .||.| |+++.+++.    .+.
T Consensus       150 ~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~---~~~D~~~~s~~K~-~gp~G~g~l~vr~~~----~~~  221 (382)
T TIGR03403       150 NNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVDVQK---AGVDFLSFSAHKF-HGPKGVGGLYIRKGV----ELT  221 (382)
T ss_pred             cCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCccCccc---cCCCEEEEcchhh-CCCCceEEEEECCCC----CCC
Confidence            8876  78999999999999999999999887755332211   1689999999997 57887 999888742    111


Q ss_pred             Hhhc--ccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecCCC--CCeeEEEEec
Q 010008          329 SAIN--NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGS--DNHLVLVDLR  403 (520)
Q Consensus       329 ~~i~--~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~gt--~~~~~~vd~~  403 (520)
                      ..+.  ........|+++...+.+++.+++...+ ..+...+++...++++.+.|.+ .|+.++.+..  ..+++.+.+ 
T Consensus       222 p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~-  299 (382)
T TIGR03403       222 PLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANE-YLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISI-  299 (382)
T ss_pred             CcccCCCCCCCcccCCcChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEe-
Confidence            1110  0001112577888888888888876542 3466667888888889999977 5788876421  123445554 


Q ss_pred             CCCCCHHHHHHHHhhcCeEEcCCC-C-CCCC------------CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          404 PMGIDGARVEKILDMASITLNKNS-V-PGDK------------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       404 ~~g~~~~~~~~~L~~~gI~v~~~~-~-Pg~~------------~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                       .++++..+...|.+.||.++.++ + ++..            .....+.||+|++.+||    ++|++++++.|+++++
T Consensus       300 -~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t----~~did~~~~~l~~~~~  374 (382)
T TIGR03403       300 -KGVEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTT----EEEIDYTIEVFKKAVQ  374 (382)
T ss_pred             -CCCCHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCC----HHHHHHHHHHHHHHHH
Confidence             35678888888999999998642 1 0100            01123679999998776    8999999999998876


Q ss_pred             H
Q 010008          470 I  470 (520)
Q Consensus       470 ~  470 (520)
                      .
T Consensus       375 ~  375 (382)
T TIGR03403       375 R  375 (382)
T ss_pred             H
Confidence            4

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PLN02651 cysteine desulfurase

Probab=99.95  E-value=1.3e-25  Score=233.07  Aligned_cols=324  Identities=17%  Similarity=0.208  Sum_probs=223.4

Q ss_pred             cCCCCChHHHHHHHhhhhhccCCCCCCCC-CCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHh
Q 010008          100 ASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA  178 (520)
Q Consensus       100 asen~~~~~V~ea~~s~l~~~y~~G~p~~-ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~a  178 (520)
                      ++..++|+.|++++...+.+.+  +.|+. .+..+.+..+.++ .+++++++++|++++++   +...+|++++..++.+
T Consensus         6 a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~r~~la~~~g~~~~~v---~~t~~~t~a~~~~l~~   79 (364)
T PLN02651          6 QATTPIDPRVLDAMLPFLIEHF--GNPHSRTHLYGWESEDAVE-KARAQVAALIGADPKEI---IFTSGATESNNLAIKG   79 (364)
T ss_pred             cCCCCCCHHHHHHHHHHHHhCC--CCCChhhhHHHHHHHHHHH-HHHHHHHHHhCCCCCeE---EEeCCHHHHHHHHHHH
Confidence            4556889999999998876544  44442 1111233334444 56789999999987532   2234455887776655


Q ss_pred             h----CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC
Q 010008          179 I----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP  254 (520)
Q Consensus       179 l----l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p  254 (520)
                      +    .++||+|++.+.+|.+.....     ..+...|.  +++.++++ +++.+|++++++++++ +++++++..++|+
T Consensus        80 ~~~~~~~~g~~vl~~~~~h~s~~~~~-----~~~~~~g~--~v~~v~~~-~~~~~d~~~l~~~i~~-~t~lv~v~~~~n~  150 (364)
T PLN02651         80 VMHFYKDKKKHVITTQTEHKCVLDSC-----RHLQQEGF--EVTYLPVK-SDGLVDLDELAAAIRP-DTALVSVMAVNNE  150 (364)
T ss_pred             HHHhccCCCCEEEEcccccHHHHHHH-----HHHHhcCC--EEEEEccC-CCCcCCHHHHHHhcCC-CcEEEEEECCCCC
Confidence            4    578999999887775532111     01122343  55555665 4678999999999987 8999999877766


Q ss_pred             C--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhh
Q 010008          255 R--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI  331 (520)
Q Consensus       255 ~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i  331 (520)
                      +  ..|+++|.++|+++|+++++|++|+.|.+..++...   ++|++++|+||| .||.| |+++.+++      ...++
T Consensus       151 tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~~~~~---~~D~~~~s~hK~-~gp~G~g~l~v~~~------~~~~l  220 (364)
T PLN02651        151 IGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVDVDDL---GVDLMSISGHKI-YGPKGVGALYVRRR------PRVRL  220 (364)
T ss_pred             ceecccHHHHHHHHHHcCCEEEEEcchhhCCcccCcccC---CCCEEEechhhh-CCCCceEEEEEcCC------CCCCC
Confidence            5  889999999999999999999999988765443222   589999999997 68988 99999874      22222


Q ss_pred             cccCC------CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH--CCCEEecCC-CC---CeeEE
Q 010008          332 NNAVF------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE--LGYKLVSGG-SD---NHLVL  399 (520)
Q Consensus       332 ~~~~~------p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~--~G~~v~~~g-t~---~~~~~  399 (520)
                      .....      ....|+++...++++..|++.+.. +.++..++..+.++++.+.|.+  .|++++.+. .+   .+++.
T Consensus       221 ~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~-~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~  299 (364)
T PLN02651        221 EPLMSGGGQERGRRSGTENTPLVVGLGAACELAMK-EMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLN  299 (364)
T ss_pred             CccccCCCccCCccCCCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEE
Confidence            22111      123688999999999999988764 4466677788888888888875  388888742 11   23444


Q ss_pred             EEecCCCCCHHHHHHHHhhcCeEEcCCCC--CCC-----C----C---CCCCCEEEEccCCccccCCCHHHH
Q 010008          400 VDLRPMGIDGARVEKILDMASITLNKNSV--PGD-----K----S---ALVPGGIRIGSPAMTTRGFSEKEF  457 (520)
Q Consensus       400 vd~~~~g~~~~~~~~~L~~~gI~v~~~~~--Pg~-----~----~---~~~~~giRig~~~~tt~g~~~~d~  457 (520)
                      +.+  .+++++++.+.|.+  |.++.+..  ++.     .    +   ....+.+|+|+..+||    ++|+
T Consensus       300 ~~~--~~~~~~~~~~~L~~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t----~~di  363 (364)
T PLN02651        300 LSF--AYVEGESLLMGLKE--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTT----EEEV  363 (364)
T ss_pred             EEe--CCCCHHHHHHHhCC--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCC----HHHc
Confidence            444  46788888888876  88865431  110     0    0   0124789999998887    5665

>PRK08960 hypothetical protein; Provisional

Probab=99.94  E-value=9.5e-25  Score=228.56  Aligned_cols=336  Identities=13%  Similarity=0.111  Sum_probs=217.7

Q ss_pred             hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceeeecCCh
Q 010008           93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSG  168 (520)
Q Consensus        93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V~~~sG  168 (520)
                      .+.|+|..+++.  +|+.+++++.+.+.+.. .+|+.      ....+++++...+++.+.+|.  +++    +|.+++|
T Consensus        32 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~-~~Y~~------~~g~~~lr~~ia~~~~~~~g~~~~~~----~i~it~G  100 (387)
T PRK08960         32 HDVIHLEIGEPDFTTAEPIVAAGQAALAAGH-TRYTA------ARGLPALREAIAGFYAQRYGVDVDPE----RILVTPG  100 (387)
T ss_pred             CCeEEeCCCCCCCCCCHHHHHHHHHHHhcCC-CccCC------CCCCHHHHHHHHHHHHHHhCCCCChh----hEEEccC
Confidence            356888887753  68999999988876431 12322      112345555555677766665  444    5667888


Q ss_pred             H-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEE
Q 010008          169 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       169 s-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklI  246 (520)
                      + +|+..++.++++|||+|++++|+|.++..        .+...|.  +++.++++.+ ++.+|++++++++++ +++++
T Consensus       101 ~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~~~~-~~~~i  169 (387)
T PRK08960        101 GSGALLLASSLLVDPGKHWLLADPGYPCNRH--------FLRLVEG--AAQLVPVGPDSRYQLTPALVERHWNA-DTVGA  169 (387)
T ss_pred             cHHHHHHHHHHhcCCCCEEEEcCCCCcchHH--------HHHhcCC--eEEEEecCcccCCCCCHHHHHHHhCc-cceEE
Confidence            7 99999999999999999999998876542        2233455  5555566544 357999999998887 78888


Q ss_pred             EEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-ccc-EEEeccCccc--CCCCceEEEe
Q 010008          247 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCD-VVTTTTHKSL--RGPRGGMIFF  317 (520)
Q Consensus       247 i~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aD-iv~~S~hK~l--~GprgG~I~~  317 (520)
                      +++.|+||+  .++   +++|+++|+++|+++++|+++ .++.+.+.....+. ..+ +++.|+||.+  +|.|.||+++
T Consensus       170 ~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y-~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~  248 (387)
T PRK08960        170 LVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIY-HGLTYGVDAASVLEVDDDAFVLNSFSKYFGMTGWRLGWLVA  248 (387)
T ss_pred             EEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccc-cccccCCCCCChhhccCCEEEEeecccccCCcccEEEEEEc
Confidence            888899987  555   556777899999999999984 45554332222122 223 6789999986  7889999999


Q ss_pred             eCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCee
Q 010008          318 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL  397 (520)
Q Consensus       318 ~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~  397 (520)
                      ++      ++.+.+.........+.+...+.++ ..+|............+++.++++.+.+.|++.|+.+......+.+
T Consensus       249 ~~------~~~~~~~~~~~~~~~~~s~~~q~a~-~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~f  321 (387)
T PRK08960        249 PP------AAVPELEKLAQNLYISASTPAQHAA-LACFEPETLAILEARRAEFARRRDFLLPALRELGFGIAVEPQGAFY  321 (387)
T ss_pred             CH------HHHHHHHHHHhhhccCCCHHHHHHH-HHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcCCCeeEE
Confidence            87      6666655432222223333333433 2344321112235666778888889999998888765322223566


Q ss_pred             EEEEecCCCCCHHHHHH-HHhhcCeEEcCCCCCCCC-C-CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          398 VLVDLRPMGIDGARVEK-ILDMASITLNKNSVPGDK-S-ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       398 ~~vd~~~~g~~~~~~~~-~L~~~gI~v~~~~~Pg~~-~-~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      +|+++...+.+..++.+ +|+++||.+.    ||.. + ....+++||++..      ..+++++..+.|.+++
T Consensus       322 ~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f~~~~~~~~iRi~~~~------~~~~l~~al~~l~~~~  385 (387)
T PRK08960        322 LYADISAFGGDAFAFCRHFLETEHVAFT----PGLDFGRHQAGQHVRFAYTQ------SLPRLQEAVERIARGL  385 (387)
T ss_pred             EEEeccccCCCHHHHHHHHHHhCCEEEc----CchHhCCCCCCCeEEEEecC------CHHHHHHHHHHHHHHH
Confidence            78887543345566654 4578999994    4433 1 1124689998652      2456666555555443

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.94  E-value=8.8e-25  Score=229.08  Aligned_cols=333  Identities=19%  Similarity=0.219  Sum_probs=225.4

Q ss_pred             ccceEecCC--C-CChHHHHHHHhhhhhccCCCCCCCCCCCCcc-hhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH
Q 010008           94 KSLELIASE--N-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGN-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS  169 (520)
Q Consensus        94 ~~i~Liase--n-~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~-~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs  169 (520)
                      +.|++..++  . ..+|.|++++...+.. |..||++.|+..|. +...++|    +.+++++|.+.     .+..+||+
T Consensus        39 ~~i~~~~~~~lg~~~~~~v~~~~~~~~~~-~~~~~~~s~~~~G~~~~~~~le----~~ia~~~g~~~-----~ii~~~~~  108 (393)
T TIGR01822        39 EVLNFCANNYLGLSSHPDLIQAAKDALDE-HGFGMSSVRFICGTQDIHKELE----AKIAAFLGTED-----TILYASCF  108 (393)
T ss_pred             eEEEeeCCCccccCCCHHHHHHHHHHHHH-hCCCCCCcCcccCChHHHHHHH----HHHHHHhCCCc-----EEEECchH
Confidence            457776554  1 2478999999887754 43488888888774 4444555    67889999864     24457788


Q ss_pred             HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc-----CCc
Q 010008          170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPK  244 (520)
Q Consensus       170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~-----~pk  244 (520)
                      +|+..++.++++|||+|++.++.|.+...        .+...+.  ..+.+      ..+|++++++++++.     +++
T Consensus       109 ~a~~~~~~~l~~~gd~vi~~~~~~~s~~~--------~~~~~~~--~~~~~------~~~d~~~l~~~i~~~~~~~~~~~  172 (393)
T TIGR01822       109 DANGGLFETLLGAEDAIISDALNHASIID--------GVRLCKA--KRYRY------ANNDMADLEAQLKEARAAGARHR  172 (393)
T ss_pred             HHHHHHHHHhCCCCCEEEEeccccHHHHH--------HHHhcCC--ceEEe------CCCCHHHHHHHHHhhhhcCCCce
Confidence            99999999999999999999988765431        1222232  22222      247999999988752     677


Q ss_pred             EEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhccccccccc---C-CCC-CcccEEEeccCcccCCCCceEEEe
Q 010008          245 LIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV---A-DPF-KYCDVVTTTTHKSLRGPRGGMIFF  317 (520)
Q Consensus       245 lIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~---~-~p~-~~aDiv~~S~hK~l~GprgG~I~~  317 (520)
                      +|+++...+++  ..|+++|+++|+++|++|++|++|..|.......   . ..+ ..+|++++|+||+++|||+||+++
T Consensus       173 ~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~r~G~~~~  252 (393)
T TIGR01822       173 LIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGASGGFTTA  252 (393)
T ss_pred             EEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCCCcEEEEe
Confidence            88877555553  7899999999999999999999997776532110   0 111 257899999999999999999999


Q ss_pred             eCCCcchhhHHHhhcccCCCC-CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCe
Q 010008          318 KKDPVLGVELESAINNAVFPG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH  396 (520)
Q Consensus       318 ~~~~~~~~~l~~~i~~~~~p~-~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~  396 (520)
                      ++      ++.+.+.....+. ..++++...+++...+++...  +.++..+++.++++++.+.|.+.|+.+..+  ...
T Consensus       253 ~~------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~  322 (393)
T TIGR01822       253 RK------EVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLE--ASNELRDRLWANTRYFRERMEAAGFDIKPA--DHP  322 (393)
T ss_pred             CH------HHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHcCCCCCCC--CCC
Confidence            87      5666654422222 233444444555555666542  345677888999999999998888876532  223


Q ss_pred             eEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          397 LVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       397 ~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ++.+.+.. ..+..++.+.|.+.||.+.....|.  .+.....+|++.+..+    +++|++++++.|.++.+
T Consensus       323 ~~~i~~~~-~~~~~~l~~~L~~~gI~v~~~~~~~--~~~~~~~iRis~~~~~----t~edi~~~~~~l~~~~~  388 (393)
T TIGR01822       323 IIPVMLYD-AVLAQRFARRLLEEGIYVTGFFYPV--VPKGQARIRVQISAAH----TEEQLDRAVEAFTRIGR  388 (393)
T ss_pred             EEEEEeCC-HHHHHHHHHHHHHCCeeEeeeCCCC--CCCCCceEEEEECCCC----CHHHHHHHHHHHHHHHH
Confidence            33333321 1235667777778899986322221  1112356999877554    48999999999988765

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.94  E-value=2e-24  Score=226.97  Aligned_cols=333  Identities=16%  Similarity=0.137  Sum_probs=220.4

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      +.|+|..+++.  +++.+.+++...+.+....+|+.    .|   ...+.+...+++.+.+|.+.+. .-+|.+|+|+ +
T Consensus        33 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~y~~----~G---~~~lr~aia~~~~~~~g~~~~~-~~~I~it~G~~~  104 (399)
T PRK07681         33 KMIDLSIGNPDMPPADFVREEMVHTANQKESYGYTL----SG---IQEFHEAVTEYYNNTHNVILNA-DKEVLLLMGSQD  104 (399)
T ss_pred             CeEEeCCCCCCCCCCHHHHHHHHHHHhccccCCCCC----CC---cHHHHHHHHHHHHHHhCCCCCC-CCeEEECCCcHH
Confidence            56888777763  67889999887765321123331    22   2345555556777777754221 0157779998 8


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEEEEc
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAG  249 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklIi~~  249 (520)
                      |+..++.++++|||+|++++|.|.++..        .+...|.  ++++++++++ .+.+|++++++.+.. ++|+|+++
T Consensus       105 al~~~~~~~~~~Gd~Vlv~~P~y~~~~~--------~~~~~G~--~~~~v~~~~~~~~~~d~~~l~~~~~~-~~k~v~l~  173 (399)
T PRK07681        105 GLVHLPMVYANPGDIILVPDPGYTAYET--------GIQMAGA--TSYYMPLKKENDFLPDLELIPEEIAD-KAKMMILN  173 (399)
T ss_pred             HHHHHHHHhCCCCCEEEECCCCccchHH--------HHHhcCC--EEEEEecCCCCCCcCCHHHHHHhccc-cceEEEEe
Confidence            9999999999999999999998765432        2334555  6777777754 357899999988876 89999999


Q ss_pred             CCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCC---C-c--ccEEEeccCccc--CCCCceEEE
Q 010008          250 ASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-Y--CDVVTTTTHKSL--RGPRGGMIF  316 (520)
Q Consensus       250 ~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~---~-~--aDiv~~S~hK~l--~GprgG~I~  316 (520)
                      +|+||+  .++   +++|.++|+++|++||+|+++ ..+.+.+....++   . .  ..|++.|++|++  +|.|.||++
T Consensus       174 ~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i  252 (399)
T PRK07681        174 FPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAY-AEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMI  252 (399)
T ss_pred             CCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccc-hhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEEEe
Confidence            899997  555   677888899999999999994 4555433211111   1 1  237789999987  788999999


Q ss_pred             eeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCe
Q 010008          317 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH  396 (520)
Q Consensus       317 ~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~  396 (520)
                      +++      ++.+++.........+.+...+.+ ...+|... ...+++..+.+.++++.+.+.|.+.|+++..+ ....
T Consensus       253 ~~~------~l~~~~~~~~~~~~~~~s~~~q~~-~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p-~~g~  323 (399)
T PRK07681        253 GNE------EIVRALTQFKSNTDYGVFLPIQKA-ACAALRNG-AAFCEKNRGIYQERRDTLVDGFRTFGWNVDKP-AGSM  323 (399)
T ss_pred             cCH------HHHHHHHHHHhhcccCCCHHHHHH-HHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC-Ceee
Confidence            877      676666543211112222333333 23344321 12335666777888889999998888876543 2356


Q ss_pred             eEEEEecCCCCCHHHHHHH-HhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          397 LVLVDLRPMGIDGARVEKI-LDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       397 ~~~vd~~~~g~~~~~~~~~-L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      ++|+++. .+++..++.+. ++++||.+.    ||.. +...++++||++.      .+++++++..+.|.+
T Consensus       324 f~~~~l~-~~~~~~~~~~~l~~~~gv~v~----pg~~f~~~~~~~iRis~~------~~~~~~~~~l~~l~~  384 (399)
T PRK07681        324 FVWAEIP-KGWTSLSFAYALMDRANVVVT----PGHAFGPHGEGFVRIALV------QDEEVLQQAVENIRN  384 (399)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHhCCEEEe----CChhhCcCCCCeEEEEec------CCHHHHHHHHHHHHH
Confidence            7788875 35566665554 455999994    5543 2223578999864      236888888877765

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.94  E-value=2e-24  Score=224.03  Aligned_cols=332  Identities=14%  Similarity=0.079  Sum_probs=225.2

Q ss_pred             cceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHH
Q 010008           95 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE  174 (520)
Q Consensus        95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~  174 (520)
                      .+-|+++...+++.|++++..... .+           +.++.+.++ .+++.+++++|+++++. ..+.+.||++|+..
T Consensus         4 ~~l~~pgp~~~~~~v~~~~~~~~~-~~-----------~~~~~~~~~-~~r~~la~l~~~~~~~~-~i~~t~~~t~al~~   69 (363)
T TIGR02326         4 YLLLTPGPLTTSRTVKEAMLFDWC-TW-----------DSDYNIVVE-QIRQQLLALATAEEGYT-SVLLQGSGTFAVEA   69 (363)
T ss_pred             eeEecCCCCCCCHHHHHHhCCCCC-CC-----------ChHHHHHHH-HHHHHHHHHhCCCCCce-EEEEcCCCHHHHHH
Confidence            355778888899999999865431 11           234555555 57789999999976321 12344667799999


Q ss_pred             HHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc-CCcEEEEcCCCC
Q 010008          175 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-RPKLIIAGASAY  253 (520)
Q Consensus       175 ~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~-~pklIi~~~s~~  253 (520)
                      ++.+++.+||.+++..+.+.+.   .+.   ......|.  +++.++++ +++.+|+++++++++.. +++++.+.++.+
T Consensus        70 ~~~~l~~~~~~vlv~~~~~~~~---~~~---~~a~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~  140 (363)
T TIGR02326        70 VIGSAVPKDGKLLVVINGAYGA---RIV---QIAEYLGI--PHHVVDTG-EVEPPDVVEVEAILAADPAITHIALVHCET  140 (363)
T ss_pred             HHHhcCCCCCeEEEEeCChhhH---HHH---HHHHHcCC--ceEEEeCC-CCCCCCHHHHHHHHhhCCCccEEEEEeecC
Confidence            9999999999887765432111   000   01223454  44445554 45789999999998752 356676665555


Q ss_pred             CC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHh
Q 010008          254 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA  330 (520)
Q Consensus       254 p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~  330 (520)
                      ++  ..|+++|.++|+++|+++++|++|+.|....+....   ++|++++|+||||.||.| |++++++      +..++
T Consensus       141 ~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~---~~D~~~~s~~K~l~~p~G~G~l~~~~------~~~~~  211 (363)
T TIGR02326       141 TTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAEL---HIDYLISSANKCIQGVPGFGFVIARQ------AELAA  211 (363)
T ss_pred             CccccCcHHHHHHHHHHcCCEEEEEccccccCcccchhhc---CccEEEecCccccccCCcceEEEECH------HHHHH
Confidence            54  789999999999999999999998776543222211   589999999999988887 9999987      33332


Q ss_pred             hcccCC----------------CC-CCCCChHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHCCCEEecCC
Q 010008          331 INNAVF----------------PG-LQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELGYKLVSGG  392 (520)
Q Consensus       331 i~~~~~----------------p~-~~g~p~~~~iaala~al~~~~~~-~~~~~~~~i~~na~~l~~~L~~~G~~v~~~g  392 (520)
                      +.....                ++ ...+++.+.+.++..|++.+... ++++..+++.++++++.+.|.+.|+.++.+.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~  291 (363)
T TIGR02326       212 CKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRALGFEPLLDD  291 (363)
T ss_pred             hhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCc
Confidence            211000                01 12245667777888888776544 3677788999999999999988999886532


Q ss_pred             -CCCe-eEEEEecCC-CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          393 -SDNH-LVLVDLRPM-GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       393 -t~~~-~~~vd~~~~-g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                       ..++ ..++.+... .++...+.+.|++.||.+..+    ..  ....+||||+....    +.+|++++++.|++++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~v~~g----~~--~~~~~iRi~~~~~~----~~edv~~~l~~l~~~l  360 (363)
T TIGR02326       292 EIQSPIITSFYSPEDPDYRFADFYQRLKEQGFVIYPG----KV--SQVDCFRIGNIGEV----DAADITRLLTAIGKAM  360 (363)
T ss_pred             ccCCceEEEEECCCCCCCCHHHHHHHHHHCCEEEECC----cC--CCCCEEEEecCCCC----CHHHHHHHHHHHHHHh
Confidence             1222 233444321 246677888899999999543    21  13468999975443    4799999999998875

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK12414 putative aminotransferase; Provisional

Probab=99.94  E-value=9.2e-25  Score=228.43  Aligned_cols=351  Identities=15%  Similarity=0.170  Sum_probs=226.9

Q ss_pred             ccccChHHHHHHHHHHHHhhccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 010008           74 LGEADPEVCEIITKEKERQFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA  151 (520)
Q Consensus        74 l~~~d~~~~~~~~~e~~~~~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~l  151 (520)
                      +....+.+...+... ..+.+.|+|..+++.  +++.+.+++...+.... .+|+.      ......+.+..+++++++
T Consensus        11 ~~~~~~~~~~~~~~~-~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~-~~Y~~------~~G~~~lr~~ia~~l~~~   82 (384)
T PRK12414         11 LPDVGTTIFTVIGQL-AAQHDALNLSQGAPNFAPDPALVEGVARAMRDGH-NQYAP------MAGIAALREALAEKTERL   82 (384)
T ss_pred             cccCCccHHHHHHHH-HHhCCeEEcCCCCCCCCCCHHHHHHHHHHHHhCC-CCcCC------CCCcHHHHHHHHHHHHHH
Confidence            344444455554333 234467889887754  47888888877665321 22322      122345656667889999


Q ss_pred             cCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCC
Q 010008          152 FNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVD  230 (520)
Q Consensus       152 fg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD  230 (520)
                      +|++.+.. -+|.+++|+ +|+..++.++++|||+|++++|.|.++.        ..+...|.  +++.++++.+++.+|
T Consensus        83 ~g~~~~~~-~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~--------~~~~~~g~--~~~~v~~~~~~~~~d  151 (384)
T PRK12414         83 YGARYDPA-SEVTVIASASEGLYAAISALVHPGDEVIYFEPSFDSYA--------PIVRLQGA--TPVAIKLSPEDFRVN  151 (384)
T ss_pred             hCCCCCCC-CcEEEECChHHHHHHHHHHhcCCCCEEEEeCCCccchH--------HHHHHcCC--EEEEEecCccccccC
Confidence            99863110 135557776 8999999999999999999999875432        12234454  666677765567899


Q ss_pred             HHHHHHHhhhcCCcEEEEcCCCCCC--C---CCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC------cccEE
Q 010008          231 YDMLEKTAILFRPKLIIAGASAYPR--D---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK------YCDVV  299 (520)
Q Consensus       231 ~d~le~~i~~~~pklIi~~~s~~p~--~---~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~------~aDiv  299 (520)
                      ++++++.+++ ++|+|+++.++||+  .   .++++|.++|+++|+++++|+++. .+.+.+....++.      ..-++
T Consensus       152 ~~~l~~~l~~-~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~-~~~~~~~~~~~~~~~~~~~~~~i~  229 (384)
T PRK12414        152 WDEVAAAITP-RTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYE-HVVFDGARHHSMARHRELAERSVI  229 (384)
T ss_pred             HHHHHhhcCc-ccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhh-hccCCCCCccCcccCcCccCcEEE
Confidence            9999999977 89999999999997  3   368888999999999999999953 4444332111221      12388


Q ss_pred             EeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 010008          300 TTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL  377 (520)
Q Consensus       300 ~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l  377 (520)
                      +.|++|.+  +|.|.||+++++      ++.+.+.........+.+...+.+ +..+|+.  ...+....+.+.++++.+
T Consensus       230 ~~SfSK~~~~pGlRiG~~v~~~------~l~~~l~~~~~~~~~~~s~~~q~a-~~~~l~~--~~~~~~~~~~~~~~r~~l  300 (384)
T PRK12414        230 VSSFGKSYHVTGWRVGYCLAPA------ELMDEIRKVHQFMVFSADTPMQHA-FAEALAE--PASYLGLGAFYQRKRDLL  300 (384)
T ss_pred             EecccccccCccceEEEEecCH------HHHHHHHHHHhheecCCCcHHHHH-HHHHhcC--ChHHHHHHHHHHHHHHHH
Confidence            89999976  789999999987      566655443211112222333333 2333432  123345567788889999


Q ss_pred             HHHHHHCCCEEecCCCCCeeEEEEecCC-C-CCHHHHHHHHhhcCeEEcCCCCCCCC-C--CCCCCEEEEccCCccccCC
Q 010008          378 ASRLVELGYKLVSGGSDNHLVLVDLRPM-G-IDGARVEKILDMASITLNKNSVPGDK-S--ALVPGGIRIGSPAMTTRGF  452 (520)
Q Consensus       378 ~~~L~~~G~~v~~~gt~~~~~~vd~~~~-g-~~~~~~~~~L~~~gI~v~~~~~Pg~~-~--~~~~~giRig~~~~tt~g~  452 (520)
                      .+.|++.|+.+..+ ..+.++|+++... + .+.+.+.+.|+++||.+    .||+. +  ....++|||+...      
T Consensus       301 ~~~L~~~g~~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v----~pg~~f~~~~~~~~~iRis~~~------  369 (384)
T PRK12414        301 ARELAGSRFELLPS-EGSFFMLARFRHFSDESDSDFVLRLIRDARVAT----IPLSAFYTDGTDTGLIRLSFSK------  369 (384)
T ss_pred             HHHHHhCCCeecCC-CcceEEEEcccccCCCCHHHHHHHHHHhCCEEE----ecchhhcCCCCCCCEEEEEecC------
Confidence            99999888876543 2355666677531 2 23455667888999999    45543 1  1124689998652      


Q ss_pred             CHHHHHHHHHHHH
Q 010008          453 SEKEFVAIADFIH  465 (520)
Q Consensus       453 ~~~d~~~la~~i~  465 (520)
                      .++++++..+.|.
T Consensus       370 ~~~~~~~~~~rl~  382 (384)
T PRK12414        370 DDATLVEGARRLC  382 (384)
T ss_pred             CHHHHHHHHHHHh
Confidence            3677776666654

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.94  E-value=1.6e-24  Score=227.09  Aligned_cols=357  Identities=16%  Similarity=0.184  Sum_probs=228.0

Q ss_pred             hhccccChHHHHHHHHHHHHhhccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHH
Q 010008           72 YSLGEADPEVCEIITKEKERQFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL  149 (520)
Q Consensus        72 ~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~  149 (520)
                      .++.......+..+.+......+.|+|..+++.  +++.+.+++...+.+.. .+|      +.......+++...+++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y------~~~~g~~~lr~~ia~~~~   84 (391)
T PRK08361         12 GRINLIQRSKIRELFERASKMENVISLGIGEPDFDTPKNIKEAAKRALDEGW-THY------TPNAGIPELREAIAEYYK   84 (391)
T ss_pred             HHHHhCCccHHHHHHHHHHhhcCeEEcCCCCCCCCCCHHHHHHHHHHHhcCC-CCC------CCCCCcHHHHHHHHHHHH
Confidence            334433343333333332222456888877764  46788888887665432 122      111223466666667777


Q ss_pred             HHcCC--CCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-
Q 010008          150 AAFNL--DENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-  225 (520)
Q Consensus       150 ~lfg~--~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-  225 (520)
                      +.+|.  +++    +|.+++|+ +|+..++.++++|||+|++++|+|.+...        .+...|.  +++.++++++ 
T Consensus        85 ~~~g~~~~~~----~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~  150 (391)
T PRK08361         85 KFYGVDVDVD----NVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVE--------DAKIAEA--KPIRIPLREEN  150 (391)
T ss_pred             HHhCCCCCcc----cEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHH--------HHHHcCC--EEEEEecCCcc
Confidence            77764  444    55567776 89999999999999999999998765431        2334454  6667777654 


Q ss_pred             CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCC-C---cc
Q 010008          226 TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-K---YC  296 (520)
Q Consensus       226 ~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~-~---~a  296 (520)
                      ++.+|++++++.+++ ++++|+++.|+||+  ..+   +++|.++|+++++++|+|+++ ..+.+.+....++ .   ..
T Consensus       151 ~~~~d~~~l~~~i~~-~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~  228 (391)
T PRK08361        151 EFQPDPDELLELITK-RTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPY-EHFLYEGAKHYPMIKYAPDN  228 (391)
T ss_pred             CCCCCHHHHHHhccc-ccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEccc-ccceeCCCCCCCHhhcCCCC
Confidence            467999999999987 79999999899987  667   788889999999999999995 3444322111111 1   24


Q ss_pred             cEEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Q 010008          297 DVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS-PEFKVYQNKVVSN  373 (520)
Q Consensus       297 Div~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~-~~~~~~~~~i~~n  373 (520)
                      ++++.|+||++  +|.|.||+++++      ++.+.+.........+.+...+.++ ..+|+.-.. ...++..+++.++
T Consensus       229 ~i~~~s~SK~~~~~GlRiG~~~~~~------~~~~~~~~~~~~~~~~~~~~~q~~~-~~~l~~~~~~~~~~~~~~~~~~~  301 (391)
T PRK08361        229 TILANSFSKTFAMTGWRLGFVIAPE------QVIKDMIKLHAYIIGNVASFVQIAG-IEALRSKESWKAVEEMRKEYNER  301 (391)
T ss_pred             EEEEecCchhcCCcHhhhhhhccCH------HHHHHHHHHHhhhccCCChHHHHHH-HHHhcCCcccHHHHHHHHHHHHH
Confidence            58889999987  677889999987      5665554321111112222222322 223432111 1235667777888


Q ss_pred             HHHHHHHHHHC-CCEEecCCCCCeeEEEEecCCCCCHHHHHHHH-hhcCeEEcCCCCCCCC-CCCCCCEEEEccCCcccc
Q 010008          374 CRALASRLVEL-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTR  450 (520)
Q Consensus       374 a~~l~~~L~~~-G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~  450 (520)
                      ++.+.+.|++. |+.+..+ ..+.++|+++...+++..++.+.| +++||.+.    ||.. +...++++||++.     
T Consensus       302 ~~~~~~~L~~~~~~~~~~p-~g~~~~~~~l~~~~~~~~~l~~~l~~~~gv~v~----pg~~f~~~~~~~iRi~~~-----  371 (391)
T PRK08361        302 RKLVLKRLKEMPHIKVFEP-KGAFYVFANIDETGMSSEDFAEWLLEKARVVVI----PGTAFGKAGEGYIRISYA-----  371 (391)
T ss_pred             HHHHHHHHHhCCCCeecCC-CEEEEEEEECCCCCCCHHHHHHHHHHhCCEEEc----CchhhCCCCCCEEEEEec-----
Confidence            88899999874 7776543 234567778764456777766655 57899994    5543 2234578999865     


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q 010008          451 GFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       451 g~~~~d~~~la~~i~~~l~  469 (520)
                       ..++++++..+.|.++++
T Consensus       372 -~~~~~l~~al~~l~~~l~  389 (391)
T PRK08361        372 -TSKEKLIEAMERMEKALE  389 (391)
T ss_pred             -CCHHHHHHHHHHHHHHHh
Confidence             235677777777776654

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.94  E-value=1.6e-24  Score=226.20  Aligned_cols=334  Identities=14%  Similarity=0.069  Sum_probs=221.9

Q ss_pred             hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC--CCCCCCceeeecCCh
Q 010008           93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSG  168 (520)
Q Consensus        93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg--~~~~~~~~~V~~~sG  168 (520)
                      .+.|+|..+++.  +++.+.+++...+.+.. .+|+.      ......+++...+++.+.+|  ++++    +|.+++|
T Consensus        24 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-~~Y~~------~~G~~~lr~~la~~~~~~~~~~~~~~----~i~~t~g   92 (382)
T PRK06108         24 EGVLPLWFGESDLPTPDFIRDAAAAALADGE-TFYTH------NLGIPELREALARYVSRLHGVATPPE----RIAVTSS   92 (382)
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC------CCCCHHHHHHHHHHHHHHhCCCcCcc----eEEEeCC
Confidence            356889888863  57899999888775431 12332      11234566666678888888  5554    4555776


Q ss_pred             H-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC--CCCCCCHHHHHHHhhhcCCcE
Q 010008          169 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE--STGLVDYDMLEKTAILFRPKL  245 (520)
Q Consensus       169 s-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~--~~~~iD~d~le~~i~~~~pkl  245 (520)
                      + +|+..++.++++|||+|++.+|.|..+..        .+...|.  +++.++++.  .++.+|++++++.+++ ++++
T Consensus        93 ~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~~d~~~l~~~~~~-~~~~  161 (382)
T PRK06108         93 GVQALMLAAQALVGPGDEVVAVTPLWPNLVA--------APKILGA--RVVCVPLDFGGGGWTLDLDRLLAAITP-RTRA  161 (382)
T ss_pred             hHHHHHHHHHHhcCCCCEEEEeCCCccchHH--------HHHHCCC--EEEEeeCCCCCCCccCCHHHHHHhcCc-cceE
Confidence            6 89999999999999999999998764421        2234455  555666653  2457999999999876 8999


Q ss_pred             EEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccc-c-ccCCCCC-----cccEEEeccCccc--CCCC
Q 010008          246 IIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAA-S-VVADPFK-----YCDVVTTTTHKSL--RGPR  311 (520)
Q Consensus       246 Ii~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~-~-~~~~p~~-----~aDiv~~S~hK~l--~Gpr  311 (520)
                      |+++.++||+  ..   ++++|.++|+++|+++|+|++|. ++... + ..+..+.     ...+++.|+||++  +|.|
T Consensus       162 i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R  240 (382)
T PRK06108        162 LFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYE-RLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWR  240 (382)
T ss_pred             EEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhh-hhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccc
Confidence            9998889987  33   46888999999999999999954 44432 1 1111111     1237889999976  6888


Q ss_pred             ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEec
Q 010008          312 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVS  390 (520)
Q Consensus       312 gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~  390 (520)
                      .||+++++      ++.+.+.........+.+...+. +...+|... ...+++..+++.++++.+.+.|.+. |+.+..
T Consensus       241 iG~~~~~~------~~~~~~~~~~~~~~~~~~~~~q~-a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  312 (382)
T PRK06108        241 LGWLVAPP------ALGQVLEKLIEYNTSCVAQFVQR-AAVAALDEG-EDFVAELVARLRRSRDHLVDALRALPGVEVAK  312 (382)
T ss_pred             eeeeeCCH------HHHHHHHHHHHhcccCCChHHHH-HHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhCCCCcccC
Confidence            99999987      56666544321111233333333 223344431 1234677788888888999999874 777765


Q ss_pred             CCCCCeeEEEEecCCCCCHHHHHHH-HhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          391 GGSDNHLVLVDLRPMGIDGARVEKI-LDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       391 ~gt~~~~~~vd~~~~g~~~~~~~~~-L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      + ..+.++|+++.. ..+..++.+. ++++||.+    .||.. ++..++++||+...      +++++++..+.|.+++
T Consensus       313 p-~~g~~~~~~l~~-~~~~~~~~~~ll~~~gV~v----~pg~~f~~~~~~~~Ris~~~------~~~~l~~~l~~l~~~l  380 (382)
T PRK06108        313 P-DGAMYAFFRIPG-VTDSLALAKRLVDEAGLGL----APGTAFGPGGEGFLRWCFAR------DPARLDEAVERLRRFL  380 (382)
T ss_pred             C-CeeEEEEEeCCC-CCCHHHHHHHHHHhCCEEE----eCchhhCCCCCCEEEEEecC------CHHHHHHHHHHHHHHH
Confidence            4 234556777743 2355555554 57899999    44443 22346789998763      4788998888887765


Q ss_pred             H
Q 010008          469 E  469 (520)
Q Consensus       469 ~  469 (520)
                      +
T Consensus       381 ~  381 (382)
T PRK06108        381 A  381 (382)
T ss_pred             h
Confidence            3

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.94  E-value=1.5e-24  Score=227.07  Aligned_cols=335  Identities=15%  Similarity=0.134  Sum_probs=219.9

Q ss_pred             hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceeeecCCh
Q 010008           93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSG  168 (520)
Q Consensus        93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V~~~sG  168 (520)
                      .+.|+|..+++.  +++.+.+++...+.+....+|+.   ..|   ...+.+...+++.+.+|.  ++++   +|.+|+|
T Consensus        30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G---~~~lr~aia~~~~~~~g~~~~~~~---~I~it~G  100 (388)
T PRK07366         30 KELIDLSLGSSDLPAPAHALEAIAQSLHDPSTHGYLL---FHG---TLDFREAAAQWYEQRFGLAVDPET---EVLPLIG  100 (388)
T ss_pred             CCeEEeCCCCCCCCCCHHHHHHHHHHHhCcccCCCCC---CCC---CHHHHHHHHHHHHHhhCCcCCCcC---eEEECCC
Confidence            356888888863  57889999887764332223332   122   235555556777777775  4431   4677899


Q ss_pred             H-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEE
Q 010008          169 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       169 s-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklI  246 (520)
                      + +|+..++.++++|||+|++.+|.|.++..        .+...|.  ++++++++++ .+.+|++++++.+.. ++|+|
T Consensus       101 s~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~~~~-~~k~i  169 (388)
T PRK07366        101 SQEGTAHLPLAVLNPGDFALLLDPGYPSHAG--------GVYLAGG--QIYPMPLRAENDFLPVFADIPTEVLA-QARLM  169 (388)
T ss_pred             cHHHHHHHHHHhCCCCCEEEEcCCCCcchHH--------HHHhcCC--EEEEEECCCccCCCCCHHHHHHhhcc-cceEE
Confidence            8 89999999999999999999998865532        2334565  6667777644 367899999888766 79999


Q ss_pred             EEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccc--cCCCCC---ccc--EEEeccCccc--CCCCc
Q 010008          247 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV--VADPFK---YCD--VVTTTTHKSL--RGPRG  312 (520)
Q Consensus       247 i~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~--~~~p~~---~aD--iv~~S~hK~l--~Gprg  312 (520)
                      +++.|+||+  ..+   +++|.++|+++|++||+|++ |..+.+.+.  .++...   ..+  +++.|++|++  +|.|.
T Consensus       170 ~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~-Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRi  248 (388)
T PRK07366        170 VLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFP-YVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRI  248 (388)
T ss_pred             EEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecc-hhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhh
Confidence            999999997  444   56777789999999999998 455554332  111111   112  6789999986  79999


Q ss_pred             eEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCC
Q 010008          313 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG  392 (520)
Q Consensus       313 G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~g  392 (520)
                      ||+++++      ++.+++.....+...+++.....+++ .++.. ....+++..+.+.++++.+.+.|++.|+.+..+ 
T Consensus       249 G~~v~~~------~li~~l~~~~~~~~~~~~~~~~~~a~-~~l~~-~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~p-  319 (388)
T PRK07366        249 GFAIGNA------QLIQALRQVKAVVDFNQYRGILNGAI-AALTG-PQATVQQTVQIFRQRRDAFINALHQIGWPVPLP-  319 (388)
T ss_pred             eehcCCH------HHHHHHHHHHhhcccCCCHHHHHHHH-HHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC-
Confidence            9999987      67666654332222222222222222 23432 112346777888888999999998888765443 


Q ss_pred             CCCeeEEEEecCC-CCCHHHHH-HHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          393 SDNHLVLVDLRPM-GIDGARVE-KILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       393 t~~~~~~vd~~~~-g~~~~~~~-~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      ..+.++|+++... +.+..++. .++++.||.+.    ||.. +...++++||++.      .+++++++..+.|.+.
T Consensus       320 ~~g~f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~----pg~~f~~~~~~~iRi~~~------~~~~~l~~~l~rl~~~  387 (388)
T PRK07366        320 EATMYVWAKLPEPWQGNSVEFCTQLVAQTGVAAS----PGSGFGKSGEGYVRFALV------HDPDILEEAVERIAAF  387 (388)
T ss_pred             CeeEEEEEECCcccCCCHHHHHHHHHHhCCEEEe----CchHhCcCCCCeEEEEec------CCHHHHHHHHHHHHHh
Confidence            2356778887532 12345554 55578999994    5543 2223578999864      2367777777777653

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.94  E-value=3.7e-24  Score=224.25  Aligned_cols=357  Identities=14%  Similarity=0.108  Sum_probs=229.8

Q ss_pred             ccccChHHHHHHHHHHHHhhccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 010008           74 LGEADPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA  151 (520)
Q Consensus        74 l~~~d~~~~~~~~~e~~~~~~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~l  151 (520)
                      +....+.++..+.....+....++|..+++  .+++.+.+|+...+.+.-..+|+.   ..|   ...+.+..++++++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~Y~~---~~G---~~~lr~~~~~~l~~~   81 (389)
T PRK05957          8 MDAVQSPIIPVVGQLIRENPGTISLGQGVVSYPPPPEAIEALNNFLANPENHKYQA---VQG---IPPLLEAITQKLQQD   81 (389)
T ss_pred             HHhcCCcHHHHHHHHHHhCCCeEEccCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC---CCC---CHHHHHHHHHHHHHH
Confidence            333444445444333333235588887775  368889999987765332223322   122   234445566788888


Q ss_pred             cCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCC
Q 010008          152 FNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVD  230 (520)
Q Consensus       152 fg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD  230 (520)
                      +|.+.+.. .+|.+++|+ +++..++.++++|||+|++++|.|..+..        .+...|.  +++.++++ +++.+|
T Consensus        82 ~g~~~~~~-~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d  149 (389)
T PRK05957         82 NGIELNNE-QAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEM--------AITMAGC--QPILVPTD-DNYQLQ  149 (389)
T ss_pred             hCCCCCCC-CeEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHHH--------HHHhcCC--EEEEeecC-CCCCcC
Confidence            89752100 146668887 89888899999999999999998765532        1233454  66666665 457899


Q ss_pred             HHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccc-cCCCCC----c-ccEE
Q 010008          231 YDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VADPFK----Y-CDVV  299 (520)
Q Consensus       231 ~d~le~~i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~~p~~----~-aDiv  299 (520)
                      ++++++.+++ ++|+|++++++||+  ..+   +++|.++|+++|+++++|+++ ..+.+.+. +..+..    . -.|+
T Consensus       150 ~~~l~~~i~~-~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y-~~~~~~~~~~~~~~~~~~~~~~~i~  227 (389)
T PRK05957        150 PEAIEQAITP-KTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAY-EYFTYDGVKHFSPGSIPGSGNHTIS  227 (389)
T ss_pred             HHHHHHhcCc-CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccc-hhccCCCCCccChhhCCCccCcEEE
Confidence            9999999987 89999999999987  555   888999999999999999984 45544321 111111    1 2377


Q ss_pred             EeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 010008          300 TTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL  377 (520)
Q Consensus       300 ~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l  377 (520)
                      +.|++|.+  +|.|.||+++++      ++.+++.........+.+...+.++. .+|+.. ...+++..+++.++++.+
T Consensus       228 ~~S~SK~~g~~GlRiG~~~~~~------~~~~~~~~~~~~~~~~~~~~~q~~~~-~~l~~~-~~~~~~~~~~~~~~r~~l  299 (389)
T PRK05957        228 LYSLSKAYGFASWRIGYMVIPI------HLLEAIKKIQDTILICPPVVSQYAAL-GALQVG-KSYCQQHLPEIAQVRQIL  299 (389)
T ss_pred             EecchhhccCccceeEEEecCH------HHHHHHHHHHhhcccCCCcHHHHHHH-HHHhCC-hHHHHHHHHHHHHHHHHH
Confidence            89999986  788899999987      67666654332222233333333322 234321 112466777888889999


Q ss_pred             HHHHHHC-CC-EEecCCCCCeeEEEEecCCCCCHHHHHHHH-hhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCC
Q 010008          378 ASRLVEL-GY-KLVSGGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFS  453 (520)
Q Consensus       378 ~~~L~~~-G~-~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~  453 (520)
                      .+.|++. |+ .+..+ ..+.++|+++. .+++..++.+.| ++.||.+    .||+. +....+++||++...     .
T Consensus       300 ~~~L~~~~~~~~~~~~-~gg~~~~~~~~-~~~~~~~~~~~l~~~~gv~v----~pg~~f~~~~~~~iRis~~~~-----~  368 (389)
T PRK05957        300 LKSLGQLQDRCTLHPA-NGAFYCFLKVN-TDLNDFELVKQLIREYRVAV----IPGTTFGMKNGCYLRIAYGAL-----Q  368 (389)
T ss_pred             HHHHHhcCCCccccCC-CeeEEEEEeCC-CCCChHHHHHHHHHHCCEEE----ccchhhCCCCCCEEEEEEecC-----C
Confidence            9999874 43 43332 22456677774 356776666665 5799999    45543 222246899997543     3


Q ss_pred             HHHHHHHHHHHHHHHH
Q 010008          454 EKEFVAIADFIHEGVE  469 (520)
Q Consensus       454 ~~d~~~la~~i~~~l~  469 (520)
                      ++++++..+.|.+.++
T Consensus       369 ~~~l~~~~~~l~~~~~  384 (389)
T PRK05957        369 KATAKEGIERLVQGLK  384 (389)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6777777777766654

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.94  E-value=1e-24  Score=229.45  Aligned_cols=341  Identities=18%  Similarity=0.189  Sum_probs=229.2

Q ss_pred             ceEe-cCCCCChHHHHHHHhhhhhccCCCCCCCCCCC-CcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh-HHHH
Q 010008           96 LELI-ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYY-GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPAN  172 (520)
Q Consensus        96 i~Li-asen~~~~~V~ea~~s~l~~~y~~G~p~~ryy-~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG-s~A~  172 (520)
                      +.|. ++..++++.|++++...+.+.+  +.|+.+.+ .+... +..-+.+++.+++++|+++++    |..++| ++++
T Consensus         5 ~yld~aa~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~r~~la~~~g~~~~~----v~~~~g~t~a~   77 (402)
T TIGR02006         5 IYLDYAATTPVDPRVAEKMMPYLTEKF--GNPASRSHSFGWEA-EEAVENARNQVAELIGADSRE----IVFTSGATESN   77 (402)
T ss_pred             EEeeCCcCCCCCHHHHHHHHHHHHhcC--CCCChhhhHHHHHH-HHHHHHHHHHHHHHhCCCCCe----EEEeCCHHHHH
Confidence            4554 3556889999999988876554  34442211 12121 223335678899999998763    334554 5898


Q ss_pred             HHHHHhh----CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEE
Q 010008          173 FEVYTAI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA  248 (520)
Q Consensus       173 ~~~l~al----l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~  248 (520)
                      ..++.++    .++||+|++.+++|.+......     .+...|.  +++.++++ +++.+|++++++++++ ++++|++
T Consensus        78 ~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~-----~~~~~g~--~v~~v~~~-~~~~~d~~~l~~~l~~-~~~lv~v  148 (402)
T TIGR02006        78 NLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCR-----YLEREGF--EVTYLPPK-SNGLIDLEELKAAIRD-DTILVSI  148 (402)
T ss_pred             HHHHHHHHHhhcCCCCEEEECCCccHHHHHHHH-----HHHhcCC--EEEEEccC-CCCcCCHHHHHHhcCC-CCEEEEE
Confidence            8887765    3789999999887765432111     1122344  55566666 4678999999999987 7999998


Q ss_pred             cCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchh
Q 010008          249 GASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGV  325 (520)
Q Consensus       249 ~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~  325 (520)
                      .+++|++  ..|+++|.++|+++|+++++|++|+.|.+..+....   ++|++++|+||++ ||.| |+++.+++     
T Consensus       149 ~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~~~~~---~~D~~~~s~~K~~-gp~G~G~l~~~~~-----  219 (402)
T TIGR02006       149 MHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINVNEL---KVDLMSISGHKIY-GPKGIGALYVRRK-----  219 (402)
T ss_pred             ECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcccCcccc---CCCEEEEehhhhc-CCCceEEEEEccC-----
Confidence            8877765  789999999999999999999999888664332211   6899999999964 7877 88888863     


Q ss_pred             hHHHhhcccCC------CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecCCC--CCe
Q 010008          326 ELESAINNAVF------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGS--DNH  396 (520)
Q Consensus       326 ~l~~~i~~~~~------p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~gt--~~~  396 (520)
                       ...++.....      ....|+++...++++..+++.+. .+++...++..+.++.+.+.|.+ .++.+..+..  ..+
T Consensus       220 -~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~  297 (402)
T TIGR02006       220 -PRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAK-EEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPG  297 (402)
T ss_pred             -CCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCC
Confidence             1112221111      11257889999999999998765 45677778888888888888876 4666654311  112


Q ss_pred             eEEEEecCCCCCHHHHHHHHhhcCeEEcCCC--CCCCCC------------CCCCCEEEEccCCccccCCCHHHHHHHHH
Q 010008          397 LVLVDLRPMGIDGARVEKILDMASITLNKNS--VPGDKS------------ALVPGGIRIGSPAMTTRGFSEKEFVAIAD  462 (520)
Q Consensus       397 ~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~--~Pg~~~------------~~~~~giRig~~~~tt~g~~~~d~~~la~  462 (520)
                      ...+.+.  +++++.+...|  .+|.++.+.  .++...            ....+.||+|+..+||    ++|++++++
T Consensus       298 ~~~v~f~--~~~~~~~~~~l--~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t----~edid~l~~  369 (402)
T TIGR02006       298 NLNVSFN--YVEGESLIMAL--KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTT----EEEIDYAVK  369 (402)
T ss_pred             eEEEEEe--CcCHHHHHHhc--CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCC----HHHHHHHHH
Confidence            2233343  34566666555  366654432  121110            0124789999988876    899999999


Q ss_pred             HHHHHHHHH
Q 010008          463 FIHEGVEIT  471 (520)
Q Consensus       463 ~i~~~l~~~  471 (520)
                      .|.++++..
T Consensus       370 ~l~~~~~~~  378 (402)
T TIGR02006       370 LVKSAIDKL  378 (402)
T ss_pred             HHHHHHHHH
Confidence            999987653

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.94  E-value=6.4e-24  Score=221.95  Aligned_cols=334  Identities=16%  Similarity=0.134  Sum_probs=219.4

Q ss_pred             hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-
Q 010008           93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-  169 (520)
Q Consensus        93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-  169 (520)
                      .+.++|..+++.  +++.+.+++.+.+.+....+|+.   ..|   ..++.+...+++.+.+|.+.+.- -+|.+++|+ 
T Consensus        29 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G---~~~lr~~ia~~~~~~~~~~~~~~-~~vi~t~G~~  101 (383)
T TIGR03540        29 VDVISLGIGDPDLPTPKHIVEALCKAAENPENHRYPS---YEG---MLAYRQAVADWYKRRFGVELDPE-TEVLSLIGSK  101 (383)
T ss_pred             CCeEEeCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC---CCC---CHHHHHHHHHHHHHhhCCCCCCC-CeEEECCCcH
Confidence            356788777653  57889999887765432234443   223   23555566678887777753210 146678887 


Q ss_pred             HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCC-CCCCHHHHHHHhhhcCCcEEEE
Q 010008          170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILFRPKLIIA  248 (520)
Q Consensus       170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~-~~iD~d~le~~i~~~~pklIi~  248 (520)
                      +++..++.++++|||+|++++|+|.++..        .....|.  +++.++++.++ +.+|++++++.+.+ ++|+|++
T Consensus       102 ~~l~~~~~~~~~~gd~vlv~~P~y~~~~~--------~~~~~G~--~v~~v~~~~~~g~~~d~~~l~~~~~~-~~~~v~i  170 (383)
T TIGR03540       102 EGIAHIPLAFVNPGDIVLVPDPGYPVYRI--------GTLFAGG--EPYEMPLKEENGFLPDFDAIPEDIAK-KAKLMFI  170 (383)
T ss_pred             HHHHHHHHHhCCCCCEEEEeCCCCcchHH--------HHHhcCC--EEEEEecCcccCCccCHHHHHhhccc-cceEEEE
Confidence            89999999999999999999998765421        2234555  66677776443 56899999988876 8999999


Q ss_pred             cCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCC---CC---cccEEEeccCccc--CCCCceEE
Q 010008          249 GASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP---FK---YCDVVTTTTHKSL--RGPRGGMI  315 (520)
Q Consensus       249 ~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p---~~---~aDiv~~S~hK~l--~GprgG~I  315 (520)
                      ++|+||+  ..+   +++|.++|+++|+++|+|+++. .+.+.+....+   +.   ...+++.|++|++  +|.|.||+
T Consensus       171 ~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~-~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~  249 (383)
T TIGR03540       171 NYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYS-EITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMA  249 (383)
T ss_pred             eCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchh-hhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEE
Confidence            9889997  555   6888899999999999999954 44433311111   11   1237789999987  68899999


Q ss_pred             EeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCC
Q 010008          316 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDN  395 (520)
Q Consensus       316 ~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~  395 (520)
                      ++++      ++.+++.........+.+...+ .+...++... ....++..+++.++++.+.+.|++.|+.+..+. .+
T Consensus       250 i~~~------~l~~~~~~~~~~~~~~~~~~~q-~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~~  320 (383)
T TIGR03540       250 VGNA------DLIAGLGKVKTNVDSGVFQAIQ-YAAIAALNGP-QDVVKEIRKIYQRRRDLLLEALKKIGIDVEKPK-AT  320 (383)
T ss_pred             eCCH------HHHHHHHHHHHhcccCCChHHH-HHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHhCCCEecCCC-cc
Confidence            9887      6666655432111122222223 3333344331 123366677788889999999998888876542 35


Q ss_pred             eeEEEEecCCCCCHHHHHHH-HhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHH
Q 010008          396 HLVLVDLRPMGIDGARVEKI-LDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  465 (520)
Q Consensus       396 ~~~~vd~~~~g~~~~~~~~~-L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~  465 (520)
                      .++|+++. .+++..++.+. |++.||.+.    ||.. +...++++||++.      ..++++++..+.|.
T Consensus       321 ~~~~~~l~-~~~~~~~~~~~ll~~~gi~v~----~g~~f~~~~~~~~Ris~~------~~~~~l~~~l~~l~  381 (383)
T TIGR03540       321 FYVWVPVP-EGYTSAEFAARLLEETGVVVT----PGVGFGEYGEGYIRISLT------VPDERLEEAVARIK  381 (383)
T ss_pred             eEEEEECC-CCCCHHHHHHHHHHHCCEEEe----cchhhCccCCCeEEEEec------CCHHHHHHHHHHHh
Confidence            66788775 35666666655 578999995    4432 2223568999974      23566666555543

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.94  E-value=3.5e-24  Score=225.57  Aligned_cols=336  Identities=15%  Similarity=0.144  Sum_probs=223.5

Q ss_pred             ccceEecCC-C--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--C-CCCceeeecCC
Q 010008           94 KSLELIASE-N--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--E-NKWGVNVQPLS  167 (520)
Q Consensus        94 ~~i~Liase-n--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~-~~~~~~V~~~s  167 (520)
                      +.++|..++ +  .+++.+++++...+.+....+|+.   ..|.   ..+.+...+++++.+|.+  + +    +|.+++
T Consensus        40 ~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~---~~G~---~~LR~aia~~l~~~~g~~~~~~~----~I~it~  109 (405)
T PRK06207         40 RPVDFSHGDVDAHEPTPGAFELFSAGVERGGVQAYTE---YRGD---ADIRELLAARLAAFTGAPVDAAD----ELIITP  109 (405)
T ss_pred             CceecCCcCCCCCCCCHHHHHHHHHHHhcCCCccCCC---CCCC---HHHHHHHHHHHHHHhCCCCCCCC----CEEEeC
Confidence            557777544 4  356788888887765432334543   2232   345556667888888964  3 3    466688


Q ss_pred             hH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccC---C-CCCCCCHHHHHHHhhhcC
Q 010008          168 GS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD---E-STGLVDYDMLEKTAILFR  242 (520)
Q Consensus       168 Gs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d---~-~~~~iD~d~le~~i~~~~  242 (520)
                      |+ +++..++.++++|||+|++++|.|.++..        .+...|.  ++++++++   + +++.+|+++|++++++ +
T Consensus       110 Ga~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~--------~~~~~g~--~v~~v~~~~~~~~~~~~~d~~~l~~~~~~-~  178 (405)
T PRK06207        110 GTQGALFLAVAATVARGDKVAIVQPDYFANRK--------LVEFFEG--EMVPVQLDYLSADKRAGLDLDQLEEAFKA-G  178 (405)
T ss_pred             CcHHHHHHHHHHhcCCCCEEEEeCCCchhHHH--------HHHHcCC--EEEEEeccccCcccCCCcCHHHHHHhhhh-c
Confidence            87 89999999999999999999998765431        2334555  55555554   1 2478999999999877 7


Q ss_pred             CcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCC---Cc-cc--EEEeccCccc--CC
Q 010008          243 PKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KY-CD--VVTTTTHKSL--RG  309 (520)
Q Consensus       243 pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~---~~-aD--iv~~S~hK~l--~G  309 (520)
                      +|+|++++|+||+  .++   +++|.++|+++|++||+|++ |..+++.+....++   .. .|  +++.|++|++  +|
T Consensus       179 ~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~-Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpG  257 (405)
T PRK06207        179 VRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQL-YSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSG  257 (405)
T ss_pred             CeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecc-ccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcc
Confidence            9999999999997  554   77888899999999999998 45555433211111   11 12  7889999986  69


Q ss_pred             CCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEE
Q 010008          310 PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKL  388 (520)
Q Consensus       310 prgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v  388 (520)
                      .|.||+++++      ++.+++.........+.+.. ..+++..+|+.- ...+++..+++.++++.+.+.|.+. |+.+
T Consensus       258 lRiG~ii~~~------~l~~~~~~~~~~~~~~~~~~-~q~a~~~~l~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~  329 (405)
T PRK06207        258 YRLGVAFGSP------AIIDRMEKLQAIVSLRAAGY-SQAVLRTWFSEP-DGWMKDRIARHQAIRDDLLRVLRGVEGVFV  329 (405)
T ss_pred             cceEEEEcCH------HHHHHHHHHHhHhccCCCHH-HHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHhcCCCcee
Confidence            9999999887      66666654322222222222 223333344321 1224666777778888888888774 7776


Q ss_pred             ecCCCCCeeEEEEecCCCCCHHHHHHHH-hhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          389 VSGGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       389 ~~~gt~~~~~~vd~~~~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      ..+ ....++|+++...+++..++.+.| +++||.+    .||.. +...++++||++..      .++++++..+.|.+
T Consensus       330 ~~p-~gg~fl~~~l~~~~~~~~~~~~~l~~~~gV~v----~pG~~F~~~~~~~~Ris~~~------~~~~l~~al~rl~~  398 (405)
T PRK06207        330 RAP-QAGSYLFPRLPRLAVSLHDFVKILRLQAGVIV----TPGTEFSPHTADSIRLNFSQ------DHAAAVAAAERIAQ  398 (405)
T ss_pred             cCC-CeeEEEEEeCcccCCCHHHHHHHHHHhcCEEE----eCchHhCCCCCCeEEEEecC------CHHHHHHHHHHHHH
Confidence            543 234677888864345666666666 5799999    45543 22235789998752      36788888887777


Q ss_pred             HHHH
Q 010008          467 GVEI  470 (520)
Q Consensus       467 ~l~~  470 (520)
                      +++.
T Consensus       399 ~l~~  402 (405)
T PRK06207        399 LIER  402 (405)
T ss_pred             HHHH
Confidence            6653

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.94  E-value=2.7e-24  Score=225.08  Aligned_cols=330  Identities=13%  Similarity=0.093  Sum_probs=214.0

Q ss_pred             ccceEec--CCCCChHHHHHHHhhhhhccCCCCCCCC-CCC---CcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCC
Q 010008           94 KSLELIA--SENFTSRAVMEAVGSCLTNKYSEGLPGK-RYY---GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS  167 (520)
Q Consensus        94 ~~i~Lia--sen~~~~~V~ea~~s~l~~~y~~G~p~~-ryy---~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~s  167 (520)
                      .-|+|.+  --.++++++++|+..+.. .|  +.|.. .+.   +..+.+++    +++.+++++|++.    + +.+++
T Consensus        19 ~~~~~~~~~~~~p~~~~~~~a~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~----l~~~lA~~~g~~~----~-~~~~g   86 (387)
T PRK09331         19 EFINLDPIQRGGILTPEARKALIEYGD-GY--SVCDYCPGRLDQIKKPPIAD----FHEDLAEFLGMDE----A-RVTHG   86 (387)
T ss_pred             cccccChhhcCCCCCHHHHHHHHHHHh-cc--CCCcccccccccccChHHHH----HHHHHHHHhCCCc----E-EEeCC
Confidence            3466654  346889999999998773 22  22211 111   11223344    4478999999975    2 22355


Q ss_pred             hHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccC-CCCCCCCHHHHHHHhhhc-----
Q 010008          168 GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTGLVDYDMLEKTAILF-----  241 (520)
Q Consensus       168 Gs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d-~~~~~iD~d~le~~i~~~-----  241 (520)
                      |++|+.+++.+++++||+|++..+.|.+.+   .     .+...|.  +++.++++ .+++.+|++++++.+++.     
T Consensus        87 ~t~a~~~al~~l~~~gd~Vlv~~~~h~s~~---~-----~~~~~G~--~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~  156 (387)
T PRK09331         87 AREGKFAVMHSLCKKGDYVVLDGLAHYTSY---V-----AAERAGL--NVREVPKTGYPEYKITPEAYAEKIEEVKEETG  156 (387)
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCCchHHHH---H-----HHHHcCC--EEEEEeCccCcCCCcCHHHHHHHHHHhhhccC
Confidence            669999999999999999999887654432   1     2334565  56666552 135789999999998753     


Q ss_pred             -CCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCC-CceEEEe
Q 010008          242 -RPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGP-RGGMIFF  317 (520)
Q Consensus       242 -~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gp-rgG~I~~  317 (520)
                       ++++|++.++++++  ..|+++|.++|+++|+++++|++|+.|....+...   .++|++++|+||++++| ++|++++
T Consensus       157 ~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~~~---~g~D~~~~s~~K~l~~~~~~G~l~~  233 (387)
T PRK09331        157 KPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGKK---LGADFIVGSGHKSMAASAPSGVLAT  233 (387)
T ss_pred             CCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCHHH---cCCCEEEeeCcccccCCCCEEEEEE
Confidence             68999998777654  78999999999999999999999988754222111   16899999999999765 4599999


Q ss_pred             eCCCcchhhHHHhhcccCCCC-------CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEe
Q 010008          318 KKDPVLGVELESAINNAVFPG-------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLV  389 (520)
Q Consensus       318 ~~~~~~~~~l~~~i~~~~~p~-------~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~  389 (520)
                      ++      ++.+.+.+...+.       ..++.....++++..+++.+.. . .+..++..++++++.+.|.+. |++++
T Consensus       234 ~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~-~-~~~~~~~~~~~~~l~~~L~~l~g~~~~  305 (387)
T PRK09331        234 TE------EYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVVE-R-VKRWDEEVKKARWFVDELEKIEGFKQL  305 (387)
T ss_pred             CH------HHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence            87      5555543321110       1112222223333334544321 1 223455677888999999987 99988


Q ss_pred             cCC-CCCeeEEEEec-------CCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHH
Q 010008          390 SGG-SDNHLVLVDLR-------PMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA  461 (520)
Q Consensus       390 ~~g-t~~~~~~vd~~-------~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la  461 (520)
                      ... ..+.++.++..       ..+.++..+.+.|.++||.+    ++.+    ....+|+++     +|.+++|+++++
T Consensus       306 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~----~~~~----~~~i~ri~~-----~g~t~~di~~l~  372 (387)
T PRK09331        306 GEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHG----IKPG----ATKEFKLST-----YGLTWEQVEYVA  372 (387)
T ss_pred             ccCcCcCCeEEEeCCchhHHhhhccccchhHHHHHHHcCceE----EccC----CceEEEEEe-----ccCCHHHHHHHH
Confidence            421 22344444432       11223466888999999984    2211    133467765     456789999999


Q ss_pred             HHHHHHHH
Q 010008          462 DFIHEGVE  469 (520)
Q Consensus       462 ~~i~~~l~  469 (520)
                      +.|.++++
T Consensus       373 ~aL~~i~~  380 (387)
T PRK09331        373 DAFKEIAE  380 (387)
T ss_pred             HHHHHHHH
Confidence            99998765

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.94  E-value=6e-24  Score=220.91  Aligned_cols=332  Identities=14%  Similarity=0.095  Sum_probs=226.5

Q ss_pred             eEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHH
Q 010008           97 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY  176 (520)
Q Consensus        97 ~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l  176 (520)
                      -++++...+++.|+++|...+. .+           ..++.+.++ .+++.+++++|++++.. ..+.+.||++++..++
T Consensus         8 ~~~pgP~~~~~~~~~a~~~~~~-~~-----------~~~~~~~~~-~~~~~l~~l~~~~~~~~-~i~~~~~gt~~l~~~~   73 (368)
T PRK13479          8 LLTPGPLTTSRTVREAMLRDWG-SW-----------DDDFNALTA-SVRAKLVAIATGEEGYT-CVPLQGSGTFSVEAAI   73 (368)
T ss_pred             eecCCCCCCCHHHHHHhCCCCC-CC-----------ChHHHHHHH-HHHHHHHHHhCCCCCce-EEEEcCCcHHHHHHHH
Confidence            4677788889999999876531 11           123445444 56788999999965321 2234567889999999


Q ss_pred             HhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc-CCcEEEEcCCCCCC
Q 010008          177 TAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-RPKLIIAGASAYPR  255 (520)
Q Consensus       177 ~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~-~pklIi~~~s~~p~  255 (520)
                      .+++.+||+|++.++.+.++.   +   .......|.  +++.++++ +++.+|++++++.+++. ++++|++.+++|++
T Consensus        74 ~~l~~~~~~vlv~~~~~~~~~---~---~~~~~~~g~--~~~~i~~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~t  144 (368)
T PRK13479         74 GSLVPRDGKVLVPDNGAYGAR---I---AQIAEYLGI--AHVVLDTG-EDEPPDAAEVEAALAADPRITHVALVHCETTT  144 (368)
T ss_pred             HhccCCCCeEEEEeCCchHHH---H---HHHHHHcCC--cEEEEECC-CCCCCCHHHHHHHHHhCCCCcEEEEEcccCcc
Confidence            999999999998875432210   0   011233454  45555554 34679999999988752 45678787777665


Q ss_pred             --CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhc
Q 010008          256 --DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAIN  332 (520)
Q Consensus       256 --~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~  332 (520)
                        ..|+++|.++|+++|+++++|++|..|....++...   ++|++++|+|||+.||.| |++++++      ++.+++.
T Consensus       145 G~~~~~~~i~~l~~~~~~~livDa~~~~g~~~~~~~~~---~~d~~v~s~~K~l~g~~G~G~l~~~~------~~~~~~~  215 (368)
T PRK13479        145 GILNPLDEIAAVAKRHGKRLIVDAMSSFGAIPIDIAEL---GIDALISSANKCIEGVPGFGFVIARR------SELEACK  215 (368)
T ss_pred             ccccCHHHHHHHHHHcCCEEEEEcccccCCcccccccc---CceEEEecCccccccCCCceEEEECH------HHHHHhh
Confidence              789999999999999999999887666432221111   589999999999988877 9999987      4444433


Q ss_pred             ccCCC----------------CCCCCChHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHHHHHCCCEEecCCC-C
Q 010008          333 NAVFP----------------GLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASRLVELGYKLVSGGS-D  394 (520)
Q Consensus       333 ~~~~p----------------~~~g~p~~~~iaala~al~~~~~~~-~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt-~  394 (520)
                      ....+                ....+++...++++..+++.+...+ +++..+++.++++.+.+.|.+.|++++.+.. .
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  295 (368)
T PRK13479        216 GNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRALGFEPLLDAEIQ  295 (368)
T ss_pred             cCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCcccCCchhc
Confidence            22111                1112567777888888888765443 5777789999999999999999988764321 1


Q ss_pred             -CeeEEEEecC-CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          395 -NHLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       395 -~~~~~vd~~~-~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                       +....+.+.. .+++..++.+.|.+.||.+..    |..  ...+.+|+|+...+    +++|++++++.|+++++.
T Consensus       296 ~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~----g~~--~~~~~iRis~~~~~----t~edi~~~l~~L~~~l~~  363 (368)
T PRK13479        296 SPIIVTFHAPADPAYDFKEFYERLKEQGFVIYP----GKL--TQVDTFRIGCIGDV----DAADIRRLVAAIAEALYW  363 (368)
T ss_pred             CceEEEEECCCCCCcCHHHHHHHHHHCCEEEec----CCC--CCCCEEEEecCCCC----CHHHHHHHHHHHHHHHHH
Confidence             1112222221 235667888899999999954    221  12468999975443    489999999999988763

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=99.94  E-value=8.3e-25  Score=218.70  Aligned_cols=302  Identities=19%  Similarity=0.139  Sum_probs=205.2

Q ss_pred             hhhccccChHHHHHHHHHHHHhhccce-EecCC-C-CChHHHHHHHhhhhhcc-CCCCCCCCCCCCcchhHHHHHHHHHH
Q 010008           71 DYSLGEADPEVCEIITKEKERQFKSLE-LIASE-N-FTSRAVMEAVGSCLTNK-YSEGLPGKRYYGGNEYIDELETLCQK  146 (520)
Q Consensus        71 ~~~l~~~d~~~~~~~~~e~~~~~~~i~-Liase-n-~~~~~V~ea~~s~l~~~-y~~G~p~~ryy~g~~~~d~lE~~a~~  146 (520)
                      .+++....|.+|..+.+.... -...+ |..+. + ++|+-|.+++....... ..+++++   ||-    .++.+..++
T Consensus         9 ~~~l~~~~~~vw~e~~~la~e-~~~~~~LgqGfp~~~~P~fv~ea~~~~~~~~~~~qYt~~---~G~----p~L~~aL~k   80 (420)
T KOG0257|consen    9 NRNLSTSKPYVWTEINRLAAE-HKVPNPLGQGFPDFPPPKFVTEAAKNAAKEPSTNQYTRG---YGL----PQLRKALAK   80 (420)
T ss_pred             cccccccCCcHHHHHHHHHHh-cCCCCcccCCCCCCCCcHHHHHHHHHHhccchhcccccc---CCc----hHHHHHHHH
Confidence            355677788888877554332 23344 76665 3 47888899988776543 1222233   332    234444457


Q ss_pred             HHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccC--
Q 010008          147 RALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD--  223 (520)
Q Consensus       147 ~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d--  223 (520)
                      .+++++|...+- ..+|.+|+|+ +|+..++++++++||+|++++|.+....        ..+.+.|.  .++.++..  
T Consensus        81 ~~se~~~~~~~~-~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~--------~~~~maG~--tpv~v~~~~~  149 (420)
T KOG0257|consen   81 AYSEFYGGLLDP-DDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCYI--------PQVVMAGG--TPVFVPLKPK  149 (420)
T ss_pred             HHHHHhccccCC-cccEEEecCchHHHHHHHHHHcCCCCEEEEecCcchhhh--------hHHhhcCC--cceeeccccc
Confidence            788888875321 1367889999 9999999999999999999999664432        35667776  45555444  


Q ss_pred             -----CCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--C---CCHHHHHHHHHHhCCEEEEechhhcccccccc-cCCC
Q 010008          224 -----ESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--D---FDYPRMRQIADAVGALLMMDMAHISGLVAASV-VADP  292 (520)
Q Consensus       224 -----~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~---~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~~p  292 (520)
                           ..++.+|.++++.++++ |||+|+++.|+||+  .   -.+++|++||++||+++|+|++ |.-+++.+. +.+.
T Consensus       150 ~g~~~s~~~~~D~~~le~~~t~-kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDev-Ye~~v~d~~~h~r~  227 (420)
T KOG0257|consen  150 EGNVSSSDWTLDPEELESKITE-KTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEV-YEWLVYDGNKHIRI  227 (420)
T ss_pred             cccccCccccCChHHHHhhccC-CccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhH-hHHHhhCCCcceee
Confidence                 35689999999999999 99999999999997  3   3688999999999999999998 566676664 3221


Q ss_pred             --CCc---ccEEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccC--CCCCCCCChHHHHHHHHHHHHHh---cC
Q 010008          293 --FKY---CDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAV--FPGLQGGPHNHTIGGLAVCLKHA---QS  360 (520)
Q Consensus       293 --~~~---aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~--~p~~~g~p~~~~iaala~al~~~---~~  360 (520)
                        +++   .-+.++|++|++  +|||.||+++++      .+........  +-....+|..   .|.+.|+...   .+
T Consensus       228 aslPgm~ertitvgS~gKtf~~TGWrlGW~igp~------~L~~~~~~vh~~~~~~~~Tp~q---~A~a~a~~~~~~~~~  298 (420)
T KOG0257|consen  228 ASLPGMYERTITVGSFGKTFGVTGWRLGWAIGPK------HLYSALFPVHQNFVFTCPTPIQ---EASAAAFALELACLQ  298 (420)
T ss_pred             ecCCchhheEEEeccccceeeeeeeeeeeeechH------HhhhhHHHHhhccccccCcHHH---HHHHHHHhhhhhccC
Confidence              132   347789999986  899999999965      3333221110  1111222222   2233333322   11


Q ss_pred             c---hh-HHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEec
Q 010008          361 P---EF-KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLR  403 (520)
Q Consensus       361 ~---~~-~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~  403 (520)
                      +   ++ .++.+.++++++.|++.|.+.|+++..+ ..+.++|+|+.
T Consensus       299 p~~~y~~~~~~~~y~~krdil~k~L~~lg~~v~~p-~gayyl~adfs  344 (420)
T KOG0257|consen  299 PGGSYFITELVKEYKEKRDILAKALEELGLKVTGP-EGAYYLWADFS  344 (420)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccC-CCceEEEEecc
Confidence            2   34 4488999999999999999999998764 34678888987

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.94  E-value=7.9e-24  Score=222.97  Aligned_cols=350  Identities=17%  Similarity=0.082  Sum_probs=231.8

Q ss_pred             hHHHHHHHHHHHHhh------ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHH
Q 010008           79 PEVCEIITKEKERQF------KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALA  150 (520)
Q Consensus        79 ~~~~~~~~~e~~~~~------~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~  150 (520)
                      .+.+..+....++.+      ..|+|..+++.  +++.+.+++...+......+||.    .|   ...+.+...+++.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~i~L~~g~p~~~~~~~~~~~l~~~~~~~~~~~Y~~----~G---~~~lr~aia~~~~~   96 (410)
T PRK06290         24 IYKFEKIKRAKRAAKEKHPDMELIDMGVGEPDEMADESVVEVLCEEAKKPENRGYAD----NG---IQEFKEAAARYMEK   96 (410)
T ss_pred             hhHHHHHHHHHHHHhhhcCCCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC----CC---cHHHHHHHHHHHHH
Confidence            334555544444331      35888887764  57788888876553221223442    12   34566566677777


Q ss_pred             HcCCC---CCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-
Q 010008          151 AFNLD---ENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-  225 (520)
Q Consensus       151 lfg~~---~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-  225 (520)
                      .+|++   ++   -+|.+|+|+ +++..++.++++|||+|++++|.|.+...        .+...|.  +++.++++++ 
T Consensus        97 ~~g~~~~~~~---~~I~it~Gs~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~--------~~~~~g~--~v~~v~~~~~~  163 (410)
T PRK06290         97 VFGVKDIDPV---TEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVTGT--------HTKYYGG--EVYNLPLLEEN  163 (410)
T ss_pred             HcCCCcCCCc---ceEEEccCHHHHHHHHHHHhCCCCCEEEEeCCCCccHHH--------HHHHcCC--EEEEEecCCCc
Confidence            77754   32   147789998 89999999999999999999998765422        2234455  7777777754 


Q ss_pred             CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCC--CC---c
Q 010008          226 TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP--FK---Y  295 (520)
Q Consensus       226 ~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p--~~---~  295 (520)
                      ++.+|++++++.+.. ++|+|+++.|+||+  .++   +++|.++|+++|++||+|+++. .+.+.+..++.  +.   .
T Consensus       164 ~~~~d~~~l~~~~~~-~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~-~~~~~~~~~s~~~~~~~~~  241 (410)
T PRK06290        164 NFLPDLDSIPKDIKE-KAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYA-ALTFDGKPLSFLSVPGAKE  241 (410)
T ss_pred             CCcCCHHHHHHhhcc-cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchh-hceeCCCCcChhcCCCccc
Confidence            467899999998876 89999999999997  555   5677888999999999999954 44443322111  11   2


Q ss_pred             ccEEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010008          296 CDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN  373 (520)
Q Consensus       296 aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~n  373 (520)
                      .+|++.|++|++  +|.|.||+++++      ++.+.+.........+.+...+.+ ...+++.  ....+...+++.++
T Consensus       242 ~~I~i~SfSK~~g~~GlRiG~ii~~~------~l~~~l~~~~~~~~~~~~~~~q~a-a~~~l~~--~~~~~~~~~~~~~~  312 (410)
T PRK06290        242 VGVEIHSLSKAYNMTGWRLAFVVGNE------LIVKAFATVKDNNDSGQFIAIQKA-GIYALDH--PEITEKIREKYSRR  312 (410)
T ss_pred             cEEEEeechhhcCCchhheEeEEeCH------HHHHHHHHHHhccccCCcHHHHHH-HHHHhhC--cHHHHHHHHHHHHH
Confidence            458999999986  789999999987      666666544333223332233332 2223432  12235677888889


Q ss_pred             HHHHHHHHHHCCCEEecCCCCCeeEEEEecCCC------CCHHHHHHHHhhc-CeEEcCCCCCCCCCCCCCCEEEEccCC
Q 010008          374 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMG------IDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPA  446 (520)
Q Consensus       374 a~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g------~~~~~~~~~L~~~-gI~v~~~~~Pg~~~~~~~~giRig~~~  446 (520)
                      ++.+.+.|++.|+.+..+ ..+.++|+++...-      .+..++.+.|.+. +|.+    +||..  + .+++||++..
T Consensus       313 ~~~l~~~L~~~g~~~~~p-~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~----~p~~~--~-~~~lRi~~~~  384 (410)
T PRK06290        313 LDKLVKILNEVGFKAEMP-GGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLIST----VPWDD--A-GHFLRFSVTF  384 (410)
T ss_pred             HHHHHHHHHhCCCeecCC-CeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEE----ECCcc--c-cCeEEEEEEc
Confidence            999999999888876543 23456677775321      2455666666554 5554    46542  2 3689998754


Q ss_pred             ccccCCCHHHHHHHHHHHHHHHHH
Q 010008          447 MTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       447 ~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      .+   -++++++++.+.+.+.++.
T Consensus       385 ~~---~~~~~~~~~~~~l~~~~~~  405 (410)
T PRK06290        385 EA---KDEEEEDRILEEIKRRLSD  405 (410)
T ss_pred             cc---ccccchhHHHHHHHHHHhh
Confidence            33   3589999999999988864

>PRK07682 hypothetical protein; Validated

Probab=99.94  E-value=6.4e-24  Score=221.54  Aligned_cols=336  Identities=15%  Similarity=0.119  Sum_probs=224.7

Q ss_pred             hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCceeeecCCh
Q 010008           93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG  168 (520)
Q Consensus        93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~sG  168 (520)
                      .+.|+|..+++.  +++.+.+++...+.+.+ .+|+.      ......+++...+++.+.+|.+  +++   +|.+++|
T Consensus        20 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~------~~g~~~lr~~ia~~~~~~~g~~~~~~~---~i~~t~G   89 (378)
T PRK07682         20 EGVISLGVGEPDFVTPWNVREASIRSLEQGY-TSYTA------NAGLLELRQEIAKYLKKRFAVSYDPND---EIIVTVG   89 (378)
T ss_pred             CCeEEeCCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC------CCCcHHHHHHHHHHHHHHhCCCCCCCC---cEEEeCC
Confidence            356889888864  46677888877665332 23432      1223466666667888877764  321   4566887


Q ss_pred             H-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEE
Q 010008          169 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       169 s-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklI  246 (520)
                      + +|+.+++.++++|||+|++++|+|+....        .....|.  +++.++++.+ ++.+|++++++++.+ ++++|
T Consensus        90 ~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v  158 (378)
T PRK07682         90 ASQALDVAMRAIINPGDEVLIVEPSFVSYAP--------LVTLAGG--VPVPVATTLENEFKVQPAQIEAAITA-KTKAI  158 (378)
T ss_pred             hHHHHHHHHHHhCCCCCEEEEeCCCchhhHH--------HHHHcCC--EEEEeecCCccCCCCCHHHHHhhcCc-ccEEE
Confidence            6 89999999999999999999998764321        2233454  5556666533 478999999999877 89999


Q ss_pred             EEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCC--CCC---cccEEEeccCccc--CCCCceE
Q 010008          247 IAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK---YCDVVTTTTHKSL--RGPRGGM  314 (520)
Q Consensus       247 i~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~--p~~---~aDiv~~S~hK~l--~GprgG~  314 (520)
                      +++.|+||+  .+   ++++|.++|+++|+++|+|+++ .++.+.+...+  .+.   ...+++.|++|++  +|.|.||
T Consensus       159 ~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~  237 (378)
T PRK07682        159 LLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIY-AELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGF  237 (378)
T ss_pred             EEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhh-hhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhh
Confidence            888899987  44   4888999999999999999994 45554332111  111   2347889999986  6889999


Q ss_pred             EEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCC
Q 010008          315 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD  394 (520)
Q Consensus       315 I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~  394 (520)
                      +++++      ++.+++.........+.+...+.+ ...+|+.. ....+...+++.++++.+.+.|.+.|+.+..+ ..
T Consensus       238 ~~~~~------~~i~~l~~~~~~~~~~~~~~~q~a-~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p-~g  308 (378)
T PRK07682        238 IAAPV------YFSEAMLKIHQYSMMCAPTMAQFA-ALEALRAG-NDDVIRMRDSYRKRRNFFVTSFNEIGLTCHVP-GG  308 (378)
T ss_pred             hhcCH------HHHHHHHHHHHhhccCCCHHHHHH-HHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHCCCccCCC-Ce
Confidence            99987      666665433221122333333333 33345421 12346667788899999999999888876544 23


Q ss_pred             CeeEEEEecCCCCCHHHHHHH-HhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          395 NHLVLVDLRPMGIDGARVEKI-LDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       395 ~~~~~vd~~~~g~~~~~~~~~-L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +++.|+++.+.+++..++.+. |++.||.+.    ||.. +...++++||++.      .+++++++..+.|.++++
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~----pg~~f~~~~~~~iRis~~------~~~~~l~~~l~~l~~~l~  375 (378)
T PRK07682        309 AFYAFPSISSTGLSSEEFAEQLLLEEKVAVV----PGSVFGESGEGFIRCSYA------TSLEQLQEAMKRMKRFVE  375 (378)
T ss_pred             eEEEEEeccCCCCCHHHHHHHHHHhCCEEEc----CchhhCcCCCCeEEEEeC------CCHHHHHHHHHHHHHHHh
Confidence            455666665445666666655 568899995    4432 2223679999864      236888888888887765

>PRK07337 aminotransferase; Validated

Probab=99.94  E-value=4.1e-24  Score=223.80  Aligned_cols=335  Identities=14%  Similarity=0.124  Sum_probs=218.9

Q ss_pred             hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceeeecCCh
Q 010008           93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSG  168 (520)
Q Consensus        93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V~~~sG  168 (520)
                      .+.++|..+++.  .++.+.+++...+.+.. .+|+.      ......+++...+++.+.+|+  +++    +|.+++|
T Consensus        30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~------~~g~~~lr~~ia~~~~~~~~~~~~~~----~i~~t~G   98 (388)
T PRK07337         30 RDIIHMGIGEPDFTAPEPVVEAAARALRRGV-TQYTS------ALGLAPLREAIAAWYARRFGLDVAPE----RIVVTAG   98 (388)
T ss_pred             CCEEEeCCcCCCCCCCHHHHHHHHHHHhcCC-CCCCC------CCCCHHHHHHHHHHHHHHhCCCCChH----hEEEecC
Confidence            356888777653  57888999887765321 22332      122345655555777777776  444    5566777


Q ss_pred             H-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEE
Q 010008          169 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       169 s-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklI  246 (520)
                      + +|+..++.+++++||+|++++|+|.++..        .+...|.  +++.++++++ ++.+|++++++.+.+ ++++|
T Consensus        99 ~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v  167 (388)
T PRK07337         99 ASAALLLACLALVERGDEVLMPDPSYPCNRH--------FVAAAEG--RPVLVPSGPAERFQLTAADVEAAWGE-RTRGV  167 (388)
T ss_pred             cHHHHHHHHHHhcCCCCEEEEeCCCchhhHH--------HHHHcCC--EEEEeecCCccCCcCCHHHHHhhcCc-cceEE
Confidence            7 89999999999999999999998875421        1223454  5666667643 468999999999987 88999


Q ss_pred             EEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-ccc-EEEeccCccc--CCCCceEEEe
Q 010008          247 IAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCD-VVTTTTHKSL--RGPRGGMIFF  317 (520)
Q Consensus       247 i~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aD-iv~~S~hK~l--~GprgG~I~~  317 (520)
                      +++.|+||+  ..   ++++|.++|+++|+++++|+++ .++.+.+...+.+. +.+ +++.|++|++  +|.|.||+++
T Consensus       168 ~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~~~  246 (388)
T PRK07337        168 LLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIY-QGLSYDAAPVSALSLGDDVITINSFSKYFNMTGWRLGWLVV  246 (388)
T ss_pred             EEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccc-cccccCCCCcChhhccCCEEEEEechhhcCCchhheeeeec
Confidence            999899987  34   4678889999999999999984 45544332222222 234 4578999987  6899999999


Q ss_pred             eCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCee
Q 010008          318 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL  397 (520)
Q Consensus       318 ~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~  397 (520)
                      ++      ++.+++.........+.+...+.++. .++..-....+++..+++.++++.+.+.|++.|+.+......+.+
T Consensus       247 ~~------~l~~~l~~~~~~~~~~~s~~~q~~~~-~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~f  319 (388)
T PRK07337        247 PE------ALVGTFEKLAQNLFICASALAQHAAL-ACFEPDTLAIYERRRAEFKRRRDFIVPALESLGFKVPVMPDGAFY  319 (388)
T ss_pred             CH------HHHHHHHHHHHHhccCCChHHHHHHH-HHhccCchHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCeeEE
Confidence            87      66666554332222233333344332 234321112345667778888899999998888764221234567


Q ss_pred             EEEEecCC----CCCHHHHH-HHHhhcCeEEcCCCCCCCC-C-CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          398 VLVDLRPM----GIDGARVE-KILDMASITLNKNSVPGDK-S-ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       398 ~~vd~~~~----g~~~~~~~-~~L~~~gI~v~~~~~Pg~~-~-~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      +|++++..    .++..++. ++|+++||.+.    ||.. + ....+++||+...      .++++++..+.|.++
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~----pg~~f~~~~~~~~~Ri~~~~------~~~~l~~~l~rl~~~  386 (388)
T PRK07337        320 VYADCRGVAHPAAGDSAALTQAMLHDAGVVLV----PGRDFGPHAPRDYIRLSYAT------SMSRLEEAVARLGKL  386 (388)
T ss_pred             EEEecccccCCCCCCHHHHHHHHHHhCCEEEe----CchhhCCCCCCCEEEEEecC------CHHHHHHHHHHHHHH
Confidence            88888532    24555554 55788999994    4433 1 1135799998652      356777766666554

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.94  E-value=3.4e-24  Score=220.64  Aligned_cols=319  Identities=19%  Similarity=0.188  Sum_probs=215.3

Q ss_pred             hHHHHHHHhhhhhccCCCCCCCCCCCCc-chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCC
Q 010008          106 SRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHD  184 (520)
Q Consensus       106 ~~~V~ea~~s~l~~~y~~G~p~~ryy~g-~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD  184 (520)
                      +|.|++++...+.+ |..++.+.+++.| ++....++    +.+++++|++.     .+.+++|++++.+++.++++|||
T Consensus        17 ~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~----~~la~~~~~~~-----~iv~~sg~~a~~~~~~~~~~~gd   86 (349)
T cd06454          17 HPEVIEAAKEALDK-YGVGAGGSRLISGTSDLHEELE----EELAEFHGKEA-----ALVFSSGYAANDGVLSTLAGKGD   86 (349)
T ss_pred             CHHHHHHHHHHHHH-hCCCCCCcCeecCCchHHHHHH----HHHHHHhCCCC-----EEEeccHHHHHHHHHHHhcCCCC
Confidence            58899999998864 4443333333333 44444444    67889999863     35568999999988899999999


Q ss_pred             EEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh----cCCcEEEEcCCCCCC--CCC
Q 010008          185 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL----FRPKLIIAGASAYPR--DFD  258 (520)
Q Consensus       185 ~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~----~~pklIi~~~s~~p~--~~d  258 (520)
                      +|++.++.|.+...        .....|.  +++.++      .+|++++++++++    .++++++++++++++  ..|
T Consensus        87 ~Vl~~~~~~~~~~~--------~~~~~g~--~~~~~~------~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~  150 (349)
T cd06454          87 LIISDSLNHASIID--------GIRLSGA--KKRIFK------HNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAP  150 (349)
T ss_pred             EEEEehhhhHHHHH--------HHHHcCC--ceEEec------CCCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccC
Confidence            99999887654321        1223444  344432      3588889988875    357788887766654  789


Q ss_pred             HHHHHHHHHHhCCEEEEechhhcccccccc-----cCCCCCcccEEEeccCcccCCCCceEEEeeCCCcchhhHHHhhcc
Q 010008          259 YPRMRQIADAVGALLMMDMAHISGLVAASV-----VADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINN  333 (520)
Q Consensus       259 ~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-----~~~p~~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i~~  333 (520)
                      +++|+++|+++|+++|+|++|..|......     ......+.|++++|+||++. ++||+++.++      ++.+.+..
T Consensus       151 ~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~gG~i~~~~------~~~~~~~~  223 (349)
T cd06454         151 LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFG-AVGGYIAGSK------ELIDYLRS  223 (349)
T ss_pred             HHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhc-ccCCEEECCH------HHHHHHHH
Confidence            999999999999999999998777553210     01111267899999999985 4789988877      56555544


Q ss_pred             cCCCC-CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHH
Q 010008          334 AVFPG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARV  412 (520)
Q Consensus       334 ~~~p~-~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~  412 (520)
                      ...+. ..++.+...++++..+++....  ++...+++.++++.+.+.|.+.|+.++.++ .+.+.++.+ ..+.+.+++
T Consensus       224 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~~~~~~~~-~~~~~~~~~  299 (349)
T cd06454         224 YARGFIFSTSLPPAVAAAALAALEVLQG--GPERRERLQENVRYLRRGLKELGFPVGGSP-SHIIPPLIG-DDPAKAVAF  299 (349)
T ss_pred             hchhhhccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhcCCcccCCC-CCcEEEEeC-CChHHHHHH
Confidence            33322 2234555566666677876543  466788899999999999988888766542 223222222 223345778


Q ss_pred             HHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          413 EKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       413 ~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      .+.|.+.||.+.....+.  .....+.||++++...    +++|++++++.|+++
T Consensus       300 ~~~L~~~gI~~~~~~~~~--~~~~~~~iRi~~~~~~----~~~~i~~~~~~l~~~  348 (349)
T cd06454         300 SDALLERGIYVQAIRYPT--VPRGTARLRISLSAAH----TKEDIDRLLEALKEV  348 (349)
T ss_pred             HHHHHhCCceEEEecCCc--cCCCCCeEEEEEeCCC----CHHHHHHHHHHHHHh
Confidence            888888899996532111  1122468999986543    489999999998753

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.94  E-value=2.1e-24  Score=219.69  Aligned_cols=323  Identities=18%  Similarity=0.184  Sum_probs=228.2

Q ss_pred             CCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-C
Q 010008          102 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-L  180 (520)
Q Consensus       102 en~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al-l  180 (520)
                      ........++++..+|.+.+-..         -+++.++|    +.+++++|+.+.     |.+.|||.|+++++.+| +
T Consensus        10 ~p~i~~~e~~~v~~vl~sg~i~~---------G~~v~~FE----~~~ae~~G~k~a-----va~~sgT~AL~laL~al~i   71 (374)
T COG0399          10 RPSIGEEELAAVQEVLKSGWLTG---------GPFVRRFE----QAFAEYLGVKYA-----VAVSSGTAALHLALLALAI   71 (374)
T ss_pred             CCCcchHHHHHHHHHHHcCCeec---------ChHHHHHH----HHHHHHhCCCeE-----EEecChHHHHHHHHHhcCC
Confidence            33456777888888887765221         25678888    578899999983     56799999999999977 7


Q ss_pred             CCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHH
Q 010008          181 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYP  260 (520)
Q Consensus       181 ~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~  260 (520)
                      .|||+|++++.++-++.        ..+...|.  +++++++|++++.+|++.||++|++ +||+|+.. +-++...|++
T Consensus        72 g~GDeVI~ps~TfvATa--------n~i~~~Ga--~PVFvDid~~T~nid~~~ie~aIt~-~tKAIipV-hl~G~~~dm~  139 (374)
T COG0399          72 GPGDEVIVPSFTFVATA--------NAVLLVGA--KPVFVDIDPDTLNIDPDLIEAAITP-RTKAIIPV-HLAGQPCDMD  139 (374)
T ss_pred             CCCCEEEecCCchHHHH--------HHHHHcCC--eEEEEecCCcccCCCHHHHHHHccc-CCeEEEEe-hhccCCCCHH
Confidence            99999999998765432        24556676  9999999999999999999999999 89999873 4456678999


Q ss_pred             HHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccC--cccCCCCceEEEeeCCCcchhhHHHhhcccCCCC
Q 010008          261 RMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPG  338 (520)
Q Consensus       261 ~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~h--K~l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~  338 (520)
                      +|.+||++||++||.|+||+.|..+.|.....  ..|+.++|||  |.++...||+++++++     ++.++++...+.|
T Consensus       140 ~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt--~Gd~~~fSF~~~K~ittgEGGav~tnd~-----ela~k~~~lr~hG  212 (374)
T COG0399         140 AIMALAKRHGLPVIEDAAQAHGATYKGKKVGS--FGDIGAFSFHATKNLTTGEGGAVVTNDE-----ELAEKARSLRNHG  212 (374)
T ss_pred             HHHHHHHHcCCeEEEEcchhccCeecCccccc--ccceEEEEecCCCCccccCceEEEeCCH-----HHHHHHHHHHHhC
Confidence            99999999999999999999999888754332  4678888877  9896669999999997     7777765433333


Q ss_pred             CCC-----------C--ChH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecC--CC--CCeeEE
Q 010008          339 LQG-----------G--PHN-HTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSG--GS--DNHLVL  399 (520)
Q Consensus       339 ~~g-----------~--p~~-~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~--gt--~~~~~~  399 (520)
                      ...           |  ..+ ...||+.  +.++  ...++..++..++++.+.+.|++. ++.+...  +.  .-|++.
T Consensus       213 ~~~~~~~~y~~~~~G~N~rm~~iqAAig--l~QL--~~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~  288 (374)
T COG0399         213 LSRDAVFKYLHEELGYNYRLTEIQAAIG--LAQL--ERLDEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYT  288 (374)
T ss_pred             cCCCccccceeeecccccCHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeE
Confidence            211           1  112 2233333  2222  334566777777788888888774 4444332  21  124444


Q ss_pred             EEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCC-------C-----------CCCCEEEEccCCccccCCCHHHHHHHH
Q 010008          400 VDLRPMGIDGARVEKILDMASITLNKNSVPGDKS-------A-----------LVPGGIRIGSPAMTTRGFSEKEFVAIA  461 (520)
Q Consensus       400 vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~-------~-----------~~~~giRig~~~~tt~g~~~~d~~~la  461 (520)
                      +-+...+++.+.+.+.|++.||.......|-+..       .           .....+++.+  .  -+++++|+++++
T Consensus       289 i~~~~~~~~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~--~--p~l~~~~~~~V~  364 (374)
T COG0399         289 ILVDEEGISRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPL--H--PNLSEEDVDRVI  364 (374)
T ss_pred             EEecCCCCCHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccC--C--CCCCHHHHHHHH
Confidence            5454445778889999999988754433442211       0           0122345432  2  257899999999


Q ss_pred             HHHHHHHH
Q 010008          462 DFIHEGVE  469 (520)
Q Consensus       462 ~~i~~~l~  469 (520)
                      +.|.+++.
T Consensus       365 ~~l~~~~~  372 (374)
T COG0399         365 EALKEVLG  372 (374)
T ss_pred             HHHHHHhc
Confidence            99998875

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.94  E-value=8.3e-24  Score=229.33  Aligned_cols=360  Identities=16%  Similarity=0.107  Sum_probs=225.1

Q ss_pred             hhhccccChHHHHHHHHHHHHh----hccceEecCCC-----CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHH
Q 010008           71 DYSLGEADPEVCEIITKEKERQ----FKSLELIASEN-----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELE  141 (520)
Q Consensus        71 ~~~l~~~d~~~~~~~~~e~~~~----~~~i~Liasen-----~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE  141 (520)
                      .+++..+.+++...+..+.++.    .+.|+|..++.     .+|+.+++++...+...  .+|+..   .|   ..++.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~~--~~Y~~~---~G---~~~lR  191 (517)
T PRK13355        120 SHKLDNVLYDVRGPVVDEANRMEAAGTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTDT--EGYSDS---KG---LFSAR  191 (517)
T ss_pred             hHHhhccCccHHHHHHHHHHHHHHcCCCeEEecCcCCCcCCCCCCHHHHHHHHHHhhcC--CCCCCC---cC---hHHHH
Confidence            4556666666554333333322    25688887543     25889999988766432  245431   12   33454


Q ss_pred             HHHHHHHHHHc--CCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEE
Q 010008          142 TLCQKRALAAF--NLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESM  218 (520)
Q Consensus       142 ~~a~~~~~~lf--g~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v  218 (520)
                      +...+++.+..  +++++    +|.+++|+ +++..++.++++|||+|++++|.|..+.        ..+...|.  +++
T Consensus       192 eaia~~~~~~~~~~~~~~----~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~--------~~~~~~g~--~~v  257 (517)
T PRK13355        192 KAIMQYAQLKGLPNVDVD----DIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWT--------ACVNLAGG--TAV  257 (517)
T ss_pred             HHHHHHHHhcCCCCCChh----HEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHH--------HHHHHCCC--EEE
Confidence            44445555444  34554    67779998 8999999999999999999999875432        12344565  667


Q ss_pred             EcccCCC-CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccc-cCC
Q 010008          219 PYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VAD  291 (520)
Q Consensus       219 ~~~~d~~-~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~~  291 (520)
                      .++++++ ++.+|++++++.+++ ++|+|++++|+||+  .++   +++|.++|+++|++||+|++ |..+++.+. +.+
T Consensus       258 ~~~~~~~~~~~~d~~~l~~~~~~-~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~-Y~~~~~~~~~~~s  335 (517)
T PRK13355        258 HYRCDEQSEWYPDIDDIRSKITS-RTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEI-YDRLVMDGLEHTS  335 (517)
T ss_pred             EeecCcccCCCCCHHHHHHhcCc-CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehh-hhhhcCCCCCccc
Confidence            7777654 478999999999987 89999999999997  555   78889999999999999999 455555442 222


Q ss_pred             CCC-ccc---EEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHH
Q 010008          292 PFK-YCD---VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV  365 (520)
Q Consensus       292 p~~-~aD---iv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~  365 (520)
                      ... ..|   +++.|++|++  +|+|.||++.+.+.....++.+.++...... .+. +.....+...+|...  ..+.+
T Consensus       336 ~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~~~~~-~~~-~~~~q~a~~~aL~~~--~~~~~  411 (517)
T PRK13355        336 IASLAPDLFCVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEGLNMLANMR-LCS-NVPAQSIVQTALGGH--QSVKD  411 (517)
T ss_pred             HHHhCCCCeEEEEecchhhccCcccceEEEEeeCchhhHHHHHHHHHHHhcCc-CCc-ChHHHHHHHHHhcCC--ccHHH
Confidence            111 123   3358999984  8999999996531100002333332211111 122 222223333345321  11222


Q ss_pred             H---HHHHHHHHHHHHHHHHHC-CCEEecCCCCCeeEEEEecCCC---CC-HHHHHHHHhhcCeEEcCCCCCCCC-CCCC
Q 010008          366 Y---QNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVLVDLRPMG---ID-GARVEKILDMASITLNKNSVPGDK-SALV  436 (520)
Q Consensus       366 ~---~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~~~~vd~~~~g---~~-~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~  436 (520)
                      +   .+++.++++.+.+.|.+. |+.+..+ ..++++|+++....   .+ .+.+.++|++.||.|    .||.. +...
T Consensus       412 ~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p-~g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v----~pg~~F~~~~  486 (517)
T PRK13355        412 YLVPGGRVYEQRELVYNALNAIPGISAVKP-KAAFYIFPKIDVKKFNIHDDEQFALDLLHDKKVLI----VQGTGFNWDK  486 (517)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcccCCC-CeeeEEEeecCcccCCCCCHHHHHHHHHHhCCEEE----eCcchhCCCC
Confidence            2   234556678888889875 8876654 23566676764321   12 345678899999999    45543 2224


Q ss_pred             CCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          437 PGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       437 ~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ++++||++.      ..++++++.++.|.+.+.
T Consensus       487 ~~~~Ris~~------~~~~~l~~a~~rl~~~~~  513 (517)
T PRK13355        487 PDHFRVVYL------PRLEDLEDAMDRLADFFS  513 (517)
T ss_pred             cCEEEEEeC------CCHHHHHHHHHHHHHHHH
Confidence            679999863      347888888888887765

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.94  E-value=1e-23  Score=220.61  Aligned_cols=357  Identities=13%  Similarity=0.110  Sum_probs=226.0

Q ss_pred             chhhhhccccChHHHHHHHHHHHHhhccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHH
Q 010008           68 SFVDYSLGEADPEVCEIITKEKERQFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQ  145 (520)
Q Consensus        68 ~~~~~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~  145 (520)
                      +++.+++.......+..+..........++|..+++.  .++.+++++.+.+.+.. ..|+.      ......+++...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~-~~Y~~------~~G~~~lr~~ia   76 (384)
T PRK06348          4 KFLAKKYQQMEVNIMAEIATLAKKFPDIIDLSLGDPDLITDESIINAAFEDAKKGH-TRYTD------SGGDVELIEEII   76 (384)
T ss_pred             hHHHHHHhcCCccHHHHHHHHHHhcCCcEEcCCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC------CCCcHHHHHHHH
Confidence            4445556555665555444433322356888777653  45677776554443221 12332      222235555556


Q ss_pred             HHHHHHcCC--CCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEccc
Q 010008          146 KRALAAFNL--DENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL  222 (520)
Q Consensus       146 ~~~~~lfg~--~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~  222 (520)
                      +++.+.+|.  +++    +|.+++|+ +|+..++.++++|||+|++++|.|.++..        .+...|.  +++++++
T Consensus        77 ~~~~~~~~~~~~~~----~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~--------~~~~~g~--~~~~~~~  142 (384)
T PRK06348         77 KYYSKNYDLSFKRN----EIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKD--------QIEMVGG--KPIILET  142 (384)
T ss_pred             HHHHHHhCCCCChh----hEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHH--------HHHHcCC--EEEEecC
Confidence            777766665  454    56678888 89999999999999999999998865532        2233454  5666665


Q ss_pred             CC-CCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCC--CCC
Q 010008          223 DE-STGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK  294 (520)
Q Consensus       223 d~-~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~--p~~  294 (520)
                      ++ +++.+|++++++.+++ ++|+|+++.|+||+  ..   ++++|.++|+++|++||+|++ |.++.+.+....  .+.
T Consensus       143 ~~~~~~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~-y~~~~~~~~~~~~~~~~  220 (384)
T PRK06348        143 YEEDGFQINVKKLEALITS-KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEV-YDGFSFYEDFVPMATLA  220 (384)
T ss_pred             CcCcCCcCCHHHHHHhhCc-CccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecc-cccceeCCCccchhhcC
Confidence            42 3467999999998876 89999998999997  44   477888899999999999998 455554332111  111


Q ss_pred             ---cccEEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHH
Q 010008          295 ---YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK  369 (520)
Q Consensus       295 ---~aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~  369 (520)
                         ...+++.|++|++  +|.|.||+++++      ++.+.+.........+.+...+.+ .+.++... ....++..+.
T Consensus       221 ~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~------~~~~~~~~~~~~~~~~~~~~~q~~-~~~~l~~~-~~~~~~~~~~  292 (384)
T PRK06348        221 GMPERTITFGSFSKDFAMTGWRIGYVIAPD------YIIETAKIINEGICFSAPTISQRA-AIYALKHR-DTIVPLIKEE  292 (384)
T ss_pred             CCcCcEEEEecchhccCCccccceeeecCH------HHHHHHHHHHHhccCCCCHHHHHH-HHHHHhCc-HHHHHHHHHH
Confidence               1237789999986  689999999987      676666543322112333333333 33344321 1123556667


Q ss_pred             HHHHHHHHHHHHHHC-CCEEecCCCCCeeEEEEecCCCCCHHHHHHH-HhhcCeEEcCCCCCCCC-CCCCCCEEEEccCC
Q 010008          370 VVSNCRALASRLVEL-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKI-LDMASITLNKNSVPGDK-SALVPGGIRIGSPA  446 (520)
Q Consensus       370 i~~na~~l~~~L~~~-G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~-L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~  446 (520)
                      +.++++.+.+.|.+. |+.+..+ ..+.++|+++...+++..++.+. ++++||.+.    ||+. +...+++|||++. 
T Consensus       293 ~~~r~~~~~~~L~~~~~~~~~~p-~gg~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~----pg~~f~~~~~~~iRi~~~-  366 (384)
T PRK06348        293 FQKRLEYAYKRIESIPNLSLHPP-KGSIYAFINIKKTGLSSVEFCEKLLKEAHVLVI----PGKAFGESGEGYIRLACT-  366 (384)
T ss_pred             HHHHHHHHHHHHhcCCCceeccC-CeeEEEEEecccCCCCHHHHHHHHHHhCCEEEc----CchhhccCCCCeEEEEec-
Confidence            777788888988774 6665443 23556677875445666666655 467899994    5543 2223578999863 


Q ss_pred             ccccCCCHHHHHHHHHHHHH
Q 010008          447 MTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       447 ~tt~g~~~~d~~~la~~i~~  466 (520)
                           .+++++++..+.|.+
T Consensus       367 -----~~~~~l~~al~~l~~  381 (384)
T PRK06348        367 -----VGIEVLEEAFNRIEK  381 (384)
T ss_pred             -----CCHHHHHHHHHHHHh
Confidence                 235777776666643

>TIGR01814 kynureninase kynureninase

Probab=99.93  E-value=7.7e-24  Score=223.09  Aligned_cols=338  Identities=15%  Similarity=0.092  Sum_probs=220.9

Q ss_pred             ccceEe-cCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHH
Q 010008           94 KSLELI-ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN  172 (520)
Q Consensus        94 ~~i~Li-asen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~  172 (520)
                      +.+.|. .+-.++|+.|.+++..++.. |..+..+.++.+...+....+ .. +.+ +++|++++++   +...++|+++
T Consensus        27 ~~iyld~~a~g~~p~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~-~~~-~l~g~~~~~v---~~~~~~t~~l   99 (406)
T TIGR01814        27 AVIYLDGNSLGLMPKAARNALKEELDK-WAKIAIRGHNTGKAPWFTLDE-SL-LKL-RLVGAKEDEV---VVMNTLTINL   99 (406)
T ss_pred             CcEEecCCCcCcCcHHHHHHHHHHHHH-HHHhhhccCccCCCChhhhhh-hh-ccc-cccCCCCCcE---EEeCCchHHH
Confidence            457887 55567899999999877643 322211112221122222222 22 335 8999988643   2234455888


Q ss_pred             HHHHHhhCCCCC---EEEEcCCCCCccccccccccccccccccceEE--EEEcccCCCCCCCCHHHHHHHhhh--cCCcE
Q 010008          173 FEVYTAILKPHD---RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE--SMPYRLDESTGLVDYDMLEKTAIL--FRPKL  245 (520)
Q Consensus       173 ~~~l~all~pGD---~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~--~v~~~~d~~~~~iD~d~le~~i~~--~~pkl  245 (520)
                      ..++.++++|||   .|++.+.+|++.+....    ......|..+.  .+.++.+ +++.+|++++++.++.  .++++
T Consensus       100 ~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~----~~~~~~g~~~~~~~~~~~~~-~~g~~~~~~l~~~~~~~~~~t~l  174 (406)
T TIGR01814       100 HLLLASFYKPTPKRYKILLEAKAFPSDHYAIE----SQLQLHGLTVEESMVQIEPR-EEETLRLEDILDTIEKNGDDIAV  174 (406)
T ss_pred             HHHHHHhcCCcCCccEEEecCCCCChHHHHHH----HHHHhcCCCcccceEEeccC-CCCccCHHHHHHHHHhcCCCeEE
Confidence            888888877753   57766666655321110    01122343221  1233333 3578899999888752  27889


Q ss_pred             EEEcCCCCC--CCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCceEEEeeCCCcc
Q 010008          246 IIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVL  323 (520)
Q Consensus       246 Ii~~~s~~p--~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~GprgG~I~~~~~~~~  323 (520)
                      |++++.++.  ...|+++|+++|+++|+++++|++|+.|.+..++...   ++|++++|+||||.||.||.++..++   
T Consensus       175 v~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~---gvD~~~~s~hK~l~g~pG~~l~v~~~---  248 (406)
T TIGR01814       175 ILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDW---GVDFACWCTYKYLNAGPGAGAFVHEK---  248 (406)
T ss_pred             EEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccccC---CCCEEEEcCccccCCCCCeEEEEehh---
Confidence            988866554  3889999999999999999999999999875544322   68999999999997666766666553   


Q ss_pred             hhhHHHhhcccC-----------C-----------CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 010008          324 GVELESAINNAV-----------F-----------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRL  381 (520)
Q Consensus       324 ~~~l~~~i~~~~-----------~-----------p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L  381 (520)
                        .+ ..+....           |           ....|+|+...++++..|++.+...+.+...++....++++.+.|
T Consensus       249 --~~-~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l  325 (406)
T TIGR01814       249 --HA-HTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELI  325 (406)
T ss_pred             --hh-hhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence              11 1111000           0           011478899999999999998876677777888888888888888


Q ss_pred             HHC-----CCEEecCCC---CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEcc-CCccccCC
Q 010008          382 VEL-----GYKLVSGGS---DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS-PAMTTRGF  452 (520)
Q Consensus       382 ~~~-----G~~v~~~gt---~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~-~~~tt~g~  452 (520)
                      .+.     |++++++..   ...++.+.+.   ++++++.+.|.+.||.+...         .++.||+|. +.+|+   
T Consensus       326 ~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~---~~~~~~~~~L~~~gi~v~~~---------~~~~iRiS~~~~~nt---  390 (406)
T TIGR01814       326 KARCGGPPVLTIITPRDHAQRGCQLSLTHP---VPGKAVFQALIKRGVIGDKR---------EPSVIRVAPVPLYNT---  390 (406)
T ss_pred             HhhcCCCCceEEeCCCChhhcCCeEEEEec---CCHHHHHHHHHHCCEEEecc---------CCCeEEEechhccCC---
Confidence            763     477776421   1234444443   46788888999999988421         246899998 55665   


Q ss_pred             CHHHHHHHHHHHHHHH
Q 010008          453 SEKEFVAIADFIHEGV  468 (520)
Q Consensus       453 ~~~d~~~la~~i~~~l  468 (520)
                       ++|++++++.|++++
T Consensus       391 -~~did~l~~~l~~~~  405 (406)
T TIGR01814       391 -FVDVYDAVNVLEEIL  405 (406)
T ss_pred             -HHHHHHHHHHHHHHh
Confidence             899999999998754

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.93  E-value=2e-24  Score=223.19  Aligned_cols=299  Identities=19%  Similarity=0.234  Sum_probs=211.7

Q ss_pred             cCCCCChHHHHHHHhhhhhccCCCCCCCCCCCC-cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHH
Q 010008          100 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG-GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYT  177 (520)
Q Consensus       100 asen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~-g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~  177 (520)
                      ++..++|+.|++++...+.+.+  +.|+.+.+. +....+.++ .+++++++++|++++    +|..++|+ +++..++.
T Consensus         5 a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~r~~la~~~g~~~~----~v~~~~g~t~a~~~~l~   77 (353)
T TIGR03235         5 NATTPIDPAVAEAMLPWLLEEF--GNPSSRTHEFGHNAKKAVE-RARKQVAEALGADTE----EVIFTSGATESNNLAIL   77 (353)
T ss_pred             CCCCCCCHHHHHHHHHHHHhcC--CCCCchhhHHHHHHHHHHH-HHHHHHHHHhCCCCC----eEEEeCCHHHHHHHHHH
Confidence            3556889999999998886544  456543221 223333444 577899999999876    34456665 89988888


Q ss_pred             hhC----CCC-CEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 010008          178 AIL----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA  252 (520)
Q Consensus       178 all----~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~  252 (520)
                      ++.    ++| |.|++...+|.+......     .....|.  +++.++++ +++.+|++++++.+++ ++++|++.+++
T Consensus        78 ~l~~~~~~~g~~~vi~~~~~~~s~~~~~~-----~~~~~G~--~v~~v~~~-~~~~~d~~~l~~~l~~-~~~lv~~~~~~  148 (353)
T TIGR03235        78 GLARAGEQKGKKHIITSAIEHPAVLEPIR-----ALERNGF--TVTYLPVD-ESGRIDVDELADAIRP-DTLLVSIMHVN  148 (353)
T ss_pred             HHHHhcccCCCCeeeEcccccHHHHHHHH-----HHHhcCC--EEEEEccC-CCCcCCHHHHHHhCCC-CCEEEEEEccc
Confidence            875    366 788888777655432211     1122344  66666666 4578999999999987 89999998877


Q ss_pred             CCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHH
Q 010008          253 YPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES  329 (520)
Q Consensus       253 ~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~  329 (520)
                      |++  ..|+++|.++|+++|+++++|++|+.|.+..+....   ++|++++|+||++ ||.| |+++++++      ...
T Consensus       149 n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~~~~~---~~D~~~~s~~K~~-gp~g~g~l~~~~~------~~~  218 (353)
T TIGR03235       149 NETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVDLSAD---RIDLISCSGHKIY-GPKGIGALVIRKR------GKP  218 (353)
T ss_pred             CCceeccCHHHHHHHHHHcCCEEEEEchhhcCCcccccccc---CCCEEEeehhhcC-CCCceEEEEEccC------ccc
Confidence            775  789999999999999999999999988775443221   5899999999985 7887 99999874      211


Q ss_pred             --hhcccCCC------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEE
Q 010008          330 --AINNAVFP------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVD  401 (520)
Q Consensus       330 --~i~~~~~p------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd  401 (520)
                        .+....+.      ...|+++...++++..+++.+. .+.++..+++.++++.+.+.|.+.|++++.+.......++.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~  297 (353)
T TIGR03235       219 KAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIAR-RNAQAWEVKLRAMRNQLRDALQTLGVKLNGDPAETIPHILN  297 (353)
T ss_pred             ccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhccCCeEEeCCcccccCCEEE
Confidence              12211111      1257888899999999998765 45677788899999999999988999987542222222333


Q ss_pred             ecCCCCCHHHHHHHHhhcCeEEcCC
Q 010008          402 LRPMGIDGARVEKILDMASITLNKN  426 (520)
Q Consensus       402 ~~~~g~~~~~~~~~L~~~gI~v~~~  426 (520)
                      +...+++++++.+.|++ +|.+..+
T Consensus       298 ~~~~~~~~~~v~~~L~~-~i~v~~g  321 (353)
T TIGR03235       298 FSIDGVNSEALIVNLRA-DAAVSTG  321 (353)
T ss_pred             EEeCCcCHHHHHHHHhC-CeEEEch
Confidence            43446778889999975 8998654

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.93  E-value=1.5e-23  Score=219.98  Aligned_cols=331  Identities=15%  Similarity=0.159  Sum_probs=213.6

Q ss_pred             ccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCceeeecCChH
Q 010008           94 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGS  169 (520)
Q Consensus        94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~sGs  169 (520)
                      +.|+|..+..  +.|+.+++++...+.+....+|+.      .....++++...+++.+.+|.+  +++   +|.+++|+
T Consensus        36 ~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~~~~Y~~------~~G~~~lr~aia~~~~~~~~~~~~~~~---~i~vt~G~  106 (394)
T PRK05942         36 DLIDLGMGNPDGAAPQPVIEAAIAALADPQNHGYPP------FEGTASFRQAITDWYHRRYGVELDPDS---EALPLLGS  106 (394)
T ss_pred             CeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCccCCC------CCCCHHHHHHHHHHHHHHHCCCcCCCC---eEEEccCh
Confidence            4577765432  245667787766554322234443      1223356656667787777754  431   36668887


Q ss_pred             -HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEEE
Q 010008          170 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLII  247 (520)
Q Consensus       170 -~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklIi  247 (520)
                       +|+..++.++++|||+|++++|+|.++..        .+...|.  +++.++++.+ ++.+|++++++.+.+ ++|+|+
T Consensus       107 ~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~~~~-~~k~i~  175 (394)
T PRK05942        107 KEGLTHLALAYVNPGDVVLVPSPAYPAHFR--------GPLIAGA--QIYPIILKPENDWLIDLSSIPEEVAQ-QAKILY  175 (394)
T ss_pred             HHHHHHHHHHhCCCCCEEEEcCCCCcchHH--------HHHHcCC--EEEEeecCCccCCccCHHHHHHhccc-cceEEE
Confidence             89999999999999999999998876532        1233454  6667777644 357999999998876 899999


Q ss_pred             EcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCC---CC---cccEEEeccCccc--CCCCceE
Q 010008          248 AGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP---FK---YCDVVTTTTHKSL--RGPRGGM  314 (520)
Q Consensus       248 ~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p---~~---~aDiv~~S~hK~l--~GprgG~  314 (520)
                      +++|+||+  ..+   +++|.++|+++|+++|+|+++. .+.+.+....+   +.   ...+++.|++|.+  +|.|.||
T Consensus       176 l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~-~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~  254 (394)
T PRK05942        176 FNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYA-ELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGF  254 (394)
T ss_pred             EcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccch-hhccCCCCCCChhhCCCccccEEEEecchhccCChhhheee
Confidence            99899997  555   7788899999999999999953 44433221112   11   2347789999966  7888999


Q ss_pred             EEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCC
Q 010008          315 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD  394 (520)
Q Consensus       315 I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~  394 (520)
                      +++++      ++.+.+.........+.+...+. ++..+++.. ....++..+++.++++.+.+.|.+.|+.+..+ ..
T Consensus       255 i~~~~------~l~~~l~~~~~~~~~~~~~~~q~-~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~-~~  325 (394)
T PRK05942        255 VVGNR------HIIQGLRTLKTNLDYGIFSALQK-AAETALQLP-DSYLQQVQERYRTRRDFLIQGLGELGWNIPPT-KA  325 (394)
T ss_pred             eecCH------HHHHHHHHHHhhcccCCCHHHHH-HHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHCCCeecCC-Ce
Confidence            99987      67666654322111222223233 333445421 22335667777888888999998888877654 23


Q ss_pred             CeeEEEEecCCCCCHHH-HHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          395 NHLVLVDLRPMGIDGAR-VEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       395 ~~~~~vd~~~~g~~~~~-~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      +.++|+++. .+++..+ +.+.|+++||.+.    ||+. +...++++||+..         .+.+.+.+.++++.
T Consensus       326 ~~f~~~~~~-~~~~~~~~~~~~l~~~gV~v~----~g~~f~~~~~~~iRis~~---------~~~~~l~~~l~~l~  387 (394)
T PRK05942        326 TMYLWVPCP-VGMGSTDFALNVLQKTGVVVT----PGNAFGEGGEGYVRISLI---------ADCDRLGEALDRLK  387 (394)
T ss_pred             eeEEEEECC-CCCCHHHHHHHHHHHCCEEEe----CChhhCcCCCCeEEEEec---------CCHHHHHHHHHHHH
Confidence            456777774 3455555 4456788999994    4443 2223579999874         13455555555443

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.93  E-value=1.3e-23  Score=220.29  Aligned_cols=335  Identities=19%  Similarity=0.202  Sum_probs=220.6

Q ss_pred             ccceEecCC--CC-ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHH
Q 010008           94 KSLELIASE--NF-TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP  170 (520)
Q Consensus        94 ~~i~Liase--n~-~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~  170 (520)
                      +.|+|..++  .+ +++.+++++...+.. +..++++.++..|..   .+.+..++++++++|.+.     +|.+++|++
T Consensus        43 ~~i~l~~~~~~~~~~~~~i~~a~~~~~~~-~~~~~~~~~~~~G~~---~l~~~l~~~la~~~g~~~-----~i~~tsG~~  113 (397)
T PRK06939         43 EVINFCANNYLGLANHPELIAAAKAALDS-HGFGMASVRFICGTQ---DLHKELEEKLAKFLGTED-----AILYSSCFD  113 (397)
T ss_pred             eEEEeeccCccccCCCHHHHHHHHHHHHH-cCCCCcccccccCCc---HHHHHHHHHHHHHhCCCc-----EEEEcChHH
Confidence            457776554  22 688899998887754 333555555555542   223344478889999762     566799999


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh---c--CCcE
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---F--RPKL  245 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~---~--~pkl  245 (520)
                      ++..++.++++|||+|++.+|.|.++..        .+...+.  +++.++      .+|++++++.+++   .  ++++
T Consensus       114 a~~~~~~~l~~~gd~vi~~~~~~~~~~~--------~~~~~~~--~~~~~~------~~d~~~l~~~i~~~~~~~~~~~~  177 (397)
T PRK06939        114 ANGGLFETLLGKEDAIISDALNHASIID--------GVRLCKA--KRYRYA------NNDMADLEAQLKEAKEAGARHKL  177 (397)
T ss_pred             HHHHHHHHhCCCCCEEEEEhhhhHHHHH--------HHHhcCC--ceEEeC------CCCHHHHHHHHHhhhccCCCCeE
Confidence            9999999999999999999987765421        2233343  333432      2588999888764   2  5777


Q ss_pred             EEEcCCCCC--CCCCHHHHHHHHHHhCCEEEEechhhcccccc-cc--cC--CCCCcccEEEeccCcccCCCCceEEEee
Q 010008          246 IIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAA-SV--VA--DPFKYCDVVTTTTHKSLRGPRGGMIFFK  318 (520)
Q Consensus       246 Ii~~~s~~p--~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~-~~--~~--~p~~~aDiv~~S~hK~l~GprgG~I~~~  318 (520)
                      |+.+...++  ...++++|.++|+++|++||+|++|..|.... +.  .+  ...+..|++++|+||++.|+|+||++++
T Consensus       178 v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r~G~v~~~  257 (397)
T PRK06939        178 IATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGASGGYTAGR  257 (397)
T ss_pred             EEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccCceEEEeC
Confidence            877643333  36799999999999999999999986664322 11  00  1112468999999999988999999998


Q ss_pred             CCCcchhhHHHhhcccCCCCC-CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCee
Q 010008          319 KDPVLGVELESAINNAVFPGL-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL  397 (520)
Q Consensus       319 ~~~~~~~~l~~~i~~~~~p~~-~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~  397 (520)
                      +      ++.+.+.....+.. .+++....++++..+++.+.  ..++..+++.++++.+.+.|.+.|+++..+  ...+
T Consensus       258 ~------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~  327 (397)
T PRK06939        258 K------EVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLE--ESDELRDRLWENARYFREGMTAAGFTLGPG--EHPI  327 (397)
T ss_pred             H------HHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHcCCCcCCC--CCCE
Confidence            7      66666654322222 23333334444445566543  235677888899999999998888776543  2233


Q ss_pred             EEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          398 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       398 ~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +.+.+. .+.+..++.+.|.+.||.+.....|..  +....+||++.+..    .+++|+++.++.|.++++.
T Consensus       328 ~~~~~~-~~~~~~~~~~~L~~~gI~v~~~~~~~~--~~~~~~iRi~~~~~----~~~~~i~~~l~~L~~~~~~  393 (397)
T PRK06939        328 IPVMLG-DAKLAQEFADRLLEEGVYVIGFSFPVV--PKGQARIRTQMSAA----HTKEQLDRAIDAFEKVGKE  393 (397)
T ss_pred             EEEEEC-CHHHHHHHHHHHHHCCceEeeeCCCCC--CCCCceEEEEECCC----CCHHHHHHHHHHHHHHHHH
Confidence            333332 223456677777777999864322211  12246899987654    3489999999999887753

>PRK07179 hypothetical protein; Provisional

Probab=99.93  E-value=1.3e-23  Score=221.35  Aligned_cols=325  Identities=18%  Similarity=0.242  Sum_probs=223.6

Q ss_pred             CCCCC----hHHHHHHHhhhhhccCCCCCC-CCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHH
Q 010008          101 SENFT----SRAVMEAVGSCLTNKYSEGLP-GKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV  175 (520)
Q Consensus       101 sen~~----~~~V~ea~~s~l~~~y~~G~p-~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~  175 (520)
                      |.+|.    .|.|++++...+...+ .+.. +..|..|.+...++|    +++++++|.+.     .+..+||++||.++
T Consensus        61 ~~~YL~l~~~p~v~~a~~~~~~~~~-~~~~~s~~~~~~~~~~~~le----~~la~~~g~~~-----~~~~~sG~~An~~~  130 (407)
T PRK07179         61 SNDYLNLSGHPDIIKAQIAALQEEG-DSLVMSAVFLHDDSPKPQFE----KKLAAFTGFES-----CLLCQSGWAANVGL  130 (407)
T ss_pred             cCCccCCCCCHHHHHHHHHHHHHhC-CCCCccccccCCchHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHH
Confidence            55553    5899999988875432 1111 334566656666777    67889999875     25578899999999


Q ss_pred             HHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC
Q 010008          176 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR  255 (520)
Q Consensus       176 l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~  255 (520)
                      +.++.++||.|++..+.|.+...        .+...|.  ++++++      ..|++++++++++.++++|++.++++++
T Consensus       131 l~~l~~~g~~v~~~~~~h~s~~~--------~~~~~g~--~~~~~~------~~d~~~l~~~l~~~~~~lV~v~~v~n~t  194 (407)
T PRK07179        131 LQTIADPNTPVYIDFFAHMSLWE--------GVRAAGA--QAHPFR------HNDVDHLRRQIERHGPGIIVVDSVYSTT  194 (407)
T ss_pred             HHHhCCCCCEEEEECCcCHHHHH--------HHHHCCC--eEEEec------CCCHHHHHHHHHhcCCeEEEECCCCCCC
Confidence            99999999999987665533321        1222343  444432      3699999999976458888888777665


Q ss_pred             --CCCHHHHHHHHHHhCCEEEEechhhcccccc-c--cc-CCCC-CcccEEEeccCcccCCCCceEEEeeCCCcchhhHH
Q 010008          256 --DFDYPRMRQIADAVGALLMMDMAHISGLVAA-S--VV-ADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELE  328 (520)
Q Consensus       256 --~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~-~--~~-~~p~-~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~  328 (520)
                        ..|+++|+++|+++|++|++|++|..|.... +  .. ..++ +.+|++++|+||+++ +++|++++++      ++.
T Consensus       195 G~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g-~~~G~l~~~~------~~~  267 (407)
T PRK07179        195 GTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFA-GRAGIITCPR------ELA  267 (407)
T ss_pred             CccccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhh-ccCeEEEeCH------HHH
Confidence              8899999999999999999999997664321 1  00 1111 146999999999985 5799999987      565


Q ss_pred             HhhcccCCCCC-CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCC
Q 010008          329 SAINNAVFPGL-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGI  407 (520)
Q Consensus       329 ~~i~~~~~p~~-~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~  407 (520)
                      +.+.....+.. .+++....++++..+++....  ..+..+++.++++++.+.|.+.|+++.+.   .+++.+.+.. ..
T Consensus       268 ~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~~~--~~~~~~~l~~~~~~l~~~L~~~g~~v~~~---~~i~~l~~~~-~~  341 (407)
T PRK07179        268 EYVPFVSYPAIFSSTLLPHEIAGLEATLEVIES--ADDRRARLHANARFLREGLSELGYNIRSE---SQIIALETGS-ER  341 (407)
T ss_pred             HHHHHhCcCeeeCCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCEEEEEeCC-HH
Confidence            55543333332 345556677776667776532  24567889999999999999888876632   3555554421 12


Q ss_pred             CHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          408 DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       408 ~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +...+.+.|.+.||.++.-..|+.  +..++.+||+++..+    +++|++++++.|.+++..
T Consensus       342 ~~~~~~~~L~~~GI~~~~~~~p~~--~~~~~~lRis~~~~~----t~edi~~~~~~l~~~~~~  398 (407)
T PRK07179        342 NTEVLRDALEERNVFGAVFCAPAT--PKNRNLIRLSLNADL----TASDLDRVLEVCREARDE  398 (407)
T ss_pred             HHHHHHHHHHHCCceEeeecCCCC--CCCCceEEEEECCCC----CHHHHHHHHHHHHHHHHh
Confidence            346677888899998653223332  223578999987654    589999999999988764

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.93  E-value=1.5e-23  Score=218.19  Aligned_cols=330  Identities=16%  Similarity=0.146  Sum_probs=213.5

Q ss_pred             ccceEec--CCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcch---hHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh
Q 010008           94 KSLELIA--SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNE---YIDELETLCQKRALAAFNLDENKWGVNVQPLSG  168 (520)
Q Consensus        94 ~~i~Lia--sen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~---~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG  168 (520)
                      ..|+|.+  .-+.+..++.+++..+     ..|+.+.|+-+|..   +.+.++ ..++.+++++|++..    .| ..+|
T Consensus         7 ~~~~~~~~~~~g~~~~~~~~a~~~~-----~~~~~~~~~~~g~~~~~~~~~~~-~~~e~lA~~~g~~~~----~i-~~g~   75 (370)
T TIGR02539         7 GSINLNPLQRGGVLTEAARKALVEF-----GDGYSVCDFCGGRLDQITKPPIH-DFLEDLAEFLGMDEA----RV-THGA   75 (370)
T ss_pred             cccccChhhhCCCCcHHHHHHHHHH-----hhccccccccccccccccchHHH-HHHHHHHHHhCCCce----EE-ECCh
Confidence            4567665  3345677777777543     34566666544432   011222 123568999999862    33 3566


Q ss_pred             HHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC-CCCCCCHHHHHHHhhh------c
Q 010008          169 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAIL------F  241 (520)
Q Consensus       169 s~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-~~~~iD~d~le~~i~~------~  241 (520)
                      ++++.+++.++++|||.|++..++|.+.+.        .+...|.  +++.++.+. .++.+|++++++.+++      .
T Consensus        76 ~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~  145 (370)
T TIGR02539        76 REGKFAVMHALCKEGDWVVLDGLAHYTSYV--------AAERAGL--NVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGK  145 (370)
T ss_pred             HHHHHHHHHHhhCCCCEEEECCcccHHHHH--------HHHHcCC--EEEEEecCCcccCCcCHHHHHHHHHHhhhccCC
Confidence            699999999999999999998877644321        2344565  555555543 2578999999999864      2


Q ss_pred             CCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCC-CCceEEEee
Q 010008          242 RPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRG-PRGGMIFFK  318 (520)
Q Consensus       242 ~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~G-prgG~I~~~  318 (520)
                      ++++|+++++++++  ..|+++|.++|+++|+++++|+||..|........   .+.|+++.|+||++++ .+.|+++++
T Consensus       146 ~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~---~~~di~v~s~sK~~~~~g~~G~l~~~  222 (370)
T TIGR02539       146 PPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKE---IGADFIVGSGHKSMAASGPCGVLGMS  222 (370)
T ss_pred             CcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHH---cCCCEEEeeCcccccCCCCEEEEEEC
Confidence            67899988777665  78999999999999999999999987743211110   1579999999999853 445999998


Q ss_pred             CCCcchhhHHHhhcccCCCCC-------CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEec-
Q 010008          319 KDPVLGVELESAINNAVFPGL-------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVS-  390 (520)
Q Consensus       319 ~~~~~~~~l~~~i~~~~~p~~-------~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~-  390 (520)
                      +      ++.+.+.....|..       .++......++...++.... ...+. ..+..++++++.+.|.+.|++++. 
T Consensus       223 ~------~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-~~l~~-~~~~~~~~~~l~~~L~~~g~~~~~~  294 (370)
T TIGR02539       223 E------EWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHVV-ERVKR-WDEEVKKTRWFVAELEDIGFIQLGQ  294 (370)
T ss_pred             H------HHHhhhcccccCCccceeeeecccccccHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHhCCcEEEcc
Confidence            7      56666554332211       12222122333333454321 12222 334455567899999999998753 


Q ss_pred             CCCCCeeEEEEecCC-------CCCHHHHHHHHhhcCeE-EcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHH
Q 010008          391 GGSDNHLVLVDLRPM-------GIDGARVEKILDMASIT-LNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIAD  462 (520)
Q Consensus       391 ~gt~~~~~~vd~~~~-------g~~~~~~~~~L~~~gI~-v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~  462 (520)
                      ....++++++++...       ..++..+.+.|.+.||. +.    |+     .++.||+++.     +.+++|++++++
T Consensus       295 ~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir----~~-----~~~~iRis~~-----~~t~e~i~~l~~  360 (370)
T TIGR02539       295 KPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIR----SG-----QTKYFKLSVY-----GLTKEQVEYVVD  360 (370)
T ss_pred             CCCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCcccc----CC-----cceEEEEEec-----CCCHHHHHHHHH
Confidence            123466777765321       11234688889999997 42    22     2458999862     246899999999


Q ss_pred             HHHHHHH
Q 010008          463 FIHEGVE  469 (520)
Q Consensus       463 ~i~~~l~  469 (520)
                      .|+++++
T Consensus       361 ~L~~~~~  367 (370)
T TIGR02539       361 SFEEIVE  367 (370)
T ss_pred             HHHHHHH
Confidence            9988764

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK09082 methionine aminotransferase; Validated

Probab=99.93  E-value=6.8e-24  Score=222.02  Aligned_cols=358  Identities=13%  Similarity=0.112  Sum_probs=231.3

Q ss_pred             hhccccChHHHHHHHHHHHHhhccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHH
Q 010008           72 YSLGEADPEVCEIITKEKERQFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL  149 (520)
Q Consensus        72 ~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~  149 (520)
                      +++....+.++..+....+ ....|+|..+++.  .++.+.+++...+...+ .+|+.      ......+++...+++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~-~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-~~Y~~------~~G~~~lr~~~a~~l~   81 (386)
T PRK09082         10 SKLPNVGTTIFTVMSALAA-EHGAINLSQGFPDFDGPPYLVEALAYAMAAGH-NQYPP------MTGVAALREAIAAKTA   81 (386)
T ss_pred             hHhhccCccHHHHHHHHHh-hCCEEEecCCCCCCCCCHHHHHHHHHHHHcCC-CCCCC------CCCcHHHHHHHHHHHH
Confidence            3344444445544433222 2355888776643  46888998887765432 23432      1123455556667888


Q ss_pred             HHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCC
Q 010008          150 AAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL  228 (520)
Q Consensus       150 ~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~  228 (520)
                      +.+|.+.+.- .+|.+++|+ +|+..++.++++|||+|++.+|.|.++..        .+...|.  +++.++++.+++.
T Consensus        82 ~~~~~~~~~~-~~i~~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~  150 (386)
T PRK09082         82 RLYGRQYDAD-SEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAP--------AIELAGG--RAVRVALQPPDFR  150 (386)
T ss_pred             HHhCCCCCCC-CcEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhHH--------HHHHcCC--EEEEEecCccccc
Confidence            8889864210 146667776 89999999999999999999998765421        2334454  6777777655688


Q ss_pred             CCHHHHHHHhhhcCCcEEEEcCCCCCC--C---CCHHHHHHHHHHhCCEEEEechhhcccccccc-cCCCC--C---ccc
Q 010008          229 VDYDMLEKTAILFRPKLIIAGASAYPR--D---FDYPRMRQIADAVGALLMMDMAHISGLVAASV-VADPF--K---YCD  297 (520)
Q Consensus       229 iD~d~le~~i~~~~pklIi~~~s~~p~--~---~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~~p~--~---~aD  297 (520)
                      +|++++++.+++ ++|+|+++.++||+  .   .++++|.++|+++|+++|+|+++ ..+.+.+. .++..  .   ...
T Consensus       151 ~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y-~~~~~~~~~~~s~~~~~~~~~~~  228 (386)
T PRK09082        151 VDWQRFAAAISP-RTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVY-EHIVFDGAGHASVLRHPELRERA  228 (386)
T ss_pred             CCHHHHHHhcCc-cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhh-hhhccCCCCCCChhhCcCccCcE
Confidence            999999999987 89999998888886  2   46888999999999999999995 44444332 22211  1   234


Q ss_pred             EEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q 010008          298 VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCR  375 (520)
Q Consensus       298 iv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~  375 (520)
                      +++.|++|++  +|.|.||+++++      ++.+.+.........+.+...+.+ ++..+.. .....++..+.+.++++
T Consensus       229 i~~~S~SK~~~~~G~RiG~iv~~~------~l~~~~~~~~~~~~~~~~~~~q~~-~~~~l~~-~~~~~~~~~~~~~~~~~  300 (386)
T PRK09082        229 FVVSSFGKTYHVTGWKVGYCVAPA------ALSAEFRKVHQYNTFTVNTPAQLA-LADYLRA-EPEHYLELPAFYQAKRD  300 (386)
T ss_pred             EEEeechhhccchhhhhhhhhCCH------HHHHHHHHHHhhhcCCCChHHHHH-HHHHHhC-ChHHHHHHHHHHHHHHH
Confidence            7889999987  789999999987      666655443211112222333332 3333432 12334666777888999


Q ss_pred             HHHHHHHHCCCEEecCCCCCeeEEEEecC-CCCCHHHHHHH-HhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCC
Q 010008          376 ALASRLVELGYKLVSGGSDNHLVLVDLRP-MGIDGARVEKI-LDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFS  453 (520)
Q Consensus       376 ~l~~~L~~~G~~v~~~gt~~~~~~vd~~~-~g~~~~~~~~~-L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~  453 (520)
                      .+.+.|.+.|+.+..+ ..+.++|++++. .+++..++.+. ++++||.+..+...+. .+...+++||+..      ..
T Consensus       301 ~~~~~L~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~-~~~~~~~~Ri~~~------~~  372 (386)
T PRK09082        301 RFRAALANSRFKLLPC-EGTYFQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYA-DPFPHRLVRLCFA------KQ  372 (386)
T ss_pred             HHHHHHHhCCCcccCC-CeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCC-CCCCCCEEEEEec------CC
Confidence            9999998888876543 235667778753 24566666665 5789999954321111 1223578999864      23


Q ss_pred             HHHHHHHHHHHHH
Q 010008          454 EKEFVAIADFIHE  466 (520)
Q Consensus       454 ~~d~~~la~~i~~  466 (520)
                      ++++++..+.|.+
T Consensus       373 ~~~l~~~~~rl~~  385 (386)
T PRK09082        373 EETLDAAAERLCQ  385 (386)
T ss_pred             HHHHHHHHHHHhh
Confidence            6777777666643

>PRK08068 transaminase; Reviewed

Probab=99.93  E-value=2.3e-23  Score=218.28  Aligned_cols=331  Identities=16%  Similarity=0.127  Sum_probs=215.3

Q ss_pred             ccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceeeecCChH
Q 010008           94 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSGS  169 (520)
Q Consensus        94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V~~~sGs  169 (520)
                      +.|+|..++.  ..++.+.+++...+......+|+.   ..|   .+++++...+++.+.+|.  ++++   +|.+++|+
T Consensus        33 ~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~g---~~~lr~aia~~~~~~~g~~~~~~~---~i~it~G~  103 (389)
T PRK08068         33 DVINLGQGNPDQPTPEHIVEALQEAAENPANHKYSP---FRG---YPFLKEAAADFYKREYGVTLDPET---EVAILFGG  103 (389)
T ss_pred             CeEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC---CCC---CHHHHHHHHHHHHHHhCCCCCCCc---cEEEcCCc
Confidence            4588876653  245778888887665432223432   112   345665666777776775  4431   35567877


Q ss_pred             -HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEEE
Q 010008          170 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLII  247 (520)
Q Consensus       170 -~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklIi  247 (520)
                       +++..++.++++|||+|++++|+|+.+..        .+...|.  +++.++++++ ++.+|++++++.+.+ ++|+|+
T Consensus       104 ~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~--------~~~~~g~--~~~~i~~~~~~~~~~d~~~l~~~~~~-~~~~v~  172 (389)
T PRK08068        104 KAGLVELPQCLMNPGDTILVPDPGYPDYLS--------GVALARA--QFETMPLIAENNFLPDYTKIPEEVAE-KAKLMY  172 (389)
T ss_pred             HHHHHHHHHHhCCCCCEEEEcCCCCcchHH--------HHHhcCC--EEEEeecccccCCCCCHHHHHHhccc-cceEEE
Confidence             88888899999999999999998865432        2334565  6666777654 467899999998876 899999


Q ss_pred             EcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCC-CC-----cccEEEeccCccc--CCCCceE
Q 010008          248 AGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP-FK-----YCDVVTTTTHKSL--RGPRGGM  314 (520)
Q Consensus       248 ~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p-~~-----~aDiv~~S~hK~l--~GprgG~  314 (520)
                      ++.|+||+  .++   +++|.++|+++|+++|+|+++ ..+.+.+..+.+ +.     ...+++.|++|++  +|.|.||
T Consensus       173 l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay-~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~  251 (389)
T PRK08068        173 LNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAY-GAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAF  251 (389)
T ss_pred             EECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhh-hhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEe
Confidence            99899997  555   467778899999999999994 344433311111 11     1237889999987  7889999


Q ss_pred             EEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCC
Q 010008          315 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD  394 (520)
Q Consensus       315 I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~  394 (520)
                      ++.++      ++.+.+.....+...+.+...+.++. .++... ....+...+++.++++.+.+.|.+.|+.+..+ ..
T Consensus       252 ~~~~~------~l~~~l~~~~~~~~~~~~~~~q~~~~-~~l~~~-~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~~~-~g  322 (389)
T PRK08068        252 AVGNE------SVIEAINLLQDHLFVSLFGAIQDAAI-EALLSD-QSCVAELVARYESRRNAFISACREIGWEVDAP-KG  322 (389)
T ss_pred             EecCH------HHHHHHHHHHhhccCCCChHHHHHHH-HHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC-Ce
Confidence            99877      67776654433322333333333332 233221 12346778888888999999998888876543 23


Q ss_pred             CeeEEEEecCCCCCHHHHHHHHh-hcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHH
Q 010008          395 NHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  465 (520)
Q Consensus       395 ~~~~~vd~~~~g~~~~~~~~~L~-~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~  465 (520)
                      +.++|+++.. +++..++.+.|. ++||.+.    ||.. +...++++||+..      ..++.+++..+.|.
T Consensus       323 ~~~~~v~~~~-~~~~~~~~~~l~~~~gi~v~----pg~~f~~~~~~~iRi~~~------~~~~~l~~al~~l~  384 (389)
T PRK08068        323 SFFAWMPVPK-GYTSEQFADLLLEKAHVAVA----PGNGFGEHGEGYVRVGLL------TDEERLREAVERIG  384 (389)
T ss_pred             eEEEEEECCC-CCCHHHHHHHHHHhCCEEEe----cchHhCccCCCeEEEEEc------CCHHHHHHHHHHHH
Confidence            4566777743 456677777665 5899995    4432 2223579999874      12455555554443

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.93  E-value=3.9e-23  Score=216.19  Aligned_cols=331  Identities=16%  Similarity=0.151  Sum_probs=214.6

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCceeeecCChH
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGS  169 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~sGs  169 (520)
                      +.++|..+++.  +++.+.+++...+.......|+.   ..|   .+++.+...+++.+.+|.+  +++   +|.+|+|+
T Consensus        32 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G---~~~lr~aia~~~~~~~g~~~~~~~---~ii~t~G~  102 (385)
T PRK09276         32 DVISLGIGDPDLPTPDHIIEAMCKAVEDPENHQYPS---YEG---MLEFRKAVADWYKRRFGVELDPET---EVISLIGS  102 (385)
T ss_pred             CEEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC---CCC---cHHHHHHHHHHHHHHhCCCCCCCC---cEEEccCc
Confidence            55888877763  57788999887765321223432   112   3455555667777777764  331   36668888


Q ss_pred             -HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEEE
Q 010008          170 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLII  247 (520)
Q Consensus       170 -~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklIi  247 (520)
                       +++..++.++++|||+|++++|.|..+..        .....|.  +++.++++.+ .+.+|++++++.+.. ++|+|+
T Consensus       103 ~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~--------~~~~~g~--~~~~v~~~~~~g~~~d~~~l~~~~~~-~~~~v~  171 (385)
T PRK09276        103 KEGIAHIPLAFVNPGDVVLVPDPGYPVYKI--------GTIFAGG--EPYFMPLKEENGFLPDLDAIPEDVAK-KAKLMF  171 (385)
T ss_pred             HHHHHHHHHHhCCCCCEEEEcCCCCcChHH--------HHHHcCC--EEEEEecCCCCCCcCCHHHHHHhccc-cceEEE
Confidence             89999999999999999999998754321        2234455  6666667644 356899999988876 899999


Q ss_pred             EcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCC---CC---cccEEEeccCccc--CCCCceE
Q 010008          248 AGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP---FK---YCDVVTTTTHKSL--RGPRGGM  314 (520)
Q Consensus       248 ~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p---~~---~aDiv~~S~hK~l--~GprgG~  314 (520)
                      +++|+||+  ..+   +++|.++|+++|+++|+|+++. .+.+.+....+   +.   ...+++.|++|.+  +|.|.||
T Consensus       172 l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~  250 (385)
T PRK09276        172 INYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYS-EIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGF  250 (385)
T ss_pred             EeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchh-heecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhhee
Confidence            99899997  555   5788888999999999999954 44433211111   11   1237789999986  7889999


Q ss_pred             EEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCC
Q 010008          315 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD  394 (520)
Q Consensus       315 I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~  394 (520)
                      +++++      ++.+.+.........+.+.. ...+...++... ....++..+++.++++.+.+.|++.|+.+..+ ..
T Consensus       251 ~i~~~------~l~~~~~~~~~~~~~~~~~~-~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~  321 (385)
T PRK09276        251 AVGNA------DLIAGLGKVKSNVDSGVFQA-IQEAGIAALNGP-QEVVEELRKIYQERRDILVEGLRKLGLEVEPP-KA  321 (385)
T ss_pred             eeCCH------HHHHHHHHHHhhccCCCCHH-HHHHHHHHHcCc-HHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-Cc
Confidence            99887      56665544222111222222 222223334321 12336667778888899999998888876554 23


Q ss_pred             CeeEEEEecCCCCCHHHHHHH-HhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHH
Q 010008          395 NHLVLVDLRPMGIDGARVEKI-LDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  465 (520)
Q Consensus       395 ~~~~~vd~~~~g~~~~~~~~~-L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~  465 (520)
                      +.++|+++. .+++..++.+. ++++||.+.    ||.. ....++++||++.      ..++++.+..+.|.
T Consensus       322 ~~~~~v~~~-~~~~~~~l~~~ll~~~gi~v~----~g~~f~~~~~~~~Ris~~------~~~~~l~~~l~~l~  383 (385)
T PRK09276        322 TFYVWAPVP-KGYTSAEFATLLLDKAGVVVT----PGNGFGEYGEGYFRIALT------VPDERIEEAVERIK  383 (385)
T ss_pred             ceEEEEECC-CCCCHHHHHHHHHHhCCEEEC----CchhhCCCCCCeEEEEeC------CCHHHHHHHHHHHh
Confidence            566788774 34566666555 567899994    4433 2223578999864      23566655555543

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.93  E-value=2.9e-23  Score=214.13  Aligned_cols=326  Identities=16%  Similarity=0.141  Sum_probs=219.4

Q ss_pred             EecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHH
Q 010008           98 LIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT  177 (520)
Q Consensus        98 Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~  177 (520)
                      +.++...+++.|++++...+. .+.           ..+.+.++ ..++.+++++|++++... .+.+.+|++++..++.
T Consensus         3 ~~p~p~~~~~~~~~~~~~~~~-~~~-----------~~~~~~~~-~~~~~la~~~~~~~~~~~-i~~~~~gt~~l~~~~~   68 (355)
T TIGR03301         3 LTPGPLSTSATVRDAMLVDWC-HWD-----------SEFNDVTD-QVRDRLLALAGGDDNHTC-VLLQGSGTFAVEATIG   68 (355)
T ss_pred             CcCCCCCCCHHHHHHhhhhcc-CCC-----------HHHHHHHH-HHHHHHHHHhcCCCCCcE-EEEeCCcHHHHHHHHH
Confidence            456677789999999987332 111           12233333 456899999999864321 1235678899999999


Q ss_pred             hhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc-CCcEEEEcCCCCCC-
Q 010008          178 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-RPKLIIAGASAYPR-  255 (520)
Q Consensus       178 all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~-~pklIi~~~s~~p~-  255 (520)
                      +++++||+|++.++.+-+..   +.   ......|.  +++.++++ +++.+|++++++.+++. +++++++.++++++ 
T Consensus        69 ~~~~~~~~vi~~~~~~~~~~---~~---~~a~~~g~--~~~~i~~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G  139 (355)
T TIGR03301        69 SLVPRDGKLLVLINGAYGER---LA---KICEYLGI--PHTDLNFS-EYEPPDLNRIEEALAADPDITHVATVHHETTTG  139 (355)
T ss_pred             hccCCCCeEEEECCCchhhH---HH---HHHHHcCC--ceEEEecC-CCCCCCHHHHHHHHHhCCCceEEEEEecCCccc
Confidence            99999999887665432210   00   01223344  45555554 35789999999998762 34556655555543 


Q ss_pred             -CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhh
Q 010008          256 -DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI  331 (520)
Q Consensus       256 -~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i  331 (520)
                       ..|+++|.++|+++|+++++|++|+.|...     .++.  ++|++++|+|||+.|+.| |++++++      ++.+.+
T Consensus       140 ~~~~~~~i~~l~~~~~~~livD~~~s~g~~~-----~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~------~~~~~~  208 (355)
T TIGR03301       140 ILNPLEAIAKVARSHGAVLIVDAMSSFGAIP-----IDIEELDVDALIASANKCLEGVPGFGFVIARR------DLLEAS  208 (355)
T ss_pred             chhHHHHHHHHHHHcCCEEEEEeccccCCcc-----cchhhcCccEEEecCCcccccCCceeEEEECH------HHHHHh
Confidence             789999999999999999999988766432     1222  589999999999977776 9999987      444443


Q ss_pred             cccCC----------------CCCCCCChHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHHHHHCCCEEecCC-C
Q 010008          332 NNAVF----------------PGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASRLVELGYKLVSGG-S  393 (520)
Q Consensus       332 ~~~~~----------------p~~~g~p~~~~iaala~al~~~~~~~-~~~~~~~i~~na~~l~~~L~~~G~~v~~~g-t  393 (520)
                      .....                .....+++...+.++..+++.+...+ +++..+++.++++.+.+.|.+.|++++.+. .
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~  288 (355)
T TIGR03301       209 AGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRALGFQPLLPERW  288 (355)
T ss_pred             hCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCC
Confidence            31100                01123566777777777888765554 677888889999999999988898866432 2


Q ss_pred             CCe-eEEEEecCC-CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          394 DNH-LVLVDLRPM-GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       394 ~~~-~~~vd~~~~-g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      .+. ++++.+... ..+.+++.+.|.+.||.+..    +..  ...++|||++...+    +++|++++++.|+++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~----~~~--~~~~~iRis~~~~~----~~~~i~~~~~~l~~~  354 (355)
T TIGR03301       289 QSPIIVSFLYPDDPDFDFDDFYQELKERGFVIYP----GKL--TLADTFRIGTIGEI----DAADIERLLEAIKDA  354 (355)
T ss_pred             CCCcEEEEECCCCCcchHHHHHHHHHHCCEEEEC----Ccc--ccccEEEEecCCCC----CHHHHHHHHHHHHhh
Confidence            233 334554321 24556788999999999954    321  11368999975443    489999999999865

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.93  E-value=3.6e-23  Score=214.98  Aligned_cols=346  Identities=18%  Similarity=0.165  Sum_probs=227.2

Q ss_pred             ChHHHHHHHHHHHHhh--ccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC
Q 010008           78 DPEVCEIITKEKERQF--KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD  155 (520)
Q Consensus        78 d~~~~~~~~~e~~~~~--~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~  155 (520)
                      +.++++.+++-.+...  ..| |.....+..|.+.+++...+...+  |.+.  .+.+.   ..+++.+++++++++|++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~--~~~~--~~~~~---~~~~~~~~~~la~~~g~~   75 (371)
T PRK13520          4 EEEILEELEEYRSEDLKYERI-LSSMCTEPHPIARKAHEMFLETNL--GDPG--LFPGT---AKLEEEAVEMLGELLHLP   75 (371)
T ss_pred             HHHHHHHHHHHHhcCCCHHHe-eeeeecCchHHHHHHHHHHHhcCC--CCcc--cCccH---HHHHHHHHHHHHHHhCCC
Confidence            3456665544433321  223 444455677888999987776432  3332  23332   344456778999999987


Q ss_pred             CCCCceeeecCChHHHHHHHHHhhCC----CCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCH
Q 010008          156 ENKWGVNVQPLSGSPANFEVYTAILK----PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY  231 (520)
Q Consensus       156 ~~~~~~~V~~~sGs~A~~~~l~all~----pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~  231 (520)
                      .+.   .+...+|++||..++.++.+    +||+|++.++.|.++   .     +.....|.  +++.++.+ +++.+|+
T Consensus        76 ~~~---~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~---~-----~~~~~~g~--~~~~v~~~-~~~~~d~  141 (371)
T PRK13520         76 DAY---GYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSF---D-----KAADMLGV--ELRRAPLD-DDYRVDV  141 (371)
T ss_pred             CCC---eEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHHH---H-----HHHHHcCc--eEEEecCC-CCCcCCH
Confidence            642   23345566999988876643    689999988755332   1     12234455  44455555 4578999


Q ss_pred             HHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHhCCEEEEechhhcccccccccCC--C--CCcccEEEeccCc
Q 010008          232 DMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--P--FKYCDVVTTTTHK  305 (520)
Q Consensus       232 d~le~~i~~~~pklIi~~~s~~p--~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~--p--~~~aDiv~~S~hK  305 (520)
                      ++|++++++ ++++|++..++++  ...|+++|.++|+++|+++++|++|..+.........  .  ..++|.+++|+||
T Consensus       142 ~~l~~~i~~-~~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K  220 (371)
T PRK13520        142 KAVEDLIDD-NTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHK  220 (371)
T ss_pred             HHHHHHHhh-CCEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCcc
Confidence            999999987 6776665544443  3889999999999999999999998755432211111  1  1268999999999


Q ss_pred             ccCCC-CceEEEeeCCCcchhhHHHhhcccCCCCC--------CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q 010008          306 SLRGP-RGGMIFFKKDPVLGVELESAINNAVFPGL--------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA  376 (520)
Q Consensus       306 ~l~Gp-rgG~I~~~~~~~~~~~l~~~i~~~~~p~~--------~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~  376 (520)
                      |+.+| ++|++++.++     ++.+.+... .|..        .|+++...++++..+++.+...+++++.++..+++++
T Consensus       221 ~~~a~~~~G~~~~~~~-----~~~~~l~~~-~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~  294 (371)
T PRK13520        221 MGLAPIPAGGILFRDE-----SYLDALAVD-TPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRW  294 (371)
T ss_pred             ccCccCCceEEEEcCH-----HHHHhhccc-CccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHH
Confidence            87543 4566666553     455544311 1211        2334444566666778776656778889999999999


Q ss_pred             HHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHH
Q 010008          377 LASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKE  456 (520)
Q Consensus       377 l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d  456 (520)
                      +.+.|.+.|++++... ..+++.+++.    +.+++.+.|.+.||.+....        .++++|++++..+    +++|
T Consensus       295 l~~~L~~~g~~~~~~~-~~~~v~~~~~----~~~~v~~~L~~~gi~v~~~~--------~~~~iRis~~~~~----t~ed  357 (371)
T PRK13520        295 LAEELKERGFEPVIEP-VLNIVAFDDP----NPDEVREKLRERGWRVSVTR--------CPEALRIVCMPHV----TREH  357 (371)
T ss_pred             HHHHHHhCCCEEecCC-CceEEEEecC----CHHHHHHHHHHCCceeccCC--------CCCEEEEEEECCC----CHHH
Confidence            9999998899843322 2445555553    46788888988899985421        2468999977654    4899


Q ss_pred             HHHHHHHHHHHHH
Q 010008          457 FVAIADFIHEGVE  469 (520)
Q Consensus       457 ~~~la~~i~~~l~  469 (520)
                      ++++++.|+++++
T Consensus       358 i~~~~~~l~~~~~  370 (371)
T PRK13520        358 IENFLEDLKEVKK  370 (371)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987654

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.93  E-value=3.1e-23  Score=216.62  Aligned_cols=335  Identities=16%  Similarity=0.149  Sum_probs=217.2

Q ss_pred             hccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-
Q 010008           93 FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-  169 (520)
Q Consensus        93 ~~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-  169 (520)
                      .+.|+|..++|  +.++.+++++...+......+|+.      .....++    ++.+++++|++++    +|.+++|+ 
T Consensus        28 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~------~~g~~~l----r~~ia~~l~~~~~----~v~~~~g~t   93 (380)
T PRK06225         28 KEMIWMGQNTNHLGPHEEVREAMIRCIEEGEYCKYPP------PEGFPEL----RELILKDLGLDDD----EALITAGAT   93 (380)
T ss_pred             CCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCC------CcchHHH----HHHHHHhcCCCCC----cEEEeCCHH
Confidence            35688887776  468899999988876532223332      1112333    4678889999875    45556665 


Q ss_pred             HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC-C-CCCCCHHHHHHHhhhcCCcEEE
Q 010008          170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-S-TGLVDYDMLEKTAILFRPKLII  247 (520)
Q Consensus       170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-~-~~~iD~d~le~~i~~~~pklIi  247 (520)
                      +|+..++.+++++||+|++++|.|..+.        ..+...|.  ++++++++. + ++.+|++++++.+++ ++++|+
T Consensus        94 ~al~~~~~~~~~~gd~vl~~~p~y~~~~--------~~~~~~g~--~~~~v~~~~~~~~~~~d~~~l~~~~~~-~~~~v~  162 (380)
T PRK06225         94 ESLYLVMRAFLSPGDNAVTPDPGYLIID--------NFASRFGA--EVIEVPIYSEECNYKLTPELVKENMDE-NTRLIY  162 (380)
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCCCcchH--------HHHHHhCc--eEEeeccccccCCccCCHHHHHhhcCC-CceEEE
Confidence            9999999999999999999998664321        12233454  556666532 2 468999999999887 799998


Q ss_pred             EcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEEEeccCccc--CCCCceEEEeeC
Q 010008          248 AGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSL--RGPRGGMIFFKK  319 (520)
Q Consensus       248 ~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S~hK~l--~GprgG~I~~~~  319 (520)
                      +..|+||+  ..   ++++|.++|+++|+++|+|+++ .++.........+. ...+++.|++|++  +|.|.|++++++
T Consensus       163 l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RiG~i~~~~  241 (380)
T PRK06225        163 LIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTY-RDFAREHTLAAEYAPEHTVTSYSFSKIFGMAGLRIGAVVATP  241 (380)
T ss_pred             EeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhH-HHHhccCCchhhcCCCCEEEEeechhhcCCccceeEEEecCH
Confidence            88888886  33   5889999999999999999984 23221110000011 2357788999988  477889999987


Q ss_pred             CCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecCCCCCeeE
Q 010008          320 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLV  398 (520)
Q Consensus       320 ~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~gt~~~~~  398 (520)
                            ++.+.+..... ...+. +....++...++... ....+...+...++++.+.+.|.+ .|+.+...+....++
T Consensus       242 ------~l~~~~~~~~~-~~~~~-~~~~~~~a~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~  312 (380)
T PRK06225        242 ------DLIEVVKSIVI-NDLGT-NVIAQEAAIAGLKVK-DEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMM  312 (380)
T ss_pred             ------HHHHHHHHHHh-cccCC-CHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEE
Confidence                  66666554321 11222 222222223344331 112244445556667778888877 464332111234567


Q ss_pred             EEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          399 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       399 ~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      |+++...+++..++.+.|.+.||.+..+...+  ....++++|+++.      .++++++++++.|++++..
T Consensus       313 ~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~--~~~~~~~iR~s~~------~~~e~l~~~~~~l~~~~~~  376 (380)
T PRK06225        313 VIDISEAGIDPEDLVEYLLERKIFVRQGTYTS--KRFGDRYIRVSFS------IPREQVEVFCEEFPDVVET  376 (380)
T ss_pred             EEEcccccCCHHHHHHHHHHCCEEEcCCcccC--cCCCCceEEEEeC------CCHHHHHHHHHHHHHHHHH
Confidence            88876556778888888889999995432111  1234578999864      2479999999999988763

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.93  E-value=5.8e-23  Score=215.36  Aligned_cols=338  Identities=17%  Similarity=0.171  Sum_probs=220.2

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      ..|+|..+++.  +++.+.+++...+...+. .|+      .....+.+++.+.+++.+.+|+..+.. -+|.+++|+ +
T Consensus        31 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~------~~~g~~~lr~~ia~~~~~~~~~~~~~~-~~i~it~G~~~  102 (391)
T PRK07309         31 GILKLTLGEPDFTTPDHVKEAAKRAIDANQS-HYT------GMAGLLELRQAAADFVKEKYNLDYAPE-NEILVTIGATE  102 (391)
T ss_pred             CeEEcCCCCCCCCCCHHHHHHHHHHHhcCCC-CCC------CCCCcHHHHHHHHHHHHHHhCCCCCCC-CcEEEeCChHH
Confidence            46777766653  467788888876653321 232      222245677677778877777742210 156678887 8


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc--CCcEEEE
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIA  248 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~--~pklIi~  248 (520)
                      |+.+++.++++|||+|++.+|.|+++..        .+...|.  +++.++.++.++.+|+++++++++..  ++|+|++
T Consensus       103 al~~~~~~~~~~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l  172 (391)
T PRK07309        103 ALSASLTAILEPGDKVLLPAPAYPGYEP--------IVNLVGA--EIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVIL  172 (391)
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCCcchHH--------HHHHcCC--EEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEE
Confidence            9999999999999999999998876531        2334555  56666666445689999999988642  5899999


Q ss_pred             cCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC----cccEEEeccCccc--CCCCceEEEe
Q 010008          249 GASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSL--RGPRGGMIFF  317 (520)
Q Consensus       249 ~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~----~aDiv~~S~hK~l--~GprgG~I~~  317 (520)
                      +.|+||+  ..   ++++|.++|+++|+++++|+++ ..+.+.+....++.    .--+++.|++|++  +|.|.||+++
T Consensus       173 ~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~  251 (391)
T PRK07309        173 NYPANPTGVTYSREQIKALADVLKKYDIFVISDEVY-SELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLIFA  251 (391)
T ss_pred             ECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccc-cceeeCCCCCCCHHHhccCCEEEEecChhhccCccceeEEEEe
Confidence            8889887  34   4888999999999999999984 45554332111221    1227889999986  7899999999


Q ss_pred             eCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCee
Q 010008          318 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL  397 (520)
Q Consensus       318 ~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~  397 (520)
                      ++      ++.+++.........+.+.. ...++..+++.. ........+++.++++.+.+.|.+.|+.+..+. .+.+
T Consensus       252 ~~------~~~~~~~~~~~~~~~~~~~~-~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~-gg~~  322 (391)
T PRK07309        252 PA------EFTAQLIKSHQYLVTAATTM-AQFAAVEALTNG-KDDALPMKKEYIKRRDYIIEKMTDLGFKIIKPD-GAFY  322 (391)
T ss_pred             CH------HHHHHHHHHHhhcccCCChH-HHHHHHHHHhCC-hhHHHHHHHHHHHHHHHHHHHHHHCCCeecCCC-eeEE
Confidence            87      66666654321111222222 233333344321 112244556778888889999988888776542 2455


Q ss_pred             EEEEecCC-CCCHHHHH-HHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          398 VLVDLRPM-GIDGARVE-KILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       398 ~~vd~~~~-g~~~~~~~-~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +|+++... +.+..++. +++++.||.+    .||.. +...+++|||++..      ..+++++..+.|.++++
T Consensus       323 ~~~~l~~~~~~~~~~~~~~l~~~~gv~v----~pg~~f~~~~~~~iRi~~~~------~~~~l~~~i~~l~~~~~  387 (391)
T PRK07309        323 IFAKIPAGYNQDSFKFLQDFARKKAVAF----IPGAAFGPYGEGYVRLSYAA------SMETIKEAMKRLKEYME  387 (391)
T ss_pred             EEEECCCCCCCCHHHHHHHHHHhCCEEE----eCchhhCCCCCCEEEEEecC------CHHHHHHHHHHHHHHHH
Confidence            56666431 22445555 5567899999    45543 23346799998652      35788888888877664

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.93  E-value=1.8e-23  Score=216.78  Aligned_cols=311  Identities=17%  Similarity=0.153  Sum_probs=206.7

Q ss_pred             CCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC
Q 010008          101 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL  180 (520)
Q Consensus       101 sen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all  180 (520)
                      +-+++|+.|+++|.....+ |         +.    .+++.+.++++++++||++.    + +.+.+|++|+++++.+++
T Consensus        21 g~s~~~~~v~~a~~~~~~~-~---------~~----~~~~~~~~~~~~a~~~g~~~----~-~~~~g~t~al~~al~al~   81 (363)
T TIGR01437        21 GVSTVSDEVADAQKRGAQN-Y---------FE----IKELVNKTGEYIANLLGVED----A-VIVSSASAGIAQSVAAVI   81 (363)
T ss_pred             CCCCCCHHHHHHHHHHHhc-C---------CC----HHHHHHHHHHHHHHhhCCCe----E-EEEcCHHHHHHHHHHHHh
Confidence            4456899999999887643 2         21    23344456688999999874    2 444667799999999999


Q ss_pred             CCCC---------------EEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcE
Q 010008          181 KPHD---------------RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKL  245 (520)
Q Consensus       181 ~pGD---------------~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pkl  245 (520)
                      +|||               +|+++.+.+. ++  +. +....+.+.|.  +++.++++   +.+|++++++++++ +||+
T Consensus        82 ~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~-~~--~~-~~~~~~~~~g~--~~v~v~~~---~~~d~~~le~ai~~-~t~a  151 (363)
T TIGR01437        82 TRGNRYLVENLHDSKIEVNEVVLPKGHNV-DY--GA-PVETMVRLGGG--KVVEAGYA---NECSAEQLEAAITE-KTAA  151 (363)
T ss_pred             cCCCcchhhcccccccccceEEEECccch-hc--CC-chHHHHHhcCC--eEEEEcCC---CCCCHHHHHHhcCh-hceE
Confidence            9998               7777653221 11  00 00112334554  66666553   56999999999998 8997


Q ss_pred             EE-EcCCCCC-C-CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEEEeccCcccCCCCceEEEeeCCC
Q 010008          246 II-AGASAYP-R-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDP  321 (520)
Q Consensus       246 Ii-~~~s~~p-~-~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S~hK~l~GprgG~I~~~~~~  321 (520)
                      |+ +++++++ + ..|+++|.++|+++|+++++|++|...+      ..... ++|++++|+||+|+||++|+++.++  
T Consensus       152 i~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~------~~~~~~g~D~~~~S~~K~l~gp~~G~l~~~~--  223 (363)
T TIGR01437       152 ILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDL------QKYYRLGADLVIYSGAKAIEGPTSGLVLGKK--  223 (363)
T ss_pred             EEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCch------HHHHHcCCCEEEEeCCcccCCCceEEEEEcH--
Confidence            76 4454443 3 7899999999999999999999986221      11112 5899999999999999999998876  


Q ss_pred             cchhhHHHhhcccCCC---CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecC--CC--
Q 010008          322 VLGVELESAINNAVFP---GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSG--GS--  393 (520)
Q Consensus       322 ~~~~~l~~~i~~~~~p---~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~--gt--  393 (520)
                          ++.+.+......   ..+.+  ...++++..|++.+...+ .+..++..++++.+.+.|.+ .|+.+...  ..  
T Consensus       224 ----~~i~~~~~~~~~~~~~~~~~--~~~~~gl~aAl~~~~~~~-~~~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~  296 (363)
T TIGR01437       224 ----KYIEWVKLQSKGIGRAMKVG--KENILGLTAALEQYLSTG-KESGAEMVAKLTPFIEALNTLKGVSASIVQDEAGR  296 (363)
T ss_pred             ----HHHHHHHhccCCCcceeccC--HHHHHHHHHHHHHHHccC-cccHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence                555544221111   11111  123677777887765322 33444555677889999988 58887632  11  


Q ss_pred             --CCeeEEEEecCCCCCHHHHHHHHhhcC--eEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          394 --DNHLVLVDLRPMGIDGARVEKILDMAS--ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       394 --~~~~~~vd~~~~g~~~~~~~~~L~~~g--I~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                        +...+.++....++++.++.+.|.+.|  |.++..       ....+.+|++...     ++++|++.++++++++
T Consensus       297 ~~~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~~-------~~~~~~~~l~~~~-----~~~~e~~~~~~~l~~~  362 (363)
T TIGR01437       297 DIARAEIRFDESELGMTAADVVQALRQGEPAIYTRGY-------KANEGIIEIDPRS-----VTGGQLDIIVERIREI  362 (363)
T ss_pred             cCceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEeee-------eecCCeEEEEeec-----CCHHHHHHHHHHHHHh
Confidence              112233444335788999999998767  666432       1235678887653     5589999999999875

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PRK07683 aminotransferase A; Validated

Probab=99.93  E-value=3.6e-23  Score=216.63  Aligned_cols=336  Identities=13%  Similarity=0.131  Sum_probs=220.6

Q ss_pred             hccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceeeecCCh
Q 010008           93 FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSG  168 (520)
Q Consensus        93 ~~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V~~~sG  168 (520)
                      .+.|+|..+++  +.++.+.+++...+.+.+ .+|+.      .....++++...+++.+.+|+  +++   .+|.+++|
T Consensus        28 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~-~~Y~~------~~g~~~lr~~ia~~l~~~~g~~~~~~---~~I~~t~G   97 (387)
T PRK07683         28 DNLISLTIGQPDFPTPSHVKEAAKRAITENY-TSYTH------NAGLLELRKAACNFVKDKYDLHYSPE---SEIIVTIG   97 (387)
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC------CCCCHHHHHHHHHHHHHHhCCCCCCC---CcEEEeCC
Confidence            35578877654  346788899888776432 23332      122346666666777666676  343   14556777


Q ss_pred             H-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 010008          169 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII  247 (520)
Q Consensus       169 s-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi  247 (520)
                      + +|+.+++.+++++||+|++++|.|.++..        .+...|.  ++++++++.+++.+|.+++++.+++ ++|+|+
T Consensus        98 ~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~i~  166 (387)
T PRK07683         98 ASEAIDIAFRTILEPGTEVILPAPIYPGYEP--------IIRLCGA--KPVFIDTRSTGFRLTAEALENAITE-KTRCVV  166 (387)
T ss_pred             hHHHHHHHHHHhCCCCCEEEEcCCCccchHH--------HHHHcCC--EEEEeecCcccCCCCHHHHHHhcCc-CceEEE
Confidence            6 99999999999999999999997765421        2334454  6777777755677899999999877 899999


Q ss_pred             EcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-----cccEEEeccCccc--CCCCceEE
Q 010008          248 AGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCDVVTTTTHKSL--RGPRGGMI  315 (520)
Q Consensus       248 ~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-----~aDiv~~S~hK~l--~GprgG~I  315 (520)
                      +..++||+  ..   ++++|.++|+++|+++|+|+++. .+.+.+.......     .-.+++.|++|.+  +|.|.||+
T Consensus       167 i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i  245 (387)
T PRK07683        167 LPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYS-ELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFL  245 (387)
T ss_pred             EeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccc-cceeCCCcCChhhccCCcCCeEEEeeccccccCccceeEEE
Confidence            99999987  33   47889999999999999999954 4443322111111     1247889999987  78899999


Q ss_pred             EeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCC
Q 010008          316 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDN  395 (520)
Q Consensus       316 ~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~  395 (520)
                      ++++      ++.+++.........+.+...+.++ ...+..- ....+...+++.++++.+.+.|.+.|+.+..+ ..+
T Consensus       246 ~~~~------~l~~~~~~~~~~~~~~~~~~~q~~~-~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~  316 (387)
T PRK07683        246 FAPS------YLAKHILKVHQYNVTCASSISQYAA-LEALTAG-KDDAKMMRHQYKKRRDYVYNRLISMGLDVEKP-TGA  316 (387)
T ss_pred             EcCH------HHHHHHHHHHHhccCCCChHHHHHH-HHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHcCCcccCC-Cee
Confidence            9987      5666554321111112222322222 2234321 12235556777888889999998888776544 234


Q ss_pred             eeEEEEecCCCCCHHHH-HHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          396 HLVLVDLRPMGIDGARV-EKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       396 ~~~~vd~~~~g~~~~~~-~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ++.|+.+...+++..++ .++|+++||.+.    ||.. +...++++||++.      .+++++++..+.|.+++.
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~----pg~~f~~~~~~~~Ri~~~------~~~~~~~~al~~l~~~l~  382 (387)
T PRK07683        317 FYLFPSIGHFTMSSFDFALDLVEEAGLAVV----PGSAFSEYGEGYVRLSYA------YSIETLKEGLDRLEAFLQ  382 (387)
T ss_pred             EEEEEecccCCCCHHHHHHHHHHhCCEEEc----CchhhCCCCCCeEEEEec------CCHHHHHHHHHHHHHHHH
Confidence            55566665434555554 456789999994    4443 2234679999864      247888888888887765

>PRK07550 hypothetical protein; Provisional

Probab=99.93  E-value=6.5e-23  Score=214.61  Aligned_cols=334  Identities=14%  Similarity=0.080  Sum_probs=217.6

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      ..|+|..+++.  .++.+.+++.+.+.+.....|+.   ..|   ..++++.+.+++.+.+|.....  -+|.+++|+ +
T Consensus        30 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G---~~~lr~~ia~~~~~~~g~~~~~--~~i~~t~G~~~  101 (386)
T PRK07550         30 PLIDLSQAVPGYPPPPELLRALAEAAADPAAHLYGP---VEG---LPELREAYAAHYSRLYGAAISP--EQVHITSGCNQ  101 (386)
T ss_pred             CeEEeCCCCCCCCCCHHHHHHHHHHHhCcCCcCCCC---CCC---CHHHHHHHHHHHHHHhCCCCCc--ceEEEecCcHH
Confidence            45778777753  46788888887764322222321   112   3466666667888887854321  256678886 8


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEEEEc
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAG  249 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklIi~~  249 (520)
                      |+..++.++++|||+|++++|.|.++..        .+...|.  ++++++++++ ++.+|.+++++++++ ++++|++.
T Consensus       102 al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~~~~~l~~~~~~-~~~~v~~~  170 (386)
T PRK07550        102 AFWAAMVTLAGAGDEVILPLPWYFNHKM--------WLDMLGI--RPVYLPCDEGPGLLPDPAAAEALITP-RTRAIALV  170 (386)
T ss_pred             HHHHHHHHhcCCCCEEEEcCCCCcchHH--------HHHhcCC--EEEEEecCCCcCCCCCHHHHHHHhcc-cCcEEEEe
Confidence            9999999999999999999998765531        2234454  6777777643 467899999999987 89998888


Q ss_pred             CCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCC-CCC----cc-cEEEeccCccc--CCCCceEEE
Q 010008          250 ASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD-PFK----YC-DVVTTTTHKSL--RGPRGGMIF  316 (520)
Q Consensus       250 ~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~-p~~----~a-Div~~S~hK~l--~GprgG~I~  316 (520)
                      .|+||+  ..+   +++|.++|+++|+++|+|+++ .++...+..+. .+.    +. .+++.|++|++  +|.|.||++
T Consensus       171 ~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~  249 (386)
T PRK07550        171 TPNNPTGVVYPPELLHELYDLARRHGIALILDETY-RDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVV  249 (386)
T ss_pred             CCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccc-hhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeee
Confidence            888987  444   788999999999999999984 34433221111 111    11 36789999987  588999999


Q ss_pred             eeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCC
Q 010008          317 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDN  395 (520)
Q Consensus       317 ~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~  395 (520)
                      +++      ++.+.+.........+.+...+. +++.++... ....++..+++.++++.+.+.|.+. ++.+...  ..
T Consensus       250 ~~~------~~~~~~~~~~~~~~~~~s~~~q~-~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--g~  319 (386)
T PRK07550        250 ASP------ARIAEIEKFMDTVAICAPRIGQI-AVAWGLPNL-ADWRAGNRAEIARRRDAFRAVFARLPGWELLAS--GA  319 (386)
T ss_pred             cCH------HHHHHHHHHHhhcccCCCcHHHH-HHHHHhccH-HHHHHHHHHHHHHHHHHHHHHHHhCCCceeCCC--ce
Confidence            987      56655554332222222233222 333344321 1222455667778888899999873 6655432  34


Q ss_pred             eeEEEEecCCCCCHHHHHHH-HhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          396 HLVLVDLRPMGIDGARVEKI-LDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       396 ~~~~vd~~~~g~~~~~~~~~-L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      .++|+.+...+++..++.+. +++.||.+.    ||.. +....+++||++..     ..++++++..+.|.+
T Consensus       320 ~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~----pg~~f~~~~~~~iRis~~~-----~~~~~~~~~~~~l~~  383 (386)
T PRK07550        320 YFAYVRHPFPDRPSREVARRLAKEAGILCL----PGTMFGPGQEGYLRLAFAN-----ADVAGIGELVERLRA  383 (386)
T ss_pred             EEEEecCCCCCCCHHHHHHHHHHhcCEEEe----CchhhCCCCCCEEEEEeec-----CCHHHHHHHHHHHHh
Confidence            66677765335667776665 578999994    4432 22235689998743     236888888887764

>PRK14012 cysteine desulfurase; Provisional

Probab=99.93  E-value=2.4e-23  Score=219.26  Aligned_cols=344  Identities=16%  Similarity=0.178  Sum_probs=221.9

Q ss_pred             ceEe-cCCCCChHHHHHHHhhhhh--ccCCCCCCCCCCC-CcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHH
Q 010008           96 LELI-ASENFTSRAVMEAVGSCLT--NKYSEGLPGKRYY-GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA  171 (520)
Q Consensus        96 i~Li-asen~~~~~V~ea~~s~l~--~~y~~G~p~~ryy-~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A  171 (520)
                      +.|. ++..++|+.|++++...+.  +.+  +.|+.+-+ .+....+.++ .+++++++++|++++++   +...+|++|
T Consensus         5 iyld~a~~~~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~r~~ia~~~g~~~~~v---~~~~g~t~a   78 (404)
T PRK14012          5 IYLDYSATTPVDPRVAEKMMPYLTMDGTF--GNPASRSHRFGWQAEEAVD-IARNQIADLIGADPREI---VFTSGATES   78 (404)
T ss_pred             EEecCcCCCCCCHHHHHHHHHHHHhcccC--cCCCchhhHHHHHHHHHHH-HHHHHHHHHcCcCcCeE---EEeCCHHHH
Confidence            4444 3456889999999988876  444  23332111 1111112233 45678999999987632   233455689


Q ss_pred             HHHHHHhh----CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 010008          172 NFEVYTAI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII  247 (520)
Q Consensus       172 ~~~~l~al----l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi  247 (520)
                      +..++.++    +++||+|++.+++|.+......     .+...|.  +++.++++ +++.+|+++|++++++ ++++|+
T Consensus        79 l~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~-----~~~~~g~--~~~~v~~~-~~g~~d~~~l~~~i~~-~t~lv~  149 (404)
T PRK14012         79 DNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCR-----QLEREGF--EVTYLDPQ-SNGIIDLEKLEAAMRD-DTILVS  149 (404)
T ss_pred             HHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHH-----HHHhCCC--EEEEEccC-CCCcCCHHHHHHhcCC-CCEEEE
Confidence            88887766    4799999999887755432211     1112354  56666666 4688999999999987 899998


Q ss_pred             EcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcch
Q 010008          248 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLG  324 (520)
Q Consensus       248 ~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~  324 (520)
                      +...+|++  ..|+++|.++|+++|+++++|++|+.|....+....   ++|++++|+||.+ ||.| |+++++++    
T Consensus       150 ~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~---~~D~~~~s~~K~~-gp~g~G~l~~~~~----  221 (404)
T PRK14012        150 IMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDLSKL---KVDLMSFSAHKIY-GPKGIGALYVRRK----  221 (404)
T ss_pred             EECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccCcccC---CCCEEEEehhhcc-CCCceEEEEEecC----
Confidence            88777665  789999999999999999999999887654332211   5899999999954 7766 88888763    


Q ss_pred             hhHHHhhcccCCC------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecCCC--CC
Q 010008          325 VELESAINNAVFP------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGS--DN  395 (520)
Q Consensus       325 ~~l~~~i~~~~~p------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~gt--~~  395 (520)
                        ...++......      ...|+++...+.++..|++.+. .+.++..++..+.++++.+.|.+ .++.+.....  ..
T Consensus       222 --~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~  298 (404)
T PRK14012        222 --PRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAK-EEMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVP  298 (404)
T ss_pred             --CCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCC
Confidence              11122111000      1246677888888888887654 34566677778888888888876 4566543211  12


Q ss_pred             eeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC------------CCCCCCEEEEccCCccccCCCHHHHHHHHHH
Q 010008          396 HLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK------------SALVPGGIRIGSPAMTTRGFSEKEFVAIADF  463 (520)
Q Consensus       396 ~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~------------~~~~~~giRig~~~~tt~g~~~~d~~~la~~  463 (520)
                      +..++.+..  .++..+...|++.+|.....+.|...            .....+.||++++..++    ++|++++++.
T Consensus       299 ~~~~~~~~~--~~~~~~~~~l~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t----~~dvd~~~~~  372 (404)
T PRK14012        299 GNLNVSFNY--VEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTT----EEEIDYAIEL  372 (404)
T ss_pred             CEEEEEEeC--cCHHHHHHhCCCeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCC----HHHHHHHHHH
Confidence            222222221  23456666665444443322233211            01124789999987654    8999999999


Q ss_pred             HHHHHHHH
Q 010008          464 IHEGVEIT  471 (520)
Q Consensus       464 i~~~l~~~  471 (520)
                      |+++++..
T Consensus       373 l~~~~~~~  380 (404)
T PRK14012        373 VRKSIGKL  380 (404)
T ss_pred             HHHHHHHH
Confidence            99987754

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.93  E-value=8e-23  Score=207.91  Aligned_cols=340  Identities=16%  Similarity=0.142  Sum_probs=245.0

Q ss_pred             cceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHH
Q 010008           95 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE  174 (520)
Q Consensus        95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~  174 (520)
                      .+-|+++...+++.|++||.....+.++           .++.+.++ .+.+.++..|+.+.. + +.+...||+.|+.+
T Consensus         6 ~~Ll~PGP~~v~~~V~~am~~~~~~h~s-----------~~F~~~~~-~~~~~L~~v~~t~~~-~-~~ll~gsGt~amEA   71 (383)
T COG0075           6 RLLLTPGPVPVPPRVLLAMARPMVGHRS-----------PDFVGIMK-EVLEKLRKVFGTENG-D-VVLLSGSGTLAMEA   71 (383)
T ss_pred             ceeeeCCCCCCCHHHHHHhcCCCCCCCC-----------HHHHHHHH-HHHHHHHHHhcCCCC-c-EEEEcCCcHHHHHH
Confidence            3678899999999999999876655432           23445554 456789999999842 2 45667889999999


Q ss_pred             HHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc-CCcEEEEcCCCC
Q 010008          175 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-RPKLIIAGASAY  253 (520)
Q Consensus       175 ~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~-~pklIi~~~s~~  253 (520)
                      ++.++++|||+||+...-   .+.+.+.   ..+...|.  +++.+... ....+|++++++++++. ..++|.+.+.-.
T Consensus        72 av~sl~~pgdkVLv~~nG---~FG~R~~---~ia~~~g~--~v~~~~~~-wg~~v~p~~v~~~L~~~~~~~~V~~vH~ET  142 (383)
T COG0075          72 AVASLVEPGDKVLVVVNG---KFGERFA---EIAERYGA--EVVVLEVE-WGEAVDPEEVEEALDKDPDIKAVAVVHNET  142 (383)
T ss_pred             HHHhccCCCCeEEEEeCC---hHHHHHH---HHHHHhCC--ceEEEeCC-CCCCCCHHHHHHHHhcCCCccEEEEEeccC
Confidence            999999999999998752   2322321   12344555  44444343 45689999999999852 356777765544


Q ss_pred             CC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCC------c--
Q 010008          254 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDP------V--  322 (520)
Q Consensus       254 p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~------~--  322 (520)
                      ++  ..|+++|+++|++||+++++|+.-+.|.........   +.|+++++.+|+|.+|.| |++..+++.      .  
T Consensus       143 STGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~w---giDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~  219 (383)
T COG0075         143 STGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEW---GIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKH  219 (383)
T ss_pred             cccccCcHHHHHHHHHHcCCEEEEEecccCCCcccchhhc---CccEEEecCchhccCCCccceeEECHHHHHHHhcCCC
Confidence            44  779999999999999999999876666543332222   699999999999999999 999988741      0  


Q ss_pred             --chhh---HHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCC-CCCe
Q 010008          323 --LGVE---LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG-SDNH  396 (520)
Q Consensus       323 --~~~~---l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~g-t~~~  396 (520)
                        ...+   +.+..++.  ..+..+|..+.+.|+..||+.+..++++++.+++..+++++.+.+.+.|++++... ..+.
T Consensus       220 ~~~ylDL~~~~~~~~~~--~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~~~~~~s~  297 (383)
T COG0075         220 PSFYLDLKKWLKYMEKK--GSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEALGLELFADPERRSP  297 (383)
T ss_pred             CceeecHHHHHHHHhhc--CCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCccccCcccCCC
Confidence              0111   22222221  23345789999999999999999888999999999999999999999999988732 1222


Q ss_pred             eEEEEecCCCCCHHHHHH-HHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          397 LVLVDLRPMGIDGARVEK-ILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       397 ~~~vd~~~~g~~~~~~~~-~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      .+..-..+.++++.++.. .++++||.+..+     .++.....+|||+...    ...+|+...+.+|..++...
T Consensus       298 tvta~~~P~g~~~~~~~~~~~~~~g~~i~gg-----~~~l~gkifRIGhMG~----~~~~dv~~~l~ale~~L~~~  364 (383)
T COG0075         298 TVTAIKVPEGVDDKKVRRALLKEYGVEIAGG-----QGPLKGKIFRIGHMGN----VRPEDVLAALAALEAALREL  364 (383)
T ss_pred             ceEEEECCCCCCcHHHHHHHHHhCCEEeccc-----ccccCccEEEEecCcc----CCHHHHHHHHHHHHHHHHHc
Confidence            233334467777655444 667789998432     2345567899998752    56899999999999998754

>PRK07324 transaminase; Validated

Probab=99.93  E-value=1.6e-23  Score=218.12  Aligned_cols=327  Identities=19%  Similarity=0.174  Sum_probs=211.4

Q ss_pred             ccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHc-CCCCCCCceeeecCChH-
Q 010008           94 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF-NLDENKWGVNVQPLSGS-  169 (520)
Q Consensus        94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lf-g~~~~~~~~~V~~~sGs-  169 (520)
                      +.++|..+|.  .+++.+ +++...+.+.. .+|..   ..|.   .+++    +.+++++ +++++    +|.+++|+ 
T Consensus        27 ~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~-~~Y~~---~~G~---~~lr----~~ia~~~~~~~~~----~vi~t~G~~   90 (373)
T PRK07324         27 CIDSLTLEELLALAGKNP-EAFYQELGQKK-LTYGW---IEGS---PEFK----EAVASLYQNVKPE----NILQTNGAT   90 (373)
T ss_pred             CCCCCcHHHHHhccCcch-HHHHHHHhcCC-ccCCC---CCCC---HHHH----HHHHHHhcCCChh----hEEEcCChH
Confidence            4566766664  356666 76665554321 13332   1232   3444    4455555 46665    55567777 


Q ss_pred             HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCC-CCCCHHHHHHHhhhcCCcEEEE
Q 010008          170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILFRPKLIIA  248 (520)
Q Consensus       170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~-~~iD~d~le~~i~~~~pklIi~  248 (520)
                      +|+.+++.++++|||+|+++.|.|..+..        .+...|.  +++.+++++++ +.+|++++++.+++ ++|+|++
T Consensus        91 ~al~~~~~~l~~~gd~Vl~~~P~y~~~~~--------~~~~~g~--~v~~v~~~~~~~~~~d~~~l~~~~~~-~~kli~i  159 (373)
T PRK07324         91 GANFLVLYALVEPGDHVISVYPTYQQLYD--------IPESLGA--EVDYWQLKEENGWLPDLDELRRLVRP-NTKLICI  159 (373)
T ss_pred             HHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEEecccccCCCCCHHHHHHhCCC-CCcEEEE
Confidence            99999999999999999999987654321        2234454  66677776543 56899999998887 8999999


Q ss_pred             cCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCCc--ccEEEeccCccc--CCCCceEEEeeC
Q 010008          249 GASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY--CDVVTTTTHKSL--RGPRGGMIFFKK  319 (520)
Q Consensus       249 ~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~--aDiv~~S~hK~l--~GprgG~I~~~~  319 (520)
                      ++|+||+  ..+   +++|.++|+++|+++++|++ |.++...+..++....  ..|++.|++|++  +|+|.||+++++
T Consensus       160 ~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~-y~~l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G~RiG~i~~~~  238 (373)
T PRK07324        160 NNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEV-YRPLDEDGSTPSIADLYEKGISTNSMSKTYSLPGIRVGWIAANE  238 (373)
T ss_pred             eCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcc-ccccccCCCCCChhhccCCEEEEecchhhcCCccceeEEEecCH
Confidence            9999987  566   88899999999999999998 4566554322222221  237889999986  699999999976


Q ss_pred             CCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCCeeE
Q 010008          320 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLV  398 (520)
Q Consensus       320 ~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~~~  398 (520)
                            ++.+++.+.......+.+...+.++. .+++.. ....+...+.+.++++.+.+.|.+. ++.++.+. ...+.
T Consensus       239 ------~li~~~~~~~~~~~~~~~~~~q~~a~-~~l~~~-~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~-gg~~~  309 (373)
T PRK07324        239 ------EVIDILRKYRDYTMICAGVFDDMLAS-LALEHR-DAILERNRKIVRTNLAILDEWVAKEPRVSYVKPK-AVSTS  309 (373)
T ss_pred             ------HHHHHHHHHhCcEEecCChHHHHHHH-HHHcCH-HHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCC-ceEEE
Confidence                  67776655432222233333344333 234321 1123555666777888888888774 66655442 23344


Q ss_pred             EEEecCCCCCHHHHH-HHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          399 LVDLRPMGIDGARVE-KILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       399 ~vd~~~~g~~~~~~~-~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ++.+.. +++..++. ++|+++||.+    .||... ..++++||+..      ..++.+++..+.|.+.+.
T Consensus       310 ~i~~~~-~~~~~~~~~~ll~~~gv~v----~pg~~F-~~~~~iRis~~------~~~~~l~~~l~rl~~~l~  369 (373)
T PRK07324        310 FVKLDV-DMPSEDFCLKLLKETGVLL----VPGNRF-DLEGHVRIGYC------CDTETLKKGLKKLSEFLR  369 (373)
T ss_pred             EEEeCC-CCCHHHHHHHHHHhcCEEE----ECcccc-CCCCeEEEEec------CCHHHHHHHHHHHHHHHH
Confidence            555532 34555554 5567899999    555531 13579999863      236777777777777664

>PRK08912 hypothetical protein; Provisional

Probab=99.93  E-value=6.6e-23  Score=214.63  Aligned_cols=359  Identities=15%  Similarity=0.138  Sum_probs=226.7

Q ss_pred             ccccChHHHHHHHHHHHHhhccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 010008           74 LGEADPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA  151 (520)
Q Consensus        74 l~~~d~~~~~~~~~e~~~~~~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~l  151 (520)
                      +....+..+..+.+... ....|+|..+..  ..|+.+.+++...+.+.. .+|+.   ..|   ..++++...+++.+.
T Consensus         8 ~~~~~~~~~~~~~~~~~-~~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~-~~Y~~---~~G---~~~lr~~ia~~~~~~   79 (387)
T PRK08912          8 FADLPTTIFEVMSQLAR-EHGAINLGQGFPDDPGPEDVRRAAADALLDGS-NQYPP---MMG---LPELRQAVAAHYARF   79 (387)
T ss_pred             HhhCCCCHHHHHHHHHh-hCCeEEccCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC---CCC---cHHHHHHHHHHHHHH
Confidence            44444444444433332 134577765443  346778888776654332 23433   122   235555666777777


Q ss_pred             cCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCC
Q 010008          152 FNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVD  230 (520)
Q Consensus       152 fg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD  230 (520)
                      +|.+.+.. .+|.+++|+ +|+.+++.++++|||+|++++|.|.++..        .+...|.  +++.++++++++.+|
T Consensus        80 ~g~~~~~~-~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~  148 (387)
T PRK08912         80 QGLDLDPE-TEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLP--------LIRRAGG--VPRLVRLEPPHWRLP  148 (387)
T ss_pred             hCCCCCCc-ccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHH--------HHHHcCC--EEEEEecCcccCcCC
Confidence            78642211 145667776 89999999999999999999998765421        2334455  566666765567899


Q ss_pred             HHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCC---C---CcccEE
Q 010008          231 YDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP---F---KYCDVV  299 (520)
Q Consensus       231 ~d~le~~i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p---~---~~aDiv  299 (520)
                      ++++++.+.. ++|+|++++++||+  ..+   +++|.++|+++|+++|+|+++. .+.+.+....+   +   ...+++
T Consensus       149 ~~~l~~~~~~-~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~i~  226 (387)
T PRK08912        149 RAALAAAFSP-RTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWE-HVVFDGRRHIPLMTLPGMRERTVK  226 (387)
T ss_pred             HHHHHHHhCc-cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhh-hcccCCCCCcChhhCCCccCceEE
Confidence            9999999877 89999999999997  454   6778899999999999999954 44433211111   1   124588


Q ss_pred             EeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 010008          300 TTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL  377 (520)
Q Consensus       300 ~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l  377 (520)
                      +.|++|.+  +|.|.||+++++      ++.+.+.........+.+...+ +++..++... ...+++..+++.++++.+
T Consensus       227 ~~S~SK~~g~~GlRiG~~~~~~------~~~~~l~~~~~~~~~~~~~~~q-~~~~~~l~~~-~~~~~~~~~~~~~~~~~l  298 (387)
T PRK08912        227 IGSAGKIFSLTGWKVGFVCAAP------PLLRVLAKAHQFLTFTTPPNLQ-AAVAYGLGKP-DDYFEGMRADLARSRDRL  298 (387)
T ss_pred             EeechhhccCcCceeEEEecCH------HHHHHHHHHHhhccccCChHHH-HHHHHHHhCC-HHHHHHHHHHHHHHHHHH
Confidence            99999985  788899999987      5665554332221122222222 2333344321 123366778888899999


Q ss_pred             HHHHHHCCCEEecCCCCCeeEEEEecCCC--CCHHHHHHH-HhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCH
Q 010008          378 ASRLVELGYKLVSGGSDNHLVLVDLRPMG--IDGARVEKI-LDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSE  454 (520)
Q Consensus       378 ~~~L~~~G~~v~~~gt~~~~~~vd~~~~g--~~~~~~~~~-L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~  454 (520)
                      .+.|.+.|+.+..+ ..++++|+++...+  .+..++.+. +++.||.+..+...+. ....++++||++..      .+
T Consensus       299 ~~~L~~~g~~~~~~-~g~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~-~~~~~~~iRl~~~~------~~  370 (387)
T PRK08912        299 AAGLRRIGFPVLPS-QGTYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYE-EDPVTSVVRFCFAK------RD  370 (387)
T ss_pred             HHHHHhCCCcccCC-CcceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCC-CCCCCCEEEEEEeC------CH
Confidence            99999888876654 23566777775422  355555555 5789999954321110 11135789998652      36


Q ss_pred             HHHHHHHHHHHHHHH
Q 010008          455 KEFVAIADFIHEGVE  469 (520)
Q Consensus       455 ~d~~~la~~i~~~l~  469 (520)
                      +++++..+.|.++++
T Consensus       371 ~~l~~~l~rl~~~l~  385 (387)
T PRK08912        371 ATLDEAVERLAAARR  385 (387)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            778888877776654

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.93  E-value=4e-23  Score=213.36  Aligned_cols=327  Identities=13%  Similarity=0.093  Sum_probs=215.5

Q ss_pred             ceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCceeeecCChH-H
Q 010008           96 LELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGS-P  170 (520)
Q Consensus        96 i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~sGs-~  170 (520)
                      ++|..+++  ++++.+.+++.+....  ...|+.   ..|   ...+++...+++.+.+|++  ++   .+|.+|+|+ +
T Consensus         3 ~~~~~g~p~~~~~~~~~~~~~~~~~~--~~~Y~~---~~G---~~~lr~aia~~~~~~~g~~~~~~---~~Iiit~Gs~~   71 (350)
T TIGR03537         3 FDFGTGDPKEPTPPFIRKALIDAVPE--VSQYPS---ALG---TKALREAISGWFERRFGVKLDPD---AQVLPSAGSKE   71 (350)
T ss_pred             EeccCCCCCCCCCHHHHHHHHHHHhc--cCCCCC---CCC---CHHHHHHHHHHHHHHhCCCCCCC---CcEEEcCChHH
Confidence            34444443  3578888888876432  223433   112   3456666667777777854  42   156779998 8


Q ss_pred             HHHHHHHhhCCCC---CEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEE
Q 010008          171 ANFEVYTAILKPH---DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       171 A~~~~l~all~pG---D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklI  246 (520)
                      |+..++.++++||   |+|++++|.|.++..        .+...|.  +++.++++++ ++.+|++++++++.+ ++|+|
T Consensus        72 ai~~~~~~~~~~g~~~d~Vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~~~~-~~~~i  140 (350)
T TIGR03537        72 AIFHFPLVFIDPEEDRRRVIFGTPGYPVYER--------GALFAGG--EPTAVKLKKEDGFLLRLEKVEKSILE-ETKIV  140 (350)
T ss_pred             HHHHHHHHHcCCCCCCceEEEcCCCCcchHH--------HHHhcCC--EEEEcccCcccCCccCHHHHHHhhhh-ccEEE
Confidence            9999999999988   699999997765432        3345565  6777777643 456999999999887 89999


Q ss_pred             EEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cc--cEEEeccCccc--CCCCceEEE
Q 010008          247 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YC--DVVTTTTHKSL--RGPRGGMIF  316 (520)
Q Consensus       247 i~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~a--Div~~S~hK~l--~GprgG~I~  316 (520)
                      +++.++||+  ..+   +++|.++|+++|+++|+|+++. .+...+..++... ..  .+++.|++|++  +|.|.||++
T Consensus       141 ~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~  219 (350)
T TIGR03537       141 WINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYT-EIYFGEPPHSALEVGIENVLAFHSLSKRSGMTGYRSGFVA  219 (350)
T ss_pred             EEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEecccc-ccccCCCCCchhhcCcCCEEEEeecccccCCccccceeee
Confidence            999899997  566   8888899999999999999854 3332221111111 12  37788999986  788999999


Q ss_pred             eeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCe
Q 010008          317 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH  396 (520)
Q Consensus       317 ~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~  396 (520)
                      .++      ++.+++.....+...+.+...+.++. .++..  ....++.++++.++++.+.+.|.+.|+.+..+ ..+.
T Consensus       220 ~~~------~~~~~~~~~~~~~~~~~~~~~q~~~~-~~l~~--~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~~-~g~~  289 (350)
T TIGR03537       220 GDE------KLISFLRKLRANFGVASPDFVQAAAK-AAWSD--DNHVLERRKIFKRKRDLFIEFFNKVGLEYLYP-DATF  289 (350)
T ss_pred             cCH------HHHHHHHHHHHhhccCCCHHHHHHHH-HHhCC--cHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC-CeEE
Confidence            876      56666654332222333333233222 23321  22235667778888888999998888876544 2355


Q ss_pred             eEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          397 LVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       397 ~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      ++|+++. .+++...+.+.|.++||.+.    ||.. +....+++||++.      .+++++++..+.|.+
T Consensus       290 ~~~~~~~-~~~~~~~l~~~L~~~gv~v~----~g~~f~~~~~~~~Ri~~~------~~~~~~~~~l~~~~~  349 (350)
T TIGR03537       290 YLWVKVP-SGIDAKDYALRLLENGIVVA----PGENFGSGEEGYVRVALV------PTLEECEEALRLWER  349 (350)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHCCEEEc----CchhhCCCCCCEEEEEec------CCHHHHHHHHHHHhc
Confidence            6777775 34566778888888999994    4443 2223578999863      236788777766653

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.93  E-value=5.9e-23  Score=217.61  Aligned_cols=345  Identities=14%  Similarity=0.091  Sum_probs=221.3

Q ss_pred             ccceEecCCC------CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCC
Q 010008           94 KSLELIASEN------FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS  167 (520)
Q Consensus        94 ~~i~Liasen------~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~s  167 (520)
                      +.|+|..++.      .+++.+.+++...+......+|+..   .|   ..++++...+++.+.+|.+.+.  -+|.+++
T Consensus        53 ~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~---~G---~~~lr~aia~~~~~~~~~~~~~--~~v~it~  124 (430)
T PLN00145         53 PVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTC---VG---LLPARRAIAEYLSRDLPYELST--DDIYLTA  124 (430)
T ss_pred             CeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCC---cc---CHHHHHHHHHHHhhccCCCCCh--hhEEEeC
Confidence            5677776653      3578899999888765433345431   12   3455555556665555554221  2566788


Q ss_pred             hH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcE
Q 010008          168 GS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKL  245 (520)
Q Consensus       168 Gs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pkl  245 (520)
                      |+ +|+.+++.++++|||+|++++|.|..+..        ...+.|.  +++.+++.++ ++.+|++++++++++ ++++
T Consensus       125 G~~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~  193 (430)
T PLN00145        125 GCAQAIEIIMSVLAQPGANILLPRPGYPLYEA--------RAVFSGL--EVRHFDLLPERGWEVDLEGVEALADE-NTVA  193 (430)
T ss_pred             CHHHHHHHHHHHhcCCCCEEEEcCCCCccHHH--------HHHHcCC--EEEEeeCCcccCCcCCHHHHHHHhCc-CceE
Confidence            87 99999999999999999999997765321        2234455  5556655433 578999999999887 8999


Q ss_pred             EEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCC---Cc--ccEEEeccCcc--cCCCCce
Q 010008          246 IIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KY--CDVVTTTTHKS--LRGPRGG  313 (520)
Q Consensus       246 Ii~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~---~~--aDiv~~S~hK~--l~GprgG  313 (520)
                      |++++|+||+  ..+   +++|.++|+++|++||+|++ |..+++.+....++   ..  .-+++.|++|+  ++|+|.|
T Consensus       194 i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~-Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG  272 (430)
T PLN00145        194 MVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEV-YDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLG  272 (430)
T ss_pred             EEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEecc-chhhccCCCCccchhhhcccCcEEEEeccccccCCCCeeEE
Confidence            9999999997  555   77888889999999999998 45555543211222   11  12778999998  4899999


Q ss_pred             EEEeeCCCcch--hhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEec
Q 010008          314 MIFFKKDPVLG--VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVS  390 (520)
Q Consensus       314 ~I~~~~~~~~~--~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~  390 (520)
                      |++...+....  .++.+.+.....  ....++....+++..+|+.-....+++..+++.++++.+.+.|++. |+.+..
T Consensus       273 ~iv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~  350 (430)
T PLN00145        273 WIATCDPNGILKETKVVDSIRNYLN--ISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCITCPH  350 (430)
T ss_pred             EEEEecchhhhhhhHHHHHHHHHhc--ccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Confidence            99985321000  011222322211  1122222233333444543112335777888999999999999874 776542


Q ss_pred             CCCCCeeEEEEecCC---CC-CH-HHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHH
Q 010008          391 GGSDNHLVLVDLRPM---GI-DG-ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  465 (520)
Q Consensus       391 ~gt~~~~~~vd~~~~---g~-~~-~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~  465 (520)
                      ......++|+++...   +. +. +.+.++|++.||.+    .||.... .++++||+..      ..++++++..+.|.
T Consensus       351 ~P~ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v----~pG~~fg-~~~~lRis~~------~~~~~l~~al~rl~  419 (430)
T PLN00145        351 KPEGSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVV----LPGSALG-MKNWLRITFA------IDPPSLEDGLERLK  419 (430)
T ss_pred             CCCeeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEE----eCccccC-CCCeEEEEeC------CCHHHHHHHHHHHH
Confidence            223456778776421   22 33 45667888999999    5655311 2579999864      24677888888887


Q ss_pred             HHHHHH
Q 010008          466 EGVEIT  471 (520)
Q Consensus       466 ~~l~~~  471 (520)
                      +.+...
T Consensus       420 ~~~~~~  425 (430)
T PLN00145        420 SFCLRH  425 (430)
T ss_pred             HHHHHh
Confidence            777543

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=4.4e-23  Score=213.20  Aligned_cols=318  Identities=15%  Similarity=0.143  Sum_probs=217.1

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      ..+.|..+++.  +|+.+.+++...+......+|+.      .. ...++    +.++++++++++    +|.+++|+ +
T Consensus        23 ~~~~l~~~~~~~~~p~~~~~a~~~~~~~~~~~~y~~------~~-~~~lr----~~ia~~~~~~~~----~i~it~G~~~   87 (351)
T PRK14807         23 YKYKMDANETPFELPEEVIKNIQEIVKSSQVNIYPD------PT-AEKLR----EELARYCSVVPT----NIFVGNGSDE   87 (351)
T ss_pred             ceeEccCCCCCCCCCHHHHHHHHHHhhcCcccCCCC------cc-HHHHH----HHHHHHhCCCcc----cEEEecCHHH
Confidence            34677777764  68999999887664322223332      11 23343    567778899876    56678998 7


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  250 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~  250 (520)
                      ++..++.++++|||+|++++|.|.++..        .....|.  +++.++++ +++.+|++++++.++..++|+|++++
T Consensus        88 ~l~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~~~~~~~k~v~l~~  156 (351)
T PRK14807         88 IIHLIMLAFINKGDVVIYPHPSFAMYSV--------YSKIAGA--VEIPVKLK-EDYTYDVGSFIKVIEKYQPKLVFLCN  156 (351)
T ss_pred             HHHHHHHHhcCCCCEEEEeCCChHHHHH--------HHHHcCC--eEEEeecC-CCCCCCHHHHHHHhhccCCCEEEEeC
Confidence            8888999999999999999987753311        1233454  66677676 45789999999999766899999999


Q ss_pred             CCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-c-ccEEEeccCccc--CCCCceEEEeeCCCcch
Q 010008          251 SAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-Y-CDVVTTTTHKSL--RGPRGGMIFFKKDPVLG  324 (520)
Q Consensus       251 s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~-aDiv~~S~hK~l--~GprgG~I~~~~~~~~~  324 (520)
                      ++||+  ..+.+++.++|++++.++++|+++. ++. .......+. . -.+++.|++|++  +|.|.||+++++     
T Consensus       157 p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~-~~~-~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~-----  229 (351)
T PRK14807        157 PNNPTGSVIEREDIIKIIEKSRGIVVVDEAYF-EFY-GNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANE-----  229 (351)
T ss_pred             CCCCCCCCCCHHHHHHHHHhCCCEEEEeCcch-hhc-ccchHHHhhhCCCEEEEecchHhcccchhceeeeecCH-----
Confidence            99987  7899999999999899999999963 332 111111111 1 237889999986  789999999977     


Q ss_pred             hhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecCCCCCeeEEEEec
Q 010008          325 VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLVLVDLR  403 (520)
Q Consensus       325 ~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~gt~~~~~~vd~~  403 (520)
                       ++.+.+.....+.  ..+...+.+ +..+++.   ..+++..+.+.++++.+.+.|.+ .|+.+..+  ...++|+++.
T Consensus       230 -~~~~~~~~~~~~~--~~~~~~q~~-~~~~l~~---~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~~~--~~~~~~i~~~  300 (351)
T PRK14807        230 -NILKYLNLVKSPY--NINSLSQVI-ALKVLRT---GVLKERVNYILNERERLIKELSKIPGIKVYPS--KTNFILVKFK  300 (351)
T ss_pred             -HHHHHHHHccCCC--CcCHHHHHH-HHHHHhH---HHHHHHHHHHHHHHHHHHHHHHhCCCcEECcC--CccEEEEEcC
Confidence             6777665433222  122232332 2223432   34566677788888889999977 48776543  2445677664


Q ss_pred             CCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          404 PMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       404 ~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                          +.+++.+.|.++||.+..    +......++++||++.       ..++++++.+.|++++
T Consensus       301 ----~~~~~~~~l~~~gV~v~~----~~~~~~~~~~iRis~~-------~~~~~~~l~~~l~~~~  350 (351)
T PRK14807        301 ----DADYVYQGLLERGILVRD----FSKVEGLEGALRITVS-------SCEANDYLINGLKELL  350 (351)
T ss_pred             ----CHHHHHHHHHHCCEEEEE----CCCCCCCCCeEEEEcC-------CHHHHHHHHHHHHHhh
Confidence                457788888889999953    2211123578999864       2688899998887653

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.93  E-value=3.9e-23  Score=213.45  Aligned_cols=327  Identities=20%  Similarity=0.193  Sum_probs=217.3

Q ss_pred             ccceEecCCC---CChHHHHHHHhhhhhccCCCCCCCCCCCCcc-hhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH
Q 010008           94 KSLELIASEN---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGN-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS  169 (520)
Q Consensus        94 ~~i~Liasen---~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~-~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs  169 (520)
                      +.|+|..+++   ..++.|++++...+. +|..++++.++..|. +..++++    +.+++++|.+.     +|.+++|+
T Consensus        17 ~~id~~~~~~~g~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~g~~~~~~~l~----~~la~~~~~~~-----~i~~~~G~   86 (360)
T TIGR00858        17 RLLNFSSNDYLGLASHPEVIQAAQQGAE-QYGAGSTASRLVSGNSPLHEELE----EELAEWKGTEA-----ALLFSSGY   86 (360)
T ss_pred             eEEecccCCcccCCCCHHHHHHHHHHHH-hcCCCCCCcCcccCCcHHHHHHH----HHHHHHhCCCC-----EEEECchH
Confidence            4577777643   245899999988774 454555543333332 3334444    67788888542     56778999


Q ss_pred             HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc---CCcEE
Q 010008          170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLI  246 (520)
Q Consensus       170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~---~pklI  246 (520)
                      +++..++.++++|||+|++.++.|.....        .+...|.  +++.++      .+|++++++.++..   ++++|
T Consensus        87 ~~~~~~l~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~--~~~~~~------~~d~~~l~~~~~~~~~~~~~~v  150 (360)
T TIGR00858        87 LANVGVISALVGKGDLILSDALNHASLID--------GCRLSGA--RVRRYR------HNDVEHLERLLEKNRGERRKLI  150 (360)
T ss_pred             HHHHHHHHHhCCCCCEEEEEccccHHHHH--------HHHhcCC--ceEEec------CCCHHHHHHHHHHcccCCCeEE
Confidence            88888888889999999999887654421        2233444  333332      36899999988753   46788


Q ss_pred             EEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhccccccccc---C-CCC--CcccEEEeccCcccCCCCceEEEee
Q 010008          247 IAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV---A-DPF--KYCDVVTTTTHKSLRGPRGGMIFFK  318 (520)
Q Consensus       247 i~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~---~-~p~--~~aDiv~~S~hK~l~GprgG~I~~~  318 (520)
                      +++.+++++  ..|+++|.++|+++|+++|+|++|..|.......   . ..+  ...+|+++|+||++. ++|||++++
T Consensus       151 ~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~-~~gG~~~~~  229 (360)
T TIGR00858       151 VTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALG-SYGAYVAGS  229 (360)
T ss_pred             EEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhh-ccCcEEEcC
Confidence            877665554  6799999999999999999999987664422100   0 111  146799999999984 578999987


Q ss_pred             CCCcchhhHHHhhcccCCCC-CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCee
Q 010008          319 KDPVLGVELESAINNAVFPG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL  397 (520)
Q Consensus       319 ~~~~~~~~l~~~i~~~~~p~-~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~  397 (520)
                      +      ++.+.+.....+. ..++++...+++...+++...  ..+...+++.++++.+.+.|.+.|+++..+  ...+
T Consensus       230 ~------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~  299 (360)
T TIGR00858       230 Q------ALIDYLINRARTLIFSTALPPAVAAAALAALELIQ--EEPWRREKLLALIARLRAGLEALGFTLMPS--CTPI  299 (360)
T ss_pred             H------HHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHHHcCCccCCC--CCCE
Confidence            7      6666654332221 223344455555555676443  224567889999999999999888776543  2346


Q ss_pred             EEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHH
Q 010008          398 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  464 (520)
Q Consensus       398 ~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i  464 (520)
                      +++.+.. ..+..++.+.|.++||.+.....++.  +....++||+++..++    ++|++++++.|
T Consensus       300 ~~~~~~~-~~~~~~~~~~l~~~gI~v~~~~~~~~--~~~~~~iRis~~~~~~----~~~i~~~l~~l  359 (360)
T TIGR00858       300 VPVIIGD-NASALALAEELQQQGIFVGAIRPPTV--PAGTSRLRLTLSAAHT----PGDIDRLAEAL  359 (360)
T ss_pred             EEEEeCC-HHHHHHHHHHHHHCCeeEeeeCCCCC--CCCCceEEEEEcCCCC----HHHHHHHHHhh
Confidence            6666632 23456788888899999964322221  1234589999876543    79999998876

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.93  E-value=9.8e-23  Score=214.48  Aligned_cols=340  Identities=16%  Similarity=0.135  Sum_probs=216.7

Q ss_pred             ccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      +.++|..++.  .+++.+++++...+.+....+|+.   ..|   ...+++...+++.+.+|.+.+. .-+|.+|+|+ +
T Consensus        34 ~~~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G---~~~lR~~ia~~l~~~~~~~~~~-~~~I~it~G~~~  106 (403)
T PRK08636         34 DIIDFSMGNPDGPTPQHIIDKLCESAQKPKTHGYSV---SKG---IYKLRLAICNWYKRKYNVDLDP-ETEVVATMGSKE  106 (403)
T ss_pred             CEEEcCCcCCCCCCCHHHHHHHHHHhcCCccCCCCC---CCC---CHHHHHHHHHHHHHHhCCCCCC-CCeEEECCChHH
Confidence            4577765442  256667777665543322234443   122   2355556667888888864321 0147779998 8


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC-CCCCCCHHH----HHHHhhh--cCC
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDM----LEKTAIL--FRP  243 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-~~~~iD~d~----le~~i~~--~~p  243 (520)
                      |+..++.++++|||.|++.+|.|.++..        .+...|.  ++++++++. +++.+|++.    ++++++.  .++
T Consensus       107 al~~~~~~l~~~gd~Vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~  176 (403)
T PRK08636        107 GYVHLVQAITNPGDVAIVPDPAYPIHSQ--------AFILAGG--NVHKMPLEYNEDFELDEDQFFENLEKALRESSPKP  176 (403)
T ss_pred             HHHHHHHHhCCCCCEEEEcCCCCcchHH--------HHHhcCC--EEEEEeccccccCccChhhhhhHHHHHHhhccCCc
Confidence            9999999999999999999998866532        2334565  666666642 346888875    4555543  267


Q ss_pred             cEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCC---C-ccc--EEEeccCccc--CCC
Q 010008          244 KLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YCD--VVTTTTHKSL--RGP  310 (520)
Q Consensus       244 klIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~---~-~aD--iv~~S~hK~l--~Gp  310 (520)
                      ++|+++.|+||+  ..   .+++|.++|+++++++|+|++ |..+.+.+....++   + ..|  +++.|++|++  +|.
T Consensus       177 ~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~-Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl  255 (403)
T PRK08636        177 KYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIA-YADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGW  255 (403)
T ss_pred             eEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEecc-chhhccCCCCCCChhcCCCccccEEEEEecccccCCccc
Confidence            899998889997  44   467888889999999999998 44555433211111   1 223  4578999987  899


Q ss_pred             CceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEec
Q 010008          311 RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVS  390 (520)
Q Consensus       311 rgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~  390 (520)
                      |.||++.++      ++.+.+.........+.+...+.++. .++... ....++..+.+.++++.+.+.|.+.|+.+..
T Consensus       256 RiG~iv~~~------~li~~~~~~~~~~~~~~~~~~q~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  327 (403)
T PRK08636        256 RVGFVVGNK------KLVGALKKIKSWLDYGMFTPIQVAAT-IALDGD-QSCVEEIRETYRKRRDVLIESFANAGWELQK  327 (403)
T ss_pred             eeeeeeCCH------HHHHHHHHHHHHhcccCChHHHHHHH-HHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHCCCcccC
Confidence            999999887      66665544322111233333344332 234321 1223566777788888899999888877654


Q ss_pred             CCCCCeeEEEEecCC--CCCHHHHH-HHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          391 GGSDNHLVLVDLRPM--GIDGARVE-KILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       391 ~gt~~~~~~vd~~~~--g~~~~~~~-~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      + ..+.++|+++.+.  +++..++. +.+++.||.+    .||.. +....+++||++.      ..++++++..+.|.+
T Consensus       328 p-~~g~~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v----~pg~~f~~~~~~~iRi~~~------~~~~~l~~~~~rl~~  396 (403)
T PRK08636        328 P-RASMFVWAKIPEPARHLGSLEFSKQLLTEAKVAV----SPGIGFGEYGDEYVRIALI------ENENRIRQAARNIKK  396 (403)
T ss_pred             C-CcceEEEEECCCccCCCCHHHHHHHHHHhCCEEE----ecchhhCcCCCCeEEEEec------CCHHHHHHHHHHHHH
Confidence            3 2356778887532  23445554 5577899999    45543 2223578999874      246888888888877


Q ss_pred             HHHH
Q 010008          467 GVEI  470 (520)
Q Consensus       467 ~l~~  470 (520)
                      +++.
T Consensus       397 ~l~~  400 (403)
T PRK08636        397 FLKE  400 (403)
T ss_pred             HHHh
Confidence            7753

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.92  E-value=7.2e-23  Score=212.34  Aligned_cols=324  Identities=14%  Similarity=0.111  Sum_probs=210.3

Q ss_pred             eEecCCCCChHHHHHHHhhhhhccCCCCCCCC-CC---CCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HH
Q 010008           97 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGK-RY---YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PA  171 (520)
Q Consensus        97 ~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~-ry---y~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A  171 (520)
                      +-|.+..++.+.+++++..+..+ +  +.|.. ..   ..+.+.+.+++    +.+++++|++      ++.+++|+ ++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~l~----~~la~~~g~~------~i~~~~g~t~a   71 (361)
T cd06452           5 DPIQRGGRLTPEARKALIEWGDG-Y--SVCDFCRGRLDEIEKPPIKDFH----HDLAEFLGMD------EARVTPGAREG   71 (361)
T ss_pred             ChhhcCCCCCHHHHHHHHHHhcc-c--CCccccccccccccCchHHHHH----HHHHHHcCCc------eEEEeCCHHHH
Confidence            33456678899999999876521 1  22211 00   11223445554    6788999993      23345655 89


Q ss_pred             HHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhh------cCCc
Q 010008          172 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAIL------FRPK  244 (520)
Q Consensus       172 ~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~------~~pk  244 (520)
                      +.+++.++++|||+|++.++.|.+.+.        .+...|.  +++.++++.+ ++.+|++++++++++      .+++
T Consensus        72 l~~~l~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~  141 (361)
T cd06452          72 KFAVMHSLCEKGDWVVVDGLAHYTSYV--------AAERAGL--NVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPA  141 (361)
T ss_pred             HHHHHHHhcCCCCEEEEcCCcchHHHH--------HHHhcCC--EEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCce
Confidence            999999999999999998876644321        2334455  5666666543 358999999998863      2689


Q ss_pred             EEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEEEeccCcccCC-CCceEEEeeCC
Q 010008          245 LIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKD  320 (520)
Q Consensus       245 lIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S~hK~l~G-prgG~I~~~~~  320 (520)
                      +|++++++||+  ..|+++|.++|+++|+++++|+||+.|.....    ... ++|++++|+||++.+ +++|++++++ 
T Consensus       142 lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~----~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~-  216 (361)
T cd06452         142 LALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVS----GKELGADFIVGSGHKSMAASAPIGVLATTE-  216 (361)
T ss_pred             EEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcCCC----HHHcCCCEEEecCCccccCCCCeEEEEECH-
Confidence            99999888775  78999999999999999999999886643211    111 589999999999854 4669999987 


Q ss_pred             CcchhhHHHhhcccCCC-------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCC
Q 010008          321 PVLGVELESAINNAVFP-------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGG  392 (520)
Q Consensus       321 ~~~~~~l~~~i~~~~~p-------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~g  392 (520)
                           ++.+++.+...+       ...+++....++++..+++.+.  +..+..++..++++++.+.|.+. |++++...
T Consensus       217 -----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~l~g~~v~~~~  289 (361)
T cd06452         217 -----EWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHVK--ERVKRWDEEVEKARWFVAELEKIEGIKQLGEK  289 (361)
T ss_pred             -----HHHHHHhccccccccceeeeeccccCchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCeEEECCC
Confidence                 566665432211       1122322223334444454432  12223344456678899999886 99887421


Q ss_pred             -CCCeeEEEEecC-------CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHH
Q 010008          393 -SDNHLVLVDLRP-------MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  464 (520)
Q Consensus       393 -t~~~~~~vd~~~-------~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i  464 (520)
                       ...+++.++...       ...++.++.+.|.+.||.+..   ++     ....+|+++.     |.+++|++.++++|
T Consensus       290 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~---~~-----~~~~~ri~~~-----g~~~e~~~~l~~al  356 (361)
T cd06452         290 PKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKRGIHGIK---PG-----LTRYFKLSTY-----GLTWEQVEYVVDAF  356 (361)
T ss_pred             CCCCceEEEEcCCcchhhhhccccchhHHHHHHHcCceEEc---CC-----CceEEEEEec-----CCCHHHHHHHHHHH
Confidence             233455555431       011234688888888999631   22     2457898763     45689999999999


Q ss_pred             HHHH
Q 010008          465 HEGV  468 (520)
Q Consensus       465 ~~~l  468 (520)
                      +++.
T Consensus       357 ~~~~  360 (361)
T cd06452         357 KEIA  360 (361)
T ss_pred             HHHh
Confidence            8653

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.92  E-value=3.2e-23  Score=216.30  Aligned_cols=323  Identities=15%  Similarity=0.169  Sum_probs=211.5

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-CCC
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKP  182 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al-l~p  182 (520)
                      ..++...+++...+...+.        +.| +.+.++|    +++++++|++.     .|.++||++|+.+++.++ ++|
T Consensus        11 ~~~~~e~~~~~~~l~~~~~--------~~g-~~~~~le----~~la~~~g~~~-----~v~~~sgt~al~lal~al~~~~   72 (379)
T PRK11658         11 AMGDEELAAVKEVLRSGWI--------TTG-PKNQALE----QAFCQLTGNQH-----AIAVSSATAGMHITLMALGIGP   72 (379)
T ss_pred             CCCHHHHHHHHHHHHcCCc--------cCC-HhHHHHH----HHHHHHhCCCe-----EEEECCHHHHHHHHHHHcCCCC
Confidence            3455567777666654331        112 3467777    67889999975     355688899999999999 899


Q ss_pred             CCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHH
Q 010008          183 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRM  262 (520)
Q Consensus       183 GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i  262 (520)
                      ||+|++++++|.+...        .+...|.  +++.++++++++.+|++++++++++ ++|+|+..++ ++...|+++|
T Consensus        73 Gd~Viv~~~~~~~~~~--------~~~~~G~--~~v~vd~~~~~~~~d~~~l~~~i~~-~tkav~~~~~-~G~~~d~~~i  140 (379)
T PRK11658         73 GDEVITPSLTWVSTLN--------MIVLLGA--TPVMVDVDRDTLMVTPEAIEAAITP-RTKAIIPVHY-AGAPADLDAI  140 (379)
T ss_pred             CCEEEECCCcHHHHHH--------HHHHcCC--EEEEEecCCCcCCcCHHHHHHhccc-CCeEEEEeCC-CCCcCCHHHH
Confidence            9999999988765421        2334565  7777778766778999999999987 8999886543 4457899999


Q ss_pred             HHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCceEEEeeCCCcchhhHHHhhcccCCCCC---
Q 010008          263 RQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGL---  339 (520)
Q Consensus       263 ~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~---  339 (520)
                      .++|+++|+++|+|++|..|....+.....+ +.++++++.+|.+++++||+++++++     ++.+++......|.   
T Consensus       141 ~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~-g~~~~Sf~~~K~l~~g~GG~v~~~~~-----~~~~~~~~~~~~G~~~~  214 (379)
T PRK11658        141 RAIGERYGIPVIEDAAHAVGTYYKGRHIGAR-GTAIFSFHAIKNITCAEGGLVVTDDD-----ELADRLRSLKFHGLGVD  214 (379)
T ss_pred             HHHHHHcCCeEEEECCCccCCeECCeecCCC-CCEEEeCCCCCcCcccCceEEEECCH-----HHHHHHHHHHHcCCCcc
Confidence            9999999999999999998877654322111 34677777789999999999998764     55544432111110   


Q ss_pred             -----------------CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEe-cCCC---CC-ee
Q 010008          340 -----------------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLV-SGGS---DN-HL  397 (520)
Q Consensus       340 -----------------~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~-~~gt---~~-~~  397 (520)
                                       .|. + ..+..+.+|+...+...+++..++.+++++.+.+.|.+.++..+ .+..   .+ ++
T Consensus       215 ~~~~~~~~~~~~~~~~~~G~-n-~~~~~l~AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~  292 (379)
T PRK11658        215 AFDRQTQGRAPQAEVLTPGY-K-YNLADINAAIALVQLAKLEALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHL  292 (379)
T ss_pred             hhhhhcccCCCcceeecccc-c-cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEE
Confidence                             011 1 11222333443333345667777778888888888876543322 2111   11 33


Q ss_pred             EEEEecC--CCCCHHHHHHHHhhcCeEEcCCCCCCCCC-CCC---------------CCEEEEccCCccccCCCHHHHHH
Q 010008          398 VLVDLRP--MGIDGARVEKILDMASITLNKNSVPGDKS-ALV---------------PGGIRIGSPAMTTRGFSEKEFVA  459 (520)
Q Consensus       398 ~~vd~~~--~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~-~~~---------------~~giRig~~~~tt~g~~~~d~~~  459 (520)
                      +.+.+..  .+++.+++.+.|.+.||.+...+.|.+.. .+.               ...|.+  |..  .+++++|+++
T Consensus       293 ~~~~~~~~~~~~~r~~~~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~l--P~~--~~l~~~~~~~  368 (379)
T PRK11658        293 FIIRVDEERCGISRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSL--PLF--PDMTDADVDR  368 (379)
T ss_pred             EEEEECCccccCCHHHHHHHHHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEc--cCC--CCCCHHHHHH
Confidence            3333322  24677889999999999877554444321 110               012222  211  4688999999


Q ss_pred             HHHHHHHHH
Q 010008          460 IADFIHEGV  468 (520)
Q Consensus       460 la~~i~~~l  468 (520)
                      +++.|++++
T Consensus       369 i~~~i~~~~  377 (379)
T PRK11658        369 VITALQQIA  377 (379)
T ss_pred             HHHHHHHHH
Confidence            999998864

>PLN02656 tyrosine transaminase

Probab=99.92  E-value=3.6e-23  Score=218.13  Aligned_cols=343  Identities=16%  Similarity=0.080  Sum_probs=221.6

Q ss_pred             hccceEecCCC------CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceeee
Q 010008           93 FKSLELIASEN------FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQ  164 (520)
Q Consensus        93 ~~~i~Liasen------~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V~  164 (520)
                      .+.|+|..+++      .+|+.+++++.+.+......+|..   ..|   ..++++...+++.+.+|.  +++    +|.
T Consensus        31 ~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G---~~~lr~~ia~~~~~~~g~~~~~~----~i~  100 (409)
T PLN02656         31 KRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAP---TVG---LPQARRAIAEYLSRDLPYKLSLD----DVF  100 (409)
T ss_pred             CeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCC---CCC---CHHHHHHHHHHHHHhcCCCCCcc----cEE
Confidence            46788887765      357899999988776543334422   112   234554555666666664  343    566


Q ss_pred             cCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcC
Q 010008          165 PLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFR  242 (520)
Q Consensus       165 ~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~  242 (520)
                      +++|+ +|+..++.++++|||+|++++|.|..+.        ......|.  +++.++++++ ++.+|++++++++++ +
T Consensus       101 ~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~--------~~~~~~g~--~~~~i~~~~~~~~~~d~~~l~~~~~~-~  169 (409)
T PLN02656        101 ITSGCTQAIDVALSMLARPGANILLPRPGFPIYE--------LCAAFRHL--EVRYVDLLPEKGWEVDLDAVEALADQ-N  169 (409)
T ss_pred             EeCChHHHHHHHHHHHhCCCCeEEEeCCCCCcHH--------HHHHHcCC--EEEEEeCCCcCCCCCCHHHHHHHhcc-C
Confidence            68887 8999999999999999999999875431        12233454  5666666533 467999999998877 7


Q ss_pred             CcEEEEcCCCCCC--C---CCHHHHHHHHHHhCCEEEEechhhcccccccccCCCC---Cc--ccEEEeccCccc--CCC
Q 010008          243 PKLIIAGASAYPR--D---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KY--CDVVTTTTHKSL--RGP  310 (520)
Q Consensus       243 pklIi~~~s~~p~--~---~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~---~~--aDiv~~S~hK~l--~Gp  310 (520)
                      +++|++++|+||+  .   .++++|.++|+++|++||+|++ |.++.+.+....++   ..  .-|++.|++|++  +|+
T Consensus       170 ~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~-y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGl  248 (409)
T PLN02656        170 TVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEV-YGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGW  248 (409)
T ss_pred             ceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehh-hhhcccCCCCcccHHHhcccCcEEEEcccchhccCcce
Confidence            8999998899987  3   2688899999999999999999 45665544221222   11  126789999984  899


Q ss_pred             CceEEEeeCCCcc--hhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCE
Q 010008          311 RGGMIFFKKDPVL--GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYK  387 (520)
Q Consensus       311 rgG~I~~~~~~~~--~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~  387 (520)
                      |.||++++++...  ..++.+++...... . ++++....+++..+|+......+++..+++.++++.+.+.|++. ++.
T Consensus       249 RiG~~i~~~~~~~~~~~~~~~~~~~~~~~-~-~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~  326 (409)
T PLN02656        249 RLGWFVTTDPSGSFRDPKIVERIKKYFDI-L-GGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPCIT  326 (409)
T ss_pred             eEEEEEEeCcccccccHHHHHHHHHHHhh-h-cCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Confidence            9999998531000  01455555433221 1 22233333344445543212235677788888899999999875 333


Q ss_pred             EecCCCCCeeEEEEecC---CCC-CH-HHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHH
Q 010008          388 LVSGGSDNHLVLVDLRP---MGI-DG-ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIAD  462 (520)
Q Consensus       388 v~~~gt~~~~~~vd~~~---~g~-~~-~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~  462 (520)
                      .......+.++|+++..   .+. +. +.+.++|.+.||.+    .||... ..++++||++.      .+++++++..+
T Consensus       327 ~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v----~pg~~f-g~~~~iRi~~~------~~~e~l~eal~  395 (409)
T PLN02656        327 CPHKPEGSMAVMVKLNLSLLEDISDDIDFCFKLAREESVII----LPGTAV-GLKNWLRITFA------ADPSSLEEALG  395 (409)
T ss_pred             CCcCCCeEEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEE----ecchhc-CCCCeEEEEeC------CCHHHHHHHHH
Confidence            22222234667877742   112 23 34678889999999    455431 13578999865      24788888888


Q ss_pred             HHHHHHHH
Q 010008          463 FIHEGVEI  470 (520)
Q Consensus       463 ~i~~~l~~  470 (520)
                      .|++++..
T Consensus       396 rl~~~~~~  403 (409)
T PLN02656        396 RIKSFYLR  403 (409)
T ss_pred             HHHHHHHH
Confidence            88877653

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.92  E-value=1e-23  Score=213.50  Aligned_cols=345  Identities=19%  Similarity=0.204  Sum_probs=222.7

Q ss_pred             ccceEec-CCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HH
Q 010008           94 KSLELIA-SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PA  171 (520)
Q Consensus        94 ~~i~Lia-sen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A  171 (520)
                      +.+.|.. +..++++.|++||..++.+.|  |.|..++| |++..+.+| .+|+.+++++|+++.+    |..|+|+ ++
T Consensus        43 ~~vyld~~at~p~~~~Vldam~~~~~~~~--~nPh~~~y-~w~~~~~~E-~aR~~VAklInAd~~d----IiFts~ATEs  114 (428)
T KOG1549|consen   43 RPVYLDNQATGPMDPRVLDAMLPYLLEYL--GNPHSRSY-GWKAEDAVE-AAREQVAKLINADPSD----IVFTSGATES  114 (428)
T ss_pred             ccEEEecCcCCCCCHHHHHHHHHHHHHhh--cCCCcccc-chhhhHHHH-HHHHHHHHHhCCCCCc----EEEeCCchHH
Confidence            5567764 457899999999999988776  77887733 566667787 6899999999999974    4457766 99


Q ss_pred             HHHHHHhh-CCCCC----EEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEE
Q 010008          172 NFEVYTAI-LKPHD----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       172 ~~~~l~al-l~pGD----~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklI  246 (520)
                      |.+++.++ ..++|    +|++++.+|..++-..       ..+...++++..+|++ +++.+|.+.+++.+++ +|+++
T Consensus       115 ~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~-------~~l~~~g~~Vt~lpv~-~~~~~d~~~~~~~i~~-~T~lv  185 (428)
T KOG1549|consen  115 NNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSC-------RALQEEGLEVTYLPVE-DSGLVDISKLREAIRS-KTRLV  185 (428)
T ss_pred             HHHHHHHhhccccccccceEEEecccCcchhHHH-------HHHHhcCeEEEEeccC-ccccccHHHHHHhcCC-CceEE
Confidence            99999987 56788    9999998887664221       1122223688888887 7899999999999999 99999


Q ss_pred             EEcCCC-CCC-CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcc
Q 010008          247 IAGASA-YPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVL  323 (520)
Q Consensus       247 i~~~s~-~p~-~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~  323 (520)
                      .+..-+ -++ .+|+++|.++|++.|+.+++|+||..|.+..++...   ++|+++++.|||+ ||+| |++++++.   
T Consensus       186 ~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~vDV~el---n~D~~s~s~HK~y-gp~~iGaLYvr~~---  258 (428)
T KOG1549|consen  186 SIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKIPVDVQEL---NADFLSISAHKIY-GPPGIGALYVRRK---  258 (428)
T ss_pred             EEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcCCccccHHHc---Cchheeeeccccc-CCCcceEEEEccC---
Confidence            888543 344 889999999999999999999999999987766544   4899999999986 6665 99999872   


Q ss_pred             hhhHHHhhc--ccCCCC------CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH--CCCEEecCCC
Q 010008          324 GVELESAIN--NAVFPG------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE--LGYKLVSGGS  393 (520)
Q Consensus       324 ~~~l~~~i~--~~~~p~------~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~--~G~~v~~~gt  393 (520)
                         . .++.  .....|      ..|+.......++..|.+.+.. +..-....+.+....+...+..  ....+...+.
T Consensus       259 ---~-~~~~~~p~~~GGgq~r~~rsGT~~~~~~~~~gsA~e~~~~-~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~G~~~  333 (428)
T KOG1549|consen  259 ---R-PRLRVEPPLSGGGQERGLRSGTVATPLAVGLGSAAEFVNK-EMAYDEAIIKRLSEKLLMGIGQSLPEVTLNGSGK  333 (428)
T ss_pred             ---C-CcccccCcccCCccccccccCCcCchhhhhhHHHHHHHHh-hcchhHHHHHHHHHHHHHHHhhhCchhhccCCcc
Confidence               1 1111  111111      1455566666666666665432 1111122222233333333322  1222222111


Q ss_pred             C--CeeEEEEec-CCCCCH-HHHHHHHhhcCeEEcCCC-CC-------CCCCCCCCCEEEEccCCccccCCCHHHHHHHH
Q 010008          394 D--NHLVLVDLR-PMGIDG-ARVEKILDMASITLNKNS-VP-------GDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA  461 (520)
Q Consensus       394 ~--~~~~~vd~~-~~g~~~-~~~~~~L~~~gI~v~~~~-~P-------g~~~~~~~~giRig~~~~tt~g~~~~d~~~la  461 (520)
                      .  ....-+.+. ..+... ......-...|..+-.+. -|       |.......++||||...+|+    ++|+++++
T Consensus       334 ~~~~~~~~~~~~~~~g~~~~~~~~~~~l~s~~a~~~~~~epsy~l~~~G~~~~~~~~~iRis~G~y~t----~~di~~~~  409 (428)
T KOG1549|consen  334 SRYPGLVSLSFPYVEGESLLMDLKDVALSSGSACTSASLEPSYVLRAIGVDEDLAHSSIRISIGRYTT----EEDIDYLV  409 (428)
T ss_pred             cccccceeeecccccCcchhhhhhhhhhcccchhhcCCCCcchhhhhcCcchhhhcceeEEeeeeeCc----HHHHHHHH
Confidence            1  111222222 112211 111111112232222221 11       11123346899999998886    89999999


Q ss_pred             HHHHHHHHHH
Q 010008          462 DFIHEGVEIT  471 (520)
Q Consensus       462 ~~i~~~l~~~  471 (520)
                      +.|.+.++..
T Consensus       410 ~~i~~~v~~~  419 (428)
T KOG1549|consen  410 DAIKKLVSLL  419 (428)
T ss_pred             HHHHHHHHhc
Confidence            9999888754

>PRK08363 alanine aminotransferase; Validated

Probab=99.92  E-value=1.2e-22  Score=213.58  Aligned_cols=334  Identities=16%  Similarity=0.106  Sum_probs=214.5

Q ss_pred             ccceEecCCC-----CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceeeecC
Q 010008           94 KSLELIASEN-----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPL  166 (520)
Q Consensus        94 ~~i~Liasen-----~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V~~~  166 (520)
                      +.|+|..++.     .+++.+.+++.+.+.+.. ..|      +..+...++++...+++.+.+|.  +++    +|.++
T Consensus        31 ~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~~-~~Y------~~~~g~~~lr~~ia~~~~~~~g~~~~~~----~i~it   99 (398)
T PRK08363         31 KVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEGH-NYY------GPSEGLPELREAIVKREKRKNGVDITPD----DVRVT   99 (398)
T ss_pred             CeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcCC-CCC------CCCCCcHHHHHHHHHHHHHhcCCCCChh----hEEEe
Confidence            5688887664     368889999987765431 122      21222346665555666666664  454    56668


Q ss_pred             ChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEc-ccCCCCCCCCHHHHHHHhhhcCCc
Q 010008          167 SGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY-RLDESTGLVDYDMLEKTAILFRPK  244 (520)
Q Consensus       167 sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~-~~d~~~~~iD~d~le~~i~~~~pk  244 (520)
                      +|+ +|+..++.++++|||+|++++|.|.++..        .+...|.  .++.+ +++++++.+|.+++++.+++ +++
T Consensus       100 ~G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~v~~~~~~~~~~~~d~~~l~~~~~~-~~~  168 (398)
T PRK08363        100 AAVTEALQLIFGALLDPGDEILIPGPSYPPYTG--------LVKFYGG--VPVEYRTIEEEGWQPDIDDIRKKITE-KTK  168 (398)
T ss_pred             CCHHHHHHHHHHHhCCCCCEEEEcCCCCcchHH--------HHHHcCC--EEEEeccccccCCcCCHHHHHhhCCc-ceE
Confidence            886 89999999999999999999998765532        2233444  55555 45545567999999999877 889


Q ss_pred             EEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCC--CCcc--cEEEeccCccc--CCCCce
Q 010008          245 LIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP--FKYC--DVVTTTTHKSL--RGPRGG  313 (520)
Q Consensus       245 lIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p--~~~a--Div~~S~hK~l--~GprgG  313 (520)
                      +|++++++||+  ..+   +++|.++|+++|+++|+|+++. .+.+.+...+.  +...  -+++.|++|++  +|.|.|
T Consensus       169 ~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG  247 (398)
T PRK08363        169 AIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYD-LMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLG  247 (398)
T ss_pred             EEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhh-hhccCCcccCHHHcCcCCcEEEEecchhccCCccceEE
Confidence            99999899987  444   8889999999999999999954 44433322111  1112  26678999984  788999


Q ss_pred             EEEe--eCCCcchhhHHHhhcccCC---CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCE
Q 010008          314 MIFF--KKDPVLGVELESAINNAVF---PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYK  387 (520)
Q Consensus       314 ~I~~--~~~~~~~~~l~~~i~~~~~---p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~  387 (520)
                      |+++  ++      ++.+.+.....   ....+.....+. +.+.+|.. .....++..+++.++++.+.+.|.+. |+.
T Consensus       248 ~~~~~~~~------~~~~~l~~~~~~~~~~~~~~s~~~q~-~~~~~l~~-~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~  319 (398)
T PRK08363        248 YIYFVDPE------GKLAEVREAIDKLARIRLCPNTPAQF-AAIAGLTG-PMDYLEEYMKKLKERRDYIYKRLNEIPGIS  319 (398)
T ss_pred             EEEEeCcH------HHHHHHHHHHHHHhcccccCChHHHH-HHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence            9998  43      33333221110   001122222222 22334432 12234677788888899999999875 777


Q ss_pred             EecCCCCCeeEEEEecCCC-CCH-HHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHH
Q 010008          388 LVSGGSDNHLVLVDLRPMG-IDG-ARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  464 (520)
Q Consensus       388 v~~~gt~~~~~~vd~~~~g-~~~-~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i  464 (520)
                      +..+ ..+++.|+.+.... .+. +.+.+.|.++||.+.    ||.. +...++++||++.      .+++++++..+.|
T Consensus       320 ~~~p-~g~~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~----~g~~f~~~~~~~iRis~~------~~~~~l~~~l~~l  388 (398)
T PRK08363        320 TTKP-QGAFYIFPRIEEGPWKDDKEFVLDVLHEAHVLFV----HGSGFGEYGAGHFRLVFL------PPVEILEEAMDRF  388 (398)
T ss_pred             ecCC-CeEEEEEEEeccCCCCCHHHHHHHHHHhCCEEEe----CchhhCCCCCCeEEEEec------CCHHHHHHHHHHH
Confidence            6443 23455555664311 133 445677899999994    4443 2223578999863      2368888888888


Q ss_pred             HHHHH
Q 010008          465 HEGVE  469 (520)
Q Consensus       465 ~~~l~  469 (520)
                      .+++.
T Consensus       389 ~~~~~  393 (398)
T PRK08363        389 EEFMR  393 (398)
T ss_pred             HHHHH
Confidence            87665

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.92  E-value=1.7e-23  Score=215.86  Aligned_cols=294  Identities=18%  Similarity=0.187  Sum_probs=199.7

Q ss_pred             hhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-CCCCCEEEEcCCCCCccccccccccccccccccc
Q 010008          135 EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  213 (520)
Q Consensus       135 ~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al-l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~  213 (520)
                      +..+++|    +.+++++|.+.     .+.++||++|+..++.++ ++|||+|+++.+.|.+...        .+...|.
T Consensus        18 ~~~~~~~----~~la~~~~~~~-----~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~--------~~~~~g~   80 (352)
T cd00616          18 PKVREFE----KAFAEYLGVKY-----AVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATAN--------AILLLGA   80 (352)
T ss_pred             HHHHHHH----HHHHHHhCCCe-----EEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHH--------HHHHcCC
Confidence            3455666    67889999753     355678999999999998 7999999999987654321        2333454


Q ss_pred             eEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCC
Q 010008          214 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF  293 (520)
Q Consensus       214 ~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~  293 (520)
                        +++.++++++++.+|++++++.+++ ++++|++.++ ++...|+++|.++|+++|+++|+|++|..|....+.   ++
T Consensus        81 --~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~-~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~---~~  153 (352)
T cd00616          81 --TPVFVDIDPDTYNIDPELIEAAITP-RTKAIIPVHL-YGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGR---KV  153 (352)
T ss_pred             --eEEEEecCCCcCCcCHHHHHHhcCc-CCeEEEEECC-CCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCE---Ec
Confidence              6777777755788999999999976 8999988643 455789999999999999999999999988764432   11


Q ss_pred             C-cccEEEeccC--cccCCCCceEEEeeCCCcchhhHHHhhcccCCCCCC-----------C-CChHHHH-HHHHHHHHH
Q 010008          294 K-YCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQ-----------G-GPHNHTI-GGLAVCLKH  357 (520)
Q Consensus       294 ~-~aDiv~~S~h--K~l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~-----------g-~p~~~~i-aala~al~~  357 (520)
                      . .+|+.++|+|  |+++++.||+++++++     ++.+++......+..           + +..+..+ +++  ++..
T Consensus       154 ~~~~d~~~~S~~~~K~~~~~~gg~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~--~~~~  226 (352)
T cd00616         154 GTFGDAGAFSFHPTKNLTTGEGGAVVTNDE-----ELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAI--GLAQ  226 (352)
T ss_pred             ccCcceeEEcCCCCCCCcccCceEEEECCH-----HHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHH--HHHH
Confidence            1 3688888876  9998888999998764     454444321111110           0 0011111 211  2221


Q ss_pred             hcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecCCC----CCeeEEEEecCC-CCCHHHHHHHHhhcCeEEcCCCCCCC
Q 010008          358 AQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGS----DNHLVLVDLRPM-GIDGARVEKILDMASITLNKNSVPGD  431 (520)
Q Consensus       358 ~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~gt----~~~~~~vd~~~~-g~~~~~~~~~L~~~gI~v~~~~~Pg~  431 (520)
                        ...+++..++..++++++.+.|.+ .|++++....    ..+++.+.+... +.+..++.+.|.+.||.++..+.|..
T Consensus       227 --l~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~~~~~~~~~  304 (352)
T cd00616         227 --LEKLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKEAGIETRVHYPPLH  304 (352)
T ss_pred             --HHhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCeeeecCccc
Confidence              124566778888999999999988 5888765422    123344444321 46788899999999998876554432


Q ss_pred             CCC------------C------CCCEEEEccCCccccCCCHHHHHHHHHHHH
Q 010008          432 KSA------------L------VPGGIRIGSPAMTTRGFSEKEFVAIADFIH  465 (520)
Q Consensus       432 ~~~------------~------~~~giRig~~~~tt~g~~~~d~~~la~~i~  465 (520)
                      ..+            +      ..+.||+++...    ++++|++++++.|+
T Consensus       305 ~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~----~t~~di~~i~~~l~  352 (352)
T cd00616         305 HQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPS----LTEEEIDRVIEALR  352 (352)
T ss_pred             cCHhhhhccCCCcCCChHHHHHHhCeEEccCCCC----CCHHHHHHHHHHhC
Confidence            110            0      126799988755    45999999998873

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.92  E-value=1e-22  Score=213.53  Aligned_cols=333  Identities=17%  Similarity=0.128  Sum_probs=219.4

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceeeecCChH
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSGS  169 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V~~~sGs  169 (520)
                      ..++|..+++.  +++.+.+++...+.+.. ..|+.      ......+++...+++.+.+|.  +++    +|.+++|+
T Consensus        32 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~------~~g~~~lr~~ia~~~~~~~~~~~~~~----~i~~~~g~  100 (393)
T PRK05764         32 DVISLGAGEPDFDTPEHIKEAAIEALDDGK-TKYTP------AAGIPELREAIAAKLKRDNGLDYDPS----QVIVTTGA  100 (393)
T ss_pred             CEEEeCCCCCCCCCCHHHHHHHHHHHhcCC-CCcCC------CCChHHHHHHHHHHHHHHhCCCCCHH----HEEEeCCc
Confidence            55777766653  56889999887775432 22332      222456665555666666664  443    45567776


Q ss_pred             -HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEEE
Q 010008          170 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLII  247 (520)
Q Consensus       170 -~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklIi  247 (520)
                       +|+..++.+++++||.|++++|.|.++..        .+...|.  +++.++++++ ++.+|++++++.+++ ++++|+
T Consensus       101 ~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~  169 (393)
T PRK05764        101 KQALYNAFMALLDPGDEVIIPAPYWVSYPE--------MVKLAGG--VPVFVPTGEENGFKLTVEQLEAAITP-KTKALI  169 (393)
T ss_pred             HHHHHHHHHHhcCCCCEEEecCCCCcchHH--------HHHHcCC--EEEEEecCcccCCcCCHHHHHHhhCc-cceEEE
Confidence             89999999999999999999998765421        2234455  6666666643 467999999999876 889999


Q ss_pred             EcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCC-----C--cccEEEeccCccc--CCCCce
Q 010008          248 AGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-----K--YCDVVTTTTHKSL--RGPRGG  313 (520)
Q Consensus       248 ~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~-----~--~aDiv~~S~hK~l--~GprgG  313 (520)
                      ++.++||+  ..   ++++|.++|+++|+++++|+++. .+...+....++     .  ..++++.|++|++  +|+|.|
T Consensus       170 ~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG  248 (393)
T PRK05764        170 LNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYE-KLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLG  248 (393)
T ss_pred             EECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEecccc-ceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeE
Confidence            99889887  33   48889999999999999999853 444332211111     1  2468889999986  677889


Q ss_pred             EEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCC
Q 010008          314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGG  392 (520)
Q Consensus       314 ~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~g  392 (520)
                      +++.++      ++.+.+.........+.+...+. +...++.. .....++..+++.++++.+.+.|.+. |+.+..+ 
T Consensus       249 ~i~~~~------~~~~~~~~~~~~~~~~~~~~~q~-~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-  319 (393)
T PRK05764        249 YAAGPK------ELIKAMSKLQSHSTSNPTSIAQY-AAVAALNG-PQDEVEEMRQAFEERRDLMVDGLNEIPGLECPKP-  319 (393)
T ss_pred             EEecCH------HHHHHHHHHHhhcccCCChHHHH-HHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCC-
Confidence            999877      67666654332222232233332 22334432 12233566777788888899999886 8876654 


Q ss_pred             CCCeeEEEEecCC----CCCHHHHH-HHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          393 SDNHLVLVDLRPM----GIDGARVE-KILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       393 t~~~~~~vd~~~~----g~~~~~~~-~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      ..+.++|+++...    +.+..++. .+++++||.+.    ||.... ..+++||++.      .+++++++.++.|.++
T Consensus       320 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~----~g~~f~-~~~~vRis~~------~~~~~~~~~i~~l~~~  388 (393)
T PRK05764        320 EGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVV----PGIAFG-APGYVRLSYA------TSLEDLEEGLERIERF  388 (393)
T ss_pred             CcceEEEEecccccccccCCHHHHHHHHHHhCCEEEc----cccccC-CCCEEEEEec------CCHHHHHHHHHHHHHH
Confidence            3345667777532    11235554 45578999994    444311 2678999864      3479999999999887


Q ss_pred             HH
Q 010008          468 VE  469 (520)
Q Consensus       468 l~  469 (520)
                      ++
T Consensus       389 ~~  390 (393)
T PRK05764        389 LE  390 (393)
T ss_pred             HH
Confidence            75

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.92  E-value=2.8e-23  Score=216.93  Aligned_cols=321  Identities=18%  Similarity=0.180  Sum_probs=209.6

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-CCCC
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPH  183 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al-l~pG  183 (520)
                      .++..++++...+.+.+        |+.| +..+++|    +.+++++|.+.     .|.++||++|+.+++.++ ++||
T Consensus         8 ~~~~~~~~v~~~~~~~~--------~~~g-~~~~~le----~~la~~~g~~~-----~v~~~sgt~al~~~l~al~~~~G   69 (380)
T TIGR03588         8 IDQDDIDAVVEVLKSDF--------LTQG-PTVPAFE----EALAEYVGAKY-----AVAFNSATSALHIACLALGVGPG   69 (380)
T ss_pred             CCHHHHHHHHHHHhcCC--------ccCC-hhHHHHH----HHHHHHHCCCe-----EEEEcCHHHHHHHHHHHcCCCCC
Confidence            34445666665554432        1112 3356666    67888999875     345578999999999999 8999


Q ss_pred             CEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhh----hcCCcEEEEcCCCCCCCCCH
Q 010008          184 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAI----LFRPKLIIAGASAYPRDFDY  259 (520)
Q Consensus       184 D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~----~~~pklIi~~~s~~p~~~d~  259 (520)
                      |+|++++++|.+..        ..+...|.  +++.++++++++.+|++++++.++    + ++++|++.++ ++...|+
T Consensus        70 d~Viv~~~~~~~~~--------~~~~~~G~--~~~~~~~~~~~~~~d~~~l~~~i~~~~~~-~t~~v~~~~~-~G~~~~~  137 (380)
T TIGR03588        70 DRVWTTPITFVATA--------NCALYCGA--KVDFVDIDPDTGNIDEDALEKKLAAAKGK-LPKAIVPVDF-AGKSVDM  137 (380)
T ss_pred             CEEEeCCcchHHHH--------HHHHHcCC--EEEEEecCCCcCCcCHHHHHHHhhcccCC-CceEEEEeCC-CCccCCH
Confidence            99999998765432        12334455  777888876778899999999998    4 7898887543 4557899


Q ss_pred             HHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccC--cccCCCCceEEEeeCCCcchhhHHHhhcccCCC
Q 010008          260 PRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAINNAVFP  337 (520)
Q Consensus       260 ~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~h--K~l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p  337 (520)
                      ++|.++|+++|++||+|++|+.|....+..-....++|++++|+|  |+++++.||+++++++     ++.++++.....
T Consensus       138 ~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~~~~~d~~~~S~~~~K~~~~~~GG~v~~~~~-----~~~~~~~~~~~~  212 (380)
T TIGR03588       138 QAIAALAKKHGLKIIEDASHALGAEYGGKPVGNCRYADATVFSFHPVKIITTAEGGAVTTNDE-----ELAERMRLLRSH  212 (380)
T ss_pred             HHHHHHHHHcCCEEEEECCCcccCccCCEeCCCccccceEEEecCCCCcccccCceEEEECCH-----HHHHHHHHHHHC
Confidence            999999999999999999999887643321111125699999998  8898889999999875     455443321100


Q ss_pred             C---------------------CCC-CChHHHH-HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecC--
Q 010008          338 G---------------------LQG-GPHNHTI-GGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSG--  391 (520)
Q Consensus       338 ~---------------------~~g-~p~~~~i-aala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~--  391 (520)
                      +                     ..| +..+..+ +++  ++.++  ..+++..++..++++++.+.|.+. ++.+...  
T Consensus       213 g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~--g~~qL--~~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~  288 (380)
T TIGR03588       213 GITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAAL--GLSQL--KKLDRFVAKRREIAARYDRLLKDLPYFTPLTIPL  288 (380)
T ss_pred             CCCCCcccccccccCcceeeeeccccccCccHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCC
Confidence            0                     001 0111122 222  22222  235677788888899999999774 3443322  


Q ss_pred             CCC--CeeEEEEecC-CCCCHHHHHHHHhhcCeEEcCCCCCCCCCC-C---------------CCCEEEEccCCccccCC
Q 010008          392 GSD--NHLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDKSA-L---------------VPGGIRIGSPAMTTRGF  452 (520)
Q Consensus       392 gt~--~~~~~vd~~~-~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~-~---------------~~~giRig~~~~tt~g~  452 (520)
                      +..  .+.+.+.+.. .+.+.+++.+.|.+.||.++..+.|.+..+ +               ....|++..+    ..+
T Consensus       289 ~~~~~~~~~~i~~~~~~~~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~----~~l  364 (380)
T TIGR03588       289 GSKSAWHLYPILLDQEFGCTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLH----PAL  364 (380)
T ss_pred             CCEeEEEEEEEEECCcCCCCHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCC----CCC
Confidence            111  1333333432 345778899999999999886654533110 0               0144666543    246


Q ss_pred             CHHHHHHHHHHHHHHH
Q 010008          453 SEKEFVAIADFIHEGV  468 (520)
Q Consensus       453 ~~~d~~~la~~i~~~l  468 (520)
                      +++|++++++.|++++
T Consensus       365 ~~~dv~~i~~~l~~~~  380 (380)
T TIGR03588       365 TLEQQQRVVETLRKVL  380 (380)
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            7999999999998763

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PLN02187 rooty/superroot1

Probab=99.92  E-value=1.2e-22  Score=216.97  Aligned_cols=344  Identities=13%  Similarity=0.100  Sum_probs=219.3

Q ss_pred             ccceEecCCC-----C-ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceeeec
Q 010008           94 KSLELIASEN-----F-TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQP  165 (520)
Q Consensus        94 ~~i~Liasen-----~-~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V~~  165 (520)
                      +.|.|..++.     + +++.+.+++...+......+|..      .....++++...+++.+.+|.  +++    +|.+
T Consensus        67 ~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~------~~G~~~lR~aiA~~~~~~~~~~~~~~----~I~i  136 (462)
T PLN02187         67 TILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKGNSYGP------GAGILPARRAVADYMNRDLPHKLTPE----DIFL  136 (462)
T ss_pred             CeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC------CCChHHHHHHHHHHHHHhcCCCCCcc----cEEE
Confidence            5677876643     2 45788888887765432223321      122345665555666665554  554    5667


Q ss_pred             CChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC-CCCCCCHHHHHHHhhhcCC
Q 010008          166 LSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRP  243 (520)
Q Consensus       166 ~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-~~~~iD~d~le~~i~~~~p  243 (520)
                      ++|+ +|+..++.++++|||+|++++|.|.++.        ..+...|.  +++.+++.+ +++.+|++++++++++ ++
T Consensus       137 t~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~--------~~~~~~g~--~~~~~~l~~~~~~~~d~~~l~~~~~~-~~  205 (462)
T PLN02187        137 TAGCNQGIEIVFESLARPNANILLPRPGFPHYD--------ARAAYSGL--EVRKFDLLPEKEWEIDLEGIEAIADE-NT  205 (462)
T ss_pred             eCCHHHHHHHHHHHhcCCCCEEEEeCCCCccHH--------HHHHHcCC--EEEEEeCccccCCccCHHHHHHhcCC-Cc
Confidence            8888 8999999999999999999999876532        12334565  555655543 3578999999999877 78


Q ss_pred             cEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cc----cEEEeccCccc--CCCC
Q 010008          244 KLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YC----DVVTTTTHKSL--RGPR  311 (520)
Q Consensus       244 klIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~a----Div~~S~hK~l--~Gpr  311 (520)
                      ++++++.|+||+  .++   +++|.++|+++|++||+|++ |..+++.+....++. ..    -+++.|++|++  +|+|
T Consensus       206 ~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~-Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlR  284 (462)
T PLN02187        206 VAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEV-YDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGWK  284 (462)
T ss_pred             EEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEecc-ccccccCCCCceeHHHhccCCcEEEEecchhhcCCccce
Confidence            999999999997  454   77888899999999999999 556655432211221 11    26779999984  8999


Q ss_pred             ceEEEeeCCCcchhhHHHhhcccCCCC-CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEE-e
Q 010008          312 GGMIFFKKDPVLGVELESAINNAVFPG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL-V  389 (520)
Q Consensus       312 gG~I~~~~~~~~~~~l~~~i~~~~~p~-~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v-~  389 (520)
                      .||++++++... .++.+.+.....+. ...+++....+++..+|+......+++..+.+.++++.+.+.|.+.+... +
T Consensus       285 iG~~v~~~p~~~-~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~  363 (462)
T PLN02187        285 IGWIALNDPEGV-FETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVVCP  363 (462)
T ss_pred             eEEEEecCchhH-HHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCC
Confidence            999998542100 00122332221111 12223333444444456531122347777888899999999998854322 2


Q ss_pred             cCCCCCeeEEEEecC---CCC-CH-HHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHH
Q 010008          390 SGGSDNHLVLVDLRP---MGI-DG-ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  464 (520)
Q Consensus       390 ~~gt~~~~~~vd~~~---~g~-~~-~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i  464 (520)
                      .......++|+++..   .++ +. +.+.+++.++||.+    .||.... .+++|||++.      ..++.+++..+.|
T Consensus       364 ~~P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v----~pG~~fg-~~~~iRis~~------~~~e~l~~al~rL  432 (462)
T PLN02187        364 KKPESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVF----LPGDALG-LKNWMRITIG------VEAHMLEDALERL  432 (462)
T ss_pred             CCCCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEE----ECccccC-CCCeEEEEeC------CCHHHHHHHHHHH
Confidence            222234666776632   122 33 44667789999999    4554311 3578999864      2367788888888


Q ss_pred             HHHHHHH
Q 010008          465 HEGVEIT  471 (520)
Q Consensus       465 ~~~l~~~  471 (520)
                      .++++..
T Consensus       433 ~~~l~~~  439 (462)
T PLN02187        433 KGFCTRH  439 (462)
T ss_pred             HHHHHHh
Confidence            8887643

>PRK07777 aminotransferase; Validated

Probab=99.92  E-value=1.6e-22  Score=211.68  Aligned_cols=358  Identities=15%  Similarity=0.140  Sum_probs=223.5

Q ss_pred             ccccChHHHHHHHHHHHHhhccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 010008           74 LGEADPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA  151 (520)
Q Consensus        74 l~~~d~~~~~~~~~e~~~~~~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~l  151 (520)
                      +....++++..+.+... ....++|..+..  ..++.+.+++...+.... .+|+.      .....++++.+.+++.+.
T Consensus         6 ~~~~~~~~~~~~~~~~~-~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~-~~Y~~------~~g~~~lr~~ia~~~~~~   77 (387)
T PRK07777          6 LRPFGTTIFAEMSALAV-RTGAVNLGQGFPDEDGPPEMLEAAQEAIAGGV-NQYPP------GPGIPELRAAIAAQRRRR   77 (387)
T ss_pred             hhhcCccHHHHHHHHHh-hCCeEEccCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC------CCCCHHHHHHHHHHHHHH
Confidence            34445544444433333 235688876442  345667777766654321 12332      122345666666777888


Q ss_pred             cCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC--CCC
Q 010008          152 FNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--TGL  228 (520)
Q Consensus       152 fg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~--~~~  228 (520)
                      +|++.+.- -+|.+++|+ +|+.+++.++++|||+|++++|.|.++.        ..+...|.  +++.++++++  ++.
T Consensus        78 ~g~~~~~~-~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~--------~~~~~~g~--~~~~~~~~~~~~~~~  146 (387)
T PRK07777         78 YGLEYDPD-TEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYA--------AVIAMAGA--HRVPVPLVPDGRGFA  146 (387)
T ss_pred             hCCCCCCC-CcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhH--------HHHHHCCC--EEEEeecCCccCCCc
Confidence            88763210 135567776 8999999999999999999998775432        12334455  5555666543  467


Q ss_pred             CCHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCC------Cccc
Q 010008          229 VDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF------KYCD  297 (520)
Q Consensus       229 iD~d~le~~i~~~~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~------~~aD  297 (520)
                      +|++++++.+.+ ++++|++++++||+  ..   ++++|.++|+++|+++|+|+++ .++.+.+....++      ...+
T Consensus       147 ~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y-~~~~~~~~~~~~~~~~~~~~~~~  224 (387)
T PRK07777        147 LDLDALRAAVTP-RTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVY-EHLVFDGARHLPLATLPGMRERT  224 (387)
T ss_pred             CCHHHHHHhcCc-ccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccc-hhcccCCCCcccHhhCCCCcCcE
Confidence            999999999877 89999999889887  33   4888999999999999999985 4544433211121      1346


Q ss_pred             EEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q 010008          298 VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCR  375 (520)
Q Consensus       298 iv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~  375 (520)
                      +++.|+||++  +|.|.||+++++      ++.+.+...........+...+. +++.++... ....+...+.+.++++
T Consensus       225 i~~~S~SK~~g~~GlRiG~~~~~~------~l~~~~~~~~~~~~~~~~~~~q~-~~~~~l~~~-~~~~~~~~~~~~~~~~  296 (387)
T PRK07777        225 VTISSAAKTFNVTGWKIGWACGPA------PLIAAVRAAKQYLTYVGGAPFQP-AVAHALDHE-DAWVAALRDSLQAKRD  296 (387)
T ss_pred             EEEeechhhccCcCceeEEEecCH------HHHHHHHHHHhhcccCCCCHHHH-HHHHHHhCC-cHHHHHHHHHHHHHHH
Confidence            8899999987  588889999887      56655543221111111222222 223334321 2233666788889999


Q ss_pred             HHHHHHHHCCCEEecCCCCCeeEEEEecCCC-CCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCC
Q 010008          376 ALASRLVELGYKLVSGGSDNHLVLVDLRPMG-IDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFS  453 (520)
Q Consensus       376 ~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g-~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~  453 (520)
                      .+.+.|.+.|+.+..+ ..++++|++++..+ .++.++.+.| +++||.+..+...+...+..++++||+...      .
T Consensus       297 ~l~~~L~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~------~  369 (387)
T PRK07777        297 RLAAGLAEAGFEVHDS-AGTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCK------R  369 (387)
T ss_pred             HHHHHHHhCCCCccCC-CcceEEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecC------C
Confidence            9999998888876654 23566676765322 3566666666 679999954321111112235689998642      3


Q ss_pred             HHHHHHHHHHHHHH
Q 010008          454 EKEFVAIADFIHEG  467 (520)
Q Consensus       454 ~~d~~~la~~i~~~  467 (520)
                      ++++++..+.|.+.
T Consensus       370 ~~~l~~~l~~l~~~  383 (387)
T PRK07777        370 DDTLDEAIRRLRAL  383 (387)
T ss_pred             HHHHHHHHHHHHHH
Confidence            67887777777654

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=7.2e-23  Score=213.76  Aligned_cols=317  Identities=17%  Similarity=0.165  Sum_probs=215.5

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      +.|+|..++|+  +|+.+++++... .  +...||.      .. ..++    ++.+++++|++++    +|.+++|+ +
T Consensus        53 ~~i~l~~n~~p~~~~~~v~~a~~~~-~--~~~~Yp~------~~-~~~l----r~~ia~~~~~~~~----~I~~t~Ga~~  114 (380)
T PLN03026         53 DIVKLDANENPYGPPPEVLEALGNM-K--FPYVYPD------PE-SRRL----RAALAEDSGLESE----NILVGCGADE  114 (380)
T ss_pred             ceEEccCCCCCCCCCHHHHHHHHhh-H--hhccCCC------CC-HHHH----HHHHHHHhCcChh----hEEEcCCHHH
Confidence            56889889875  678899988642 1  1112332      11 2333    3678888999886    56779998 8


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  250 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~  250 (520)
                      ++..++.++++|||+|++++|.|+.+.        ......|.  +++.++++ +++.+|++++++.+...++|+|++++
T Consensus       115 ~i~~~~~~~~~~gd~Vlv~~P~y~~y~--------~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~~~~~~~~~v~l~~  183 (380)
T PLN03026        115 LIDLLMRCVLDPGDKIIDCPPTFGMYV--------FDAAVNGA--EVIKVPRT-PDFSLDVPRIVEAVETHKPKLLFLTS  183 (380)
T ss_pred             HHHHHHHHhcCCCCEEEEcCCChHHHH--------HHHHHcCC--EEEEeecC-CCCCcCHHHHHHHHhccCCcEEEEeC
Confidence            998898999999999999999764321        12234455  56666665 45789999999988433899999999


Q ss_pred             CCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCccc--CCCCceEEEeeCCCcch
Q 010008          251 SAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLG  324 (520)
Q Consensus       251 s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l--~GprgG~I~~~~~~~~~  324 (520)
                      |+||+  .++.+++.++++.. +++++|+++ ..+...+.....+.  ...+++.|++|.+  +|+|.||+++++     
T Consensus       184 P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY-~~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~-----  256 (380)
T PLN03026        184 PNNPDGSIISDDDLLKILELP-ILVVLDEAY-IEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPL-----  256 (380)
T ss_pred             CCCCCCCCCCHHHHHHHHhcC-CEEEEECcc-hhhcCCcchHHHHHhCCCEEEEecchHhhcCccccceeeecCH-----
Confidence            99997  78999999999864 999999995 34433221111111  1237889999986  799999999987     


Q ss_pred             hhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCC-CEEecCCCCCeeEEEEec
Q 010008          325 VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG-YKLVSGGSDNHLVLVDLR  403 (520)
Q Consensus       325 ~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G-~~v~~~gt~~~~~~vd~~  403 (520)
                       ++.+.+.+...+.  +.+...+.++ ..+|+.  ...+++..+++.++++.+.+.|++.| +.+...  .++++|+++.
T Consensus       257 -~~i~~l~~~~~~~--~~~~~~q~aa-~~aL~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~--~~~f~~~~~~  328 (380)
T PLN03026        257 -SIIEYLWRAKQPY--NVSVAAEVAA-CAALSN--PKYLEDVKNALVEERERLFGLLKEVPFLEPYPS--DANFILCRVT  328 (380)
T ss_pred             -HHHHHHHHhcCCC--CCCHHHHHHH-HHHhhC--HHHHHHHHHHHHHHHHHHHHHHHHCCCCeECCC--CCeEEEEECC
Confidence             6777665543332  2222223332 334532  12236677788888999999998865 444332  3466777764


Q ss_pred             CCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          404 PMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       404 ~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      . +.+..++.+.|.++||.+..    +.. ...++++||++.       +.++++++.+.++++
T Consensus       329 ~-~~~~~~~~~~l~~~gI~v~~----~~~-~~~~~~lRis~~-------~~~~~~~l~~al~~~  379 (380)
T PLN03026        329 S-GRDAKKLKEDLAKMGVMVRH----YNS-KELKGYIRVSVG-------KPEHTDALMEALKQL  379 (380)
T ss_pred             C-CCCHHHHHHHHHHCCeEEEE----CCC-CCCCCEEEEecC-------CHHHHHHHHHHHHHh
Confidence            2 45677788888899999954    322 223578999864       367899999988753

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.92  E-value=1.4e-22  Score=212.84  Aligned_cols=294  Identities=19%  Similarity=0.156  Sum_probs=189.5

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCC--CCEEEEcCCCCCcccccccccccccccccc--c
Q 010008          139 ELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKP--HDRIMGLDLPHGGHLSHGFMTPKRRVSGTS--I  213 (520)
Q Consensus       139 ~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~p--GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g--~  213 (520)
                      ++.+.+++++++++|++.++  +.+. .+|+ +++.+++.+++++  ||+|+++++.|+++...        +...+  .
T Consensus        64 ~~~~~~~~~la~~~g~~~~~--v~~~-~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~--------~~~~~~~~  132 (398)
T cd00613          64 QALFELQTMLCELTGMDVAN--ASLQ-DEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAV--------ARTRGEPL  132 (398)
T ss_pred             HHHHHHHHHHHHHHCCCccc--eecc-CchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHH--------HHHhcccC
Confidence            55556678999999998643  2333 4455 5666666777776  99999999988765321        12222  0


Q ss_pred             eEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC-CCCH-HHHHHHHHHhCCEEEEechhhcccccccccCC
Q 010008          214 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-DFDY-PRMRQIADAVGALLMMDMAHISGLVAASVVAD  291 (520)
Q Consensus       214 ~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~-~~d~-~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~  291 (520)
                      ..+++.++++ +++.+|++++++++.+ ++++|+++.++..+ ..|+ ++|+++|+++|+++++|++|..+........ 
T Consensus       133 g~~~~~v~~~-~~~~~d~~~l~~~i~~-~t~~viv~~~~~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~-  209 (398)
T cd00613         133 GIEVVEVPSD-EGGTVDLEALKEEVSE-EVAALMVQYPNTLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGE-  209 (398)
T ss_pred             CcEEEEeccC-CCCCcCHHHHHHhcCC-CeEEEEEECCCCCceecchHHHHHHHHHhcCCEEEEEeccccccCCCChHH-
Confidence            1255556665 3568999999999987 89999988765333 5675 9999999999999999998866542211101 


Q ss_pred             CCCcccEEEeccCccc-----CCCCceEEEeeCCCcchhhHHHhhcccC------------CC-----------CCCCCC
Q 010008          292 PFKYCDVVTTTTHKSL-----RGPRGGMIFFKKDPVLGVELESAINNAV------------FP-----------GLQGGP  343 (520)
Q Consensus       292 p~~~aDiv~~S~hK~l-----~GprgG~I~~~~~~~~~~~l~~~i~~~~------------~p-----------~~~g~p  343 (520)
                        .++|++++|+|||+     .||++|+++.++      ++.+.+....            +.           ...+++
T Consensus       210 --~~~d~~~~s~~K~~~p~g~Ggp~~g~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~  281 (398)
T cd00613         210 --YGADIVVGNLQKTGVPHGGGGPGAGFFAVKK------ELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATS  281 (398)
T ss_pred             --cCCCEEEeeccccCCCCCCCCCceeEEEEhh------hhHhhCCCCeeccccccCCCcceEEecccchhhcccccccc
Confidence              15899999999997     257789999987      3433321100            00           001111


Q ss_pred             h-----HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCC-CCCHHHHHHHHh
Q 010008          344 H-----NHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM-GIDGARVEKILD  417 (520)
Q Consensus       344 ~-----~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~-g~~~~~~~~~L~  417 (520)
                      +     ....++.+.++......++++..+++.++++++.+.|.+.+......+...+.+++++... +.+..++.+.|.
T Consensus       282 ~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~L~  361 (398)
T cd00613         282 NICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGVLPFNGPFFHEFVLRLPPLYGIRAEDLAKALI  361 (398)
T ss_pred             cceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCeeEEEEEEcCCcchHHHHHHHHhhh
Confidence            1     1122222334454444566788899999999999999886544322222223345555421 334567888888


Q ss_pred             hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHH
Q 010008          418 MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  464 (520)
Q Consensus       418 ~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i  464 (520)
                      +.||.+....      +..++.||++.+.++|    ++|++++++.|
T Consensus       362 ~~gi~~~~~~------~~~~~~lRis~~~~~t----~edid~~~~~L  398 (398)
T cd00613         362 DGGFHAPTMY------LPVDGTLMIEPTETET----KEELDALLEAL  398 (398)
T ss_pred             hcCccccccc------cCCCCeEEEEcCCCCC----HHHHHHHHHhC
Confidence            8999874311      1235789999887665    89999998753

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=4.5e-23  Score=213.43  Aligned_cols=320  Identities=18%  Similarity=0.146  Sum_probs=220.0

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      +.|+|..+||+  +|+.+++++.+.+.+....+||..    |   ..+++    +.+++++|++.+   .+|.+++|+ +
T Consensus        27 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~----~---~~~lr----~~ia~~~~~~~~---~~I~~t~G~~~   92 (356)
T PRK04870         27 GMVKLDAMENPYRLPAELRAELGERLAEVALNRYPDP----R---AAALK----AALRAAMGVPAG---ADVLLGNGSDE   92 (356)
T ss_pred             CceeCcCCCCCCCCCHHHHHHHHHHhhccccccCCCC----C---HHHHH----HHHHHHhCcCCC---CcEEEcCCHHH
Confidence            56888888884  689999999887753222345431    1   13333    567788888753   256779998 7


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  250 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~  250 (520)
                      ++..++.++++|||+|++++|.|.++.        ......|.  +++.++++ +++.+|++++++.+...++|+|+++.
T Consensus        93 ~i~~~~~~~~~~gd~vlv~~P~y~~~~--------~~~~~~g~--~~~~i~~~-~~~~~d~~~l~~~~~~~~~~~v~l~~  161 (356)
T PRK04870         93 LIQLLALACAKPGATVLAPEPGFVMYR--------MSAKLAGL--EFVGVPLT-ADFTLDLPAMLAAIAEHRPALVFLAY  161 (356)
T ss_pred             HHHHHHHHhcCCCCEEEECCCCHHHHH--------HHHHHcCC--EEEEecCC-CCCCCCHHHHHHHhhcCCCCEEEEcC
Confidence            888888899999999999998765432        12334565  67777776 45789999999998765899999998


Q ss_pred             CCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-c-ccEEEeccCcc-cCCCCceEEEeeCCCcchh
Q 010008          251 SAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-Y-CDVVTTTTHKS-LRGPRGGMIFFKKDPVLGV  325 (520)
Q Consensus       251 s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~-aDiv~~S~hK~-l~GprgG~I~~~~~~~~~~  325 (520)
                      |+||+  ..+.+++.++++..++++|+|+++. .+......+ .+. + .-+++.|++|+ ++|+|.||+++++      
T Consensus       162 p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~-~~~~~~~~~-~~~~~~~vi~~~S~SK~~~~GlRiG~~i~~~------  233 (356)
T PRK04870        162 PNNPTGNLFDDADVERIIEAAPGLVVVDEAYQ-PFAGDSWLP-RLARFPNLLVMRTVSKLGLAGLRLGYLAGHP------  233 (356)
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCCEEEEECCch-hhcCcchHH-HHhhCCCEEEEecchhhhhHHHhhhhhhCCH------
Confidence            99997  7888888888887799999999853 333211111 111 2 23788999993 3789999999987      


Q ss_pred             hHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCCeeEEEEecC
Q 010008          326 ELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVLVDLRP  404 (520)
Q Consensus       326 ~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~~~~vd~~~  404 (520)
                      ++.+++.....+.  +.....+.+ ...+++.  ...+++..+++.++++.+.+.|++. |+.+..+  .+.++|+.+. 
T Consensus       234 ~~i~~~~~~~~~~--~~~~~~q~~-a~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~~~~~~~~~-  305 (356)
T PRK04870        234 AWIAELDKVRPPY--NVNVLTQAT-ALFALEH--VDVLDAQAAQLRAERTRLAAALAALPGVTVFPS--AANFILVRVP-  305 (356)
T ss_pred             HHHHHHHHccCCC--cCCHHHHHH-HHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCC--CCeEEEEECC-
Confidence            6767665543222  122222222 2223332  1234667788888999999999885 8766443  3456777664 


Q ss_pred             CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          405 MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       405 ~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                         +..++.+.|++.||.+......   ....++++||++.       +.++++++.++|+++
T Consensus       306 ---~~~~~~~~l~~~gI~v~~~~~f---~~~~~~~iRis~~-------~~~~~~~l~~al~~~  355 (356)
T PRK04870        306 ---DAAAVFDGLKTRGVLVKNLSGM---HPLLANCLRVTVG-------TPEENAQFLAALKAA  355 (356)
T ss_pred             ---CHHHHHHHHHHCCEEEEECCCC---CCCCCCeEEEeCC-------CHHHHHHHHHHHHHh
Confidence               4577888899999999543211   1224678999864       368999999998765

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.92  E-value=1.7e-22  Score=210.83  Aligned_cols=330  Identities=17%  Similarity=0.189  Sum_probs=215.7

Q ss_pred             ccceEecCCC--C-ChHHHHHHHhhhhhccCCCCCCCCCCCCc-chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH
Q 010008           94 KSLELIASEN--F-TSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS  169 (520)
Q Consensus        94 ~~i~Liasen--~-~~~~V~ea~~s~l~~~y~~G~p~~ryy~g-~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs  169 (520)
                      ..|+|..+++  + .+|.|++++...+.. |..+++..++..| .+..+    ..++++++++|.+ +    .+.+++|+
T Consensus        40 ~~id~~~~~~~g~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~----~l~~~la~~~~~~-~----~i~~~~g~  109 (385)
T PRK05958         40 RMLNFASNDYLGLARHPRLIAAAQQAARR-YGAGSGGSRLVTGNSPAHE----ALEEELAEWFGAE-R----ALLFSSGY  109 (385)
T ss_pred             eEEEeeCCCcccCCCCHHHHHHHHHHHHh-cCCCCCCcCcccCCcHHHH----HHHHHHHHHhCCC-c----EEEECcHH
Confidence            5578877764  3 578999999888753 4333333232222 22233    3446788889853 2    45668888


Q ss_pred             HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc--CCcEEE
Q 010008          170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLII  247 (520)
Q Consensus       170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~--~pklIi  247 (520)
                      +++..++.++++|||+|++.++.|+++..        .....|.  +++.++      ..|++++++.++..  ++.+++
T Consensus       110 ~~~~~~l~~~~~~gd~V~~~~~~~~~~~~--------~~~~~g~--~~~~~~------~~d~~~l~~~i~~~~~~~~lvi  173 (385)
T PRK05958        110 AANLAVLTALAGKGDLIVSDKLNHASLID--------GARLSRA--RVRRYP------HNDVDALEALLAKWRAGRALIV  173 (385)
T ss_pred             HHHHHHHHHhCCCCCEEEEeCccCHHHHH--------HHHhcCC--ceEEeC------CCCHHHHHHHHHhccCCCeEEE
Confidence            88888888899999999999987765431        1233444  333433      24889999988763  245666


Q ss_pred             EcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccc-cc-cCC--CCC-c-ccEEEeccCcccCCCCceEEEeeC
Q 010008          248 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAA-SV-VAD--PFK-Y-CDVVTTTTHKSLRGPRGGMIFFKK  319 (520)
Q Consensus       248 ~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~-~~-~~~--p~~-~-aDiv~~S~hK~l~GprgG~I~~~~  319 (520)
                      ++.+.+++  ..++++|+++|+++|+++|+|++|..|.... +. ...  .+. . .++++.|+||++ |+.||+++.++
T Consensus       174 ~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~-~~~Gg~~~~~~  252 (385)
T PRK05958        174 TESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKAL-GSSGAAVLGSE  252 (385)
T ss_pred             EEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhc-ccCCcEEEcCH
Confidence            66555443  7889999999999999999999987665421 11 010  122 2 347889999998 56789988876


Q ss_pred             CCcchhhHHHhhcccCCCCC-CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeE
Q 010008          320 DPVLGVELESAINNAVFPGL-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLV  398 (520)
Q Consensus       320 ~~~~~~~l~~~i~~~~~p~~-~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~  398 (520)
                            ++.+.+.....+.. .++++...+++...+++.....  +...+++.++++.+.+.|++.|++++.+  .+.++
T Consensus       253 ------~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~~  322 (385)
T PRK05958        253 ------TLIDYLINRARPFIFTTALPPAQAAAARAALRILRRE--PERRERLAALIARLRAGLRALGFQLMDS--QSAIQ  322 (385)
T ss_pred             ------HHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcCCCcCCC--CCCEE
Confidence                  56655543222222 2334455555555677765432  4567888888999999999888876553  23456


Q ss_pred             EEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          399 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       399 ~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      ++.+.. ..+..++.+.|.+.||.+.....|.  .+..+.++||+.+..+    +++|++++++.|+++
T Consensus       323 ~~~~~~-~~~~~~~~~~l~~~gI~v~~~~~~~--~~~~~~~lRis~~~~~----~~~~i~~~l~~l~~~  384 (385)
T PRK05958        323 PLIVGD-NERALALAAALQEQGFWVGAIRPPT--VPAGTSRLRITLTAAH----TEADIDRLLEALAEA  384 (385)
T ss_pred             EEEeCC-HHHHHHHHHHHHHCCceEecccCCC--CCCCCceEEEEecCCC----CHHHHHHHHHHHHhc
Confidence            665532 2345668888888999996422221  1123468999976543    489999999998765

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.92  E-value=1.3e-22  Score=213.12  Aligned_cols=333  Identities=14%  Similarity=0.119  Sum_probs=214.2

Q ss_pred             hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC---CCCCceeeecCC
Q 010008           93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD---ENKWGVNVQPLS  167 (520)
Q Consensus        93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~---~~~~~~~V~~~s  167 (520)
                      .+.|+|..+++.  +++.+.+++...+...  ..|+.   ..|   ..++.+...+++.+.+|.+   ++   -+|.+++
T Consensus        29 ~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~--~~Y~~---~~G---~~~lr~~ia~~~~~~~g~~~~~~~---~~i~it~   97 (396)
T PRK09147         29 LPPISLSIGEPKHPTPAFIKDALAANLDGL--ASYPT---TAG---LPALREAIAAWLERRYGLPALDPA---TQVLPVN   97 (396)
T ss_pred             CCeEecCCCCCCCCCCHHHHHHHHHHhhhh--cCCCC---CCC---CHHHHHHHHHHHHHHhCCCcCCcc---ceEEECC
Confidence            366888777753  5788889987765421  23433   122   2345555567787777854   32   1566788


Q ss_pred             hH-HHHHHHHHhhCCC---CCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcC
Q 010008          168 GS-PANFEVYTAILKP---HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFR  242 (520)
Q Consensus       168 Gs-~A~~~~l~all~p---GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~  242 (520)
                      |+ +|+..++.++++|   ||.|++++|.|.++.        ......|.  ++++++++++ ++.+|++++++.+.+ +
T Consensus        98 G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~--------~~~~~~g~--~~~~vp~~~~~~~~~d~~~l~~~~~~-~  166 (396)
T PRK09147         98 GSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYE--------GAALLAGA--EPYFLNCDPANNFAPDFDAVPAEVWA-R  166 (396)
T ss_pred             ChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchH--------HHHHhcCC--EEEEeccCccccCccCHHHHHHHHhh-c
Confidence            88 8999999999999   999999999775442        12334555  6777777654 358999999888876 8


Q ss_pred             CcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCC--CCC-----c---cc--EEEeccCc
Q 010008          243 PKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK-----Y---CD--VVTTTTHK  305 (520)
Q Consensus       243 pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~--p~~-----~---aD--iv~~S~hK  305 (520)
                      +|+|+++.|+||+  .+   .+++|.++|++++++||+|+++ ..+.+.+..+.  .+.     +   .+  +++.|++|
T Consensus       167 ~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK  245 (396)
T PRK09147        167 TQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECY-SEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSK  245 (396)
T ss_pred             cEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccc-cccccCCCCCCchhhhhccccCccccccEEEEecccc
Confidence            9999999999997  44   5677888899999999999994 44443331111  010     1   12  78899999


Q ss_pred             c--cCCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Q 010008          306 S--LRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE  383 (520)
Q Consensus       306 ~--l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~  383 (520)
                      .  ++|.|.||+++++      ++.+++.........+.+...+.+++ .++..  ....++..+++.++++.+.+.|.+
T Consensus       246 ~~~~~GlRiG~~~~~~------~l~~~~~~~~~~~~~~~~~~~q~a~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~L~~  316 (396)
T PRK09147        246 RSNVPGLRSGFVAGDA------ALLKKFLLYRTYHGCAMPPAVQAASI-AAWND--EAHVRENRALYREKFDAVTPILAP  316 (396)
T ss_pred             ccCCccceeeeecCCH------HHHHHHHHHhhhcccCCCHHHHHHHH-HHhcc--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            5  5899999999987      66666544321111122222233222 23321  223466677788888888888876


Q ss_pred             CCCEEecCCCCCeeEEEEecCCCCCHHHH-HHHHhhcCeEEcCCCCCCCC---CCCCCCEEEEccCCccccCCCHHHHHH
Q 010008          384 LGYKLVSGGSDNHLVLVDLRPMGIDGARV-EKILDMASITLNKNSVPGDK---SALVPGGIRIGSPAMTTRGFSEKEFVA  459 (520)
Q Consensus       384 ~G~~v~~~gt~~~~~~vd~~~~g~~~~~~-~~~L~~~gI~v~~~~~Pg~~---~~~~~~giRig~~~~tt~g~~~~d~~~  459 (520)
                      . +.+..+ ..+.++|+++.   .+..++ ..+|++.||.+..+...+..   .....+++||++..      .++++++
T Consensus       317 ~-~~~~~p-~~g~f~~~~~~---~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~------~~~~l~~  385 (396)
T PRK09147        317 V-LDVQLP-DAGFYLWAKVP---GDDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVA------PLAECVE  385 (396)
T ss_pred             h-cCCCCC-CeeEEEEEECC---CCHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecC------CHHHHHH
Confidence            4 444333 23567788875   244555 44557899999543222110   11235789998642      3577887


Q ss_pred             HHHHHHHHH
Q 010008          460 IADFIHEGV  468 (520)
Q Consensus       460 la~~i~~~l  468 (520)
                      ..+.|.+.+
T Consensus       386 ~l~rl~~~~  394 (396)
T PRK09147        386 AAERIVDFC  394 (396)
T ss_pred             HHHHHHHHh
Confidence            777777654

>PRK06855 aminotransferase; Validated

Probab=99.92  E-value=1.9e-22  Score=214.15  Aligned_cols=344  Identities=17%  Similarity=0.128  Sum_probs=214.9

Q ss_pred             ccceEecCCC-----CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCceeeecC
Q 010008           94 KSLELIASEN-----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPL  166 (520)
Q Consensus        94 ~~i~Liasen-----~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~  166 (520)
                      +.+.|..++.     .+|+.+.+++...+.+.-..+|+.   ..|   ..++.+...+++.+.+|++  ++    +|.+|
T Consensus        33 ~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~---~~G---~~~LReaia~~~~~~~g~~~~~~----~I~it  102 (433)
T PRK06855         33 KITWENIGDPIAKGEKIPDWMKEIVAELVMDDKSYGYCP---TKG---VLETREFLAELNNKRGGAQITPD----DIIFF  102 (433)
T ss_pred             cccccccCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCC---CCC---CHHHHHHHHHHHHhccCCCCCHh----HEEEc
Confidence            4577765554     578888888887664322223332   123   2355555557777777754  43    67779


Q ss_pred             ChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhc-CC
Q 010008          167 SGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILF-RP  243 (520)
Q Consensus       167 sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~-~p  243 (520)
                      +|+ +|+..++. +++|||.|++.+|.|.++...       .....|  .+++.++++++ ++.+|+++|+++++.. ++
T Consensus       103 ~G~~~al~~~~~-l~~~Gd~Vlv~~P~Y~~~~~~-------~~~~~g--~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~  172 (433)
T PRK06855        103 NGLGDAIAKIYG-LLRREARVIGPSPAYSTHSSA-------EAAHAG--YPPVTYRLDPENNWYPDLDDLENKVKYNPSI  172 (433)
T ss_pred             CcHHHHHHHHHH-hcCCCCeEEEeCCCCchHHHH-------HHHhcC--CeEEEEecccccCCCCCHHHHHHHHhcCCCc
Confidence            998 88887774 889999999999988653210       011123  36677777643 4679999999998742 57


Q ss_pred             cEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCC----Cc-ccEEEeccCccc--CCCC
Q 010008          244 KLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF----KY-CDVVTTTTHKSL--RGPR  311 (520)
Q Consensus       244 klIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~----~~-aDiv~~S~hK~l--~Gpr  311 (520)
                      +++++++|+||+  .++   +++|.++|+++|++||+|++ |..+.+.+....++    +. ..|++.|++|++  +|+|
T Consensus       173 ~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~-Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlR  251 (433)
T PRK06855        173 AGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEI-YNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSR  251 (433)
T ss_pred             eEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecc-ccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcce
Confidence            888888899997  454   56777889999999999998 55666544222222    11 237889999987  7999


Q ss_pred             ceEEEeeCCC--cchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHHHHHC-CCE
Q 010008          312 GGMIFFKKDP--VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-SPEFKVYQNKVVSNCRALASRLVEL-GYK  387 (520)
Q Consensus       312 gG~I~~~~~~--~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~-~~~~~~~~~~i~~na~~l~~~L~~~-G~~  387 (520)
                      .||++++...  .....+.+.+...... ..+.+.. ...+++.+++.-. ....++..+.+.++++.+.+.|.+. |+.
T Consensus       252 iG~ii~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~  329 (433)
T PRK06855        252 CGWIEVYNADKDEVFKKYINSILNAKMI-EVCSTTL-PQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLK  329 (433)
T ss_pred             EEEEEEeCCchhhHHHHHHHHHHHhhcc-ccCCChH-HHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCee
Confidence            9999984210  0000222333222111 1122233 3333333443210 1123566677788888899999764 666


Q ss_pred             EecCCCCCeeEEEEecCCC--------------------------CCH-HHHHHHHhhcCeEEcCCCCCCCCCCCCCCEE
Q 010008          388 LVSGGSDNHLVLVDLRPMG--------------------------IDG-ARVEKILDMASITLNKNSVPGDKSALVPGGI  440 (520)
Q Consensus       388 v~~~gt~~~~~~vd~~~~g--------------------------~~~-~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~gi  440 (520)
                      +..+ ..+.++|+++...-                          .+. +.+..+|++.||.+    .||+.......++
T Consensus       330 ~~~p-~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v----~PG~~F~~~~~~~  404 (433)
T PRK06855        330 VNRT-NGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICV----VPLSSFCTELNGF  404 (433)
T ss_pred             ccCC-CeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEE----ecCCcCCCCCCce
Confidence            5433 23567788875320                          112 33556788999999    6665421123469


Q ss_pred             EEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          441 RIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       441 Rig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      ||++..     .+++++++..+.|.+++..
T Consensus       405 Rls~~~-----~~~~~i~~~~~~l~~~~~~  429 (433)
T PRK06855        405 RVTLLE-----RDEEKFEWIYQTLAEKIEE  429 (433)
T ss_pred             EEEECC-----CcHHHHHHHHHHHHHHHHH
Confidence            999754     3478999999888888763

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.92  E-value=4.9e-23  Score=212.18  Aligned_cols=313  Identities=18%  Similarity=0.184  Sum_probs=213.8

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      +.|+|..++|+  +|+.+++++...+.+.  .+|+.      .. ..+++    +.++++++++++    +|.+++|+ +
T Consensus        20 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~--~~y~~------~~-~~~lr----~~ia~~~~~~~~----~i~~~~G~~~   82 (346)
T TIGR01141        20 EVIKLNSNENPFGPPPKAKEALRAEADKL--HRYPD------PD-PAELK----QALADYYGVDPE----QILLGNGSDE   82 (346)
T ss_pred             ceEEccCCCCCCCCCHHHHHHHHHhHHHh--hcCCC------CC-HHHHH----HHHHHHhCcChH----HEEEcCCHHH
Confidence            45788777764  6889999998765322  12332      11 13343    677888998775    45567777 8


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  250 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~  250 (520)
                      ++..++.+++++||+|++++|.|+.+.        ......|.  +++.+++++ ++.+|++++++.+.+ ++++|+++.
T Consensus        83 ~l~~~~~~l~~~gd~v~~~~p~y~~~~--------~~~~~~g~--~~~~~~~~~-~~~~d~~~l~~~~~~-~~~~v~l~~  150 (346)
T TIGR01141        83 IIELLIRAFLEPGDAVLVPPPTYSMYE--------ISAKIHGA--EVVKVPLDE-DGQLDLEDILVAIDD-KPKLVFLCS  150 (346)
T ss_pred             HHHHHHHHhcCCCCEEEEcCCCHHHHH--------HHHHHcCC--eEEEeccCC-CCCCCHHHHHHhcCC-CCCEEEEeC
Confidence            888888999999999999998764321        11223454  666777764 478999999998866 899999998


Q ss_pred             CCCCC--CCCHHHHHHHHHHh--CCEEEEechhhcccccccccCCCCC-c-ccEEEeccCccc--CCCCceEEEeeCCCc
Q 010008          251 SAYPR--DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK-Y-CDVVTTTTHKSL--RGPRGGMIFFKKDPV  322 (520)
Q Consensus       251 s~~p~--~~d~~~i~~ia~~~--g~~li~D~Ah~~gli~~~~~~~p~~-~-aDiv~~S~hK~l--~GprgG~I~~~~~~~  322 (520)
                      ++||+  ..+.+++.++|+.+  |+++++|++|. ++...+.....+. . .+++++|+||++  +|+|.|++++++   
T Consensus       151 p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~-~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~---  226 (346)
T TIGR01141       151 PNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYG-EFSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANA---  226 (346)
T ss_pred             CCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchh-hhcCCccHHHHHhhCCCEEEEehhhHhhhchhhhceeeecCH---
Confidence            88887  78999999999987  99999999965 3332211000111 1 247789999997  578889999987   


Q ss_pred             chhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCCeeEEEE
Q 010008          323 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVLVD  401 (520)
Q Consensus       323 ~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~~~~vd  401 (520)
                         ++.+++.....+  .+.+ .....+...+++..  ..+++..+++.++++.+.+.|++. |+++..+  ...+++++
T Consensus       227 ---~~~~~~~~~~~~--~~~~-~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~--~g~~~~~~  296 (346)
T TIGR01141       227 ---EIIDALNKVRAP--FNLS-RLAQAAAIAALRDD--DFIEKTVEEINAERERLYDGLKKLPGLEVYPS--DANFVLIR  296 (346)
T ss_pred             ---HHHHHHHhccCC--CCCC-HHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhcCCCEECCC--cCCEEEEe
Confidence               676766543322  1222 22233323334321  135677888889999999999885 8886543  34567777


Q ss_pred             ecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHH
Q 010008          402 LRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  464 (520)
Q Consensus       402 ~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i  464 (520)
                      +..   +.+++.+.|.++||.+.    ||.. +.. ++++|+++.       +++|++++++.|
T Consensus       297 ~~~---~~~~~~~~L~~~gI~v~----~g~~f~~~-~~~iRls~~-------~~~~i~~~~~~l  345 (346)
T TIGR01141       297 FPR---DADALFEALLEKGIIVR----DLNSYPGL-PNCLRITVG-------TREENDRFLAAL  345 (346)
T ss_pred             cCC---CHHHHHHHHHHCCeEEE----eCCCcCCC-CCeEEEecC-------CHHHHHHHHHHh
Confidence            653   56778888889999995    4432 122 678999854       378999888766

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK09148 aminotransferase; Validated

Probab=99.92  E-value=8.9e-22  Score=207.32  Aligned_cols=338  Identities=13%  Similarity=0.085  Sum_probs=212.8

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCceeeecCChH
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGS  169 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~sGs  169 (520)
                      ..|+|..+++.  +++.+++++.+.+.+....+|+.   ..|.   .++.+...+++.+.+|.+  ++   -+|.+|+|+
T Consensus        31 ~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~---~~lr~aia~~~~~~~g~~~~~~---~~I~it~G~  101 (405)
T PRK09148         31 DIIDLGMGNPDLPTPQHIVDKLCETAQDPRTHRYSA---SKGI---PGLRRAQAAYYARRFGVKLNPD---TQVVATLGS  101 (405)
T ss_pred             CeEEcCCCCCCCCCCHHHHHHHHHHHcCcccCCCCC---CCCC---HHHHHHHHHHHHHHhCCCCCCC---CcEEEcCCh
Confidence            45788776653  56888888877664322233443   1222   345555556777776754  42   156679998


Q ss_pred             -HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCC-CCCCHHHHHHHhhhcCCcEEE
Q 010008          170 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILFRPKLII  247 (520)
Q Consensus       170 -~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~-~~iD~d~le~~i~~~~pklIi  247 (520)
                       +++..++.++++|||+|++++|.|.++..        .....|.  ++++++++.++ +..+++++.+...+ ++++|+
T Consensus       102 ~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~--------~~~~~g~--~v~~v~~~~~~~~~~~l~~~~~~~~~-~~~~v~  170 (405)
T PRK09148        102 KEGFANMAQAITAPGDVILCPNPSYPIHAF--------GFIMAGG--VIRSVPAEPDEEFFPALERAVRHSIP-KPIALI  170 (405)
T ss_pred             HHHHHHHHHHhcCCCCEEEEcCCCCcccHH--------HHHhcCC--EEEEEeCCCCCCCccCHHHHHhhccc-cceEEE
Confidence             89999999999999999999998865421        1233455  56666665433 34455544433334 789999


Q ss_pred             EcCCCCCC--CCCH---HHHHHHHHHhCCEEEEechhhcccccccc-cCCC--CCc---ccEEEeccCccc--CCCCceE
Q 010008          248 AGASAYPR--DFDY---PRMRQIADAVGALLMMDMAHISGLVAASV-VADP--FKY---CDVVTTTTHKSL--RGPRGGM  314 (520)
Q Consensus       248 ~~~s~~p~--~~d~---~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~~p--~~~---aDiv~~S~hK~l--~GprgG~  314 (520)
                      ++.|+||+  ..+.   ++|.++|+++|++||+|+++ ..+.+.+. .++.  ++.   ..+++.|++|++  +|.|.||
T Consensus       171 l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y-~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~  249 (405)
T PRK09148        171 VNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAY-SEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGF  249 (405)
T ss_pred             EeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccc-hhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheee
Confidence            99999997  5554   67888899999999999984 44443321 1111  111   225689999976  7899999


Q ss_pred             EEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCC
Q 010008          315 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD  394 (520)
Q Consensus       315 I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~  394 (520)
                      +++++      ++.+.+.........+.+...+.++ ..+|... ....+...+++.++++.+.+.|.+.|+.+..+ ..
T Consensus       250 ~v~~~------~~i~~l~~~~~~~~~~~~~~~q~~~-~~~L~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p-~~  320 (405)
T PRK09148        250 AVGNE------RLIAALTRVKSYLDYGAFTPIQVAA-TAALNGP-QDCIAEMRELYKKRRDVLVESFGRAGWDIPPP-AA  320 (405)
T ss_pred             eeCCH------HHHHHHHHHHHHhccCCChHHHHHH-HHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHcCCccCCC-Ce
Confidence            99977      6766665432211122222333332 2234321 12336667788889999999998888875443 23


Q ss_pred             CeeEEEEecCC--CCCHHHHH-HHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          395 NHLVLVDLRPM--GIDGARVE-KILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       395 ~~~~~vd~~~~--g~~~~~~~-~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +.++|+++...  .++..++. .+|++.||.+.    ||.. +...++++||++.      ...+++++..+.|.+++..
T Consensus       321 g~f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~----pg~~f~~~~~~~~Ri~~~------~~~~~l~~al~~l~~~l~~  390 (405)
T PRK09148        321 SMFAWAPIPEAFRHLGSLEFSKLLVEKADVAVA----PGVGFGEHGDGYVRIALV------ENEQRIRQAARNIKRFLSS  390 (405)
T ss_pred             eEEEEEECCCccCCCCHHHHHHHHHHhCCEEEe----CchhhCCCCCCeEEEEec------CCHHHHHHHHHHHHHHHHH
Confidence            45678777531  12344554 45678999994    5543 2223578999874      2367777777777777654


Q ss_pred             H
Q 010008          471 T  471 (520)
Q Consensus       471 ~  471 (520)
                      .
T Consensus       391 ~  391 (405)
T PRK09148        391 A  391 (405)
T ss_pred             H
Confidence            3

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.92  E-value=5.7e-23  Score=213.38  Aligned_cols=311  Identities=16%  Similarity=0.174  Sum_probs=215.0

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      +.|.|..+||+  +|+.+++++.+.+.+..  .||..    |   ..++.    +.+++.+|++++    +|.+++|+ +
T Consensus        30 ~~i~l~~nen~~~~~~~v~~a~~~~~~~~~--~Yp~~----g---~~~Lr----~aia~~~~~~~~----~I~vt~Gs~e   92 (366)
T PRK01533         30 SFVKLASNENPFGCSPRVLDELQKSWLDHA--LYPDG----G---ATTLR----QTIANKLHVKME----QVLCGSGLDE   92 (366)
T ss_pred             ceEEeCCCCCCCCCCHHHHHHHHHHHHhcC--cCCCC----C---HHHHH----HHHHHHhCCCcc----eEEECCCHHH
Confidence            56899999985  68899999987654321  24421    1   22333    566778899886    56678998 8


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  250 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~  250 (520)
                      ++..++.++++|||+|++++|.|.++..        .....|.  +++.++++  ++.+|++++++++++ ++|+|+++.
T Consensus        93 ~i~~~~~~l~~~gd~vlv~~P~y~~~~~--------~~~~~g~--~v~~v~~~--~~~~d~~~l~~~~~~-~~~~v~i~~  159 (366)
T PRK01533         93 VIQIISRAVLKAGDNIVTAGATFPQYRH--------HAIIEGC--EVKEVALN--NGVYDLDEISSVVDN-DTKIVWICN  159 (366)
T ss_pred             HHHHHHHHhcCCCCEEEEcCCcHHHHHH--------HHHHcCC--EEEEeecC--CCCcCHHHHHHHhCc-CCcEEEEeC
Confidence            9999999999999999999997754421        2334565  56666664  457999999998877 899999999


Q ss_pred             CCCCC--CCCHHHHHHHHHH--hCCEEEEechhhcccccccccCCCCC----c-ccEEEeccCccc--CCCCceEEEeeC
Q 010008          251 SAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK----Y-CDVVTTTTHKSL--RGPRGGMIFFKK  319 (520)
Q Consensus       251 s~~p~--~~d~~~i~~ia~~--~g~~li~D~Ah~~gli~~~~~~~p~~----~-aDiv~~S~hK~l--~GprgG~I~~~~  319 (520)
                      |+||+  .++.+++.++++.  .+.++++|++++ .+...+..+..+.    + --|++.|++|++  +|+|.||+++++
T Consensus       160 P~NPTG~~~~~~~l~~l~~~~~~~~~~iiDe~y~-~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~  238 (366)
T PRK01533        160 PNNPTGTYVNDRKLTQFIEGISENTLIVIDEAYY-EYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHE  238 (366)
T ss_pred             CCCCCCCCcCHHHHHHHHHhCCCCCEEEEEccHH-HhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCCH
Confidence            99997  6677666666553  134678899964 5543322122111    1 237889999986  789999999987


Q ss_pred             CCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeE
Q 010008          320 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF-KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLV  398 (520)
Q Consensus       320 ~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~-~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~  398 (520)
                            ++.+.+.+...+  .+. +.....+...+|+   ..++ ++..+...++++.+.+.|...|+++..+  +..++
T Consensus       239 ------~~~~~l~~~~~~--~~~-~~~~q~aa~~~l~---~~~~~~~~~~~~~~~r~~~~~~l~~~g~~~~~~--~~nf~  304 (366)
T PRK01533        239 ------ELIEKLNVVRLP--FNV-SSLAQKAATIAFG---DDEFIEEIVRVNTEGLRQYESFCKENEIPFYQS--QTNFI  304 (366)
T ss_pred             ------HHHHHHHHhcCC--CCc-CHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCC--cCcEE
Confidence                  677777654332  222 2223333333443   2334 5666777778888888888888886654  34567


Q ss_pred             EEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          399 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       399 ~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      |+.+.    +...+.+.|.++||.|..         + ++++||++.       +.+|++++.++|++++..
T Consensus       305 ~~~~~----~~~~~~~~l~~~GI~Vr~---------~-~~~iRis~~-------~~~~~~~l~~al~~~~~~  355 (366)
T PRK01533        305 FLPVE----NGGEIYEACAHAGFIIRP---------F-PNGVRITVG-------TREQNEGVISVLQQHFEN  355 (366)
T ss_pred             EEeCC----CHHHHHHHHHHCCcEEcc---------C-CCceEEeCC-------CHHHHHHHHHHHHHHHHh
Confidence            87763    356788889999999963         1 468999864       369999999999987653

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.92  E-value=5.5e-23  Score=210.79  Aligned_cols=318  Identities=18%  Similarity=0.149  Sum_probs=200.9

Q ss_pred             cCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHH
Q 010008          100 ASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT  177 (520)
Q Consensus       100 asen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~  177 (520)
                      .|||+  +++.+++++...+.. +    .  + |+..+...+++    +++++++| +.+    .+.+.+|++|+..++.
T Consensus         3 ~~~~~~~~~~~v~~a~~~~~~~-~----~--~-~~~~~~~~~l~----~~~a~~~g-~~~----~~~~~~gt~a~~~~~~   65 (338)
T cd06502           3 RSDTVTGPTPEMLEAMAAANVG-D----D--V-YGEDPTTAKLE----ARAAELFG-KEA----ALFVPSGTAANQLALA   65 (338)
T ss_pred             ccccCCCCCHHHHHHHHhcccC-C----c--c-cCCCHHHHHHH----HHHHHHhC-CCe----EEEecCchHHHHHHHH
Confidence            36765  588999999765421 1    1  2 22233344444    67889999 332    4666788899999999


Q ss_pred             hhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh------cCCcEEEEcCC
Q 010008          178 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL------FRPKLIIAGAS  251 (520)
Q Consensus       178 all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~------~~pklIi~~~s  251 (520)
                      ++++|||+|++.++.|.++.....     .....|.  +++.++.+  ++.+|+++|++++++      .++++|+++++
T Consensus        66 ~l~~~gd~v~~~~~~~~~~~~~~~-----~~~~~g~--~~~~v~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p  136 (338)
T cd06502          66 AHTQPGGSVICHETAHIYTDEAGA-----PEFLSGV--KLLPVPGE--NGKLTPEDLEAAIRPRDDIHFPPPSLVSLENT  136 (338)
T ss_pred             HhcCCCCeEEEecCcceeeecCCc-----HHHHcCc--eEEeecCC--CCcCCHHHHHHHhhccCCCcCCcceEEEEEee
Confidence            999999999999887654321110     1123454  55666554  467999999999874      26899998888


Q ss_pred             CCCC-C---CCHHHHHHHHHHhCCEEEEechhhcccc-cccccCCCC-CcccEEEeccCcccCCCCceEEEeeCCCcchh
Q 010008          252 AYPR-D---FDYPRMRQIADAVGALLMMDMAHISGLV-AASVVADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGV  325 (520)
Q Consensus       252 ~~p~-~---~d~~~i~~ia~~~g~~li~D~Ah~~gli-~~~~~~~p~-~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~  325 (520)
                      +|++ .   .++++|.++|+++|+++++|+||..+.. ..+...... .++|+++.|+||+++.|.|++++.++      
T Consensus       137 ~n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g~~~~~~~------  210 (338)
T cd06502         137 TEGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPVGAVVVGNR------  210 (338)
T ss_pred             cCCccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCccceEEECCH------
Confidence            7766 2   3577899999999999999999865432 112110111 26889999999999777666566666      


Q ss_pred             hHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCC
Q 010008          326 ELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM  405 (520)
Q Consensus       326 ~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~  405 (520)
                      ++.+++.....+ ..++.....+++.+ ++..+....+.++.+++.++++++.+.|.+.|+.+..  ...+++++.+...
T Consensus       211 ~~~~~~~~~~~~-~~~~~~~~~~~~~a-~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~~~~~v~~~~~  286 (338)
T cd06502         211 DFIARARRRRKQ-AGGGMRQSGFLAAA-GLAALENDLWLRRLRHDHEMARRLAEALEELGGLESE--VQTNIVLLDPVEA  286 (338)
T ss_pred             HHHHHHHHHHHH-hCCChhhHHHHHHH-HHHHhcCchHHHHHHHHHHHHHHHHHHHHhcCCCccc--ccCCeEEEecCCc
Confidence            566665443211 11222222222211 2222223346667788899999999999988875433  2345566654321


Q ss_pred             CCCHHHHHHHHh---hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          406 GIDGARVEKILD---MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       406 g~~~~~~~~~L~---~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      ......+.+.|.   +.||.+...         ..+.||++.+..++    ++|++++++.+++
T Consensus       287 ~~~~~~l~~~l~~~~~~gi~~~~~---------~~~~lRi~~~~~~~----~~~i~~~~~~l~~  337 (338)
T cd06502         287 NAVFVELSKEAIERRGEGVLFYAW---------GEGGVRFVTHWDTT----EEDVDELLSALKA  337 (338)
T ss_pred             cHHHHHHHHHHHHhhhCCEEEEec---------CCCeEEEEeecCCC----HHHHHHHHHHHhc
Confidence            111112222222   579888431         12689998876544    7999999988764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.91  E-value=3.3e-22  Score=209.80  Aligned_cols=331  Identities=17%  Similarity=0.140  Sum_probs=211.7

Q ss_pred             hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC----CCCCceeeecC
Q 010008           93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD----ENKWGVNVQPL  166 (520)
Q Consensus        93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~----~~~~~~~V~~~  166 (520)
                      ...|+|..+++.  +|+.+.+++.+.+...  ..|+.   ..|   ..++.+...+++.+.+|.+    ++   -+|.++
T Consensus        28 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~--~~Y~~---~~G---~~~lr~aia~~~~~~~~~~~~~~~~---~~i~it   96 (393)
T TIGR03538        28 KPPIALSIGEPKHPTPAFVLEALRENLHGL--STYPT---TKG---LPELRQAIARWLERRFDLPTGVDPE---RHVLPV   96 (393)
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHhhcc--CCCCC---CCC---CHHHHHHHHHHHHHhhCCcccCCCC---ceEEEC
Confidence            467888877764  6788999998765421  23432   112   2345555557777777654    32   156778


Q ss_pred             ChH-HHHHHHHHhhCCCCCE--EEEcCCCCCccccccccccccccccccceEEEEEcccCCCC-CCCCHHHHHHHhhhcC
Q 010008          167 SGS-PANFEVYTAILKPHDR--IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILFR  242 (520)
Q Consensus       167 sGs-~A~~~~l~all~pGD~--Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~-~~iD~d~le~~i~~~~  242 (520)
                      +|+ +|+..++.++++|||.  |++++|.|.++.        ......|.  +++.+++++++ +.+|++++++++.+ +
T Consensus        97 ~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~--------~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~~~~-~  165 (393)
T TIGR03538        97 NGTREALFAFAQAVINPGQAPLVVMPNPFYQIYE--------GAALLAGA--EPYFLNCTAENGFLPDFDAVPESVWR-R  165 (393)
T ss_pred             CCcHHHHHHHHHHHcCCCCcceEEecCCCCcchH--------HHHHhcCC--eEEEeeccccCCCCCCHHHHHHHHhh-c
Confidence            988 8999999999999996  888888765432        12334454  66777776443 57899999998877 8


Q ss_pred             CcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccc--cCCCC---C--c---c--cEEEeccCc
Q 010008          243 PKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV--VADPF---K--Y---C--DVVTTTTHK  305 (520)
Q Consensus       243 pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~--~~~p~---~--~---a--Div~~S~hK  305 (520)
                      +|+|+++.|+||+  .++   +++|.++|+++|++||+|+++ ..+.+.+.  .++.+   .  +   .  -+++.|++|
T Consensus       166 ~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK  244 (393)
T TIGR03538       166 CQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECY-SELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSK  244 (393)
T ss_pred             ceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcch-hhcccCCCCCCcCHHHhcccccccccccEEEEecchh
Confidence            9999999999997  454   778888899999999999984 44443321  11111   0  1   1  178899999


Q ss_pred             c--cCCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Q 010008          306 S--LRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE  383 (520)
Q Consensus       306 ~--l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~  383 (520)
                      .  ++|.|.||+++++      ++.+++.........+.+...+.+++ .++..  ....+...+++.++++.+.+.|.+
T Consensus       245 ~~~~~GlRvG~~i~~~------~l~~~~~~~~~~~~~~~~~~~q~~~~-~~l~~--~~~~~~~~~~~~~~~~~~~~~L~~  315 (393)
T TIGR03538       245 RSNLPGLRSGFVAGDA------EILKAFLRYRTYHGCAMPIPTQLASI-AAWND--EQHVRENRALYREKFAAVLEILGQ  315 (393)
T ss_pred             hcCCcccceEEEecCH------HHHHHHHHHHHhhccCcCHHHHHHHH-HHhcC--hHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5  4899999999987      66666544322111222233333322 23321  223466677788888888888876


Q ss_pred             CCCEEecCCCCCeeEEEEecCCCCCHHHHHHH-HhhcCeEEcCCCCCCCC---CCCCCCEEEEccCCccccCCCHHHHHH
Q 010008          384 LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKI-LDMASITLNKNSVPGDK---SALVPGGIRIGSPAMTTRGFSEKEFVA  459 (520)
Q Consensus       384 ~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~-L~~~gI~v~~~~~Pg~~---~~~~~~giRig~~~~tt~g~~~~d~~~  459 (520)
                      . +.+..+ ....++|+++.   .+..++.+. ++++||.+..+...+..   .....+++||+...      +++++++
T Consensus       316 ~-~~~~~p-~gg~f~~~~~~---~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~------~~~~l~~  384 (393)
T TIGR03538       316 V-LDLELP-DAGFYLWPKVP---GDDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVA------PLEECVE  384 (393)
T ss_pred             h-CcccCC-CeeEEEEEECC---CCHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecC------CHHHHHH
Confidence            4 333322 23567788875   245555554 57899999543211110   12235689998642      3677887


Q ss_pred             HHHHHHH
Q 010008          460 IADFIHE  466 (520)
Q Consensus       460 la~~i~~  466 (520)
                      ..+.|.+
T Consensus       385 ~l~~l~~  391 (393)
T TIGR03538       385 AAERIRS  391 (393)
T ss_pred             HHHHHHH
Confidence            7777765

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.91  E-value=1.6e-22  Score=217.24  Aligned_cols=342  Identities=14%  Similarity=0.114  Sum_probs=213.4

Q ss_pred             ccceEecCCCCCh-HHHHHHHhhhhhc----c-CCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC----CCCCCCceee
Q 010008           94 KSLELIASENFTS-RAVMEAVGSCLTN----K-YSEGLPGKRYYGGNEYIDELETLCQKRALAAFN----LDENKWGVNV  163 (520)
Q Consensus        94 ~~i~Liasen~~~-~~V~ea~~s~l~~----~-y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg----~~~~~~~~~V  163 (520)
                      ..|+|...||+.. +.+.+.+......    . -...|+..-+|+......++.+...+++.+.+|    ++++    +|
T Consensus        47 g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe----~I  122 (496)
T PLN02376         47 GIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPE----RV  122 (496)
T ss_pred             ceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChh----hE
Confidence            4589999999762 2223333332111    1 001233333344333345666666678888877    6665    56


Q ss_pred             ecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccc-cccceEEEEEcccCC-CCCCCCHHHHHHHhh-
Q 010008          164 QPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS-GTSIYFESMPYRLDE-STGLVDYDMLEKTAI-  239 (520)
Q Consensus       164 ~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~-~~g~~~~~v~~~~d~-~~~~iD~d~le~~i~-  239 (520)
                      .+++|+ +|+..++.++++|||.|++++|.|+++..        .+. ..|.  ++++++++. +++.+|++++++++. 
T Consensus       123 vit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~--------~~~~~~G~--~vv~v~~~~~~~~~~~~~~le~a~~~  192 (496)
T PLN02376        123 VMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDR--------DLRWRTGV--EIIPVPCSSSDNFKLTVDAADWAYKK  192 (496)
T ss_pred             EEccchHHHHHHHHHHhCCCCCEEEECCCCccchHH--------HHHhhCCC--EEEEEeCCCCccCcCCHHHHHHHHHH
Confidence            678888 89999999999999999999998876531        122 2454  667777754 347899999976532 


Q ss_pred             ----hcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccc-cCCC--C-C-----c--cc--
Q 010008          240 ----LFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VADP--F-K-----Y--CD--  297 (520)
Q Consensus       240 ----~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~~p--~-~-----~--aD--  297 (520)
                          ..++|+|+++.|+||+  ..+   +++|.++|+++|++||+|+++ ..+++.+. +++.  + .     .  .+  
T Consensus       193 a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY-~~~~f~~~~~~si~~l~~~~~~~~~~~~~v  271 (496)
T PLN02376        193 AQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIY-AATVFAGGDFVSVAEVVNDVDISEVNVDLI  271 (496)
T ss_pred             HHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCc-cccccCCCCcccHHHhhccccccccCCCeE
Confidence                1378999999999997  555   567788899999999999994 45444331 1110  1 0     0  13  


Q ss_pred             EEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchh-HH----HHHHH
Q 010008          298 VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF-KV----YQNKV  370 (520)
Q Consensus       298 iv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~-~~----~~~~i  370 (520)
                      +++.|++|.|  +|.|.|+++++++     .+.+.+......+  ..+.. ...+++..|.   ...| +.    ..+++
T Consensus       272 ~vv~S~SK~~glpGlRvG~li~~~~-----~l~~~~~~~~~~~--~vs~~-~Q~a~~~~L~---d~~~~~~~l~~~r~~l  340 (496)
T PLN02376        272 HIVYSLSKDMGLPGFRVGIVYSFND-----SVVSCARKMSSFG--LVSSQ-TQLMLASMLS---DDQFVDNFLMESSRRL  340 (496)
T ss_pred             EEEEeccccCCCCcceEEEEEECCH-----HHHHHHHHHhhcC--CCCHH-HHHHHHHHhC---ChhHHHHHHHHHHHHH
Confidence            3578999986  7999999999653     4544433221111  11222 2222222232   2233 33    35667


Q ss_pred             HHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCC-----CH-HHHHH-HHhhcCeEEcCCCCCCCC-CCCCCCEEEE
Q 010008          371 VSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGI-----DG-ARVEK-ILDMASITLNKNSVPGDK-SALVPGGIRI  442 (520)
Q Consensus       371 ~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~-----~~-~~~~~-~L~~~gI~v~~~~~Pg~~-~~~~~~giRi  442 (520)
                      .++.+.+.+.|.+.|+.+..+ ....++|++++....     .. .++.+ ++++.||.+.    ||.. ....++++||
T Consensus       341 ~~r~~~l~~~L~~~gi~~~~~-~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~----pGs~F~~~~~g~~Ri  415 (496)
T PLN02376        341 GIRHKVFTTGIKKADIACLTS-NAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVS----PGSSFRCTEPGWFRI  415 (496)
T ss_pred             HHHHHHHHHHHHHCCCcccCC-CceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEe----CccccCCCCCCEEEE
Confidence            777888888898888887654 234678889853211     11 23333 4566899994    5543 2224689999


Q ss_pred             ccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          443 GSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       443 g~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      ++..     +.++++++..+.|.+++...
T Consensus       416 ~fa~-----~~~~~l~~al~rl~~~l~~~  439 (496)
T PLN02376        416 CFAN-----MDDDTLHVALGRIQDFVSKN  439 (496)
T ss_pred             EeeC-----CCHHHHHHHHHHHHHHHHHh
Confidence            8753     34688888888888887643

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.91  E-value=5.8e-22  Score=206.17  Aligned_cols=316  Identities=17%  Similarity=0.150  Sum_probs=209.3

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC----
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  180 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all----  180 (520)
                      ..+.+.+++...+...  .|.++  +|.+.   ..+++.+++++++++|+++++   .+...+|++++..++.++.    
T Consensus        32 ~~~~~~~a~~~~~~~~--~~~~~--~~~~~---~~~~~~~~~~la~~~g~~~~~---~~~~~g~~~~~~~~~~~~~~~~~  101 (373)
T TIGR03812        32 PHPIAVKAYDMFIETN--LGDPG--LFPGT---KKIEEEVVGSLGNLLHLPDAY---GYIVSGGTEANIQAVRAAKNLAR  101 (373)
T ss_pred             chHHHHHHHHHHhhcC--CCCcc--cCccH---HHHHHHHHHHHHHHhCCCCCC---eEEeccHHHHHHHHHHHHHHHHh
Confidence            4455677776654432  34443  23332   345556779999999998642   1333455588887776653    


Q ss_pred             --CCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--C
Q 010008          181 --KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--D  256 (520)
Q Consensus       181 --~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~  256 (520)
                        ++||+|+++++.|.+.   .     +.+...|.  +++.++++ +++.+|++++++++++ ++..+++..+++++  .
T Consensus       102 ~~~~g~~vl~~~~~h~~~---~-----~~~~~~G~--~~~~v~~~-~~~~~d~~~l~~~l~~-~~~~vv~~~~~~~tG~~  169 (373)
T TIGR03812       102 EEKRTPNIIVPESAHFSF---E-----KAAEMLGL--ELRYAPLD-EDYTVDVKDVEDLIDD-NTIGIVGIAGTTELGQI  169 (373)
T ss_pred             ccCCCcEEEECCcchHHH---H-----HHHHHcCC--eEEEEeeC-CCCCcCHHHHHHHHhh-CcEEEEEECCCCCCCcc
Confidence              4789999988765431   1     12344565  55555565 4678999999999977 66444433344444  7


Q ss_pred             CCHHHHHHHHHHhCCEEEEechhhcccccc---ccc--CCCC--CcccEEEeccCcccCCC-Cce-EEEeeCCCcchhhH
Q 010008          257 FDYPRMRQIADAVGALLMMDMAHISGLVAA---SVV--ADPF--KYCDVVTTTTHKSLRGP-RGG-MIFFKKDPVLGVEL  327 (520)
Q Consensus       257 ~d~~~i~~ia~~~g~~li~D~Ah~~gli~~---~~~--~~p~--~~aDiv~~S~hK~l~Gp-rgG-~I~~~~~~~~~~~l  327 (520)
                      .|+++|.++|+++|+++++|+||..+.+..   +..  ...+  .++|++++|+|||+.+| ++| +++.++      ++
T Consensus       170 ~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~------~~  243 (373)
T TIGR03812       170 DDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSK------SY  243 (373)
T ss_pred             CCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCH------HH
Confidence            899999999999999999999987554321   111  1111  26899999999986544 445 444454      55


Q ss_pred             HHhhcccCCCC--------CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEE
Q 010008          328 ESAINNAVFPG--------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVL  399 (520)
Q Consensus       328 ~~~i~~~~~p~--------~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~  399 (520)
                      .+.+... .|.        .+|+++...++++..+++.+...++++..++..+++++|.+.|++.|+..+.++ ..+++.
T Consensus       244 ~~~l~~~-~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~v~  321 (373)
T TIGR03812       244 LKYLSVD-APYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIGFEPVIEP-VLNIVA  321 (373)
T ss_pred             Hhhhccc-CcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEcCC-CceEEE
Confidence            5544321 121        125666667778878888776667788889999999999999999887654332 234455


Q ss_pred             EEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          400 VDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       400 vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      +.+.    +...+.+.|.+.||.+....        .+..||++++..+    +++|++++++.|++
T Consensus       322 ~~~~----~~~~v~~~L~~~gi~v~~~~--------~~~~iRis~~~~~----t~edid~l~~~L~~  372 (373)
T TIGR03812       322 FEVD----DPEEVRKKLRDRGWYVSVTR--------CPKALRIVVMPHV----TREHIEEFLEDLKE  372 (373)
T ss_pred             EEeC----CHHHHHHHHHHCCceeccCC--------CCCEEEEEEECCC----CHHHHHHHHHHHhh
Confidence            4432    34678888988999985421        2468999887554    48999999999865

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.91  E-value=3.5e-22  Score=207.81  Aligned_cols=319  Identities=17%  Similarity=0.104  Sum_probs=216.4

Q ss_pred             cceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HH
Q 010008           95 SLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PA  171 (520)
Q Consensus        95 ~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A  171 (520)
                      .|+|..+|+.  +++.+++++...+...  .+|+..      . ...++    +.+++.++++++    +|.+++|+ ++
T Consensus        34 ~~~l~~~~~~~~~~~~~~~a~~~~~~~~--~~Y~~~------~-~~~Lr----~~ia~~~~~~~~----~I~it~G~~~~   96 (369)
T PRK08153         34 RARIGANESGFGPSPSVIAAMREAAAEI--WKYGDP------E-NHDLR----HALAAHHGVAPE----NIMVGEGIDGL   96 (369)
T ss_pred             eeEecCCCCCCCCCHHHHHHHHHHHHHh--hcCCCC------c-cHHHH----HHHHHHhCCCHH----HEEEcCCHHHH
Confidence            3688888874  6889999988765322  234321      1 23444    566777898875    67779999 78


Q ss_pred             HHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCC
Q 010008          172 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS  251 (520)
Q Consensus       172 ~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s  251 (520)
                      +..++.++++|||.|++.+|.|.+...        .+...|.  +++.++++.  ..+|++++++.+...++|+|+++.|
T Consensus        97 l~~~~~~~~~~gd~vlv~~p~y~~~~~--------~~~~~g~--~~~~vp~~~--~~~~~~~l~~~~~~~~~~~i~l~~P  164 (369)
T PRK08153         97 LGLIVRLYVEPGDPVVTSLGAYPTFNY--------HVAGFGG--RLVTVPYRD--DREDLDALLDAARRENAPLVYLANP  164 (369)
T ss_pred             HHHHHHHhcCCCCEEEECCCcchHHHH--------HHHHcCC--eEEEeeCCC--CCCCHHHHHHHhcccCCcEEEEeCC
Confidence            888888889999999999987754421        1223454  556666652  3689999987776558999999889


Q ss_pred             CCCC--CCCHHHHHHHHHHh--CCEEEEechhhcccccccccCCCCC--c-ccEEEeccCccc--CCCCceEEEeeCCCc
Q 010008          252 AYPR--DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK--Y-CDVVTTTTHKSL--RGPRGGMIFFKKDPV  322 (520)
Q Consensus       252 ~~p~--~~d~~~i~~ia~~~--g~~li~D~Ah~~gli~~~~~~~p~~--~-aDiv~~S~hK~l--~GprgG~I~~~~~~~  322 (520)
                      +||+  ..+.+++.++++..  |++||+|+++ ..+...+... ++.  . --+++.|++|++  +|.|.||+++++   
T Consensus       165 ~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y-~~~~~~~~~~-~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~---  239 (369)
T PRK08153        165 DNPMGSWHPAADIVAFIEALPETTLLVLDEAY-CETAPAGAAP-PIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAP---  239 (369)
T ss_pred             CCCCCCCCCHHHHHHHHHhCCCCcEEEEeCch-hhhcCcccch-hhhhcCCCEEEEecchHhccCcchheeeeecCH---
Confidence            9987  77887777777654  8999999994 3444333211 221  1 127789999987  689999999987   


Q ss_pred             chhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEE
Q 010008          323 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVD  401 (520)
Q Consensus       323 ~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~-~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd  401 (520)
                         ++.+.+.....+  .+. +....++...+|+   ... .++..+.+.++++.+.+.|++.|+.+...  ..++++++
T Consensus       240 ---~~~~~l~~~~~~--~~~-s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~p~--~~~f~~~~  308 (369)
T PRK08153        240 ---GTIKAFDKVRNH--FGM-NRIAQAAALAALK---DQAYLAEVVGKIAAARDRIAAIARANGLTPLPS--ATNFVAID  308 (369)
T ss_pred             ---HHHHHHHHhhcC--CCC-CHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCCCccCCC--cCcEEEEE
Confidence               666665543322  222 3333333333453   223 36667778888888989898888865433  34567777


Q ss_pred             ecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          402 LRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       402 ~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +.........+.+.|.+.||.+..   |+..  ..++++||++.       +++|++++.+.+++++..
T Consensus       309 ~~~~~~~a~~l~~~l~~~Gi~v~~---p~~~--~~~~~iRis~~-------~~~~~~~~~~al~~~~~~  365 (369)
T PRK08153        309 CGRDGAFARAVLDGLIARDIFVRM---PGVA--PLDRCIRVSCG-------PDEELDLFAEALPEALEA  365 (369)
T ss_pred             CCCCcccHHHHHHHHHHCCeEEee---CCCC--CCCCeEEEecC-------CHHHHHHHHHHHHHHHHH
Confidence            643333456777778889999942   4331  13568999864       379999999999988764

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.91  E-value=4.6e-22  Score=209.70  Aligned_cols=343  Identities=14%  Similarity=0.083  Sum_probs=216.6

Q ss_pred             hccceEecCCC------CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceeee
Q 010008           93 FKSLELIASEN------FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQ  164 (520)
Q Consensus        93 ~~~i~Liasen------~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V~  164 (520)
                      .+.|+|..++.      .+|+.+.+++...+......+|+.   ..|.   .++.+...+++.+.+|.  +++    +|.
T Consensus        32 ~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~---~~G~---~~lr~aia~~~~~~~g~~~~~~----~I~  101 (409)
T PLN00143         32 RLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFNSYAP---TGGI---LPARRAIADYLSNDLPYQLSPD----DVY  101 (409)
T ss_pred             CceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCCCCCCC---CCCC---HHHHHHHHHHHHhhcCCCCCHh----hEE
Confidence            46688876553      578889999887776432223421   1122   24444555677666654  454    566


Q ss_pred             cCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC-CCCCCCHHHHHHHhhhcC
Q 010008          165 PLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFR  242 (520)
Q Consensus       165 ~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-~~~~iD~d~le~~i~~~~  242 (520)
                      +++|+ +|+..++.++++|||.|++++|.|.++..        .....|.  +++.+++++ +++.+|++++++++++ +
T Consensus       102 it~G~~~al~~~~~~l~~~gd~v~v~~P~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~~~~-~  170 (409)
T PLN00143        102 LTLGCKHAAEIIIKVLARPEANILLPRPGFPDVET--------YAIFHHL--EIRHFDLLPEKGWEVDLDAVEAIADE-N  170 (409)
T ss_pred             EecChHHHHHHHHHHHcCCCCEEEEcCCCCcCHHH--------HHHHcCC--EEEEEeccCCCCCcCCHHHHHHhccc-C
Confidence            78888 89999999999999999999998765421        2234454  556666643 3467999999998876 7


Q ss_pred             CcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC----c-ccEEEeccCcc--cCCC
Q 010008          243 PKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----Y-CDVVTTTTHKS--LRGP  310 (520)
Q Consensus       243 pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~----~-aDiv~~S~hK~--l~Gp  310 (520)
                      +++++++.|+||+  .++   +++|.++|+++|+++|+|++ |..+++.+....++.    . .-+++.|++|+  ++|+
T Consensus       171 ~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~-Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGl  249 (409)
T PLN00143        171 TIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEV-YGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGW  249 (409)
T ss_pred             CEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEcc-ccccccCCCCCcchhhhcccCcEEEEccchhhcCCCcc
Confidence            8888888899997  555   67788889999999999999 556665432212221    1 12788999998  4899


Q ss_pred             CceEEEeeC-CC-cchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEE
Q 010008          311 RGGMIFFKK-DP-VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL  388 (520)
Q Consensus       311 rgG~I~~~~-~~-~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v  388 (520)
                      |.||+++++ +. ....+..+.+.....+.. ..+.. ..++++.+|+......+++..+++.++++.+.+.|.+.+...
T Consensus       250 RvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~-~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~  327 (409)
T PLN00143        250 GLGWLVTCDPSGLLQICEIADSIKKALNPAP-FPPTF-IQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCIM  327 (409)
T ss_pred             ceEEEEeeCchhhhhhHHHHHHHHHHHhccC-CCCch-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            999999943 20 000011222222221111 11222 233333344321112457778888888888888887754322


Q ss_pred             -ecCCCCCeeEEEEecCC---CC-CH-HHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHH
Q 010008          389 -VSGGSDNHLVLVDLRPM---GI-DG-ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIAD  462 (520)
Q Consensus       389 -~~~gt~~~~~~vd~~~~---g~-~~-~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~  462 (520)
                       ........++|+++...   ++ +. +.+.++|.+.||.+    .||... ..++++||+..      .+++++++..+
T Consensus       328 ~~~~p~gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v----~pg~~f-~~~~~iRi~~~------~~~~~l~~al~  396 (409)
T PLN00143        328 CPQKAEGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLII----LPGVTV-GLKNWLRITFA------VEQSSLEDGLG  396 (409)
T ss_pred             CCCCCCeeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEE----eCcccc-CCCCeEEEEEc------CCHHHHHHHHH
Confidence             22222356778888531   22 33 34556778999999    455431 13578999864      23688888888


Q ss_pred             HHHHHHHH
Q 010008          463 FIHEGVEI  470 (520)
Q Consensus       463 ~i~~~l~~  470 (520)
                      .|.++++.
T Consensus       397 rl~~~l~~  404 (409)
T PLN00143        397 RLKSFCGR  404 (409)
T ss_pred             HHHHHHHH
Confidence            88877653

>PLN02721 threonine aldolase

Probab=99.91  E-value=4.7e-22  Score=205.11  Aligned_cols=324  Identities=18%  Similarity=0.177  Sum_probs=205.3

Q ss_pred             cceEecCCC-CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHH
Q 010008           95 SLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  173 (520)
Q Consensus        95 ~i~Liasen-~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~  173 (520)
                      .++|..+++ ++++.+++++...-..      ....||.  +..+++|    +.+++++|.+.     .+.+++|++++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~a~~~~~~~------~~~~~~~--~~~~~l~----~~la~~~~~~~-----~~~~~~Gs~a~~   69 (353)
T PLN02721          7 VVDLRSDTVTKPTDAMRAAMANAEVD------DDVLGYD--PTALRLE----EEMAKIFGKEA-----ALFVPSGTMGNL   69 (353)
T ss_pred             hhhhhcccccCCCHHHHHHHHhccCC------CcccCCC--HHHHHHH----HHHHHHhCCce-----eEEecCccHHHH
Confidence            356666654 4678899988643011      1112332  2355666    67888999875     244578998888


Q ss_pred             HHHHhhCC-CCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh------cCCcEE
Q 010008          174 EVYTAILK-PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL------FRPKLI  246 (520)
Q Consensus       174 ~~l~all~-pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~------~~pklI  246 (520)
                      +++.++++ |||+|++.+++|.+.+..+.     .....|.  +++.++.+ +++.+|+|++++.+++      .++|+|
T Consensus        70 ~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v  141 (353)
T PLN02721         70 ISVLVHCDVRGSEVILGDNSHIHLYENGG-----ISTLGGV--HPRTVKNN-EDGTMDLDAIEAAIRPKGDDHFPTTRLI  141 (353)
T ss_pred             HHHHHHccCCCCeEEEcCccceehhcccc-----hhhhcCc--eeEecCCC-cCCCcCHHHHHHHHHhccCCCCCcceEE
Confidence            88888887 99999999987532211100     1223343  66666665 4578999999999973      178988


Q ss_pred             EEcC-CCCCC--CCC---HHHHHHHHHHhCCEEEEechhhccccc-ccccCCCC-CcccEEEeccCcccCCCCceEEEee
Q 010008          247 IAGA-SAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVA-ASVVADPF-KYCDVVTTTTHKSLRGPRGGMIFFK  318 (520)
Q Consensus       247 i~~~-s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~-~~~~~~p~-~~aDiv~~S~hK~l~GprgG~I~~~  318 (520)
                      +++. +++|+  ..|   +++|.++|+++|+++++|++|..+... .+..+..+ .++|.++.|+||++++|.||+++.+
T Consensus       142 ~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~  221 (353)
T PLN02721        142 CLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPVGSVIVGS  221 (353)
T ss_pred             EEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCceeeEEecC
Confidence            8864 56654  344   789999999999999999997654321 12211111 2688889999999988877666666


Q ss_pred             CCCcchhhHHHhhcccCCCCCCCCChH-HHHHHHH-HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEE-ecCCCC
Q 010008          319 KDPVLGVELESAINNAVFPGLQGGPHN-HTIGGLA-VCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKL-VSGGSD  394 (520)
Q Consensus       319 ~~~~~~~~l~~~i~~~~~p~~~g~p~~-~~iaala-~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v-~~~gt~  394 (520)
                      +      ++.+.+...... ..+++.. ...++.+ .+++.     ..+..++..++++.+.+.|.+. |+++ +.+ ..
T Consensus       222 ~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~  288 (353)
T PLN02721        222 K------SFIRKAKRLRKT-LGGGMRQVGVLAAAALVALQE-----NVPKLEDDHKKAKLLAEGLNQIKGLRVNVAA-VE  288 (353)
T ss_pred             H------HHHHhHHHHHHh-cCCCeehhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhCCCcEEecCC-cc
Confidence            6      565544322111 1112111 1111111 12322     1223445567788899999885 7765 333 23


Q ss_pred             CeeEEEEecC-CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          395 NHLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       395 ~~~~~vd~~~-~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      .+++++++.. .+.+...+.+.|.+.||.+.    |+     .+.+||++++..    .+++|++++++.|++++.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~----~~-----~~~~lR~~~~~~----~~~~~i~~~~~~l~~~~~  351 (353)
T PLN02721        289 TNIVYFDITDGSRITAEKLCKSLEEHGVLLM----PG-----NSSRIRVVTHHQ----ISDSDVQYTLSCFQQAAL  351 (353)
T ss_pred             ceEEEEEccCCccccHHHHHHHHHhCCcEEe----cC-----CCceEEEEecCc----CCHHHHHHHHHHHHHHhh
Confidence            4566777643 12467788889999999995    33     246899987533    458999999999988653

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.91  E-value=2e-22  Score=208.82  Aligned_cols=314  Identities=19%  Similarity=0.168  Sum_probs=214.7

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      +.|+|..++|+  +++.|++++...+.. . ..||.       ....+++    +.++++++++++    +|.+++|+ +
T Consensus        30 ~~i~l~~n~~~~~~~~~v~~a~~~~~~~-~-~~~p~-------~g~~~lr----~~ia~~~~~~~~----~i~~t~G~~~   92 (359)
T PRK03158         30 KIVKLASNENPYGPSPKVKEAIAAHLDE-L-ALYPD-------GYAPELR----TKVAKHLGVDEE----QLLFGAGLDE   92 (359)
T ss_pred             ceEEecCCCCCCCCCHHHHHHHHHHHHH-h-hcCCC-------CcHHHHH----HHHHHHhCCCHH----HEEECCCHHH
Confidence            55788777764  578899998776542 1 11222       1123343    567778898875    56678888 8


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  250 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~  250 (520)
                      ++..++.+++++||+|++++|.|++...        .....|.  +++.++++  ++.+|++++++.+++ ++++++++.
T Consensus        93 ~l~~~~~~~~~~gd~v~~~~p~y~~~~~--------~~~~~g~--~~~~~~~~--~~~~d~~~l~~~~~~-~~~~v~i~~  159 (359)
T PRK03158         93 VIQMISRALLNPGTNTVMAEPTFSQYRH--------NAIIEGA--EVREVPLK--DGGHDLEAMLKAIDE-QTKIVWICN  159 (359)
T ss_pred             HHHHHHHHHhCCCCEEEEcCCCHHHHHH--------HHHHcCC--eEEEEecC--CCCcCHHHHHHhcCC-CCCEEEEeC
Confidence            8888888999999999999998754321        2233454  55566665  467999999998877 899999888


Q ss_pred             CCCCC--CCCHHHHHHHHHH--hCCEEEEechhhcccccccccCCCCC-----cccEEEeccCccc--CCCCceEEEeeC
Q 010008          251 SAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK-----YCDVVTTTTHKSL--RGPRGGMIFFKK  319 (520)
Q Consensus       251 s~~p~--~~d~~~i~~ia~~--~g~~li~D~Ah~~gli~~~~~~~p~~-----~aDiv~~S~hK~l--~GprgG~I~~~~  319 (520)
                      |+||+  ..+.+++.++++.  +|+++|+|+++. .+...+..+.++.     ...+++.|++|++  +|.|.||+++++
T Consensus       160 p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~  238 (359)
T PRK03158        160 PNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYY-EYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASE  238 (359)
T ss_pred             CCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchH-hhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCH
Confidence            99987  7789999999887  599999999954 3333322222211     1347889999987  589999999987


Q ss_pred             CCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeE
Q 010008          320 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF-KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLV  398 (520)
Q Consensus       320 ~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~-~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~  398 (520)
                            ++.+.+.....+  .+.+...+.+ ...+++   ...+ ++..+...++++.+.+.|.+.|+.+..++  ..++
T Consensus       239 ------~~~~~~~~~~~~--~~~~~~~q~~-~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--g~~i  304 (359)
T PRK03158        239 ------ELIEKLNIARPP--FNTTRIAQYA-AIAALE---DQAFLKECVEKNAEGLEQYYAFCKEYGLFYYPSQ--TNFI  304 (359)
T ss_pred             ------HHHHHHHHhcCC--CCCCHHHHHH-HHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCCCeeCCCc--CcEE
Confidence                  677766554322  2333333333 333443   2233 55566677778888888888888776443  3466


Q ss_pred             EEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          399 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       399 ~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      |+++.   .+..++.+.|.+.||.+.    ||+... .++++||++.       +.+|++++.+.|+++
T Consensus       305 ~~~~~---~~~~~~~~~l~~~gv~v~----~g~~f~-~~~~iRi~~~-------~~~~~~~l~~al~~~  358 (359)
T PRK03158        305 FVDTG---RDANELFEALLKKGYIVR----SGAALG-FPTGVRITIG-------LKEQNDKIIELLKEL  358 (359)
T ss_pred             EEECC---CCHHHHHHHHHHCCeEEe----eCCCCC-CCCeEEEecC-------CHHHHHHHHHHHHHh
Confidence            77663   356777788888999995    443311 2578999854       379999999999875

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.91  E-value=2.1e-22  Score=213.87  Aligned_cols=275  Identities=15%  Similarity=0.157  Sum_probs=188.7

Q ss_pred             eeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh
Q 010008          162 NVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL  240 (520)
Q Consensus       162 ~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~  240 (520)
                      +|.+++|+ +|+..++.++++|||.|++.+|.|.++..        .+...|.  +++.++++. + .+|+++++++++.
T Consensus       143 ~Iiit~G~~~al~~~~~~l~~pgd~Vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~~~-~-g~~~~~l~~~~~~  210 (431)
T PRK15481        143 EIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSIN--------MLRYAGF--SASPVSVDA-E-GMQPEKLERALAQ  210 (431)
T ss_pred             eEEEecCcHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH--------HHHHcCC--eEEeeccCC-C-CCCHHHHHHHHhc
Confidence            56778998 89999999999999999999998765531        2344565  667777763 2 4899999999877


Q ss_pred             cCCcEEEEc-CCCCCC--CCCHH---HHHHHHHHh-CCEEEEechhhcccccccccCCCCCc---ccEEEeccCccc-CC
Q 010008          241 FRPKLIIAG-ASAYPR--DFDYP---RMRQIADAV-GALLMMDMAHISGLVAASVVADPFKY---CDVVTTTTHKSL-RG  309 (520)
Q Consensus       241 ~~pklIi~~-~s~~p~--~~d~~---~i~~ia~~~-g~~li~D~Ah~~gli~~~~~~~p~~~---aDiv~~S~hK~l-~G  309 (520)
                       ++|+++++ .|+||+  .++.+   +|.++|+++ +++||+|++ |..+...+ ...++..   --+++.|++|++ +|
T Consensus       211 -~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~-Y~~~~~~~-~~~~~~~~~~~vi~~~SfSK~~~~G  287 (431)
T PRK15481        211 -GARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDH-FALLSSSP-YHSVIPQTTQRWALIRSVSKALGPD  287 (431)
T ss_pred             -CCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCc-hhhhccCC-CCCCCcCCCCCEEEEeeeccccCCC
Confidence             89998887 899997  56654   889999999 999999998 44444322 1222221   227889999987 78


Q ss_pred             CCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHHHHHCCCEE
Q 010008          310 PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-SPEFKVYQNKVVSNCRALASRLVELGYKL  388 (520)
Q Consensus       310 prgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~-~~~~~~~~~~i~~na~~l~~~L~~~G~~v  388 (520)
                      +|.||++.++      ++.+.+.........+.+.. ...+++.+|+.-. ....++..+.+.++++.+.+.|.+.|+.+
T Consensus       288 lRiG~~i~~~------~~~~~~~~~~~~~~~~~s~~-~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~~~~~  360 (431)
T PRK15481        288 LRLAFVASDS------ATSARLRLRLNSGTQWVSHL-LQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQYGIAI  360 (431)
T ss_pred             ceeEEEeCCH------HHHHHHHHHHhccccCCCHH-HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            8889999987      66666654322222222222 3333333454210 01135567788888999999998888876


Q ss_pred             ecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          389 VSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       389 ~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      ..+ ..+.++|+++..   +..++.+.|.++||.+..+...+.  ....+++||++..     .+++++++.++.|.+++
T Consensus       361 ~~p-~gg~f~~~~l~~---~~~~~~~~l~~~gV~v~pg~~f~~--~~~~~~iRis~~~-----~~~~~i~~~~~~l~~~~  429 (431)
T PRK15481        361 PSP-GDGLNLWLPLDT---DSQATALTLAKSGWLVREGEAFGV--SAPSHGLRITLST-----LNDAEINRLAADLHQAL  429 (431)
T ss_pred             ccC-CCeEEEEEECCC---CHHHHHHHHHHCCcEEecCCcccc--CCCCCeEEEEcCC-----CChHHHHHHHHHHHHHh
Confidence            433 235677888753   356677778889999954321111  1123579998754     34789999999998876


Q ss_pred             H
Q 010008          469 E  469 (520)
Q Consensus       469 ~  469 (520)
                      .
T Consensus       430 ~  430 (431)
T PRK15481        430 N  430 (431)
T ss_pred             c
Confidence            4

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.91  E-value=2.8e-22  Score=214.48  Aligned_cols=344  Identities=17%  Similarity=0.136  Sum_probs=215.6

Q ss_pred             ccceEecCCCCChHHHHHHHhhhhhc----cCC-C-CCCCCCCCCcchhHHHHHHHHHHHHHHHcC----CCCCCCceee
Q 010008           94 KSLELIASENFTSRAVMEAVGSCLTN----KYS-E-GLPGKRYYGGNEYIDELETLCQKRALAAFN----LDENKWGVNV  163 (520)
Q Consensus        94 ~~i~Liasen~~~~~V~ea~~s~l~~----~y~-~-G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg----~~~~~~~~~V  163 (520)
                      ..|+|..+||..+..+++.......+    .+. . -.....+|+.......+.+...+++.+.+|    ++++    +|
T Consensus        39 g~i~L~~~En~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~----~I  114 (468)
T PLN02450         39 GIIQMGLAENQLSFDLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPN----KL  114 (468)
T ss_pred             eeEEeehhHhHhhHHHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChH----He
Confidence            45999999998665555544333211    000 0 000111122222234566566677777766    4554    57


Q ss_pred             ecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccc-cccceEEEEEcccCC-CCCCCCHHHHHHHhhh
Q 010008          164 QPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS-GTSIYFESMPYRLDE-STGLVDYDMLEKTAIL  240 (520)
Q Consensus       164 ~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~-~~g~~~~~v~~~~d~-~~~~iD~d~le~~i~~  240 (520)
                      .+++|+ +++..++.++++|||.|++++|.|.++..        .+. ..|.  ++++++++. +++.+|++++++++++
T Consensus       115 iit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~--------~~~~~~g~--~~v~v~~~~~~~~~~~~~~le~~~~~  184 (468)
T PLN02450        115 VLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDR--------DLKWRTGV--EIVPIHCSSSNGFQITESALEEAYQQ  184 (468)
T ss_pred             EEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHH--------HHhhcCCc--EEEEEecCCccCCcCCHHHHHHHHHH
Confidence            779998 89999999999999999999998765421        122 2454  677777653 3567899999988764


Q ss_pred             -----cCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccc-cCCCCC------------cc-
Q 010008          241 -----FRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VADPFK------------YC-  296 (520)
Q Consensus       241 -----~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~~p~~------------~a-  296 (520)
                           .++|+|++++|+||+  ..+   +++|.++|+++|++||+|++ |+++.+.+. ..+.+.            .. 
T Consensus       185 ~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~-Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~  263 (468)
T PLN02450        185 AQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEI-YSGTVFDSPGFVSVMEVLKDRKLENTDVSNR  263 (468)
T ss_pred             HHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEcc-ccccccCCCCcccHHHHhhhcccccCCCCCc
Confidence                 378999999999997  444   66778889999999999998 455444331 111110            11 


Q ss_pred             cEEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc--CchhHHHHHHHHH
Q 010008          297 DVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ--SPEFKVYQNKVVS  372 (520)
Q Consensus       297 Div~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~--~~~~~~~~~~i~~  372 (520)
                      -+++.|++|.+  +|.|.||++++++     .+.+.+.+.. .. ...+.. ...+++.+|+.-.  ...+++..+++.+
T Consensus       264 vi~l~S~SK~~~l~GlRiG~li~~~~-----~l~~~~~~~~-~~-~~~s~~-~Q~a~~~~L~~~~~~~~~l~~~~~~l~~  335 (468)
T PLN02450        264 VHIVYSLSKDLGLPGFRVGAIYSNDE-----MVVSAATKMS-SF-GLVSSQ-TQYLLSALLSDKKFTKNYLEENQKRLKQ  335 (468)
T ss_pred             EEEEEeccccCCCCCccEEEEEECCH-----HHHHHHHHHh-hc-CCCCHH-HHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence            16789999976  8999999999863     3444443321 11 122222 2233333343210  0123556778888


Q ss_pred             HHHHHHHHHHHCCCEEecCCCCCeeEEEEecCC----CCCH-H-HHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccC
Q 010008          373 NCRALASRLVELGYKLVSGGSDNHLVLVDLRPM----GIDG-A-RVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSP  445 (520)
Q Consensus       373 na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~----g~~~-~-~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~  445 (520)
                      +++.+.+.|.+.|+.+..+ ..+.++|+++...    .... . .+.++|+++||.+    .||.. +...++++||++.
T Consensus       336 rr~~l~~~L~~~gi~~~~~-~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v----~PG~~f~~~~~g~~Rl~f~  410 (468)
T PLN02450        336 RQKKLVSGLEAAGIKCLKS-NAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNI----SPGSSCHCTEPGWFRVCFA  410 (468)
T ss_pred             HHHHHHHHHHHcCCcccCC-CceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEE----eCccccCCCCCCEEEEEec
Confidence            8889999999888876543 2355778887521    1111 1 2444567899999    45543 2234679999875


Q ss_pred             CccccCCCHHHHHHHHHHHHHHHHH
Q 010008          446 AMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       446 ~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      .     .+++++++..+.|.+++..
T Consensus       411 ~-----~~~~~l~~~l~ri~~~l~~  430 (468)
T PLN02450        411 N-----MSEETLDLAMKRLKSFVES  430 (468)
T ss_pred             C-----CCHHHHHHHHHHHHHHHHh
Confidence            3     2468899998888887753

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.91  E-value=7.8e-22  Score=207.53  Aligned_cols=340  Identities=16%  Similarity=0.101  Sum_probs=211.7

Q ss_pred             hccceEecCCC------CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC--CCCCCCceeee
Q 010008           93 FKSLELIASEN------FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQ  164 (520)
Q Consensus        93 ~~~i~Liasen------~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg--~~~~~~~~~V~  164 (520)
                      ++.++|..++.      .+++.+++++...+......+|..   ..|   ..++.+...+++.+ .+  ++++    +|.
T Consensus        31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~g---~~~lr~aia~~~~~-~~~~~~~~----~i~   99 (401)
T TIGR01264        31 KPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYNGYAP---TVG---ALSAREAIASYYHN-PDGPIEAD----DVV   99 (401)
T ss_pred             CCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccCCCCCCC---CCC---CHHHHHHHHHHHhh-cCCCCCHH----HEE
Confidence            35588876553      367889999987766432223421   112   23444333334333 22  4444    566


Q ss_pred             cCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcC
Q 010008          165 PLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFR  242 (520)
Q Consensus       165 ~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~  242 (520)
                      +++|+ +|+..++.++++|||+|++++|.|..+.        ......|.  +++.++++.+ ++.+|++.+++.++. +
T Consensus       100 ~t~G~~~al~~~~~~l~~~gd~v~i~~P~y~~~~--------~~~~~~g~--~v~~~~~~~~~~~~~d~~~l~~~~~~-~  168 (401)
T TIGR01264       100 LCSGCSHAIEMCIAALANAGQNILVPRPGFPLYE--------TLAESMGI--EVKLYNLLPDKSWEIDLKQLESLIDE-K  168 (401)
T ss_pred             ECcChHHHHHHHHHHhCCCCCEEEEeCCCChhHH--------HHHHHcCC--EEEEeecCCccCCCCCHHHHHHHhcc-C
Confidence            68887 9999999999999999999998765432        12334454  5556666533 478999999998876 7


Q ss_pred             CcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC----cc-cEEEeccCcc--cCCC
Q 010008          243 PKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YC-DVVTTTTHKS--LRGP  310 (520)
Q Consensus       243 pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~----~a-Div~~S~hK~--l~Gp  310 (520)
                      +++|++++|+||+  ..   ++++|.++|+++|+++++|++ |.++.+.+....++.    .. -|++.|++|+  ++|.
T Consensus       169 ~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~-y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~Gl  247 (401)
T TIGR01264       169 TAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEI-YGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGW  247 (401)
T ss_pred             ceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhh-hhhhccCCcccccHHHcCCCCcEEEEccCcccCCCccc
Confidence            8999999999987  43   478889999999999999999 456554432111221    11 2678999997  4899


Q ss_pred             CceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEe
Q 010008          311 RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLV  389 (520)
Q Consensus       311 rgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~  389 (520)
                      |.||+++++......++.+.+.....+. .+. +.....++..+|.......+++..+++.++++.+.+.|.+. |+.+.
T Consensus       248 RiG~iv~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~  325 (401)
T TIGR01264       248 RLGWIIIHDRRGILRDIRDGLVKLSQRI-LGP-CTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLRPV  325 (401)
T ss_pred             eEEEEEecCcchhHHHHHHHHHHHhhcc-CCC-CcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence            9999998752100012333333221111 121 22233333334543112334677788888899999999885 66644


Q ss_pred             cCCCCCeeEEEEecC----CCCCHHHHHH-HHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHH
Q 010008          390 SGGSDNHLVLVDLRP----MGIDGARVEK-ILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  464 (520)
Q Consensus       390 ~~gt~~~~~~vd~~~----~g~~~~~~~~-~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i  464 (520)
                      .+ ....++|+++..    ...+..++.+ +++++||.+    .||+.. ..++++||++.      ..++++++..+.|
T Consensus       326 ~p-~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v----~pg~~f-~~~~~iRis~~------~~~~~l~~~l~rl  393 (401)
T TIGR01264       326 MP-SGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFC----LPGSCF-EYPGFFRVVLT------VPVVMMEEACSRI  393 (401)
T ss_pred             CC-CeeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEE----eCchhc-CCCCeEEEEEc------CCHHHHHHHHHHH
Confidence            33 235677888642    1124455544 457899999    455431 13679999864      2367777777777


Q ss_pred             HHHHH
Q 010008          465 HEGVE  469 (520)
Q Consensus       465 ~~~l~  469 (520)
                      .+.++
T Consensus       394 ~~~~~  398 (401)
T TIGR01264       394 QEFCE  398 (401)
T ss_pred             HHHHh
Confidence            76654

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.91  E-value=2.6e-22  Score=207.38  Aligned_cols=317  Identities=20%  Similarity=0.188  Sum_probs=215.5

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      +.|+|..++|+  +++.+++++.+.+.+.. .+||..    |   ..++    ++.++++++++++    +|.+++|+ +
T Consensus        25 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~-~~y~~~----~---~~~l----r~aia~~~~~~~~----~I~it~G~~~   88 (353)
T PRK05387         25 KLIKLNTNENPYPPSPKVLEAIRAALGDDL-RLYPDP----N---ADAL----RQAIAAYYGLDPE----QVFVGNGSDE   88 (353)
T ss_pred             ceeeccCCCCCCCCCHHHHHHHHHHhhhhh-hcCCCC----c---HHHH----HHHHHHHhCCCHH----HEEEcCCHHH
Confidence            56889888875  47889999987665322 234421    1   1233    3677788898876    56779998 8


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  250 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~  250 (520)
                      |+..++.++++|||+|++++|.|..+.        ......|.  +++.++++ +++.+|++++++     +.++|++++
T Consensus        89 al~~~~~~l~~~gd~vlv~~P~y~~~~--------~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~-----~~~~v~~~~  152 (353)
T PRK05387         89 VLAHAFLAFFNHDRPLLFPDITYSFYP--------VYAGLYGI--PYEEIPLD-DDFSIDVEDYLR-----PNGGIIFPN  152 (353)
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCHHHHH--------HHHHHcCC--EEEEeecC-CCCCCCHHHHHh-----cCCEEEEeC
Confidence            999999999999999999998764331        11234455  56666665 457899999863     457888889


Q ss_pred             CCCCC--CCCHHHHHHHHHHh-CCEEEEechhhcccccccccCCCC-C--cccEEEeccCccc--CCCCceEEEeeCCCc
Q 010008          251 SAYPR--DFDYPRMRQIADAV-GALLMMDMAHISGLVAASVVADPF-K--YCDVVTTTTHKSL--RGPRGGMIFFKKDPV  322 (520)
Q Consensus       251 s~~p~--~~d~~~i~~ia~~~-g~~li~D~Ah~~gli~~~~~~~p~-~--~aDiv~~S~hK~l--~GprgG~I~~~~~~~  322 (520)
                      |+||+  ..+.+++.++++.+ ++++++|++|. .+.  +....++ .  ...+++.|++|++  +|+|.||+++++   
T Consensus       153 P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~-~~~--~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~---  226 (353)
T PRK05387        153 PNAPTGIALPLAEIERILAANPDSVVVIDEAYV-DFG--GESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGHP---  226 (353)
T ss_pred             CCCCCCCCCCHHHHHHHHHhCCCcEEEEeCccc-ccC--CcchHHHHhhCCCEEEEEehhHhhcchhhhceeeecCH---
Confidence            99987  78999999999876 99999999863 221  1111111 1  2348889999975  789999999876   


Q ss_pred             chhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEe
Q 010008          323 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDL  402 (520)
Q Consensus       323 ~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~  402 (520)
                         ++.+++..........+.+.....++..++..  ...+++..+++.++++.+.+.|++.|+.+..++  .+++|+.+
T Consensus       227 ---~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--~~~~~~~~  299 (353)
T PRK05387        227 ---ELIEALNRVKNSFNSYPLDRLAQAGAIAAIED--EAYFEETRAKVIATRERLVEELEALGFEVLPSK--ANFVFARH  299 (353)
T ss_pred             ---HHHHHHHHhhccCCCCCcCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCeECCCc--CcEEEEEC
Confidence               67666654322111122233333333334431  123467778888899999999998888765432  45566665


Q ss_pred             cCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          403 RPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       403 ~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      .  +.+..++.+.|.+.||.+...   +.  +..++++|+++.       ++++++++.+.|++++.
T Consensus       300 ~--~~~~~~~~~~l~~~gi~v~~~---~~--~~~~~~iRis~~-------~~~~~~~~~~~L~~~~~  352 (353)
T PRK05387        300 P--SHDAAELAAKLRERGIIVRHF---NK--PRIDQFLRITIG-------TDEEMEALVDALKEILA  352 (353)
T ss_pred             C--CCCHHHHHHHHHHCCEEEEEC---CC--CCCCCeEEEEeC-------CHHHHHHHHHHHHHHhh
Confidence            4  456777888888999999531   11  123578999864       36899999999988754

>PRK08175 aminotransferase; Validated

Probab=99.91  E-value=1.9e-21  Score=204.23  Aligned_cols=335  Identities=16%  Similarity=0.128  Sum_probs=212.0

Q ss_pred             ccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCceeeecCChH
Q 010008           94 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGS  169 (520)
Q Consensus        94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~sGs  169 (520)
                      +.++|..+..  .+++.+.+++...+.+....+|+.   ..|   ..++++...+++.+.+|..  ++   .+|.+++|+
T Consensus        30 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G---~~~lr~aia~~~~~~~g~~~~~~---~~i~~t~G~  100 (395)
T PRK08175         30 DIIDFSMGNPDGPTPPHIVEKLCEVAQRPDTHGYST---SRG---IPRLRRAISRWYQDRYDVDIDPE---SEAIVTIGS  100 (395)
T ss_pred             CeEEcCCCCCCCCCCHHHHHHHHHHHhCCCcCCCCC---CCC---CHHHHHHHHHHHHHHhCCCCCCC---CcEEEccCc
Confidence            4566654432  245667777766554332223432   122   3355555567777776764  32   146678998


Q ss_pred             -HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc--CCcEE
Q 010008          170 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLI  246 (520)
Q Consensus       170 -~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~--~pklI  246 (520)
                       +++..++.++++|||+|++++|.|..+..        .....|.  +++.++++++  ..+.++++++++..  ++|+|
T Consensus       101 ~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~~~~--~~~~~~l~~~l~~~~~~~~~v  168 (395)
T PRK08175        101 KEGLAHLMLATLDHGDTVLVPNPSYPIHIY--------GAVIAGA--QVRSVPLVEG--VDFFNELERAIRESYPKPKMM  168 (395)
T ss_pred             HHHHHHHHHHhCCCCCEEEEcCCCCcchHH--------HHHHcCC--eEEEEecccC--CCcHHHHHHHHhhccCCceEE
Confidence             88888888999999999999998765421        1233454  6667767643  23578888877642  68999


Q ss_pred             EEcCCCCCC--CCCH---HHHHHHHHHhCCEEEEechhhcccccccccCCCC---C-ccc--EEEeccCccc--CCCCce
Q 010008          247 IAGASAYPR--DFDY---PRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YCD--VVTTTTHKSL--RGPRGG  313 (520)
Q Consensus       247 i~~~s~~p~--~~d~---~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~---~-~aD--iv~~S~hK~l--~GprgG  313 (520)
                      +++.|+||+  ..+.   ++|.++|+++|+++|+|+++ ..+.+.+....++   . ..|  +++.|++|++  +|.|.|
T Consensus       169 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y-~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG  247 (395)
T PRK08175        169 ILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAY-ADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIG  247 (395)
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecch-HhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhhe
Confidence            998888887  5565   78889999999999999985 3444433221111   1 123  6679999987  788999


Q ss_pred             EEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCC
Q 010008          314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS  393 (520)
Q Consensus       314 ~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt  393 (520)
                      |++.++      ++.+++.+.......+.....+.++ ..++... ....+...+.+.++++++.+.|++.|+.+..+ .
T Consensus       248 ~~~~~~------~l~~~~~~~~~~~~~~~~~~~q~~~-~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p-~  318 (395)
T PRK08175        248 FMVGNP------ELVSALARIKSYHDYGTFTPLQVAA-IAALEGD-QQCVRDIAEQYKRRRDVLVKGLHEAGWMVEMP-K  318 (395)
T ss_pred             eeeCCH------HHHHHHHHHHhhcccCCCcHHHHHH-HHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCC-C
Confidence            999887      6766654432111122222323322 2334321 12345667778888899999998888876543 2


Q ss_pred             CCeeEEEEecCC--CCCHHHHHH-HHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          394 DNHLVLVDLRPM--GIDGARVEK-ILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       394 ~~~~~~vd~~~~--g~~~~~~~~-~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ...++|+++...  .++..++.+ +++++||.|..    |.. +...++++||++.      ..++.+++..+.|.+++.
T Consensus       319 ~g~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p----~~~f~~~~~~~lRis~~------~~~~~~~~al~~l~~~l~  388 (395)
T PRK08175        319 ASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSP----GIGFGDYGDTHVRFALI------ENRDRIRQAIRGIKAMFR  388 (395)
T ss_pred             EEEEEEEECCcccCCCCHHHHHHHHHHhCCEEEeC----chhhCcCCCCeEEEEeC------CCHHHHHHHHHHHHHHHH
Confidence            356778887532  123555554 56789999954    432 2223568999863      236778877777777664

>PRK09105 putative aminotransferase; Provisional

Probab=99.91  E-value=4e-22  Score=207.37  Aligned_cols=311  Identities=16%  Similarity=0.119  Sum_probs=212.1

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      +.+.|..++|+  +|+.+++++...+...  ..||.      .. .+++.    +.+++.+|++++    +|.+++|+ +
T Consensus        44 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~--~~Y~~------~~-~~~Lr----~aia~~~~v~~e----~I~it~Gs~~  106 (370)
T PRK09105         44 GAVFLNANECPLGPSPAARDAAARSAALS--GRYDL------EL-EDDLR----TLFAAQEGLPAD----HVMAYAGSSE  106 (370)
T ss_pred             CcEEecCCCCCCCCCHHHHHHHHHHHHHh--cCCCC------ch-HHHHH----HHHHHHhCcChh----hEEEcCChHH
Confidence            55788888874  6899999998765421  12331      11 33343    566778899886    56668888 8


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  250 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~  250 (520)
                      ++..++.++++|||+|++++|.|.++..        .....|.  +++.++++ +++.+|++++++. .+ +++++++++
T Consensus       107 ai~~~~~~l~~~gd~Vli~~P~y~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~-~~-~~~~v~l~n  173 (370)
T PRK09105        107 PLNYAVLAFTSPTAGLVTADPTYEAGWR--------AADAQGA--PVAKVPLR-ADGAHDVKAMLAA-DP-NAGLIYICN  173 (370)
T ss_pred             HHHHHHHHHcCCCCEEEEeCCChHHHHH--------HHHHcCC--eEEEecCC-CCCCCCHHHHHhc-CC-CCCEEEEeC
Confidence            9999999999999999999998765421        2334555  66666666 3578999999876 34 789999999


Q ss_pred             CCCCC--CCCHHHHHHHHHH--hCCEEEEechhhcccccccccCCCCC----ccc-EEEeccCccc--CCCCceEEEeeC
Q 010008          251 SAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK----YCD-VVTTTTHKSL--RGPRGGMIFFKK  319 (520)
Q Consensus       251 s~~p~--~~d~~~i~~ia~~--~g~~li~D~Ah~~gli~~~~~~~p~~----~aD-iv~~S~hK~l--~GprgG~I~~~~  319 (520)
                      |+||+  ..+.+++.++++.  +|+++|+|+++. .+..   .++...    +.+ +++.|++|++  +|+|.||+++++
T Consensus       174 P~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~-~f~~---~~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~  249 (370)
T PRK09105        174 PNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYI-HFSD---APSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARP  249 (370)
T ss_pred             CCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchH-Hhcc---CcchHHHHhhCCCEEEEecccHhhcCCccceeeeecCH
Confidence            99997  7788888888764  489999999963 3221   111111    234 6678999986  789999999987


Q ss_pred             CCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEE
Q 010008          320 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVL  399 (520)
Q Consensus       320 ~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~  399 (520)
                            ++.+++... .  .... +.....+...+|..  ....++..+++.++++.+.+.|.+.|+.+..+  ...+++
T Consensus       250 ------~~i~~l~~~-~--~~~~-~~~~~~aa~~~L~~--~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~--~~~f~~  315 (370)
T PRK09105        250 ------DLLAKLARF-G--HNPL-PVPAAAAGLASLRD--PKLVPQRRAENAAVREDTIAWLKKKGYKCTPS--QANCFM  315 (370)
T ss_pred             ------HHHHHHHhc-C--CCCc-CHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCC--CCcEEE
Confidence                  676666553 1  1122 22222222234432  12336667788889999999999888876653  233445


Q ss_pred             EEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          400 VDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       400 vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      +++.   .+..++.+.|.+.||.+... .+     ..++++||++.       ++++++++.+.+++++
T Consensus       316 ~~~~---~~~~~l~~~L~~~gI~v~~~-~~-----~~~~~~Ris~~-------~~~~~~~l~~al~~~~  368 (370)
T PRK09105        316 VDVK---RPAKAVADAMAKQGVFIGRS-WP-----IWPNWVRVTVG-------SEEEMAAFRSAFAKVM  368 (370)
T ss_pred             EeCC---CCHHHHHHHHHHCCcEEecC-CC-----CCCCeEEEEcC-------CHHHHHHHHHHHHHHh
Confidence            6653   35677777777889999422 11     12579999864       3688999999888765

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.91  E-value=7.1e-22  Score=202.91  Aligned_cols=318  Identities=21%  Similarity=0.229  Sum_probs=225.7

Q ss_pred             ccceEecCCCCC--hHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC-CCCCCCceeeecCChH-
Q 010008           94 KSLELIASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN-LDENKWGVNVQPLSGS-  169 (520)
Q Consensus        94 ~~i~Liasen~~--~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg-~~~~~~~~~V~~~sGs-  169 (520)
                      ..+.|..+||+.  |+.+.+++...+. . .+-||..      . ..+++    +.+++.+| .+++    +|.++.|+ 
T Consensus        23 ~~i~LssNenP~gp~~~~~~~~~~~~~-~-~~rYPd~------~-~~~l~----~a~a~~~~~~~~~----~V~~gnGsd   85 (356)
T COG0079          23 GIIKLSSNENPYGPPPKVIEAIRAALD-K-LNRYPDP------D-YRELR----AALAEYYGVVDPE----NVLVGNGSD   85 (356)
T ss_pred             cceeecCCCCCCCCCHHHHHHHHHHHH-h-hccCCCC------c-HHHHH----HHHHHHhCCCCcc----eEEEcCChH
Confidence            358899999974  5888888877654 1 1224431      1 22333    56778888 6664    67789999 


Q ss_pred             HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 010008          170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  249 (520)
Q Consensus       170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~  249 (520)
                      +.+..++.+++.|||+|+++.|+|+.+-        ......|.  +++.+++++  +.+|++.+.+.+.+ ++++|+++
T Consensus        86 e~i~~l~~~~~~~gd~vl~~~Ptf~~Y~--------~~a~~~g~--~~~~v~~~~--~~~d~~~~~~~~~~-~~~lv~i~  152 (356)
T COG0079          86 ELIELLVRAFVEPGDTVLIPEPTFSMYE--------IAAQLAGA--EVVKVPLKE--FRLDLDAILAAIRD-KTKLVFLC  152 (356)
T ss_pred             HHHHHHHHHhhcCCCEEEEcCCChHHHH--------HHHHhcCC--eEEEecccc--cccCHHHHHHhhhc-CCCEEEEe
Confidence            8888999999999999999999876442        12334555  666766663  89999999999988 89999999


Q ss_pred             CCCCCC--CCCHHHHHHHHHHh--CCEEEEechhhcccccccccCCCCCccc--EEEeccCcc--cCCCCceEEEeeCCC
Q 010008          250 ASAYPR--DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFKYCD--VVTTTTHKS--LRGPRGGMIFFKKDP  321 (520)
Q Consensus       250 ~s~~p~--~~d~~~i~~ia~~~--g~~li~D~Ah~~gli~~~~~~~p~~~aD--iv~~S~hK~--l~GprgG~I~~~~~~  321 (520)
                      +||||+  .++.++|.+++...  +++|++|+| |..+....... .+.+.+  +++-|++|.  |+|.|.|+++.++  
T Consensus       153 nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEA-Y~eF~~~~~~~-l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~--  228 (356)
T COG0079         153 NPNNPTGTLLPREELRALLEALPEGGLVVIDEA-YIEFSPESSLE-LLKYPPNLIVLRTFSKAFGLAGLRVGYAIANP--  228 (356)
T ss_pred             CCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCc-hhhcCCchhhh-hccCCCCEEEEEecHHhhhcchhceeeccCCH--
Confidence            999998  77888888887765  889999999 44444311110 111233  778999996  4899999999988  


Q ss_pred             cchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCE-EecCCCCCeeEEE
Q 010008          322 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYK-LVSGGSDNHLVLV  400 (520)
Q Consensus       322 ~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~-v~~~gt~~~~~~v  400 (520)
                          ++.+.+++..-|....+   ...++..++++..  +..++..+++...++++.+.|.+.|+. +...  ..+++++
T Consensus       229 ----~~i~~l~~vr~p~~v~~---~a~~aa~aal~~~--~~~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS--~aNFvlv  297 (356)
T COG0079         229 ----ELIAALNKVRPPFNVSS---PALAAAIAALRDA--DYLEESVERIREERERLYAALKALGLFGVFPS--QANFVLV  297 (356)
T ss_pred             ----HHHHHHHHhcCCCCCCH---HHHHHHHHHcccH--HHHHHHHHHHHHHHHHHHHHHHhCCCCeecCC--CCcEEEE
Confidence                78888888766653322   2222222233321  234778888999999999999998755 5443  3567788


Q ss_pred             EecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          401 DLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       401 d~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ++.. +- ...+.+.|.+.||.++...-+    +..++++||++.       +++|.+++.+++.++++
T Consensus       298 ~~~~-~~-~~~l~~~L~~~giivR~~~~~----~~~~~~lRitvg-------t~een~~ll~AL~~~~~  353 (356)
T COG0079         298 RVPD-AE-AAALAEALLKKGILVRDCSSV----GLLPGYLRITVG-------TPEENDRLLAALREVLK  353 (356)
T ss_pred             ECCC-cc-HHHHHHHHHHCCEEEEeCCCC----CCCCCeEEEEeC-------CHHHHHHHHHHHHHHHh
Confidence            7754 22 457889999999999864211    234679999864       36888999999988775

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.91  E-value=5.2e-22  Score=206.43  Aligned_cols=320  Identities=18%  Similarity=0.178  Sum_probs=218.9

Q ss_pred             cceEecCCCC--ChHHHHHHHhhhhhcc--CCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceeeecCCh
Q 010008           95 SLELIASENF--TSRAVMEAVGSCLTNK--YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSG  168 (520)
Q Consensus        95 ~i~Liasen~--~~~~V~ea~~s~l~~~--y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V~~~sG  168 (520)
                      .|+|..++|+  +|+.+++++...+...  ...+||..    |   ...+++...+++.+.+|.  +++    +|.+++|
T Consensus        28 ~i~l~~~~~~~~~~~~~~~al~~~l~~~~~~~~~Y~~~----g---~~~lr~aia~~~~~~~~~~~~~~----~I~it~G   96 (368)
T PRK03317         28 PVRLNTNENPYPPSPALVADIAEAVAEAAAGLNRYPDR----D---AVALRADLAAYLTAQTGVGLTVE----NVWAANG   96 (368)
T ss_pred             eeEecCCCCCCCCCHHHHHHHHHHHhhhhhhhccCCCC----c---hHHHHHHHHHHhhhhccCCCChh----hEEECCC
Confidence            4788888875  6888999998776431  12244421    1   245555555677776665  454    6778999


Q ss_pred             H-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 010008          169 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII  247 (520)
Q Consensus       169 s-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi  247 (520)
                      + +++..++.++++|||.|++++|.|.++..        .....|.  +++.++.+ +++.+|+++++++++..++|+|+
T Consensus        97 ~~~~l~~~~~~~~~~gd~v~v~~P~y~~~~~--------~~~~~g~--~~~~~~~~-~~~~~d~~~l~~~~~~~~~~~i~  165 (368)
T PRK03317         97 SNEILQQLLQAFGGPGRTALGFVPSYSMHPI--------IARGTHT--EWVEGPRA-ADFTLDVDAAVAAIAEHRPDVVF  165 (368)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCChHHHHH--------HHHhcCC--eeEEcccC-CCCCCCHHHHHHHHhccCCCEEE
Confidence            8 89999999999999999999998765421        2223343  56666554 35789999999998765899999


Q ss_pred             EcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC----ccc-EEEeccCccc--CCCCceEEEee
Q 010008          248 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCD-VVTTTTHKSL--RGPRGGMIFFK  318 (520)
Q Consensus       248 ~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~----~aD-iv~~S~hK~l--~GprgG~I~~~  318 (520)
                      ++.|+||+  ..+.+++.++++.++++||+|++|. ++...+. +..+.    +.+ +++.|++|.+  +|.|.|+++++
T Consensus       166 l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~-~~~~~~~-~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~  243 (368)
T PRK03317        166 LTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYA-EFRRSGT-PSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAA  243 (368)
T ss_pred             EeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCch-hhcccCC-cCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCC
Confidence            98999987  7899999999999999999999964 4432221 11111    223 6778999987  58899999998


Q ss_pred             CCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeE
Q 010008          319 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLV  398 (520)
Q Consensus       319 ~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~  398 (520)
                      +      ++.+.+.....+.  +.+.. ..++...+|+..  ..+.+..+++.++++.+.+.|.+.|+.+..+. .+++.
T Consensus       244 ~------~~~~~l~~~~~~~--~~s~~-~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~  311 (368)
T PRK03317        244 P------AVVDALRLVRLPY--HLSAV-TQAAARAALRHA--DELLASVAALRAERDRVVAWLRELGLRVAPSD-ANFVL  311 (368)
T ss_pred             H------HHHHHHHhcCCCC--CCCHH-HHHHHHHHhhCH--HHHHHHHHHHHHHHHHHHHHHHHCCCEeCCCC-CcEEE
Confidence            7      6777665433222  22222 232333345432  23455567778888889999988888765432 23333


Q ss_pred             EEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          399 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       399 ~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      |.++.    +..++.+.|.++||.+..    +.    .++++||++.       +.++++++.+.+.+++.
T Consensus       312 ~~~~~----~~~~~~~~l~~~Gv~v~~----~~----~~~~iRi~~~-------~~~~~~~~~~~l~~~~~  363 (368)
T PRK03317        312 FGRFA----DRHAVWQGLLDRGVLIRD----VG----IPGWLRVTIG-------TPEENDAFLAALAEVLA  363 (368)
T ss_pred             EeccC----CHHHHHHHHHHCCEEEEe----CC----CCCeEEEecC-------CHHHHHHHHHHHHHHHH
Confidence            33432    457788888899999953    11    2568999854       36889999999988765

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.91  E-value=4.2e-22  Score=206.97  Aligned_cols=319  Identities=18%  Similarity=0.163  Sum_probs=216.8

Q ss_pred             hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-
Q 010008           93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-  169 (520)
Q Consensus        93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-  169 (520)
                      .+.|+|..++|+  +++.+++++...+.. + ..||..      . ..+++    +.+++++|++++    +|.+++|+ 
T Consensus        32 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~-~~y~~~------~-~~~lr----~~ia~~~~~~~~----~i~~t~G~~   94 (367)
T PRK02731         32 ADIIKLASNENPLGPSPKAIEAIRAAADE-L-HRYPDG------S-GFELK----AALAEKFGVDPE----RIILGNGSD   94 (367)
T ss_pred             CceEEecCCCCCCCCCHHHHHHHHHHHHh-h-cCCCCC------c-HHHHH----HHHHHHhCcCHH----HEEEcCCHH
Confidence            356888877765  578899988876542 2 234431      1 13344    567778899875    56678998 


Q ss_pred             HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 010008          170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  249 (520)
Q Consensus       170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~  249 (520)
                      +++..++.+++++||+|++.+|.|..+..        .....|.  +++.++.+  ++.+|++++++.+++ ++|+|+++
T Consensus        95 ~~l~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~--~~~~~~~~l~~~~~~-~~~~v~l~  161 (367)
T PRK02731         95 EILELLARAYLGPGDEVIYSEHGFAVYPI--------AAQAVGA--KPVEVPAK--DYGHDLDAMLAAVTP-RTRLVFIA  161 (367)
T ss_pred             HHHHHHHHHhcCCCCEEEEecCCHHHHHH--------HHHHcCC--eEEEeccc--CCCCCHHHHHHHhCC-CCcEEEEe
Confidence            77778888899999999999987643210        1223454  55565553  578999999999976 89999999


Q ss_pred             CCCCCC--CCCHHHHHHHHHHh--CCEEEEechhhcccccccccCCCCC----c-ccEEEeccCccc--CCCCceEEEee
Q 010008          250 ASAYPR--DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK----Y-CDVVTTTTHKSL--RGPRGGMIFFK  318 (520)
Q Consensus       250 ~s~~p~--~~d~~~i~~ia~~~--g~~li~D~Ah~~gli~~~~~~~p~~----~-aDiv~~S~hK~l--~GprgG~I~~~  318 (520)
                      .++||+  ..+.+++.++++.+  |+++++|++|. .+...+....++.    . ..+++.|++|++  +|+|.||++++
T Consensus       162 ~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~  240 (367)
T PRK02731        162 NPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYA-EYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAP  240 (367)
T ss_pred             CCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHH-HhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCC
Confidence            899987  78999999999875  99999999854 3333221111111    1 237788999985  68899999998


Q ss_pred             CCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCee
Q 010008          319 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL  397 (520)
Q Consensus       319 ~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~-~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~  397 (520)
                      +      ++.+.+.....+.  +.+...+.++ ..+++   ... .++..+...++++.+.+.|.+.|+.+..+  ...+
T Consensus       241 ~------~~~~~l~~~~~~~--~~~~~~~~~a-~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~g~~  306 (367)
T PRK02731        241 P------EIIDALNRVRQPF--NVNSLALAAA-VAALD---DDAFVEKSRALNAEGMAWLTEFLAELGLEYIPS--VGNF  306 (367)
T ss_pred             H------HHHHHHHHccCCC--CCCHHHHHHH-HHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHCCCccCCC--CceE
Confidence            7      6766665433221  2222222222 22232   223 35666777788888999998888876543  3567


Q ss_pred             EEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          398 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       398 ~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +|+++. .+.+..++.+.|.+.||.+...    ... ..+++|||++.       +.+|++++.+.|+++++
T Consensus       307 ~~i~~~-~~~~~~~~~~~L~~~gI~v~~~----~~~-~~~~~iRis~~-------~~~e~~~l~~aL~~~~~  365 (367)
T PRK02731        307 ILVDFD-DGKDAAEAYQALLKRGVIVRPV----AGY-GLPNALRITIG-------TEEENRRFLAALKEFLA  365 (367)
T ss_pred             EEEECC-CCCCHHHHHHHHHHCCEEEEeC----CCC-CCCCeEEEecC-------CHHHHHHHHHHHHHHHh
Confidence            787773 3457788888888999999543    221 12578999964       36899999999988764

>PRK09265 aminotransferase AlaT; Validated

Probab=99.91  E-value=1.8e-21  Score=204.97  Aligned_cols=337  Identities=14%  Similarity=0.064  Sum_probs=207.7

Q ss_pred             ccceEecCC-C----CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHc--CCCCCCCceeeecC
Q 010008           94 KSLELIASE-N----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF--NLDENKWGVNVQPL  166 (520)
Q Consensus        94 ~~i~Liase-n----~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lf--g~~~~~~~~~V~~~  166 (520)
                      +.++|..++ +    .+++.+.+++.+.+...  .+|+.   ..|.   ..+.+...+++....  +++++    +|.++
T Consensus        34 ~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~~--~~Y~~---~~G~---~~lr~~ia~~~~~~~~~~~~~~----~i~~t  101 (404)
T PRK09265         34 KILKLNIGNPAPFGFEAPDEILRDVIRNLPTA--QGYSD---SKGL---FSARKAIMQYYQQKGIPDVDVD----DIYIG  101 (404)
T ss_pred             CeEEecCCCCCcCCCCCCHHHHHHHHHHhhcC--CCCCC---CCCc---HHHHHHHHHHHhccCCCCCCcc----cEEEe
Confidence            568887643 2    26788988887765432  24443   1222   234333333333222  56665    56678


Q ss_pred             ChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCc
Q 010008          167 SGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPK  244 (520)
Q Consensus       167 sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pk  244 (520)
                      +|+ +++..++.++++|||+|++++|.|.....        .+...|.  +++.++++.+ ++.+|++++++.++. +++
T Consensus       102 ~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~v~~~~~~~~~~~~d~~~l~~~~~~-~~~  170 (404)
T PRK09265        102 NGVSELIVMAMQALLNNGDEVLVPAPDYPLWTA--------AVSLSGG--KPVHYLCDEEAGWFPDLDDIRSKITP-RTK  170 (404)
T ss_pred             CChHHHHHHHHHHhCCCCCEEEEeCCCCcChHH--------HHHHcCC--EEEEEecccccCCCCCHHHHHHhccc-cce
Confidence            888 78888999999999999999998764321        2223344  5555555533 467999999999876 899


Q ss_pred             EEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC----ccc-EEEeccCccc--CCCCc
Q 010008          245 LIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCD-VVTTTTHKSL--RGPRG  312 (520)
Q Consensus       245 lIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~----~aD-iv~~S~hK~l--~Gprg  312 (520)
                      +|++++|+||+  .++   +++|.++|+++|+++++|+++ .++.+.+....++.    ... +++.|++|++  +|.|.
T Consensus       171 ~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRi  249 (404)
T PRK09265        171 AIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIY-DKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRV  249 (404)
T ss_pred             EEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhh-hhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccce
Confidence            99988899987  567   888999999999999999984 45544332111211    112 5678999986  78999


Q ss_pred             eEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHH---HHHHHHHHHHHHHHHHHC-CCEE
Q 010008          313 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY---QNKVVSNCRALASRLVEL-GYKL  388 (520)
Q Consensus       313 G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~---~~~i~~na~~l~~~L~~~-G~~v  388 (520)
                      ||++...+.....++.+.+..... ...+.+...+. +...+|..  ...++++   .+++.++++.+.+.|++. |+.+
T Consensus       250 G~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~-~~~~~l~~--~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~  325 (404)
T PRK09265        250 GWMVLSGPKKHAKGYIEGLDMLAS-MRLCANVPAQH-AIQTALGG--YQSINELILPGGRLYEQRDRAWELLNAIPGVSC  325 (404)
T ss_pred             EEEEEeCchHHHHHHHHHHHHHhc-cccCCCcHHHH-HHHHHhcC--chhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            999974321000013333321111 11122222233 33334431  1122222   246677788888888774 7765


Q ss_pred             ecCCCCCeeEEEEecCCC---C-CHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHH
Q 010008          389 VSGGSDNHLVLVDLRPMG---I-DGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADF  463 (520)
Q Consensus       389 ~~~gt~~~~~~vd~~~~g---~-~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~  463 (520)
                      ..+ ..+.++|+++....   . +.+.+.+.|.+.||.+    .||.. +...++++|++..      .+++++++..+.
T Consensus       326 ~~p-~~g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v----~pg~~F~~~~~~~~Ri~~~------~~~e~l~~~l~r  394 (404)
T PRK09265        326 VKP-KGALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLL----VQGTGFNWPEPDHFRIVTL------PRVDDLEEAIGR  394 (404)
T ss_pred             cCC-CcceEEEEEecccccCCCCHHHHHHHHHHhCCEEE----ECchhhCCCCCCeEEEEeC------CCHHHHHHHHHH
Confidence            544 23566777775321   1 2355788899999999    45543 2223578999863      347889988888


Q ss_pred             HHHHHH
Q 010008          464 IHEGVE  469 (520)
Q Consensus       464 i~~~l~  469 (520)
                      |.++++
T Consensus       395 l~~~l~  400 (404)
T PRK09265        395 IGRFLS  400 (404)
T ss_pred             HHHHHH
Confidence            887775

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.91  E-value=1.3e-21  Score=204.57  Aligned_cols=333  Identities=19%  Similarity=0.181  Sum_probs=214.7

Q ss_pred             ccceEecCC--CC-ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHH
Q 010008           94 KSLELIASE--NF-TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP  170 (520)
Q Consensus        94 ~~i~Liase--n~-~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~  170 (520)
                      +.|+|..++  .+ .++.+++++...+. +|...+.+-++..|.   ..+.+..++++++++|.+.     .|.++||++
T Consensus        34 ~~id~~~~~~~g~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~g~---~~l~~~l~~~l~~~~g~~~-----~i~~~sG~~  104 (385)
T TIGR01825        34 EVINLSSNNYLGFADHPRLKEAAAQAIQ-QYGVGAGAVRTIAGT---LRLHEELEEKLAKFKKTEA-----ALVFQSGFN  104 (385)
T ss_pred             eEEEeeccCccCCCCCHHHHHHHHHHHH-HcCCCCCccCcccCC---cHHHHHHHHHHHHHhCCCc-----EEEECcHHH
Confidence            557887654  34 68889898877654 332222222223343   2333445578889999753     466799999


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc---CCcEEE
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLII  247 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~---~pklIi  247 (520)
                      ++..++.++++|||.|++.++.|+++..        .+...|.  ++..+      ..+|++++++.+++.   ++++|+
T Consensus       105 a~~~a~~~~~~~gd~vi~~~~~~~~~~~--------~~~~~g~--~~~~~------~~~d~~~l~~~l~~~~~~~~~~v~  168 (385)
T TIGR01825       105 TNQGVLSALLRKGDIVLSDELNHASIID--------GLRLTKA--TKKIY------KHADMDDLDRVLRENPSYGKKLIV  168 (385)
T ss_pred             HHHHHHHHhCCCCCEEEEEccccHHHHH--------HHHhcCC--ceEEe------CCCCHHHHHHHHHhhccCCCeEEE
Confidence            9999999999999999998887765421        1223333  33232      147888888877642   578888


Q ss_pred             EcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccc-cc---cCCCC-CcccEEEeccCcccCCCCceEEEeeCC
Q 010008          248 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAA-SV---VADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKD  320 (520)
Q Consensus       248 ~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~-~~---~~~p~-~~aDiv~~S~hK~l~GprgG~I~~~~~  320 (520)
                      ++...+++  ..|+++|.++|+++|+++|+|++|..|.... +.   ....+ ...|+++.|+||++ |++|||++.++ 
T Consensus       169 ~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~gG~~~~~~-  246 (385)
T TIGR01825       169 TDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAI-GVVGGYAAGHK-  246 (385)
T ss_pred             EecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHh-hcCCCEEecCH-
Confidence            87655554  7899999999999999999999986664321 10   00112 25689999999998 55789998877 


Q ss_pred             CcchhhHHHhhcccCCCCCCC-CChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEE
Q 010008          321 PVLGVELESAINNAVFPGLQG-GPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVL  399 (520)
Q Consensus       321 ~~~~~~l~~~i~~~~~p~~~g-~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~  399 (520)
                           ++.+.+.....+...+ .++...++++..+++....  ..+..+++.++++.+.+.|.+.|+++..+.  ..++.
T Consensus       247 -----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--~~~~~  317 (385)
T TIGR01825       247 -----ELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQR--SPELMERLWDNTRFFKAGLGKLGYDTGGSE--TPITP  317 (385)
T ss_pred             -----HHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCCCCCCC--CCEEE
Confidence                 5666654332222222 2334445555566765432  234667778889999999988888876542  23333


Q ss_pred             EEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          400 VDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       400 vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +.+.. ..+...+.+.|.+.||.+.....|..  +.....||++.+..    .+++|++++++.|+++++
T Consensus       318 ~~~~~-~~~~~~~~~~L~~~gi~v~~~~~~~~--~~~~~~iRi~~~~~----~~~e~i~~~~~~l~~~~~  380 (385)
T TIGR01825       318 VVIGD-EKAAQEFSRRLFDEGIFAQSIVFPTV--PRGTARIRNIPTAE----HTKDDLDQALDAYEKVGK  380 (385)
T ss_pred             EEECC-HHHHHHHHHHHHHCCcEEcccCCCCC--CCCCceEEEEEcCC----CCHHHHHHHHHHHHHHHH
Confidence            33321 12345666677667999853322211  12346799976543    458999999999998875

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.91  E-value=1.2e-21  Score=210.77  Aligned_cols=328  Identities=14%  Similarity=0.088  Sum_probs=208.4

Q ss_pred             ChHHHHHHHhhhhhccC--CCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhC-
Q 010008          105 TSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAIL-  180 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y--~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all-  180 (520)
                      .|..+++++...+.+.-  ..+|+      ......++.+...+++.+..|.+.+.  -+|.+|+|+ +|+..++.+++ 
T Consensus        89 ~P~~~~~~~~~~~~~~~~~~~~Y~------~~~G~~~LR~aia~~~~~~~g~~~~~--~~I~it~Ga~~al~~~~~~l~~  160 (481)
T PTZ00377         89 FPADVVARAKEYLNAIGGGTGAYT------DSAGYPFVRKAVAAFIERRDGVPKDP--SDIFLTDGASSGIKLLLQLLIG  160 (481)
T ss_pred             CCHHHHHHHHHHHHhCCCcccCcC------cccCCHHHHHHHHHHHHHhcCCCCCh--hhEEEcCCHHHHHHHHHHHhcc
Confidence            45678888765554321  11233      22223456666667777777765321  267789998 89999999998 


Q ss_pred             CCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhc-----CCcEEEEcCCCCC
Q 010008          181 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILF-----RPKLIIAGASAYP  254 (520)
Q Consensus       181 ~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~-----~pklIi~~~s~~p  254 (520)
                      +|||+|++++|.|.++.        ..+...|.  +++.++++++ ++.+|++++++.+++.     ++|+|++++|+||
T Consensus       161 ~~gD~Vlv~~P~y~~y~--------~~~~~~g~--~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NP  230 (481)
T PTZ00377        161 DPSDGVMIPIPQYPLYS--------AAITLLGG--KQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNP  230 (481)
T ss_pred             CCCCEEEECCCCchhHH--------HHHHHcCC--EEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCC
Confidence            79999999999876542        13344555  6677777654 4689999999998752     6898888889999


Q ss_pred             C--CCC---HHHHHHHHHHhCCEEEEechhhccccccc--ccCCC------CC--c----ccEEEeccCccc---CCCCc
Q 010008          255 R--DFD---YPRMRQIADAVGALLMMDMAHISGLVAAS--VVADP------FK--Y----CDVVTTTTHKSL---RGPRG  312 (520)
Q Consensus       255 ~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~--~~~~p------~~--~----aDiv~~S~hK~l---~Gprg  312 (520)
                      +  .++   +++|.++|+++|++||+|+++ ..+++.+  .+++.      +.  +    .-+++.|++|++   +|+|.
T Consensus       231 TG~~~s~e~~~~i~~~a~~~~~~iI~De~Y-~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRi  309 (481)
T PTZ00377        231 TGQVLTRDVMEEIIKFCYEKGIVLMADEVY-QENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRG  309 (481)
T ss_pred             CCcCCCHHHHHHHHHHHHHCCCEEEEehhh-HhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCce
Confidence            7  555   788899999999999999984 4555422  11111      11  1    115678999974   69999


Q ss_pred             eEEEe---eCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHh--cCch---h----HHHHHHHHHHHHHHHHH
Q 010008          313 GMIFF---KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA--QSPE---F----KVYQNKVVSNCRALASR  380 (520)
Q Consensus       313 G~I~~---~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~--~~~~---~----~~~~~~i~~na~~l~~~  380 (520)
                      ||+++   ++      ++.+++.+.... ..+.+...+.+ ...+++..  ....   +    +...+++.++++.+.+.
T Consensus       310 G~~~~~~~p~------~li~~l~~~~~~-~~~~~~~~Q~a-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~  381 (481)
T PTZ00377        310 GYFELTNIPP------EVREQIYKLASI-NLCSNVVGQLM-TGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDE  381 (481)
T ss_pred             EEEEEeCCCH------HHHHHHHHHhhe-ecCCChHHHHH-HHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99987   44      666666553322 22333333333 33344310  0111   2    12223356778888899


Q ss_pred             HHHC-CCEEecCCCCCeeEEEEecC-CC---------C--CHHHHHHHHhhcCeEEcCCCCCCCC-CC-CCCCEEEEccC
Q 010008          381 LVEL-GYKLVSGGSDNHLVLVDLRP-MG---------I--DGARVEKILDMASITLNKNSVPGDK-SA-LVPGGIRIGSP  445 (520)
Q Consensus       381 L~~~-G~~v~~~gt~~~~~~vd~~~-~g---------~--~~~~~~~~L~~~gI~v~~~~~Pg~~-~~-~~~~giRig~~  445 (520)
                      |.+. |+.+..+ ..++++|+++.. .+         +  +...+..+|++.||.+    .||.. +. ...+++||+..
T Consensus       382 L~~~~g~~~~~p-~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v----~pG~~F~~~~~~~~~Rls~~  456 (481)
T PTZ00377        382 LNKIEGVSCQPV-EGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVV----VPGSGFGQKPGTYHFRITIL  456 (481)
T ss_pred             HhcCCCcEeecC-CeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEE----eCCcccCCCCCCCEEEEEEC
Confidence            9874 8887654 234566766541 11         1  1223567888999999    55553 21 13468999864


Q ss_pred             CccccCCCHHHHHHHHHHHHHHHHH
Q 010008          446 AMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       446 ~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                            .+++++++..+.|.+.++.
T Consensus       457 ------~~~e~l~~~l~rl~~~~~~  475 (481)
T PTZ00377        457 ------PPEEQIEEMVKKIKEFHES  475 (481)
T ss_pred             ------CCHHHHHHHHHHHHHHHHH
Confidence                  2367888888888887764

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.91  E-value=1.1e-21  Score=206.58  Aligned_cols=335  Identities=15%  Similarity=0.067  Sum_probs=217.3

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      +.++|..+++.  +++.+.+++...+.... .+|+.   ..|   ..++.+.+.+++++.+|.+.+.  .+|.+++|+ +
T Consensus        34 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~-~~Y~~---~~G---~~~lr~~ia~~l~~~~g~~~~~--~~i~~t~G~~~  104 (402)
T PRK06107         34 SIVDLTVGEPDFDTPDHIKQAAVAAIERGE-TKYTL---VNG---TPALRKAIIAKLERRNGLHYAD--NEITVGGGAKQ  104 (402)
T ss_pred             CEEEcCCCCCCCCCCHHHHHHHHHHHHcCC-CCCCC---CCC---CHHHHHHHHHHHHHhcCCCCCh--hhEEEeCCHHH
Confidence            45788776653  46888898888775321 23332   112   2355555667888888885321  267778987 9


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEEEEc
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAG  249 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklIi~~  249 (520)
                      |+..++.++++|||+|++++|.|.++..        .+...+.  .++.++++.+ ++.+|++++++.+.+ ++++|+++
T Consensus       105 al~~~~~~~~~~gd~vl~~~p~y~~y~~--------~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~  173 (402)
T PRK06107        105 AIFLALMATLEAGDEVIIPAPYWVSYPD--------MVLANDG--TPVIVACPEEQGFKLTPEALEAAITP-RTRWLILN  173 (402)
T ss_pred             HHHHHHHHhcCCCCEEEEecCCCcCHHH--------HHHHcCC--EEEEecCCcccCCCCCHHHHHhhcCc-CceEEEEE
Confidence            9999999999999999999997765421        1223333  4555555433 467999999999876 88999988


Q ss_pred             CCCCCC--CC---CHHHHHHHHHHh-CCEEEEechhhcccccccc-cCCCC---Cc---ccEEEeccCccc--CCCCceE
Q 010008          250 ASAYPR--DF---DYPRMRQIADAV-GALLMMDMAHISGLVAASV-VADPF---KY---CDVVTTTTHKSL--RGPRGGM  314 (520)
Q Consensus       250 ~s~~p~--~~---d~~~i~~ia~~~-g~~li~D~Ah~~gli~~~~-~~~p~---~~---aDiv~~S~hK~l--~GprgG~  314 (520)
                      +|+||+  ..   ++++|+++|+++ |+++|+|+++. .+.+.+. .++..   ++   --++++|+||++  +|.|.||
T Consensus       174 ~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~-~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~  252 (402)
T PRK06107        174 APSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYD-HIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGY  252 (402)
T ss_pred             CCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhcc-ccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceee
Confidence            889887  44   467778889998 99999999843 4443321 11111   11   236778999986  7889999


Q ss_pred             EEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCC
Q 010008          315 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGS  393 (520)
Q Consensus       315 I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt  393 (520)
                      +++++      ++.+.+.........+ ++....+++..+|.. .....+...+.+.++++.+.+.|++. |+.+..+ .
T Consensus       253 ~~~~~------~~~~~~~~~~~~~~~~-~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p-~  323 (402)
T PRK06107        253 AAGPA------DLIAAINKLQSQSSSC-PSSISQAAAAAALNG-DQSFVTESVAVYKQRRDYALALLNAIPGLSCLVP-D  323 (402)
T ss_pred             eecCH------HHHHHHHHHHHhcccC-CChHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCC-C
Confidence            99987      6666655432211122 233333333334432 12223666777888888899999874 7766543 3


Q ss_pred             CCeeEEEEecC-------CCC---CHHH-HHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHH
Q 010008          394 DNHLVLVDLRP-------MGI---DGAR-VEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIAD  462 (520)
Q Consensus       394 ~~~~~~vd~~~-------~g~---~~~~-~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~  462 (520)
                      .+.++|+++..       .+.   +..+ +..++++.||.+.    ||.... .++++||+..      .+++++++..+
T Consensus       324 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~----pg~~Fg-~~~~iRis~~------~~~e~l~~~l~  392 (402)
T PRK06107        324 GAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVV----QGTAYG-LSPYFRLSIA------TSLETLEEACA  392 (402)
T ss_pred             cceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEe----CccccC-CCCeEEEEeC------CCHHHHHHHHH
Confidence            35666777631       121   3434 5567788999994    554311 2578999865      24788888888


Q ss_pred             HHHHHHH
Q 010008          463 FIHEGVE  469 (520)
Q Consensus       463 ~i~~~l~  469 (520)
                      .|.+++.
T Consensus       393 ~l~~~l~  399 (402)
T PRK06107        393 RIERAVA  399 (402)
T ss_pred             HHHHHHH
Confidence            8877664

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.91  E-value=8.4e-22  Score=207.98  Aligned_cols=342  Identities=16%  Similarity=0.136  Sum_probs=217.1

Q ss_pred             hccceEecCCC------CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC--------CCCCC
Q 010008           93 FKSLELIASEN------FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--------LDENK  158 (520)
Q Consensus        93 ~~~i~Liasen------~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg--------~~~~~  158 (520)
                      .+.|+|..++.      ++++.+.+++...+......+|+.      .....++.+...+++.+.++        ++++ 
T Consensus        33 ~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~------~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~-  105 (412)
T PTZ00433         33 KSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPP------TVGSPEAREAVATYWRNSFVHKESLKSTIKKD-  105 (412)
T ss_pred             CCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCC------CCCcHHHHHHHHHHHHhhccccccccCCCChh-
Confidence            35678876552      468889999987765422224443      11123555555566666554        4454 


Q ss_pred             CceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHH
Q 010008          159 WGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEK  236 (520)
Q Consensus       159 ~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~  236 (520)
                         +|.+|+|+ +|+..++.++++|||+|++++|.|..+..        .....|.  +++.++++++ ++.+|++++++
T Consensus       106 ---~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~--------~~~~~g~--~~~~i~~~~~~~~~~d~~~l~~  172 (412)
T PTZ00433        106 ---NVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYET--------VCKAYGI--EMRFYNCRPEKDWEADLDEIRR  172 (412)
T ss_pred             ---hEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccHHH--------HHHHcCC--EEEEEecCccccCcCCHHHHHH
Confidence               56678887 89999999999999999999998765421        2334454  5556666543 56899999999


Q ss_pred             HhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCC---C--cccEEEeccCcc
Q 010008          237 TAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K--YCDVVTTTTHKS  306 (520)
Q Consensus       237 ~i~~~~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~---~--~aDiv~~S~hK~  306 (520)
                      .++. ++|+|++++|+||+  .+   ++++|.++|+++|++||+|+++ ..+++.+....++   .  ..-+++.|++|+
T Consensus       173 ~~~~-~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~  250 (412)
T PTZ00433        173 LVDD-RTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIY-AGMVFNGATFTSVADFDTTVPRVILGGTAKN  250 (412)
T ss_pred             Hhcc-CceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccc-cccccCCCCccchhhccCCCceEEEccchhh
Confidence            8877 89999999999987  33   4778899999999999999994 4665443211111   1  123778999997


Q ss_pred             c--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-
Q 010008          307 L--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-  383 (520)
Q Consensus       307 l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-  383 (520)
                      +  +|.|.||+++..+.....++.+.+....... .+.+...+ .+++.++.......+++..+++.++++.+.+.|.+ 
T Consensus       251 ~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~q-~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  328 (412)
T PTZ00433        251 LVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGMLV-CGPCSVVQ-AALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGEC  328 (412)
T ss_pred             cCCCCeeEEEEEEeCCcccHHHHHHHHHHHhhcc-CCCChHHH-HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            5  8899999997321000013544444322211 22323323 23333443211123466677888889999999987 


Q ss_pred             CCCEEecCCCCCeeEEEEecCC---CC-CHHHHHHH-HhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHH
Q 010008          384 LGYKLVSGGSDNHLVLVDLRPM---GI-DGARVEKI-LDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFV  458 (520)
Q Consensus       384 ~G~~v~~~gt~~~~~~vd~~~~---g~-~~~~~~~~-L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~  458 (520)
                      .|+.+..+ ..+.++|+.+...   ++ +..++.+. ++++||.+.    ||... ..++++||++.      ..+++++
T Consensus       329 ~~~~~~~p-~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~----pg~~f-~~~~~iRis~~------~~~e~l~  396 (412)
T PTZ00433        329 IGLSPTMP-RGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVL----PGEIF-HMPGFTRLTIS------RPVEVLR  396 (412)
T ss_pred             CCCcccCC-CeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEe----Ccccc-CCCCeEEEEec------CCHHHHH
Confidence            47765443 2345667776431   22 34455444 457999994    55431 12579999864      2367888


Q ss_pred             HHHHHHHHHHHH
Q 010008          459 AIADFIHEGVEI  470 (520)
Q Consensus       459 ~la~~i~~~l~~  470 (520)
                      +..+.|.++++.
T Consensus       397 ~al~~l~~~~~~  408 (412)
T PTZ00433        397 EAVERIKAFCER  408 (412)
T ss_pred             HHHHHHHHHHHH
Confidence            888888877764

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.91  E-value=4.6e-21  Score=201.78  Aligned_cols=342  Identities=18%  Similarity=0.137  Sum_probs=212.0

Q ss_pred             hhccceEecCCC------CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceee
Q 010008           92 QFKSLELIASEN------FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNV  163 (520)
Q Consensus        92 ~~~~i~Liasen------~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V  163 (520)
                      ..+.|+|..++.      ++++.+++++...+......+|+.   ..|   ...+++...+++...++.  +++    +|
T Consensus        30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~---~~g---~~~lr~~ia~~l~~~~~~~~~~~----~i   99 (403)
T TIGR01265        30 EKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAP---SVG---ALAAREAVAEYLSSDLPGKLTAD----DV   99 (403)
T ss_pred             CCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCCCCCC---CCC---CHHHHHHHHHHHHhhcCCCCCHH----HE
Confidence            346788876653      467899999988776543334432   122   233443333333333333  333    45


Q ss_pred             ecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhc
Q 010008          164 QPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILF  241 (520)
Q Consensus       164 ~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~  241 (520)
                      .+++|+ +|+.+++.+++++||+|++++|.|....        ......|.  +++.++++++ ++.+|++++++++++ 
T Consensus       100 i~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~--------~~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~~~~-  168 (403)
T TIGR01265       100 VLTSGCSQAIEICIEALANPGANILVPRPGFPLYD--------TRAAFSGL--EVRLYDLLPEKDWEIDLDGLEALADE-  168 (403)
T ss_pred             EEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHH--------HHHHHcCC--EEEEecCCcccCCccCHHHHHHHhCc-
Confidence            567776 9999999999999999999998765331        12233454  5556555433 468999999999877 


Q ss_pred             CCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC----ccc-EEEeccCccc--CC
Q 010008          242 RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCD-VVTTTTHKSL--RG  309 (520)
Q Consensus       242 ~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~----~aD-iv~~S~hK~l--~G  309 (520)
                      +++++++++|+||+  ..+   +++|.++|+++|+++|+|++ |..+.+.+....++.    ... +++.|++|++  +|
T Consensus       169 ~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~-y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG  247 (403)
T TIGR01265       169 KTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEI-YGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPG  247 (403)
T ss_pred             CccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcc-ccccccCCCCccchhhhccCCcEEEEeecccccCCCc
Confidence            78999999888887  444   88899999999999999998 445554431111221    122 6779999974  88


Q ss_pred             CCceEEEeeCCC-cchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCE
Q 010008          310 PRGGMIFFKKDP-VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYK  387 (520)
Q Consensus       310 prgG~I~~~~~~-~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~  387 (520)
                      .|.||++++++. ....++.+.+...... ..+ ++.....++..++.......+++..+++.++++.+.+.|... |+.
T Consensus       248 lRiG~~v~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  325 (403)
T TIGR01265       248 WRLGWIIIHDPHGIFRDTVLQGLKNLLQR-ILG-PATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKDIPGLV  325 (403)
T ss_pred             ceEEEEEEeCchhhhHHHHHHHHHHHhhh-hcC-CChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence            999999985420 0000133333222111 112 233333444445543222234667788888899999999875 776


Q ss_pred             EecCCCCCeeEEEEecCCC----CCHHHHHH-HHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHH
Q 010008          388 LVSGGSDNHLVLVDLRPMG----IDGARVEK-ILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIAD  462 (520)
Q Consensus       388 v~~~gt~~~~~~vd~~~~g----~~~~~~~~-~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~  462 (520)
                      +..+ ..+.++|+++....    .+..++.+ ++++.||.+    .||... ..+++|||+..      ..++.+++..+
T Consensus       326 ~~~p-~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v----~pg~~f-~~~~~iRis~~------~~~~~l~~~l~  393 (403)
T TIGR01265       326 CPKP-EGAMYLMVKLELELFPEIKDDVDFCEKLVREESVIC----LPGSAF-GLPNWVRITIT------VPESMLEEACS  393 (403)
T ss_pred             ecCC-CceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEE----eCcccc-CCCCeEEEEec------CCHHHHHHHHH
Confidence            5433 23567788775321    24555544 468899999    455431 13679999864      23566777777


Q ss_pred             HHHHHHH
Q 010008          463 FIHEGVE  469 (520)
Q Consensus       463 ~i~~~l~  469 (520)
                      .|.++++
T Consensus       394 ~l~~~~~  400 (403)
T TIGR01265       394 RIKEFCE  400 (403)
T ss_pred             HHHHHHH
Confidence            6666553

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.90  E-value=2.5e-21  Score=207.71  Aligned_cols=333  Identities=16%  Similarity=0.144  Sum_probs=213.8

Q ss_pred             CCCCChHHHHHHHhhhhh-ccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHH---H
Q 010008          101 SENFTSRAVMEAVGSCLT-NKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV---Y  176 (520)
Q Consensus       101 sen~~~~~V~ea~~s~l~-~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~---l  176 (520)
                      ....++|.+.+++.+... ..|+ .|...   .-.....++....++++++++|++.    +.+.+++|+.+....   +
T Consensus        78 ~~~~~~p~i~~~~~~~~~~~~~t-pYq~e---~~sqG~lel~~~~~~~la~l~G~~~----~~l~~~~GA~a~~~~l~~~  149 (481)
T PRK04366         78 CTMKYNPKINEKVARLPGFAELH-PLQPE---ETVQGALELMYELQEWLKEITGMDA----VTLQPAAGAHGELTGLLMI  149 (481)
T ss_pred             cCCCCCHHHHHHHHhCcchhcCC-CCCCh---hhhhHHHHHHHHHHHHHHHHhCCCc----eEEEeCcHHHHHHHHHHHH
Confidence            345688999998876511 1221 12100   0111223444566789999999974    467778888554432   2


Q ss_pred             H-hhCCCCC----EEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCC
Q 010008          177 T-AILKPHD----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS  251 (520)
Q Consensus       177 ~-all~pGD----~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s  251 (520)
                      . .++++||    +|+++++.|+.+..        .+...|.  +++.++++ +++.+|++++++++++ ++++|++++|
T Consensus       150 r~~~~~~Gd~~~~~Vlv~~~~hp~~~~--------~~~~~G~--~vv~v~~~-~~~~~D~e~L~~~i~~-~t~~V~v~~P  217 (481)
T PRK04366        150 RAYHEARGDTKRTEVIVPDSAHGTNPA--------SAAMAGF--KVVEIPSN-EDGLVDLEALKAAVGE-DTAALMLTNP  217 (481)
T ss_pred             HHHhhccCcCCCCEEEEcCCccHhHHH--------HHHHcCC--EEEEeecC-CCCCcCHHHHHhhccc-CCeEEEEeCC
Confidence            2 3467887    99999988765532        2234454  66666665 4688999999999987 8999988887


Q ss_pred             CCCC-C-CCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEEEeccCcccCCCC------ceEEEeeCCCc
Q 010008          252 AYPR-D-FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR------GGMIFFKKDPV  322 (520)
Q Consensus       252 ~~p~-~-~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S~hK~l~Gpr------gG~I~~~~~~~  322 (520)
                      +..+ . .|+++|+++|+++|+++++|+||..++..  .. .|-. ++|++++++||||.+|.      .|++++++   
T Consensus       218 n~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g--~~-~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~---  291 (481)
T PRK04366        218 NTLGLFERNILEIAEIVHEAGGLLYYDGANLNAILG--KA-RPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKE---  291 (481)
T ss_pred             CCccccchHHHHHHHHHHHcCCEEEEEecChhhhcc--cC-CccccCCCEEEEechhhcCCCCCCCCCCeeeeeehh---
Confidence            7433 3 47999999999999999999998766432  11 2223 79999999999986554      36888876   


Q ss_pred             chhhHHHhhccc-------CC-CCC----------CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC
Q 010008          323 LGVELESAINNA-------VF-PGL----------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL  384 (520)
Q Consensus       323 ~~~~l~~~i~~~-------~~-p~~----------~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~  384 (520)
                         ++.+++...       .+ ...          .++.+...+.+....+..+...++++..++...++++|++.|.+.
T Consensus       292 ---~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~  368 (481)
T PRK04366        292 ---ELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI  368 (481)
T ss_pred             ---hhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence               333332100       00 000          011111112222223444444556777888899999999999885


Q ss_pred             CCEEecCCCCCeeEEEEe---cCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHH
Q 010008          385 GYKLVSGGSDNHLVLVDL---RPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA  461 (520)
Q Consensus       385 G~~v~~~gt~~~~~~vd~---~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la  461 (520)
                       +.+..++...+.++++.   ...+++..++.+.|.+.||.+.....|.    ...+.+|++....+|    ++|+++++
T Consensus       369 -~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~----~~~~~l~is~~e~~t----~edid~l~  439 (481)
T PRK04366        369 -YDLPYDRPCMHEFVLSGKKLKETGVRTLDIAKRLLDYGFHPPTIYFPL----IVPEALMIEPTETES----KETLDAFI  439 (481)
T ss_pred             -CcccCCCCeeEEEEEECccccccCCCHHHHHHHHHHCCccCCcccccc----ccCCeEEEcccCCCC----HHHHHHHH
Confidence             44443222224455553   2234567889999999999875332221    125689999887665    89999999


Q ss_pred             HHHHHHHHHH
Q 010008          462 DFIHEGVEIT  471 (520)
Q Consensus       462 ~~i~~~l~~~  471 (520)
                      +.+.++.+..
T Consensus       440 ~~l~~i~~~~  449 (481)
T PRK04366        440 AAMKQIAEEA  449 (481)
T ss_pred             HHHHHHHHHH
Confidence            9999887644

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.90  E-value=4.3e-22  Score=206.37  Aligned_cols=314  Identities=16%  Similarity=0.125  Sum_probs=207.1

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeec-CChH-
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP-LSGS-  169 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~-~sGs-  169 (520)
                      +.|+|..++|+  +++.+++++...+.. + .+||..      . ..+++    +.+++++|++++    +|.+ ++|+ 
T Consensus        35 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~y~~~------~-~~~lr----~~ia~~~~~~~~----~i~~~~~Ga~   97 (361)
T PRK00950         35 SIIKLGSNENPLGPSPKAVEAIEKELSK-I-HRYPEP------D-APELR----EALSKYTGVPVE----NIIVGGDGMD   97 (361)
T ss_pred             ceEEccCCCCCCCCCHHHHHHHHHHHHh-h-cCCCCC------C-HHHHH----HHHHHHhCCCHH----HEEEeCCCHH
Confidence            55888888774  568888888766542 1 234431      1 13343    667788899875    4555 7887 


Q ss_pred             HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 010008          170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  249 (520)
Q Consensus       170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~  249 (520)
                      +++..++.++++|||+|++++|.|..+.        ......|.  +++.++.+ +++.+|++++++.++. ++++|+++
T Consensus        98 ~~i~~~~~~~~~~gd~vlv~~p~y~~~~--------~~~~~~g~--~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~v~~~  165 (361)
T PRK00950         98 EVIDTLMRTFIDPGDEVIIPTPTFSYYE--------ISAKAHGA--KPVYAKRE-EDFSLDVDSVLNAITE-KTKVIFLC  165 (361)
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCChHHHH--------HHHHHcCC--EEEEeecC-CCCCcCHHHHHHHhcc-CCCEEEEe
Confidence            7788888888999999999998664331        11233454  55565544 4568999999998876 89999988


Q ss_pred             CCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCccc--EEEeccCccc--CCCCceEEEeeCCCcc
Q 010008          250 ASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCD--VVTTTTHKSL--RGPRGGMIFFKKDPVL  323 (520)
Q Consensus       250 ~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aD--iv~~S~hK~l--~GprgG~I~~~~~~~~  323 (520)
                      +++||+  ..+.+++.++|+++|+++++|++|. ++..... ...+...|  +++.|++|++  +|.|.||+++++    
T Consensus       166 ~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~-~~~~~~~-~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~----  239 (361)
T PRK00950        166 TPNNPTGNLIPEEDIRKILESTDALVFVDEAYV-EFAEYDY-TPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPE----  239 (361)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHCCcEEEEECchh-hhCccch-HHHHHhcCCEEEEEeehHhhcCchhhcchhcCCH----
Confidence            888887  7899999999999999999999964 3331111 11011122  6778999987  578899999987    


Q ss_pred             hhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEe
Q 010008          324 GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDL  402 (520)
Q Consensus       324 ~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~-~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~  402 (520)
                        ++.+.+.....+..  . +....++...+++   ..+ +++..+++.++++.+.+.|.   +++..+  .+.++|+++
T Consensus       240 --~~~~~~~~~~~~~~--~-~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~l~---~~~~~~--~~~~i~~~~  306 (361)
T PRK00950        240 --WLIDYYMRAKTPFS--L-TRLSQAAAIAALS---DKEYIEKSIEHGIKSREYLYNELP---FKVYPS--EANFVLVDV  306 (361)
T ss_pred             --HHHHHHHHhcCCCC--C-CHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhhcC---eeECCC--cceEEEEEC
Confidence              66666554332221  1 1222222222332   223 35555556666666665553   554432  345677777


Q ss_pred             cCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          403 RPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       403 ~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                        .+.+..++.+.|.++||.+..    |.. +...+++|||++.       +.+|++++.+.|++++
T Consensus       307 --~~~~~~~~~~~l~~~gv~v~~----~~~f~~~~~~~lRis~~-------~~~~~~~l~~~L~~il  360 (361)
T PRK00950        307 --TPMTAKEFCEELLKRGVIVRD----CTSFRGLGDYYIRVSIG-------TFEENERFLEILKEIV  360 (361)
T ss_pred             --CCCCHHHHHHHHHHCCEEEee----CCccCCCCCCeEEEECC-------CHHHHHHHHHHHHHHh
Confidence              345778888888889999954    322 1223578999964       3689999999998765

>PLN02483 serine palmitoyltransferase

Probab=99.90  E-value=1.2e-21  Score=210.36  Aligned_cols=320  Identities=18%  Similarity=0.179  Sum_probs=204.2

Q ss_pred             hHHHHHHHhhhhhccCCCCCCCCCC-CCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCC
Q 010008          106 SRAVMEAVGSCLTNKYSEGLPGKRY-YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHD  184 (520)
Q Consensus       106 ~~~V~ea~~s~l~~~y~~G~p~~ry-y~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD  184 (520)
                      ++.|.+++..     |.-+..+.|. |+.....+++|    +.+++++|.+.     .|..++|+.+|.+++.++++|||
T Consensus       121 ~~~~~~ai~~-----~g~~~~~sr~~~g~~~~~~ele----~~lA~~~g~~~-----ai~~~~G~~an~~~i~al~~~Gd  186 (489)
T PLN02483        121 TPRVIESLKK-----YSASTCSSRVDGGTTKLHRELE----ELVARFVGKPA-----AIVFGMGYATNSTIIPALIGKGG  186 (489)
T ss_pred             HHHHHHHHHH-----hCCCCCccccccCCcHHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHhCCCCC
Confidence            4566666543     3333334453 44456666666    67889999754     45668999999999999999999


Q ss_pred             EEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc------CC-----cEEEEcCCC-
Q 010008          185 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF------RP-----KLIIAGASA-  252 (520)
Q Consensus       185 ~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~------~p-----klIi~~~s~-  252 (520)
                      .|++.++.|.+...        .+...|.  +++.++.+      |++++++.+++.      ++     |++++..+. 
T Consensus       187 ~Vi~d~~~h~s~~~--------~~~~~Ga--~v~~~~~~------d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~  250 (489)
T PLN02483        187 LIISDSLNHNSIVN--------GARGSGA--TIRVFQHN------TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIY  250 (489)
T ss_pred             EEEEcchhhHHHHH--------HHHHcCC--eEEEEeCC------CHHHHHHHHHhhhhccccccccCCceEEEEECCCC
Confidence            99999988766432        2344565  55555432      456665554320      22     545554332 


Q ss_pred             --CCCCCCHHHHHHHHHHhCCEEEEechhhcccccc-c--ccC-CCC--CcccEEEeccCcccCCCCceEEEeeCCCcch
Q 010008          253 --YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-S--VVA-DPF--KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLG  324 (520)
Q Consensus       253 --~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~-~--~~~-~p~--~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~  324 (520)
                        .+...++++|.++|+++|++|++|++|..|.... +  ... ..+  ...||+++|+||++ |+.||++++++     
T Consensus       251 s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~-g~~GG~i~~~~-----  324 (489)
T PLN02483        251 SMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSF-GSCGGYIAGSK-----  324 (489)
T ss_pred             CCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhc-ccCceEEEcCH-----
Confidence              2337899999999999999999999997664321 1  100 111  25789999999998 56789999887     


Q ss_pred             hhHHHhhcccCCCCC-CCCChHHHHHHHHHHHHHhcCc----hhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEE
Q 010008          325 VELESAINNAVFPGL-QGGPHNHTIGGLAVCLKHAQSP----EFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVL  399 (520)
Q Consensus       325 ~~l~~~i~~~~~p~~-~g~p~~~~iaala~al~~~~~~----~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~  399 (520)
                       ++.+.+........ .++.+...+++...+|+.+...    ...+..+++.++++++.+.|++.|+.+..+ .++..++
T Consensus       325 -~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~G~~v~~~-~~sp~~~  402 (489)
T PLN02483        325 -ELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKMGFEVLGD-NDSPVMP  402 (489)
T ss_pred             -HHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHCCCcccCC-CCCCEEE
Confidence             67777664322211 2222333344444566644321    235567889999999999999989877643 2233333


Q ss_pred             EEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          400 VDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       400 vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +-+.. ..+...+.+.|.+.||.+.....|..  +...+.+||+.++..    +++|++++++.|++++..
T Consensus       403 l~l~~-~~~~~~~~~~Ll~~GI~v~~~~fp~~--p~~~~~vRi~isa~~----t~edId~~l~~L~~~~~~  466 (489)
T PLN02483        403 IMLYN-PAKIPAFSRECLKQNVAVVVVGFPAT--PLLLARARICISASH----SREDLIKALEVISEVGDL  466 (489)
T ss_pred             EEECC-HHHHHHHHHHHHHCCcEEeeeCCCCC--CCCCceEEEEeCCCC----CHHHHHHHHHHHHHHHHH
Confidence            32211 11234566667778999964322322  333578999877543    489999999999988753

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=8.4e-22  Score=205.13  Aligned_cols=318  Identities=18%  Similarity=0.163  Sum_probs=213.2

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      +.|+|..++|+  +++.+.+++.......  ..||..   .|    +.+    ++.+++++|++++    +|.+++|+ +
T Consensus        37 ~~i~l~~~~~~~~~~~~~~~al~~~~~~~--~~Y~~~---~g----~~l----r~~ia~~~~~~~~----~i~~t~G~~~   99 (371)
T PRK05166         37 RIAKLGSNENPLGPSPAVRRAFADIAELL--RLYPDP---QG----RAL----REAIAARTGVPAD----RIILGNGSED   99 (371)
T ss_pred             ceEEcCCCCCCCCCCHHHHHHHHHHHHHh--hcCCCC---cH----HHH----HHHHHHHhCcCHH----HEEEcCCHHH
Confidence            45888888774  6788999887643321  234431   11    233    3567778898875    56778998 8


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  250 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~  250 (520)
                      ++..++.++++|||+|++.+|.|..+..        .....|.  +++.++++ +++.+|++++++.+++ ++|+|++++
T Consensus       100 ~l~~~~~~~~~~gd~vli~~P~y~~~~~--------~~~~~g~--~~~~v~~~-~~~~~~~~~l~~~~~~-~~~~v~l~~  167 (371)
T PRK05166        100 LIAVICRAVLRPGDRVVTLYPSFPLHED--------YPTMMGA--RVERVTVT-PDLGFDLDALCAAVAR-APRMLMFSN  167 (371)
T ss_pred             HHHHHHHHhcCCCCEEEEcCCChHHHHH--------HHHHcCC--eEEEeecC-CCCCCCHHHHHHhhhc-CCCEEEEeC
Confidence            8888889999999999999988754421        2234454  56666666 3578999999999877 899999999


Q ss_pred             CCCCC--CCCHHHHHHHHHH--hCCEEEEechhhcccccccccCCCC---C--c-ccEEEeccCccc--CCCCceEEEee
Q 010008          251 SAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPF---K--Y-CDVVTTTTHKSL--RGPRGGMIFFK  318 (520)
Q Consensus       251 s~~p~--~~d~~~i~~ia~~--~g~~li~D~Ah~~gli~~~~~~~p~---~--~-aDiv~~S~hK~l--~GprgG~I~~~  318 (520)
                      ++||+  .++.+++.++++.  .++++++|+++ ..+...+..++.+   .  + .-|++.|++|++  +|.|.||+++.
T Consensus       168 p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~  246 (371)
T PRK05166        168 PSNPVGSWLTADQLARVLDATPPETLIVVDEAY-AEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVS  246 (371)
T ss_pred             CCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcH-HHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecC
Confidence            99987  7788777777764  47899999994 4444333222222   1  1 127789999986  89999998875


Q ss_pred             CCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeE
Q 010008          319 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLV  398 (520)
Q Consensus       319 ~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~  398 (520)
                      ++     ++.+.+.+...+  .+.+...+.++ ..++..  ...+++..+.+.++++.+.+.|++.|+.+..++  ..++
T Consensus       247 ~~-----~l~~~~~~~~~~--~~~~~~~q~~~-~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~p~~--g~fl  314 (371)
T PRK05166        247 DP-----ELVGLLDRVRTP--FNVNGAAQAAA-LAALDD--EEHLAKGVALALAERERLKKELAEMGYRIAPSR--ANFL  314 (371)
T ss_pred             CH-----HHHHHHHHhccC--CCCCHHHHHHH-HHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCcCeeCCCc--CCEE
Confidence            43     666665443222  22222222222 223331  123466677888888999999998888764432  4556


Q ss_pred             EEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          399 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       399 ~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      |+++.   .+..++.+.|.++||.+.    ||.. ...+++|||++.       +.++++++.+.|++++
T Consensus       315 ~~~~~---~~~~~l~~~l~~~gi~v~----p~~~-~~~~~~iRi~~~-------~~~~~~~l~~~l~~i~  369 (371)
T PRK05166        315 FFDAR---RPASAVAEALLRQGVIVK----PWKQ-PGFETFIRVSIG-------SPEENDHFVAALDKVL  369 (371)
T ss_pred             EEeCC---CCHHHHHHHHHHCCeEEe----cCCC-CCCCCeEEEEcC-------CHHHHHHHHHHHHHHh
Confidence            77753   245677788878899995    4432 123679999865       2578899988887654

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.90  E-value=7.4e-22  Score=203.09  Aligned_cols=301  Identities=15%  Similarity=0.106  Sum_probs=187.9

Q ss_pred             hHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh-HHHHHHHHHhhCCCCC
Q 010008          106 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAILKPHD  184 (520)
Q Consensus       106 ~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG-s~A~~~~l~all~pGD  184 (520)
                      .|.+.++....+ ++|. |        ..+..+++|    +.+++++|++++    ++.+++| ++||..++.++++|||
T Consensus        35 ~~~~~~~~~~~~-~~~~-g--------~~~~~~~Le----~~lA~~~g~~~e----~ilv~~gg~~a~~~~~~al~~~gd   96 (346)
T TIGR03576        35 GFKIDEEDLELL-ETYV-G--------PAIFEEKVQ----ELGREHLGGPEE----KILVFNRTSSAILATILALEPPGR   96 (346)
T ss_pred             ChhHHHHHHHHH-HHhc-C--------CHHHHHHHH----HHHHHHcCCCcc----eEEEECCHHHHHHHHHHHhCCCCC
Confidence            466777665544 3331 2        123344555    788999999765    3344555 4999999999999999


Q ss_pred             EEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC-C---CCHH
Q 010008          185 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-D---FDYP  260 (520)
Q Consensus       185 ~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~-~---~d~~  260 (520)
                      +|+++.++...|.+..     ..+.+.|.  +++.+        .|+++++.  .+ ++++|+++.++..+ .   .|++
T Consensus        97 ~Vli~~~d~p~~~s~~-----~~~~l~ga--~~~~~--------~~l~~l~~--~~-~~~lIiitg~s~~G~v~~~~~L~  158 (346)
T TIGR03576        97 KVVHYLPEKPAHPSIP-----RSCKLAGA--EYFES--------DELSELKK--ID-GTSLVVITGSTMDLKVVSEEDLK  158 (346)
T ss_pred             EEEECCCCCCCchhHH-----HHHHHcCC--EEecc--------CCHHHHhh--Cc-CceEEEEECCCCCCcccCHHHHH
Confidence            9998655444443221     12344554  32221        24555432  23 68888876544333 3   5889


Q ss_pred             HHHHHHHHhCCEEEEechhhcccccc-cccCCCCC-cccEEEeccCcccCCCCceEEEeeCCCcchhhHHHhhcccCCCC
Q 010008          261 RMRQIADAVGALLMMDMAHISGLVAA-SVVADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPG  338 (520)
Q Consensus       261 ~i~~ia~~~g~~li~D~Ah~~gli~~-~~~~~p~~-~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~  338 (520)
                      +|.++|+++|++|++|+||..|.... +. ..... ++|++++|+||+++|+|+|++++++      ++.+.+.....+.
T Consensus       159 ~i~~la~~~~~~livDEAy~~~~~~~~~~-~~~~~~~~divv~s~SKalaG~r~G~v~~~~------~li~~l~~~~~~~  231 (346)
T TIGR03576       159 RVIKQAKSKEAIVLVDDASGARVRRLYGQ-PPALDLGADLVVTSTDKLMDGPRGGLLAGRK------ELVDKIKSVGEQF  231 (346)
T ss_pred             HHHHHHHHcCCEEEEECCccccccccCCC-CCHHHcCCcEEEeccchhccccceEEEEeCH------HHHHHHHHhhcCc
Confidence            99999999999999999998765321 11 11111 4789999999999999999999998      6777776554443


Q ss_pred             CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhh
Q 010008          339 LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDM  418 (520)
Q Consensus       339 ~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~  418 (520)
                      ..+.+.. ..++...+|+...   .+...+.+.++++.+.+.+.+  +.+...  ...++++++...+ +.+.+.++|++
T Consensus       232 ~~s~~~~-~~~aa~~aL~~~~---~~~~~~~l~~r~~~~~~~l~~--~~~~~~--~~~f~~~~~~~~~-~~~~~~~ll~~  302 (346)
T TIGR03576       232 GLEAQAP-LLAAVVRALEEFE---LSRIRDAFKRKEEVYLRLFDK--LNVERT--PTGFVIKGVEEEK-LIEIGLDLLRN  302 (346)
T ss_pred             ccCccHH-HHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHh--CCCCcC--CCeEEEEeCCCCC-HHHHHHHHHHh
Confidence            3333333 4444445676432   244455666666666666653  444332  2346787875311 23678889999


Q ss_pred             cCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHH---HHHHHHHHHHHHH
Q 010008          419 ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK---EFVAIADFIHEGV  468 (520)
Q Consensus       419 ~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~---d~~~la~~i~~~l  468 (520)
                      .||.+.    |+...+..++++||+...      .++   +++.+.+.|++.+
T Consensus       303 ~gV~v~----~~~~f~~~~~~vRis~~~------~~~~~~~~~~~~~al~~~~  345 (346)
T TIGR03576       303 YGIITI----TAVGMPGASKTLRFDLAA------KDAERIGDDYLVEAVKDSL  345 (346)
T ss_pred             CCEEEe----CCcccCCCCCeEEEEEec------ChHHhcCHHHHHHHHHhcc
Confidence            999995    443211236799997531      123   6999988887643

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=1.3e-21  Score=203.87  Aligned_cols=321  Identities=14%  Similarity=0.110  Sum_probs=209.5

Q ss_pred             cceEecCCCC--ChHHHHHHHhhhhhccC-CCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC----CCCCCCceeeecCC
Q 010008           95 SLELIASENF--TSRAVMEAVGSCLTNKY-SEGLPGKRYYGGNEYIDELETLCQKRALAAFN----LDENKWGVNVQPLS  167 (520)
Q Consensus        95 ~i~Liasen~--~~~~V~ea~~s~l~~~y-~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg----~~~~~~~~~V~~~s  167 (520)
                      .+.|..+||+  +|+.+++++.+.+.+.+ ..+||.    .|   ..++++...+++.+.++    ++++    +|.+++
T Consensus        30 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~----~G---~~~Lr~aia~~~~~~~~~~~~v~~~----~I~it~   98 (374)
T PRK02610         30 LDRLDTNEFPYDLPPDLKQKLAWLYQQGIESNRYPD----GG---HEALKQAIAEYVNESAAGSSQITPA----NISVGN   98 (374)
T ss_pred             eeEecCCCCCCCCCHHHHHHHHHHHhhcccccCCCC----Cc---hHHHHHHHHHHhCccccccCCCCHH----HEEEcC
Confidence            5778888874  78999999987666532 234542    12   23455444445544432    5554    677899


Q ss_pred             hH-HHHHHHHHhhCCCCC-EEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh---cC
Q 010008          168 GS-PANFEVYTAILKPHD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FR  242 (520)
Q Consensus       168 Gs-~A~~~~l~all~pGD-~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~---~~  242 (520)
                      |+ +++..++.+++.+|| +|++++|.|.++.        ..+...|.  +++.++++.+++.+|+++++++++.   .+
T Consensus        99 Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~--------~~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~  168 (374)
T PRK02610         99 GSDELIRSLLIATCLGGEGSILVAEPTFSMYG--------ILAQTLGI--PVVRVGRDPETFEIDLAAAQSAIEQTQNPP  168 (374)
T ss_pred             ChHHHHHHHHHHHcCCCCCeEEEcCCChHHHH--------HHHHHcCC--EEEEecCCcccCCCCHHHHHHHHHhhcCCC
Confidence            98 888888888888886 8999999875442        12344565  6677777655689999999998874   48


Q ss_pred             CcEEEEcCCCCCC--CCCHHHHHHHHHH-hCCEEEEechhhcccccccccCCCCC-cc-cEEEeccCccc--CCCCceEE
Q 010008          243 PKLIIAGASAYPR--DFDYPRMRQIADA-VGALLMMDMAHISGLVAASVVADPFK-YC-DVVTTTTHKSL--RGPRGGMI  315 (520)
Q Consensus       243 pklIi~~~s~~p~--~~d~~~i~~ia~~-~g~~li~D~Ah~~gli~~~~~~~p~~-~a-Div~~S~hK~l--~GprgG~I  315 (520)
                      +|+|+++.|+||+  .++.+++.++++- +|++||+|+++ ..+..... ...+. +. -|++.|++|++  +|.|.||+
T Consensus       169 ~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y-~~~~~~~~-~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~  246 (374)
T PRK02610        169 VRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAY-FEFSQTTL-VGELAQHPNWVILRTFSKAFRLAAHRVGYA  246 (374)
T ss_pred             ceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccc-cccCccch-HHHHhcCCCEEEEEecchhccCcccceeee
Confidence            9999999999997  6676666665532 48999999985 33321110 01111 21 27789999986  89999999


Q ss_pred             EeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCC
Q 010008          316 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSD  394 (520)
Q Consensus       316 ~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~  394 (520)
                      ++++      ++.+.+.....+.  +.+...+.++ ..+++..  ..+.+..+++.++++.+.+.|.+. |+.+...  .
T Consensus       247 v~~~------~l~~~l~~~~~~~--~~~~~~q~a~-~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~--~  313 (374)
T PRK02610        247 IGHP------ELIAVLEKVRLPY--NLPSFSQLAA-QLALEHR--QELLAAIPEILQERDRLYQALQELPQLRVWPS--A  313 (374)
T ss_pred             ecCH------HHHHHHHHhcCCC--CCCHHHHHHH-HHHhcCH--HHHHHHHHHHHHHHHHHHHHHHhCCCcEeCCC--c
Confidence            9977      6777665543222  2233333332 2344321  233444455556677788888764 6665432  3


Q ss_pred             CeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          395 NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       395 ~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ..++|+++. .+.+..++.+.|.+.||.+..          .++++||++..       .+++++..+.|.+++.
T Consensus       314 g~f~~~~l~-~~~~~~~~~~~l~~~gi~v~~----------~~~~lRls~~~-------~~~~~~~l~~l~~~l~  370 (374)
T PRK02610        314 ANFLYLRLS-QDAALAALHQALKAQGTLVRH----------TGGGLRITIGT-------PEENQRTLERLQAALT  370 (374)
T ss_pred             ceEEEEeCC-CCCCHHHHHHHHHHCCEEEEe----------CCCeEEEeCCC-------HHHHHHHHHHHHHHHh
Confidence            456787774 345677788889999999842          14689998641       4678888888877664

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.90  E-value=2.4e-21  Score=202.85  Aligned_cols=329  Identities=12%  Similarity=0.089  Sum_probs=211.2

Q ss_pred             hHHHHHHHhhhhhccCCCCCCCCC-CCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCC
Q 010008          106 SRAVMEAVGSCLTNKYSEGLPGKR-YYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHD  184 (520)
Q Consensus       106 ~~~V~ea~~s~l~~~y~~G~p~~r-yy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD  184 (520)
                      +|.++++....+ .+|.-|+.+.| ||+-....+++|    +++++++|.+.     .+..+||+.|+..++.++++|||
T Consensus        14 ~~~~~~~~~~a~-~~~g~~~~~sr~~yg~~~~~~~LE----~~lA~~~g~e~-----al~~~sG~~a~~~~i~~l~~~GD   83 (392)
T PLN03227         14 SPTLRQTALESL-SHYGCGSCGPRGFYGTIDAHLELE----QCMAEFLGTES-----AILYSDGASTTSSTVAAFAKRGD   83 (392)
T ss_pred             CHHHHHHHHHHH-HHhCCCCcccccccCChHHHHHHH----HHHHHHhCCCc-----EEEecCcHHHHHHHHHHhCCCCC
Confidence            678888887766 35666666655 565555666777    68899999975     36679999999999999999999


Q ss_pred             EEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh----------cCCcEEEEcCCCCC
Q 010008          185 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL----------FRPKLIIAGASAYP  254 (520)
Q Consensus       185 ~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~----------~~pklIi~~~s~~p  254 (520)
                      +|++.++.|++.+.        .+.+.+.  +++.++.+   ..-|++.+.+.+..          .++++|++..+.++
T Consensus        84 ~Vl~~~~~h~s~~~--------~~~l~~~--~~~~~~~~---d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~  150 (392)
T PLN03227         84 LLVVDRGVNEALLV--------GVSLSRA--NVRWFRHN---DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKN  150 (392)
T ss_pred             EEEEeccccHHHHH--------HHHHcCC--eEEEeCCC---CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCC
Confidence            99999987765432        1222332  44444332   11233443333321          15788888866555


Q ss_pred             C--CCCHHHHHHHHHHhCCEEEEechhhcccccc---ccc----CCCCCcccEEEeccCcccCCCCceEEEeeCCCcchh
Q 010008          255 R--DFDYPRMRQIADAVGALLMMDMAHISGLVAA---SVV----ADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGV  325 (520)
Q Consensus       255 ~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~---~~~----~~p~~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~  325 (520)
                      +  ..|+++|+++|+++|+++++|++|..|....   +..    ..|..++|++++|++|.+ ||.||++++++      
T Consensus       151 ~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~-g~~gg~v~~~~------  223 (392)
T PLN03227        151 TGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAF-GSVGGMTVGSE------  223 (392)
T ss_pred             CCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhh-hccCcEEecCH------
Confidence            3  7899999999999999999999998664421   111    122346899999999975 79999998887      


Q ss_pred             hHHHhhcccCCCCCCCCC--hHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecC---------CCC
Q 010008          326 ELESAINNAVFPGLQGGP--HNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG---------GSD  394 (520)
Q Consensus       326 ~l~~~i~~~~~p~~~g~p--~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~---------gt~  394 (520)
                      ++.+.+.........++.  .....++++ ++.....  ..+..+++.++.++|.+.|++.+++.+.+         .+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~p~~~~aa~~-al~~~~~--~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~~~~~~~  300 (392)
T PLN03227        224 EVVDHQRLSGSGYCFSASAPPFLAKADAT-ATAGELA--GPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSDPI  300 (392)
T ss_pred             HHHHHHHHhCcCccccCCCCHHHHHHHHH-HHHHHhc--CHHHHHHHHHHHHHHHHHHHhcCCccccccccccccCCCCC
Confidence            555544322222233432  223344443 4544332  24567888999999999998765543211         123


Q ss_pred             CeeEEEEecCCCCC--------HHHHHHHHhhcCeEEcCCC-CCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHH
Q 010008          395 NHLVLVDLRPMGID--------GARVEKILDMASITLNKNS-VPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  464 (520)
Q Consensus       395 ~~~~~vd~~~~g~~--------~~~~~~~L~~~gI~v~~~~-~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i  464 (520)
                      ++++-+.+.+...+        ...+.+.|.+.||.+.... .|... ....+..||+.++    .+.+++|++++++.|
T Consensus       301 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~----~~~t~eei~~~~~~l  376 (392)
T PLN03227        301 SPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVAN----ASHTREDIDKLLTVL  376 (392)
T ss_pred             CCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEec----CCCCHHHHHHHHHHH
Confidence            45555555321111        1367778888999885311 11100 1112467999766    456799999999999


Q ss_pred             HHHHHHH
Q 010008          465 HEGVEIT  471 (520)
Q Consensus       465 ~~~l~~~  471 (520)
                      +++++..
T Consensus       377 ~~~~~~~  383 (392)
T PLN03227        377 GEAVEAI  383 (392)
T ss_pred             HHHHHHH
Confidence            9998654

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.90  E-value=1.3e-21  Score=202.54  Aligned_cols=317  Identities=14%  Similarity=0.110  Sum_probs=205.4

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      +.++|..+||+  +|+.+++++...+.. . ..||..       ..+.+    ++.++++++++++    +|.+++|+ +
T Consensus        21 ~~i~l~~~~~~~~~p~~~~~a~~~~~~~-~-~~y~~~-------~~~~l----r~~ia~~~~~~~~----~i~it~Ga~~   83 (356)
T PRK08056         21 QLLDFSANINPLGMPVSLKRAIIDNLDC-A-ERYPDV-------EYRHL----HQALARHHQVPAS----WILAGNGETE   83 (356)
T ss_pred             hEEEeccccCCCCCCHHHHHHHHHHHHh-c-ccCcCc-------cHHHH----HHHHHHHhCcChh----hEEECCCHHH
Confidence            45889888885  689999999876542 1 234421       12333    3567778899886    56678888 8


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEEEEc
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAG  249 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklIi~~  249 (520)
                      ++..++.++ .||| +++++|.+..+.        ..+...|.  +++.++++++ ++.+| +++++.+.+ ++|+|+++
T Consensus        84 ~l~~~~~~l-~~g~-viv~~P~y~~~~--------~~~~~~g~--~~~~v~~~~~~~~~~~-~~~~~~~~~-~~k~v~l~  149 (356)
T PRK08056         84 SIFAVVSGL-KPRR-AMIVTPGFAEYR--------RALQQVGC--EIRRYSLREADGWQLT-DAILEALTP-DLDCLFLC  149 (356)
T ss_pred             HHHHHHHHh-CCCC-EEEeCCCcHHHH--------HHHHHcCC--eEEEEecccccCCCcc-HHHHHhccC-CCCEEEEe
Confidence            888888776 7887 566677543221        12344555  6666666543 34566 455555665 89999999


Q ss_pred             CCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccc-cCCCCC--cccEEEeccCccc--CCCCceEEEeeC
Q 010008          250 ASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VADPFK--YCDVVTTTTHKSL--RGPRGGMIFFKK  319 (520)
Q Consensus       250 ~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~~p~~--~aDiv~~S~hK~l--~GprgG~I~~~~  319 (520)
                      +|+||+  ..+   +++|.++|+++|+++|+|++ |.++...+. ....+.  ...+++.|+||++  +|.|.||+++++
T Consensus       150 ~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~-y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~  228 (356)
T PRK08056        150 TPNNPTGLLPERQLLQAIAERCKSLNIALILDEA-FIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSD  228 (356)
T ss_pred             CCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecc-hhccCCcchHHHHHhccCCCEEEEEechhhccCcchhheeeecCC
Confidence            999997  566   77888999999999999998 445443221 111122  2458889999986  788999999864


Q ss_pred             CCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCCee
Q 010008          320 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF-KVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHL  397 (520)
Q Consensus       320 ~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~-~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~~  397 (520)
                      +     ++.+.+.....+.   +.+.....+...++   ....+ ++..+++.++++.+.+.|++. |+.+..+  .+.+
T Consensus       229 ~-----~~~~~l~~~~~~~---~~~~~~~~~a~~~l---~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~--~~~~  295 (356)
T PRK08056        229 D-----AAVARMRRQQMPW---SINAFAALAGEVIL---QDRAYQQATWQWLAEEGARFYQALCALPLLTVWPG--RANY  295 (356)
T ss_pred             H-----HHHHHHHHhCCCC---chhHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCC--CCcE
Confidence            2     4555554432221   11111211111122   22333 555677888899999999774 7776543  3466


Q ss_pred             EEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          398 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       398 ~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +|+++..   +..++.+.|.+.||.+..    |+. ....+++|||++.       ++++++.+.+.|+++++
T Consensus       296 ~~~~~~~---~~~~~~~~l~~~gI~v~~----~~~f~~~~~~~iRis~~-------~~~~~~~l~~~l~~~~~  354 (356)
T PRK08056        296 LFLRCER---PDIDLQRALLTQRILIRS----CANYPGLDSRYYRVAIR-------SAAENERLLAALRNVLT  354 (356)
T ss_pred             EEEEcCC---ChHHHHHHHHHCCeEEEE----CCCCCCCCCCEEEEEEc-------CHHHHHHHHHHHHHHHc
Confidence            7777642   356677778789999954    332 1223568999864       36899999999987654

>PRK03321 putative aminotransferase; Provisional

Probab=99.90  E-value=6.4e-22  Score=204.50  Aligned_cols=313  Identities=17%  Similarity=0.135  Sum_probs=213.5

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      +.|+|..+++.  +++.+++++...+.. + ..||.       ...+.++    +.+++++|++++    +|.+++|+ +
T Consensus        23 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~-~~y~~-------~g~~~lr----~~ia~~~~~~~~----~I~~~~G~~~   85 (352)
T PRK03321         23 GAIKLSSNETPFGPLPSVRAAIARAAAG-V-NRYPD-------MGAVELR----AALAEHLGVPPE----HVAVGCGSVA   85 (352)
T ss_pred             cceeccCCCCCCCCCHHHHHHHHHHHHh-c-CcCCC-------CcHHHHH----HHHHHHhCcCHH----HEEECCCHHH
Confidence            45788877763  567899999877642 1 23432       1133444    667788898875    56678998 6


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  250 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~  250 (520)
                      ++..++.++++|||+|+++.|.+..+.        ......|.  +++.+++++ ++.+|++++++.+++ ++|+++++.
T Consensus        86 ~l~~~~~~~~~~gd~Vli~~p~y~~~~--------~~~~~~g~--~~~~v~~~~-~~~~~~~~l~~~~~~-~~~~v~l~~  153 (352)
T PRK03321         86 LCQQLVQATAGPGDEVIFAWRSFEAYP--------ILVQVAGA--TPVQVPLTP-DHTHDLDAMAAAITD-RTRLIFVCN  153 (352)
T ss_pred             HHHHHHHHhcCCCCEEEeCCCCHHHHH--------HHHHHcCC--EEEEccCCC-CCCCCHHHHHHhhcc-CCCEEEEeC
Confidence            777788888999999999988654321        11233454  666777763 478999999999977 899999988


Q ss_pred             CCCCC--CCCHHHHHHHHHH--hCCEEEEechhhcccccccccCCCCC----ccc-EEEeccCccc--CCCCceEEEeeC
Q 010008          251 SAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK----YCD-VVTTTTHKSL--RGPRGGMIFFKK  319 (520)
Q Consensus       251 s~~p~--~~d~~~i~~ia~~--~g~~li~D~Ah~~gli~~~~~~~p~~----~aD-iv~~S~hK~l--~GprgG~I~~~~  319 (520)
                      ++||+  ..+.+++.++|+.  +|+++++|+++ .++...+..+.++.    ..+ +++.|++|.+  +|.|.||+++++
T Consensus       154 p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~  232 (352)
T PRK03321        154 PNNPTGTVVTPAELARFLDAVPADVLVVLDEAY-VEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHP  232 (352)
T ss_pred             CCCCcCCCcCHHHHHHHHHhCCCCeEEEEechH-HHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCH
Confidence            89887  7899999999987  59999999995 34444332222221    123 6778999987  588999999987


Q ss_pred             CCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEE
Q 010008          320 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVL  399 (520)
Q Consensus       320 ~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~  399 (520)
                            ++.+.+.+...+  .+.+...+.++. .++..  ...+.+..+++.++++.+.+.|.+.|+.+..+  ...++|
T Consensus       233 ------~~~~~~~~~~~~--~~~s~~~q~~a~-~~l~~--~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~--~g~~i~  299 (352)
T PRK03321        233 ------EVIAALRKVAVP--FSVNSLAQAAAI-ASLAA--EDELLERVDAVVAERDRVRAALRAAGWTVPPS--QANFVW  299 (352)
T ss_pred             ------HHHHHHHHhcCC--CCCCHHHHHHHH-HHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCccCCC--CCCEEE
Confidence                  677776654322  222223233332 24432  23445556667777788889998888765433  245677


Q ss_pred             EEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          400 VDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       400 vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      +++.   .+..++.+.|.++||.+..    .     ...+|||++.       +.++++++.+++++++
T Consensus       300 i~l~---~~~~~~~~~l~~~gI~v~~----~-----~~~~iRi~~~-------~~~~~~~~~~al~~~~  349 (352)
T PRK03321        300 LPLG---ERTADFAAAAAEAGVVVRP----F-----AGEGVRVTIG-------APEENDAFLRAARAWR  349 (352)
T ss_pred             EeCC---CCHHHHHHHHHHCCEEEEc----c-----CCCcEEEeeC-------CHHHHHHHHHHHHHHh
Confidence            7763   2456788888999999942    2     2357999863       3799999999998764

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.90  E-value=7.3e-22  Score=211.22  Aligned_cols=342  Identities=15%  Similarity=0.162  Sum_probs=210.4

Q ss_pred             ccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCceeeecCChH
Q 010008           94 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGS  169 (520)
Q Consensus        94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~sGs  169 (520)
                      +.|+|..++.  .+++.|.++......+.    ||.   ..|.  ....|.++..++.+.++..  +.. ..+|.+|+|+
T Consensus       101 ~~i~l~~g~p~~~~~~~v~e~~~~~~~~~----Y~~---~~g~--~~lreaia~~~~~~~~~~~~~~~~-~~~I~vT~Ga  170 (527)
T PRK09275        101 DAVSYVRDQLGFDADEFVYELVDGIIGDN----YPV---PDRM--LKHTEKIVKDYLRQEMCGGRPPKG-EFDLFAVEGG  170 (527)
T ss_pred             HHHhhcCCCCCCCCCHHHHHHHHHHhcCC----CCC---CCCC--HHHHHHHHHHHHHhhccCCCCCCC-cCeEEEeCCH
Confidence            5578877763  35777888655443322    432   1122  2334445544555544332  210 0267778888


Q ss_pred             -HHHHHHHHh-----hCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcC
Q 010008          170 -PANFEVYTA-----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFR  242 (520)
Q Consensus       170 -~A~~~~l~a-----ll~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~  242 (520)
                       +|+..++.+     +++|||+|++++|.|..+..        .+.+.|...++++++.+++ ++.+|.+++++++++ +
T Consensus       171 ~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~--------~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~-~  241 (527)
T PRK09275        171 TAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLE--------IPELPRYDLEVVHINADEENEWQYPDSELEKLRDP-S  241 (527)
T ss_pred             HHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHH--------HHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCC-C
Confidence             888888876     68999999999997754421        2334454557777776544 478999999998887 8


Q ss_pred             CcEEEEcCCCCCC--CCC---HHHHHHHHHH--hCCEEEEechhhcccccccccCCCCC---cccEEEeccCccc--CCC
Q 010008          243 PKLIIAGASAYPR--DFD---YPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK---YCDVVTTTTHKSL--RGP  310 (520)
Q Consensus       243 pklIi~~~s~~p~--~~d---~~~i~~ia~~--~g~~li~D~Ah~~gli~~~~~~~p~~---~aDiv~~S~hK~l--~Gp  310 (520)
                      +|+|++++|+||+  ..+   +++|.++|++  ++++||+|+++ ..+..  .+.+.+.   .--|++.|++|++  +||
T Consensus       242 tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY-~~f~~--~~~s~~~~~~~~~I~v~SfSK~f~mtG~  318 (527)
T PRK09275        242 IKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVY-GTFVD--DFRSLFAVLPYNTILVYSFSKYFGATGW  318 (527)
T ss_pred             CCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCC-hhhcc--cccCHHHhCCCCEEEEeehhhhccCcHh
Confidence            9999999999997  555   6778888865  49999999984 34432  1122111   2238889999986  899


Q ss_pred             CceEEEeeCCCcchhhHHHhh--------------------------------cccCCCCCCCCChHHHHH-H---HHHH
Q 010008          311 RGGMIFFKKDPVLGVELESAI--------------------------------NNAVFPGLQGGPHNHTIG-G---LAVC  354 (520)
Q Consensus       311 rgG~I~~~~~~~~~~~l~~~i--------------------------------~~~~~p~~~g~p~~~~ia-a---la~a  354 (520)
                      |.||++++++.. ..++.+.+                                .........|.+...+++ +   +..+
T Consensus       319 RlG~i~~~~~~v-~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~al  397 (527)
T PRK09275        319 RLGVIALHEDNV-FDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFAL  397 (527)
T ss_pred             HHhhhhcCchhH-HHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Confidence            999999987410 00011111                                010011112333334443 3   2222


Q ss_pred             HHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEec-CCCCCeeEEEEecCCC---------------CCH-HHHHHHHh
Q 010008          355 LKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVS-GGSDNHLVLVDLRPMG---------------IDG-ARVEKILD  417 (520)
Q Consensus       355 l~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~-~gt~~~~~~vd~~~~g---------------~~~-~~~~~~L~  417 (520)
                      ++. .....++..+.+.++++.+.+.|   |+.+.. +....+++++|+...+               .+. +.+.++++
T Consensus       398 l~~-~~~~~~~~~~~~~~Rr~~l~~~L---g~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~  473 (527)
T PRK09275        398 LDE-EDAYKKAMKDIIRRRYKALYEGL---GLPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAE  473 (527)
T ss_pred             HhC-chHHHHHHHHHHHHHHHHHHHHc---CCCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHh
Confidence            332 11223566777777778777776   443321 2223577788875321               133 34667888


Q ss_pred             hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          418 MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       418 ~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      +.||.+    +||......++++||+...     .+++++.++.+.|.+++...
T Consensus       474 e~gV~v----~PG~~Fg~~~~~vRis~a~-----~~~~~~~~~~~rl~~~l~~y  518 (527)
T PRK09275        474 ETGVVL----LPGGGFGGPEWSVRVSLAN-----LNEEDYAKIGKAIRKLLDEY  518 (527)
T ss_pred             cCCEEE----eCchhhCCCCCeEEEEEec-----CCHHHHHHHHHHHHHHHHHH
Confidence            999999    6776511135789999743     34789999999999888755

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.90  E-value=4.4e-22  Score=206.59  Aligned_cols=315  Identities=18%  Similarity=0.177  Sum_probs=204.6

Q ss_pred             HHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-CCCCCE
Q 010008          107 RAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPHDR  185 (520)
Q Consensus       107 ~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al-l~pGD~  185 (520)
                      .+.++++...+.+.+..        ...+.++++|    +.++++||..+     -|.++||+.|+++++.++ ++|||+
T Consensus         5 ~e~~~~v~~~l~s~~~~--------~~g~~~~~fE----~~~a~~~g~~~-----~~~~~sgt~Al~~al~~l~~~~gde   67 (363)
T PF01041_consen    5 EEEIDAVLEVLRSGWLS--------TYGPYVEEFE----KEFAEYFGVKY-----AVAVSSGTSALHLALRALGLGPGDE   67 (363)
T ss_dssp             HHHHHHHHHHHHHTCCS--------SSSHHHHHHH----HHHHHHHTSSE-----EEEESSHHHHHHHHHHHTTGGTTSE
T ss_pred             HHHHHHHHHHHHhCCcc--------CCCHHHHHHH----HHHHHHhCCCe-----EEEeCChhHHHHHHHHhcCCCcCce
Confidence            44556666666655311        1135688888    67899999886     366799999999999998 899999


Q ss_pred             EEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHH
Q 010008          186 IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQI  265 (520)
Q Consensus       186 Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~i  265 (520)
                      |+++..++.+..        ..+...|.  +++++++|++++.+|++.+++++++ ++|+|++. +.++...|+++|.++
T Consensus        68 Vi~p~~t~~~~~--------~ai~~~G~--~pv~~Di~~~~~~id~~~~~~~i~~-~t~ai~~~-h~~G~~~d~~~i~~~  135 (363)
T PF01041_consen   68 VIVPAYTFPATA--------SAILWAGA--EPVFVDIDPETLNIDPEALEKAITP-KTKAILVV-HLFGNPADMDAIRAI  135 (363)
T ss_dssp             EEEESSS-THHH--------HHHHHTT---EEEEE-BETTTSSB-HHHHHHHHHT-TEEEEEEE--GGGB---HHHHHHH
T ss_pred             EecCCCcchHHH--------HHHHHhcc--EEEEEeccCCcCCcCHHHHHHHhcc-CccEEEEe-cCCCCcccHHHHHHH
Confidence            999987664432        24555665  8999999999999999999999998 89998874 334446699999999


Q ss_pred             HHHhCCEEEEechhhcccccccccCCCCCcccEEEeccC--cccCCCCceEEEeeCCCcchhhHHHhhcccCCCCC----
Q 010008          266 ADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGL----  339 (520)
Q Consensus       266 a~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~h--K~l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~----  339 (520)
                      |+++|++||.|+||+.|....+.....  ..|+.++|+|  |.+....||+|+++++     ++.+++......+.    
T Consensus       136 ~~~~~i~lIeD~a~a~g~~~~g~~~G~--~gd~~~fSf~~~K~i~~geGG~v~~~~~-----~~~~~~~~~~~~g~~~~~  208 (363)
T PF01041_consen  136 ARKHGIPLIEDAAQAFGARYKGRPVGS--FGDIAIFSFHPTKIITTGEGGAVVTNDP-----ELAERARALRNHGRSRDA  208 (363)
T ss_dssp             HHHTT-EEEEE-TTTTT-EETTEETTS--SSSEEEEESSTTSSS-SSS-EEEEESTH-----HHHHHHHHHTBTTEETSE
T ss_pred             HHHcCCcEEEccccccCceeCCEeccC--CCCceEecCCCCCCCcCCCCeeEEecHH-----HHHHHhhhhhccCcCccc
Confidence            999999999999999997765533222  4799999987  8898889999999986     66665543221111    


Q ss_pred             ---------CC-CChHH-HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecC--CCC--C-eeEEEEe
Q 010008          340 ---------QG-GPHNH-TIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSG--GSD--N-HLVLVDL  402 (520)
Q Consensus       340 ---------~g-~p~~~-~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~--gt~--~-~~~~vd~  402 (520)
                               .| ...++ ..||+  ++.++  ..+++..++.+++++.+.+.|.+ .++.....  +..  + +.+.+-+
T Consensus       209 ~~~~~~~~~~g~n~rm~~~~AAi--gl~QL--~~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~  284 (363)
T PF01041_consen  209 FRRYRHELPPGYNFRMSELQAAI--GLAQL--KRLDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRL  284 (363)
T ss_dssp             CSTTEESSSS--B-B-BHHHHHH--HHHHH--HTHHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEE
T ss_pred             cccccccccCCcccccHHHHHHH--HHHHH--HHhhhhHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccc
Confidence                     01 01112 22332  23333  34567778888889999999987 45544432  211  1 2223333


Q ss_pred             cCC-CCCHHHHHHHHhhcCeEEcCCC-CCCCC-CCCC-----------------CCEEEEccCCccccCCCHHHHHHHHH
Q 010008          403 RPM-GIDGARVEKILDMASITLNKNS-VPGDK-SALV-----------------PGGIRIGSPAMTTRGFSEKEFVAIAD  462 (520)
Q Consensus       403 ~~~-g~~~~~~~~~L~~~gI~v~~~~-~Pg~~-~~~~-----------------~~giRig~~~~tt~g~~~~d~~~la~  462 (520)
                      ... ..+.+.+.+.|.+.||.+...+ .|.+. +.+.                 ...|.+.+.    ..++++|++++++
T Consensus       285 ~~~~~~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~----~~lt~edv~~I~~  360 (363)
T PF01041_consen  285 PDEALADRDELVEALRARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIH----PRLTEEDVDYIAE  360 (363)
T ss_dssp             TCCGCSTHHHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHS----TTSCHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHCCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCC----CCCCHHHHHHHhh
Confidence            322 1357889999999999998765 23321 1110                 112444332    2578999999999


Q ss_pred             HHH
Q 010008          463 FIH  465 (520)
Q Consensus       463 ~i~  465 (520)
                      .|+
T Consensus       361 ~ir  363 (363)
T PF01041_consen  361 AIR  363 (363)
T ss_dssp             HHH
T ss_pred             ccC
Confidence            874

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PLN02231 alanine transaminase

Probab=99.90  E-value=2.1e-21  Score=209.88  Aligned_cols=340  Identities=15%  Similarity=0.125  Sum_probs=212.1

Q ss_pred             ccceEecCCCCChHHHHHHHhhhhhccC---CCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-
Q 010008           94 KSLELIASENFTSRAVMEAVGSCLTNKY---SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-  169 (520)
Q Consensus        94 ~~i~Liasen~~~~~V~ea~~s~l~~~y---~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-  169 (520)
                      +.|+|-.++...|..+++.....+.+..   ..+|      +......++.+...+++.+..|.+.+ . -+|.+|+|+ 
T Consensus       130 ~~i~~~~~~~~fp~~~i~~a~~~l~~~~~~~~~~Y------~~s~G~~~lReaIA~~~~~r~g~~~~-p-e~I~iT~Ga~  201 (534)
T PLN02231        130 SLLDKSETHGLFSADAIERAWQILDQIPGRATGAY------SHSQGIKGLRDAIAAGIEARDGFPAD-P-NDIFLTDGAS  201 (534)
T ss_pred             ccCCCCCccccCCHHHHHHHHHHHHhcCCccccCc------CCCCCcHHHHHHHHHHHHhccCCCCC-c-ccEEEeCCHH
Confidence            3466655555566677776666665422   1123      33333456666666788777775422 1 267779998 


Q ss_pred             HHHHHHHHhhC-CCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhc-----C
Q 010008          170 PANFEVYTAIL-KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILF-----R  242 (520)
Q Consensus       170 ~A~~~~l~all-~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~-----~  242 (520)
                      +|+..++.+++ .|||.|++++|.|.++..        .+...|.  ++++|+++++ ++.+|+++|++.++..     +
T Consensus       202 ~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~--------~~~~~g~--~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~  271 (534)
T PLN02231        202 PAVHMMMQLLIRSEKDGILCPIPQYPLYSA--------SIALHGG--TLVPYYLDEATGWGLEISELKKQLEDARSKGIT  271 (534)
T ss_pred             HHHHHHHHHhccCCCCEEEEeCCCChhHHH--------HHHHcCC--EEEEEecCcccCCCCCHHHHHHHHHHHhhcCCC
Confidence            89999999998 489999999998765431        2344555  6777778754 4689999999988652     6


Q ss_pred             CcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccc-cccCCCCC---------ccc---EEEeccC
Q 010008          243 PKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAA-SVVADPFK---------YCD---VVTTTTH  304 (520)
Q Consensus       243 pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~-~~~~~p~~---------~aD---iv~~S~h  304 (520)
                      +|+|++..|+||+  .+   .+++|.++|+++|++||+|++ |..+++. +....++.         .-|   +++.|++
T Consensus       272 ~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEv-Y~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~S  350 (534)
T PLN02231        272 VRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEV-YQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVS  350 (534)
T ss_pred             eEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcc-chhcccCCCCCcccHHHHHhhhccccCCceEEEEeccC
Confidence            8998888999997  44   467888999999999999998 4555553 21111110         112   5567999


Q ss_pred             ccc---CCCCceEEEee--CCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHh--cCchhHH-------HHHHH
Q 010008          305 KSL---RGPRGGMIFFK--KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA--QSPEFKV-------YQNKV  370 (520)
Q Consensus       305 K~l---~GprgG~I~~~--~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~--~~~~~~~-------~~~~i  370 (520)
                      |.+   +|+|+||+++.  ++     ++.+.+.+..... .+++...++++ ..+++.-  .+..|+.       ..+.+
T Consensus       351 K~~~g~pGlRiGy~~~~~~~~-----~l~~~l~k~~~~~-~~s~~~~Q~~~-~~~l~~p~~~~~~y~~~~~~~~~i~~~~  423 (534)
T PLN02231        351 KGYYGECGKRGGYMEVTGFTS-----DVREQIYKVASVN-LCSNISGQILA-SLVMSPPKPGDESYESYMAEKDGILSSL  423 (534)
T ss_pred             cccccCCccceEEEEEecCCH-----HHHHHHHHHHhhh-cCCChHHHHHH-HHHhCCCCCCcchHHHHHHHHHHHHHHH
Confidence            964   69999999863  22     5666554332211 23333333322 2233210  0122322       34678


Q ss_pred             HHHHHHHHHHHHHC-CCEEecCCCCCeeEEEEecC-C-CC---------CHHH-HHHHHhhcCeEEcCCCCCCCC-CC-C
Q 010008          371 VSNCRALASRLVEL-GYKLVSGGSDNHLVLVDLRP-M-GI---------DGAR-VEKILDMASITLNKNSVPGDK-SA-L  435 (520)
Q Consensus       371 ~~na~~l~~~L~~~-G~~v~~~gt~~~~~~vd~~~-~-g~---------~~~~-~~~~L~~~gI~v~~~~~Pg~~-~~-~  435 (520)
                      .++++.+.+.|++. |+.+..+ ..+.++|+++.. . .+         +... +..+|++.||.+    +||.. +. .
T Consensus       424 ~~r~~~l~~~L~~~~gi~~~~p-~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~v----vPGs~Fg~~~  498 (534)
T PLN02231        424 ARRAKTLEDALNSLEGVTCNKA-EGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVV----VPGSGFGQVP  498 (534)
T ss_pred             HHHHHHHHHHHhcCCCceecCC-CeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEE----eCCcccCCCC
Confidence            88889999999885 8887654 235666645531 1 11         1122 355778899999    66654 21 1


Q ss_pred             CCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          436 VPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       436 ~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +..++|++..      .+++++++..+.|.+.++.
T Consensus       499 g~~~~Rit~~------~~~e~l~eal~RL~~~~~~  527 (534)
T PLN02231        499 GTWHFRCTIL------PQEDKIPAIVSRLTEFHKS  527 (534)
T ss_pred             CCCeEEEEeC------CCHHHHHHHHHHHHHHHHH
Confidence            2346999752      2468888888887776553

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.90  E-value=4.1e-21  Score=199.47  Aligned_cols=314  Identities=17%  Similarity=0.211  Sum_probs=215.3

Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccc
Q 010008          129 RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRV  208 (520)
Q Consensus       129 ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v  208 (520)
                      .-|+|.+.+.++|    +.+++++|.++     -|.++||+.|+++++...++|||+|  +...+   +...    ...+
T Consensus        72 d~Yagd~s~~~LE----~~vAe~lG~e~-----aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~---f~Tt----~ahI  133 (460)
T PRK13237         72 EAYAGSRNFYHLE----ETVQEYYGFKH-----VVPTHQGRGAENLLSRIAIKPGQYV--PGNMY---FTTT----RYHQ  133 (460)
T ss_pred             hhhcCCCcHHHHH----HHHHHHHCCCe-----EEEeCCHHHHHHHHHHhCCCCcCEE--CCccc---hHhh----HHHH
Confidence            3467777788898    57888999987     3667899999998766668999976  33222   1111    0113


Q ss_pred             ccccceEEEEEcc---------cCCCCCCCCHHHHHHHhhhcC---CcEEEEc--CCCCC-CC---CCHHHHHHHHHHhC
Q 010008          209 SGTSIYFESMPYR---------LDESTGLVDYDMLEKTAILFR---PKLIIAG--ASAYP-RD---FDYPRMRQIADAVG  270 (520)
Q Consensus       209 ~~~g~~~~~v~~~---------~d~~~~~iD~d~le~~i~~~~---pklIi~~--~s~~p-~~---~d~~~i~~ia~~~g  270 (520)
                      ...|.  .++.+.         .++.++.+|+++|++++++..   +++|.+.  .+.++ ..   .+++++.++|+++|
T Consensus       134 ~~~Ga--~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~G  211 (460)
T PRK13237        134 ELNGG--IFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHG  211 (460)
T ss_pred             HhCCc--EEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcC
Confidence            33444  222221         124578999999999998632   2233322  22222 23   37899999999999


Q ss_pred             CEEEEechhhcc---ccc---ccccCCC--------CCcccEEEeccCcccCCCCceEEEeeCCCcchhhHHHhhccc--
Q 010008          271 ALLMMDMAHISG---LVA---ASVVADP--------FKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNA--  334 (520)
Q Consensus       271 ~~li~D~Ah~~g---li~---~~~~~~p--------~~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i~~~--  334 (520)
                      +.|+.|+||..|   ++.   .+....+        +.++|.+++|+||.+.++-||+|+++++     ++.++++..  
T Consensus       212 l~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~GG~i~t~D~-----eL~~~~r~~~~  286 (460)
T PRK13237        212 IKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIGGFLAMNDE-----ELFDEAKELVV  286 (460)
T ss_pred             CEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCceEEEECCH-----HHHHHHHHhcc
Confidence            999999999988   441   1222222        3479999999999999999999999996     788887765  


Q ss_pred             CCCCC--CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCC-------
Q 010008          335 VFPGL--QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM-------  405 (520)
Q Consensus       335 ~~p~~--~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~-------  405 (520)
                      .++|+  .|+.....++|+|++|.+...   .+|.++..++.++|.+.|.+.|++++.+ +..|-+++|....       
T Consensus       287 ~~eG~~tygg~~grd~~alAvgl~E~~~---~~y~~~ri~~~~~l~~~L~~~Gvpv~~p-~ggH~v~vda~~~lph~~~~  362 (460)
T PRK13237        287 VYEGMPSYGGMAGRDMEAMAIGIEESVQ---YEYIEHRVGQVRYLGEKLLAAGVPIVEP-VGGHAVFLDARRFLPHLPQD  362 (460)
T ss_pred             ccCCCcCCCChhhhHHHHHHhHHHhhch---HHHHHHHHHHHHHHHHHHHHCCCceecC-CCceEEEEEhHHhCCCCCcc
Confidence            45553  455445678899999998764   3788889999999999999999999975 4569888886432       


Q ss_pred             CCCHHH-HHHHHhhcCeEEc-CCCC-----CCCCCCCCC--CEEEEccCCccccCCCHHHHHHHHHHHHHHHHHHHHH
Q 010008          406 GIDGAR-VEKILDMASITLN-KNSV-----PGDKSALVP--GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEA  474 (520)
Q Consensus       406 g~~~~~-~~~~L~~~gI~v~-~~~~-----Pg~~~~~~~--~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~~~~  474 (520)
                      ...+.. +..+..+.||... .+++     |.......+  .-+|+..|   +|-.|.+.|+.+++.+..+.++...+
T Consensus       363 ~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaip---rr~yt~~h~~~v~~~~~~~~~~~~~~  437 (460)
T PRK13237        363 QFPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIP---RRVYTYAHMDVVADSVIKLYKHREDI  437 (460)
T ss_pred             cChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccc---cccccHHHHHHHHHHHHHHHHhHhhc
Confidence            122333 3444567888642 2221     211111111  45899755   56789999999999999999877544

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.90  E-value=3.3e-21  Score=218.29  Aligned_cols=352  Identities=18%  Similarity=0.166  Sum_probs=229.9

Q ss_pred             ccceEec-CCCCChH-HHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIA-SENFTSR-AVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Lia-sen~~~~-~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      +.+.|.. +..+.++ .|.+++...+.+.|  +.|+..+..+....+.+| .++++++++||++++++  .|..|+|+ +
T Consensus        34 ~~iYLD~Aatt~~~~~~V~~~~~~~~~~~~--~np~s~~~~s~~~~~~~e-~aR~~ia~~lga~~~~~--~VvFtsnaT~  108 (805)
T PLN02724         34 GVVYLDHAGATLYSESQLEAALADFSSNVY--GNPHSQSDSSMRSSDTIE-SARQQVLEYFNAPPSDY--ACVFTSGATA  108 (805)
T ss_pred             CCEeEeCCCCCCCCHHHHHHHHHHHHhhcc--CCCCcCcchhhhHHHHHH-HHHHHHHHHhCCCccce--EEEEeCChHH
Confidence            4577764 4456555 55555555554443  445433444444455565 68899999999987543  34456655 8


Q ss_pred             HHHHHHHhh-CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC-------CCCCCCH--HHHHHHhh-
Q 010008          171 ANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-------STGLVDY--DMLEKTAI-  239 (520)
Q Consensus       171 A~~~~l~al-l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-------~~~~iD~--d~le~~i~-  239 (520)
                      |+..+..++ +++||+|++...+|.+.+. ...    .....|.  ++..++++.       +.+.+|.  +++++.++ 
T Consensus       109 alnlva~~l~~~~gd~Iv~t~~eH~svl~-~~~----~a~~~G~--~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~  181 (805)
T PLN02724        109 ALKLVGETFPWSSESHFCYTLENHNSVLG-IRE----YALEKGA--AAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTS  181 (805)
T ss_pred             HHHHHHHHCCCCCCCeEEEeeccccchHH-HHH----HHHHcCC--eEEeccchhccccccccccccccchhhhhhhhhh
Confidence            999888888 8899999998888876542 111    1112344  444444431       1234443  66766542 


Q ss_pred             --------hcCCcEEEEcC-CCC-CCCCCHHHHHHHHHHh--------CCEEEEechhhcccccccccCCCCCcccEEEe
Q 010008          240 --------LFRPKLIIAGA-SAY-PRDFDYPRMRQIADAV--------GALLMMDMAHISGLVAASVVADPFKYCDVVTT  301 (520)
Q Consensus       240 --------~~~pklIi~~~-s~~-p~~~d~~~i~~ia~~~--------g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~  301 (520)
                              ..++++|++.+ +|. +...|++.+.++++..        ++++++|+||++|.+..++...   ++|++++
T Consensus       182 ~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv~~~---~~Dfl~~  258 (805)
T PLN02724        182 KLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDLSRY---PADFVVV  258 (805)
T ss_pred             hhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCChhhc---CCCEEEE
Confidence                    12568888874 333 3488999876655543        3689999999999876554332   5899999


Q ss_pred             ccCcccCCCCc-eEEEeeCCCcchhhHHHhhcccCCC-----------------------CCCCCChHHHHHHHHHHHHH
Q 010008          302 TTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFP-----------------------GLQGGPHNHTIGGLAVCLKH  357 (520)
Q Consensus       302 S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~~~~~p-----------------------~~~g~p~~~~iaala~al~~  357 (520)
                      |+|||++||.| |+++++++      +.+.+....+.                       .-.|++++..+++++.|++.
T Consensus       259 S~HK~~GgP~G~G~L~vr~~------~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~  332 (805)
T PLN02724        259 SFYKIFGYPTGLGALLVRRD------AAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKL  332 (805)
T ss_pred             ecceeccCCCCceEEEEehh------hhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHH
Confidence            99999988998 99999883      33333221111                       12578999999999999998


Q ss_pred             hcCchhHHHHHHHHHHHHHHHHHHHHC-------CCEEecCC-------CCCeeEEEEecCC---CCCHHHHHHHHhhcC
Q 010008          358 AQSPEFKVYQNKVVSNCRALASRLVEL-------GYKLVSGG-------SDNHLVLVDLRPM---GIDGARVEKILDMAS  420 (520)
Q Consensus       358 ~~~~~~~~~~~~i~~na~~l~~~L~~~-------G~~v~~~g-------t~~~~~~vd~~~~---g~~~~~~~~~L~~~g  420 (520)
                      +...+.+...++....++++.+.|.+.       +++++.+.       ....++.+.+...   .+...++..++.+.|
T Consensus       333 l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~g  412 (805)
T PLN02724        333 LNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSG  412 (805)
T ss_pred             HHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcC
Confidence            876677777888888899999999874       36666432       0123333343321   133456777788899


Q ss_pred             eEEcCCCC--CCCC-C---------------------------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          421 ITLNKNSV--PGDK-S---------------------------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       421 I~v~~~~~--Pg~~-~---------------------------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      |.++.+..  |+-. .                           ....+.+|+|+..++|    ++|+++++++|++....
T Consensus       413 I~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt----~eDvd~lv~~l~~~~~~  488 (805)
T PLN02724        413 IQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMST----FEDCQKFIDFIISSFVS  488 (805)
T ss_pred             cEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCC----HHHHHHHHHHHHHHhhc
Confidence            99986542  2200 0                           0113789999998887    89999999999997654

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.90  E-value=2e-21  Score=204.97  Aligned_cols=321  Identities=18%  Similarity=0.175  Sum_probs=207.8

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCC-CCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC--C
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRY-YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--K  181 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ry-y~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all--~  181 (520)
                      .+|.|++++...+. +|..|..+.|. |+-.+...++|    +++++++|.+.     .|..+||++||..++.++.  .
T Consensus        61 ~~p~v~~a~~~~~~-~~~~~~~~s~~~~~~~~~~~~Le----~~la~~~g~~~-----~i~~~sG~~a~~~~i~~l~~~~  130 (410)
T PRK13392         61 QHPDVIGAMVDALD-RYGAGAGGTRNISGTSHPHVLLE----RELADLHGKES-----ALLFTSGYVSNDAALSTLGKLL  130 (410)
T ss_pred             CCHHHHHHHHHHHH-HcCCCCchhhhcccChHHHHHHH----HHHHHHhCCCC-----EEEECcHHHHHHHHHHHHhcCC
Confidence            37899999987664 45444444443 33333344555    67889999743     4667999999998888775  4


Q ss_pred             CCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh---cCCcEEEEcCCCCCC--C
Q 010008          182 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLIIAGASAYPR--D  256 (520)
Q Consensus       182 pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~---~~pklIi~~~s~~p~--~  256 (520)
                      |||.|+...+.|++.+.        .+...|.  ++..++.      .|.+.+++.+..   .++++|++++++||+  .
T Consensus       131 ~g~~vi~~~~~h~s~~~--------~~~~~g~--~~~~~~~------~d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~  194 (410)
T PRK13392        131 PGCVILSDALNHASMIE--------GIRRSGA--EKQVFRH------NDLADLEEQLASVDPDRPKLIAFESVYSMDGDI  194 (410)
T ss_pred             CCCEEEEehhhhHHHHH--------HHHHcCC--eEEEEeC------CCHHHHHHHHHhccCCCCEEEEEeCCCCCCccc
Confidence            89988876655544321        2233454  3333221      145555555432   278999999888876  7


Q ss_pred             CCHHHHHHHHHHhCCEEEEechhhcccccc---ccc--CCCCCcccEEEeccCcccCCCCceEEEeeCCCcchhhHHHhh
Q 010008          257 FDYPRMRQIADAVGALLMMDMAHISGLVAA---SVV--ADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAI  331 (520)
Q Consensus       257 ~d~~~i~~ia~~~g~~li~D~Ah~~gli~~---~~~--~~p~~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i  331 (520)
                      .|+++|.++|+++|+++++|++|..|....   +..  ....+..|+++.|++|+++++ |||+++++      ++.+.+
T Consensus       195 ~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~-GG~~~~~~------~~~~~l  267 (410)
T PRK13392        195 APIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCL-GGYIAASA------DLIDFV  267 (410)
T ss_pred             ccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhcc-cchhhcCH------HHHHHH
Confidence            899999999999999999999998776421   111  111124689999999998654 68998876      566655


Q ss_pred             cccCCCCC-CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHH
Q 010008          332 NNAVFPGL-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGA  410 (520)
Q Consensus       332 ~~~~~p~~-~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~  410 (520)
                      .+...+.. ..+.+....++...+|+....  .....+++.++++++.+.|.+.|+++..+  +++++.+.+. ...+..
T Consensus       268 ~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~~~~i~~~-~~~~~~  342 (410)
T PRK13392        268 RSFAPGFIFTTALPPAVAAGATAAIRHLKT--SQTERDAHQDRVAALKAKLNANGIPVMPS--PSHIVPVMVG-DPTLCK  342 (410)
T ss_pred             HHhCcchhccCcCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCCCCCC--CCCEEEEEeC-CHHHHH
Confidence            43322211 222222344555557776533  23456778888999999999889887543  3445444442 111234


Q ss_pred             HHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          411 RVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       411 ~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ++.+.| ++.||.+.....|+.  +...++|||+.+...    +++|++++++.|.++++
T Consensus       343 ~~~~~L~~~~GI~v~~~~~p~~--~~~~~~lRis~~~~~----t~edid~l~~aL~~~~~  396 (410)
T PRK13392        343 AISDRLMSEHGIYIQPINYPTV--PRGTERLRITPTPLH----DDEDIDALVAALVAIWD  396 (410)
T ss_pred             HHHHHHHHhCCEEEeeeCCCCC--CCCCceEEEEECCCC----CHHHHHHHHHHHHHHHH
Confidence            566666 578999976433321  223468999987654    48999999999988865

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.90  E-value=2.8e-21  Score=200.68  Aligned_cols=336  Identities=14%  Similarity=0.099  Sum_probs=209.4

Q ss_pred             hhhccccChHHHHHHHHHHHH-hhccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHH
Q 010008           71 DYSLGEADPEVCEIITKEKER-QFKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKR  147 (520)
Q Consensus        71 ~~~l~~~d~~~~~~~~~e~~~-~~~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~  147 (520)
                      +.++....+..+..+...... ....++|..++.  +.++.+++++......   .+|+.   ..|   ..++++...++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~---~~Y~~---~~G---~~~lr~~ia~~   74 (364)
T PRK07865          4 SARLPDFPWDTLAPAKATAAAHPDGIVDLSVGTPVDPVPPVIQEALAAAADA---PGYPT---TAG---TPELREAIVGW   74 (364)
T ss_pred             cccCCCccHHHHHHHHHHHHhcCCCEEEcCCCCCCCCCCHHHHHHHHHHHhh---CCCCC---ccC---CHHHHHHHHHH
Confidence            345666666666555443322 235678876653  3467888888764421   13432   112   23555556678


Q ss_pred             HHHHcCCC---CCCCceeeecCChH-HHHHHHHHhh-CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEccc
Q 010008          148 ALAAFNLD---ENKWGVNVQPLSGS-PANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL  222 (520)
Q Consensus       148 ~~~lfg~~---~~~~~~~V~~~sGs-~A~~~~l~al-l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~  222 (520)
                      +.+.+|.+   ++    +|.+++|+ +++..++.++ ++|||+|++++|.|.++..        .+...|.  +++.++ 
T Consensus        75 l~~~~~~~~~~~~----~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~~~-  139 (364)
T PRK07865         75 LARRRGVTGLDPA----AVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEV--------GARLAGA--TVVRAD-  139 (364)
T ss_pred             HHHHcCCCCCCcc----cEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHH--------HHHhcCC--EEEecC-
Confidence            87777754   54    67789998 8888777787 7999999999998765421        2233454  554542 


Q ss_pred             CCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC---
Q 010008          223 DESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK---  294 (520)
Q Consensus       223 d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~---  294 (520)
                             ++++++.    .++|+|+++.++||+  .++   +++|.++|+++|++||+|+++. .+...+.....+.   
T Consensus       140 -------~~~~l~~----~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~  207 (364)
T PRK07865        140 -------SLTELGP----QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYL-ELGWDAEPVSILDPRV  207 (364)
T ss_pred             -------ChhhCCc----ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-hhccCCCCCccccccc
Confidence                   2233322    378999998899997  444   6678888999999999999954 4443321111111   


Q ss_pred             -----cccEEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHH
Q 010008          295 -----YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ  367 (520)
Q Consensus       295 -----~aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~  367 (520)
                           .-.+++.|++|.+  +|.|+||+++++      ++.+++.........+.+...+ +++..++..  ....++..
T Consensus       208 ~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~------~~~~~~~~~~~~~~~~~~~~~q-~~~~~~l~~--~~~~~~~~  278 (364)
T PRK07865        208 CGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDP------ALVAELLEVRKHAGMMVPAPVQ-AAMVAALGD--DAHVREQR  278 (364)
T ss_pred             cCCccceEEEEeechhccCCCceeeEEEecCH------HHHHHHHHHHHhcCCCcCHHHH-HHHHHHhCC--HHHHHHHH
Confidence                 1238889999986  799999999877      6666654432111122223322 222223322  12235566


Q ss_pred             HHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCC
Q 010008          368 NKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPA  446 (520)
Q Consensus       368 ~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~  446 (520)
                      +.+.++++.+.+.|++.|+.+..+ ..+.++|+.+.   .+..++.+.|.+.||.+.    ||+. ++..++++||++..
T Consensus       279 ~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~---~~~~~~~~~l~~~gv~v~----pg~~f~~~~~~~iRi~~~~  350 (364)
T PRK07865        279 ERYARRRAVLRPALEAAGFRVDHS-EAGLYLWATRG---EDCWDTVAWLAERGILVA----PGDFYGPAGAQHVRVALTA  350 (364)
T ss_pred             HHHHHHHHHHHHHHHHcCCcccCC-CccEEEEEeCC---CCHHHHHHHHHHCCEEEe----CccccCcCCCCEEEEEecC
Confidence            777888888999998888776543 23455666652   245667788889999994    4432 22235789998642


Q ss_pred             ccccCCCHHHHHHHHHHHH
Q 010008          447 MTTRGFSEKEFVAIADFIH  465 (520)
Q Consensus       447 ~tt~g~~~~d~~~la~~i~  465 (520)
                            +++++++.++.|.
T Consensus       351 ------~~~~~~~~~~~l~  363 (364)
T PRK07865        351 ------TDERIAAAVERLA  363 (364)
T ss_pred             ------CHHHHHHHHHHhh
Confidence                  3688888887763

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.90  E-value=3.2e-21  Score=203.38  Aligned_cols=328  Identities=14%  Similarity=0.123  Sum_probs=202.1

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhcc----CCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC--CCCCCCceeeec
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNK----YSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQP  165 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~----y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg--~~~~~~~~~V~~  165 (520)
                      +.++|..+++.  +++.+.+++...+...    ...+|+.   ..|   ...+.+...+++.+..|  ++++    +|.+
T Consensus        35 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G---~~~LR~aia~~~~~~~g~~~~~~----~I~i  104 (409)
T PRK07590         35 KIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYGP---EQG---YDFLREKIAENDYQARGCDISAD----EIFI  104 (409)
T ss_pred             ceEEecCcCCCCCCCHHHHHHHHHHHhcccccCCccCCCC---CCC---CHHHHHHHHHHHHHhcCCcCChh----hEEE
Confidence            56888888764  5788889888776542    1123321   112   23455445556655555  4554    6777


Q ss_pred             CChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccce---------EEEEEcccCCC-CCCCCHHHH
Q 010008          166 LSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY---------FESMPYRLDES-TGLVDYDML  234 (520)
Q Consensus       166 ~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~---------~~~v~~~~d~~-~~~iD~d~l  234 (520)
                      |+|+ +|+..+ ..+++|||+|++.+|.|.++..        .+...|..         .++++++++++ ++.+|.++ 
T Consensus       105 t~Ga~~al~~l-~~~~~~gd~V~v~~P~Y~~~~~--------~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~-  174 (409)
T PRK07590        105 SDGAKCDTGNI-LDIFGPDNTIAVTDPVYPVYVD--------TNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELPE-  174 (409)
T ss_pred             CCCHHHHHHHH-HHhcCCCCEEEEeCCCCcchHH--------HHHHcCCcccccccccccceeEeecccccCCcccCcc-
Confidence            9998 777764 5677999999999998865532        12223331         12667777643 24455321 


Q ss_pred             HHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCC---Cc-c--cEEEecc
Q 010008          235 EKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KY-C--DVVTTTT  303 (520)
Q Consensus       235 e~~i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~---~~-a--Div~~S~  303 (520)
                            .++|+|+++.|+||+  .++   +++|.++|+++|++||+|+++ ..+...+..+.++   +. .  -|++.|+
T Consensus       175 ------~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y-~~~~~~~~~~~~~~~~~~~~~~vi~~~Sf  247 (409)
T PRK07590        175 ------EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAY-EAFISDPSLPHSIYEIEGARECAIEFRSF  247 (409)
T ss_pred             ------cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccc-hhhccCCCCCcchhhCCCcccceEEEecC
Confidence                  389999998999997  444   567778899999999999984 4444433222222   22 1  2667899


Q ss_pred             Cccc--CCCCceEEEeeCCCcchhhHHHhh------------cccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHH
Q 010008          304 HKSL--RGPRGGMIFFKKDPVLGVELESAI------------NNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK  369 (520)
Q Consensus       304 hK~l--~GprgG~I~~~~~~~~~~~l~~~i------------~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~  369 (520)
                      +|++  +|.|.||+++++      ++.+.+            .........+.+...+. +++.++..-.....++..+.
T Consensus       248 SK~~~~pGlRiG~~i~~~------~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~-a~~~~l~~~~~~~~~~~~~~  320 (409)
T PRK07590        248 SKTAGFTGTRCAYTVVPK------ELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQR-AAEAVYSPEGKAQIKELIDY  320 (409)
T ss_pred             ccccCCcCceeEEEEcCH------HHhhhccccchhhhHHHHHHHHhhcccCcCHHHHH-HHHHHhcCCcHHHHHHHHHH
Confidence            9976  799999999987      454411            11111111122223333 33334432111233566778


Q ss_pred             HHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHH-HHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCc
Q 010008          370 VVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEK-ILDMASITLNKNSVPGDK-SALVPGGIRIGSPAM  447 (520)
Q Consensus       370 i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~-~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~  447 (520)
                      +.++++.+.+.|.+.|+.+..+ ..+.++|+++.. +++..++.. ++++.||.+.    ||.. +....+++||+..  
T Consensus       321 ~~~~r~~l~~~L~~~~~~~~~~-~g~~f~wi~~~~-~~~~~~~~~~l~~~~gv~v~----pg~~f~~~~~~~iRi~~~--  392 (409)
T PRK07590        321 YMENAKIIREGLESAGFEVYGG-VNAPYIWVKTPD-GMSSWDFFDKLLQEANVVGT----PGSGFGPSGEGYFRLSAF--  392 (409)
T ss_pred             HHHHHHHHHHHHHhcCCceecC-CcceEEEEECCC-CCCHHHHHHHHHHHCCEEEe----ChhHhCCCCCCEEEEEcc--
Confidence            8888999999999888776543 235677888753 455555544 5567899994    4443 2223568999842  


Q ss_pred             cccCCCHHHHHHHHHHHHHH
Q 010008          448 TTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       448 tt~g~~~~d~~~la~~i~~~  467 (520)
                          .+++++++..+.|.++
T Consensus       393 ----~~~~~l~~~l~rl~~~  408 (409)
T PRK07590        393 ----GSRENVLEAMERIKKA  408 (409)
T ss_pred             ----CCHHHHHHHHHHHHhh
Confidence                2368888888877654

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.89  E-value=4.8e-21  Score=201.57  Aligned_cols=327  Identities=21%  Similarity=0.235  Sum_probs=210.4

Q ss_pred             ecCCCCC----hHHHHHHHhhhhhccCCCCCCCCCCC-CcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHH
Q 010008           99 IASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYY-GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  173 (520)
Q Consensus        99 iasen~~----~~~V~ea~~s~l~~~y~~G~p~~ryy-~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~  173 (520)
                      ..|.+|.    +|.|++|+...+. +|..|..+.|.. +..+...++|    +.+++++|.+.     .+..+||++||.
T Consensus        50 ~~sn~ylgl~~~p~v~~a~~~~~~-~~~~~~~~s~~~~g~~~~~~~Le----~~la~~~g~~~-----~l~~~sG~~an~  119 (402)
T TIGR01821        50 WCSNDYLGMGQHPEVLQAMHETLD-KYGAGAGGTRNISGTNIPHVELE----AELADLHGKES-----ALVFTSGYVAND  119 (402)
T ss_pred             eEccCcCCCCCCHHHHHHHHHHHH-HcCCCCcchhhhhCCcHHHHHHH----HHHHHHhCCCe-----EEEECchHHHHH
Confidence            3466663    6899999988774 455555555533 3344445555    67889999653     466789999999


Q ss_pred             HHHHhhCC--CCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh---cCCcEEEE
Q 010008          174 EVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLIIA  248 (520)
Q Consensus       174 ~~l~all~--pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~---~~pklIi~  248 (520)
                      .++..+.+  +||.|+.....|+..+.        .+...|.  ....++      ..|+++++++++.   .++++|++
T Consensus       120 ~ai~~l~~~~~~~~v~~~~~~h~s~~~--------~~~~~g~--~~~~~~------~~d~~~l~~~l~~~~~~~~~~v~~  183 (402)
T TIGR01821       120 ATLATLAKIIPGCVIFSDELNHASMIE--------GIRHSGA--EKFIFR------HNDVAHLEKLLQSVDPNRPKIIAF  183 (402)
T ss_pred             HHHHHhhCCCCCCEEEEcchHhHHHHH--------HHHHcCC--eEEEEC------CCCHHHHHHHHHhccCCCCeEEEE
Confidence            99988765  78877766555533221        1222343  222322      2377888877763   25788988


Q ss_pred             cCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccc---cccC-CCC-CcccEEEeccCcccCCCCceEEEeeCCC
Q 010008          249 GASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAA---SVVA-DPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDP  321 (520)
Q Consensus       249 ~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~---~~~~-~p~-~~aDiv~~S~hK~l~GprgG~I~~~~~~  321 (520)
                      +++++++  ..|+++|+++|+++|++|++|++|..|....   +... ..+ ...|+++.|++|.+++ -|||+++++  
T Consensus       184 e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~-~GG~i~~~~--  260 (402)
T TIGR01821       184 ESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGV-VGGYIAASR--  260 (402)
T ss_pred             cCCCCCCCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhcc-CCceeecCH--
Confidence            8777664  7899999999999999999999998775421   1111 111 1368999999999854 568988887  


Q ss_pred             cchhhHHHhhcccCCCC-CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEE
Q 010008          322 VLGVELESAINNAVFPG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV  400 (520)
Q Consensus       322 ~~~~~l~~~i~~~~~p~-~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~v  400 (520)
                          ++.+.+.....+. ..++.+...+++...+++.+...  ....++..++++++.+.|++.|++++.+  .++++.+
T Consensus       261 ----~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~i~~i  332 (402)
T TIGR01821       261 ----KLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKES--QDLRRAHQENVKRLKNLLEALGIPVIPN--PSHIVPV  332 (402)
T ss_pred             ----HHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHHHHcCCCcCCC--CCCEEEE
Confidence                5666554321111 12223333444444577765432  4445566788999999999888887653  3445555


Q ss_pred             EecCCCCCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          401 DLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       401 d~~~~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      .+.. .....++.+.| ++.||.+.....|.-  +...+.|||+.+...    +++|++++.+.|+++++
T Consensus       333 ~~~~-~~~a~~~~~~L~~~~Gi~v~~~~~p~~--~~g~~~lRis~~~~~----t~edi~~~~~~l~~~~~  395 (402)
T TIGR01821       333 IIGD-AALCKKVSDLLLNKHGIYVQPINYPTV--PRGTERLRITPTPAH----TDKMIDDLVEALLLVWD  395 (402)
T ss_pred             EeCC-HHHHHHHHHHHHhcCCEEEEeECCCCC--CCCCceEEEEeCCCC----CHHHHHHHHHHHHHHHH
Confidence            4421 11234566665 567999975433321  223468999987654    58999999999998875

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK10534 L-threonine aldolase; Provisional

Probab=99.89  E-value=2.5e-21  Score=198.45  Aligned_cols=319  Identities=16%  Similarity=0.170  Sum_probs=202.6

Q ss_pred             ceEecCCCC-ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHH
Q 010008           96 LELIASENF-TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE  174 (520)
Q Consensus        96 i~Liasen~-~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~  174 (520)
                      |+|..++|+ +||.+++++.......       .+ |+..+...++|    +.+++++|+++.     +...+|++++..
T Consensus         2 ~~~~~~~~~~p~~~~~~a~~~~~~~~-------~~-Y~~~~~~~~L~----~~la~~~g~~~~-----~v~~~g~~a~~~   64 (333)
T PRK10534          2 IDLRSDTVTRPSRAMLEAMMAAPVGD-------DV-YGDDPTVNALQ----DYAAELSGKEAA-----LFLPTGTQANLV   64 (333)
T ss_pred             cccccccCCCCCHHHHHHHHhccCCC-------cc-cCCCHHHHHHH----HHHHHHhCCCeE-----EEeCchHHHHHH
Confidence            456666765 7899999986543321       12 32234455666    567889999863     334667789998


Q ss_pred             HHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc-----CCcEEEEc
Q 010008          175 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAG  249 (520)
Q Consensus       175 ~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~-----~pklIi~~  249 (520)
                      ++.++++|||+|+++.+.|...+..+      .....+ ..+.+.++++ +++.+|+++|++++++.     ++|+|+++
T Consensus        65 ~l~~~~~~gd~vi~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~  136 (333)
T PRK10534         65 ALLSHCERGEEYIVGQAAHNYLYEAG------GAAVLG-SIQPQPIDAA-ADGTLPLDKVAAKIKPDDIHFARTRLLSLE  136 (333)
T ss_pred             HHHHhcCCCCeeEEechhhhhHhcCC------chHHhc-CceEEeecCC-CCCCCCHHHHHHhhcccCcCcccceEEEEe
Confidence            88899999999998776553111100      011222 1255566665 46899999999988653     58899998


Q ss_pred             CCCCCCCCCHH---HHHHHHHHhCCEEEEechhhcccccc-cccCCCC-CcccEEEeccCcccCCCCceEEEeeCCCcch
Q 010008          250 ASAYPRDFDYP---RMRQIADAVGALLMMDMAHISGLVAA-SVVADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLG  324 (520)
Q Consensus       250 ~s~~p~~~d~~---~i~~ia~~~g~~li~D~Ah~~gli~~-~~~~~p~-~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~  324 (520)
                      +|+++...+.+   +|.++|+++|++|++|+||..+.... +.....+ .+.|.++.|+||.++.+.||++++++     
T Consensus       137 np~~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~~G~~~~~~~-----  211 (333)
T PRK10534        137 NTHNGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNR-----  211 (333)
T ss_pred             cCCCCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCcccceEEcCH-----
Confidence            88777766655   55678889999999999976432110 1111011 24576667899988766666788877     


Q ss_pred             hhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecC
Q 010008          325 VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRP  404 (520)
Q Consensus       325 ~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~  404 (520)
                       ++.+.+.....+. .++......+ .+.++..+.  +..++.++..++++++.+.|.+.|+++..+  ..+++++++..
T Consensus       212 -~~i~~~~~~~~~~-~~~~~~~~~~-~a~~~~~l~--~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~--~~nfv~~~~~~  284 (333)
T PRK10534        212 -DYIKRARRWRKMT-GGGMRQAGIL-AAAGLYALK--HNVARLQEDHDNAAWLAEQLREAGADVMRQ--DTNMLFVRVGE  284 (333)
T ss_pred             -HHHHHHHHHHHHh-CCchhhHHHH-HHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHhCCCccCCC--CceEEEEECCc
Confidence             6766665433321 1111111111 111222111  123445566677889999999999987654  35677877742


Q ss_pred             CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          405 MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       405 ~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                        .+..++.+.|.+.||.+.    |+       ..+|++...   | .++++++++.+.|++.+
T Consensus       285 --~~~~~~~~~l~~~gi~v~----~~-------~~~rl~~~~---r-~t~e~~~~~~~~l~~~~  331 (333)
T PRK10534        285 --EQAAALGEYMRERNVLIN----AS-------PIVRLVTHL---D-VSREQLAEVVAHWRAFL  331 (333)
T ss_pred             --hhHHHHHHHHHHcCeeec----CC-------ceEEEEEEe---C-CCHHHHHHHHHHHHHHh
Confidence              245678899999999994    32       157886532   2 46899999999998654

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.89  E-value=1.1e-20  Score=199.26  Aligned_cols=327  Identities=19%  Similarity=0.222  Sum_probs=209.3

Q ss_pred             ecCCCC----ChHHHHHHHhhhhhccCCCCCCCCCC-CCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHH
Q 010008           99 IASENF----TSRAVMEAVGSCLTNKYSEGLPGKRY-YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  173 (520)
Q Consensus        99 iasen~----~~~~V~ea~~s~l~~~y~~G~p~~ry-y~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~  173 (520)
                      ..|.||    .+|.|++++...+. +|..|..+.|. |+..+...++|    +.+++++|.+.     .+..+||++||.
T Consensus        51 ~~s~dylgl~~~p~v~~a~~~~~~-~~~~~~~~s~~~~g~~~~~~~l~----~~la~~~g~~~-----~~~~~sG~~an~  120 (407)
T PRK09064         51 WCSNDYLGMGQHPKVIEAMIEALD-RCGAGAGGTRNISGTNHYHVELE----RELADLHGKEA-----ALVFTSGYVSND  120 (407)
T ss_pred             EECCCCcCCCCCHHHHHHHHHHHH-HcCCCCCCcCcCccCHHHHHHHH----HHHHHHhCCCc-----EEEECcHHHHHH
Confidence            446655    37899999987764 45444444443 33355555565    67888888643     456689999999


Q ss_pred             HHHHhhCC--CCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh---cCCcEEEE
Q 010008          174 EVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLIIA  248 (520)
Q Consensus       174 ~~l~all~--pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~---~~pklIi~  248 (520)
                      .++..+..  +++.|+.....|.+.+ .       .+...+.  +...++      ..|+++++++++.   .++++|++
T Consensus       121 ~ai~~l~~~~~~~~i~~~~~~h~s~~-~-------~~~~~~~--~~~~~~------~~d~~~le~~l~~~~~~~~~~v~~  184 (407)
T PRK09064        121 ATLSTLAKLIPDCVIFSDELNHASMI-E-------GIRRSRC--EKHIFR------HNDVAHLEELLAAADPDRPKLIAF  184 (407)
T ss_pred             HHHHHHhCCCCCCEEEEeCcchHHHH-H-------HHHHcCC--cEEEEC------CCCHHHHHHHHHhccCCCCeEEEE
Confidence            88887754  7777766554443221 1       1122333  222322      2477888887763   26789988


Q ss_pred             cCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccc-c--ccC-CCC-CcccEEEeccCcccCCCCceEEEeeCCC
Q 010008          249 GASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAA-S--VVA-DPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDP  321 (520)
Q Consensus       249 ~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~-~--~~~-~p~-~~aDiv~~S~hK~l~GprgG~I~~~~~~  321 (520)
                      +++.+++  ..|+++|+++|+++|++|++|++|..|.... +  ... ..+ ...|++++|++|.+ |+.||++++++  
T Consensus       185 ~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~-g~~GG~~~~~~--  261 (407)
T PRK09064        185 ESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAF-GVMGGYIAGSA--  261 (407)
T ss_pred             eCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhh-hccCceEecCH--
Confidence            8766654  7799999999999999999999998775321 1  100 111 23589999999998 45679999887  


Q ss_pred             cchhhHHHhhcccCCCC--CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEE
Q 010008          322 VLGVELESAINNAVFPG--LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVL  399 (520)
Q Consensus       322 ~~~~~l~~~i~~~~~p~--~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~  399 (520)
                          ++.+.+.....+.  ..+.+ ....++...+++.+...  ....+++.++++++.+.|.+.|++++.+  ..+++.
T Consensus       262 ----~~~~~l~~~~~~~~~t~~~~-~~~~~aa~~al~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~iv~  332 (407)
T PRK09064        262 ----ALVDAVRSYAPGFIFTTSLP-PAIAAAALASIRHLKES--NEERERHQERAAKLKAALDAAGIPVMPN--ESHIVP  332 (407)
T ss_pred             ----HHHHHHHHhCccccccCcCC-HHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcCCCCCCC--CCCEEE
Confidence                5655554322221  22333 33334444567665432  3446778889999999999889887653  245555


Q ss_pred             EEecCCCCCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          400 VDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       400 vd~~~~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +.+.. ..+..++.+.| ++.||.+.....|..  +.+.+.+||+.+...    +++|++++++.|+++++.
T Consensus       333 i~~~~-~~~~~~l~~~L~~~~gi~v~~~~~p~~--~~~~~~lRis~~~~~----t~edi~~l~~~l~~~~~~  397 (407)
T PRK09064        333 VMVGD-PEKCKKASDMLLEEHGIYVQPINYPTV--PRGTERLRITPTPFH----TDEMIDHLVEALVEVWAR  397 (407)
T ss_pred             EEeCC-HHHHHHHHHHHHHhCCEEEeeECCCCC--CCCCceEEEEeCCCC----CHHHHHHHHHHHHHHHHH
Confidence            55431 12345566665 567999976433321  223467999977554    589999999999988753

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.89  E-value=2.9e-21  Score=206.29  Aligned_cols=343  Identities=15%  Similarity=0.153  Sum_probs=207.5

Q ss_pred             ccceEecCCC-CChHHHHHHHhhh-hhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceeeecCChH
Q 010008           94 KSLELIASEN-FTSRAVMEAVGSC-LTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSGS  169 (520)
Q Consensus        94 ~~i~Liasen-~~~~~V~ea~~s~-l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V~~~sGs  169 (520)
                      +.|+|..++. +.++..++++... +...    ||.     ........|+.+.+++++.++.  .+.+- .+|.+++|+
T Consensus        95 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~----Y~~-----p~g~~~~~e~iv~~y~~~~~~~~~~~~~~-~~V~it~Ga  164 (521)
T TIGR03801        95 DIISYVIDQLGFDPDAFLYEMCDGIIGDN----YPV-----PDRMLPHSEKIVHQYLIQEMCGNKPPPGE-FDLFAVEGG  164 (521)
T ss_pred             HHHhhcCCCCCCCCCHHHHHHHHHhhcCC----CCC-----CCCCHHHHHHHHHHHHHhhccCCCCCCCc-CeEEEeCCH
Confidence            4577776663 3344444554444 3222    321     1112345666666677766543  22110 267778888


Q ss_pred             -HHHHHHHHh-----hCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-C-----CCCCHHHHHHH
Q 010008          170 -PANFEVYTA-----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-T-----GLVDYDMLEKT  237 (520)
Q Consensus       170 -~A~~~~l~a-----ll~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~-----~~iD~d~le~~  237 (520)
                       +|+..++.+     +++|||+|++++|.|..+..        .+.+.+...++++++.+++ .     +.+|.++++++
T Consensus       165 t~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~--------~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~  236 (521)
T TIGR03801       165 TAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLE--------IPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKL  236 (521)
T ss_pred             HHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHH--------HHHHhcCCcEEEEeecccccccccccCCCCHHHHHHh
Confidence             888888876     78999999999997755431        2233443456777666532 2     78999999998


Q ss_pred             hhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHh--CCEEEEechhhcccccccccCCCCC---cccEEEeccCccc
Q 010008          238 AILFRPKLIIAGASAYPR--DFD---YPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK---YCDVVTTTTHKSL  307 (520)
Q Consensus       238 i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~--g~~li~D~Ah~~gli~~~~~~~p~~---~aDiv~~S~hK~l  307 (520)
                      +++ ++|+|++++|+||+  .++   +++|.++|+++  +++||+|+++. .+..  .+.+.+.   .--+++.|++|++
T Consensus       237 ~~~-~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~-~f~~--~~~sl~~~~~~~vI~v~SfSK~f  312 (521)
T TIGR03801       237 RDP-SIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYG-TFVD--DFRSLFAELPYNTIGVYSFSKYF  312 (521)
T ss_pred             cCC-CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCch-hhcc--cccchhhhCCCCEEEEEcchhhc
Confidence            876 89999999999997  454   67778889887  99999999853 4432  1122222   1237889999986


Q ss_pred             --CCCCceEEEeeCCCc---ch----hhHHHhhcc-----------------------cCCC-CCC--CCChHHHHH--H
Q 010008          308 --RGPRGGMIFFKKDPV---LG----VELESAINN-----------------------AVFP-GLQ--GGPHNHTIG--G  350 (520)
Q Consensus       308 --~GprgG~I~~~~~~~---~~----~~l~~~i~~-----------------------~~~p-~~~--g~p~~~~ia--a  350 (520)
                        +|||.||++.+++..   ..    .+..+.+++                       .+.. ...  .+|.-.+++  +
T Consensus       313 g~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a  392 (521)
T TIGR03801       313 GATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFS  392 (521)
T ss_pred             cCchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Confidence              899999999986310   00    001111110                       0000 011  233233334  2


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEec-CCCCCeeEEEEecCCC---------------CCH-HHHH
Q 010008          351 LAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVS-GGSDNHLVLVDLRPMG---------------IDG-ARVE  413 (520)
Q Consensus       351 la~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~-~gt~~~~~~vd~~~~g---------------~~~-~~~~  413 (520)
                      +..++.. .....++..+.+.++++.+.+.|   |+.+.. +....+++++|+...+               .+. +.+.
T Consensus       393 ~~all~~-~~~y~~~~~~~~~~R~~~l~~~L---g~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~  468 (521)
T TIGR03801       393 LFALMDK-ENAYKAETKDICRRREKLLFRGL---GLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLF  468 (521)
T ss_pred             HHHHhcc-chhHHHHHHHHHHHHHHHHHHhc---CCCCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHH
Confidence            3223332 11223566677777777777777   554321 2223567788886321               123 4466


Q ss_pred             HHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          414 KILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       414 ~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      +++++.||.+    +||.......+++||++..     .++++++++.+.|.+.+...
T Consensus       469 ~L~~e~gV~v----~PG~~Fg~~~~~vRisla~-----l~~~~~~~~~~rl~~~~~~~  517 (521)
T TIGR03801       469 RLAEETGIVL----LPGGGFGGPEWSVRVSLAN-----LNEYDYAEIGRAIRKILDEY  517 (521)
T ss_pred             HHHHhCCEEE----eCchhcCCCCCeEEEEecC-----CCHHHHHHHHHHHHHHHHHH
Confidence            7788999999    6776521124679999743     34789999999999887644

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PLN02822 serine palmitoyltransferase

Probab=99.89  E-value=9.8e-21  Score=202.88  Aligned_cols=336  Identities=16%  Similarity=0.191  Sum_probs=215.8

Q ss_pred             ccceEecCC--C-CChHHHHHHHhhhhhccCCCCCCCCC-CCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH
Q 010008           94 KSLELIASE--N-FTSRAVMEAVGSCLTNKYSEGLPGKR-YYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS  169 (520)
Q Consensus        94 ~~i~Liase--n-~~~~~V~ea~~s~l~~~y~~G~p~~r-yy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs  169 (520)
                      +.|+|..+.  + ..++.|++++...+. +|..|+.+.| +|+..+...++|    ++++++++.+.     .|..++|.
T Consensus       110 ~~id~~s~~~lgl~~~~~i~ea~~~al~-~~G~g~~g~r~~yg~~~~~~~Le----e~La~~~~~~~-----~i~~s~G~  179 (481)
T PLN02822        110 DVVNFASANYLGLIGNEKIKESCTSALE-KYGVGSCGPRGFYGTIDVHLDCE----TKIAKFLGTPD-----SILYSYGL  179 (481)
T ss_pred             eEEEeECCCcCCCCCCHHHHHHHHHHHH-HhCCCCcccCccccCHHHHHHHH----HHHHHHhCCCC-----EEEECCHH
Confidence            457775432  1 258999999988775 4555676655 456555555555    78889999763     35557887


Q ss_pred             HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh--------c
Q 010008          170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL--------F  241 (520)
Q Consensus       170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~--------~  241 (520)
                      .++.+++.+++++||.|+.....|.+..        ..+.+.+.  +++.++.+      |.++++..+++        .
T Consensus       180 ~a~~sai~a~~~~gd~Ii~d~~~H~s~~--------~~~~ls~~--~~~~~~~n------d~~~l~~~l~~~~~~~~~~~  243 (481)
T PLN02822        180 STIFSVIPAFCKKGDIIVADEGVHWGIQ--------NGLYLSRS--TIVYFKHN------DMESLRNTLEKLTAENKRKK  243 (481)
T ss_pred             HHHHHHHHHhCCCCCEEEEeCCccHHHH--------HHHHHcCC--eEEEECCC------CHHHHHHHHHHHhhhhcccC
Confidence            7899999999999999997655443221        12334454  55565543      33444333321        1


Q ss_pred             CC-cEEEEcCCC--CCCCCCHHHHHHHHHHhCCEEEEechhhcccccc-c--c--cCC-CCCcccEEEeccCcccCCCCc
Q 010008          242 RP-KLIIAGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-S--V--VAD-PFKYCDVVTTTTHKSLRGPRG  312 (520)
Q Consensus       242 ~p-klIi~~~s~--~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~-~--~--~~~-p~~~aDiv~~S~hK~l~Gprg  312 (520)
                      ++ ++|++....  .+...|+++|+++|++||++|++|++|..|.... |  .  +.. +....|++++|++|++ |..|
T Consensus       244 ~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKal-g~~G  322 (481)
T PLN02822        244 KLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHAL-ATEG  322 (481)
T ss_pred             CCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhh-hhCC
Confidence            34 677776443  3448899999999999999999999998775431 1  1  111 1124789999999998 4667


Q ss_pred             eEEEeeCCCcchhhHHHhhcccCCCCCCCC--ChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEe
Q 010008          313 GMIFFKKDPVLGVELESAINNAVFPGLQGG--PHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLV  389 (520)
Q Consensus       313 G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~--p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~  389 (520)
                      |++++++      ++.+.+......+..++  |...+.|+++ +|+...  ...+..+++.++++.+.+.|.+. |+.+.
T Consensus       323 G~i~g~~------~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~-aL~~l~--~~~~~~~~l~~~~~~l~~~L~~~~g~~~~  393 (481)
T PLN02822        323 GFCTGSA------RVVDHQRLSSSGYVFSASLPPYLASAAIT-AIDVLE--DNPSVLAKLKENIALLHKGLSDIPGLSIG  393 (481)
T ss_pred             eEEEcCH------HHHHHHHhcCCceeeccccCHHHHHHHHH-HHHHHH--hCHHHHHHHHHHHHHHHHHHHhcCCcccC
Confidence            9999987      56665543322223332  3444444443 676543  23567788999999999999884 88775


Q ss_pred             cCCCCCeeEEEEecCC-CC---C---HHHHHHH-HhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHH
Q 010008          390 SGGSDNHLVLVDLRPM-GI---D---GARVEKI-LDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA  461 (520)
Q Consensus       390 ~~gt~~~~~~vd~~~~-g~---~---~~~~~~~-L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la  461 (520)
                      .+ ..+.++++.+... +.   +   ..++.+. |+++||.+.....|.-.....+.++|+++.+    +++++|+++++
T Consensus       394 ~~-~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~----~~t~edI~~~~  468 (481)
T PLN02822        394 SN-TLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSA----GHTESDILKAS  468 (481)
T ss_pred             CC-CCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECC----CCCHHHHHHHH
Confidence            43 2456777777431 10   1   1334444 4589999975322321111124579997653    35699999999


Q ss_pred             HHHHHHHHH
Q 010008          462 DFIHEGVEI  470 (520)
Q Consensus       462 ~~i~~~l~~  470 (520)
                      +.|++++..
T Consensus       469 ~~l~~~~~~  477 (481)
T PLN02822        469 ESLKRVAAS  477 (481)
T ss_pred             HHHHHHHHH
Confidence            999988764

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.89  E-value=1.5e-20  Score=197.29  Aligned_cols=331  Identities=18%  Similarity=0.201  Sum_probs=207.3

Q ss_pred             ccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC--CCCCCCceeeecCChH
Q 010008           94 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSGS  169 (520)
Q Consensus        94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg--~~~~~~~~~V~~~sGs  169 (520)
                      +.++|..+++  .+++.+.+++......  ..+|+.   ..|   ..++.+...+++. ..|  ++++    +|.+++|+
T Consensus        31 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~--~~~Y~~---~~g---~~~lr~~ia~~~~-~~~~~~~~~----~i~~t~G~   97 (397)
T PRK07568         31 KVYHLNIGQPDIKTPEVFFEAIKNYDEE--VLAYSH---SQG---IPELREAFAKYYK-KWGIDVEPD----EILITNGG   97 (397)
T ss_pred             CEEEecCCCCCCCCCHHHHHHHHHHhcC--CcCcCC---CCC---CHHHHHHHHHHHH-HhCCCCCcc----eEEEcCCh
Confidence            4577877665  3678888888765422  123332   112   2344433334443 233  4554    55567776


Q ss_pred             -HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCC-C-CCHHHHHHHhhhcCCcEE
Q 010008          170 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG-L-VDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       170 -~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~-~-iD~d~le~~i~~~~pklI  246 (520)
                       +|+..++.++++|||+|++++|.|..+..        .....|.  +++.++++.+++ . .|++++++++++ ++++|
T Consensus        98 ~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~g~~~~~~~~l~~~~~~-~~~~v  166 (397)
T PRK07568         98 SEAILFAMMAICDPGDEILVPEPFYANYNG--------FATSAGV--KIVPVTTKIEEGFHLPSKEEIEKLITP-KTKAI  166 (397)
T ss_pred             HHHHHHHHHHhcCCCCEEEEecCCCccHHH--------HHHHcCC--EEEEeecCcccCCCCCCHHHHHHhcCc-cceEE
Confidence             89999999999999999999987654321        1223454  555666653333 3 468999999877 89999


Q ss_pred             EEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccc-cCCCCC--c-cc--EEEeccCccc--CCCCce
Q 010008          247 IAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV-VADPFK--Y-CD--VVTTTTHKSL--RGPRGG  313 (520)
Q Consensus       247 i~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~~p~~--~-aD--iv~~S~hK~l--~GprgG  313 (520)
                      ++++|+||+  ..   ++++|.++|+++|+++++|++ +.++.+.+. .++...  . .+  +++.|+||++  +|.|.|
T Consensus       167 ~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~-y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G  245 (397)
T PRK07568        167 LISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEV-YREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIG  245 (397)
T ss_pred             EEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEecc-chhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceE
Confidence            988888887  34   578899999999999999998 445554432 122211  1 22  7889999987  588999


Q ss_pred             EEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCC
Q 010008          314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGG  392 (520)
Q Consensus       314 ~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~g  392 (520)
                      |++++++     ++.+.+....... .+.+...+. +++.+++.. ...+++..+.+.++++.+.+.|.+. |+.+..+ 
T Consensus       246 ~~~~~~~-----~~~~~~~~~~~~~-~~~s~~~q~-~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p-  316 (397)
T PRK07568        246 CLISKNK-----ELIAAAMKLCQAR-LSPPTLEQI-GAAALLDTP-ESYFDEVREEYKKRRDILYEELNKIPGVVCEKP-  316 (397)
T ss_pred             EEecCCH-----HHHHHHHHHhhcc-CCCCcHHHH-HHHHHhhCC-HHHHHHHHHHHHHHHHHHHHHHhcCCCceecCC-
Confidence            9998643     5555443222111 233333333 333345421 2234666777888889999999874 6665443 


Q ss_pred             CCCeeEEEEecCCCCCHHHHHHHHh-h-----cCeEEcCCCCCCCC----CCCCCCEEEEccCCccccCCCHHHHHHHHH
Q 010008          393 SDNHLVLVDLRPMGIDGARVEKILD-M-----ASITLNKNSVPGDK----SALVPGGIRIGSPAMTTRGFSEKEFVAIAD  462 (520)
Q Consensus       393 t~~~~~~vd~~~~g~~~~~~~~~L~-~-----~gI~v~~~~~Pg~~----~~~~~~giRig~~~~tt~g~~~~d~~~la~  462 (520)
                      ..+.++|+++..  .+..++.+.|. +     .||.+.    ||..    ....++++||+..      .+++++++..+
T Consensus       317 ~g~~~~~~~l~~--~~~~~~~~~l~~~~~~~~~gv~v~----pg~~f~~~~~~~~~~iRls~~------~~~~~~~~~~~  384 (397)
T PRK07568        317 KGAFYIIAKLPV--DDAEDFAKWLLTDFNYNGETVMVA----PASGFYATPGLGKNEIRIAYV------LNEEDLKRAME  384 (397)
T ss_pred             CcceEEEEecCC--CCHHHHHHHHHhhcccccceEEEe----CchHhcCCCCCCCCeEEEEEe------CCHHHHHHHHH
Confidence            234556777743  24555555553 3     689984    4432    1123468999863      23688999998


Q ss_pred             HHHHHHHH
Q 010008          463 FIHEGVEI  470 (520)
Q Consensus       463 ~i~~~l~~  470 (520)
                      .|.++++.
T Consensus       385 ~l~~~l~~  392 (397)
T PRK07568        385 ILKEALEK  392 (397)
T ss_pred             HHHHHHHH
Confidence            88887764

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.89  E-value=5.6e-21  Score=198.85  Aligned_cols=320  Identities=13%  Similarity=0.113  Sum_probs=206.4

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-CCC
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKP  182 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al-l~p  182 (520)
                      ..++..++++...+...+.        ++..+.+.++|    +++++++|.+.     .|.+.||++|+.+++.++ ++|
T Consensus         8 ~~~~~e~~a~~~~~~~~~~--------~~~g~~~~~~e----~~la~~~g~~~-----~v~~~sgt~aL~~~l~al~~~p   70 (376)
T TIGR02379         8 PVTGQELEYIAEAISEGKL--------SGDGPFSRRCE----TWLENRTGTKK-----ALLTPSCTAALEMAALLLDIQP   70 (376)
T ss_pred             CCCHHHHHHHHHHHHcCCc--------cCCcHHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHcCCCC
Confidence            3456667777777655431        21124456666    67888888864     244567779999888888 899


Q ss_pred             CCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHH
Q 010008          183 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRM  262 (520)
Q Consensus       183 GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i  262 (520)
                      ||+|++++++|.+...        .+...|.  +++.++++++++.+|++++++++++ ++|+|+..++ ++...|+++|
T Consensus        71 Gd~Viv~~~t~~~~~~--------~~~~~G~--~~v~vd~d~~~~~~d~~~le~~i~~-~tk~Iip~~~-~G~~~d~~~I  138 (376)
T TIGR02379        71 GDEVIMPSYTFVSTAN--------AFVLRGA--KIVFVDIRPDTMNIDETLIESAITH-RTKAIVPVHY-AGVACDMDTI  138 (376)
T ss_pred             cCEEEECCCCcHHHHH--------HHHHcCC--EEEEEecCCCcCCCCHHHHHHhcCc-CceEEEEeCC-CCCccCHHHH
Confidence            9999999987755421        2334455  7788888876788999999999987 8999986543 4568899999


Q ss_pred             HHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCc--cc-CCCCceEEEeeCCCcchhhHHHhhcccCCCCC
Q 010008          263 RQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHK--SL-RGPRGGMIFFKKDPVLGVELESAINNAVFPGL  339 (520)
Q Consensus       263 ~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK--~l-~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~  339 (520)
                      .++|+++|++||+|++|..|....+....  ...|+.++|+|+  .+ +|++||+++++++     ++.+++......|.
T Consensus       139 ~~la~~~~i~vIeDaa~~~g~~~~~~~~g--~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~-----~~~~~~~~~~~~g~  211 (376)
T TIGR02379       139 MALANKHQLFVIEDAAQGVMSTYKGRALG--SIGHLGTFSFHETKNYTSGGEGGALLINDQ-----AFIERAEIIREKGT  211 (376)
T ss_pred             HHHHHHCCCEEEEECccccCCccCCcccC--CCCCEEEEeCCCCCcCcccCCceEEEECCH-----HHHHHHHHHHHhCC
Confidence            99999999999999999887644332111  145888888885  44 5779999999875     55554432111000


Q ss_pred             -----------------CCC-ChHH-HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC---C-CEEe--cCCC-
Q 010008          340 -----------------QGG-PHNH-TIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL---G-YKLV--SGGS-  393 (520)
Q Consensus       340 -----------------~g~-p~~~-~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~---G-~~v~--~~gt-  393 (520)
                                       .|. ..+. ..||+.  +.++  ..+++..++.+++++.+.+.|.+.   + ..+.  .++. 
T Consensus       212 ~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g--~~qL--~~l~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~  287 (376)
T TIGR02379       212 NRSQFFRGEVDKYTWRDIGSSYLPSELQAAYL--WAQL--EQADRINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQ  287 (376)
T ss_pred             CCccccccCCCcceeeeecccCCccHHHHHHH--HHHH--HHhHHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCe
Confidence                             111 1111 223332  2222  234556677777777778887652   2 2221  1121 


Q ss_pred             -CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCC----CC-------------CCEEEEccCCccccCCCHH
Q 010008          394 -DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSA----LV-------------PGGIRIGSPAMTTRGFSEK  455 (520)
Q Consensus       394 -~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~----~~-------------~~giRig~~~~tt~g~~~~  455 (520)
                       ..|++++.+.. +.+.+++.+.|.+.||.++..+.|.+..+    +.             ...|.+  |..  .+++++
T Consensus       288 ~~~~~~~i~~~~-~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~L--P~~--~~l~~~  362 (376)
T TIGR02379       288 HNAHMFYIKLKD-EDDRNELIKYLKEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRL--PLY--YGLSKE  362 (376)
T ss_pred             eeeEEEEEEECC-cCCHHHHHHHHHHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEc--cCC--CCCCHH
Confidence             11344455532 34678899999999999886665654311    10             112444  322  358899


Q ss_pred             HHHHHHHHHHHHH
Q 010008          456 EFVAIADFIHEGV  468 (520)
Q Consensus       456 d~~~la~~i~~~l  468 (520)
                      |++++++.|++++
T Consensus       363 ~~~~i~~~i~~~~  375 (376)
T TIGR02379       363 DQARVIQTICDYL  375 (376)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998764

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.89  E-value=6.6e-21  Score=202.53  Aligned_cols=342  Identities=16%  Similarity=0.161  Sum_probs=217.0

Q ss_pred             ccceEecCCCCC-hHHHHHHHhhhhhc-----cCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC----CCCCCCceee
Q 010008           94 KSLELIASENFT-SRAVMEAVGSCLTN-----KYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN----LDENKWGVNV  163 (520)
Q Consensus        94 ~~i~Liasen~~-~~~V~ea~~s~l~~-----~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg----~~~~~~~~~V  163 (520)
                      ..|+|...||.+ ...+.+.+.+...-     .+.......-||++......+.+...+++.+.+|    ++++    +|
T Consensus        48 g~i~l~~aeN~l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~----~I  123 (447)
T PLN02607         48 GVIQMGLAENQVSFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPD----RI  123 (447)
T ss_pred             ceEEEechhhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHH----He
Confidence            358999999975 44555555443220     0100001112344333345666666677777776    4554    56


Q ss_pred             ecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccc-cccceEEEEEcccCCC-CCCCCHHHHHHHhhh
Q 010008          164 QPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS-GTSIYFESMPYRLDES-TGLVDYDMLEKTAIL  240 (520)
Q Consensus       164 ~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~-~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~  240 (520)
                      .+++|+ +|+.+++.++++|||.|++++|.|+++..        .+. ..|.  ++++++++.+ ++.+|.++++++++.
T Consensus       124 vit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~--------~~~~~~g~--~vv~v~~~~~~~f~~~~~~le~a~~~  193 (447)
T PLN02607        124 VLTAGATAANELLTFILADPGDALLVPTPYYPGFDR--------DLRWRTGV--KIVPIHCDSSNNFQVTPQALEAAYQE  193 (447)
T ss_pred             EEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHH--------HHHhcCCc--EEEEEeCCCCCCCcCCHHHHHHHHHH
Confidence            678988 89999999999999999999998876532        122 2344  6667766643 357999999998764


Q ss_pred             -----cCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccc-cCCCC------C--c-cc--E
Q 010008          241 -----FRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VADPF------K--Y-CD--V  298 (520)
Q Consensus       241 -----~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~~p~------~--~-aD--i  298 (520)
                           .++|+|++++|+||+  ..+   +++|.++|+++|+++|+|++ |++.++.+. +.+..      .  . .+  +
T Consensus       194 a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEi-Ya~~~f~~~~f~S~~s~~~~~~~~~~~~~v~  272 (447)
T PLN02607        194 AEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEI-YSGSVFSASEFVSVAEIVEARGYKGVAERVH  272 (447)
T ss_pred             HHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEecc-ccccccCCCCcccHHHHHhhcCCCCCcCcEE
Confidence                 378999999999997  444   77888999999999999998 455444321 11110      0  0 12  5


Q ss_pred             EEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchh-----HHHHHHHH
Q 010008          299 VTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF-----KVYQNKVV  371 (520)
Q Consensus       299 v~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~-----~~~~~~i~  371 (520)
                      ++.|++|.+  +|.|.|++++.++     ++...+......  .+.++..+ .+++..|.   +.+|     .+..+++.
T Consensus       273 vi~s~SK~fg~~GlRvG~ivs~n~-----~l~~~~~~~~~~--~~~s~~~q-~~~~~~L~---d~~~~~~~l~~~r~~l~  341 (447)
T PLN02607        273 IVYSLSKDLGLPGFRVGTIYSYND-----KVVTTARRMSSF--TLVSSQTQ-HLLASMLS---DEEFTENYIRTNRERLR  341 (447)
T ss_pred             EEEcchhcCCCCcceEEEEEEcCH-----HHHHHHHHHhhc--CCCCHHHH-HHHHHHhC---CchhHHHHHHHHHHHHH
Confidence            778999976  7899999998542     555544432211  11122222 22222232   2222     34456667


Q ss_pred             HHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCC---C-CCH-HHHH-HHHhhcCeEEcCCCCCCCC-CCCCCCEEEEcc
Q 010008          372 SNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM---G-IDG-ARVE-KILDMASITLNKNSVPGDK-SALVPGGIRIGS  444 (520)
Q Consensus       372 ~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~---g-~~~-~~~~-~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~  444 (520)
                      ++++.+.+.|++.|+++..+ ....++|++++..   . .+. .++. ++++++||.+    .||.. ....++++||++
T Consensus       342 ~~~~~~~~~L~~~gi~~~~~-~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v----~pG~~f~~~~~g~fRi~f  416 (447)
T PLN02607        342 KRYEMIVQGLRRAGIECLKG-NAGLFCWMNLSPLLETPTREGELALWDSILREVKLNI----SPGSSCHCSEPGWFRVCF  416 (447)
T ss_pred             HHHHHHHHHHHhCCCCcccC-CeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEE----cCccccCCCCCCEEEEEe
Confidence            77888889999888876553 3356788888531   0 122 2344 5566789999    45554 233578999986


Q ss_pred             CCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          445 PAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       445 ~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      ..     ..++++++..+.|.+++...
T Consensus       417 a~-----~~~~~l~~gl~Ri~~~l~~~  438 (447)
T PLN02607        417 AN-----MSEDTLEVALKRIHRFMDRR  438 (447)
T ss_pred             cc-----CCHHHHHHHHHHHHHHHHHH
Confidence            53     34788999999998888654

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.89  E-value=1.5e-21  Score=200.84  Aligned_cols=282  Identities=17%  Similarity=0.115  Sum_probs=191.6

Q ss_pred             chhHHHHHHHHHHHHHHHcCCC-CCCCceeeecCChHHHHHHHHHhhCC------------CCC--EEEEcCCCCCcccc
Q 010008          134 NEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAILK------------PHD--RIMGLDLPHGGHLS  198 (520)
Q Consensus       134 ~~~~d~lE~~a~~~~~~lfg~~-~~~~~~~V~~~sGs~A~~~~l~all~------------pGD--~Vl~~~~~~~ghls  198 (520)
                      .+...++|+.+++++++++|++ .+..  .+.+++|++||+.++.++..            +||  .|++.++.|.+.. 
T Consensus        33 ~~~~~~le~~~~~~~~~~~g~~~~~~~--~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~-  109 (345)
T cd06450          33 SPAATEMEAEVVNWLAKLFGLPSEDAD--GVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVE-  109 (345)
T ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCC--EEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHH-
Confidence            3456789999999999999997 3222  24456666999988888742            333  6777776654321 


Q ss_pred             ccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc-----CCcEEEEcCCCCCC--CCCHHHHHHHHHHhCC
Q 010008          199 HGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAGASAYPR--DFDYPRMRQIADAVGA  271 (520)
Q Consensus       199 ~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~-----~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~  271 (520)
                             +.....|.  +++.+++++ ++.+|+++|++.+++.     +|++|+++.+++++  ..|+++|.++|+++|+
T Consensus       110 -------~~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~  179 (345)
T cd06450         110 -------KAAAYLDV--KVRLVPVDE-DGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDL  179 (345)
T ss_pred             -------HHHHHHhc--CeEEeeeCC-CCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCC
Confidence                   12233344  566666663 4689999999998752     57888877666654  7799999999999999


Q ss_pred             EEEEechhhcccccccccC---CCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHH
Q 010008          272 LLMMDMAHISGLVAASVVA---DPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHT  347 (520)
Q Consensus       272 ~li~D~Ah~~gli~~~~~~---~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~  347 (520)
                      ++++|+||..+........   ..+.++|++++|+||++.+|.+ |+++.+                             
T Consensus       180 ~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~-----------------------------  230 (345)
T cd06450         180 WLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR-----------------------------  230 (345)
T ss_pred             eEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH-----------------------------
Confidence            9999999877764322111   1123689999999999877655 665432                             


Q ss_pred             HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCCeeEEEEecCC---CCCHHHHHHHHhhcCeEE
Q 010008          348 IGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVLVDLRPM---GIDGARVEKILDMASITL  423 (520)
Q Consensus       348 iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~~~~vd~~~~---g~~~~~~~~~L~~~gI~v  423 (520)
                      +.++..+++.+...++++..++..++++++.+.|.+. |+.++.+. +..++.+.+.+.   +++..++.+.|.+.|+.+
T Consensus       231 ~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~  309 (345)
T cd06450         231 ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEP-NLSLVCFRLKPSVKLDELNYDLSDRLNERGGWH  309 (345)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-ceeEEEEEECCcchhhHHHHHHHHHHHhcCCEE
Confidence            2333445555544567888889999999999999874 78776532 345556655432   344567888888886544


Q ss_pred             cCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          424 NKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       424 ~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      ..    +.... .++.+|++.....   .+++|++++++.|++
T Consensus       310 ~~----~~~~~-~~~~lRis~~~~~---~t~~di~~l~~~l~~  344 (345)
T cd06450         310 VP----ATTLG-GPNVLRFVVTNPL---TTRDDADALLEDIER  344 (345)
T ss_pred             EE----eeEEC-CeEEEEEEecCCC---CCHHHHHHHHHHHHh
Confidence            21    11101 3568999986542   248999999998865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>PRK02769 histidine decarboxylase; Provisional

Probab=99.89  E-value=4.5e-20  Score=191.68  Aligned_cols=316  Identities=16%  Similarity=0.115  Sum_probs=210.1

Q ss_pred             HHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCC-CceeeecCChHHHHHHHHHhh--CCCC
Q 010008          107 RAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENK-WGVNVQPLSGSPANFEVYTAI--LKPH  183 (520)
Q Consensus       107 ~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~-~~~~V~~~sGs~A~~~~l~al--l~pG  183 (520)
                      ...++.+...+.+.+  |.|......|.. ..++|+.++++++++||+++++ |+  +.+++||++|+.++.+.  +.|+
T Consensus        36 ~~~~~~~~~~~~~n~--gnp~~~~~~g~~-~~~~e~~~~~~~a~l~g~~~~~~~G--~~TsGgTean~~a~~~ar~~~~~  110 (380)
T PRK02769         36 YSALKRFFSFSINNC--GDPYSKSNYPLN-SFDFERDVMNFFAELFKIPFNESWG--YITNGGTEGNLYGCYLARELFPD  110 (380)
T ss_pred             HHHHHHHHHhhhccC--CCccccCCCCCC-hHHHHHHHHHHHHHHhCCCCCCCCE--EEecChHHHHHHHHHHHHHhCCC
Confidence            345555555555543  555433222222 3568888999999999998654 32  22344569988766543  4688


Q ss_pred             CEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc--CCcEEEEcCCCCC--CCCCH
Q 010008          184 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYP--RDFDY  259 (520)
Q Consensus       184 D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~--~pklIi~~~s~~p--~~~d~  259 (520)
                      ++|++++.+|.+..        +.....|....  .++++ +++.+|+++|++++++.  +|.+|+++..++.  ...|+
T Consensus       111 ~~ii~s~~~H~Sv~--------ka~~~lg~~~~--~V~~~-~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi  179 (380)
T PRK02769        111 GTLYYSKDTHYSVS--------KIARLLRIKSR--VITSL-PNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNI  179 (380)
T ss_pred             cEEEeCCCceehHH--------HHHHHcCCCCc--eeccC-CCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCH
Confidence            99999887765442        12333444333  34455 36899999999999873  3888887755544  38899


Q ss_pred             HHHHHHHHHhC---CEEEEechhhcccccccccCCCCC---cccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhc
Q 010008          260 PRMRQIADAVG---ALLMMDMAHISGLVAASVVADPFK---YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAIN  332 (520)
Q Consensus       260 ~~i~~ia~~~g---~~li~D~Ah~~gli~~~~~~~p~~---~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~  332 (520)
                      ++|+++|+++|   +++++|+||+.+.+.......++.   ++|.+++|+||++.+|.| |+++++++      ....+.
T Consensus       180 ~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~vDsis~s~HK~~~~P~g~G~l~~r~~------~~~~~~  253 (380)
T PRK02769        180 KEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAKKK------YVERIS  253 (380)
T ss_pred             HHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccCCCCEEEECCcccCCCCCCcEEEEEehh------hhhhcc
Confidence            99999999998   699999998877664321111222   699999999999988998 99999983      333321


Q ss_pred             c------cCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCC
Q 010008          333 N------AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMG  406 (520)
Q Consensus       333 ~------~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g  406 (520)
                      .      ..-+...|+.+...+++++.+|+.+...++++..++..++++++.+.|.+.|++++...   ....+.++.. 
T Consensus       254 ~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~g~~~~~~p---~~~~v~f~~~-  329 (380)
T PRK02769        254 VDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQANGIPAWRNP---NSITVVFPCP-  329 (380)
T ss_pred             cCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEcCC---CceEEEEcCC-
Confidence            1      01123467877778888999999888788899999999999999999998999987642   2233334432 


Q ss_pred             CCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          407 IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       407 ~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                       + +.+   .  .|..++.          .+..+||....-    .+.+.++.+.+-+...+.
T Consensus       330 -~-~~~---~--~~w~l~~----------~~~~~hi~~~~~----~~~~~~~~f~~dl~~~~~  371 (380)
T PRK02769        330 -S-ERI---W--KKWHLAT----------SGNQAHIITMPH----HNKQQIDSLIDELIFDLK  371 (380)
T ss_pred             -C-HHH---H--hCeeEcc----------cCCEEEEEECCC----CCHHHHHHHHHHHHHHHh
Confidence             2 222   1  4554432          134788854322    345677766666655554

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.89  E-value=6e-21  Score=197.72  Aligned_cols=316  Identities=18%  Similarity=0.208  Sum_probs=215.0

Q ss_pred             CCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccc
Q 010008          127 GKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKR  206 (520)
Q Consensus       127 ~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~  206 (520)
                      |..-|+|.+...++|    +.++++||.++     -|.++||+.|+.++....++|||+|  +++.+-.       +...
T Consensus        63 GDe~yag~~s~~~lE----~~va~~~G~~~-----av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~-------Tt~a  124 (450)
T TIGR02618        63 GDEAYAGSRNFYHLE----RTVRELYGFKY-----VVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFT-------TTRY  124 (450)
T ss_pred             cchhhcCCCcHHHHH----HHHHHHHCCCe-----EEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHH-------HHHH
Confidence            334477778788998    67888999986     3667899999777666679999988  4443311       1111


Q ss_pred             ccccccceEEEEEcccC---------CCCCCCCHHHHHHHhhhc---CCcEEEEcCCCC---CCC---CCHHHHHHHHHH
Q 010008          207 RVSGTSIYFESMPYRLD---------ESTGLVDYDMLEKTAILF---RPKLIIAGASAY---PRD---FDYPRMRQIADA  268 (520)
Q Consensus       207 ~v~~~g~~~~~v~~~~d---------~~~~~iD~d~le~~i~~~---~pklIi~~~s~~---p~~---~d~~~i~~ia~~  268 (520)
                      .+...|.  .++.++.+         +.++.+|+++|++++++.   ++++|.+..++|   +.+   .+++++.++|++
T Consensus       125 hIe~~Ga--v~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~  202 (450)
T TIGR02618       125 HQEKNGA--TFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEA  202 (450)
T ss_pred             HHHhCCe--EEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHH
Confidence            1334454  33333222         456899999999999863   233554443333   224   468999999999


Q ss_pred             hCCEEEEechhhccccc------ccccCCC--------CCcccEEEeccCcccCCCCceEEEeeCCCcchhhHHHhhccc
Q 010008          269 VGALLMMDMAHISGLVA------ASVVADP--------FKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNA  334 (520)
Q Consensus       269 ~g~~li~D~Ah~~gli~------~~~~~~p--------~~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i~~~  334 (520)
                      +|+.|+.|+||..|--+      .+....+        +.++|.+++|+||...+|-||+|.++++     ++.++++..
T Consensus       203 ~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~GG~l~~~d~-----~l~~k~r~~  277 (450)
T TIGR02618       203 HGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIGGFLCMNDD-----EMFQSAKEL  277 (450)
T ss_pred             cCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCceEEEeCCH-----HHHHHHHHH
Confidence            99999999999885311      1222222        3489999999999999999999998886     777776654


Q ss_pred             --CCCCC--CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCC--CC-
Q 010008          335 --VFPGL--QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM--GI-  407 (520)
Q Consensus       335 --~~p~~--~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~--g~-  407 (520)
                        .+.|+  .|+.....+.|++++|++...   ..|.++...++++|++.|.+.|++++.+ +..|.+++|....  .+ 
T Consensus       278 ~~~~eG~~tyGgla~r~~~ala~gL~e~~~---~~y~~~r~~~a~~La~~L~~~Gvpv~~p-~ggh~V~vda~~~lph~~  353 (450)
T TIGR02618       278 VVVFEGMPSYGGLAGRDMEAMAIGIREAVD---YEYIEHRVKQVRYLGDKLKAAGVPIVEP-VGGHAVFLDARRFLPHIP  353 (450)
T ss_pred             hhhcCCccccCchhhhhHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHCCCcccCC-CCcceEEEEhHHhCCCCC
Confidence              34443  344344578888999988764   3677888888999999999999999764 4569899987532  12 


Q ss_pred             ----CHHH-HHHHHhhcCeEEc-CCCC-----CCCCCCCC--CCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHHHHH
Q 010008          408 ----DGAR-VEKILDMASITLN-KNSV-----PGDKSALV--PGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEA  474 (520)
Q Consensus       408 ----~~~~-~~~~L~~~gI~v~-~~~~-----Pg~~~~~~--~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~~~~  474 (520)
                          .+.. +..+..+.||... .+++     |.......  -.-+|+..|   +|-.|.+.|+++++.+..+.++...+
T Consensus       354 ~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaip---rr~yt~~h~~~v~~~~~~~~~~~~~~  430 (450)
T TIGR02618       354 QDQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIP---RRVYTYAHMDVVADGIIKLYKHRDDI  430 (450)
T ss_pred             hhhChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccc---cccccHhHHHHHHHHHHHHHhhHhhc
Confidence                2333 3444567887642 2222     21111111  245899755   56789999999999999999876544

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.89  E-value=1.6e-21  Score=201.49  Aligned_cols=277  Identities=16%  Similarity=0.120  Sum_probs=186.6

Q ss_pred             HHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCC-CEEEEcCCCCCccccccccccccccccccceEEEEEccc
Q 010008          145 QKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL  222 (520)
Q Consensus       145 ~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~  222 (520)
                      ++++++.+|++++    +|.+++|+ +++..++.++++|| |+|++++|+|+.+.        ......|.  +++.+++
T Consensus        63 ~~~~a~~~g~~~~----~I~~~~Gs~e~i~~~~~~~~~~g~~~vli~~P~y~~y~--------~~~~~~G~--~~~~v~~  128 (351)
T PRK01688         63 IENYAAYAGVKPE----QVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYS--------VSAETIGV--EIRTVPT  128 (351)
T ss_pred             HHHHHHHhCCCHH----HEEEcCCHHHHHHHHHHHhcCCCCCEEEEcCCCHHHHH--------HHHHHcCC--EEEEeec
Confidence            3678888999986    67779998 89999999999997 99999998764321        12344565  5666666


Q ss_pred             CCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHh--CCEEEEechhhcccccccccCCCCC-ccc
Q 010008          223 DESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK-YCD  297 (520)
Q Consensus       223 d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~--g~~li~D~Ah~~gli~~~~~~~p~~-~aD  297 (520)
                      + +++.+|++++++++ + ++|+|++++|+||+  .++.+++.++++..  +++||+|+++ ..+.........+. +..
T Consensus       129 ~-~~~~~d~~~l~~~~-~-~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay-~~f~~~~s~~~~~~~~~n  204 (351)
T PRK01688        129 L-DNWQLDLPAIADNL-D-GVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAY-IEFCPQASLAGWLAEYPH  204 (351)
T ss_pred             C-CCCCCCHHHHHHhc-c-CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECch-hhcCCCCChHHHHhhCCC
Confidence            6 35889999999887 4 79999999999997  77777777776543  6899999995 33331110000011 223


Q ss_pred             -EEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010008          298 -VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNC  374 (520)
Q Consensus       298 -iv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na  374 (520)
                       +++.|++|++  +|.|.|++++++      ++.+.+.+...+...+  ...+.+|. .+|.......+++..+++.+++
T Consensus       205 ~iv~rSfSK~~glaGlRiGy~i~~~------~~i~~l~~~~~~~~v~--~~~~~~a~-~~L~~~~~~~~~~~~~~~~~~r  275 (351)
T PRK01688        205 LVILRTLSKAFALAGLRCGFTLANE------EVINLLLKVIAPYPLS--TPVADIAA-QALSPQGIAAMRERVAEINANR  275 (351)
T ss_pred             EEEEecchHhhcCHHHHHhHHhCCH------HHHHHHHhccCCCCCC--HHHHHHHH-HHHhcchHHHHHHHHHHHHHHH
Confidence             7889999976  688899999987      6777776554332211  22222222 2343210122356677788888


Q ss_pred             HHHHHHHHHC-CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCC
Q 010008          375 RALASRLVEL-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFS  453 (520)
Q Consensus       375 ~~l~~~L~~~-G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~  453 (520)
                      +.+.+.|.+. |+..+.+ +..+++++++.    +.+++.+.|.+.||.+....    ..+..++++||++.       +
T Consensus       276 ~~l~~~L~~~~~~~~~~p-s~~nfi~~~~~----~~~~l~~~L~~~gi~vr~~~----~~~~~~~~iRis~~-------~  339 (351)
T PRK01688        276 QWLIAALKEIPCVEQVFD-SETNYILARFT----ASSAVFKSLWDQGIILRDQN----KQPGLSNCLRITIG-------T  339 (351)
T ss_pred             HHHHHHHHhCCCCCeECC-CCCcEEEEEcC----CHHHHHHHHHHCCeEEEECC----CcCCCCCeEEEeCC-------C
Confidence            9999999885 6643333 23456777763    46778888889999996431    11113578999864       3


Q ss_pred             HHHHHHHHHHH
Q 010008          454 EKEFVAIADFI  464 (520)
Q Consensus       454 ~~d~~~la~~i  464 (520)
                      ++|++++.+.|
T Consensus       340 ~~e~~~l~~al  350 (351)
T PRK01688        340 REECQRVIDAL  350 (351)
T ss_pred             HHHHHHHHHhh
Confidence            68999998876

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.89  E-value=9.9e-21  Score=194.34  Aligned_cols=327  Identities=22%  Similarity=0.253  Sum_probs=225.9

Q ss_pred             ceEecCCCCC----hHHHHHHHhhhhhccCCCCCCCCCC-CCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHH
Q 010008           96 LELIASENFT----SRAVMEAVGSCLTNKYSEGLPGKRY-YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP  170 (520)
Q Consensus        96 i~Liasen~~----~~~V~ea~~s~l~~~y~~G~p~~ry-y~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~  170 (520)
                      +++ .|.||.    +|.+++++...+. +|.-|..+.|. +|..+...+||    +.+++++|.+..     +..+||-.
T Consensus        42 ~nf-~SNdYLGLa~~~~~~~a~~~~~~-~~g~g~~gsR~i~G~~~~h~~LE----~~lA~f~g~e~a-----l~f~SGy~  110 (388)
T COG0156          42 LNF-CSNDYLGLASHPELIEAAKAAIR-RYGVGAGGSRLISGTSDLHVELE----EELADFLGAEAA-----LLFSSGFV  110 (388)
T ss_pred             Eee-eccCcccccCCHHHHHHHHHHHH-HhCCCCCCcCcccCCcHHHHHHH----HHHHHHhCCCcE-----EEEcccch
Confidence            444 366664    6889999887765 45557778884 44455556788    689999999863     55689999


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc-----CCcE
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKL  245 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~-----~pkl  245 (520)
                      ||..++.+|+++||.|+.-.+.|-+.+.        .+..++.  +.+.|.      ..|+++||+.+++.     ++++
T Consensus       111 AN~~~i~~l~~~~dli~~D~lnHASiid--------G~rls~a--~~~~f~------HnD~~~Le~~l~~~~~~~~~~~~  174 (388)
T COG0156         111 ANLGLLSALLKKGDLIFSDELNHASIID--------GIRLSRA--EVRRFK------HNDLDHLEALLEEARENGARRKL  174 (388)
T ss_pred             hHHHHHHHhcCCCcEEEEechhhhhHHH--------HHHhCCC--cEEEec------CCCHHHHHHHHHhhhccCCCceE
Confidence            9999999999999999988876644321        2344454  444543      25889999998762     1456


Q ss_pred             EEEc--CCCCCCCCCHHHHHHHHHHhCCEEEEechhhccccccc---cc-CCCCC--cccEEEeccCcccCCCCceEEEe
Q 010008          246 IIAG--ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAAS---VV-ADPFK--YCDVVTTTTHKSLRGPRGGMIFF  317 (520)
Q Consensus       246 Ii~~--~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~---~~-~~p~~--~aDiv~~S~hK~l~GprgG~I~~  317 (520)
                      |++.  +|..+...|+++|+++|++||++|++|+||..|.....   .. .-.+.  ..||+++|++|.|+ --||++.+
T Consensus       175 IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlG-s~Gg~v~g  253 (388)
T COG0156         175 IVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALG-SSGGYIAG  253 (388)
T ss_pred             EEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhc-ccCceeeC
Confidence            6665  67777799999999999999999999999999987531   11 11111  35899999999985 67899999


Q ss_pred             eCCCcchhhHHHhhcccCCCCCCCCCh-HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCe
Q 010008          318 KKDPVLGVELESAINNAVFPGLQGGPH-NHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH  396 (520)
Q Consensus       318 ~~~~~~~~~l~~~i~~~~~p~~~g~p~-~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~  396 (520)
                      +.      .+.+.+.....|.+.++.. ....++...+++.+.  +..+..+++.++...+...+...|+.+..  ..++
T Consensus       254 ~~------~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~--~~~~~r~~L~~~~~~~~~~~~~~~~~~~~--s~s~  323 (388)
T COG0156         254 SA------ALIDYLRNRARPFIFSTALPPAVAAAALAALRILE--EGPERRERLQELAAFFRSLLKALGLVLLP--SESP  323 (388)
T ss_pred             cH------HHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHhcCCccCC--CCCC
Confidence            88      6766665444444433322 233334445677654  34667788888899888777767887643  3455


Q ss_pred             eEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          397 LVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       397 ~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      ++.+-+.+.. ....+...|.+.||.+..-..|-  -|.++..||++..+    .++++|++++++.+.++
T Consensus       324 I~pv~~gd~~-~a~~~s~~l~~~Gi~v~~i~~PT--Vp~gtarlRi~lta----~ht~~~I~~l~~~l~~~  387 (388)
T COG0156         324 IIPVILGDEE-RALEASRALLEEGIYVSAIRPPT--VPKGTARLRITLTA----AHTEEDIDRLAEALSEV  387 (388)
T ss_pred             eeeeEeCCHH-HHHHHHHHHHHCCeeEeeecCCC--CCCCcceEEEEecC----CCCHHHHHHHHHHHHhh
Confidence            5544443221 23455566666699997543332  23456889998765    46799999999998764

>PLN02672 methionine S-methyltransferase

Probab=99.89  E-value=7.7e-21  Score=215.04  Aligned_cols=332  Identities=13%  Similarity=0.108  Sum_probs=215.4

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhcc-CCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNK-YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-  169 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~-y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-  169 (520)
                      +.|.|..+||+  +|+.|++++...+... ++.|+|            .+.+..++++++.+|++.+.. -+|.+++|+ 
T Consensus       698 ~vI~LsinE~d~ppPp~V~eAi~eal~~~~~s~g~p------------dlr~aLa~~la~~~Gv~~d~~-e~IIvt~Gs~  764 (1082)
T PLN02672        698 SLIHMDVDESFLPVPSAVKASIFESFVRQNISESET------------DPRPSILQFIKSNYGFPTDSC-TEFVYGDTSL  764 (1082)
T ss_pred             CEEEEeCCCCCCCCCHHHHHHHHHHHhhcCCCCCCh------------HHHHHHHHHHHHHhCcCCCCC-CEEEEeCCHH
Confidence            56899988875  6899999998766431 111222            123345578999999976411 146678898 


Q ss_pred             HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEEEE
Q 010008          170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIA  248 (520)
Q Consensus       170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklIi~  248 (520)
                      +++..++.++++|||.|++++|.|+.+.        ..+.+.|.  +++.++++++ ++.+|+++++++++..+.++|++
T Consensus       765 elL~lll~aLl~pGD~VLVp~PtY~~Y~--------~~a~~~Ga--~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L  834 (1082)
T PLN02672        765 ALFNKLVLCCVQEGGTLCFPAGSNGTYV--------SAAKFLKA--NFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYI  834 (1082)
T ss_pred             HHHHHHHHHHcCCCCEEEEeCCChHHHH--------HHHHHcCC--EEEEEecccccCCCCCHHHHHHHhccCCCCEEEE
Confidence            7777888999999999999999876543        23445565  6667777643 57899999999987633456777


Q ss_pred             cCCC-CCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-------c-----ccEEEeccCccc-
Q 010008          249 GASA-YPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-------Y-----CDVVTTTTHKSL-  307 (520)
Q Consensus       249 ~~s~-~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-------~-----aDiv~~S~hK~l-  307 (520)
                      +.|+ ||+  .+   .+++|.++|+++|++||+|++ |.++.+.+...  .++.       .     .-+++.|++|.+ 
T Consensus       835 ~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEa-YsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~  913 (1082)
T PLN02672        835 SGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTS-FSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELL  913 (1082)
T ss_pred             ECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCC-CCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhc
Confidence            7776 887  34   577888889999999999999 45555533211  0110       1     115678999864 


Q ss_pred             -CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHh--cCc----hhHHHHHHHHHHHHHHHHH
Q 010008          308 -RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA--QSP----EFKVYQNKVVSNCRALASR  380 (520)
Q Consensus       308 -~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~--~~~----~~~~~~~~i~~na~~l~~~  380 (520)
                       +|+|.||++++++     ++.+.+....  ...+.....+.++.+ ++...  ...    ..+++.+.+.++++.+.+.
T Consensus       914 lpGLRIGylIap~~-----eLi~~l~~~~--~~s~~~~~~q~Aaaa-alall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~  985 (1082)
T PLN02672        914 SGGHEFGFLALNDS-----VLIDAFHSAP--GLSRPHSTLKYTIKK-LLGLKNQKSSDLLDGVAEQKKILKSRAERLKET  985 (1082)
T ss_pred             cHHHHheeEEeCCH-----HHHHHHHHhh--hhcCCCcHHHHHHHH-HHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence             8999999999763     4666665421  111111223333221 22111  111    2355667788999999999


Q ss_pred             HHHCCCEEecCCCCCeeEEEEecC----------------CCCCHHHHHH-HHhhcCeEEcCCCCCCCCCCCCCCEEEEc
Q 010008          381 LVELGYKLVSGGSDNHLVLVDLRP----------------MGIDGARVEK-ILDMASITLNKNSVPGDKSALVPGGIRIG  443 (520)
Q Consensus       381 L~~~G~~v~~~gt~~~~~~vd~~~----------------~g~~~~~~~~-~L~~~gI~v~~~~~Pg~~~~~~~~giRig  443 (520)
                      |.+.|+.+..+ ..+.++|+++..                .+++..++.+ +++++||.++    ||... ..++++||+
T Consensus       986 L~~~Gi~v~~P-eGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~----PGs~F-G~~g~~RIs 1059 (1082)
T PLN02672        986 LEACGWDVLEP-QGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCIN----SSSWT-GIPGYCRFS 1059 (1082)
T ss_pred             HHHCCCeEecC-CcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEe----cCccc-CCCCeEEEE
Confidence            99989887654 235666766531                0245555555 4456799995    44321 125789998


Q ss_pred             cCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          444 SPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       444 ~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ..      ..++++++..+.|.+...
T Consensus      1060 fa------~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672       1060 FA------LEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred             ec------CCHHHHHHHHHHHHHHHH
Confidence            64      346788888888876544

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.89  E-value=1.3e-20  Score=195.49  Aligned_cols=316  Identities=13%  Similarity=0.106  Sum_probs=205.8

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      +.|+|..++|+  +|+.+++++...+..  ..+||..      . ...+.    +.+++.++++++    +|.+++|+ +
T Consensus        23 ~~i~l~~~~n~~~~~~~~~~a~~~~~~~--~~~Y~~~------~-~~~Lr----~aia~~~~v~~~----~I~it~G~~~   85 (360)
T PRK07392         23 AILDFSASINPLGPPESVIAAIQSALSA--LRHYPDP------D-YRELR----LALAQHHQLPPE----WILPGNGAAE   85 (360)
T ss_pred             cEEEeCCcCCCCCCCHHHHHHHHHHHHH--hhcCCCc------C-HHHHH----HHHHHHhCcChh----hEEECCCHHH
Confidence            45888888875  678899998776653  2234431      1 12333    456666788886    56779998 8


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCC----CCCHHHHHHHhhhcCCcEE
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG----LVDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~----~iD~d~le~~i~~~~pklI  246 (520)
                      ++..++.++. +||+|++++|.|.++.        ..+...|.  +++.++++.+++    ..|++++++.. . +++++
T Consensus        86 ~i~~~~~~l~-~g~~vlv~~P~y~~~~--------~~~~~~g~--~~~~v~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~  152 (360)
T PRK07392         86 LLTWAGRELA-QLRAVYLITPAFGDYR--------RALRAFGA--TVKELPLPLDQPSPGLTLRLQTLPPQL-T-PNDGL  152 (360)
T ss_pred             HHHHHHHHhC-CCCeEEEECCCcHHHH--------HHHHHcCC--eEEEEecccccCCcccccCHHHHHHhc-c-CCCEE
Confidence            8888888765 7899999999876542        13344565  666666664433    25677776543 3 68999


Q ss_pred             EEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCC---C-cc-cEEEeccCccc--CCCCceEEEe
Q 010008          247 IAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YC-DVVTTTTHKSL--RGPRGGMIFF  317 (520)
Q Consensus       247 i~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~---~-~a-Div~~S~hK~l--~GprgG~I~~  317 (520)
                      +++.|+||+  .++.++|.++|+++++ +|+|++ |..+...+..++.+   . +. -+++.|++|++  +|.|.||+++
T Consensus       153 ~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~-y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~  230 (360)
T PRK07392        153 LLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEA-FMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIA  230 (360)
T ss_pred             EEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECc-hhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeC
Confidence            999999998  7789999999999985 666998 44555433222211   1 11 27789999976  7999999999


Q ss_pred             eCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCC
Q 010008          318 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF-KVYQNKVVSNCRALASRLVEL-GYKLVSGGSDN  395 (520)
Q Consensus       318 ~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~-~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~  395 (520)
                      ++      ++.+++.....+  .+. +.....++..+++   ...+ +...+.+.++++.+.+.|++. |+.+..+  ..
T Consensus       231 ~~------~~~~~~~~~~~~--~~~-s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~--~~  296 (360)
T PRK07392        231 HP------DRLQRWQQWRDP--WPV-NGLAAAAAIAALA---DRDFQQQTWAWLPPAREALFQGLASLPGLTPLPS--AA  296 (360)
T ss_pred             CH------HHHHHHHhhCCC--CCC-CHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCC--CC
Confidence            87      566666543322  122 2223333333443   2334 444566777888899999874 7776543  34


Q ss_pred             eeEEEEecCCCCCHHHHHH-HHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          396 HLVLVDLRPMGIDGARVEK-ILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       396 ~~~~vd~~~~g~~~~~~~~-~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +++|+++..   +..++.+ +|+++||.+.    ||.. +...++++||++..       .++++++.+.+++++.
T Consensus       297 ~fl~~~~~~---~~~~l~~~ll~~~gv~v~----pg~~f~~~~~~~iRi~~~~-------~~~~~~l~~al~~~~~  358 (360)
T PRK07392        297 NFLLVQSQG---SALQLQEKLLQQHRILIR----DCLSFPELGDRYFRVAVRT-------EAENQRLLEALAAILA  358 (360)
T ss_pred             CEEEEEcCC---CHHHHHHHHHhhCCEEEE----eCCCCCCCCCCEEEEEeCC-------HHHHHHHHHHHHHHhh
Confidence            566777642   4455554 4678999995    4443 22235799998642       4678888888887664

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=99.89  E-value=1.1e-20  Score=186.02  Aligned_cols=332  Identities=18%  Similarity=0.128  Sum_probs=221.6

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCC-C-ceeeecCChH-HHHHHHHHhhC
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENK-W-GVNVQPLSGS-PANFEVYTAIL  180 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~-~-~~~V~~~sGs-~A~~~~l~all  180 (520)
                      .+++.+.+|+...+...-..||...   .|-   .    .||+.++++.+-+.+. . .-.|..|+|. +|+..++.+|.
T Consensus        78 ~ts~~a~~Av~~al~Sgk~N~Yaps---~G~---~----~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA  147 (447)
T KOG0259|consen   78 RTSQEAEQAVVDALRSGKGNGYAPS---VGI---L----PARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLA  147 (447)
T ss_pred             cCCHHHHHHHHHHHhcCCCCCcCCc---ccc---H----HHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhc
Confidence            4788888888777665444455221   111   1    2445555553332110 0 0246678887 99999999999


Q ss_pred             CCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CC
Q 010008          181 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF  257 (520)
Q Consensus       181 ~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~  257 (520)
                      +||-.||++.|.+.        .+.......+  .++.+|++-++ ++.||++.+|.++.+ +|.+|++..|+||.  +.
T Consensus       148 ~p~aNILlPrPGfp--------~Y~~~a~~~~--lEVR~ydlLPe~~weIDL~~veal~DE-NT~AivviNP~NPcGnVy  216 (447)
T KOG0259|consen  148 NPGANILLPRPGFP--------LYDTRAIYSG--LEVRYYDLLPEKDWEIDLDGVEALADE-NTVAIVVINPNNPCGNVY  216 (447)
T ss_pred             CCCCceecCCCCCc--------hHHHhhhhcC--ceeEeecccCcccceechHHHHHhhcc-CeeEEEEeCCCCCCcccc
Confidence            99999999988543        2221223344  47777877665 589999999999998 99999999999985  44


Q ss_pred             C---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-c---cc-EEEeccCc-cc-CCCCceEEEeeCCCcchh--
Q 010008          258 D---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-Y---CD-VVTTTTHK-SL-RGPRGGMIFFKKDPVLGV--  325 (520)
Q Consensus       258 d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~---aD-iv~~S~hK-~l-~GprgG~I~~~~~~~~~~--  325 (520)
                      .   +++|+++|+++|+.+|+|+. |-.+++.+....|+. .   +- +.+++.+| |+ +|||.|||+.++..+...  
T Consensus       217 s~~HL~kiae~A~klgi~vIaDEV-Y~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRlGWi~~hD~~gvf~~~  295 (447)
T KOG0259|consen  217 SEDHLKKIAETAKKLGIMVIADEV-YGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRLGWIALHDPRGVFRDT  295 (447)
T ss_pred             cHHHHHHHHHHHHHhCCeEEehhh-cceeecCCCCccchhhccccCceEeecccccccccCCceeeeEEEecccccccch
Confidence            3   77899999999999999998 445565554333432 1   22 55689999 55 999999999998643211  


Q ss_pred             hHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecCCCCCeeEEEEecC
Q 010008          326 ELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLVLVDLRP  404 (520)
Q Consensus       326 ~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~gt~~~~~~vd~~~  404 (520)
                      ...+.+..  +-....+|.....+|+-.-|+..-++.|+....-++.|++..++.|++ .++.+........+.++.+..
T Consensus       296 ~~~q~~~~--~~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPeg~mylmv~l~~  373 (447)
T KOG0259|consen  296 KVVQGIKN--FLDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPEGCMYLMVKLNL  373 (447)
T ss_pred             HHHHHHHH--HHhccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCCcceEEEeccch
Confidence            11122221  112234566666777776677655444687888899999999999998 677744332334555654421


Q ss_pred             -----CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          405 -----MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       405 -----~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                           ..-|.+.+.++..+..+.+    +||..-. .++++||...      +.++.+++..++|++....
T Consensus       374 s~~~~~~dD~dFc~kL~~Eesv~~----LPG~af~-~~nw~Ri~i~------~~~~~leea~~Rik~Fc~R  433 (447)
T KOG0259|consen  374 SLFPDIEDDVDFCQKLAREESVIC----LPGQAFG-LKNWLRIVIT------VEEEMLEEAFSRIKEFCDR  433 (447)
T ss_pred             hhhccccccHHHHHHHhhhcceEE----ecccccc-CCCeEEEEEc------cChHHHHHHHHHHHHHHHh
Confidence                 1224466788888999999    8887621 4789999743      4567788888888776654

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.88  E-value=1.5e-20  Score=194.68  Aligned_cols=313  Identities=16%  Similarity=0.151  Sum_probs=202.9

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      +.|+|..++|+  +|+.+++++.+.+..  ..+||..    |   ...+.    +.+++.++++++    +|.+++|+ +
T Consensus        31 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~~----~---~~~lr----~~ia~~~~~~~~----~I~it~G~~~   93 (357)
T PRK14809         31 DLVKLSSNENPHGPSPAAVEAIREAAER--VHSYPKA----S---HADLT----AALADRWDVSPE----QVWLANGGDG   93 (357)
T ss_pred             ceeEecCCCCCCCCCHHHHHHHHHHHhh--hhcCCCC----C---HHHHH----HHHHHHhCCCcc----eEEECCCHHH
Confidence            56888888774  678899998876643  2345431    1   22333    456677899886    56678988 8


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC-CCCCCCHHHHHHHhhhcCCcEEEEc
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIAG  249 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-~~~~iD~d~le~~i~~~~pklIi~~  249 (520)
                      ++..++.++++|||.|++++|.|..+.        ......|.  .++.++++. +++.+|.+++++.. + ++|+|+++
T Consensus        94 al~~~~~~~~~~gd~V~v~~P~y~~~~--------~~~~~~g~--~~~~~~l~~~~~~~~~~~~~~~~~-~-~~k~i~l~  161 (357)
T PRK14809         94 ALDYLARAMLDPGDTVLVPDPGFAYYG--------MSARYHHG--EVREYPVSKADDFEQTADTVLDAY-D-GERIVYLT  161 (357)
T ss_pred             HHHHHHHHhcCCCCEEEEeCCChHHHH--------HHHHHcCC--eEEEEecccCcCCCcCHHHHHHhh-c-CCcEEEEe
Confidence            999999999999999999999764221        12234455  444444543 34678888887765 3 68999999


Q ss_pred             CCCCCC--CCCHHHHHHHHHHh--CCEEEEechhhcccccccccCCCCC-ccc-EEEeccCccc--CCCCceEEEeeCCC
Q 010008          250 ASAYPR--DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK-YCD-VVTTTTHKSL--RGPRGGMIFFKKDP  321 (520)
Q Consensus       250 ~s~~p~--~~d~~~i~~ia~~~--g~~li~D~Ah~~gli~~~~~~~p~~-~aD-iv~~S~hK~l--~GprgG~I~~~~~~  321 (520)
                      +|+||+  .++.+++.++++..  +++||+|+++ ..+...+....-+. ... +++.|++|++  +|.|.||+++++  
T Consensus       162 ~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y-~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~--  238 (357)
T PRK14809        162 SPHNPTGSEIPLDEVEALAERTDEETLVVVDEAY-GEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPE--  238 (357)
T ss_pred             CCCCCCCcCCCHHHHHHHHHhCccCcEEEEechh-hhccCCchhHHHHhhCCCEEEEecchhHhcCcchhheeeecCH--
Confidence            999997  77888777777654  8899999984 34443211000011 112 6778999987  699999999987  


Q ss_pred             cchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEE
Q 010008          322 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV  400 (520)
Q Consensus       322 ~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~-~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~v  400 (520)
                          ++.+++.+...+.  +.+...+.+++ .+|.   .++ +++..+.+.++++.+.+.|...++   .+  ...++|+
T Consensus       239 ----~~~~~~~~~~~~~--~~~~~~~~~a~-~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~---~~--~g~f~~~  303 (357)
T PRK14809        239 ----EWADAYARVNTPF--AASELACRAGL-AALD---DDEHVERTVETARWAREYIREELDAPTW---ES--AGNFVLA  303 (357)
T ss_pred             ----HHHHHHHHhCCCC--CCCHHHHHHHH-HHhC---CHHHHHHHHHHHHHHHHHHHHHhcCccC---CC--CCCEEEE
Confidence                6777666543221  22222223322 2332   223 355666677777777777754322   22  2356677


Q ss_pred             EecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          401 DLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       401 d~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ++.    +..++.+.|+++||.+..    |.... .+++|||+..       +.+++++..+.|.++++
T Consensus       304 ~~~----~~~~~~~~l~~~gv~v~~----g~~f~-~~~~iRls~~-------~~~~~~~~l~~L~~~l~  356 (357)
T PRK14809        304 EVG----DASAVAEAAQERGVIVRD----CTSFG-LPECIRITCG-------TREETERAVEVLNEVLA  356 (357)
T ss_pred             ECC----CHHHHHHHHHHCCEEEEE----CccCC-CCCeEEEecC-------CHHHHHHHHHHHHHHhc
Confidence            663    456777888899999954    43211 2478999853       25789999888877653

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.88  E-value=1.5e-20  Score=194.49  Aligned_cols=314  Identities=15%  Similarity=0.134  Sum_probs=206.9

Q ss_pred             cceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HH
Q 010008           95 SLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PA  171 (520)
Q Consensus        95 ~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A  171 (520)
                      .++|..++|+  .|+.+.+++...+..  ..+||..      . ..++    ++.++++++++++    +|.+++|+ ++
T Consensus        21 ~~~l~~~~~~~~~p~~~~~a~~~~~~~--~~~Y~~~------~-~~~l----r~~ia~~~~~~~~----~i~it~Ga~~~   83 (354)
T PRK06358         21 ILDFSANINPLGVPESLKQAITENLDK--LVEYPDP------D-YLEL----RKRIASFEQLDLE----NVILGNGATEL   83 (354)
T ss_pred             eEEecCCCCCCCCCHHHHHHHHHHHHh--hhcCCCc------c-HHHH----HHHHHHHhCCChh----hEEECCCHHHH
Confidence            5788888775  578999998876542  1234431      1 2333    3567778899886    66779998 88


Q ss_pred             HHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEEEEcC
Q 010008          172 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGA  250 (520)
Q Consensus       172 ~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklIi~~~  250 (520)
                      +..++.++ .+ |+|++++|.|+.+..        .....|.  +++.++++.+ ++.+| +++.+.+.. ++++|+++.
T Consensus        84 l~~~~~~~-~~-~~v~i~~P~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d-~~~~~~~~~-~~~~v~~~~  149 (354)
T PRK06358         84 IFNIVKVT-KP-KKVLILAPTFAEYER--------ALKAFDA--EIEYAELTEETNFAAN-EIVLEEIKE-EIDLVFLCN  149 (354)
T ss_pred             HHHHHHHh-CC-CcEEEecCChHHHHH--------HHHHcCC--eeEEEeCccccCCCcc-HHHHHhhcc-CCCEEEEeC
Confidence            88888876 44 689999998764421        2233454  5666666543 35789 666666665 799998889


Q ss_pred             CCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC---ccc--EEEeccCccc--CCCCceEEEee
Q 010008          251 SAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK---YCD--VVTTTTHKSL--RGPRGGMIFFK  318 (520)
Q Consensus       251 s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~---~aD--iv~~S~hK~l--~GprgG~I~~~  318 (520)
                      |+||+  ..+   +++|.++|+++|+++|+|++ |..+...+...+++.   ..+  +++.|++|++  +|.|.||++++
T Consensus       150 P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~-Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~  228 (354)
T PRK06358        150 PNNPTGQLISKEEMKKILDKCEKRNIYLIIDEA-FMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTS  228 (354)
T ss_pred             CCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCc-ccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecC
Confidence            99997  444   77888889999999999998 455554432222221   112  7789999986  79999999986


Q ss_pred             CCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCCe
Q 010008          319 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF-KVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNH  396 (520)
Q Consensus       319 ~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~-~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~  396 (520)
                      ++     .+.+.+.....+.  +.....+. +...++.   ...+ ++..+.+.++++.+.+.|.+. |+.+..++  ..
T Consensus       229 ~~-----~~~~~~~~~~~~~--~~~~~~q~-~~~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~--g~  295 (354)
T PRK06358        229 NK-----NLAEKLLQMREPW--SINTFADL-AGQTLLD---DKEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKPS--VN  295 (354)
T ss_pred             CH-----HHHHHHHHhCCCC--cchHHHHH-HHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCc--ce
Confidence            43     5666665433221  11112222 2222332   2233 666778888899999999874 76665542  34


Q ss_pred             eEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          397 LVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       397 ~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      ++|+.+.    +..++.+.|.++||.+.    ||+. +...+++|||++.       +.++++++.+.+++++
T Consensus       296 f~~~~~~----~~~~~~~~l~~~gI~v~----~~~~f~~~~~~~iRls~~-------~~~~~~~l~~~l~~~~  353 (354)
T PRK06358        296 FIFFKLE----KPIDLRKELLKKGILIR----SCSNYRGLDENYYRVAVK-------SREDNKKLLKALEVIL  353 (354)
T ss_pred             EEEEEcC----chHHHHHHHHHCCeEEE----ECCCCCCCCCCEEEEEeC-------CHHHHHHHHHHHHHHh
Confidence            6677664    23667777778999994    4443 2224578999864       2689999999998765

>PRK05839 hypothetical protein; Provisional

Probab=99.88  E-value=1.5e-20  Score=195.88  Aligned_cols=323  Identities=15%  Similarity=0.143  Sum_probs=200.0

Q ss_pred             ccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceeeecCChH
Q 010008           94 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSGS  169 (520)
Q Consensus        94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V~~~sGs  169 (520)
                      ..|+|..+++  .+++.+.+++......  ...|+..   .|   ..++.+...+++++.+|.  +++    +|.+++|+
T Consensus        25 ~~i~l~~~~p~~~~~~~~~~a~~~~~~~--~~~Y~~~---~G---~~~lr~aia~~l~~~~g~~~~~~----~I~it~G~   92 (374)
T PRK05839         25 KGLDLTIGEPQFETPKFIQDALKNNAHL--LNKYPKS---AG---EESLREAQRGFFKRRFKIELKEN----ELIPTFGT   92 (374)
T ss_pred             CeEEcCCCCCCCCCCHHHHHHHHHHhhc--cCCCCCC---CC---CHHHHHHHHHHHHHHhCCCCCcc----eEEEecCc
Confidence            5577877775  3678888888765421  2234331   12   234555555778888784  554    77889998


Q ss_pred             -HHHHHHHHhhC--CCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcE
Q 010008          170 -PANFEVYTAIL--KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKL  245 (520)
Q Consensus       170 -~A~~~~l~all--~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pkl  245 (520)
                       +|+..++.+++  ++||.|++++|.|..+..        .....|.  ++++++++++ .+.+|.++.+  + + ++|+
T Consensus        93 ~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~--------~~~~~g~--~v~~v~~~~~~~~~~d~~~~~--~-~-~~k~  158 (374)
T PRK05839         93 REVLFNFPQFVLFDKQNPTIAYPNPFYQIYEG--------AAIASRA--KVLLMPLTKENDFTPSLNEKE--L-Q-EVDL  158 (374)
T ss_pred             HHHHHHHHHHHhcCCCCCEEEECCCCchhhHH--------HHHhcCC--EEEEeecccccCCcCCcchhh--h-c-cccE
Confidence             78877777764  589999999997765421        2334554  6777777643 3566665432  2 3 6999


Q ss_pred             EEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC---------ccc-EEEeccCcc--cC
Q 010008          246 IIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK---------YCD-VVTTTTHKS--LR  308 (520)
Q Consensus       246 Ii~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~---------~aD-iv~~S~hK~--l~  308 (520)
                      |+++.|+||+  .+   .+++|.++|+++|++||+|+++ ..+...+..++.+.         +.. +++.|++|+  ++
T Consensus       159 v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y-~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~  237 (374)
T PRK05839        159 VILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECY-SEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAP  237 (374)
T ss_pred             EEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccch-hhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCc
Confidence            9999999997  44   4667778889999999999984 34432221221110         112 778999996  48


Q ss_pred             CCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEE
Q 010008          309 GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL  388 (520)
Q Consensus       309 GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v  388 (520)
                      |.|.||+++++      ++.+++.........+.+...+.++. .++..  ....+...+++.++++.+.+.|   |+. 
T Consensus       238 GlRiG~ii~~~------~~~~~~~~~~~~~~~~~~~~~q~~~~-~~l~~--~~~~~~~~~~~~~~~~~~~~~l---~~~-  304 (374)
T PRK05839        238 GLRSGFIAGDA------SILKKYKAYRTYLGCASPLPLQKAAA-VAWLD--DEHAEFFRNIYAKNLKLAREIL---GIT-  304 (374)
T ss_pred             cceeEEEecCH------HHHHHHHHHHhhcCCCCChHHHHHHH-HHhcc--chHHHHHHHHHHHHHHHHHHhc---CCC-
Confidence            99999999986      66666544321111233333333332 23321  2233566777777777766655   443 


Q ss_pred             ecCCCCCeeEEEEecCCCCCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          389 VSGGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       389 ~~~gt~~~~~~vd~~~~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      ..  ..+.++|+++.    +..++.+.| +++||.+..+...+. ....++++||++.      .+++++++..+.|.++
T Consensus       305 ~p--~gg~fi~~~~~----~~~~~~~~l~~~~gi~v~pg~~f~~-~~~~~~~iRis~~------~~~~~~~~~l~~l~~~  371 (374)
T PRK05839        305 IP--PATFYVWLPVD----NDEEFTKKLYQNEGIKVLPGSFLGR-NGIGKGYVRIALV------YDTPKLEKALEIIKTY  371 (374)
T ss_pred             CC--CeeEEEEEeCC----ChHHHHHHHHHHCCEEEeCchhhCC-CCCCCCeEEEEec------CCHHHHHHHHHHHHHH
Confidence            22  23566787774    234554555 569999943321111 1113589999974      2378888888888876


Q ss_pred             HH
Q 010008          468 VE  469 (520)
Q Consensus       468 l~  469 (520)
                      +.
T Consensus       372 l~  373 (374)
T PRK05839        372 LE  373 (374)
T ss_pred             hh
Confidence            64

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.88  E-value=6.4e-20  Score=193.10  Aligned_cols=338  Identities=11%  Similarity=0.026  Sum_probs=219.5

Q ss_pred             CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC-C-CCCceeeecCChHHHHHHHHHhhC
Q 010008          103 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-E-NKWGVNVQPLSGSPANFEVYTAIL  180 (520)
Q Consensus       103 n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~-~-~~~~~~V~~~sGs~A~~~~l~all  180 (520)
                      .++.|.+.+++.+.+...+  |.|..   .|.  ..++|+.+++++++++|++ + +++.. +.+++||+||+.++.+..
T Consensus        51 t~~~p~~~~~~~~~l~~~~--~np~s---~~~--~~~le~~~~~~la~llg~~~~~~~~~g-~~TsGgTEAn~~al~~ar  122 (431)
T TIGR01788        51 TWMEPEARKLMDETINKNM--IDKDE---YPQ--TAEIENRCVNMLADLWHAPAKDAEAVG-TSTIGSSEAIMLGGLAMK  122 (431)
T ss_pred             CCCCHHHHHHHHHHHhcCC--CCccc---Ccc--HHHHHHHHHHHHHHHhCCCCCCCCCeE-EEechHHHHHHHHHHHHH
Confidence            4667889999988886433  44432   122  2388889999999999998 3 34422 223556699998876542


Q ss_pred             --------CCC-----CEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 010008          181 --------KPH-----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII  247 (520)
Q Consensus       181 --------~pG-----D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi  247 (520)
                              +.|     -+|++.+.+|.+..        +.....|.  ++..+++|++++.+|+++|++++++ +|.+|+
T Consensus       123 ~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~--------ka~~~lg~--~v~~i~~d~~~~~vd~~~L~~~i~~-~t~lV~  191 (431)
T TIGR01788       123 WRWRKRMEAAGKPTDKPNLVMGSNVQVCWE--------KFARYFDV--ELREVPMDPGRYVIDPEQVVEAVDE-NTIGVV  191 (431)
T ss_pred             HHHHHHHHhcCCCCCCcEEEEcCcchHHHH--------HHHHHcCc--eeEEEecCCCceeeCHHHHHHHHhh-CCeEEE
Confidence                    112     25777766554322        12333453  5566667753468999999999988 788888


Q ss_pred             EcCCCCC--CCCCHHHHHHHHHHh------CCEEEEechhhcccccc--cccCCC--CCcccEEEeccCcccCCCCc-eE
Q 010008          248 AGASAYP--RDFDYPRMRQIADAV------GALLMMDMAHISGLVAA--SVVADP--FKYCDVVTTTTHKSLRGPRG-GM  314 (520)
Q Consensus       248 ~~~s~~p--~~~d~~~i~~ia~~~------g~~li~D~Ah~~gli~~--~~~~~p--~~~aDiv~~S~hK~l~Gprg-G~  314 (520)
                      +...++.  ...|+++|+++|+++      |+++++|+|+..+....  +..+..  ..++|.++.|.|||+.||.| |+
T Consensus       192 ~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g~G~  271 (431)
T TIGR01788       192 CILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPGVGW  271 (431)
T ss_pred             EEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCCcEE
Confidence            8754443  388999999999999      99999999987554321  112222  23799999999999889998 99


Q ss_pred             EEeeCCCcchhhHHHhhccc--------CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-C
Q 010008          315 IFFKKDPVLGVELESAINNA--------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-G  385 (520)
Q Consensus       315 I~~~~~~~~~~~l~~~i~~~--------~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G  385 (520)
                      ++++++.    .+...+...        ....+.++......+++...|..+...++.+..++..++++++.+.|.+. +
T Consensus       272 l~~r~~~----~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~  347 (431)
T TIGR01788       272 VIWRDEE----ALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGP  347 (431)
T ss_pred             EEEeChH----HcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9998741    121222110        00122333333333445556666656688999999999999999999884 6


Q ss_pred             CEEecCCCCCeeEEEEecCC---CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHH
Q 010008          386 YKLVSGGSDNHLVLVDLRPM---GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIAD  462 (520)
Q Consensus       386 ~~v~~~gt~~~~~~vd~~~~---g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~  462 (520)
                      ++++.+....+++.+.+.+.   +++..++.+.|.+.|+.+.....|...  .....+|+.+...    .+.+-++.+.+
T Consensus       348 ~el~~~~~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~p~~~--~~~~~lR~~~~~~----~~~~~~~~~~~  421 (431)
T TIGR01788       348 FEIISDGSGIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAYTLPKNA--EDIVVMRIVVREG----FSRDLAELLIE  421 (431)
T ss_pred             EEEeeCCCCceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCCCCCcc--CCeEEEEEEecCC----CCHHHHHHHHH
Confidence            88886522334444444321   355677889999999987544333110  1123589876433    34567777777


Q ss_pred             HHHHHHH
Q 010008          463 FIHEGVE  469 (520)
Q Consensus       463 ~i~~~l~  469 (520)
                      .|..++.
T Consensus       422 ~~~~~~~  428 (431)
T TIGR01788       422 DIEAALA  428 (431)
T ss_pred             HHHHHHH
Confidence            7777664

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.88  E-value=2.2e-20  Score=199.32  Aligned_cols=289  Identities=16%  Similarity=0.144  Sum_probs=190.7

Q ss_pred             HHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhh-CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcc
Q 010008          144 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR  221 (520)
Q Consensus       144 a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~al-l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~  221 (520)
                      .++++++++|++.+    ++.+++|+ +++.+++.++ .++||+|+++++.|+++.....    ......|.  +++.++
T Consensus       117 ~~~~la~l~g~~~~----~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~----~~~~~~G~--~~~~v~  186 (447)
T PRK00451        117 YQTMICELTGMDVA----NASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLK----TYLKGQGI--EVVEVP  186 (447)
T ss_pred             HHHHHHHHhCCCcc----eEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHH----HHHHhCCc--EEEEec
Confidence            34678999999875    55556766 7777888887 4899999999987755431110    00111343  666777


Q ss_pred             cCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC-CCCHHHHHHHHHHhCCEEEE--echhhcccccccccCCCCC-ccc
Q 010008          222 LDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMM--DMAHISGLVAASVVADPFK-YCD  297 (520)
Q Consensus       222 ~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~-~~d~~~i~~ia~~~g~~li~--D~Ah~~gli~~~~~~~p~~-~aD  297 (520)
                      +++ + .+|++++++++++ ++++|+++++++.+ ..|+++|+++|+++|+++++  |.. ..|.+     ..+-. ++|
T Consensus       187 ~~~-~-~~d~~~l~~~i~~-~t~~v~l~~pn~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~-----~~~~~~~~D  257 (447)
T PRK00451        187 YED-G-VTDLEALEAAVDD-DTAAVVVQYPNFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SLGLL-----KPPGEYGAD  257 (447)
T ss_pred             CCC-C-CCCHHHHHHhcCC-CeEEEEEECCCCCCeeCCHHHHHHHHHHCCCEEEEEcChH-HhccC-----CCcccCCCC
Confidence            764 4 8999999999987 89999998775433 77999999999999999998  533 33332     12222 689


Q ss_pred             EEEeccCcc-----cCCCCceEEEeeCCCcchhhHHHhhc----------------------------ccCCCCCCCCCh
Q 010008          298 VVTTTTHKS-----LRGPRGGMIFFKKDPVLGVELESAIN----------------------------NAVFPGLQGGPH  344 (520)
Q Consensus       298 iv~~S~hK~-----l~GprgG~I~~~~~~~~~~~l~~~i~----------------------------~~~~p~~~g~p~  344 (520)
                      ++++|.||+     ++||+.|++++++      ++.+.+.                            +.......+++.
T Consensus       258 ~~~~s~~k~~~~~~~~Gpg~G~l~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (447)
T PRK00451        258 IVVGEGQPLGIPLSFGGPYLGFFATRK------KLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQ  331 (447)
T ss_pred             EEEECCCcCCCCCCCCCCCchHHHhhH------HHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccH
Confidence            999999986     6899889999887      3444321                            000000111111


Q ss_pred             HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEE
Q 010008          345 NHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITL  423 (520)
Q Consensus       345 ~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v  423 (520)
                      .....+.+.+++.+...++++..+++.++++++.+.|.+. |+++.. +...+.+.+++.   .+..++.+.|.+.||.+
T Consensus       332 ~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~~~~~~v~~~---~~~~~~~~~L~~~gi~~  407 (447)
T PRK00451        332 ALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVELFD-GPFFNEFVVRLP---KPAEEVNEALLEKGILG  407 (447)
T ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEecC-CCeEEEEEEecC---CCHHHHHHHHHhcCCCC
Confidence            1111122224554545567888899999999999999885 687763 221122234442   35678888898888885


Q ss_pred             cCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          424 NKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       424 ~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      ..   |+.. .+..++.+|++.+.+++    ++|++++++.|++++
T Consensus       408 ~~---~~~~~~~~~~~~~rvs~~~~~t----~e~i~~l~~~L~~~~  446 (447)
T PRK00451        408 GY---DLGRYYPELGNHLLVCVTEKRT----KEDIDALVAALGEVL  446 (447)
T ss_pred             Cc---ccccccCCcCCEEEEecCCCCC----HHHHHHHHHHHHHHh
Confidence            42   2222 11124689999876665    799999999998653

>PRK07908 hypothetical protein; Provisional

Probab=99.88  E-value=2.3e-20  Score=192.67  Aligned_cols=314  Identities=16%  Similarity=0.174  Sum_probs=207.5

Q ss_pred             hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-
Q 010008           93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-  169 (520)
Q Consensus        93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-  169 (520)
                      .+.++|..++|+  +|+.+++++...+.+.  .+||..   .|   ...+    ++.+++.+|++++    +|.+++|+ 
T Consensus        22 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~~~---~g---~~~l----r~aia~~~~~~~~----~I~it~Ga~   85 (349)
T PRK07908         22 PGLLDFAVNVRHDTPPEWLRERLAARLGDL--AAYPST---ED---ERRA----RAAVAARHGRTPD----EVLLLAGAA   85 (349)
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHhhHh--hcCCCc---cc---hHHH----HHHHHHHhCcChh----hEEECCCHH
Confidence            367889888874  6888999998776432  234431   12   2233    3667778899876    56678888 


Q ss_pred             HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 010008          170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  249 (520)
Q Consensus       170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~  249 (520)
                      +|+..++.  ++|| .+++..|.+....        ..+...|.  +++.++++. ++.+|.+.+    ++ ++|+++++
T Consensus        86 ~al~~~~~--l~~~-~viv~~P~y~~~~--------~~~~~~G~--~i~~v~~~~-~~~~d~~~l----~~-~~~~i~l~  146 (349)
T PRK07908         86 EGFALLAR--LRPR-RAAVVHPSFTEPE--------AALRAAGI--PVHRVVLDP-PFRLDPAAV----PD-DADLVVIG  146 (349)
T ss_pred             HHHHHHHh--cCCC-eEEEeCCCChHHH--------HHHHHcCC--EEEeeccCc-ccCcChhHh----cc-CCCEEEEc
Confidence            88887776  5775 4556777664432        12334555  677777764 377888855    33 78999999


Q ss_pred             CCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCC--Cccc-EEEeccCccc--CCCCceEEEeeCCCc
Q 010008          250 ASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF--KYCD-VVTTTTHKSL--RGPRGGMIFFKKDPV  322 (520)
Q Consensus       250 ~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~--~~aD-iv~~S~hK~l--~GprgG~I~~~~~~~  322 (520)
                      +++||+  .++.++|.++|++ +.++|+|+++. .++. +..++..  ...+ +++.|+||++  +|+|.||++.++   
T Consensus       147 np~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y~-~~~~-~~~~~l~~~~~~~~i~i~S~SK~~~l~GlRiG~~~~~~---  220 (349)
T PRK07908        147 NPTNPTSVLHPAEQLLALRRP-GRILVVDEAFA-DAVP-GEPESLAGDDLPGVLVLRSLTKTWSLAGLRVGYALGAP---  220 (349)
T ss_pred             CCCCCCCCCcCHHHHHHHHhc-CCEEEEECcch-hhcc-CCccccccccCCCEEEEeecccccCCccceeeeeecCH---
Confidence            999997  7889999999964 88999999854 3332 2111111  1223 6677999975  789999999887   


Q ss_pred             chhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEe
Q 010008          323 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDL  402 (520)
Q Consensus       323 ~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~  402 (520)
                         ++.+.+.........+   ....+++...++......+++..+++.++++.+.+.|.+.|+++..+ ....++|+++
T Consensus       221 ---~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p-~~g~~~~~~~  293 (349)
T PRK07908        221 ---DVLARLTRGRAHWPVG---TLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAVGARVVDP-AAAPFVLVRV  293 (349)
T ss_pred             ---HHHHHHHhcCCCCCcc---HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhCCcEeccC-CCceEEEEEC
Confidence               6777665543222122   22333332222211112335667778888889999998888877653 2356678776


Q ss_pred             cCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          403 RPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       403 ~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      .    +.+++.+.|+++||.+.    ||+. +...+++|||++.       +++|++++.+.|++++.
T Consensus       294 ~----~~~~~~~~l~~~gI~v~----~g~~f~~~~~~~vRis~~-------~~~~~~~l~~al~~~~~  346 (349)
T PRK07908        294 P----DAELLRKRLRERGIAVR----RGDTFPGLDPDYLRLAVR-------PRAEVPVLVQALAEILK  346 (349)
T ss_pred             C----cHHHHHHHHHhCCEEEE----ECCCCCCCCCCeEEEEeC-------CCccHHHHHHHHHHHHh
Confidence            4    25778889999999995    4433 1223679999973       36899999999988764

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.88  E-value=3.6e-20  Score=194.46  Aligned_cols=336  Identities=18%  Similarity=0.133  Sum_probs=210.4

Q ss_pred             cceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceeeecCChH-
Q 010008           95 SLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSGS-  169 (520)
Q Consensus        95 ~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V~~~sGs-  169 (520)
                      .++|..+..  +.++.+.+++...+.+....   ..+ |+.......+++...+++.+.++.  +++    +|.+++|+ 
T Consensus        35 ~~~l~~g~p~~~~~~~v~~a~~~~~~~~~~~---~~~-y~~~~g~~~lr~~ia~~l~~~~~~~~~~~----~i~~t~G~~  106 (394)
T PRK06836         35 VFDFSLGNPSVPPPAAVKEALRELAEEEDPG---LHG-YMPNAGYPEVREAIAESLNRRFGTPLTAD----HIVMTCGAA  106 (394)
T ss_pred             eEEecCcCCCCCCCHHHHHHHHHHHhcCCcC---ccc-CCCCCCCHHHHHHHHHHHHHHhCCCCCcC----cEEEeCChH
Confidence            467755443  35688999988766532110   011 222222345554455566655544  454    55667777 


Q ss_pred             HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 010008          170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  249 (520)
Q Consensus       170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~  249 (520)
                      +++..++.++++|||.|++++|.+.++..        .....|.  +++.++++++++.+|++++++++++ ++++|+++
T Consensus       107 ~al~~~~~~l~~~gd~Vli~~p~~~~~~~--------~~~~~g~--~v~~v~~~~~~~~~d~~~l~~~~~~-~~~~v~~~  175 (394)
T PRK06836        107 GALNVALKAILNPGDEVIVFAPYFVEYRF--------YVDNHGG--KLVVVPTDTDTFQPDLDALEAAITP-KTKAVIIN  175 (394)
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCCCccHHH--------HHHHcCC--EEEEEecCCccCcCCHHHHHhhcCc-CceEEEEe
Confidence            89999999999999999999987765421        1233454  6677777765678999999999977 89999998


Q ss_pred             CCCCCC--CCC---HHHHHHHHHH------hCCEEEEechhhccccccccc-CCCCC--cccEEEeccCccc--CCCCce
Q 010008          250 ASAYPR--DFD---YPRMRQIADA------VGALLMMDMAHISGLVAASVV-ADPFK--YCDVVTTTTHKSL--RGPRGG  313 (520)
Q Consensus       250 ~s~~p~--~~d---~~~i~~ia~~------~g~~li~D~Ah~~gli~~~~~-~~p~~--~aDiv~~S~hK~l--~GprgG  313 (520)
                      .++||+  ..+   +++|.++|++      ||+++++|++ |..+...+.. +..+.  ...++++|++|.+  +|.|.|
T Consensus       176 ~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~-y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRiG  254 (394)
T PRK06836        176 SPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEP-YREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPGERIG  254 (394)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-ccccccCCCCCCChHHccCcEEEEecchhhccCcceeeE
Confidence            889987  444   6677778888      8999999998 4455543311 11111  2348889999987  578899


Q ss_pred             EEEeeCCCcchhhHHHhhcccC-CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCC
Q 010008          314 MIFFKKDPVLGVELESAINNAV-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG  392 (520)
Q Consensus       314 ~I~~~~~~~~~~~l~~~i~~~~-~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~g  392 (520)
                      |++++++......+...+.... ..+....+.. ...+++..+.    ..  ...+.+.++++.+.+.|.+.|+.+..+.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~q~~~~~~l~----~~--~~~~~~~~~r~~l~~~L~~~g~~~~~~~  327 (394)
T PRK06836        255 YIAVNPEMEDADDLVAALVFANRILGFVNAPAL-MQRVVAKCLD----AT--VDVSIYKRNRDLLYDGLTELGFECVKPQ  327 (394)
T ss_pred             EEecCHHHhhhHHHHHHHHHHhhccccccCCHH-HHHHHHHHhC----Ch--HHHHHHHHHHHHHHHHHHhCCCEeecCC
Confidence            9999863100000111111100 0011122222 2222222222    11  1245566778888899988888766542


Q ss_pred             CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          393 SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       393 t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                       .+.++|+.+..  .+..++.+.|.+.||.+.    ||... ..++++||++.      .+++++++..+.|.++++..
T Consensus       328 -gg~~~~~~~~~--~~~~~~~~~l~~~gv~v~----~g~~f-~~~~~iRi~~~------~~~~~~~~~i~~l~~~l~~~  392 (394)
T PRK06836        328 -GAFYLFPKSPE--EDDVAFCEKAKKHNLLLV----PGSGF-GCPGYFRLSYC------VDTETIERSLPAFEKLAKEY  392 (394)
T ss_pred             -ceEEEEEeCCC--CCHHHHHHHHHhCCEEEE----Cchhc-CCCCeEEEEec------CCHHHHHHHHHHHHHHHHHh
Confidence             34556666542  366777788899999994    44321 13578999874      24789999999998887643

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.88  E-value=9.9e-21  Score=195.86  Aligned_cols=333  Identities=13%  Similarity=0.078  Sum_probs=220.7

Q ss_pred             cceEecCCCCChHHHHHHHhhhhhccCCC--CCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHH
Q 010008           95 SLELIASENFTSRAVMEAVGSCLTNKYSE--GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN  172 (520)
Q Consensus        95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~--G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~  172 (520)
                      .+.++++...+|+.|++||...+.+..+.  |.+.. .....++.+.++ .++++++++||.+.+ +.+-+...||+.|+
T Consensus         4 ~~l~~pGP~~~p~~V~~a~~~~~~~~~~~~~g~~~~-~hr~~~f~~~~~-~~~~~l~~l~~~~~~-~~v~~~~gsgt~~~   80 (360)
T PRK05355          4 VYNFSAGPAMLPEEVLEQAQQELLDWNGSGMSVMEI-SHRSKEFEAVAE-EAEADLRELLNIPDN-YKVLFLQGGASLQF   80 (360)
T ss_pred             eeeccCCCCCCCHHHHHHHHHHhhccccCCcccccc-CCCCHHHHHHHH-HHHHHHHHHhCCCCC-cEEEEEcCCchHHH
Confidence            35678889999999999999876432111  21111 123445555555 577899999998432 22445556777999


Q ss_pred             HHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHH-HhhhcCCcEEEEcCC
Q 010008          173 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEK-TAILFRPKLIIAGAS  251 (520)
Q Consensus       173 ~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~-~i~~~~pklIi~~~s  251 (520)
                      .+++..++.+||++++.....   +.|.+.   ......|.. .  .+..++..+..+..++++ .+++ ++++|.+.+.
T Consensus        81 Ea~~~nl~~~g~~~l~i~~G~---fg~r~~---~~a~~~g~~-~--~~~~~~~~g~~~~~~~~~~~l~~-~~~~V~~th~  150 (360)
T PRK05355         81 AMVPMNLLGGGKKADYVDTGS---WSKKAI---KEAKKYGEV-N--VAASSEDDGFTYIPPLDEWQLSD-DAAYVHYTSN  150 (360)
T ss_pred             HHHHHhcCCCCCeEEEEECCH---HHHHHH---HHHHHhCCc-e--EEecccccCCCCCCChhhccCCC-CCCEEEEccC
Confidence            999999999999999887433   333321   122233431 2  222332234555555544 6666 7999988865


Q ss_pred             CCCC--CC-CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhH
Q 010008          252 AYPR--DF-DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL  327 (520)
Q Consensus       252 ~~p~--~~-d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l  327 (520)
                      .+++  .. |+++|      +|+++++|+++++|....++     ...|++++|.||+| ||.| |+++.+++      .
T Consensus       151 eTstGv~~~~i~~i------~g~l~vVDavss~g~~~idv-----~~~d~~~~ssqK~l-gP~Glg~l~~s~~------~  212 (360)
T PRK05355        151 ETIDGTEFHELPDT------GDVPLVADMSSDILSRPIDV-----SKFGLIYAGAQKNI-GPAGLTIVIVRED------L  212 (360)
T ss_pred             CCcceEecCccccc------CCCcEEEEcCccccCccCCH-----HHccEEEEeccccc-cCCceEEEEECHH------H
Confidence            5544  44 55555      89999999999888764332     23579999999987 6998 99999883      3


Q ss_pred             HHhhccc-----------CCCCCCCCChHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHCCCE-EecC-CC
Q 010008          328 ESAINNA-----------VFPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELGYK-LVSG-GS  393 (520)
Q Consensus       328 ~~~i~~~-----------~~p~~~g~p~~~~iaala~al~~~~~~-~~~~~~~~i~~na~~l~~~L~~~G~~-v~~~-gt  393 (520)
                      .+++...           ......++|+.+.+.++..||+.+... +++...++..+.++++.+.|++.|+. .+.. ..
T Consensus       213 l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~  292 (360)
T PRK05355        213 LGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPED  292 (360)
T ss_pred             HhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhh
Confidence            3333221           001124899999999999999998877 78999999999999999999997752 2221 11


Q ss_pred             CC-eeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          394 DN-HLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       394 ~~-~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      .+ ..+.+.+. .+....++...+.+.||.+.    ++..   ..+.+|+|...+++    .+|++++.++|++++.+
T Consensus       293 rs~~v~sf~~~-~~~~~~~~~~~~~~~Gi~~~----~~~~---~~g~vRiS~~~~nt----~eei~~l~~~l~~~~~~  358 (360)
T PRK05355        293 RSRMNVPFTLA-DEELDKKFLAEAKAAGLVGL----KGHR---SVGGMRASIYNAMP----LEGVQALVDFMKEFERR  358 (360)
T ss_pred             cCCcEEEEEcC-ChHHHHHHHHHHHHCCCccc----CCCC---ccCcEEEECCCCCC----HHHHHHHHHHHHHHHHh
Confidence            12 22333332 22222455567778999972    2321   24689999876665    89999999999997753

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.88  E-value=1.8e-20  Score=194.13  Aligned_cols=312  Identities=14%  Similarity=0.109  Sum_probs=194.2

Q ss_pred             ccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC---CCCCceeeecCCh
Q 010008           94 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD---ENKWGVNVQPLSG  168 (520)
Q Consensus        94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~---~~~~~~~V~~~sG  168 (520)
                      ..|+|..+++  ++++.+.+++.....   ..+|+..   .|   ..++++...+++.+.+|.+   ++    +|.+++|
T Consensus        22 ~~i~l~~~~p~~~~~~~~~~~~~~~~~---~~~Y~~~---~G---~~~lr~~ia~~~~~~~~~~~~~~~----~I~it~G   88 (357)
T TIGR03539        22 GIVDLSVGTPVDPVPPLIRAALAAAAD---APGYPQT---WG---TPELREAIVDWLERRRGVPGLDPT----AVLPVIG   88 (357)
T ss_pred             CeEEccCCCCCCCCCHHHHHHHHHHHh---hCCCCcc---cC---CHHHHHHHHHHHHHhcCCCCCCcC----eEEEccC
Confidence            4577776553  457888888865432   1234431   12   2345555557777776654   44    6777998


Q ss_pred             H-HHHHHHHHhh-CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEE
Q 010008          169 S-PANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       169 s-~A~~~~l~al-l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklI  246 (520)
                      + +++..++.++ ++|||.|++++|.|.++..        .+...|.  +++.++        |++.+.    ..++++|
T Consensus        89 ~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~v~--------~~~~l~----~~~~~~v  146 (357)
T TIGR03539        89 TKELVAWLPTLLGLGPGDTVVIPELAYPTYEV--------GALLAGA--TPVAAD--------DPTELD----PVGPDLI  146 (357)
T ss_pred             hHHHHHHHHHHHcCCCCCEEEECCCCcHHHHH--------HHHhcCC--EEeccC--------ChhhcC----ccCccEE
Confidence            7 8888888887 7999999999998754421        2233454  444432        223222    2378999


Q ss_pred             EEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--------cccEEEeccCccc--CCCC
Q 010008          247 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--------YCDVVTTTTHKSL--RGPR  311 (520)
Q Consensus       247 i~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--------~aDiv~~S~hK~l--~Gpr  311 (520)
                      +++.++||+  ..+   +++|.++|+++|+++|+|+++. .+.+.+.....+.        .-.+++.|++|.+  +|+|
T Consensus       147 ~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R  225 (357)
T TIGR03539       147 WLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYL-ELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYR  225 (357)
T ss_pred             EEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchh-hhccCCCCccceecccCCCccccEEEEeccccccCCCcee
Confidence            999899987  444   6678899999999999999953 4433221111111        1127889999984  8999


Q ss_pred             ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecC
Q 010008          312 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG  391 (520)
Q Consensus       312 gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~  391 (520)
                      +||+++++      ++.+++.+.......+.+.. ...++..++..  ....+...+++.++++.+.+.|.+.|+.+..+
T Consensus       226 ~G~~i~~~------~~~~~~~~~~~~~~~~~~~~-~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~p  296 (357)
T TIGR03539       226 AGFVAGDP------ALVAELLTVRKHAGLMVPAP-VQAAMVAALGD--DGHVAEQKARYAARRAQLKPALEKAGFRIDHS  296 (357)
T ss_pred             EEEEecCH------HHHHHHHHHHhhcccCCCHH-HHHHHHHHcCC--HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence            99999876      66666544322222222222 22333333421  12235556777788888999998888776544


Q ss_pred             CCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHH
Q 010008          392 GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  464 (520)
Q Consensus       392 gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i  464 (520)
                       ..+.++|+++.   .+..++.+.|.++||.+.    ||+. +....+++||++..      +++++++..+.|
T Consensus       297 -~~~~~~~~~~~---~~~~~~~~~l~~~gV~v~----pg~~f~~~~~~~iRis~~~------~~~~i~~~~~~l  356 (357)
T TIGR03539       297 -EAGLYLWATRG---EDAWDTVDRLAELGILVA----PGDFYGPAGSQHVRVALTA------TDERIAAAVARL  356 (357)
T ss_pred             -CccEEEEEECC---CCHHHHHHHHHhCCEEEC----CccccCCCCCCeEEEEecC------CHHHHHHHHHhh
Confidence             23455666553   245677788999999994    4432 12235789999742      357777666544

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.88  E-value=8.1e-21  Score=196.51  Aligned_cols=275  Identities=20%  Similarity=0.190  Sum_probs=186.1

Q ss_pred             HHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCC-CEEEEcCCCCCccccccccccccccccccceEEEEEcccC
Q 010008          146 KRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD  223 (520)
Q Consensus       146 ~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d  223 (520)
                      +.+++.+|++++    +|.+++|+ +++..++.++++|| |+|++++|.|..+.        ......|.  +++.++++
T Consensus        67 ~aia~~~~~~~~----~I~it~Gs~~~i~~~~~~~~~~g~d~vlv~~P~y~~y~--------~~~~~~g~--~v~~v~~~  132 (354)
T PRK04635         67 NAYSAYAGVAPE----QILTSRGADEAIELLIRAFCEPGQDSIACFGPTYGMYA--------ISAETFNV--GVKALPLT  132 (354)
T ss_pred             HHHHHHhCcCHH----HEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHH--------HHHHHcCC--EEEEEecC
Confidence            566778899986    66779998 89999999999999 99999998765321        12234455  66666675


Q ss_pred             CCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHh-CCEEEEechhhcccccccccCCCCC-ccc-E
Q 010008          224 ESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAV-GALLMMDMAHISGLVAASVVADPFK-YCD-V  298 (520)
Q Consensus       224 ~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~-g~~li~D~Ah~~gli~~~~~~~p~~-~aD-i  298 (520)
                       +++.+|.+.+++ + + ++|+|++++|+||+  ..+.+++.++++.. +++||+|+++. .+........... +.. +
T Consensus       133 -~~~~~~~~~l~~-~-~-~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~-~~~~~~s~~~~~~~~~~~i  207 (354)
T PRK04635        133 -ADYQLPLDYIEQ-L-D-GAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYI-EFCPEYSVADLLASYPNLV  207 (354)
T ss_pred             -CCCCCCHHHHHh-c-c-CCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchH-hhccCcchHHHHhhCCCEE
Confidence             357899998873 3 4 89999999999997  78999999998874 79999999953 3321110000001 112 6


Q ss_pred             EEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q 010008          299 VTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA  376 (520)
Q Consensus       299 v~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~  376 (520)
                      ++.|+||++  +|.|.||+++++      ++.+.+.....+.  +.+...+.+++ .+|........++..+++.++++.
T Consensus       208 v~~S~SK~~~l~GlRlG~~i~~~------~~~~~l~~~~~~~--~~~~~~~~~a~-~~l~~~~~~~~~~~~~~~~~~r~~  278 (354)
T PRK04635        208 VLRTLSKAFALAGARCGFTLANE------ELIEILMRVIAPY--PVPLPVSEIAT-QALSEAGLARMKFQVLDLNAQGAR  278 (354)
T ss_pred             EEechHHHhhhhHHHHhhhhCCH------HHHHHHHhhcCCC--CCCHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHH
Confidence            789999986  688999999987      6777766543222  22222222222 233221011234556677888899


Q ss_pred             HHHHHHHCC-CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHH
Q 010008          377 LASRLVELG-YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK  455 (520)
Q Consensus       377 l~~~L~~~G-~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~  455 (520)
                      +.+.|.+.+ +.+..++  ..++|+++.    +..++.+.|+++||.+...    +. ...++++||++.       +++
T Consensus       279 l~~~L~~~~~~~~~~~~--g~f~~~~~~----~~~~~~~~l~~~gv~v~~~----~~-~~~~~~lRis~~-------~~e  340 (354)
T PRK04635        279 LQAALSMYGGAKVLEGN--GNYVLAKFD----DVDAVFKALWDAGIVARAY----KD-PRLANCIRFSFS-------NRA  340 (354)
T ss_pred             HHHHHHhCCCceECCCC--CcEEEEECC----CHHHHHHHHHHCCEEEEEC----CC-CCCCCeEEEEeC-------CHH
Confidence            999998865 7765442  346677664    4567888899999999642    11 123568999853       379


Q ss_pred             HHHHHHHHHHH
Q 010008          456 EFVAIADFIHE  466 (520)
Q Consensus       456 d~~~la~~i~~  466 (520)
                      |++++.+++++
T Consensus       341 ~~~~l~~al~~  351 (354)
T PRK04635        341 ETDKLIGLIRN  351 (354)
T ss_pred             HHHHHHHHHHH
Confidence            99999998865

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.88  E-value=6.8e-20  Score=193.13  Aligned_cols=328  Identities=18%  Similarity=0.184  Sum_probs=210.1

Q ss_pred             ecCCCCC----hHHHHHHHhhhhhccCCCCCCCCCCCCc-chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHH
Q 010008           99 IASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  173 (520)
Q Consensus        99 iasen~~----~~~V~ea~~s~l~~~y~~G~p~~ryy~g-~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~  173 (520)
                      ..|.+|.    .|.|++++...+. +|..|..+.|...| .+...++|    +++++++|.+.     .+..+||++||.
T Consensus        50 ~~sn~ylgl~~~p~v~~a~~~~~~-~~~~~~~~s~~~~~~~~~~~~le----~~la~~~g~~~-----~~~~~SG~~An~  119 (406)
T PRK13393         50 WCSNDYLGMGQHPAVLAAMHEALD-TCGAGAGGTRNISGTNHYHVLLE----AELADLHGKEA-----ALLFTSGYVSNW  119 (406)
T ss_pred             eecccccCCCCCHHHHHHHHHHHH-HcCCCCcccccccCChHHHHHHH----HHHHHHhCCCc-----EEEeCCcHHHHH
Confidence            3455653    6889999988775 45444444443323 33445555    78889999754     356689999999


Q ss_pred             HHHHhhCC--CCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh---cCCcEEEE
Q 010008          174 EVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLIIA  248 (520)
Q Consensus       174 ~~l~all~--pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~---~~pklIi~  248 (520)
                      .++.++.+  +||.|+.....|+..+.        .+...|.  +...++.      .|++++++.++.   .++++|++
T Consensus       120 ~ai~~l~~~~~g~~I~~~~~~H~s~~~--------~~~~~g~--~~~~~~~------~d~~~l~~~l~~~~~~~~~~v~~  183 (406)
T PRK13393        120 AALSTLGSRLPGCVILSDELNHASMIE--------GIRHSRA--EKRIFRH------NDPADLERKLSDLDPHRPKLVAF  183 (406)
T ss_pred             HHHHHhhcCCCCCEEEEccchhHHHHH--------HHHHcCC--eEEEeCC------CCHHHHHHHHHhccCCCCEEEEE
Confidence            99988765  78877776666654331        1223343  3333332      377777777653   25678888


Q ss_pred             cCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccc-c--cc--CCCCCcccEEEeccCcccCCCCceEEEeeCCC
Q 010008          249 GASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAA-S--VV--ADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDP  321 (520)
Q Consensus       249 ~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~-~--~~--~~p~~~aDiv~~S~hK~l~GprgG~I~~~~~~  321 (520)
                      +.+++++  ..|+++|.++|+++|+++++|++|..|+... |  ..  ....+..|+++.|++|.+++ .||++++++  
T Consensus       184 ~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~-~GG~~~~~~--  260 (406)
T PRK13393        184 ESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGV-MGGYITGSA--  260 (406)
T ss_pred             cCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcc-cCceeeCCH--
Confidence            7665543  7899999999999999999999998786421 1  11  11112358888999999854 569998876  


Q ss_pred             cchhhHHHhhcccCCCC-CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEE
Q 010008          322 VLGVELESAINNAVFPG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV  400 (520)
Q Consensus       322 ~~~~~l~~~i~~~~~p~-~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~v  400 (520)
                          ++.+.+.....+. ..++.+....++...+|+.+....  ...++..++++++.+.|.+.|++++.+  ...++.+
T Consensus       261 ----~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~--~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~i~~v  332 (406)
T PRK13393        261 ----ALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASS--AERERHQDRVARLRARLDKAGIPHLPN--PSHIVPV  332 (406)
T ss_pred             ----HHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCH--HHHHHHHHHHHHHHHHHHHcCCCcCCC--CCCeEEE
Confidence                5655554332222 123334444455555777654322  234566788889999998888876643  2344444


Q ss_pred             EecCCCCCHHHHHHHHhh-cCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          401 DLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       401 d~~~~g~~~~~~~~~L~~-~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      .+.. ..+...+.+.|.+ .||.++....|..  +.+.+.|||+.+...    +++|++++++.|.+++..
T Consensus       333 ~~~~-~~~~~~l~~~L~~~~Gi~v~~~~~p~~--p~g~~~iRis~~~~~----t~edid~l~~~l~~~~~~  396 (406)
T PRK13393        333 MVGD-PVLCKQISDELLDRYGIYVQPINYPTV--PRGTERLRITPSPLH----TDADIEHLVQALSEIWAR  396 (406)
T ss_pred             EeCC-HHHHHHHHHHHHHhCCEEEEeECCCCC--CCCCceEEEEECCCC----CHHHHHHHHHHHHHHHHh
Confidence            3321 1123556666655 7999976433321  223468999987654    489999999999988754

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.87  E-value=1.7e-20  Score=195.76  Aligned_cols=327  Identities=15%  Similarity=0.103  Sum_probs=209.9

Q ss_pred             cceEecCCCCChHH-HHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHH
Q 010008           95 SLELIASENFTSRA-VMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  173 (520)
Q Consensus        95 ~i~Liasen~~~~~-V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~  173 (520)
                      .+.|+++...+++. |++++...+...      .   ..+.++.+.++ .+++.++++||++.+ ..+-+...|||.++.
T Consensus        13 ~~~f~~Gp~~~~~~~v~~a~~~~~~~~------~---hr~~~f~~~~~-~~r~~l~~l~~~~~~-~~v~~~~gs~T~~~~   81 (378)
T PRK03080         13 DPRFSSGPCKKRPGWQLEALADALLGR------S---HRQKPVKALLK-RVIEGTRELLSLPEG-YEVGIVPGSDTGAWE   81 (378)
T ss_pred             CCCcCCCCcCCChHHHHHHHHhhhccc------C---cCCHHHHHHHH-HHHHHHHHHhCCCCC-ceEEEECCchHHHHH
Confidence            46678887777777 999998543211      1   11235555555 688999999998532 112222347889999


Q ss_pred             HHHHhhCCC-CCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 010008          174 EVYTAILKP-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA  252 (520)
Q Consensus       174 ~~l~all~p-GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~  252 (520)
                      +++.+++++ ++.|+. +-.|+..+    ...  .....|. .++..++.+ .++.+|+++++    .  +|+|.+++..
T Consensus        82 ~~~~~l~~~~~~~vi~-~g~f~~~~----~~~--~~~~~g~-~~v~~~~~~-~g~~~d~~~i~----~--~~~V~~~h~~  146 (378)
T PRK03080         82 MALWSLLGARRVDHLA-WESFGSKW----ATD--VVKQLKL-EDPRVLEAD-YGSLPDLSAVD----F--DRDVVFTWNG  146 (378)
T ss_pred             HHHHhcCCCCcceEEE-eCHHHHHH----HHH--HHhhcCC-CCceEeccC-CCCCCCHhhcC----C--CCCEEEEecC
Confidence            999999875 455554 44444321    100  0012233 033333333 34678877743    2  5667666444


Q ss_pred             C--CCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHH
Q 010008          253 Y--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES  329 (520)
Q Consensus       253 ~--p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~  329 (520)
                      +  +...|+++|++  +++|+++++|++|+.|.+..++.     .+|++++|.||||.||.| |+++.+++      ..+
T Consensus       147 t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pidv~-----~iD~~~~s~~K~l~~P~G~g~l~v~~~------~~~  213 (378)
T PRK03080        147 TTTGVRVPVARWIG--ADREGLTICDATSAAFALPLDWS-----KLDVYTFSWQKVLGGEGGHGMAILSPR------AVE  213 (378)
T ss_pred             Cccceeccchhhcc--ccCCCeEEEecccccccCCCCHH-----HCcEEEEehhhhCCCCCceEEEEECHH------HHH
Confidence            3  34889999999  88999999999999987754432     379999999999999988 99999873      333


Q ss_pred             hhccc---------------------CC-CCCCCCChHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHCC-
Q 010008          330 AINNA---------------------VF-PGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELG-  385 (520)
Q Consensus       330 ~i~~~---------------------~~-p~~~g~p~~~~iaala~al~~~~~~-~~~~~~~~i~~na~~l~~~L~~~G-  385 (520)
                      ++...                     .+ .+..++|+...+.++..+|+.+.+. +.+...++..+.++++.+.|.+.+ 
T Consensus       214 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~  293 (378)
T PRK03080        214 RLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPW  293 (378)
T ss_pred             hhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            22210                     01 1233567777888888899988876 678888888999999999998865 


Q ss_pred             CEEecC-C-CCC-eeEEEEecCC--CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHH
Q 010008          386 YKLVSG-G-SDN-HLVLVDLRPM--GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAI  460 (520)
Q Consensus       386 ~~v~~~-g-t~~-~~~~vd~~~~--g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~l  460 (520)
                      +.++.. . ..+ .++.+.+...  +.+.+ +...|.+.||.+..+..    .. ..+++|+|...+++    ++|++++
T Consensus       294 ~~~~~~~~~~~s~~i~~~~~~~~~~~~~~~-~~~~l~~~~i~v~~g~~----~~-~~~~vRis~~~~~t----~~di~~l  363 (378)
T PRK03080        294 ATPLVADPATRSNTSVTLDFVDAQAAVDAA-AVAKLLRENGAVDIEPY----RD-APNGLRIWCGPTVE----PADVEAL  363 (378)
T ss_pred             cccccCCccccCccEEEEEcCCchHHHHHH-HHHHHHHcCCeeccccc----cC-CCCcEEEecCCCCC----HHHHHHH
Confidence            566532 1 112 2333333320  12333 44445566888754211    11 24689999887765    8999999


Q ss_pred             HHHHHHHHHH
Q 010008          461 ADFIHEGVEI  470 (520)
Q Consensus       461 a~~i~~~l~~  470 (520)
                      +++|++++..
T Consensus       364 ~~al~~~~~~  373 (378)
T PRK03080        364 TPWLDWAFER  373 (378)
T ss_pred             HHHHHHHHHH
Confidence            9999987664

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.87  E-value=6e-20  Score=207.43  Aligned_cols=297  Identities=21%  Similarity=0.199  Sum_probs=207.2

Q ss_pred             HHHHHHHHHcCCCCCCCceeeecCChH---HHHHHHHHhhCCC-CC----EEEEcCCCCCccccccccccccccccccce
Q 010008          143 LCQKRALAAFNLDENKWGVNVQPLSGS---PANFEVYTAILKP-HD----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIY  214 (520)
Q Consensus       143 ~a~~~~~~lfg~~~~~~~~~V~~~sGs---~A~~~~l~all~p-GD----~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~  214 (520)
                      .+++++++++|.+.    +.+++.+|+   .|+..++.+++++ ||    +|++++.+|+.....        ..+.|. 
T Consensus       572 ~~r~~la~i~g~~~----v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~--------a~~~G~-  638 (993)
T PLN02414        572 DLGDLLCEITGFDS----FSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPAS--------AAMCGM-  638 (993)
T ss_pred             HHHHHHHHHhCCCe----EEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHH--------HHHCCC-
Confidence            57799999999954    578888886   4888888999876 98    899999888766432        223454 


Q ss_pred             EEEEEcccCCCCCCCCHHHHHHHhhhc--CCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          215 FESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       215 ~~~v~~~~d~~~~~iD~d~le~~i~~~--~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                       +++.++.| +++.+|+++|+++++++  ++++|++.+++|-+  ..|+++|+++|+++|+++++|+||..++...   .
T Consensus       639 -~vv~v~~d-~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l---~  713 (993)
T PLN02414        639 -KIVVVGTD-AKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGL---T  713 (993)
T ss_pred             -EEEEeccC-CCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCc---C
Confidence             66677676 57899999999999852  57888888766554  5679999999999999999999998776422   2


Q ss_pred             CCCC-cccEEEeccCcccCCCCc------eEEEeeCCCcchhhHHHhhccc----------CC-CCCCCC----ChHHHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPRG------GMIFFKKDPVLGVELESAINNA----------VF-PGLQGG----PHNHTI  348 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gprg------G~I~~~~~~~~~~~l~~~i~~~----------~~-p~~~g~----p~~~~i  348 (520)
                      .|.. ++|++++|.||||.||.|      |++.+++.      +...+-..          .+ +...|+    +..+..
T Consensus       714 ~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~------L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al  787 (993)
T PLN02414        714 SPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH------LAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSAL  787 (993)
T ss_pred             CccccCCCEEEecCCccCCcCcccCCCCeeeEEEchh------hcccCCCCccccCCCcccccCCCCcCCccchhhhhHH
Confidence            3333 799999999999876653      88888773      32222110          00 111233    222222


Q ss_pred             HH-HHHH-HHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCC---CCCeeEEEEecC----CCCCHHHHHHHHhhc
Q 010008          349 GG-LAVC-LKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG---SDNHLVLVDLRP----MGIDGARVEKILDMA  419 (520)
Q Consensus       349 aa-la~a-l~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~g---t~~~~~~vd~~~----~g~~~~~~~~~L~~~  419 (520)
                      .+ .+.+ +..+..+++++..++...|+.++++.|.+ ++.+...+   ..-|-+.++++.    .+++..++.+.|.+.
T Consensus       788 ~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~-~~~~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~d~  866 (993)
T PLN02414        788 ILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEG-HYPVLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLMDY  866 (993)
T ss_pred             HHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHh-hCCccccCCCCCeeeeEEEeccccccccCCCHHHHHHHHHHc
Confidence            22 1222 34444455677789999999999999977 55544322   223445666652    246668888989899


Q ss_pred             CeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHHHHH
Q 010008          420 SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEA  474 (520)
Q Consensus       420 gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~~~~  474 (520)
                      ||..-..++|      .++.+||+.....+    ++|++++++.+..+.....++
T Consensus       867 Gihapt~~~p------v~~~lmiepTE~~s----keelDrf~~al~~i~~e~~~~  911 (993)
T PLN02414        867 GFHAPTMSWP------VPGTLMIEPTESES----KAELDRFCDALISIREEIADI  911 (993)
T ss_pred             CcEEeeeccc------cCCEEEEEeeeeCC----HHHHHHHHHHHHHHHHHHHHH
Confidence            9987432222      36789998776654    899999999998888776554

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.87  E-value=9.5e-21  Score=198.95  Aligned_cols=330  Identities=16%  Similarity=0.183  Sum_probs=198.6

Q ss_pred             hccceEecCC----C-CCh--HHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceee
Q 010008           93 FKSLELIASE----N-FTS--RAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNV  163 (520)
Q Consensus        93 ~~~i~Liase----n-~~~--~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V  163 (520)
                      .+.|+|..+.    + .+|  +.+.+++...+.+....+|+.   ..|.   .++.+...+++.+..+.  +++++  +|
T Consensus        26 ~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~---~~G~---~~lR~aia~~~~~~~~~~~~~~~i--~v   97 (396)
T PRK09257         26 PDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLP---IEGL---AAYRQAVQELLFGADSPALAAGRV--AT   97 (396)
T ss_pred             cCcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCC---CCCC---HHHHHHHHHHhcCCCCcccccCeE--EE
Confidence            3568887652    2 234  678888877654322223432   2232   34554445665544332  45422  34


Q ss_pred             ecCChH-HHHHHHHHhh--CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEccc-CCCCCCCCHHHHHHHhh
Q 010008          164 QPLSGS-PANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEKTAI  239 (520)
Q Consensus       164 ~~~sGs-~A~~~~l~al--l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~-d~~~~~iD~d~le~~i~  239 (520)
                      .+|+|+ +|+.+++.++  ++|||+|++.+|.|.++..        .+...|.  +++.+++ +++++.+|++++++.++
T Consensus        98 ~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~--------~~~~~g~--~~v~v~~~~~~~~~~d~~~l~~~~~  167 (396)
T PRK09257         98 VQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRA--------IFEAAGL--EVKTYPYYDAATKGLDFDAMLADLS  167 (396)
T ss_pred             EecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHH--------HHHHcCC--cEEEEeccccccCccCHHHHHHHHH
Confidence            778988 8998887665  6899999999998866532        3344565  6666666 33457899999999886


Q ss_pred             hcC--CcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccc-cccCCCC---C--c-ccEEEeccCc
Q 010008          240 LFR--PKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAA-SVVADPF---K--Y-CDVVTTTTHK  305 (520)
Q Consensus       240 ~~~--pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~-~~~~~p~---~--~-aDiv~~S~hK  305 (520)
                      ..+  .+++++++++||+  .+   .+++|.++|+++|+++|+|++ |.++.+. +....++   .  + --|++.|++|
T Consensus       168 ~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~-Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK  246 (396)
T PRK09257        168 QAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIA-YQGFGDGLEEDAYGLRAFAAAGLELLVASSFSK  246 (396)
T ss_pred             hCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecc-ccccccchHHHHHHHHHHHhcCCcEEEEEEcCC
Confidence            433  3455668899997  33   467888899999999999998 5555532 1101111   1  1 1277899999


Q ss_pred             cc--CCCCceEEEe--eCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHh-----cCchhHHHHHHHHHHHHH
Q 010008          306 SL--RGPRGGMIFF--KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA-----QSPEFKVYQNKVVSNCRA  376 (520)
Q Consensus       306 ~l--~GprgG~I~~--~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~-----~~~~~~~~~~~i~~na~~  376 (520)
                      ++  +|+|.||+++  .+.. ...++..++.........+ ++.....+++..+..-     .....++..+++.++++.
T Consensus       247 ~~~~~GlRiG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~  324 (396)
T PRK09257        247 NFGLYGERVGALSVVAEDAE-EADRVLSQLKATIRTNYSN-PPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQL  324 (396)
T ss_pred             cCccccccceeEEEEeCCHH-HHHHHHHHHHHHhhhhcCC-CcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87  4999999984  2210 0001222222221111122 2222222222223210     011234567778888999


Q ss_pred             HHHHHHHCC----CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCC
Q 010008          377 LASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGF  452 (520)
Q Consensus       377 l~~~L~~~G----~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~  452 (520)
                      +.+.|++.+    +.+..+ ..+.++|+++     +.+.+.+++++.||.+    +|        .+ ||++..     .
T Consensus       325 l~~~L~~~~~~~~~~~~~p-~gg~~~w~~l-----~~~~~~~l~~~~~V~~----~p--------~~-ri~~~~-----~  380 (396)
T PRK09257        325 LVEALKAKGPSRDFDFIAR-QRGMFSYSGL-----TPEQVDRLREEFGVYA----VG--------SG-RINVAG-----L  380 (396)
T ss_pred             HHHHHHhcCCCCCcccccc-cceEEEecCC-----CHHHHHHHHHcCCEEE----cC--------CC-eEEEee-----C
Confidence            999998864    444333 2245566654     3467788889999988    33        12 998754     3


Q ss_pred             CHHHHHHHHHHHHHH
Q 010008          453 SEKEFVAIADFIHEG  467 (520)
Q Consensus       453 ~~~d~~~la~~i~~~  467 (520)
                      ++++++++++.|+++
T Consensus       381 ~~~~i~~~~~~i~~~  395 (396)
T PRK09257        381 NESNIDYVAEAIAAV  395 (396)
T ss_pred             CHHHHHHHHHHHHhh
Confidence            478999999999875

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.87  E-value=8.1e-20  Score=187.22  Aligned_cols=299  Identities=19%  Similarity=0.177  Sum_probs=196.6

Q ss_pred             hhHHHHHHHHHHHHHHHcCCCCCCCceeeecC-ChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccc
Q 010008          135 EYIDELETLCQKRALAAFNLDENKWGVNVQPL-SGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  213 (520)
Q Consensus       135 ~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~-sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~  213 (520)
                      ...+++++..++++...++.....  .++.++ +|++++..++.++.++||+|+++++.|.++..        .+...|.
T Consensus        36 ~~~~~l~~~l~~~l~~~~~~~~~~--~~~~~~~~~t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~--------~~~~~~~  105 (350)
T cd00609          36 PGLPELREAIAEWLGRRGGVDVPP--EEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEA--------AARLAGA  105 (350)
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCCc--ceEEEecCcHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHCCC
Confidence            335677766667777666632111  133334 45599999999999999999999988766531        2233443


Q ss_pred             eEEEEEcccCCCCCCCCH--HHHHHHhhhcCCcEEEEcCCCCCC--CCCHH---HHHHHHHHhCCEEEEechhhcccccc
Q 010008          214 YFESMPYRLDESTGLVDY--DMLEKTAILFRPKLIIAGASAYPR--DFDYP---RMRQIADAVGALLMMDMAHISGLVAA  286 (520)
Q Consensus       214 ~~~~v~~~~d~~~~~iD~--d~le~~i~~~~pklIi~~~s~~p~--~~d~~---~i~~ia~~~g~~li~D~Ah~~gli~~  286 (520)
                        +++.++++. ++..+.  +.++..+.+ ++++|++..++||+  ..|.+   +|.++|+++|+++++|++|..+. ..
T Consensus       106 --~~~~i~~~~-~~~~~~~~~~~~~~~~~-~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~-~~  180 (350)
T cd00609         106 --EVVPVPLDE-EGGFLLDLELLEAAKTP-KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELV-YD  180 (350)
T ss_pred             --EEEEEeccc-ccCCccCHHHHHhhcCc-cceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhce-eC
Confidence              566666653 344443  666666655 89999998777765  56654   55589999999999999976543 22


Q ss_pred             cccC----CCC-CcccEEEeccCcccC--CCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc
Q 010008          287 SVVA----DPF-KYCDVVTTTTHKSLR--GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ  359 (520)
Q Consensus       287 ~~~~----~p~-~~aDiv~~S~hK~l~--GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~  359 (520)
                      +...    ..- .++|+++.|+||++.  |++.|+++++++     ++.+.+..... ...++++.....++..+++...
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~  254 (350)
T cd00609         181 GEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPE-----ELLERLKKLLP-YTTSGPSTLSQAAAAAALDDGE  254 (350)
T ss_pred             CcccccccCcCccCcEEEEeecccccCCcccceEEEecCHH-----HHHHHHHHHHH-hcccCCChHHHHHHHHHHhCcH
Confidence            2221    111 157899999999984  677799999884     46665544322 2234556666666666666432


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCE
Q 010008          360 SPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGG  439 (520)
Q Consensus       360 ~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~g  439 (520)
                       .+.+...+++.++++++.+.|.+.+...+.......++++.+.. ..+...+.+.|.+.||.+.....+.   +..+.+
T Consensus       255 -~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~l~~~gi~i~~~~~~~---~~~~~~  329 (350)
T cd00609         255 -EHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPE-GDDEEFLERLLLEAGVVVRPGSAFG---EGGEGF  329 (350)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCC-CChHHHHHHHHHhCCEEEecccccc---cCCCCe
Confidence             35677788899999999999988655432222234556666543 2345678889999999996432111   124679


Q ss_pred             EEEccCCccccCCCHHHHHHHHHHHH
Q 010008          440 IRIGSPAMTTRGFSEKEFVAIADFIH  465 (520)
Q Consensus       440 iRig~~~~tt~g~~~~d~~~la~~i~  465 (520)
                      +||+....      .+|+++++++|+
T Consensus       330 iRi~~~~~------~~~i~~~~~al~  349 (350)
T cd00609         330 VRLSFATP------EEELEEALERLA  349 (350)
T ss_pred             EEEEeeCC------HHHHHHHHHHhh
Confidence            99987632      699999998875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.87  E-value=1e-19  Score=191.48  Aligned_cols=332  Identities=15%  Similarity=0.149  Sum_probs=197.2

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      +.|+|..+++.  +++.|.+++...+.+...+  .....|+.......+.+.+.+++.+ .+++++    +|.+++|+ +
T Consensus        34 ~~i~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~Y~p~~g~~~lr~aia~~~~~-~~~~~d----~I~it~Ga~~  106 (402)
T TIGR03542        34 DIIRLGIGDTTQPLPASVIEAFHNAVDELASE--ETFRGYGPEQGYPFLREAIAENDYR-GRIDPE----EIFISDGAKC  106 (402)
T ss_pred             CeEEcCCCCCCCCCCHHHHHHHHHHHhccccc--ccccCCCCCCCCHHHHHHHHHHHHh-cCCCHH----HEEECCCcHH
Confidence            56888877764  6788999998877643111  0001121111123444333333211 157775    66779998 7


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccc---------eEEEEEcccCCC-CCCCCHHHHHHHhhh
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI---------YFESMPYRLDES-TGLVDYDMLEKTAIL  240 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~---------~~~~v~~~~d~~-~~~iD~d~le~~i~~  240 (520)
                      ++.. +.+++.|||+|++++|.|.++..        .....|.         +.++++++++++ ++.+|++.      .
T Consensus       107 al~~-l~~l~~~gd~Vlv~~P~y~~~~~--------~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------~  171 (402)
T TIGR03542       107 DVFR-LQSLFGSDNTVAVQDPVYPAYVD--------SNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPE------E  171 (402)
T ss_pred             HHHH-HHHhcCCCCEEEEeCCCCcchHH--------HHHHcCCccccccccccceEEEeecchhhCCCCCccc------c
Confidence            7775 46677999999999998865532        1122232         115556666533 34455322      1


Q ss_pred             cCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCC---Cc---ccEEEeccCccc--
Q 010008          241 FRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KY---CDVVTTTTHKSL--  307 (520)
Q Consensus       241 ~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~---~~---aDiv~~S~hK~l--  307 (520)
                      .++|+|+++.|+||+  .++   +++|.++|+++|++||+|+++ ..+...+..+.++   +.   .-+++.|++|.+  
T Consensus       172 ~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y-~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~  250 (402)
T TIGR03542       172 PKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAY-SAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGF  250 (402)
T ss_pred             CCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchh-hhhccCCCCCcchhhCCCCcccEEEEecCccccCC
Confidence            278999999999997  555   788889999999999999984 4554433222222   21   126689999976  


Q ss_pred             CCCCceEEEeeCCCcchhhHH--------HhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 010008          308 RGPRGGMIFFKKDPVLGVELE--------SAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALAS  379 (520)
Q Consensus       308 ~GprgG~I~~~~~~~~~~~l~--------~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~  379 (520)
                      +|.|.||+++++      ++.        +.+.........+.+...+.++ ..++..-......+..+.+.++++.+.+
T Consensus       251 pGlRiG~~i~~~------~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~  323 (402)
T TIGR03542       251 TGVRLGWTVVPK------ELTYADGHSVIQDWERRQCTKFNGASYPVQRAA-EAAYAGEGLQPILEAISYYMENARILRK  323 (402)
T ss_pred             CCcceEEEEecH------HHhhcchhhHHHHHHHHhhhcccCCCHHHHHHH-HHHHcCcchhHHHHHHHHHHHHHHHHHH
Confidence            789999999987      443        2221111111112222333332 2233221111234455667788888999


Q ss_pred             HHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHH-HHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHH
Q 010008          380 RLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEK-ILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEF  457 (520)
Q Consensus       380 ~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~-~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~  457 (520)
                      .|.+.|+++..+ ....++|+++.. .++..++.+ ++++.||.+.    ||+. +....+++||+..      .+++++
T Consensus       324 ~L~~~~~~~~~~-~~~~f~~v~l~~-~~~~~~l~~~l~~~~gv~v~----pg~~f~~~~~~~iRis~~------~~~~~l  391 (402)
T TIGR03542       324 ALEAAGFKVYGG-EHAPYLWVKTPE-GISSWDFFDFLLYQYHVVGT----PGSGFGPSGEGFVRFSAF------GKRENI  391 (402)
T ss_pred             HHHhcCceecCC-CceeEEEEECCC-CCCHHHHHHHHHHhCCEEEe----CchhhCCCCCCEEEEEec------CCHHHH
Confidence            998888776543 345677888753 456655555 4567899994    4443 2223578999842      246888


Q ss_pred             HHHHHHHHHH
Q 010008          458 VAIADFIHEG  467 (520)
Q Consensus       458 ~~la~~i~~~  467 (520)
                      ++..+.|.++
T Consensus       392 ~~~l~~l~~~  401 (402)
T TIGR03542       392 VEACERIKEA  401 (402)
T ss_pred             HHHHHHHHhh
Confidence            8888777654

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.87  E-value=4.2e-20  Score=191.91  Aligned_cols=284  Identities=15%  Similarity=0.114  Sum_probs=188.3

Q ss_pred             HHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCC-CEEEEcCCCCCccccccccccccccccccceEEEEEccc
Q 010008          145 QKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL  222 (520)
Q Consensus       145 ~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~  222 (520)
                      ++.+++++|++++    +|.+++|+ +++..++.++++|| |+|++.+|.++.+.        ......|.  +++.+++
T Consensus        65 r~~ia~~~~~~~~----~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~--------~~~~~~g~--~~~~v~~  130 (364)
T PRK04781         65 RSALAALYGCAPE----QLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYA--------VCARLQNA--PLVEVPL  130 (364)
T ss_pred             HHHHHHHhCcChH----HEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHH--------HHHHHcCC--EEEEEec
Confidence            3567778899875    67779997 89999999999999 79999888654221        11233455  6666666


Q ss_pred             CC--CCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHH--hCCEEEEechhhcccccccccCCCCC-c
Q 010008          223 DE--STGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK-Y  295 (520)
Q Consensus       223 d~--~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~--~g~~li~D~Ah~~gli~~~~~~~p~~-~  295 (520)
                      +.  +++.+|++++++.+...++++|++++|+||+  .++.+++.++++.  .++++|+|+++ ..+.........+. +
T Consensus       131 ~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay-~~f~~~~~~~~~~~~~  209 (364)
T PRK04781        131 VDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAY-GEFSDVPSAVGLLARY  209 (364)
T ss_pred             CCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcc-hhhcCCcchHHHHhhC
Confidence            32  2346899998665543489999999999997  7788888888765  38999999984 34432110000011 1


Q ss_pred             cc-EEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010008          296 CD-VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVS  372 (520)
Q Consensus       296 aD-iv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~  372 (520)
                      .. +++.|++|++  +|.|.||+++++      ++.+.+.+...+.  +.....+.++. .+|.........+..+++.+
T Consensus       210 ~~vi~~~SfSK~~gl~GlRvGy~v~~~------~l~~~l~~~~~~~--~~~~~~~~~a~-~~l~~~~~~~~~~~~~~~~~  280 (364)
T PRK04781        210 DNLAVLRTLSKAHALAAARIGSLIANA------ELIAVLRRCQAPY--PVPTPCAALAE-QALSAPALAVTARRVAEVRA  280 (364)
T ss_pred             CCEEEEecChhhcccccceeeeeeCCH------HHHHHHHhccCCC--CCCHHHHHHHH-HHHhcccHHHHHHHHHHHHH
Confidence            12 7789999986  799999999987      7777776654332  22222233332 23332100123455667888


Q ss_pred             HHHHHHHHHHHC-CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccC
Q 010008          373 NCRALASRLVEL-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRG  451 (520)
Q Consensus       373 na~~l~~~L~~~-G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g  451 (520)
                      +++.+.+.|++. |+..+.+ ....++|+++.    +..++.+.|.+.||.|..    |+..+..++++||++.      
T Consensus       281 ~r~~l~~~L~~~~~~~~~~p-~~g~f~~~~~~----~~~~~~~~l~~~gI~v~~----~~~~~~~~~~~Ris~~------  345 (364)
T PRK04781        281 ERERLHAALAQLPGVRRVYP-SQGNFLLVRFD----DAEAAFQALLAAGVVVRD----QRAAPRLSDALRITLG------  345 (364)
T ss_pred             HHHHHHHHHHhCCCCCeECC-CCCcEEEEEcC----CHHHHHHHHHHCCeEEee----CCCCCCCCCeEEEeCC------
Confidence            889999999875 6642333 23455777764    457788889999999954    3321123578999864      


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 010008          452 FSEKEFVAIADFIHEGV  468 (520)
Q Consensus       452 ~~~~d~~~la~~i~~~l  468 (520)
                       +.++++++.+.|+++.
T Consensus       346 -~~~~~~~l~~al~~~~  361 (364)
T PRK04781        346 -TPEQNDRVLAALQRTQ  361 (364)
T ss_pred             -CHHHHHHHHHHHHHHH
Confidence             2789999999997643

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.87  E-value=1.5e-20  Score=194.86  Aligned_cols=330  Identities=20%  Similarity=0.227  Sum_probs=206.3

Q ss_pred             cceEecCCCC------ChHHHHHHHhh-hhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCC
Q 010008           95 SLELIASENF------TSRAVMEAVGS-CLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS  167 (520)
Q Consensus        95 ~i~Liasen~------~~~~V~ea~~s-~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~s  167 (520)
                      .|+|..+++.      .++++++++.. .....-..+|+.      ......+++...+++.+..|.+.+.. .+|.+++
T Consensus         3 ~I~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~------~~g~~~lr~~ia~~~~~~~~~~~~~~-~~i~~~~   75 (363)
T PF00155_consen    3 VINLGSNAPLLLSQNPPPPAAIKAAIRGAATSSSFLGYPP------PQGYPELREAIADFLGRRYGVPVDPE-ANILVTS   75 (363)
T ss_dssp             EEESSSSSTSSTTSSHHHHHHHHHHHHHHHHHTGCTSSTC------TTHHHHHHHHHHHHHHHHHTHHTTGG-EGEEEES
T ss_pred             EEEEECCCCCCcccccchHHHHHHHHHHhhcccccccCCC------chhhHHHHHHHHHHhhhccCcccccc-eEEEEec
Confidence            4566555442      34666666654 222222334443      22234566444444443334332211 2677899


Q ss_pred             hH-HHHHHHHHhh-CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC-CCCCCCHHHHHHHhhhc---
Q 010008          168 GS-PANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILF---  241 (520)
Q Consensus       168 Gs-~A~~~~l~al-l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-~~~~iD~d~le~~i~~~---  241 (520)
                      |+ +++..++..+ .++||+|++++|.|.++..        .+...|.  ++++++++. +++.+|++++++.+++.   
T Consensus        76 G~~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~  145 (363)
T PF00155_consen   76 GAQAALFLLLRLLKINPGDTVLVPDPCYPSYIE--------AARLLGA--EVIPVPLDSENDFHLDPEALEEALDELPSK  145 (363)
T ss_dssp             HHHHHHHHHHHHHHSSTTSEEEEEESSSTHHHH--------HHHHTTS--EEEEEEEEETTTTEETHHHHHHHHHTSHTT
T ss_pred             ccccchhhhhhcccccccccceecCCccccccc--------cccccCc--eeeecccccccccccccccccccccccccc
Confidence            99 5666666677 7899999999998765431        2344565  566666542 45799999999998875   


Q ss_pred             --CCcEEEEcCCCCCC--CCCHH---HHHHHHHHhCCEEEEechhhcccccccccC----CCCC-ccc-EEEeccCccc-
Q 010008          242 --RPKLIIAGASAYPR--DFDYP---RMRQIADAVGALLMMDMAHISGLVAASVVA----DPFK-YCD-VVTTTTHKSL-  307 (520)
Q Consensus       242 --~pklIi~~~s~~p~--~~d~~---~i~~ia~~~g~~li~D~Ah~~gli~~~~~~----~p~~-~aD-iv~~S~hK~l-  307 (520)
                        ++++|+++.++||+  .++.+   +|.++|+++|+++++|++|. +++..+...    ..+. +.+ +++.|++|++ 
T Consensus       146 ~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g  224 (363)
T PF00155_consen  146 GPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYS-DLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFG  224 (363)
T ss_dssp             TETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTT-TGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTT
T ss_pred             ccccceeeecccccccccccccccccchhhhhcccccceeeeecee-ccccCCCccCcccccccccccceeeeecccccc
Confidence              56889999999987  55555   55555999999999999954 444332110    1111 233 8889999976 


Q ss_pred             -CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHHHHHHC
Q 010008          308 -RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS--PEFKVYQNKVVSNCRALASRLVEL  384 (520)
Q Consensus       308 -~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~--~~~~~~~~~i~~na~~l~~~L~~~  384 (520)
                       +|.|.|++++++      ++.+.+.....++..   +....++++..+.....  ...++..+++.++++.+.+.|++.
T Consensus       225 ~~GlRvG~i~~~~------~~~~~l~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~  295 (363)
T PF00155_consen  225 LPGLRVGYIVAPP------ELIERLRRFQRSGLS---SSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI  295 (363)
T ss_dssp             SGGGTEEEEEEEH------HHHHHHHHHHHHTTS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccccccchh------hhhhhhhhccccccc---cchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh
Confidence             678889999977      677776654333322   22222222223332211  145778888999999999999888


Q ss_pred             CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhh-cCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHH
Q 010008          385 GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF  463 (520)
Q Consensus       385 G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~-~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~  463 (520)
                      |+.+..+. .+++.|+++...  +..++.+.|.+ .||.+.    ||.... .++++||++ +.    .++++++++++.
T Consensus       296 ~~~~~~~~-~~~~~~~~~~~~--~~~~l~~~L~~~~gi~v~----pg~~~~-~~~~iRi~~-a~----~~~e~~~~~~~~  362 (363)
T PF00155_consen  296 GITVLPPE-AGFFLWVRLDPN--DAEELAQELLEEYGILVR----PGSYFG-VPGYIRISL-AS----HSEEDLEEALER  362 (363)
T ss_dssp             TSEEEHHS-BSSEEEEEESHH--HHHHHHHHHHHHHTEEEE----EGGGGT-STTEEEEEG-GC----SCHHHHHHHHHH
T ss_pred             hhheeecc-CccEEEEEcccc--hHHHHHHHHHHhCCEEEE----ecCCCC-CCCEEEEEe-cc----CCHHHHHHHHhh
Confidence            99988653 356666666432  34555555555 599995    444311 278999997 32    347999998887


Q ss_pred             H
Q 010008          464 I  464 (520)
Q Consensus       464 i  464 (520)
                      |
T Consensus       363 l  363 (363)
T PF00155_consen  363 L  363 (363)
T ss_dssp             H
T ss_pred             C
Confidence            5

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.87  E-value=1.1e-19  Score=193.80  Aligned_cols=300  Identities=17%  Similarity=0.163  Sum_probs=202.9

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceE
Q 010008          137 IDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYF  215 (520)
Q Consensus       137 ~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~  215 (520)
                      ...+.+...+++....|+..+ . -+|.+|+|+ +|+.+++..+++|||+|++-+|+|.+.+.        .+...|.  
T Consensus       134 ~~~LR~~ia~~l~~~~g~~~~-~-~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~~--------~~~~~g~--  201 (459)
T COG1167         134 LPELREAIAAYLLARRGISCE-P-EQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGALQ--------ALEALGA--  201 (459)
T ss_pred             cHHHHHHHHHHHHHhcCCccC-c-CeEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHH--------HHHHcCC--
Confidence            345555555677766677642 1 167789999 89999999999999999999998765532        3344554  


Q ss_pred             EEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhccccccccc
Q 010008          216 ESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG-ASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV  289 (520)
Q Consensus       216 ~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~-~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~  289 (520)
                      +++++++|  ...+|+|++++.+...+||++++. ...||+  ..+   -++|.++|+++|+++|.|.. +..+.+.+..
T Consensus       202 ~~~~vp~d--~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~-y~el~~~~~p  278 (459)
T COG1167         202 RVIPVPVD--EDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDY-YGELRYDGPP  278 (459)
T ss_pred             cEEecCCC--CCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCc-chhhhcCCCC
Confidence            77777776  457999999999998889999987 446886  444   45799999999999999987 4455544433


Q ss_pred             CCCCC-----cccEEEeccCccc-CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchh
Q 010008          290 ADPFK-----YCDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF  363 (520)
Q Consensus       290 ~~p~~-----~aDiv~~S~hK~l-~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~  363 (520)
                      +.++.     +--|.++||+|++ +|.|.||+++++      ++.+++.....-...+++...+ .+++.-+.   ...|
T Consensus       279 ~~~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~------~~~~~~~~~k~~~~~~~s~~~Q-~~la~~l~---~G~~  348 (459)
T COG1167         279 PPPLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPP------ELIEKLLRLKQAADLGPSSLSQ-AALAAFLL---SGHY  348 (459)
T ss_pred             CCChHhhCCCCCEEEEeeehhhcccccceeeeeCCH------HHHHHHHHHHHHhcCCCChHHH-HHHHHHHH---cCCH
Confidence            33333     1227889999997 899999999998      5666554322222233333322 22322222   2223


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHCC---CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC---C
Q 010008          364 ----KVYQNKVVSNCRALASRLVELG---YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK---S  433 (520)
Q Consensus       364 ----~~~~~~i~~na~~l~~~L~~~G---~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~---~  433 (520)
                          ....+.+.++++.+.+.|.+.+   +.+..+ ....++|+.+. .+++...+.+.+.+.||.+..   +|..   .
T Consensus       349 ~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p-~gG~flwl~l~-~~~~~~~l~~~a~~~gv~i~~---~g~~f~~~  423 (459)
T COG1167         349 DRHLRRLRREYARRRDALLEALAEYLPELATWTRP-EGGLFLWLELP-EGIDARELLAAALEKGVVVTP---LGSAFSAD  423 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecC-CceEEEEEEcC-CCCCHHHHHHHHHHCCCEEEc---CCccccCC
Confidence                4455666777788888888742   233222 33456677774 567888888888889999843   1332   1


Q ss_pred             CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          434 ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       434 ~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      +...+++|+|....+     ++++++..+.|.++++..
T Consensus       424 ~~~~~~~Rl~~s~~~-----~e~i~~gi~~l~~~~~~~  456 (459)
T COG1167         424 GDPRNGLRLSFSSPS-----EEEIEEGIKRLAALLREA  456 (459)
T ss_pred             CCCCCeEEEEcCCCC-----HHHHHHHHHHHHHHHHHH
Confidence            113458999987543     688988888888887653

>PLN02397 aspartate transaminase

Probab=99.86  E-value=5.8e-20  Score=194.44  Aligned_cols=267  Identities=19%  Similarity=0.236  Sum_probs=171.6

Q ss_pred             eecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEccc-CCCCCCCCHHHHHHHhhh-
Q 010008          163 VQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEKTAIL-  240 (520)
Q Consensus       163 V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~-d~~~~~iD~d~le~~i~~-  240 (520)
                      |..++|+.++...+.+++.|||+|++++|.|.++..        .+...|.  +++.+++ +++++.+|++.+++.+.. 
T Consensus       122 i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~--------~~~~~g~--~~~~v~l~~~~~~~~d~~~l~~~l~~~  191 (423)
T PLN02397        122 CLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHHN--------IFRDAGV--PVRTYRYYDPKTRGLDFDGLLEDLKAA  191 (423)
T ss_pred             cccchHHHHHHHHHHHHhCCCCEEEEeCCCchhHHH--------HHHHcCC--eEEEeecccCcCCccCHHHHHHHHHhC
Confidence            334455555666666777899999999998876532        2345565  6666666 334578999999887763 


Q ss_pred             -cCCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccc---cCC--CCC-ccc--EEEeccCcc
Q 010008          241 -FRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV---VAD--PFK-YCD--VVTTTTHKS  306 (520)
Q Consensus       241 -~~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~---~~~--p~~-~aD--iv~~S~hK~  306 (520)
                       .+++++++++|+||+  ..   .+++|.++|+++|+++|+|++ |.++.+.+.   .+.  .+. ..+  |++.|++|+
T Consensus       192 ~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~-Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~  270 (423)
T PLN02397        192 PDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSA-YQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKN  270 (423)
T ss_pred             CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecc-cCCccCCchhhhhHHHHHHHhcCCcEEEEEECccc
Confidence             256788888999997  44   467788899999999999999 667765431   111  111 112  678899998


Q ss_pred             c--CCCCceEEE--eeCCCcchhhHHH----hhcccCCCCCCCCChHHHHHHHHHHHHHh--cC---chhHHHHHHHHHH
Q 010008          307 L--RGPRGGMIF--FKKDPVLGVELES----AINNAVFPGLQGGPHNHTIGGLAVCLKHA--QS---PEFKVYQNKVVSN  373 (520)
Q Consensus       307 l--~GprgG~I~--~~~~~~~~~~l~~----~i~~~~~p~~~g~p~~~~iaala~al~~~--~~---~~~~~~~~~i~~n  373 (520)
                      +  +|+|.||++  ....     ++.+    .+.........+.+...+ .+.+.+|..-  .+   ..+++..+++.++
T Consensus       271 ~~~~G~RvG~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~q-~~~~~~L~~~~~~~~~~~~~~~~~~~~~~r  344 (423)
T PLN02397        271 MGLYGERVGALSVVCKSA-----DVAVRVKSQLKLIARPMYSNPPIHGA-SIVATILGDPELFSEWTKELKGMADRIISM  344 (423)
T ss_pred             CCCccccceEEEEEeCCH-----HHHHHHHHHHHHHHhcccCCCcHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            6  699999985  3221     3322    332222111222222222 2222233210  00   1135567788899


Q ss_pred             HHHHHHHHHHCC----CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccc
Q 010008          374 CRALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTT  449 (520)
Q Consensus       374 a~~l~~~L~~~G----~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt  449 (520)
                      ++.+.+.|++.|    +.++.+ ....++|+++     +.+.+.++|+++||.+.            +++ ||++..   
T Consensus       345 r~~l~~~L~~~~~~~~~~~~~p-~gg~fl~~~l-----~~~~~~~Ll~~~~V~v~------------~~~-Ri~~~~---  402 (423)
T PLN02397        345 RQKLYDALEARGSPGDWSHITK-QIGMFSFTGL-----NKEQVDRMTKEYHIYMT------------RDG-RISMAG---  402 (423)
T ss_pred             HHHHHHHHHhcCCCCCCCcccC-CceEEEecCC-----CHHHHHHHHHhCCEEEC------------CCC-eEEEee---
Confidence            999999999876    665443 2346667665     34677778899999993            123 988643   


Q ss_pred             cCCCHHHHHHHHHHHHHHHHH
Q 010008          450 RGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       450 ~g~~~~d~~~la~~i~~~l~~  470 (520)
                        .++++++++++.|++++.+
T Consensus       403 --~~~~~i~~~~~~i~~~~~~  421 (423)
T PLN02397        403 --LSSKNVPYLADAIHAVVTN  421 (423)
T ss_pred             --CCHHHHHHHHHHHHHHHhc
Confidence              4579999999999999763

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.86  E-value=5.6e-20  Score=188.56  Aligned_cols=300  Identities=13%  Similarity=0.077  Sum_probs=193.4

Q ss_pred             ccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHH
Q 010008           94 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PAN  172 (520)
Q Consensus        94 ~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~  172 (520)
                      ..|+|..+||+..+     .  ...+.    ||...       .+++.    +.+++.+|++++    +|.+++|+ +++
T Consensus        17 ~~i~l~~Nenp~~~-----~--~~~~~----Yp~~~-------~~~lr----~~ia~~~~~~~~----~I~it~Gs~~~l   70 (332)
T PRK06425         17 RIIDFSANINDFMD-----I--GDISI----YPEIS-------YTDIE----DQIKIYTQGLKI----KVLIGPGLTHFI   70 (332)
T ss_pred             CEEEeccccCCCcC-----h--hhccc----CcCcC-------HHHHH----HHHHHHhCCCcc----eEEECCCHHHHH
Confidence            45889999998631     0  01122    34311       23333    678889999875    57779999 788


Q ss_pred             HHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 010008          173 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA  252 (520)
Q Consensus       173 ~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~  252 (520)
                      ..++. +++||+ |++++|.|..+.        ..+...|.  +++.++++.  ..+|.+.+++    .++|+|++++|+
T Consensus        71 ~~~~~-~~~~~~-vv~~~P~y~~y~--------~~~~~~G~--~v~~vp~~~--~~~~~~~l~~----~~~k~v~l~nP~  132 (332)
T PRK06425         71 YRLLS-YINVGN-IIIVEPNFNEYK--------GYAFTHGI--RISALPFNL--INNNPEILNN----YNFDLIFIVSPD  132 (332)
T ss_pred             HHHHH-HhCCCc-EEEeCCChHHHH--------HHHHHcCC--eEEEEeCCc--ccCcHHHHhh----cCCCEEEEeCCC
Confidence            87776 578875 666688765432        23445565  666666653  3456555442    389999999999


Q ss_pred             CCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCC---C-cc-cEEEeccCccc--CCCCceEEEeeCC
Q 010008          253 YPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YC-DVVTTTTHKSL--RGPRGGMIFFKKD  320 (520)
Q Consensus       253 ~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~---~-~a-Div~~S~hK~l--~GprgG~I~~~~~  320 (520)
                      ||+  ..+   +++|.++|+++|++||+|++ |..+...+ .++..   + +. -+++.|++|++  +|.|.||+++++ 
T Consensus       133 NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~-Y~~~~~~~-~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~-  209 (332)
T PRK06425        133 NPLGNLISRDSLLTISEICRKKGALLFIDEA-FIDFVPNR-AEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDD-  209 (332)
T ss_pred             CCcCCccCHHHHHHHHHHHHHcCCEEEEecc-hhcccccc-chhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCH-
Confidence            997  555   56677778899999999998 44554322 11111   1 11 26779999975  799999999987 


Q ss_pred             CcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEE
Q 010008          321 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF-KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVL  399 (520)
Q Consensus       321 ~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~-~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~  399 (520)
                           ++.+.+.+...+...+     ..+. + ++.......+ +...+.+.++++.+.+.|.+.|+.+..+. ...++|
T Consensus       210 -----~li~~l~~~~~~~~~~-----~~~~-~-~l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~-~g~f~~  276 (332)
T PRK06425        210 -----YNMKISRKITEPWSVC-----DPAI-D-FIRSIDLDYVAKHSLDIMENERSYLINNLEAMGFRAAGDP-SANFIT  276 (332)
T ss_pred             -----HHHHHHHHcCCCCccC-----HHHH-H-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCC-CceEEE
Confidence                 6777766533222111     1111 1 1221111222 45677788889999999998888876432 345677


Q ss_pred             EEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          400 VDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       400 vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      +.+.    +..++.+.|.++||.+..    |.. +...++++||++.       +.++++++.++|++++
T Consensus       277 ~~~~----~~~~~~~~l~~~gi~v~~----~~~f~~~~~~~iRis~~-------~~~~~~~l~~al~~~~  331 (332)
T PRK06425        277 FMIP----DAHDFYSYLLKNGILVRL----LDDYECLGEQYIRIAIR-------RRSFNIKLVNALRNFL  331 (332)
T ss_pred             EEcC----CHHHHHHHHHHCCeEEEE----CCCCCCCCCCEEEEEeC-------CHHHHHHHHHHHHHHh
Confidence            7663    466777777789999954    432 1223578999864       2689999999998764

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.86  E-value=5.5e-21  Score=192.73  Aligned_cols=219  Identities=19%  Similarity=0.176  Sum_probs=156.0

Q ss_pred             HHHHHHHHcCCCCCCCceeeecCCh-HHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEccc
Q 010008          144 CQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL  222 (520)
Q Consensus       144 a~~~~~~lfg~~~~~~~~~V~~~sG-s~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~  222 (520)
                      ++++++++||++.    +.+. ++| +.|+.+++.++++|||+|++..+.|.++..        .+...|.  +++.++.
T Consensus        64 ~~~~~A~~~ga~~----~~~~-~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~--------~~~~~g~--~~~~v~~  128 (294)
T cd00615          64 AQELAARAFGAKH----TFFL-VNGTSSSNKAVILAVCGPGDKILIDRNCHKSVIN--------GLVLSGA--VPVYLKP  128 (294)
T ss_pred             HHHHHHHHhCCCC----EEEE-cCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHH--------HHHHCCC--EEEEecC
Confidence            3478889999875    2233 455 489999999999999999999987755431        2334555  4444433


Q ss_pred             CCCC-----CCCCHHHHHHHhhh-cCCcEEEEcCCCCCC-CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCC-C
Q 010008          223 DEST-----GLVDYDMLEKTAIL-FRPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-K  294 (520)
Q Consensus       223 d~~~-----~~iD~d~le~~i~~-~~pklIi~~~s~~p~-~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~-~  294 (520)
                      +.+.     +.+|++++++++++ .++|+|+++.|++.+ ..|+++|.++|+++|+++++|+||.+++.+.+..+... .
T Consensus       129 ~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~  208 (294)
T cd00615         129 ERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNPTYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAM  208 (294)
T ss_pred             ccCcccCcCCCCCHHHHHHHHHhCCCceEEEEECCCCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhh
Confidence            3221     47999999999875 268999888776544 78999999999999999999999987654433322222 2


Q ss_pred             -cccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010008          295 -YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVS  372 (520)
Q Consensus       295 -~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~  372 (520)
                       ++|++++|+||+++|+++ |++..+++..    ..+++.........++|+...++++..+++.+.. +..++.++..+
T Consensus       209 ~~~div~~S~hK~l~g~~~~~~l~~~~~~~----~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~~~-~g~~~~~~~~~  283 (294)
T cd00615         209 AGADIVVQSTHKTLPALTQGSMIHVKGDLV----NPDRVNEALNLHQSTSPSYLILASLDVARAMMAL-EGKELVEELIE  283 (294)
T ss_pred             cCCcEEEEchhcccchHhHHHHHHhCCCcC----CHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHH-HhHHHHHHHHH
Confidence             689999999999999886 6666665311    1223333322334578899999999998887642 33667788888


Q ss_pred             HHHHHHHHHH
Q 010008          373 NCRALASRLV  382 (520)
Q Consensus       373 na~~l~~~L~  382 (520)
                      +++.+++.|.
T Consensus       284 ~~~~~r~~l~  293 (294)
T cd00615         284 LALYARQEIN  293 (294)
T ss_pred             HHHHHHHHHh
Confidence            8888888775

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PRK05968 hypothetical protein; Provisional

Probab=99.86  E-value=2.5e-20  Score=194.90  Aligned_cols=289  Identities=18%  Similarity=0.137  Sum_probs=190.3

Q ss_pred             chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccc
Q 010008          134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  213 (520)
Q Consensus       134 ~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~  213 (520)
                      ++.++++|    +++++++|.+.     .+.++||+.|+.+++.++++|||+|++..+.|++.+....    ..+...|.
T Consensus        62 ~p~~~~le----~~lA~l~g~~~-----av~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~----~~~~~~G~  128 (389)
T PRK05968         62 NPTVRAFE----EMLAKLEGAED-----ARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFE----TILKRMGV  128 (389)
T ss_pred             ChhHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHH----HHHHHcCc
Confidence            45567777    67889999976     2456899999999999999999999999988876532110    11223344


Q ss_pred             eEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCC
Q 010008          214 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD  291 (520)
Q Consensus       214 ~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~  291 (520)
                        +++.++.      .|++++++++ + ++|+|++..|.++.  ..|+++|.++|+++|+++++|++|..+...     .
T Consensus       129 --~v~~vd~------~d~~~l~~~i-~-~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~-----~  193 (389)
T PRK05968        129 --EVDYVDG------RDEEAVAKAL-P-GAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQ-----R  193 (389)
T ss_pred             --eEEEeCC------CCHHHHHHhc-c-cCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhcc-----C
Confidence              5555432      2889999888 4 78999998887775  679999999999999999999998665421     2


Q ss_pred             CCC-cccEEEeccCcccCCC---CceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHH
Q 010008          292 PFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ  367 (520)
Q Consensus       292 p~~-~aDiv~~S~hK~l~Gp---rgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~  367 (520)
                      |+. ++|++++|+||++.||   ++|+++.++      ++.+++.....+...+..+ ...+++  .+..+  ..+....
T Consensus       194 p~~~g~Divv~S~tK~l~g~~~~~gG~i~~~~------~~~~~l~~~~~~~~g~~~~-~~~A~~--~l~~L--~tl~~r~  262 (389)
T PRK05968        194 PITLGVDLVIHSASKYLGGHSDTVAGVVAGSK------EHIARINAEAYPYLGAKLS-PFEAWL--LLRGL--RTLPLRM  262 (389)
T ss_pred             chhcCCcEEEeeccccccCCCCeEEEEEEECH------HHHHHHHHHHHHhCCCCCC-hHHHHH--HHccc--CcHHHHH
Confidence            343 7899999999999886   468888776      5666555432222212222 222222  22222  2346677


Q ss_pred             HHHHHHHHHHHHHHHH-CCCEEec-CCCCC----------eeEEEEecCCCCCHHHHHHHHhhcCeEEcCCC-----CCC
Q 010008          368 NKVVSNCRALASRLVE-LGYKLVS-GGSDN----------HLVLVDLRPMGIDGARVEKILDMASITLNKNS-----VPG  430 (520)
Q Consensus       368 ~~i~~na~~l~~~L~~-~G~~v~~-~gt~~----------~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~-----~Pg  430 (520)
                      ++..++++.+++.|++ .++..+. ++..+          .++.+++.. +.+...+.+.|+..+|.++.+.     .|.
T Consensus       263 ~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~-~~~~~~f~~~L~~~~~~~s~G~~~slv~p~  341 (389)
T PRK05968        263 KAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFRE-GIDVRAFADALKLFRLGVSWGGHESLVVPA  341 (389)
T ss_pred             HHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECC-HHHHHHHHHhCCccEEecCCCCCCceeeeC
Confidence            8888899999999987 4664443 33221          255556542 3344556677777777776542     132


Q ss_pred             CCC-----------C--CCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          431 DKS-----------A--LVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       431 ~~~-----------~--~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      ...           .  ..++-||+|..        -|+.+.+.+-+.+++..
T Consensus       342 ~~~~~~~~~~~~~~~~gi~~~liR~SvG--------lE~~~dl~~dl~~al~~  386 (389)
T PRK05968        342 EVVLQQKAQPNSAARFGVSPRSVRLHVG--------LEGTEALWADLEQALAA  386 (389)
T ss_pred             cccccccCCHHHHHhcCCCCCeEEEEec--------cCCHHHHHHHHHHHHHH
Confidence            110           1  11457899865        35677777777777653

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.86  E-value=1.8e-19  Score=190.83  Aligned_cols=300  Identities=17%  Similarity=0.174  Sum_probs=194.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh---------CCCCCEEEEcCCCCCcccccccccccc
Q 010008          136 YIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI---------LKPHDRIMGLDLPHGGHLSHGFMTPKR  206 (520)
Q Consensus       136 ~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al---------l~pGD~Vl~~~~~~~ghls~g~~~~~~  206 (520)
                      ...++|    +.+++++|.+.     .+.++||++|+.+++.++         ++|||+|++++++|.+...        
T Consensus        64 ~~~~fe----~~lA~~~g~~~-----~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~--------  126 (438)
T PRK15407         64 FNDAFE----KKLAEFLGVRY-----ALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVN--------  126 (438)
T ss_pred             hHHHHH----HHHHHHhCCCe-----EEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHH--------
Confidence            356676    67888999874     355688999999888876         5899999999988755421        


Q ss_pred             ccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccc
Q 010008          207 RVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA  286 (520)
Q Consensus       207 ~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~  286 (520)
                      .+...|.  +++.++++++++.+|++++++.+++ ++|+|++.++ ++...|+++|.++|+++|++||+|++|+.|....
T Consensus       127 ~v~~~G~--~pv~vdvd~~~~~id~~~le~~i~~-~tkaVi~~~~-~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~  202 (438)
T PRK15407        127 PIIQNGL--VPVFVDVELPTYNIDASLLEAAVSP-KTKAIMIAHT-LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYD  202 (438)
T ss_pred             HHHHcCC--EEEEEecCCCcCCcCHHHHHHHcCc-CCeEEEEeCC-CCChhhHHHHHHHHHHCCCEEEEECccchhhhcC
Confidence            2334454  7777778767789999999999987 8999988643 2336799999999999999999999999998766


Q ss_pred             cccCCCCCcccEEEeccC--cccCCCCceEEEeeCCCcchhhHHHhhcccCCCC--------------------------
Q 010008          287 SVVADPFKYCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPG--------------------------  338 (520)
Q Consensus       287 ~~~~~p~~~aDiv~~S~h--K~l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~--------------------------  338 (520)
                      +.....  ..|+.++|+|  |.+....||+++++++     ++.+++......|                          
T Consensus       203 g~~~G~--~gd~~~fSf~~~k~~~~geGG~l~t~d~-----~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (438)
T PRK15407        203 GRMTGT--FGDIATLSFYPAHHITMGEGGAVFTNDP-----LLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPF  275 (438)
T ss_pred             Ceeeec--cCceEEEeCCCCCCccccCceEEEECCH-----HHHHHHHHHHHhCcccccccccccccccccccccccccc
Confidence            532221  3588888887  6576556899999986     4444322110000                          


Q ss_pred             ---------CCCC-ChH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-C-CEEec--CCCC-C-eeEEEE
Q 010008          339 ---------LQGG-PHN-HTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-G-YKLVS--GGSD-N-HLVLVD  401 (520)
Q Consensus       339 ---------~~g~-p~~-~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G-~~v~~--~gt~-~-~~~~vd  401 (520)
                               ..|. ..+ ...||++  +.++  ..+++..++.+++++.+.+.|.+. | +.+..  .+.. + +.+.+-
T Consensus       276 ~~~~~~~~~~~G~n~rmsel~AAig--~~qL--~~l~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~  351 (438)
T PRK15407        276 GYDHKYTYSHLGYNLKITDMQAAIG--LAQL--EKLPGFIEARKANFAYLKEGLASLEDFLILPEATPNSDPSWFGFPIT  351 (438)
T ss_pred             cccccccccccccccCccHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEEEEEEE
Confidence                     0010 011 1233332  3332  345677788888889899999763 3 22221  1221 1 222233


Q ss_pred             ecC-CCCCHHHHHHHHhhcCeEEcCCCC-CCCC-CCCC----------CC----EEE-EccCCccccCCCHHHHHHHHHH
Q 010008          402 LRP-MGIDGARVEKILDMASITLNKNSV-PGDK-SALV----------PG----GIR-IGSPAMTTRGFSEKEFVAIADF  463 (520)
Q Consensus       402 ~~~-~g~~~~~~~~~L~~~gI~v~~~~~-Pg~~-~~~~----------~~----giR-ig~~~~tt~g~~~~d~~~la~~  463 (520)
                      +.. .+.+.+++.+.|.+.||.++..+. |-+. +.+.          |.    .-| |++|..  .+++++|++++++.
T Consensus       352 ~~~~~~~~Rd~l~~~L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~--~~l~~~~v~~i~~~  429 (438)
T PRK15407        352 VKEDAGFTRVELVKYLEENKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVY--PGLTEEMLDYVIEK  429 (438)
T ss_pred             ECCcCCCCHHHHHHHHHHCCCCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecCC--CCCCHHHHHHHHHH
Confidence            322 245678899999999998765432 2221 1000          00    001 233322  35889999999999


Q ss_pred             HHHHHH
Q 010008          464 IHEGVE  469 (520)
Q Consensus       464 i~~~l~  469 (520)
                      |+++++
T Consensus       430 i~~~~~  435 (438)
T PRK15407        430 IEEFFG  435 (438)
T ss_pred             HHHHHh
Confidence            998774

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.86  E-value=4.9e-20  Score=192.75  Aligned_cols=289  Identities=18%  Similarity=0.204  Sum_probs=187.4

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +++..+++|    +++++++|.+.     .+.+.||+.|+.+++.++++|||+|++.++.|++++...    ...+...|
T Consensus        57 ~~p~~~~le----~~lA~l~g~~~-----av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~----~~~~~~~G  123 (391)
T TIGR01328        57 GNPTVSNLE----GRIAFLEGTEA-----AVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALL----EHALTKFG  123 (391)
T ss_pred             CCchHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHH----HHHHhcCC
Confidence            345677888    67899999986     355689999999999999999999999998877553211    01122234


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .  ++..++++      |++++++++++ ++|+|++..++||+  ..|+++|.++|+++|+++++|++|..+..     .
T Consensus       124 ~--~~~~vd~~------d~e~l~~~i~~-~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~-----~  189 (391)
T TIGR01328       124 I--QVDFINMA------IPEEVKAHIKD-NTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPML-----T  189 (391)
T ss_pred             e--EEEEECCC------CHHHHHHhhcc-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhcc-----C
Confidence            3  55555442      78999999987 89999999888886  78999999999999999999999876543     2


Q ss_pred             CCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  366 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~  366 (520)
                      .++. ++|++++|++|+++|+.   ||+++.++      ++.+++.........|+......+++  +++.+  ......
T Consensus       190 ~~~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~------~li~~l~~~~~~~~~g~~l~~~~a~l--~l~~L--~tl~~r  259 (391)
T TIGR01328       190 NPVALGVDVVVHSATKYIGGHGDVVAGLICGKA------ELLQQIRMVGIKDMTGSVISPFDAWL--ILRGL--KTLNIR  259 (391)
T ss_pred             CchhcCCCEEEccccccccCCCCceEEEEEcCH------HHHHHHHHHHHHhCCCCCCCcHHHHH--HHhCc--CcHHHH
Confidence            3344 79999999999997654   68888776      66655543211111222122222322  22322  234566


Q ss_pred             HHHHHHHHHHHHHHHHH-CCCE-EecCCCC---------------CeeEEEEecCCCCCHHHHHHHHhhcCe---EEcCC
Q 010008          367 QNKVVSNCRALASRLVE-LGYK-LVSGGSD---------------NHLVLVDLRPMGIDGARVEKILDMASI---TLNKN  426 (520)
Q Consensus       367 ~~~i~~na~~l~~~L~~-~G~~-v~~~gt~---------------~~~~~vd~~~~g~~~~~~~~~L~~~gI---~v~~~  426 (520)
                      .++..+|++.+++.|++ .++. +..++-.               +.++.++++  + +.+.+.++++...+   .++.+
T Consensus       260 ~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~--~-~~~~~~~f~~~l~~~~~~~s~G  336 (391)
T TIGR01328       260 MKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELK--G-GFAGAKKLLNNLKLIRLAVSLG  336 (391)
T ss_pred             HHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeC--C-CHHHHHHHHHhCCcceEecCCC
Confidence            78889999999999987 3453 3333321               224455553  2 23445555555444   33332


Q ss_pred             C------CCCCCC--C----------CCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          427 S------VPGDKS--A----------LVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       427 ~------~Pg~~~--~----------~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      .      .|...+  .          ..++-||++..        -||.+.+.+-|.+++.
T Consensus       337 ~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG--------lE~~~dl~~dl~~al~  389 (391)
T TIGR01328       337 DAETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVG--------LEDADDLIADLKQALD  389 (391)
T ss_pred             CCcccCcCCCccccccCCHHHHHhcCCCCCeEEEEeC--------cCCHHHHHHHHHHHHh
Confidence            1      122110  0          11346888754        3678877777777764

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.86  E-value=2.1e-19  Score=187.31  Aligned_cols=319  Identities=13%  Similarity=0.083  Sum_probs=200.0

Q ss_pred             hHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-CCCCC
Q 010008          106 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPHD  184 (520)
Q Consensus       106 ~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al-l~pGD  184 (520)
                      ++.-++++...+.....        ++..+..+++|    +++++++|.+.     .+.++||++|+.+++.++ ++|||
T Consensus        10 ~~~~~~~~~~~l~~~~~--------~g~~~~~~~~e----~~la~~~g~~~-----~v~~~sgt~al~~~l~~~~~~~Gd   72 (375)
T PRK11706         10 VGTELDYIQQAMSSGKL--------CGDGGFTRRCQ----QWLEQRFGSAK-----VLLTPSCTAALEMAALLLDIQPGD   72 (375)
T ss_pred             CHHHHHHHHHHHHcCCc--------cCCCHHHHHHH----HHHHHHhCCCe-----EEEECCHHHHHHHHHHHhCCCCCC
Confidence            34445566655554331        22224456666    67888899864     244567779988777766 79999


Q ss_pred             EEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHH
Q 010008          185 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQ  264 (520)
Q Consensus       185 ~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~  264 (520)
                      +|++++++|.+..        ..+...|.  +++.++++++++.+|++++++++++ ++|+|++.++ ++...|+++|.+
T Consensus        73 ~Viv~~~t~~~~~--------~~~~~~G~--~~v~~d~d~~~~~~d~~~le~~i~~-~tk~i~~~~~-~G~~~~~~~i~~  140 (375)
T PRK11706         73 EVIMPSYTFVSTA--------NAFVLRGA--KIVFVDIRPDTMNIDETLIEAAITP-KTRAIVPVHY-AGVACEMDTIMA  140 (375)
T ss_pred             EEEECCCCcHHHH--------HHHHHcCC--EEEEEecCCCcCCcCHHHHHHhcCC-CCeEEEEeCC-CCCccCHHHHHH
Confidence            9999998775442        13344565  7788888876778999999999988 8999987643 445789999999


Q ss_pred             HHHHhCCEEEEechhhcccccccccCCCCC-cccEEEeccC--cccCCCCceEEEeeCCCcchhhHHHhhcccCCCC---
Q 010008          265 IADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPG---  338 (520)
Q Consensus       265 ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S~h--K~l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~---  338 (520)
                      +|+++|++||+|++|+.|....+.   ++. ..|+.++|+|  |+++...||+++++++     ++.+++......+   
T Consensus       141 la~~~~i~vIeD~a~a~g~~~~~~---~~g~~~~~~~~Sf~~~K~l~~g~gG~~~~~~~-----~~~~~~~~~~~~g~~~  212 (375)
T PRK11706        141 LAKKHNLFVVEDAAQGVMSTYKGR---ALGTIGHIGCFSFHETKNYTAGEGGALLINDP-----ALIERAEIIREKGTNR  212 (375)
T ss_pred             HHHHcCCEEEEECccccccccCCe---eeecCcCEEEEeCCCCccccccCCeEEEECCH-----HHHHHHHHHHHcCCCc
Confidence            999999999999999888643332   222 4688889988  9986556677777664     5554332211100   


Q ss_pred             --------------CCCC-Ch-HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC---C-CEEe--cCCC--C
Q 010008          339 --------------LQGG-PH-NHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL---G-YKLV--SGGS--D  394 (520)
Q Consensus       339 --------------~~g~-p~-~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~---G-~~v~--~~gt--~  394 (520)
                                    ..|. .. ....|++.  +.++  ..+++..++..++++.+.+.|.+.   | +.+.  .++.  .
T Consensus       213 ~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~--~~ql--~~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  288 (375)
T PRK11706        213 SQFFRGQVDKYTWVDIGSSYLPSELQAAYL--WAQL--EAADRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHN  288 (375)
T ss_pred             chhhccCCCcceeeecccccCcCHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCcee
Confidence                          0111 11 12333332  2222  234556666777777888888653   2 3322  1111  2


Q ss_pred             CeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCC-CCC---------CC----EEE-EccCCccccCCCHHHHHH
Q 010008          395 NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKS-ALV---------PG----GIR-IGSPAMTTRGFSEKEFVA  459 (520)
Q Consensus       395 ~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~-~~~---------~~----giR-ig~~~~tt~g~~~~d~~~  459 (520)
                      .+++++.+. .+.+.+++.+.|.++||.++..+.|.+.. .+.         +.    .=| +++|..  ..++++|+++
T Consensus       289 ~~~~~~~~~-~~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~--~~l~~~~~~~  365 (375)
T PRK11706        289 AHMFYIKLR-DLEDRSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLF--YNLTDVEQRT  365 (375)
T ss_pred             eEEEEEEEC-CcCCHHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCC--CCCCHHHHHH
Confidence            334455443 23567889999999999987655454321 100         00    001 233322  3578999999


Q ss_pred             HHHHHHHHH
Q 010008          460 IADFIHEGV  468 (520)
Q Consensus       460 la~~i~~~l  468 (520)
                      +++.|++.+
T Consensus       366 i~~~i~~~~  374 (375)
T PRK11706        366 VIDTILEFF  374 (375)
T ss_pred             HHHHHHHHh
Confidence            999998754

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.86  E-value=4.9e-20  Score=192.65  Aligned_cols=291  Identities=16%  Similarity=0.136  Sum_probs=187.6

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +++..+++|    +.+++++|.+.     .|.+.||+.|+.+++.++++|||+|++.++.|++.+....    ......|
T Consensus        59 ~~pt~~~Le----~~lA~l~G~~~-----al~~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~----~~~~~~g  125 (386)
T PRK06767         59 GNPTVKLFE----ERMAVLEGGEE-----ALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLE----VLEEKFM  125 (386)
T ss_pred             CCcchHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHH----HHHhhcC
Confidence            445567777    67889999864     4666899999999999999999999999987765532110    0001112


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                        ++...++      ..|++++++++++ ++|+|++.+++||+  ..|+++|.++|+++|+++++|++|..+..     .
T Consensus       126 --i~~~~~~------~~d~~~l~~~i~~-~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~-----~  191 (386)
T PRK06767        126 --ITHSFCD------METEADIENKIRP-NTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYL-----Q  191 (386)
T ss_pred             --eEEEEeC------CCCHHHHHHhhCc-CceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence              2322221      3488999999987 89999999999987  78999999999999999999999765433     2


Q ss_pred             CCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  366 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~  366 (520)
                      .|+. ++|++++|++|++.|+.   ||++++++      ++..++....... .|+......+++  ++..+  ......
T Consensus       192 ~pl~~g~Div~~S~sK~l~g~g~~~gG~v~~~~------~~i~~~~~~~~~~-~g~~~~~~~a~l--~~~~L--~tl~~r  260 (386)
T PRK06767        192 RPLELGCDAVVHSATKYIGGHGDVVAGVTICKT------RALAEKIRPMRKD-IGGIMAPFDAWL--LLRGL--KTLAVR  260 (386)
T ss_pred             CchhcCCcEEEecCcceecCCCCceeEEEEeCh------HHHHHHHHHHHHH-hCCCCCHHHHHH--HHcCC--CcHHHH
Confidence            3343 78999999999997764   69999988      4433322111111 122111111221  22222  123566


Q ss_pred             HHHHHHHHHHHHHHHHH-CCCEEec-CCC---------CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCC------CC
Q 010008          367 QNKVVSNCRALASRLVE-LGYKLVS-GGS---------DNHLVLVDLRPMGIDGARVEKILDMASITLNKNS------VP  429 (520)
Q Consensus       367 ~~~i~~na~~l~~~L~~-~G~~v~~-~gt---------~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~------~P  429 (520)
                      .++..+|++.+++.|++ .++..+. ++.         .+.++.+++.....+...+.+.|+..++.++.+.      .|
T Consensus       261 ~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p  340 (386)
T PRK06767        261 MDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGGKEETQAFINDLHFITIAVSLGDTETLIQHP  340 (386)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhCCccEEecCCCCcCccccCC
Confidence            78889999999999988 4776433 211         1345666664211123456677777888776542      13


Q ss_pred             CCCC------------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          430 GDKS------------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       430 g~~~------------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ...+            ...++-||++..        -||.+.+.+-|.+++.
T Consensus       341 ~~~~~~~~~~~~~~~~gi~~~l~R~svG--------lE~~~dl~~dl~~al~  384 (386)
T PRK06767        341 ATMTHAAIPAELRQEMGIYDNLIRLSVG--------LESWEDIVSDLEQALK  384 (386)
T ss_pred             CccccccCCHHHHHhcCCCCCeEEEEec--------cCCHHHHHHHHHHHHh
Confidence            2110            012356888754        3677777777777664

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.85  E-value=4e-20  Score=194.69  Aligned_cols=286  Identities=17%  Similarity=0.229  Sum_probs=176.0

Q ss_pred             HHHHHHHHHHHHHHcC--CCCCCCceeee--cCChH-HHHHHHHH---hhCCCCCEEEEcCCCCCccccccccccccccc
Q 010008          138 DELETLCQKRALAAFN--LDENKWGVNVQ--PLSGS-PANFEVYT---AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS  209 (520)
Q Consensus       138 d~lE~~a~~~~~~lfg--~~~~~~~~~V~--~~sGs-~A~~~~l~---all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~  209 (520)
                      .++.+...+++.+..+  ++++    +|.  .++|+ +|+.+++.   ++++|||+|++++|.|.++..        .+.
T Consensus        75 ~~lR~aia~~~~~~~~~~~~~~----~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~--------~~~  142 (404)
T PTZ00376         75 QSFIEAAQKLLFGEASYALAEK----RIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVN--------IFK  142 (404)
T ss_pred             HHHHHHHHHHhcCCCccccccC----eEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHH--------HHH
Confidence            4555444555544433  3444    333  35555 67666554   678999999999998865532        334


Q ss_pred             cccceEEEEEcccCC-CCCCCCHHHHHHHhhhc--CCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhc
Q 010008          210 GTSIYFESMPYRLDE-STGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHIS  281 (520)
Q Consensus       210 ~~g~~~~~v~~~~d~-~~~~iD~d~le~~i~~~--~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~  281 (520)
                      ..|.  +++.+++.+ +++.+|++.+++.++..  ++++++++.|+||+  ..   ++++|.++|++||+++|+|++ |.
T Consensus       143 ~~G~--~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~-Y~  219 (404)
T PTZ00376        143 SAGL--NVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMA-YQ  219 (404)
T ss_pred             HcCC--ceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehh-hc
Confidence            5565  667777732 35789999999988642  34677778999997  33   467788889999999999998 55


Q ss_pred             ccccccc---cCC--CCC-cc--cEEEeccCccc--CCCCceEEE---eeCCCcchhhHHH----hhcccCCCCCCCCCh
Q 010008          282 GLVAASV---VAD--PFK-YC--DVVTTTTHKSL--RGPRGGMIF---FKKDPVLGVELES----AINNAVFPGLQGGPH  344 (520)
Q Consensus       282 gli~~~~---~~~--p~~-~a--Div~~S~hK~l--~GprgG~I~---~~~~~~~~~~l~~----~i~~~~~p~~~g~p~  344 (520)
                      ++.+.+.   ...  .+. ..  -+++.|++|++  +|+|.||++   .++      ++.+    .+.+.....+.+.+.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~  293 (404)
T PTZ00376        220 GFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALHIVCANK------EEAANVLSQLKLIIRPMYSSPPI  293 (404)
T ss_pred             CccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEEEEeCCH------HHHHHHHHHHHHHHhhhcCCCch
Confidence            5554321   110  011 11  27789999986  699999984   344      4333    222211111222222


Q ss_pred             HHHHHHHHHHHHHhc--C---chhHHHHHHHHHHHHHHHHHHHHCC----CEEecCCCCCeeEEEEecCCCCCHHHHHHH
Q 010008          345 NHTIGGLAVCLKHAQ--S---PEFKVYQNKVVSNCRALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKI  415 (520)
Q Consensus       345 ~~~iaala~al~~~~--~---~~~~~~~~~i~~na~~l~~~L~~~G----~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~  415 (520)
                      ..+ .+.+.+|+.-.  .   ...++..+++.++++.+.+.|.+.+    +.+..+ ..+.++|+++     +.+.++.+
T Consensus       294 ~~q-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~p-~gg~f~~~~~-----~~~~~~~L  366 (404)
T PTZ00376        294 HGA-RIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGSPGDWEHIIN-QIGMFSFTGL-----TKEQVERL  366 (404)
T ss_pred             HHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccc-CceEEEecCC-----CHHHHHHH
Confidence            222 22233342100  0   0123345677788899999998865    333332 2345566554     34556677


Q ss_pred             HhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          416 LDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       416 L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ++++||.+    +||        + ||++..     .+.++++++++.|++++.
T Consensus       367 ~~~~~v~v----~p~--------~-Ris~~~-----~~~~~~~~~~~~l~~~~~  402 (404)
T PTZ00376        367 IEKYHIYL----LDN--------G-RISVAG-----LTSKNVDYVAEAIHDVVR  402 (404)
T ss_pred             HHhCCEee----cCC--------C-eEEEec-----cCHHhHHHHHHHHHHHHh
Confidence            77789998    554        2 998743     447999999999998765

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.85  E-value=3e-19  Score=183.41  Aligned_cols=303  Identities=17%  Similarity=0.165  Sum_probs=201.0

Q ss_pred             hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC---CCCCCCceeeecCC
Q 010008           93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN---LDENKWGVNVQPLS  167 (520)
Q Consensus        93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg---~~~~~~~~~V~~~s  167 (520)
                      .+.|+|..+||+  +|+.+++++...+.......||.     .  ....+.    +.+++.++   ++++    +|.+++
T Consensus        19 ~~~i~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~Y~~-----~--~~~~Lr----~aia~~~~~~~~~~~----~i~it~   83 (335)
T PRK14808         19 RDRTYLALNENPFPFPEDLVDEVFRRLNSDTLRIYYD-----S--PDEELI----EKILSYLDTDFLSKN----NVSVGN   83 (335)
T ss_pred             CceeEecCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC-----C--ChHHHH----HHHHHHhCCCCCCcc----eEEEcC
Confidence            366889888875  68899999877654321111332     1  133444    44555565   6665    677799


Q ss_pred             hH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEE
Q 010008          168 GS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       168 Gs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklI  246 (520)
                      |+ +++..++.++    |.|++++|+|.++.        ..+...|.  +++.++++. ++.+|.+.    + . ++++|
T Consensus        84 Ga~~~i~~~~~~~----d~v~v~~P~y~~~~--------~~~~~~g~--~~~~v~~~~-~~~~~~~~----~-~-~~~~i  142 (335)
T PRK14808         84 GADEIIYVMMLMF----DRSVFFPPTYSCYR--------IFAKAVGA--KFLEVPLTK-DLRIPEVN----V-G-EGDVV  142 (335)
T ss_pred             CHHHHHHHHHHHh----CcEEECCCCHHHHH--------HHHHHcCC--eEEEecCCC-cCCCChhH----c-c-CCCEE
Confidence            98 8999888877    78999998775442        13445565  666777763 45555332    2 2 57899


Q ss_pred             EEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cc-cEEEeccCccc--CCCCceEEEeeCC
Q 010008          247 IAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YC-DVVTTTTHKSL--RGPRGGMIFFKKD  320 (520)
Q Consensus       247 i~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~a-Div~~S~hK~l--~GprgG~I~~~~~  320 (520)
                      +++.|+||+  ..+.+++.+++ +++++||+|+++ ..+. .......+. +. -+++.|++|++  +|+|.||+++++ 
T Consensus       143 ~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y-~~f~-~~~~~~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~-  218 (335)
T PRK14808        143 FIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAY-YEFH-GESYVDLLKKYENLAVIRTFSKAFSLAAQRIGYVVSSE-  218 (335)
T ss_pred             EEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECch-hhhc-CCchHHHHHhCCCEEEEEechhhccCcccceEEEEeCH-
Confidence            999999997  78899999998 579999999984 3332 111111111 22 27779999986  599999999987 


Q ss_pred             CcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEE
Q 010008          321 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV  400 (520)
Q Consensus       321 ~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~v  400 (520)
                           ++.+.+.....+  .+.....+.++ ..+++.  ...+++..+.+.++++.+.+.|.+.|+.+..+  +..++|+
T Consensus       219 -----~~~~~l~~~~~~--~~~~~~~q~a~-~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~--~g~f~~~  286 (335)
T PRK14808        219 -----KFIDAYNRVRLP--FNVSYVSQMFA-KVALDH--REIFEERTKFIVEERERMKSALREMGYRITDS--RGNFVFI  286 (335)
T ss_pred             -----HHHHHHHHhcCC--CCCCHHHHHHH-HHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHCCCEECCC--CCeEEEE
Confidence                 677777554322  22223333333 334442  12346667777888888999999888886654  3456677


Q ss_pred             EecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          401 DLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       401 d~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      .+.  +.+..++.+.|.++||.|..  +        ..++||++.       +.++++++.+.|.+
T Consensus       287 ~l~--~~~~~~~~~~l~~~Gi~V~~--~--------~~~~Risi~-------~~~~~~~~~~~l~~  333 (335)
T PRK14808        287 FME--KEEKERLLEHLRAKNIAVRS--F--------REGVRITIG-------KREENDMILKELEV  333 (335)
T ss_pred             eCC--CccHHHHHHHHHHCCeEEEE--C--------CCCeEEecC-------CHHHHHHHHHHHHh
Confidence            664  23456788889999999962  1        257999864       26899999888764

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.85  E-value=5e-19  Score=184.25  Aligned_cols=313  Identities=18%  Similarity=0.134  Sum_probs=193.2

Q ss_pred             hHHHHHHHhhhhhccC------CCCCCCCCCCCc-chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHh
Q 010008          106 SRAVMEAVGSCLTNKY------SEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA  178 (520)
Q Consensus       106 ~~~V~ea~~s~l~~~y------~~G~p~~ryy~g-~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~a  178 (520)
                      ++.+.+++...+....      ..|..|.|...| .+..+++|    +.+++++|.+.     .+..+||+.||..+...
T Consensus        20 ~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e----~~la~~~~~~~-----~l~~~sG~~a~~~~~~~   90 (370)
T PRK05937         20 SDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLE----HKIAHFHGAPE-----AFIVPSGYMANLGLCAH   90 (370)
T ss_pred             CHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHH----HHHHHHhCCCe-----EEEECChHHHHHHHHHH
Confidence            4555555544443211      133445554443 34455554    78999999965     25578999999877777


Q ss_pred             hCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc-----CCcEEEEcCCCC
Q 010008          179 ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAGASAY  253 (520)
Q Consensus       179 ll~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~-----~pklIi~~~s~~  253 (520)
                      +.++||.|+.....|++.+...        .....  ..+.++      .+|+++++++++..     ++++|++++.++
T Consensus        91 ~~~~~d~ii~d~~~H~sv~~~~--------~~~~~--~~~~~~------~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s  154 (370)
T PRK05937         91 LSSVTDYVLWDEQVHISVVYSL--------SVISG--WHQSFR------HNDLDHLESLLESCRQRSFGRIFIFVCSVYS  154 (370)
T ss_pred             hCCCCCEEEEEhhhhHHHHHHH--------HHcCC--ceEEec------CCCHHHHHHHHHhhhccCCCcEEEEEecCCC
Confidence            7788898887777665543211        11111  112232      46899999988742     244566665544


Q ss_pred             C--CCCCHHHHHHHHHHhCCEEEEechhhccccccccc----CCCCCcccEEEeccCcccCCCCceEEEeeCCCcchhhH
Q 010008          254 P--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV----ADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVEL  327 (520)
Q Consensus       254 p--~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~----~~p~~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l  327 (520)
                      +  ...|+++|+++|+++|+++++|++|+.|.+.....    ...+...++++.|++|.+ ||.|+.+++.+      +.
T Consensus       155 ~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~-g~~G~~vl~~~------~~  227 (370)
T PRK05937        155 FKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKAL-GSMGAALLSSS------EV  227 (370)
T ss_pred             CCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhh-hcCceEEEcCH------HH
Confidence            4  38899999999999999999999999886643321    111122346778999976 67776666765      43


Q ss_pred             HHhhcccCCCC-CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCC
Q 010008          328 ESAINNAVFPG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMG  406 (520)
Q Consensus       328 ~~~i~~~~~p~-~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g  406 (520)
                      ...+.....|. ..++.+...++++..+++.+...+ ....+++.++++++.+.|...+     .+   ....+.+.  +
T Consensus       228 ~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~-~~~~~~l~~l~~~l~~~l~~~~-----~~---~~~~i~~~--~  296 (370)
T PRK05937        228 KQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEG-ELARKQLFRLKEYFAQKFSSAA-----PG---CVQPIFLP--G  296 (370)
T ss_pred             HHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHhcCCCC-----CC---CEEEEEeC--C
Confidence            33332111111 233345556777777887664333 3445666666666666654321     11   11112232  2


Q ss_pred             CCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          407 IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       407 ~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      .+...+.+.|.+.||.++....|      ..+.||++++..+|    ++|++++++.|+++++..
T Consensus       297 ~~~~~~~~~L~~~gi~v~~~~~~------~~~~iRis~~~~~t----~edid~l~~~L~~~~~~~  351 (370)
T PRK05937        297 ISEQELYSKLVETGIRVGVVCFP------TGPFLRVNLHAFNT----EDEVDILVSVLATYLEKY  351 (370)
T ss_pred             hhHHHHHHHHHHCCeeEEeeCCC------CCCEEEEEcCCCCC----HHHHHHHHHHHHHHHHHh
Confidence            34577888999999998643222      23579999887765    899999999999987643

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.85  E-value=1.7e-19  Score=188.62  Aligned_cols=285  Identities=20%  Similarity=0.218  Sum_probs=184.2

Q ss_pred             hhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccce
Q 010008          135 EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY  214 (520)
Q Consensus       135 ~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~  214 (520)
                      +...++|    +++++++|.+.+     +...||++|+.+++.++++|||+|+++++.|++.+....    ......|  
T Consensus        61 p~~~~Le----~~lA~~~g~~~~-----i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~----~~~~~~g--  125 (388)
T PRK07811         61 PTRTALE----EQLAALEGGAYG-----RAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLID----KVFTRWG--  125 (388)
T ss_pred             ccHHHHH----HHHHHHhCCCce-----EEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHH----HhCcCCC--
Confidence            4466777    678899999863     445899999999999999999999999998876432110    0111123  


Q ss_pred             EEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCC
Q 010008          215 FESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADP  292 (520)
Q Consensus       215 ~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p  292 (520)
                      .++..++      ..|++++++++++ ++|+|+++.|+||+  ..|+++|+++|+++|++||+|+++..+..     ..|
T Consensus       126 i~~~~~d------~~d~e~l~~~i~~-~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~-----~~p  193 (388)
T PRK07811        126 VEYTPVD------LSDLDAVRAAITP-RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYL-----QQP  193 (388)
T ss_pred             eEEEEeC------CCCHHHHHHhcCc-CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCcccc-----CCc
Confidence            2444433      2589999999987 89999999999886  78999999999999999999999766533     234


Q ss_pred             CC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCC-CCCCCChHHHHHHHHHHHHHhcCchhHHHH
Q 010008          293 FK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFP-GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ  367 (520)
Q Consensus       293 ~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p-~~~g~p~~~~iaala~al~~~~~~~~~~~~  367 (520)
                      +. ++|++++|++|++.||.   +|+++++++     ++.+++...... +...+|.    .+ +.++..+  ..+..+.
T Consensus       194 ~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~-----~l~~~~~~~~~~~g~~~s~~----~a-~l~~~~L--~tl~~R~  261 (388)
T PRK07811        194 LALGADVVVHSTTKYIGGHSDVVGGALVTNDE-----ELDEAFAFLQNGAGAVPGPF----DA-YLTLRGL--KTLAVRM  261 (388)
T ss_pred             hhhCCcEEEecCceeecCCCCcEEEEEEECCH-----HHHHHHHHHHHhcCCCCCHH----HH-HHHHhcc--CcHHHHH
Confidence            44 79999999999998874   699988764     565554332111 1111111    11 1223322  2345677


Q ss_pred             HHHHHHHHHHHHHHHH-CCCE-EecCCCC---------------CeeEEEEecCCCCCHHHHHHHHhhcCe---EEcCCC
Q 010008          368 NKVVSNCRALASRLVE-LGYK-LVSGGSD---------------NHLVLVDLRPMGIDGARVEKILDMASI---TLNKNS  427 (520)
Q Consensus       368 ~~i~~na~~l~~~L~~-~G~~-v~~~gt~---------------~~~~~vd~~~~g~~~~~~~~~L~~~gI---~v~~~~  427 (520)
                      ++..+|+..+++.|++ .++. +..++-.               +.++.+++.  + +.+.+.++++...+   .++.+.
T Consensus       262 ~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~--~-~~~~~~~f~~~l~~~~~~~s~G~  338 (388)
T PRK07811        262 DRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLA--G-GEEAARDFCARTKVFTLAESLGG  338 (388)
T ss_pred             HHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeC--C-CHHHHHHHHHhCCcceeeccCCC
Confidence            8888999999999987 3553 3333211               224555553  2 23445555555443   443321


Q ss_pred             ------CCCCC--C-------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          428 ------VPGDK--S-------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       428 ------~Pg~~--~-------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                            .|...  .       ...++-||++..        -||.+.+.+-|.+++.
T Consensus       339 ~~sl~~~~~~~~~~~~~~~~~gi~~~liR~svG--------lE~~~dl~~dl~~al~  387 (388)
T PRK07811        339 VESLIEHPSAMTHASTAGSQLEVPDDLVRLSVG--------IEDVADLLADLEQALG  387 (388)
T ss_pred             CcceEeCCcccCcccCCHhhcCCCCCEEEEEeC--------CCCHHHHHHHHHHHhh
Confidence                  12111  0       112456898864        3677777777766653

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.85  E-value=5e-19  Score=185.84  Aligned_cols=325  Identities=15%  Similarity=0.153  Sum_probs=214.2

Q ss_pred             EecCCCCC----hHHHHHHHhhhhhccCCCCCCCCCCCCcc-hhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHH
Q 010008           98 LIASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGGN-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN  172 (520)
Q Consensus        98 Liasen~~----~~~V~ea~~s~l~~~y~~G~p~~ryy~g~-~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~  172 (520)
                      ...|.+|.    .|.++++....+ .+|..|..+.|...|+ .+..++|    +.+++++|.+..     +..+||..||
T Consensus       106 ~FsSndYLGL~~~p~v~~a~~~ai-~~yG~g~~gSrl~~G~~~~h~~LE----~~LA~f~g~e~a-----ll~sSGy~AN  175 (476)
T PLN02955        106 LFSGNDYLGLSSHPTISNAAANAA-KEYGMGPKGSALICGYTTYHRLLE----SSLADLKKKEDC-----LVCPTGFAAN  175 (476)
T ss_pred             EeeccCccCCCCCHHHHHHHHHHH-HHcCCCCCCcCccccChHHHHHHH----HHHHHHHCCCcE-----EEECChHHHH
Confidence            34577775    688999987765 5676677777766654 4455677    678999999873     5568999999


Q ss_pred             HHHHHhhC--------------CCCCEEEEcCCCCCccccccccccccccccccc--eEEEEEcccCCCCCCCCHHHHHH
Q 010008          173 FEVYTAIL--------------KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI--YFESMPYRLDESTGLVDYDMLEK  236 (520)
Q Consensus       173 ~~~l~all--------------~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~--~~~~v~~~~d~~~~~iD~d~le~  236 (520)
                      ..++.+|.              ..+|.|+.-...|.+.+ .|       +.+...  ..+.+.|+.      -|+++|++
T Consensus       176 ~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~-dG-------~~ls~~~~~a~~~~f~H------ND~~~Le~  241 (476)
T PLN02955        176 MAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASII-DG-------VRLAERQGNVEVFVYRH------CDMYHLNS  241 (476)
T ss_pred             HHHHHHHhhccccccccccccCCCCcEEEEeccchHHHH-HH-------HHhccccCCceEEEeCC------CCHHHHHH
Confidence            99998872              45566766555554322 12       112210  124444443      48899998


Q ss_pred             HhhhcC--CcEEEEc--CCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccc---cccC-CCC-CcccEEEeccCccc
Q 010008          237 TAILFR--PKLIIAG--ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA---SVVA-DPF-KYCDVVTTTTHKSL  307 (520)
Q Consensus       237 ~i~~~~--pklIi~~--~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~---~~~~-~p~-~~aDiv~~S~hK~l  307 (520)
                      +++..+  .++|++.  ++..+...|+++|.++|+++|++|++|+||..|.+..   |... ..+ +..||+++|++|.+
T Consensus       242 ~L~~~~~~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~  321 (476)
T PLN02955        242 LLSSCKMKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAA  321 (476)
T ss_pred             HHHhCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccch
Confidence            886532  3455554  4445558899999999999999999999998886643   2111 111 24689999999997


Q ss_pred             CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCC-hHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCC
Q 010008          308 RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGP-HNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGY  386 (520)
Q Consensus       308 ~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p-~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~  386 (520)
                       |-+||++++++      ++.+.+....-+...++. .....++...+++.+...  ...++++.+|.+++.+.   .|+
T Consensus       322 -G~~GGfi~gs~------~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~--~~~r~~L~~n~~~fr~~---~G~  389 (476)
T PLN02955        322 -GCHGGFIACSK------KWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKE--KWRRKAIWERVKEFKAL---SGV  389 (476)
T ss_pred             -hccCceeecHH------HHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHh---cCC
Confidence             67899999988      566666543223333332 333444444567665433  34567888888887773   366


Q ss_pred             EEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          387 KLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       387 ~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      .+     .++++.+-+... .....+.+.|.+.||.|+.-..|--  |.+...+||++.+.    ++++|++++++.|.+
T Consensus       390 ~~-----~sPI~pI~ig~~-~~a~~~~~~L~~~Gi~v~~i~yPtV--P~g~~rLRi~lsA~----Ht~edId~lv~~L~~  457 (476)
T PLN02955        390 DI-----SSPIISLVVGNQ-EKALKASRYLLKSGFHVMAIRPPTV--PPNSCRLRVTLSAA----HTTEDVKKLITALSS  457 (476)
T ss_pred             CC-----CCCEEEEEeCCH-HHHHHHHHHHHHCCCEEEEECCCCC--CCCCceEEEeeCCC----CCHHHHHHHHHHHHH
Confidence            53     145554444321 1345578889999999976444432  33456799987654    669999999999988


Q ss_pred             HHHH
Q 010008          467 GVEI  470 (520)
Q Consensus       467 ~l~~  470 (520)
                      +...
T Consensus       458 ~~~~  461 (476)
T PLN02955        458 CLDF  461 (476)
T ss_pred             HHhh
Confidence            7654

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.85  E-value=1.2e-18  Score=167.75  Aligned_cols=332  Identities=17%  Similarity=0.140  Sum_probs=230.7

Q ss_pred             ceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHH
Q 010008           96 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV  175 (520)
Q Consensus        96 i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~  175 (520)
                      .-|+++..-+|++|++||..-     ..|+..      .+++.. -+...+-++..|....+..  .|.++||+.+..++
T Consensus        19 ~L~gPGPsnl~~~V~~A~~~~-----~lgh~s------Pe~~qI-m~~v~egikyVFkT~n~~t--f~isgsGh~g~E~a   84 (385)
T KOG2862|consen   19 TLLGPGPSNLSGRVQEAMSRP-----SLGHMS------PEFVQI-MDEVLEGIKYVFKTANAQT--FVISGSGHSGWEAA   84 (385)
T ss_pred             eeecCCCcCCCHHHHHhhcCC-----ccccCC------HHHHHH-HHHHHHHHHHHhccCCCce--EEEecCCcchHHHH
Confidence            367788888999999999643     334433      233333 3345577888998876543  57788999999999


Q ss_pred             HHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC-
Q 010008          176 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP-  254 (520)
Q Consensus       176 l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p-  254 (520)
                      +..++.|||.|++...   |.+++.+..   ..+..|..++++  +.+ ......+++|++.+..++|+++++...... 
T Consensus        85 l~N~lePgd~vLv~~~---G~wg~ra~D---~~~r~ga~V~~v--~~~-~G~~~~le~i~~~lsqh~p~~vfv~hgdsST  155 (385)
T KOG2862|consen   85 LVNLLEPGDNVLVVST---GTWGQRAAD---CARRYGAEVDVV--EAD-IGQAVPLEEITEKLSQHKPKAVFVTHGDSST  155 (385)
T ss_pred             HHhhcCCCCeEEEEEe---chHHHHHHH---HHHhhCceeeEE--ecC-cccCccHHHHHHHHHhcCCceEEEEecCccc
Confidence            9999999999998764   233222211   123446544444  344 346789999999999999999998754333 


Q ss_pred             -CCCC-HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHH
Q 010008          255 -RDFD-YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES  329 (520)
Q Consensus       255 -~~~d-~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~  329 (520)
                       -..| ++.+.++|++|++++++|...+.|....     -++  ++|+..+..+|.|.+|.| +.|..++.      ..+
T Consensus       156 gV~q~~~~~~g~lc~k~~~lllVD~VaSlggt~F-----~mDewgVDvaytgSQKaL~aP~GLsiisfS~k------a~~  224 (385)
T KOG2862|consen  156 GVLQDLLAISGELCHKHEALLLVDTVASLGGTEF-----EMDEWGVDVAYTGSQKALGAPAGLSIISFSDK------ALE  224 (385)
T ss_pred             cccchHHHHHHHHhhcCCeEEEEechhhcCCccc-----eehhhcccEEEecchhhcCCCCCcceeecCHH------HHH
Confidence             3667 6677899999999999998755553311     112  799999999999999999 77776662      222


Q ss_pred             hhcc---------------cCCCC-------CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCE
Q 010008          330 AINN---------------AVFPG-------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYK  387 (520)
Q Consensus       330 ~i~~---------------~~~p~-------~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~  387 (520)
                      +++.               ..|.+       +..+|....+.++.+||..+.+++.++..++.+++++.+...|++.|++
T Consensus       225 ~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~GLq  304 (385)
T KOG2862|consen  225 AIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALGLQ  304 (385)
T ss_pred             HHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            2211               11222       1346778889999999999888889999999999999999999999988


Q ss_pred             EecCCC---CCeeEEEEecCCCCCHHHHHHHHhh-cCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHH
Q 010008          388 LVSGGS---DNHLVLVDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF  463 (520)
Q Consensus       388 v~~~gt---~~~~~~vd~~~~g~~~~~~~~~L~~-~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~  463 (520)
                      ......   ......+.+ +.++|+.++...+.. .++.+..+     -++..+..+|||+...+   -+.+-|+.+.+.
T Consensus       305 ~fv~~e~~rlptvttv~v-p~gvDw~dVv~~~~~~~~vei~gg-----lg~~~gKv~RIGl~gcn---a~~e~i~~v~~l  375 (385)
T KOG2862|consen  305 LFVVDEELRLPTVTTVKV-PYGVDWKDVVAYAMSHYVVEIGGG-----LGPTVGKVFRIGLLGCN---ANVEYIDNVVEL  375 (385)
T ss_pred             ceecChhhccCcceeeec-CCCCCHHHHHHHHHHhcCEEeccc-----cCCCcccEEEEEEeecc---CCcHHHHHHHHH
Confidence            765211   111112333 578899887766654 57776432     24456778999976544   356788888888


Q ss_pred             HHHHHHH
Q 010008          464 IHEGVEI  470 (520)
Q Consensus       464 i~~~l~~  470 (520)
                      ++.++..
T Consensus       376 l~~alq~  382 (385)
T KOG2862|consen  376 LKLALQR  382 (385)
T ss_pred             HHHHHhh
Confidence            8877764

>PLN03032 serine decarboxylase; Provisional

Probab=99.85  E-value=7.3e-19  Score=181.51  Aligned_cols=266  Identities=17%  Similarity=0.134  Sum_probs=186.9

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC--CC
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--KP  182 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all--~p  182 (520)
                      ....+++++...+.+.+  |.|...+..|.. ..++|+.+++++++++|++++++. -+.+++||+||+.++.+..  .+
T Consensus        35 ~~~~~~~~~~~~~~~~~--gnP~s~~~~g~~-a~~~e~~v~~~ia~llg~~~~~~~-G~fTsGGTEaNl~al~~ar~~~~  110 (374)
T PLN03032         35 FDYGELSQLMKYSINNL--GDPFIESNYGVH-SRQFEVGVLDWFARLWELEKDEYW-GYITTCGTEGNLHGILVGREVFP  110 (374)
T ss_pred             cChHHHHHHHHhcccCC--CCCcccCCCCcc-HHHHHHHHHHHHHHHhCCCCccCC-EEEeCchHHHHHHHHHHHHHhCC
Confidence            45567888888877655  777765433333 567888999999999999876531 1334566799998777542  35


Q ss_pred             CCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc--CCcEEEEcCCC--CCCCCC
Q 010008          183 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASA--YPRDFD  258 (520)
Q Consensus       183 GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~--~pklIi~~~s~--~p~~~d  258 (520)
                      +++|+++..+|.+..        +.....|..  +..+++| +++.+|+++|++++++.  +|.+|+++..+  .+...|
T Consensus       111 ~~~vi~s~~~H~Sv~--------kaa~~lg~~--~~~V~~d-~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idp  179 (374)
T PLN03032        111 DGILYASRESHYSVF--------KAARMYRME--AVKVPTL-PSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDD  179 (374)
T ss_pred             CcEEEeCCCceeHHH--------HHHHHcCCC--CeEeeeC-CCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCC
Confidence            668887776654332        233444543  3345566 46899999999999763  46777775333  344889


Q ss_pred             HHHHHHHHHHhC-----CEEEEechhhcccccccccCC--CC-CcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHH
Q 010008          259 YPRMRQIADAVG-----ALLMMDMAHISGLVAASVVAD--PF-KYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES  329 (520)
Q Consensus       259 ~~~i~~ia~~~g-----~~li~D~Ah~~gli~~~~~~~--p~-~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~  329 (520)
                      +++|+++|+++|     +|+++|+|+..+.+.......  .+ .++|.++.|+||++..|.| |+++++++      +.+
T Consensus       180 i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~------~~~  253 (374)
T PLN03032        180 LDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKK------HVK  253 (374)
T ss_pred             HHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcccccCCCcCeEEEEEEch------hhH
Confidence            999999999996     599999998777664321111  12 2589999999998766999 99999883      333


Q ss_pred             hhccc------CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecC
Q 010008          330 AINNA------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG  391 (520)
Q Consensus       330 ~i~~~------~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~  391 (520)
                      .+...      ..++..|+.+-...+++..+|+.....+|.+..++..++++++.+.|.+.|++++..
T Consensus       254 ~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~  321 (374)
T PLN03032        254 ALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEAGLTCRLN  321 (374)
T ss_pred             hhccCCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEC
Confidence            33210      112345665555566777788887777889999999999999999999989887653

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.85  E-value=5.1e-19  Score=182.25  Aligned_cols=324  Identities=15%  Similarity=0.125  Sum_probs=213.4

Q ss_pred             CChHHHHHHHhhhhhccCCCCC--CCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGL--PGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK  181 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~--p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~  181 (520)
                      ..|..|++++.+++.+....|.  +. ......++.+.++ .+++.++++|+.+.+ +.+.+...|||.|+.+++.+++.
T Consensus         2 ~~p~~v~~~~~~~~~~~~~~~~~~~~-~~hr~~~f~~~~~-~~~~~l~~l~~~~~~-~~v~~~~gsgT~a~ea~~~nl~~   78 (349)
T TIGR01364         2 ALPEEVLEQAQKELLNFNGTGMSVME-ISHRSKEFEAVAN-EAESDLRELLNIPDN-YEVLFLQGGATGQFAAVPLNLLA   78 (349)
T ss_pred             CCCHHHHHHHHHHHhCccCCCccccc-cCCCchHHHHHHH-HHHHHHHHHhCCCCC-ceEEEEcCCchHHHHHHHHhcCC
Confidence            4688999999998875332221  11 1133455666665 577899999998432 22445556688999999999999


Q ss_pred             CCCEEEEcCCCCCccccccccccccccccccceEEEEEcccC-CCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC
Q 010008          182 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD  258 (520)
Q Consensus       182 pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d-~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d  258 (520)
                      +||+++++....   +.|.+..   .....|. ...+..+-. +....+|+++++  +++ ++++|.+.+..+++  ..+
T Consensus        79 ~~~~~l~i~~G~---fg~r~~~---~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~v~~th~ETstGv~~~  148 (349)
T TIGR01364        79 EGKVADYIVTGA---WSKKAAK---EAKKYGV-VNVVASGKEGNYTKIPDPSTWE--ISE-DAAYVHYCANETIHGVEFR  148 (349)
T ss_pred             CCCeEEEEECCH---HHHHHHH---HHHHhCC-cEEEeccccCCCCCCCCHHhcC--CCC-CCCEEEEcCCCCcccEecc
Confidence            999999886533   3333311   2233454 344442211 022356777665  334 78999887655554  333


Q ss_pred             HHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhcccC--
Q 010008          259 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAV--  335 (520)
Q Consensus       259 ~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~~~~--  335 (520)
                           ++++.+++++++|+++++|....++     ...|++++|.||+| ||.| |+++.+++      ..+++....  
T Consensus       149 -----~l~~~~~~l~iVDavss~g~~~id~-----~~~d~~~~ssqK~l-gP~Glg~l~~s~~------~~~~~~~~~~~  211 (349)
T TIGR01364       149 -----ELPDVKNAPLVADMSSNILSRPIDV-----SKFGLIYAGAQKNI-GPAGLTVVIVRKD------LLGRASRITPS  211 (349)
T ss_pred             -----eecccCCCeEEEEccccccCccCCH-----HHccEEEEeccccc-CCCceEEEEECHH------HHhhcccCCCC
Confidence                 6777789999999999888764332     23579999999988 6988 99999883      333222110  


Q ss_pred             ---------CCCCCCCChHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHC-CCEEecC--CCCC-eeEEEE
Q 010008          336 ---------FPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVEL-GYKLVSG--GSDN-HLVLVD  401 (520)
Q Consensus       336 ---------~p~~~g~p~~~~iaala~al~~~~~~-~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~--gt~~-~~~~vd  401 (520)
                               .....|+|+.+.+.++..||+.+... ++++..++..+.++++.+.|++. |+.....  ...+ ..+.+.
T Consensus       212 ~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~  291 (349)
T TIGR01364       212 MLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFT  291 (349)
T ss_pred             cchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEe
Confidence                     01124799999999999999998877 68999999999999999999997 6644421  1112 223333


Q ss_pred             ecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          402 LRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       402 ~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +....+ ..++...+.+.||.+    .+|..   ..+.+|+|...+++    ++|++++.++|+++++
T Consensus       292 ~~~~~~-~~~~~~~~~~~Gi~~----~~~~~---~~g~vRvS~~~~nt----~edid~l~~al~~~~~  347 (349)
T TIGR01364       292 LGNEEL-EKRFLKEAEERGLVS----LKGHR---SVGGMRASIYNAMP----LEGVQALVDFMKEFQK  347 (349)
T ss_pred             cCChhH-hHHHHHHHHHCCCcc----cCCcc---ccCeeEEECcCCCC----HHHHHHHHHHHHHHHH
Confidence            332222 245556778899944    23322   24689999876655    8999999999998654

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.85  E-value=3.3e-19  Score=184.51  Aligned_cols=328  Identities=15%  Similarity=0.118  Sum_probs=203.7

Q ss_pred             ceEecCCCCChHHHHHHHhhhhhccCCCCCCCCC-CCCc---chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHH
Q 010008           96 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKR-YYGG---NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA  171 (520)
Q Consensus        96 i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~r-yy~g---~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A  171 (520)
                      ++++++...+|+.|++|+..++.+ |.  .++.- |..+   .++.+.++ .+++.++++||++.++. +.+...|||+|
T Consensus         1 ~~~~pGp~~~p~~V~~a~~~~~~~-~~--~~~rg~~~~~~r~~~~~~~~~-~~r~~l~~l~~~~~~~~-vvf~~gs~T~a   75 (355)
T cd00611           1 INFSAGPAALPEEVLEQAQKELLD-FN--GLGMSVMEMSHRSKDFEAIVN-EAESDLRELLNIPDNYK-VLFLQGGATGQ   75 (355)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHhh-cc--cCCccccccCCCCHHHHHHHH-HHHHHHHHHhCCCCCce-EEEEcCCchHH
Confidence            467888899999999999998754 21  22211 1112   34455555 68899999999843221 22333447799


Q ss_pred             HHHHHHhhCC---CCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCC-HHHHHHHhhhcCCcEEE
Q 010008          172 NFEVYTAILK---PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVD-YDMLEKTAILFRPKLII  247 (520)
Q Consensus       172 ~~~~l~all~---pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD-~d~le~~i~~~~pklIi  247 (520)
                      +.+++.+++.   +||.|+.-      .+.|.+..   .....|..++.+.  .+.+....+ .+..+..+++ ++|+|.
T Consensus        76 ~~~~~~~l~~~~~~~~~i~~g------~~~~~~~~---~a~~~g~~~~~~~--~~~~g~~~~~~~~~~~~~~~-~~~lV~  143 (355)
T cd00611          76 FAAVPLNLLGDKGTADYVVTG------AWSAKAAK---EAKRYGGVVVIVA--AKEEGKYTKIPDVETWDLAP-DAAYVH  143 (355)
T ss_pred             HHHHHHhcCCCCCeEEEEECC------HHHHHHHH---HHHhcCCCcEEEe--cccccCCCCCCCHhhcCCCC-CCCEEE
Confidence            9999999987   55555431      12221100   0122344333333  332111224 2222333555 899998


Q ss_pred             EcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhh
Q 010008          248 AGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVE  326 (520)
Q Consensus       248 ~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~  326 (520)
                      +.+..+.+-..+   .++++.+|+++++|++|++|....++.     ..|++++|.||+| ||.| |+++++++      
T Consensus       144 ~~h~~t~tG~~~---~~i~~~~g~~~~VDa~qs~g~~~idv~-----~~~~~~ss~~K~l-GP~G~g~l~~~~~------  208 (355)
T cd00611         144 YCSNETIHGVEF---DEVPDTGGVPLVADMSSNILSRPIDVS-----KFGVIYAGAQKNL-GPAGVTVVIVRKD------  208 (355)
T ss_pred             EeCCcccccEEc---ceecccCCCeEEEEccccccCCCCCHH-----HhCEEEeeccccc-CCCceEEEEECHH------
Confidence            876655541112   255666999999999999987744332     2456777799976 7998 99999883      


Q ss_pred             HHHhhccc-----------CCCCCCCCChHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHC-CCE-EecC-
Q 010008          327 LESAINNA-----------VFPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVEL-GYK-LVSG-  391 (520)
Q Consensus       327 l~~~i~~~-----------~~p~~~g~p~~~~iaala~al~~~~~~-~~~~~~~~i~~na~~l~~~L~~~-G~~-v~~~-  391 (520)
                      +.+++...           ......|+|+.+.+.++..|++.+... +++...++..+.++++.+.|.+. |+. .... 
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~  288 (355)
T cd00611         209 LLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDK  288 (355)
T ss_pred             HHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCH
Confidence            33322211           001125899999999999999998877 68888999999999999999986 852 2111 


Q ss_pred             CCCCeeEEEEecCCCC-CHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          392 GSDNHLVLVDLRPMGI-DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       392 gt~~~~~~vd~~~~g~-~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      ..... .++.+...++ ...+....+.+.|+.+    .+++.   ..+.+|+|+..+++    ++|++++.++++++
T Consensus       289 ~~rs~-~vvsf~~~~~~l~~~~~~~~~r~G~~~----~~~~~---~~g~vR~S~~~~nt----~edi~~l~~al~~~  353 (355)
T cd00611         289 RARSR-MNVPFRLGKEELEKEFLKEAEAAGMIG----LKGHR---SVGGIRASIYNALS----LEGVQALADFMKEF  353 (355)
T ss_pred             HHcCc-eEEEEEcCChhhhHHHHHHHHHCCCcc----cCCCc---ccCeEEEEccCCCC----HHHHHHHHHHHHHH
Confidence            11121 2233332232 1133435677799964    23332   23689999987765    89999999998874

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.85  E-value=1.6e-19  Score=188.15  Aligned_cols=290  Identities=16%  Similarity=0.148  Sum_probs=188.0

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      |++..+.+|    ++++++.|.+.     .+...+|++|+.+++.++++|||+|+++++.|++.+....      .....
T Consensus        51 ~npt~~~Le----~~lA~leg~e~-----ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~------~~~~~  115 (388)
T PRK08861         51 GNPNRGLLE----QTLSELESGKG-----AVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFN------TRANK  115 (388)
T ss_pred             CCchHHHHH----HHHHHHhCCCe-----EEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHH------HHHhc
Confidence            456677787    67889999753     2444566699999999999999999999998876532110      00111


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .++++..++      ..|++++++++++ +||+|+++.|+||+  ..|+++|.++|+++|+++++|+++..++.     .
T Consensus       116 ~gi~v~~vd------~~d~e~l~~~i~~-~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~-----~  183 (388)
T PRK08861        116 GDFKVQFVD------QSDAAALDAALAK-KPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVL-----Q  183 (388)
T ss_pred             CCeEEEEEC------CCCHHHHHHhcCc-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccccc-----C
Confidence            124555543      2589999999987 89999999999986  88999999999999999999999876643     3


Q ss_pred             CCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  366 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~  366 (520)
                      .|+. ++|++++|+||++.|+.   ||+++++++     ++.+++.....  ..|......-+.  ..++.+.  -+..+
T Consensus       184 ~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~-----~~~~~~~~~~~--~~G~~~~p~~a~--l~~rgl~--Tl~lR  252 (388)
T PRK08861        184 KPLELGADFVIHSTTKYINGHSDVIGGVLITKTK-----EHAEELAWWGN--CIGATGTPFDSY--MTLRGIR--TLGAR  252 (388)
T ss_pred             CCcccCCCEEEeecceeccCCCcceeEEEEecHH-----HHHHHHHHHHh--ccCCCCChHHHH--HHHhcCC--CHHHH
Confidence            4555 79999999999999875   698888764     55555542211  112211111111  2233332  34567


Q ss_pred             HHHHHHHHHHHHHHHHHC-CC-EEecCCCC---------------CeeEEEEecCCCCCHHHHHHHHhhcC---eEEcCC
Q 010008          367 QNKVVSNCRALASRLVEL-GY-KLVSGGSD---------------NHLVLVDLRPMGIDGARVEKILDMAS---ITLNKN  426 (520)
Q Consensus       367 ~~~i~~na~~l~~~L~~~-G~-~v~~~gt~---------------~~~~~vd~~~~g~~~~~~~~~L~~~g---I~v~~~  426 (520)
                      +++..+|+..+++.|++. .+ +|..++-.               +.++.+++.  + +.+.+.++++...   +.++.+
T Consensus       253 ~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~--~-~~~~~~~f~~~l~l~~~~~s~G  329 (388)
T PRK08861        253 MRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFA--G-SFEQLKVFVKALALFSLAESLG  329 (388)
T ss_pred             HHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeC--C-CHHHHHHHHhcCCcceEccCCC
Confidence            889999999999999884 33 33333211               224445553  2 3344555555443   344432


Q ss_pred             C------CCCCCC------------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          427 S------VPGDKS------------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       427 ~------~Pg~~~------------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      .      .|-..+            ...++-||++..        -||.+.+.+-|.++++..
T Consensus       330 ~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG--------lE~~~dli~Dl~~al~~~  384 (388)
T PRK08861        330 GVESLICHPASMTHRAMGEEALAEAGVSQQLLRLSVG--------LEDAQDLIADLDQAFAKA  384 (388)
T ss_pred             CCcceeeCCCcccccccCHHHHHhcCCCCCeEEEEeC--------cCCHHHHHHHHHHHHHHH
Confidence            1      121110            012356898754        367888888888877643

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.85  E-value=1.3e-19  Score=190.07  Aligned_cols=215  Identities=20%  Similarity=0.198  Sum_probs=148.9

Q ss_pred             chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccc
Q 010008          134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  213 (520)
Q Consensus       134 ~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~  213 (520)
                      ++..+.+|    +++++++|++++    . .+.||+.|+..++.++++|||+|+++++.|+++.....    ......|.
T Consensus        64 ~p~~~~Le----~~lA~l~G~~~~----~-~~~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~----~~~~~~G~  130 (398)
T PRK07504         64 NPTVDMFE----KRMCALEGAEDA----R-ATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVE----TLLPRYGI  130 (398)
T ss_pred             CchHHHHH----HHHHHHhCCCee----e-EecCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHH----HHHhhcCe
Confidence            45567777    678899999874    2 35799999998888899999999999988876532110    00112233


Q ss_pred             eEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCC
Q 010008          214 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD  291 (520)
Q Consensus       214 ~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~  291 (520)
                        ++..++      .+|++++++++++ +||+|++++|+||+  ..|+++|.++|+++|+++++|++|..+..     ..
T Consensus       131 --~v~~vd------~~d~e~l~~ai~~-~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~-----~~  196 (398)
T PRK07504        131 --ESTLVD------GLDLDNWEKAVRP-NTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLF-----QK  196 (398)
T ss_pred             --EEEEEC------CCCHHHHHHhcCc-CceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCcccccc-----CC
Confidence              554532      3789999999987 89999999999986  78999999999999999999999876643     23


Q ss_pred             CCC-cccEEEeccCcccCCC--C-ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHH
Q 010008          292 PFK-YCDVVTTTTHKSLRGP--R-GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ  367 (520)
Q Consensus       292 p~~-~aDiv~~S~hK~l~Gp--r-gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~  367 (520)
                      ++. ++|++++|+||++.|+  + ||+++++++     .+.+++.....  ..|.......+++  ++..+  ..+....
T Consensus       197 ~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~-----~i~~~~~~~~~--~~g~~~s~~~A~~--~l~~L--~tl~~R~  265 (398)
T PRK07504        197 PLELGAHIVVYSATKHIDGQGRCLGGVVLSDKA-----WIEEHLQDYFR--HTGPSLSPFNAWT--LLKGL--ETLPVRV  265 (398)
T ss_pred             chhhCCCEEEeeccccccCCccceEEEEEeCcH-----HHHHHHHHHHH--HhCCCCCHHHHHH--HHhcc--chHHHHH
Confidence            444 7999999999999654  4 478888773     23222321111  1122111222222  23332  2346677


Q ss_pred             HHHHHHHHHHHHHHHHC-CC
Q 010008          368 NKVVSNCRALASRLVEL-GY  386 (520)
Q Consensus       368 ~~i~~na~~l~~~L~~~-G~  386 (520)
                      ++..+|++.+++.|.+. ++
T Consensus       266 ~~~~~na~~la~~L~~~p~v  285 (398)
T PRK07504        266 RQQTESAAAIADFLAGHPKV  285 (398)
T ss_pred             HHHHHHHHHHHHHHHcCCCc
Confidence            88889999999999873 44

>PRK04311 selenocysteine synthase; Provisional

Probab=99.85  E-value=8.5e-19  Score=185.78  Aligned_cols=319  Identities=18%  Similarity=0.208  Sum_probs=201.1

Q ss_pred             CCCCChHHHHHHHhhhhhccCCC-CC---CCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHH
Q 010008          101 SENFTSRAVMEAVGSCLTNKYSE-GL---PGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY  176 (520)
Q Consensus       101 sen~~~~~V~ea~~s~l~~~y~~-G~---p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l  176 (520)
                      +-.++|+.+++++...+.+ |.. .|   .+.+   | +..+.+|    +.+++++|++.     .+.++||+.|+..++
T Consensus        94 g~s~l~~~v~eav~~~~~~-~~~le~~l~~g~~---g-~r~~~~e----~~lA~l~Gae~-----a~vv~sgtaAl~l~l  159 (464)
T PRK04311         94 GRALLSEAAIEAVTEAARG-YSNLEYDLATGKR---G-SRDRALA----ALLCALTGAED-----ALVVNNNAAAVLLAL  159 (464)
T ss_pred             CCCCCCHHHHHHHHHHHhc-ccccccchhhccc---c-hHHHHHH----HHHHHHhCCCe-----EEEECCHHHHHHHHH
Confidence            4457899999999888754 321 11   1111   2 2234444    78899999985     244688999998888


Q ss_pred             HhhCCCCCEEEEcCCCC---CccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC
Q 010008          177 TAILKPHDRIMGLDLPH---GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  253 (520)
Q Consensus       177 ~all~pGD~Vl~~~~~~---~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~  253 (520)
                      .+ +.+||+|++++.++   ||.+...     ..+...|.  +++.++.+   ...+++++++++++ +|++|++.+++|
T Consensus       160 ~~-l~~GdeVIvs~~e~~~~ggs~~i~-----~~~~~~G~--~l~~v~~~---~~t~~~dle~aI~~-~TklV~~vh~sN  227 (464)
T PRK04311        160 NA-LAAGKEVIVSRGELVEIGGAFRIP-----DVMRQAGA--RLVEVGTT---NRTHLRDYEQAINE-NTALLLKVHTSN  227 (464)
T ss_pred             HH-hCCCCEEEEcchhhhhcCcchhhH-----HHHHHCCc--EEEEECCC---CCCCHHHHHHhcCc-cCeEEEEEcCCC
Confidence            65 58999999987543   2221110     11223454  66665543   34689999999988 899998876655


Q ss_pred             C------CCCCHHHHHHHHHHhCCEEEEechhhccccc----cc--ccC---CCCC-cccEEEeccCcccCCCCceEEEe
Q 010008          254 P------RDFDYPRMRQIADAVGALLMMDMAHISGLVA----AS--VVA---DPFK-YCDVVTTTTHKSLRGPRGGMIFF  317 (520)
Q Consensus       254 p------~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~----~~--~~~---~p~~-~aDiv~~S~hK~l~GprgG~I~~  317 (520)
                      +      ...|+++|+++|+++|+++++|.+  +|.+.    .+  ..+   .++. ++|++++|+||+|+||.+|+|++
T Consensus       228 ~~i~G~~~~~dl~eI~~lak~~gi~vivD~g--sG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~~G~i~g  305 (464)
T PRK04311        228 YRIEGFTKEVSLAELAALGKEHGLPVVYDLG--SGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQAGIIVG  305 (464)
T ss_pred             ccccccCCcCCHHHHHHHHHHcCCeEEEECC--CcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCceEEEEE
Confidence            4      267999999999999999999985  33321    11  111   2233 79999999999999999999999


Q ss_pred             eCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCch-----------hHHHHHHHHHHHHHHHHHHHHC--
Q 010008          318 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPE-----------FKVYQNKVVSNCRALASRLVEL--  384 (520)
Q Consensus       318 ~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~-----------~~~~~~~i~~na~~l~~~L~~~--  384 (520)
                      ++      ++.+++.+....-.. ...-..++++...+.....++           +....++..++++.+++.|...  
T Consensus       306 ~~------~li~~l~~~~~~r~l-r~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~  378 (464)
T PRK04311        306 KK------ELIARLKKHPLKRAL-RVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALG  378 (464)
T ss_pred             cH------HHHHHHhhchhHHHH-hcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccC
Confidence            87      666665531100000 001124555555555333221           1122377778999999999874  


Q ss_pred             -CC--EEec------CCCCC----eeEEEEecCCCCCHHHHHHHHhhcC--eEEcCCCCCCCCCCCCCCEEEEccCCccc
Q 010008          385 -GY--KLVS------GGSDN----HLVLVDLRPMGIDGARVEKILDMAS--ITLNKNSVPGDKSALVPGGIRIGSPAMTT  449 (520)
Q Consensus       385 -G~--~v~~------~gt~~----~~~~vd~~~~g~~~~~~~~~L~~~g--I~v~~~~~Pg~~~~~~~~giRig~~~~tt  449 (520)
                       ++  .++.      +|+..    .-+.+.+.+.+.+...+++.|++..  |.++.          ..+.+.+-     -
T Consensus       379 ~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~~~~~~~l~~~lr~~~~~i~~r~----------~~~~~~ld-----~  443 (464)
T PRK04311        379 AAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPKDRSLEALAARLRLLPPPVIGRI----------EDGRLLLD-----L  443 (464)
T ss_pred             CCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCCCCCHHHHHHHHhcCCCCEEEEE----------ECCEEEEE-----e
Confidence             23  3442      22211    1123455555678889999998744  44421          12344443     2


Q ss_pred             cCCCHHHHHHHHHHHHHHHH
Q 010008          450 RGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       450 ~g~~~~d~~~la~~i~~~l~  469 (520)
                      |.+.++|++.+++.+.+++.
T Consensus       444 r~~~~~~~~~~~~~~~~~~~  463 (464)
T PRK04311        444 RTLEEEDEERLAAALLEALN  463 (464)
T ss_pred             CcCCHHHHHHHHHHHHHHhh
Confidence            45778999999999988753

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.85  E-value=3.4e-19  Score=184.59  Aligned_cols=327  Identities=12%  Similarity=0.031  Sum_probs=209.7

Q ss_pred             ceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHH
Q 010008           96 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV  175 (520)
Q Consensus        96 i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~  175 (520)
                      ..+++++..+++.|++++......-.   +++   +.+.++.+.++ .+++.+++++|++.+ +.+-+...|||.++.++
T Consensus         5 ~~f~pGP~~~~~~v~~a~~~~~~~~~---~~~---hr~~~f~~~~~-~~r~~l~~l~~~~~~-~~v~f~~gs~T~a~~~~   76 (361)
T TIGR01366         5 GRFGSGPSKVRLEQLQALTTTAASLF---GTS---HRQAPVKNLVG-RVREGLAELFSLPDG-YEVILGNGGATAFWDAA   76 (361)
T ss_pred             CcccCCCcCCCHHHHHHHHhcCcccc---ccC---cCChHHHHHHH-HHHHHHHHHhCCCCC-ceEEEECCchhHHHHHH
Confidence            45778888899999999874210000   112   22345666666 578999999999543 21222235578999999


Q ss_pred             HHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC
Q 010008          176 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR  255 (520)
Q Consensus       176 l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~  255 (520)
                      +.+++.+ +.+++..-.++..+.|...    .....+ ....+.  .+ ....++.     .+.+ ++|+|++.+..+.+
T Consensus        77 ~~~l~~~-~~l~i~~G~~~~~~~~~a~----~~~~~~-~~~~~~--~~-~~~~~~~-----~~~~-~~~lV~~~h~et~t  141 (361)
T TIGR01366        77 TFGLIEK-KSLHLSFGEFSSKFAKAVK----LAPWLG-EPIIVT--AD-PGSAPEP-----QADP-GVDVIAWAHNETST  141 (361)
T ss_pred             HHhcccc-cccEEecCHHHHHHHHHHH----hhhccC-CceEEe--cC-CCCCCCC-----ccCC-CCCEEEEcccCCcc
Confidence            9998743 2222222223222211110    000112 123333  32 2333443     2344 79999888554443


Q ss_pred             --CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhc
Q 010008          256 --DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAIN  332 (520)
Q Consensus       256 --~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~  332 (520)
                        ..|+++|   ++++|+++++|+++++|....++.     .+|++++|.||+|++|.| ++++.+++      +.+++.
T Consensus       142 G~~~pi~~I---~~~~g~~~iVDavqs~g~~~idv~-----~~D~~~~s~~K~lg~~~Gl~~~~~s~~------~~~~~~  207 (361)
T TIGR01366       142 GVAVPVRRP---EGSDDALVVIDATSGAGGLPVDIA-----ETDVYYFAPQKNFASDGGLWLAIMSPA------ALERIE  207 (361)
T ss_pred             ceecccccc---cccCCCeEEEEcCccccCCCCCHH-----HCCEEEEEchhhcCCCCceEEEEECHH------HHhhhh
Confidence              7788776   688999999999999887644332     379999999999987766 44455662      322222


Q ss_pred             c--------------------cCCCCCCCCChHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHCC-CEEec
Q 010008          333 N--------------------AVFPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELG-YKLVS  390 (520)
Q Consensus       333 ~--------------------~~~p~~~g~p~~~~iaala~al~~~~~~-~~~~~~~~i~~na~~l~~~L~~~G-~~v~~  390 (520)
                      .                    ..-.+..++|+.+.+.++..+++.+... +++...++..+.++++.++|.+.+ ++++.
T Consensus       208 ~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~  287 (361)
T TIGR01366       208 AIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFV  287 (361)
T ss_pred             cccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence            1                    1112446788888898999999988766 477778899999999999999876 55543


Q ss_pred             CCC--CC-eeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          391 GGS--DN-HLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       391 ~gt--~~-~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      .+.  .+ ....+.+ +.+++.+++...|++.||.+..+.     .....+.+|||+..+++    ++|+++++++|+++
T Consensus       288 ~~~~~~s~~v~~v~~-~~g~~~~~v~~~L~~~gI~i~~~~-----~~l~~~~vRis~~~~~t----~~di~~l~~al~~~  357 (361)
T TIGR01366       288 TDPGKRSQVVGTIDF-VDDIDAATVAKILRANGIVDTEPY-----RKLGRNQLRVAMFPAID----PDDVEALTECVDWV  357 (361)
T ss_pred             CChhhcccceEEEEC-CCccCHHHHHHHHHHCCCeeccCc-----cccCCCcEEEEcCCCCC----HHHHHHHHHHHHHH
Confidence            211  11 1234455 467888899999999999984321     12334579999987765    89999999999987


Q ss_pred             HH
Q 010008          468 VE  469 (520)
Q Consensus       468 l~  469 (520)
                      ++
T Consensus       358 ~~  359 (361)
T TIGR01366       358 VE  359 (361)
T ss_pred             Hh
Confidence            65

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.85  E-value=4.6e-19  Score=182.19  Aligned_cols=306  Identities=17%  Similarity=0.126  Sum_probs=199.6

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      +.|+|..++|+  +|+.+++++.+.+......+||..    |   ...++    +.+++++|++++    +|.+++|+ +
T Consensus        19 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~----g---~~~lr----~~ia~~~~~~~~----~I~~t~G~~~   83 (337)
T PRK03967         19 YRIWLDKNENPFDLPEELKEEIFEELKRVPFNRYPHI----T---SDPLR----EAIAEFYGLDAE----NIAVGNGSDE   83 (337)
T ss_pred             ceEEecCCCCCCCCCHHHHHHHHHHhhcCccccCCCC----C---HHHHH----HHHHHHhCcCcc----eEEEcCCHHH
Confidence            45788777765  578899998877643222345421    2   22333    667788898876    56678998 7


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  250 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~  250 (520)
                      ++..++.++  +||+|++++|.|+.+.        ......|.  ++++++++ +++.+|++.+++.. . ++|++++++
T Consensus        84 ~l~~~~~~~--~gd~V~v~~P~y~~~~--------~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~~-~-~~~~v~~~~  148 (337)
T PRK03967         84 LISYLVKLF--EGKHIVITPPTFGMYS--------FYAKLNGI--PVIDVPLK-EDFTIDGERIAEKA-K-NASAVFICS  148 (337)
T ss_pred             HHHHHHHHh--CCCeEEEeCCChHHHH--------HHHHHcCC--eEEEeecC-CCCCcCHHHHHHhc-c-CCCEEEEeC
Confidence            877776665  8999999999775321        12234454  66666666 35789999998865 3 689998999


Q ss_pred             CCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cc-cEEEeccCccc--CCCCceEEEeeCCCcch
Q 010008          251 SAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YC-DVVTTTTHKSL--RGPRGGMIFFKKDPVLG  324 (520)
Q Consensus       251 s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~a-Div~~S~hK~l--~GprgG~I~~~~~~~~~  324 (520)
                      |+||+  ..+.++|.++++ +|+++|+|+++. .+.... ....+. .. -+++.|++|++  +|.|.||+++++     
T Consensus       149 P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~-~~~~~~-~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~-----  220 (337)
T PRK03967        149 PNNPTGNLQPEEEILKVLE-TGKPVVLDEAYA-EFSGKS-LIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANE-----  220 (337)
T ss_pred             CCCCCCCCCCHHHHHHHHh-cCCEEEEECchh-hhcccc-hHHHHhhCCCEEEEecchHhhcchhhhheeeecCH-----
Confidence            99997  788999999995 699999999954 333111 000011 11 27789999986  789999999987     


Q ss_pred             hhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecC
Q 010008          325 VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRP  404 (520)
Q Consensus       325 ~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~  404 (520)
                       ++.+.+.....+.  +. +.....+...+++.  ...+.+..+.+.++++.+.+.|.+..   ..+  ...++|+++. 
T Consensus       221 -~~i~~~~~~~~~~--~~-~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~---~~~--~~~~~~~~~~-  288 (337)
T PRK03967        221 -EIIDALYRIKPPF--SL-NILTMKIVRLALDH--YDLIEERIDYIIKERERVRRELGEYA---YPS--DANFLLLKLD-  288 (337)
T ss_pred             -HHHHHHHhhcCCC--CC-CHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHhccCc---CCC--CCcEEEEhHH-
Confidence             6777666543322  22 22233333333432  12334555666777778888886542   222  3455666542 


Q ss_pred             CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          405 MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       405 ~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                             +.+.|.+.||.+...  ++    ...+++||++.       +.++.+++.+.|+++..
T Consensus       289 -------~~~~l~~~gi~v~~~--~~----~~~~~~Ri~~~-------~~~~~~~l~~~l~~~~~  333 (337)
T PRK03967        289 -------AYDYLLENGIVVRKL--SG----RLEGHIRVTVG-------KREENDEFIKALKEIKE  333 (337)
T ss_pred             -------HHHHHHHCCEEEEeC--CC----CCCCeEEEecC-------CHHHHHHHHHHHHHHHH
Confidence                   557777889999642  21    23568999864       25788999999987654

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.84  E-value=1.7e-19  Score=189.31  Aligned_cols=291  Identities=16%  Similarity=0.198  Sum_probs=187.9

Q ss_pred             chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccc
Q 010008          134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  213 (520)
Q Consensus       134 ~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~  213 (520)
                      ++...++|    +.+++++|.+.     .+.+.||+.|+.+++.++++|||+|+++++.|++.+....    ..+...|.
T Consensus        63 ~p~~~~Le----~~iA~~~g~~~-----~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~----~~~~~~G~  129 (400)
T PRK06234         63 NPTSTEVE----NKLALLEGGEA-----AVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLN----HGLTRYGV  129 (400)
T ss_pred             CccHHHHH----HHHHHHhCCCc-----EEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHH----HHHhhCCe
Confidence            34566777    67888999763     3566889999999999999999999999988765432110    11233454


Q ss_pred             eEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHh--CCEEEEechhhccccccccc
Q 010008          214 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVV  289 (520)
Q Consensus       214 ~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~--g~~li~D~Ah~~gli~~~~~  289 (520)
                        +++.++.      .|++++++++++ ++|+|+++.|+||+  ..|+++|.++|+++  |+++++|+++..+..     
T Consensus       130 --~v~~vd~------~d~e~l~~~i~~-~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~-----  195 (400)
T PRK06234        130 --EVTFVDT------SNLEEVRNALKA-NTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYI-----  195 (400)
T ss_pred             --EEEEECC------CCHHHHHHHhcc-CCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhc-----
Confidence              5556543      289999999987 89999999999987  78999999999997  999999999766533     


Q ss_pred             CCCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHH
Q 010008          290 ADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV  365 (520)
Q Consensus       290 ~~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~  365 (520)
                      ..++. ++|++++|++|++.|+.   +|++++++      ++.+++.........|.......+++  .+..+  ..+..
T Consensus       196 ~~~l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~------~~~~~l~~~~~~~~~g~~l~p~~a~l--~~~~l--~tl~~  265 (400)
T PRK06234        196 QRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKE------EFINQVKLFGIKDMTGSVIGPFEAFL--IIRGM--KTLQI  265 (400)
T ss_pred             CCchhhCCcEEEeeccccccCCCCceeEEEEecH------HHHHHHHHHHHHHhcCCCCCHHHHHH--HHhcc--CcHHH
Confidence            23444 68999999999997643   59999987      56665542111111222122222222  22322  23456


Q ss_pred             HHHHHHHHHHHHHHHHHHC-CC-EEecCC---------------CCCeeEEEEecCCCC-CHHHHHHHHhhcCeEEcCCC
Q 010008          366 YQNKVVSNCRALASRLVEL-GY-KLVSGG---------------SDNHLVLVDLRPMGI-DGARVEKILDMASITLNKNS  427 (520)
Q Consensus       366 ~~~~i~~na~~l~~~L~~~-G~-~v~~~g---------------t~~~~~~vd~~~~g~-~~~~~~~~L~~~gI~v~~~~  427 (520)
                      ..++..+|++.+++.|++. .+ .+..++               ..++++.+++.. +. ....+.+.|+-.++.++.+.
T Consensus       266 r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~-~~~~~~~f~~~l~~~~~~~s~G~  344 (400)
T PRK06234        266 RMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKG-GVEEGKVVMNNVKLATLAVSLGD  344 (400)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecC-cHHHHHHHHHhCCcceEeccCCC
Confidence            7788889999999999873 33 222222               123455556542 11 12335555666666666542


Q ss_pred             ------CCCCCC------------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          428 ------VPGDKS------------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       428 ------~Pg~~~------------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                            .|...+            ...++-||++..        -||.+.+.+-+.+++..
T Consensus       345 ~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svG--------lE~~~dl~~dl~~al~~  397 (400)
T PRK06234        345 AETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVG--------LEDVDDIIADLKQALDL  397 (400)
T ss_pred             CCceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeC--------CCCHHHHHHHHHHHHHH
Confidence                  132110            012356898864        36777777777777753

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.84  E-value=8.5e-19  Score=185.34  Aligned_cols=340  Identities=14%  Similarity=0.083  Sum_probs=199.6

Q ss_pred             ccceEecCCCC-C---hHHHHHHHhhhhhcc-CC---CCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceee
Q 010008           94 KSLELIASENF-T---SRAVMEAVGSCLTNK-YS---EGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNV  163 (520)
Q Consensus        94 ~~i~Liasen~-~---~~~V~ea~~s~l~~~-y~---~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V  163 (520)
                      +.|+|..+... .   .+.+.+++...+... +.   .+|+.      ......+.+...+++.+.+|.  +++    +|
T Consensus        31 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~------~~G~~~LR~aia~~~~~~~g~~v~~~----~I  100 (416)
T PRK09440         31 GAIMLGGGNPAHIPEMEDYFRDLLADLLASGKLTEALGNYDG------PQGKDELIEALAALLNERYGWNISPQ----NI  100 (416)
T ss_pred             CceeccCCCCCccCCHHHHHHHHHHHHhcCcccccccccCCC------CCCCHHHHHHHHHHHHHHhCCCCChh----hE
Confidence            45788755432 2   235666766555432 10   12332      121234555555778777775  444    67


Q ss_pred             ecCChH-HHHHHHHHhhCC-----CCCEEEE-cCCCCCccccccccccccccccccceEEEEEcccCCC--CCCCCHHHH
Q 010008          164 QPLSGS-PANFEVYTAILK-----PHDRIMG-LDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--TGLVDYDML  234 (520)
Q Consensus       164 ~~~sGs-~A~~~~l~all~-----pGD~Vl~-~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~--~~~iD~d~l  234 (520)
                      .+++|+ +|+..++.++++     |||.|++ .+|+|.++......  . . .+.+....++  +++.+  .+.+|++++
T Consensus       101 ~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~--~-~-~~~~~~~~~~--~~~~~~~~~~~d~~~l  174 (416)
T PRK09440        101 ALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLE--E-D-LFVSYRPNIE--LLPEGQFKYHVDFEHL  174 (416)
T ss_pred             EEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhc--c-C-ceeecccccc--cccccccccCCCHHHc
Confidence            789999 899999999985     6999999 69988765321100  0 0 0111111222  23322  257999998


Q ss_pred             HHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCC--CC-CcccEEEeccCcc
Q 010008          235 EKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PF-KYCDVVTTTTHKS  306 (520)
Q Consensus       235 e~~i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~--p~-~~aDiv~~S~hK~  306 (520)
                      +  +.. ++++++++.|+||+  ..+   +++|.++|+++|++||+|+++.. .........  +. ..--|++.|++|+
T Consensus       175 ~--~~~-~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~-~~~~~~~~~~~~~~~~~vI~~~SfSK~  250 (416)
T PRK09440        175 H--IDE-DTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGP-PFPGIIFSEATPLWNPNIILCMSLSKL  250 (416)
T ss_pred             c--cCC-CceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccc-cCCCcchhhcCccccCCeEEEeccccc
Confidence            7  344 78999999999997  444   66788889999999999999632 111000000  10 0112778999997


Q ss_pred             -cCCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHH-----HHHHHHHHHHHHHHH
Q 010008          307 -LRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV-----YQNKVVSNCRALASR  380 (520)
Q Consensus       307 -l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~-----~~~~i~~na~~l~~~  380 (520)
                       ++|.|.||+++++      ++.+++.........+.+...+.++ +.++.   ..++..     ..+.+.++++.+.+.
T Consensus       251 ~~pGlRiG~~i~~~------~l~~~~~~~~~~~~~~~s~~~q~~~-~~~l~---~~~~~~~~~~~~~~~~~~r~~~~~~~  320 (416)
T PRK09440        251 GLPGVRCGIVIADE------EIIEALSNMNGIISLAPGRLGPAIA-AEMIE---SGDLLRLSETVIRPFYRQKVQLAIAL  320 (416)
T ss_pred             CCCcceEEEEeCCH------HHHHHHHHHHHHhccCCCcHHHHHH-HHHhc---cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence             4889999999987      6666665433222222223333332 33333   222322     233345556666677


Q ss_pred             HHH----CCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCC--CCCCC--CCCCEEEEccCCccccCC
Q 010008          381 LVE----LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVP--GDKSA--LVPGGIRIGSPAMTTRGF  452 (520)
Q Consensus       381 L~~----~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~P--g~~~~--~~~~giRig~~~~tt~g~  452 (520)
                      |.+    .++.+..+ ..+.++|+++...+++..++.+.|.++||.+..+...  +....  ...+++||++..      
T Consensus       321 L~~~l~~~~~~~~~p-~gg~fiw~~~~~~~~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~------  393 (416)
T PRK09440        321 LRRYLPDEPCLIHKP-EGAIFLWLWFKDLPITTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQ------  393 (416)
T ss_pred             HHHhcccCCeEEecC-CCceEEEEECCCCCCCHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEecC------
Confidence            755    24554333 2356778888643456677778888999999543211  11000  013589998642      


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q 010008          453 SEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       453 ~~~d~~~la~~i~~~l~~  470 (520)
                      +++++++..+.|.+++..
T Consensus       394 ~~~~l~~~i~~l~~~~~~  411 (416)
T PRK09440        394 DDEEIEKGIAILAEEVEK  411 (416)
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            378999999988887754

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.84  E-value=1.8e-20  Score=193.64  Aligned_cols=265  Identities=19%  Similarity=0.258  Sum_probs=178.1

Q ss_pred             HHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEccc
Q 010008          144 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL  222 (520)
Q Consensus       144 a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~  222 (520)
                      +++.+++.||++...     ..++|| .+|.++++++++|||+|++...+|-+.+ |       .+.+.|.  .+++++.
T Consensus        71 Ae~~aA~~fGAd~t~-----flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~-~-------alil~ga--~Pvyi~p  135 (417)
T PF01276_consen   71 AEELAARAFGADKTF-----FLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVY-N-------ALILSGA--IPVYIPP  135 (417)
T ss_dssp             HHHHHHHHHTESEEE-----EESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHH-H-------HHHHHTE--EEEEEEE
T ss_pred             HHHHHHHhcCCCeEE-----EEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHH-H-------HHHHcCC--eEEEecC
Confidence            447889999999752     347888 8999999999999999999988776543 1       3445565  5555433


Q ss_pred             -CCCC---CCCCH-----HHHHHHhhhcC----CcEEEEcCCCCCC-CCCHHHHHHHHHHhCCEEEEechhhcccccccc
Q 010008          223 -DEST---GLVDY-----DMLEKTAILFR----PKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASV  288 (520)
Q Consensus       223 -d~~~---~~iD~-----d~le~~i~~~~----pklIi~~~s~~p~-~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~  288 (520)
                       +++.   +.+++     +.|+++++++.    ++++++.+|+|-+ ..|+++|.++|+++|++|++|+||++.+.+...
T Consensus       136 ~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~l  215 (417)
T PF01276_consen  136 EDNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTYYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPL  215 (417)
T ss_dssp             EE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGG
T ss_pred             CccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCCCeEEECHHHHHHHhcccCCEEEEEccccccccCCCC
Confidence             2222   24677     99999998732    3458888998877 789999999999999999999999988766654


Q ss_pred             cCCCCC-ccc-------EEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc
Q 010008          289 VADPFK-YCD-------VVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ  359 (520)
Q Consensus       289 ~~~p~~-~aD-------iv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~  359 (520)
                      ..+.+. ++|       +++.|+||++++... ++|..+.+...   -.++++....-....+|+...+|++.+|.+.+.
T Consensus       216 p~~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v---~~~~~~~~l~~~~TTSPSY~lmASlD~a~~~m~  292 (417)
T PF01276_consen  216 PRSALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIV---DHERVNEALSMHQTTSPSYPLMASLDVARAQME  292 (417)
T ss_dssp             GTTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCT---THHHHHHHHHHHS-SS--HHHHHHHHHHHHHHS
T ss_pred             ccchhhccCccccccceeeeechhhcccccccceEEEecCCCcc---cHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence            445555 799       999999999988766 78888875200   123444432222356789999999999988773


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHH----CCCEEecCC----C------------------------CCeeEEEEe-----
Q 010008          360 SPEFKVYQNKVVSNCRALASRLVE----LGYKLVSGG----S------------------------DNHLVLVDL-----  402 (520)
Q Consensus       360 ~~~~~~~~~~i~~na~~l~~~L~~----~G~~v~~~g----t------------------------~~~~~~vd~-----  402 (520)
                      ..+.++..++.+++++.+++.|++    .++++..+.    .                        |.-=+.+.+     
T Consensus       293 ~~~G~~l~~~~i~~a~~~R~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~whgf~~~~~~~~~lDP~K~ti~~pG~~~  372 (417)
T PF01276_consen  293 EEEGRELLEEAIELAEEFRKKINRLNDIWGFKVLGPEDVGGEGCWDLDPGENWHGFEGLADDYYMLDPTKLTINTPGIDA  372 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCT-SSEESS-SEECTCCGCB--TT-TTT--TT--TTSEEE-TTEEEEE-STBET
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhcCCCceEecCCccccCCccccccCccccchhchhcccCccccCCcEEEEEccCcCc
Confidence            345577888889999999999943    466665421    0                        111123443     


Q ss_pred             ----cCCCCCHHHHHHHHhhcCeEEcCC
Q 010008          403 ----RPMGIDGARVEKILDMASITLNKN  426 (520)
Q Consensus       403 ----~~~g~~~~~~~~~L~~~gI~v~~~  426 (520)
                          ...|+++..+.+.|++.||.+.+.
T Consensus       373 ~g~~~~~Gi~g~~~~~~L~~~~I~~Ek~  400 (417)
T PF01276_consen  373 DGELSELGIPGYIVEKYLREHGIQVEKT  400 (417)
T ss_dssp             TSSB-SS---HHHHHHHHHHTTEE-SEE
T ss_pred             CCcccccCCCHHHHHHHHHHcCCEEEec
Confidence                456889999999999999999764

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.84  E-value=2.9e-19  Score=186.47  Aligned_cols=289  Identities=18%  Similarity=0.206  Sum_probs=184.2

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +++..+.+|    +++++++|.+.     .+...||++|+..++.++++|||+|+++++.|++.+....    ......+
T Consensus        50 ~~pt~~~L~----~~lA~l~g~~~-----~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~----~~~~~~g  116 (386)
T PRK08045         50 GNPTRDVVQ----RALAELEGGAG-----AVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFD----SLAKRGC  116 (386)
T ss_pred             CCccHHHHH----HHHHHHhCCCe-----EEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHH----HHHhhCC
Confidence            345566777    67888998642     3555777799999999999999999999998876432110    0001112


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                        .++..+  +    ..|++++++++++ ++|+|+++.|+||+  ..|+++|.++|+++|+++++|+++..+..     .
T Consensus       117 --i~v~~v--d----~~d~e~l~~~l~~-~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~-----~  182 (386)
T PRK08045        117 --YRVLFV--D----QGDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPAL-----Q  182 (386)
T ss_pred             --eEEEEe--C----CCCHHHHHHhccc-CCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcccc-----C
Confidence              233332  2    3689999999987 89999999999997  78999999999999999999999765532     3


Q ss_pred             CCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccC-CCCCCCCChHHHHHHHHHHHHHhcCchhHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAV-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKV  365 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~-~p~~~g~p~~~~iaala~al~~~~~~~~~~  365 (520)
                      .|+. ++|++++|+||++.|+.   +|+++++++     ++.+++.... ..+...+|. ...    .+++.+.  .+..
T Consensus       183 ~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~-----~~~~~l~~~~~~~g~~~~p~-~~~----l~~rgl~--tl~~  250 (386)
T PRK08045        183 NPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDP-----DVVTELAWWANNIGVTGGAF-DSY----LLLRGLR--TLVP  250 (386)
T ss_pred             CchhhCCCEEEeecceeccCCCCceeEEEEeCcH-----HHHHHHHHHHHhcCCCCCHH-HHH----HHHhhhc--cHHH
Confidence            4555 79999999999999887   488877653     5655553221 112212211 111    1222222  2567


Q ss_pred             HHHHHHHHHHHHHHHHHHC-CC-EEecCCCC---------------CeeEEEEecCCCCCHHHHHHHHhhcC---eEEcC
Q 010008          366 YQNKVVSNCRALASRLVEL-GY-KLVSGGSD---------------NHLVLVDLRPMGIDGARVEKILDMAS---ITLNK  425 (520)
Q Consensus       366 ~~~~i~~na~~l~~~L~~~-G~-~v~~~gt~---------------~~~~~vd~~~~g~~~~~~~~~L~~~g---I~v~~  425 (520)
                      .+++..+|+..+++.|++. .+ +|..++-.               +.++.+++.  + +.+.+.++++...   +.++.
T Consensus       251 R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~--~-~~~~~~~f~~~l~~~~~~~s~  327 (386)
T PRK08045        251 RMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD--G-DEQTLRRFLGGLSLFTLAESL  327 (386)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEec--C-cHHHHHHHHHhccceeEeccC
Confidence            7899999999999999884 34 23333211               124445553  2 2344455555433   33333


Q ss_pred             CC------CCCCCC------------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          426 NS------VPGDKS------------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       426 ~~------~Pg~~~------------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      +.      .|-..+            ...++-||++..        -||.+.+.+-|.+++...
T Consensus       328 G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG--------lE~~~dl~~dl~~al~~~  383 (386)
T PRK08045        328 GGVESLISHAATMTHAGMAPEARAAAGISETLLRISTG--------IEDGEDLIADLENGFRAA  383 (386)
T ss_pred             CCCceeEeCCCCcccccCCHHHHHhcCCCCCeEEEEeC--------cCCHHHHHHHHHHHHHHh
Confidence            21      121100            012456898864        367888888787777643

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.84  E-value=2.9e-19  Score=187.01  Aligned_cols=242  Identities=24%  Similarity=0.248  Sum_probs=159.8

Q ss_pred             CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCC
Q 010008          103 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKP  182 (520)
Q Consensus       103 n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~p  182 (520)
                      .+..+.+.+++......  ..|++..||  +++..+++|    +++++++|.+.     .+.++||++|+.+++.++++|
T Consensus        33 ~~~~~~~~~~~~~~~~~--~~~~~y~r~--~~p~~~~le----~~la~l~g~~~-----~v~~ssG~~Ai~~al~al~~~   99 (390)
T PRK08133         33 SFVFESAAEAAARFAGE--EPGNIYSRF--TNPTVTMFQ----ERLAALEGAEA-----CVATASGMAAILAVVMALLQA   99 (390)
T ss_pred             CcccCCHHHHHHhhcCC--cCCceeECC--CChHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCC
Confidence            34444455544433221  123444444  345566666    67889999875     255678889999999999999


Q ss_pred             CCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHH
Q 010008          183 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYP  260 (520)
Q Consensus       183 GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~  260 (520)
                      ||+|++.++.|++.+....    ..+...|.  +++.++++      |++++++++++ ++|+|++..++||+  ..|++
T Consensus       100 Gd~Vi~~~~~y~~t~~~~~----~~~~~~G~--~v~~vd~~------d~~~l~~~i~~-~tklV~ie~p~NptG~v~dl~  166 (390)
T PRK08133        100 GDHVVSSRSLFGSTVSLFE----KIFARFGI--ETTFVDLT------DLDAWRAAVRP-NTKLFFLETPSNPLTELADIA  166 (390)
T ss_pred             CCEEEEccCcchhHHHHHH----HHHHHcCc--EEEEECCC------CHHHHHHhcCc-CCeEEEEECCCCCCCCcCCHH
Confidence            9999999988876542110    11222344  56665442      78999999987 89999999888886  78999


Q ss_pred             HHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEEEeccCcccCCC--C-ceEEEeeCCCcchhhHHHhhcccCC
Q 010008          261 RMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGP--R-GGMIFFKKDPVLGVELESAINNAVF  336 (520)
Q Consensus       261 ~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S~hK~l~Gp--r-gG~I~~~~~~~~~~~l~~~i~~~~~  336 (520)
                      +|.++|+++|+++++|+++..+..     ..|+. ++|++++|+||++.|+  + ||+|++++      ++.+++.....
T Consensus       167 ~I~~la~~~gi~livD~t~~~~~~-----~~pl~~g~Divv~S~sK~~~g~g~~~GG~vv~~~------~~~~~~~~~~~  235 (390)
T PRK08133        167 ALAEIAHAAGALLVVDNCFCTPAL-----QQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSK------ELMEEVFGFLR  235 (390)
T ss_pred             HHHHHHHHcCCEEEEECCCccccc-----CCchhhCCcEEEeecceeecCCcceEeEEEEcCH------HHHHHHHHHHH
Confidence            999999999999999999765433     23444 7899999999999654  3 48888876      44443322111


Q ss_pred             CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCE
Q 010008          337 PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYK  387 (520)
Q Consensus       337 p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~  387 (520)
                      .  .|. ......+. .+++.+  ..+..+.++..+|+..+++.|++. ++.
T Consensus       236 ~--~g~-~~~~~~a~-~~l~gl--~tl~~R~~~~~~~a~~la~~L~~~p~v~  281 (390)
T PRK08133        236 T--AGP-TLSPFNAW-VFLKGL--ETLSLRMEAHSANALALAEWLEAHPGVE  281 (390)
T ss_pred             H--hCC-CCCHHHHH-HHHccc--chHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence            0  111 11122211 123322  245667788889999999999884 554

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.84  E-value=5e-19  Score=184.42  Aligned_cols=288  Identities=20%  Similarity=0.188  Sum_probs=188.8

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      |++..+++|    +++++++|.+.     .+.++||+.|+.+++. +++|||+|++.++.|++......    ......|
T Consensus        45 ~~p~~~~le----~~la~l~g~~~-----~l~~~sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~----~~~~~~G  110 (378)
T TIGR01329        45 GNPTRTALE----SLLAKLDKADR-----AFAFSSGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLT----QVVPRSG  110 (378)
T ss_pred             CChHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHH----HHHHHcC
Confidence            455567777    67889999854     3556889988887665 88999999999988765431110    0112234


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .  +++.+++      .|++++++++++ ++|+|++++++||+  ..|+++|+++|+++|+++++|++|..+..     .
T Consensus       111 ~--~v~~vd~------~d~~~le~~i~~-~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~-----~  176 (378)
T TIGR01329       111 V--VVVHVDT------TDLDKVKAALGP-KTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLL-----C  176 (378)
T ss_pred             c--EEEEeCC------CCHHHHHHhcCc-CceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence            4  5555443      389999999987 89999999888886  78999999999999999999999866643     2


Q ss_pred             CCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCC-CCCCCCChHHHHHHHHHHHHHhcCchhHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKV  365 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~-p~~~g~p~~~~iaala~al~~~~~~~~~~  365 (520)
                      .|+. ++|++++|+||++.||.   +|+++++++     ++.+++..... .+....|   .-+.+  .+..+  ..+..
T Consensus       177 ~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~-----~~~~~~~~~~~~~G~~~~~---~~a~l--~~~~l--~tl~~  244 (378)
T TIGR01329       177 NPLELGADIVYHSATKFLAGHSDVMAGVLAVKGE-----EIAKKVYFLQNSTGSGLAP---FDCWL--LLRGI--KTLAI  244 (378)
T ss_pred             ChhhcCCcEEEEecceeccCCccceeEEEEeCcH-----HHHHHHHHHHHhcCCcCCH---HHHHH--HHccC--CCHHH
Confidence            3444 79999999999998864   699988764     55555543222 1211111   11211  12222  34567


Q ss_pred             HHHHHHHHHHHHHHHHHHC-CC-EEecCCC---------------CCeeEEEEecCCCCC-HHHHHHHHhhcCeEEcCCC
Q 010008          366 YQNKVVSNCRALASRLVEL-GY-KLVSGGS---------------DNHLVLVDLRPMGID-GARVEKILDMASITLNKNS  427 (520)
Q Consensus       366 ~~~~i~~na~~l~~~L~~~-G~-~v~~~gt---------------~~~~~~vd~~~~g~~-~~~~~~~L~~~gI~v~~~~  427 (520)
                      +.++..+|+..+++.|++. .+ ++..++-               ...++.+++  .+.. ...+.+.|+..+|.++.+.
T Consensus       245 R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~--~~~~~~~~~~~~L~~~~i~~s~G~  322 (378)
T TIGR01329       245 RIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFET--GSVALSKRLVEATKLFSITVSFGS  322 (378)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEE--CCHHHHHHHHHhCcCcccccCCCC
Confidence            7888999999999999873 22 2322211               123444555  2333 3456677777888887653


Q ss_pred             C------CCCCC------------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          428 V------PGDKS------------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       428 ~------Pg~~~------------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +      |-..+            ...++-||+|..        -||.+.+.+-|.+++..
T Consensus       323 ~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG--------lE~~~dl~~dl~~al~~  375 (378)
T TIGR01329       323 VNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVG--------IEDVDDLISDLDIAFVT  375 (378)
T ss_pred             CCceeeCCCccccccCCHHHHHhcCCCCCeEEEEec--------cCCHHHHHHHHHHHHHh
Confidence            1      32110            012456888764        36788888888777764

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PLN02242 methionine gamma-lyase

Probab=99.84  E-value=3.9e-19  Score=187.17  Aligned_cols=224  Identities=18%  Similarity=0.183  Sum_probs=158.1

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +++...++|    +++++++|.+..     +...||++|+.+++.++++|||+|++.++.|+++......   ......|
T Consensus        74 ~~Pt~~~LE----~~lA~l~g~~~~-----l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~---~~~~~~G  141 (418)
T PLN02242         74 FNPTVLNLG----RQMAALEGTEAA-----YCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAH---FLPRKCN  141 (418)
T ss_pred             CChhHHHHH----HHHHHHhCCCeE-----EEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHH---hhhhccC
Confidence            567778888    678899999862     3457889999999999999999999999877655211000   0011234


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .  +++.++.      .|++++++++++.++|+|++.+++||+  ..|+++|+++|+++|++|++|++|. .+..     
T Consensus       142 ~--~~~~~d~------~d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~-~~~~-----  207 (418)
T PLN02242        142 I--TTTFVDI------TDLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFA-PMVL-----  207 (418)
T ss_pred             c--eEEEcCC------CCHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCC-ccCC-----
Confidence            3  4444332      389999999977359999999999987  7799999999999999999999974 3221     


Q ss_pred             CCCC-cccEEEeccCcccCC--CC-ceEEEeeCCCcchhhHHHhhcccCC--CCCCCCChHHHHHHHHHHHHHhcCchhH
Q 010008          291 DPFK-YCDVVTTTTHKSLRG--PR-GGMIFFKKDPVLGVELESAINNAVF--PGLQGGPHNHTIGGLAVCLKHAQSPEFK  364 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~G--pr-gG~I~~~~~~~~~~~l~~~i~~~~~--p~~~g~p~~~~iaala~al~~~~~~~~~  364 (520)
                      .+.. ++|++++|++|++.|  ++ ||++++++      ++.+++.....  ....|.+...+.|++. ++ .  ...+.
T Consensus       208 ~~~~~g~divv~S~SK~l~g~g~~~gG~iv~~~------~li~~l~~~~~~~~~~~g~~~~~~~A~l~-~~-~--l~tl~  277 (418)
T PLN02242        208 SPARLGADVVVHSISKFISGGADIIAGAVCGPA------ELVNSMMDLHHGALMLLGPTMNPKVAFEL-SE-R--LPHLS  277 (418)
T ss_pred             CHHHcCCcEEEEeCccccCCCCCceEEEEEcCH------HHHHHHHHHhhhhhhccCCCCCHHHHHHH-Hc-C--CCcHH
Confidence            2222 689999999999854  34 69999877      56555543211  1123444444444432 11 1  12445


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEecCC
Q 010008          365 VYQNKVVSNCRALASRLVELGYKLVSGG  392 (520)
Q Consensus       365 ~~~~~i~~na~~l~~~L~~~G~~v~~~g  392 (520)
                      ..+++..+|++.+++.|++.++++..++
T Consensus       278 ~r~~~~~~~a~~la~~L~~~~~~V~yP~  305 (418)
T PLN02242        278 LRMKEHCRRAMEYAKRMKELGLKVIYPG  305 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEECCC
Confidence            6778899999999999999888887554

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.83  E-value=4.6e-19  Score=185.98  Aligned_cols=217  Identities=17%  Similarity=0.189  Sum_probs=152.6

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +++..+++|    +++++++|.+.     .+.+.||+.|+..++.++++|||+|++.+..|++.+..    ....+...|
T Consensus        68 ~~p~~~~le----~~lA~l~g~~~-----al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~----~~~~~~~~G  134 (403)
T PRK07810         68 GNPTVSMFE----ERLRLIEGAEA-----CFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVV----CNEILPRWG  134 (403)
T ss_pred             CCchHHHHH----HHHHHHhCCCc-----EEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHH----HHHHHHHcC
Confidence            445577787    67889999874     46678999999999999999999999988766554321    111122335


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .  +++.++.      .|++++++++++ ++|+|++..|+||+  ..|+++|+++|+++|++|++|++|..+...     
T Consensus       135 ~--~v~~vd~------~d~~~l~~ai~~-~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~-----  200 (403)
T PRK07810        135 V--ETVFVDG------EDLSQWEEALSV-PTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQ-----  200 (403)
T ss_pred             c--EEEEECC------CCHHHHHHhcCc-CceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccC-----
Confidence            4  5555442      389999999988 89999999998887  789999999999999999999998766442     


Q ss_pred             CCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  366 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~  366 (520)
                      .|+. ++|++++|+||++.|..   ||+|+++++     .+.+++.....  ..|.......+++  +++.+  ..+..+
T Consensus       201 ~~~~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~-----~~~~~l~~~~~--~~g~~~s~~~a~l--~l~~L--~tl~~R  269 (403)
T PRK07810        201 RGLPLGADVVVYSGTKHIDGQGRVLGGAILGDRE-----YIDGPVQKLMR--HTGPALSAFNAWV--LLKGL--ETLALR  269 (403)
T ss_pred             ChhhcCCcEEEccCCceecCCcCceeEEEEeChH-----HHHHHHHHHHH--HhCCCCCHHHHHH--HHhcc--CcHHHH
Confidence            2344 79999999999997643   599998873     23333332111  1122222222222  23322  235677


Q ss_pred             HHHHHHHHHHHHHHHHH-CCCE
Q 010008          367 QNKVVSNCRALASRLVE-LGYK  387 (520)
Q Consensus       367 ~~~i~~na~~l~~~L~~-~G~~  387 (520)
                      .++..+|+..+++.|++ .++.
T Consensus       270 ~~~~~~~a~~~a~~L~~~p~v~  291 (403)
T PRK07810        270 VRHSNASALRIAEFLEGHPAVR  291 (403)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcc
Confidence            88999999999999987 3443

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.83  E-value=8.4e-19  Score=184.20  Aligned_cols=217  Identities=18%  Similarity=0.192  Sum_probs=151.7

Q ss_pred             chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccc
Q 010008          134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  213 (520)
Q Consensus       134 ~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~  213 (520)
                      ++...++|    +++++++|+++     .|.++||+.|+.+++.++++|||+|++..+.|++.+...    ...+...|.
T Consensus        64 ~p~~~~le----~~lA~l~g~~~-----~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~----~~~~~~~G~  130 (403)
T PRK07503         64 NPTLALLE----QRMASLEGGEA-----AVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFL----HHGLGEFGV  130 (403)
T ss_pred             CchHHHHH----HHHHHHhCCCc-----EEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHH----HHHHhhCCE
Confidence            34567777    67889999875     355689999999999999999999999988776543211    011222343


Q ss_pred             eEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCC
Q 010008          214 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD  291 (520)
Q Consensus       214 ~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~  291 (520)
                        ++..+++      .|++++++++++ +||+|++..++||+  ..|+++|.++|+++|+++|+|++|..+..     ..
T Consensus       131 --~v~~vd~------~d~~~l~~~i~~-~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~-----~~  196 (403)
T PRK07503        131 --TVRHVDL------TDPAALKAAISD-KTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYL-----QR  196 (403)
T ss_pred             --EEEEeCC------CCHHHHHHhcCc-cCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccccc-----CC
Confidence              5555443      378999999988 89999999888887  78999999999999999999999865532     23


Q ss_pred             CCC-cccEEEeccCcccCCC---CceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHH
Q 010008          292 PFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ  367 (520)
Q Consensus       292 p~~-~aDiv~~S~hK~l~Gp---rgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~  367 (520)
                      |+. ++|++++|++|++.|+   +||+++.++      ++.+++.........|.......+++  ++..+  ..+..+.
T Consensus       197 ~l~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~------~l~~~l~~~~~~~~~g~~~s~~~a~l--~l~~L--~tl~~r~  266 (403)
T PRK07503        197 PLELGADLVVHSATKYLGGHGDITAGLVVGGK------ALADRIRLEGLKDMTGAVMSPFDAFL--LMRGL--KTLALRM  266 (403)
T ss_pred             chhhCCCEEEccccccccCCCceeEEEEEcCH------HHHHHHHhhhHHhCcCCCCCHHHHHH--HHcCc--chHHHHH
Confidence            344 7899999999999875   378888665      66666642211122232222222222  23322  2345667


Q ss_pred             HHHHHHHHHHHHHHHHC-CCE
Q 010008          368 NKVVSNCRALASRLVEL-GYK  387 (520)
Q Consensus       368 ~~i~~na~~l~~~L~~~-G~~  387 (520)
                      ++..+|++.+.+.|.+. .+.
T Consensus       267 ~~~~~na~~~a~~L~~~p~v~  287 (403)
T PRK07503        267 DRHCASAQAVAEWLARHPAVE  287 (403)
T ss_pred             HHHHHHHHHHHHHHHhCCCcc
Confidence            77889999999999874 443

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.83  E-value=7.8e-19  Score=184.28  Aligned_cols=213  Identities=23%  Similarity=0.226  Sum_probs=150.4

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +++..+.+|    +++++++|.+.     .|.+.||++|+.+++.++++|||+|+++++.|++......    ......|
T Consensus        58 ~~p~~~~Le----~~lA~l~g~~~-----~v~~~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~----~~~~~~g  124 (405)
T PRK08776         58 GNPTRDLLG----EALAELEGGAG-----GVITATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFN----ALAKKGH  124 (405)
T ss_pred             CChHHHHHH----HHHHHHhCCCc-----eEEEcCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHH----HHHHhcC
Confidence            345556666    67888999854     4667899999999999999999999999988875321110    0011123


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                        .+++.++.      .|++++++++++ +||+|+++.|+||+  ..|+++|.++|+++|+++++|++|..+..     .
T Consensus       125 --~~v~~v~~------~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~-----~  190 (405)
T PRK08776        125 --FALITADL------TDPRSLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPAL-----Q  190 (405)
T ss_pred             --cEEEEECC------CCHHHHHHhcCc-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence              24444332      488999999987 89999999999886  78999999999999999999999865532     3


Q ss_pred             CCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccC-CCCCCCCChHHHHHHHHHHHHHhcCchhHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAV-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKV  365 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~-~p~~~g~p~~~~iaala~al~~~~~~~~~~  365 (520)
                      .|+. ++|++++|+||++.|+.   +|+++++++     ++.+++.... ..+...+    .+.+. ..++.+  ..++.
T Consensus       191 ~pl~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~-----~l~~~l~~~~~~~g~~~s----~~~a~-l~~~gl--~tl~~  258 (405)
T PRK08776        191 KPLEFGADLVLHSTTKYINGHSDVVGGAVVARDA-----ELHQQLVWWANALGLTGS----PFDAF-LTLRGL--RTLDA  258 (405)
T ss_pred             CcccccCCEEEecCceeecCCCCceEEEEEeCCH-----HHHHHHHHHHHhcCCCCC----HHHHH-HHHhhh--CcHHH
Confidence            4555 78999999999998875   588888664     5666554311 1122111    11111 122222  34577


Q ss_pred             HHHHHHHHHHHHHHHHHHC
Q 010008          366 YQNKVVSNCRALASRLVEL  384 (520)
Q Consensus       366 ~~~~i~~na~~l~~~L~~~  384 (520)
                      ..++..+|+..+++.|++.
T Consensus       259 r~~~~~~na~~la~~L~~~  277 (405)
T PRK08776        259 RLRVHQENADAIAALLDGH  277 (405)
T ss_pred             HHHHHHHHHHHHHHHHHcC
Confidence            8899999999999999874

>PLN02368 alanine transaminase

Probab=99.83  E-value=6.7e-19  Score=184.87  Aligned_cols=243  Identities=11%  Similarity=0.039  Sum_probs=162.9

Q ss_pred             HHHHHHHHHHHHHHHcCCC--CCCCceeeecCChH-HHHHHHHHhhC-CCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          137 IDELETLCQKRALAAFNLD--ENKWGVNVQPLSGS-PANFEVYTAIL-KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       137 ~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~sGs-~A~~~~l~all-~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      ..++.+...+++.+.+|++  ++    +|.+|+|+ +++..++.+++ +|||+|++++|.|..+.        ..+...|
T Consensus       109 ~~~LR~aia~~~~~~~g~~~~~~----~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~--------~~~~~~g  176 (407)
T PLN02368        109 LPGVRKEVAEFIERRDGYPSDPE----LIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYS--------ATISLLG  176 (407)
T ss_pred             CHHHHHHHHHHHHHhcCCCCChh----hEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHH--------HHHHHcC
Confidence            3455556667888877854  44    67779998 89999999997 79999999999876542        1334556


Q ss_pred             ceEEEEEcccCCC-CCCCCHHHHHHHhhhc-----CCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhc
Q 010008          213 IYFESMPYRLDES-TGLVDYDMLEKTAILF-----RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHIS  281 (520)
Q Consensus       213 ~~~~~v~~~~d~~-~~~iD~d~le~~i~~~-----~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~  281 (520)
                      .  ++++++++++ ++.+|++++++.+++.     ++|++++++|+||+  .+   .+++|.++|+++|++||+|++ |.
T Consensus       177 ~--~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~-Y~  253 (407)
T PLN02368        177 G--TLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEV-YQ  253 (407)
T ss_pred             C--EEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcc-cc
Confidence            5  6777777654 4789999999988642     68989998999997  44   466778889999999999998 55


Q ss_pred             ccccccc--cCCC------C----C-c-ccEEEeccCccc---CCCCceEEEe---eCCCcchhhHHHhhcccCCCCCCC
Q 010008          282 GLVAASV--VADP------F----K-Y-CDVVTTTTHKSL---RGPRGGMIFF---KKDPVLGVELESAINNAVFPGLQG  341 (520)
Q Consensus       282 gli~~~~--~~~p------~----~-~-aDiv~~S~hK~l---~GprgG~I~~---~~~~~~~~~l~~~i~~~~~p~~~g  341 (520)
                      .+++.+.  +.+.      +    . + --|++.|++|++   +|+|.||+++   ++      ++.+.+.+.... ..+
T Consensus       254 ~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~------~li~~~~~~~~~-~~~  326 (407)
T PLN02368        254 QNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP------KTVEEIYKVASI-ALS  326 (407)
T ss_pred             ccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCH------HHHHHHHHHhcc-cCC
Confidence            6665442  1111      0    0 1 126779999985   6999999985   44      566665553211 123


Q ss_pred             CChHHHHHHHHHHHHHhc--Cch---h----HHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCCeeEEEEec
Q 010008          342 GPHNHTIGGLAVCLKHAQ--SPE---F----KVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVLVDLR  403 (520)
Q Consensus       342 ~p~~~~iaala~al~~~~--~~~---~----~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~~~~vd~~  403 (520)
                      .+...+.++ ..+|+.-.  +..   |    +++.+.+.++++.+.+.|++. |+.+..+ ...+++|+++.
T Consensus       327 ~~~~~Q~aa-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P-~Gafy~~~~i~  396 (407)
T PLN02368        327 PNVSGQIFM-GLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFT-EGAMYSFPQIK  396 (407)
T ss_pred             CCcHHHHHH-HHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCC-CeeeEeccCCC
Confidence            333444443 33453210  001   2    235677888899999999884 8877654 23566676654

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.83  E-value=6.5e-19  Score=183.15  Aligned_cols=290  Identities=14%  Similarity=0.089  Sum_probs=182.8

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      |++..+.+|    ++++++.|.+.     .+.+.||++|+.+++.++++|||+|+++++.|++.....    .......|
T Consensus        48 gnPt~~~lE----~~lA~l~g~~~-----~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~----~~~~~~~g  114 (377)
T TIGR01324        48 GTLTHFALQ----DAMCELEGGAG-----CYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFC----DIVLKRMG  114 (377)
T ss_pred             CCccHHHHH----HHHHHHhCCCc-----EEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHH----HHHHHhcC
Confidence            667778888    67888999864     244678889999999999999999999998775432100    00111223


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .  ++..++.+      +.+++++++++ ++|+|++.+++||+  ..|+++|+++|+++|+++++|++|..|...     
T Consensus       115 i--~v~~~d~~------~~e~l~~~i~~-~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~-----  180 (377)
T TIGR01324       115 V--DITYYDPL------IGEDIATLIQP-NTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLF-----  180 (377)
T ss_pred             c--EEEEECCC------CHHHHHHhcCC-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccccc-----
Confidence            3  33343221      22789998887 89999999888886  779999999999999999999999887653     


Q ss_pred             CCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  366 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~  366 (520)
                      .|+. ++|++++|+||++.|+.   ||++++++      +..+++.....  ..|......-+ . ..++.+.  -...+
T Consensus       181 ~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~------~~~~~l~~~~~--~~G~~l~p~~a-~-~~~rgl~--tl~~R  248 (377)
T TIGR01324       181 KPLEHGVDISIQAGTKYLVGHSDIMIGTVVANA------RTWDQLREHSY--LMGQMVDADDA-Y-TTLRGLR--TLGVR  248 (377)
T ss_pred             CccccCceEEEecCceeccCCCCceEEEEEeCH------HHHHHHHHHHH--HhCCCCCHHHH-H-HHHhhhh--hHHHH
Confidence            2444 79999999999998875   48888876      44444432111  11221111111 1 1222222  23456


Q ss_pred             HHHHHHHHHHHHHHHHHC-CC-EEecCC---------------CCCeeEEEEecCCCC-CHHHHHHHHhhcCeEEcCCCC
Q 010008          367 QNKVVSNCRALASRLVEL-GY-KLVSGG---------------SDNHLVLVDLRPMGI-DGARVEKILDMASITLNKNSV  428 (520)
Q Consensus       367 ~~~i~~na~~l~~~L~~~-G~-~v~~~g---------------t~~~~~~vd~~~~g~-~~~~~~~~L~~~gI~v~~~~~  428 (520)
                      .++..+|+..+++.|.++ .+ ++..++               ..++++.+++...+. ....+.+.|+..++.++-+.+
T Consensus       249 ~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~l~~~~~~~slG~~  328 (377)
T TIGR01324       249 LKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLTQKQVHAFLDHLQLFGLGYSWGGY  328 (377)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcceEeccCCCc
Confidence            788889999999999883 33 333332               124566666642111 123344555556666654321


Q ss_pred             ------CC-CCC-------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          429 ------PG-DKS-------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       429 ------Pg-~~~-------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                            |. ..+       ....+-||++..        -||.+.+.+-+.++++
T Consensus       329 ~sl~~~~~~~~~~~~~~~~~~~~~liR~svG--------lE~~~dl~~dl~~al~  375 (377)
T TIGR01324       329 ESLALCNQPELGHRPNIKRNLEGPLIRVHIG--------LENVDDLKADLKAGFE  375 (377)
T ss_pred             cceeecCCCCCCHHHHHhccCCCCEEEEEeC--------CCCHHHHHHHHHHHHh
Confidence                  11 000       011245888754        3677777777776664

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK15029 arginine decarboxylase; Provisional

Probab=99.83  E-value=8.5e-19  Score=193.29  Aligned_cols=296  Identities=15%  Similarity=0.107  Sum_probs=203.2

Q ss_pred             HHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEccc
Q 010008          144 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL  222 (520)
Q Consensus       144 a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~  222 (520)
                      +++.++++||++...+     .++|| .+|.++++++++|||+|++...+|-+.+ |       .+.++|.  .++++..
T Consensus       210 Aq~~aA~~fgA~~t~F-----lvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~-~-------al~L~ga--~Pvyl~P  274 (755)
T PRK15029        210 SEKYAARVFGADRSWS-----VVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIE-Q-------GLILTGA--KPVYMVP  274 (755)
T ss_pred             HHHHHHHHhCCCcEEE-----EeCChhHHHHHHHHHhcCCCCEEEeecccHHHHH-H-------HHHHcCC--eEEEecc
Confidence            5578899999997532     36787 8999999999999999999988776554 2       3445565  5555432


Q ss_pred             C-CCC---CCCC-----HHHHHHHhhhc---------CCcEEEEcCCCCCC-CCCHHHHHHHHHHhCCEEEEechhhccc
Q 010008          223 D-EST---GLVD-----YDMLEKTAILF---------RPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGL  283 (520)
Q Consensus       223 d-~~~---~~iD-----~d~le~~i~~~---------~pklIi~~~s~~p~-~~d~~~i~~ia~~~g~~li~D~Ah~~gl  283 (520)
                      . .+.   +.++     ++.+++++..+         +|+++++.+|+|-+ ..|++.|.++|+++|++|++|+||++.+
T Consensus       275 ~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~  354 (755)
T PRK15029        275 SRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYA  354 (755)
T ss_pred             cccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCCcceeeCHHHHHHHHHhcCCeEEEECcccccc
Confidence            1 122   2345     89999888653         23489999998876 7899999999999999999999999877


Q ss_pred             ccccccC--CCC-------Cccc-EEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHH
Q 010008          284 VAASVVA--DPF-------KYCD-VVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLA  352 (520)
Q Consensus       284 i~~~~~~--~p~-------~~aD-iv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala  352 (520)
                      .+....+  +++       .++| +++.|+||+|++... .+|..+.+... .+ .++++.+..-....+|+...+|++.
T Consensus       355 ~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~-id-~~r~~~~l~~~qSTSPSY~LmASLD  432 (755)
T PRK15029        355 RFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGA-IN-FSRFNQAYMMHATTSPLYAICASND  432 (755)
T ss_pred             ccCccccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCCccc-cC-HHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            6555444  344       3788 999999999988765 67777542000 01 2344444333335789999999999


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-C------------------------------------------CEEe
Q 010008          353 VCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-G------------------------------------------YKLV  389 (520)
Q Consensus       353 ~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G------------------------------------------~~v~  389 (520)
                      +|...+.....++..++..+.+..+++.|.+. +                                          +.++
T Consensus       433 ~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (755)
T PRK15029        433 VAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVM  512 (755)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhccccccccccccccccCccccccccccccccccccchhhhccccceeee
Confidence            98877654234566677777788888887652 2                                          2222


Q ss_pred             cCC---------------CCCeeEEEEecCCCCCHH---------HHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccC
Q 010008          390 SGG---------------SDNHLVLVDLRPMGIDGA---------RVEKILDMASITLNKNSVPGDKSALVPGGIRIGSP  445 (520)
Q Consensus       390 ~~g---------------t~~~~~~vd~~~~g~~~~---------~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~  445 (520)
                      .++               -|.-=+++.++..+++|.         .+.+.|+++||.+.+..         ...+    -
T Consensus       513 ~~~~~~~g~~~~~~~~~~lDp~Klti~~~~~g~sG~~~~~gip~~~l~~~L~~~gI~~E~~~---------~~~v----L  579 (755)
T PRK15029        513 HPGESWHGFKDLPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTT---------DFQI----M  579 (755)
T ss_pred             cccccccCcccccccccccCCceEEEEcCCCCCCCcccccCCcHHHHHHHHHHcCCEEEecC---------CCeE----E
Confidence            210               011123344544566676         89999999999997631         1122    2


Q ss_pred             CccccCCCHHHHHHHHHHHHHHHH
Q 010008          446 AMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       446 ~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      .+++.|.++++++++.+.+.+.-+
T Consensus       580 ~l~s~g~t~~~~~~L~~aL~~~~~  603 (755)
T PRK15029        580 FLFSMGVTRGKWGTLVNTLCSFKR  603 (755)
T ss_pred             EEeCCCCCHHHHHHHHHHHHHHHH
Confidence            355667889999999998887633

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.82  E-value=9.2e-19  Score=181.28  Aligned_cols=228  Identities=16%  Similarity=0.190  Sum_probs=155.0

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +++..+++|    ++++++.|.+.     -+...||++|+.+++ .+++|||+|+++.+.|++......     ...-.+
T Consensus        52 ~~p~~~~le----~~lA~leg~~~-----~v~~~sG~aAi~~~l-~~l~~GD~VI~~~~~yg~~~~~~~-----~~~~~~  116 (364)
T PRK07269         52 KNPTRAKLE----ETLAAIESADY-----ALATSSGMSAIVLAF-SVFPVGSKVVAVRDLYGGSFRWFN-----QQEKEG  116 (364)
T ss_pred             CCccHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHH-HHhCCCCEEEEecCCcCchHHHHH-----HHHhcC
Confidence            345677888    67888888765     255678889999888 467999999999887765432100     000000


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                       .+.     +   ++..|++++++++++ +||+|+++.|+||+  ..|+++|+++|+++|+++++|++++.++.     .
T Consensus       117 -~~~-----~---~~~~d~~~l~~~i~~-~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~-----~  181 (364)
T PRK07269        117 -RFH-----F---TYANTEEELIAAIEE-DTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIY-----Q  181 (364)
T ss_pred             -cEE-----E---EecCCHHHHHHhcCc-CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence             011     1   234689999999987 89999999999987  68999999999999999999999765432     3


Q ss_pred             CCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  366 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~  366 (520)
                      .|++ ++|++++|+||++.|+.   ||+|+++++     ++.+++.....  ..|......-+++  ++..+  ..+...
T Consensus       182 ~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~-----~l~~~~~~~~~--~~G~~~s~~~a~l--~~~~L--~tL~~r  250 (364)
T PRK07269        182 RPIELGADIVLHSATKYLSGHNDVLAGVVVTNDL-----ELYEKLFYNLN--TTGAVLSPFDSYL--LMRGL--KTLSLR  250 (364)
T ss_pred             CchhhCCcEEEecCceeccCCCcccceEEEeCcH-----HHHHHHHHHHH--HhCCCCCHHHHHH--HHcCC--CcHHHH
Confidence            4555 89999999999998855   699898764     56665542211  1122111122222  23332  235677


Q ss_pred             HHHHHHHHHHHHHHHHHC-CC-EEecCCCCCeeEEEEe
Q 010008          367 QNKVVSNCRALASRLVEL-GY-KLVSGGSDNHLVLVDL  402 (520)
Q Consensus       367 ~~~i~~na~~l~~~L~~~-G~-~v~~~gt~~~~~~vd~  402 (520)
                      .++..+|+..+++.|++. ++ ++..++- ..++.+.+
T Consensus       251 ~~~~~~na~~~a~~L~~~p~v~~v~ypg~-gg~~sf~~  287 (364)
T PRK07269        251 MERSTANAQEVVAFLKKSPAVKEVLYTGK-GGMISFKV  287 (364)
T ss_pred             HHHHHHHHHHHHHHHHhCCCccEEeCCCc-CcEEEEEE
Confidence            888999999999999874 44 4444442 34444544

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.82  E-value=2.2e-18  Score=180.28  Aligned_cols=246  Identities=18%  Similarity=0.179  Sum_probs=166.7

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +++..+.+|    +++++++|.+.     .|.++||+.|+.+++. ++++||+|+++++.|++.+....    ..+...|
T Consensus        52 ~~p~~~~le----~~lA~l~g~~~-----~v~~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~----~~~~~~G  117 (390)
T PRK08064         52 GNPTREALE----DIIAELEGGTK-----GFAFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMIT----EVLSRFG  117 (390)
T ss_pred             CChhHHHHH----HHHHHHhCCCC-----eEEECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHH----HHHHHcC
Confidence            455667777    68889999875     3556999999887776 78999999999998876542111    1122235


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .  +++.+++      .|++++++.+++ ++|+|++++|+||+  ..|+++|.++|+++|+++++|+++..+..     .
T Consensus       118 ~--~v~~v~~------~d~~~l~~~l~~-~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~-----~  183 (390)
T PRK08064        118 I--EHTFVDM------TNLEEVAQNIKP-NTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLL-----Q  183 (390)
T ss_pred             C--EEEEECC------CCHHHHHHhcCC-CceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccc-----c
Confidence            4  5555443      278999999987 89999999999887  78999999999999999999999765432     2


Q ss_pred             CCCC-cccEEEeccCcccCCCCc---eEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPRG---GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  366 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gprg---G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~  366 (520)
                      .|+. ++|++++|+||++.|+.+   |+++++++     ++.++++....+.  |......-+.+  +++.+  ..+..+
T Consensus       184 ~~~~~g~Divv~S~tK~~~G~~~~laG~~v~~~~-----~~~~~l~~~~~~~--g~~~~~~~a~l--~~~gl--~tl~~R  252 (390)
T PRK08064        184 KPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDE-----ELAQKLYFLQNSF--GAVLGVQDCWL--VLRGL--KTLHVR  252 (390)
T ss_pred             CchhhCCcEEEeecceeccCCccceeEEEEeCCH-----HHHHHHHHHHHhc--CCCCCHHHHHH--HHccc--CcHHHH
Confidence            2334 789999999999988764   88888763     5666665433221  22111112222  22222  124567


Q ss_pred             HHHHHHHHHHHHHHHHHCC-C-EEecCCC---------------CCeeEEEEecCCCCCHHHHHHHHhhcCe
Q 010008          367 QNKVVSNCRALASRLVELG-Y-KLVSGGS---------------DNHLVLVDLRPMGIDGARVEKILDMASI  421 (520)
Q Consensus       367 ~~~i~~na~~l~~~L~~~G-~-~v~~~gt---------------~~~~~~vd~~~~g~~~~~~~~~L~~~gI  421 (520)
                      .++..+|+..+++.|++.+ + ++..++-               ...++.+++.    +.+.+.++++..++
T Consensus       253 ~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~----~~~~~~~f~~~l~l  320 (390)
T PRK08064        253 LEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQ----SEEAVRQFVSHVKL  320 (390)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEEC----CHHHHHHHHHhCCc
Confidence            7888999999999998743 2 2332211               1123444442    23567788888887

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.82  E-value=1.6e-18  Score=180.14  Aligned_cols=284  Identities=17%  Similarity=0.189  Sum_probs=181.1

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +++..+++|    +++++++|+++     .+...||++|+.+++ ++++|||+|+++++.|++.+...    .......|
T Consensus        50 ~~pt~~~le----~~la~l~g~~~-----~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~----~~~~~~~G  115 (366)
T PRK08247         50 GNPTRGVLE----QAIADLEGGDQ-----GFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLF----EEHWKKWN  115 (366)
T ss_pred             CCchHHHHH----HHHHHHhCCCc-----EEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHH----HHHhhccC
Confidence            456677787    67889999986     355688989988765 68899999999999887643211    01122234


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .  ++..++.      .|++++++++++ ++|+|+++.|+||+  ..|+++|.++|+++|+++++|+++..++.     .
T Consensus       116 ~--~v~~vd~------~d~~~l~~~i~~-~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~-----~  181 (366)
T PRK08247        116 V--RFVYVNT------ASLKAIEQAITP-NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVL-----Q  181 (366)
T ss_pred             c--eEEEECC------CCHHHHHHhccc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccc-----c
Confidence            3  5555432      489999999988 89999999999986  67899999999999999999999754432     2


Q ss_pred             CCCC-cccEEEeccCcccCCC---CceEEEeeCCCcchhhHHHhhcccCC-CCCCCCChHHHHHHHHHHHHHhcCchhHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKV  365 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gp---rgG~I~~~~~~~~~~~l~~~i~~~~~-p~~~g~p~~~~iaala~al~~~~~~~~~~  365 (520)
                      .|+. ++|++++|++|++.|+   ++|+++++++     ++.+++..... .+..-+| ..+.    .++..+  ..+..
T Consensus       182 ~p~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~-----~l~~~~~~~~~~~g~~~s~-~~a~----l~~~~l--~tl~~  249 (366)
T PRK08247        182 RPLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQ-----ELCERLAYYQNAAGAVLSP-FDSW----LLIRGM--KTLAL  249 (366)
T ss_pred             CchhcCCcEEEeecceeccCCCceeeeEEecChH-----HHHHHHHHHHHhcCCCCCh-HHHH----HHHhcc--CcHHH
Confidence            2444 6899999999999876   6799988753     55555432211 1111111 1111    112222  13455


Q ss_pred             HHHHHHHHHHHHHHHHHH-CCCEE-ecCCCCCeeEEEEecCCCCCHHHHHHHHhhc---CeEEcCCC------CCCCCC-
Q 010008          366 YQNKVVSNCRALASRLVE-LGYKL-VSGGSDNHLVLVDLRPMGIDGARVEKILDMA---SITLNKNS------VPGDKS-  433 (520)
Q Consensus       366 ~~~~i~~na~~l~~~L~~-~G~~v-~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~---gI~v~~~~------~Pg~~~-  433 (520)
                      ..++..+|++.+++.|++ .++.. ..++. ..++.+.+.    ..+.+.++++..   .+.++-+.      .|+... 
T Consensus       250 r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~-gg~~sf~~~----~~~~~~~~~~~l~~~~~~~slg~~~sl~~~p~~~~~  324 (366)
T PRK08247        250 RMRQHEENAKAIAAFLNEQPGVTDVLYPGR-GGMLSFRLQ----DEEWVNPFLKSLKLITFAESLGGVESFITYPATQTH  324 (366)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCeeEEecCCc-CcEEEEEEC----CHHHHHHHHHcCCcceEccCCCCCceEEECCccccc
Confidence            667789999999999988 47654 33432 334445553    123344444332   22332210      344221 


Q ss_pred             -----------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          434 -----------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       434 -----------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                                 ...++-+|++..        -|+.+.+.+-|.+++.
T Consensus       325 ~~~~~~~r~~~gi~~~~~R~svG--------lE~~~dl~~dl~~al~  363 (366)
T PRK08247        325 ADIPEEIRIANGVCNRLLRFSVG--------IENVEDLIADLKQAFK  363 (366)
T ss_pred             ccCCHHHHHhcCCCCCeEEEEec--------cCCHHHHHHHHHHHHh
Confidence                       112345888754        3677777777777765

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.82  E-value=2.4e-18  Score=178.98  Aligned_cols=249  Identities=21%  Similarity=0.212  Sum_probs=167.8

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +++..+++|    +++++++|.+.     .+...||++|+..++.++++|||+|++.++.|++......    ......|
T Consensus        38 ~~p~~~~le----~~la~l~g~~~-----a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~----~~~~~~g  104 (369)
T cd00614          38 GNPTVDALE----KKLAALEGGEA-----ALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFE----RLLPKLG  104 (369)
T ss_pred             CChhHHHHH----HHHHHHHCCCC-----EEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHH----HHHhhcC
Confidence            466677888    67888999864     3556899999999999999999999999988766431110    0111234


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .  ++..++.+      |++++++++++ ++|+|++..++||+  ..|+++|+++|+++|+++++|++|..+..     .
T Consensus       105 ~--~~~~v~~~------d~~~l~~~i~~-~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~-----~  170 (369)
T cd00614         105 I--EVTFVDPD------DPEALEAAIKP-ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYL-----Q  170 (369)
T ss_pred             e--EEEEeCCC------CHHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhc-----C
Confidence            3  55554432      68999999987 89999999888886  78999999999999999999999876643     2


Q ss_pred             CCCC-cccEEEeccCcccCCC---CceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  366 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gp---rgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~  366 (520)
                      .++. ++|++++|++|++.|+   ++|+++++++     ++.+++......  .|+......++  .+++.+  ..+...
T Consensus       171 ~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~-----~l~~~l~~~~~~--~g~~~~p~~a~--~~l~~l--~tl~~r  239 (369)
T cd00614         171 RPLELGADIVVHSATKYIGGHSDVIAGVVVGSGE-----ALIQRLRFLRLA--LGTILSPFDAW--LLLRGL--KTLPLR  239 (369)
T ss_pred             ChhhhCCcEEEeccceeccCCCCceEEEEEeCcH-----HHHHHHHHHHHh--hCCCCCHHHHH--HHHcCC--CCHHHH
Confidence            3444 6899999999999875   4799999773     455555432111  11111111121  123322  234567


Q ss_pred             HHHHHHHHHHHHHHHHHCC-CE-EecCC---------------CCCeeEEEEecCCCCCHHHHHHHHhhcCeE
Q 010008          367 QNKVVSNCRALASRLVELG-YK-LVSGG---------------SDNHLVLVDLRPMGIDGARVEKILDMASIT  422 (520)
Q Consensus       367 ~~~i~~na~~l~~~L~~~G-~~-v~~~g---------------t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~  422 (520)
                      .++..+|++.+++.|++.+ +. +..++               ..+.++.+++.  + +.+.+.++++...+.
T Consensus       240 ~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~--~-~~~~~~~f~~~l~~~  309 (369)
T cd00614         240 MERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELK--G-GLEAAKKFLNALKLF  309 (369)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeC--C-CHHHHHHHHHcCCcc
Confidence            8889999999999998853 42 22221               12345555554  2 345566666665554

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.82  E-value=1.2e-18  Score=172.78  Aligned_cols=317  Identities=18%  Similarity=0.182  Sum_probs=198.2

Q ss_pred             cCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHH
Q 010008          100 ASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT  177 (520)
Q Consensus       100 asen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~  177 (520)
                      .|+|.  ..|.++|+|...-.       -+..-||..++...+|    ++++++||...     -+.+.|||+||..++.
T Consensus         5 ~SDn~~g~~~~m~eam~~a~~-------~~~~~YG~D~~~~~~e----~~~ae~~g~~a-----~~Fv~sGT~aN~lal~   68 (342)
T COG2008           5 RSDNVAGPTPEMREALAAANA-------VGDDVYGEDPTTNALE----QRIAELFGKEA-----ALFVPSGTQANQLALA   68 (342)
T ss_pred             ccCccCCCCHHHHHHHHhccc-------cCCCCCCCCHHHHHHH----HHHHHHhCCce-----EEEecCccHHHHHHHH
Confidence            46775  47999999976421       1223477778787777    68889999843     3456899999999999


Q ss_pred             hhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC-CCCCCCHHHHHHHhhh----c--CCcEEEEcC
Q 010008          178 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAIL----F--RPKLIIAGA  250 (520)
Q Consensus       178 all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-~~~~iD~d~le~~i~~----~--~pklIi~~~  250 (520)
                      +.++||+.|++-...|--..      ....+.+.+.   ..++++.+ .++.+++|+|+..+.+    +  .|.+++.+.
T Consensus        69 ~~~~~~~~vi~~~~aHi~~~------E~Ga~~~~~~---~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~  139 (342)
T COG2008          69 AHCQPGESVICHETAHIYTD------ECGAPEFFGG---GQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENT  139 (342)
T ss_pred             HhcCCCCeEEEeccccceec------ccCcHHHHcC---CceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeec
Confidence            99999999998775442111      1123333332   22333443 5799999999997763    1  345555654


Q ss_pred             CC-CCCCCC---HHHHHHHHHHhCCEEEEechhhccc-ccccccCCCC-CcccEEEeccCcccCCCCceEEEeeCCCcch
Q 010008          251 SA-YPRDFD---YPRMRQIADAVGALLMMDMAHISGL-VAASVVADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLG  324 (520)
Q Consensus       251 s~-~p~~~d---~~~i~~ia~~~g~~li~D~Ah~~gl-i~~~~~~~p~-~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~  324 (520)
                      ++ .+++.+   +++|+++||++|+.|+.|+|-.+.. ++.+.....+ .|+|+++++++|.++.|-+.+++++.     
T Consensus       140 ~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~gAiv~gn~-----  214 (342)
T COG2008         140 ATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPVGAIVFGNR-----  214 (342)
T ss_pred             cCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCcceeeeEEEcCH-----
Confidence            44 355554   6677889999999999999865543 3333111112 28999999999998877778888887     


Q ss_pred             hhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCch-hHHHHHHHHHH--HHHHHHHHHH-CCCEEecCCCCCeeEEE
Q 010008          325 VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSN--CRALASRLVE-LGYKLVSGGSDNHLVLV  400 (520)
Q Consensus       325 ~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~-~~~~~~~i~~n--a~~l~~~L~~-~G~~v~~~gt~~~~~~v  400 (520)
                       ++.++.+...-.  .|+ .+...--++++.....+.. +.  .....+|  ++.|++.|.+ .|+++..+ ++++++++
T Consensus       215 -~~~~~a~~~rK~--~Gg-l~~k~r~laA~~~~~l~~~~~~--~~~~Han~mA~~La~~~~~~~G~~~~~~-~~tN~vf~  287 (342)
T COG2008         215 -DFAKRARRWRKR--AGG-LMRKARFLAAQGLYALEDDVWR--LAADHANAMAARLAEGLEAKPGVKLAFP-VETNMVFV  287 (342)
T ss_pred             -HHHHHHHHHHHH--hcc-cHhhhhHHHHHHHHHHhccHHH--HHHHHHHHHHHHHHHhhhhcCCceeccC-CcccEEEE
Confidence             676665432111  111 1222222222222222223 23  3334455  9999999985 69999887 56778888


Q ss_pred             EecCCCCCHHHHHHHHhhcCeEEcCCC-CCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          401 DLRPMGIDGARVEKILDMASITLNKNS-VPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       401 d~~~~g~~~~~~~~~L~~~gI~v~~~~-~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      ++....+      +.|...|+....+. ++..    . .-+|+-|+    +-.+++|+++++..+++++
T Consensus       288 ~l~~~~i------~~l~~~~~~~~~~~~~~~~----~-~~vRfvts----~a~~~edv~~~~~~~~~~~  341 (342)
T COG2008         288 RLPESAI------EALRLAGALFYRGVLIGAH----G-EIVRFVTS----WATSEEDVDELVAAIKALL  341 (342)
T ss_pred             ECChHHH------HHHHhhchhheeeeeccCC----C-ceEEEEee----ccCCHHHHHHHHHHHHHhh
Confidence            7753222      34444444332211 1100    0 25899554    4556999999998887653

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.82  E-value=1e-18  Score=182.38  Aligned_cols=213  Identities=19%  Similarity=0.157  Sum_probs=149.3

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +++..+++|    +.+++++|.+.     .|..+||++|+..++.++++|||+|+++++.|++......     .+...|
T Consensus        51 ~np~~~~lE----~~lA~l~g~~~-----~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~-----~~~~~g  116 (385)
T PRK08574         51 ENPTLRPLE----EALAKLEGGVD-----ALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLK-----SLEKFG  116 (385)
T ss_pred             CCccHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHH-----HhhccC
Confidence            456677888    67889999864     2456889999999999999999999999998876532110     011223


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .  ++..+       .+|++++++++++.++|+|++..++||+  ..|+++|+++|+++|+++++|++|..++...    
T Consensus       117 ~--~v~~~-------~~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~----  183 (385)
T PRK08574        117 V--KVVLA-------YPSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYR----  183 (385)
T ss_pred             c--EEEEE-------CCCHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCC----
Confidence            2  33332       2468999999876579999999999887  7899999999999999999999987775432    


Q ss_pred             CCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  366 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~  366 (520)
                       ++. ++|++++|+||++.|+.   ||+++++++     ++.+++......  .|.......++  .+++.+  ..+..+
T Consensus       184 -~l~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~-----~~~~~~~~~~~~--~g~~~~p~~a~--l~l~~l--~tL~~R  251 (385)
T PRK08574        184 -PLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSG-----EFLEELWEWRRR--LGTIMQPFEAY--LVLRGL--KTLEVR  251 (385)
T ss_pred             -hhhhCCcEEEeeCceeecCCCCceeEEEEECcH-----HHHHHHHHHHHh--cCCCCCHHHHH--HHHccc--CcHHHH
Confidence             333 68999999999998874   686777553     555554322110  12211112222  223332  235667


Q ss_pred             HHHHHHHHHHHHHHHHHC
Q 010008          367 QNKVVSNCRALASRLVEL  384 (520)
Q Consensus       367 ~~~i~~na~~l~~~L~~~  384 (520)
                      .++..+|+..+++.|++.
T Consensus       252 ~~~~~~na~~la~~L~~~  269 (385)
T PRK08574        252 FERQCRNAMAIAEFLSEH  269 (385)
T ss_pred             HHHHHHHHHHHHHHHHcC
Confidence            888889999999999873

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.82  E-value=5.1e-18  Score=192.71  Aligned_cols=301  Identities=19%  Similarity=0.183  Sum_probs=201.2

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh----CCCCC----EEEEcCCCCCcccccccccccccccc
Q 010008          139 ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI----LKPHD----RIMGLDLPHGGHLSHGFMTPKRRVSG  210 (520)
Q Consensus       139 ~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al----l~pGD----~Vl~~~~~~~ghls~g~~~~~~~v~~  210 (520)
                      +++...++++++++|.+.    +.+++.+|++|+++.++++    .++||    +|++++..|+++..        ...+
T Consensus       542 ~~i~e~q~~l~eltG~d~----~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~--------sa~~  609 (954)
T PRK05367        542 ELIDQLEAWLAEITGYDA----VSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPA--------SAVM  609 (954)
T ss_pred             HHHHHHHHHHHHHHCCCC----EEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHH--------HHHH
Confidence            444456699999999985    4677777888886655544    36776    58888877665431        2334


Q ss_pred             ccceEEEEEcccCCCCCCCCHHHHHHHhhhc--CCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccc
Q 010008          211 TSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAA  286 (520)
Q Consensus       211 ~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~--~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~  286 (520)
                      .|.  +++.++++ +++.+|+++|+++++++  ++.+|++.++++.+  ..|+++|+++|+++|+++++|+||..+++..
T Consensus       610 ~G~--~vv~v~~d-~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l  686 (954)
T PRK05367        610 AGM--KVVVVACD-ENGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGL  686 (954)
T ss_pred             CCC--EEEEECCC-CCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccCC
Confidence            454  67777776 46899999999999764  35566676666555  3689999999999999999999997665532


Q ss_pred             cccCCCCC-cccEEEeccCcccCCCCc------eEEEeeCCCcchhhHHHhhccc-----CCCCCCCCChHH----HHHH
Q 010008          287 SVVADPFK-YCDVVTTTTHKSLRGPRG------GMIFFKKDPVLGVELESAINNA-----VFPGLQGGPHNH----TIGG  350 (520)
Q Consensus       287 ~~~~~p~~-~aDiv~~S~hK~l~Gprg------G~I~~~~~~~~~~~l~~~i~~~-----~~p~~~g~p~~~----~iaa  350 (520)
                      .   .|.. ++|++++++||||++|.|      |++.+++      .+...+...     .+....|.....    ...+
T Consensus       687 ~---~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~------~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~  757 (954)
T PRK05367        687 A---RPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKA------HLAPFLPGHPVQIAGGETGIGAVSAAPFGSASIL  757 (954)
T ss_pred             C---ChhhcCCCEEEecCcccCCCCcCCCCCceEEEeecc------cccccCCCCccCcCCCCCCcCcchhHHHHHHHHH
Confidence            1   3323 799999999999865553      5888876      233222111     111111211111    1111


Q ss_pred             H-H-HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecC---CCCCeeEEEEecCC----CCCHHHHHHHHhhcCe
Q 010008          351 L-A-VCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG---GSDNHLVLVDLRPM----GIDGARVEKILDMASI  421 (520)
Q Consensus       351 l-a-~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~---gt~~~~~~vd~~~~----g~~~~~~~~~L~~~gI  421 (520)
                      . + ..+..+..+++++..++...+++++++.|.+ ++++...   +...|-+++|+++.    +++..++.+.|.+.||
T Consensus       758 ~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~-~~~~~~~~~~~~~~~e~i~~~~~~~~~~g~~~~di~krL~d~G~  836 (954)
T PRK05367        758 PISWMYIRMMGAEGLRQATEVAILNANYIAKRLKD-HYPVLYTGANGRVAHECILDLRPLKESTGITVDDIAKRLIDYGF  836 (954)
T ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh-hcCccccCCCCCcccceEEEeecccccCCCCHHHHHHHHHHCCC
Confidence            1 1 2244444556788888888999999999976 4554332   22245566777431    4566889999999999


Q ss_pred             EEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHHHHH
Q 010008          422 TLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEA  474 (520)
Q Consensus       422 ~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~~~~  474 (520)
                      .....+.|      .++.+||.....++    ++|++++++++..+.....++
T Consensus       837 ~~~t~~~p------v~~~l~i~ptE~~s----~~elDr~~~al~~i~~e~~~~  879 (954)
T PRK05367        837 HAPTMSFP------VAGTLMVEPTESES----KAELDRFCDAMIAIRAEIDEV  879 (954)
T ss_pred             eEeecCCc------cCCEEEEEeeecCC----HHHHHHHHHHHHHHHHHHHHh
Confidence            87542223      36789998776554    899999999998887766554

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.82  E-value=9.4e-18  Score=177.38  Aligned_cols=316  Identities=18%  Similarity=0.218  Sum_probs=194.7

Q ss_pred             CCCCChHHHHHHHhhhhhccCCC-CCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh
Q 010008          101 SENFTSRAVMEAVGSCLTNKYSE-GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI  179 (520)
Q Consensus       101 sen~~~~~V~ea~~s~l~~~y~~-G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al  179 (520)
                      +-.++|+.|++++...+.+ |.. +|.-..-..| ...+.+|    +.+++++|++..     +.++||+.|+.+++.+ 
T Consensus        89 g~s~l~~~vieAv~~~~~~-y~~l~~~l~~g~~g-~r~~~le----~~lA~l~gae~a-----lvv~sg~aAi~l~l~~-  156 (454)
T TIGR00474        89 GRAPLAEEAIEAVTDAARG-YSNLEYDLETGKRG-SRYSHVE----GLLCELTGAEDA-----LVVNNNAAAVLLALNT-  156 (454)
T ss_pred             CCCCCCHHHHHHHHHHHhc-ccchhccccccccc-hHHHHHH----HHHHHHhCCCcE-----EEECCHHHHHHHHHHH-
Confidence            3456799999999887764 321 1110000112 2234444    788999999863     3458899999888854 


Q ss_pred             CCCCCEEEEcCCC---CCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC-
Q 010008          180 LKPHDRIMGLDLP---HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-  255 (520)
Q Consensus       180 l~pGD~Vl~~~~~---~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~-  255 (520)
                      +.+||+|++.+..   +|+.+...     ..+...|.  +++.++.+   ...|++++++++++ +|++|++.+++|++ 
T Consensus       157 l~~GdeVIvs~~e~v~~ggs~~i~-----~~~~~~G~--~~~~v~~~---~~~~l~dle~aI~~-~T~lv~~~h~sN~~~  225 (454)
T TIGR00474       157 LAKGKEVIVSRGELVEIGGSFRIP-----DVMEQSGA--KLVEVGTT---NRTHLKDYEDAITE-NTALLLKVHTSNYRI  225 (454)
T ss_pred             hCCcCEEEECCChhhhhcchhhHH-----HHHHHcCC--EEEEeCCC---CCCCHHHHHHhcCc-CCEEEEEEccCcccc
Confidence            6899999998865   33332211     11233454  55565542   34689999999988 89998887665542 


Q ss_pred             -----CCCHHHHHHHHHHhCCEEEEechhhcccccc----cc--cC---CCCC-cccEEEeccCcccCCCCceEEEeeCC
Q 010008          256 -----DFDYPRMRQIADAVGALLMMDMAHISGLVAA----SV--VA---DPFK-YCDVVTTTTHKSLRGPRGGMIFFKKD  320 (520)
Q Consensus       256 -----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~----~~--~~---~p~~-~aDiv~~S~hK~l~GprgG~I~~~~~  320 (520)
                           ..|+++|+++|+++|+++++|.+  +|.+..    +.  .|   .++. ++|++++|+||+|.||.+|++++++ 
T Consensus       226 ~G~~~~~dl~~I~~la~~~g~~vivD~~--sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~~G~i~g~~-  302 (454)
T TIGR00474       226 VGFTEEVSIAELVALGREHGLPVMEDLG--SGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQAGIIVGKK-  302 (454)
T ss_pred             cCCCCCCCHHHHHHHHHHcCCeEEEECC--CcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCeEEEEEECH-
Confidence                 67999999999999999999974  454311    11  11   2223 7999999999999999999999988 


Q ss_pred             CcchhhHHHhhcccCCCC-CCCCChHHHHHHHHHHHHHhcCch--h---------HHHHHHHHHHHHHHHHHHHH---CC
Q 010008          321 PVLGVELESAINNAVFPG-LQGGPHNHTIGGLAVCLKHAQSPE--F---------KVYQNKVVSNCRALASRLVE---LG  385 (520)
Q Consensus       321 ~~~~~~l~~~i~~~~~p~-~~g~p~~~~iaala~al~~~~~~~--~---------~~~~~~i~~na~~l~~~L~~---~G  385 (520)
                           ++.+++......- +.  ..-..++++...+.....+.  +         ....++..+++..+++.|.+   .|
T Consensus       303 -----~~i~~l~~~~l~r~lr--~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~  375 (454)
T TIGR00474       303 -----ELIERLKKNPLTRALR--VDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALGPG  375 (454)
T ss_pred             -----HHHHhhhhchhHHHHh--hChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhccCC
Confidence                 5555543211100 00  00113345544554443322  0         11234777889999999976   34


Q ss_pred             C--EEec------CCC--CCe--eEEEEecCCCCCHHHHHHHHhhcC--eEEcCCCCCCCCCCCCCCEEEEccCCccccC
Q 010008          386 Y--KLVS------GGS--DNH--LVLVDLRPMGIDGARVEKILDMAS--ITLNKNSVPGDKSALVPGGIRIGSPAMTTRG  451 (520)
Q Consensus       386 ~--~v~~------~gt--~~~--~~~vd~~~~g~~~~~~~~~L~~~g--I~v~~~~~Pg~~~~~~~~giRig~~~~tt~g  451 (520)
                      +  .++.      +|+  ...  -..+.+.+.+.+..++++.|++..  |.++.          ..+.+-+-.     |-
T Consensus       376 ~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~~~~~~~l~~~lr~~~~~ii~r~----------~~~~~~ld~-----r~  440 (454)
T TIGR00474       376 FELEIVPGLSQVGGGSLPDERLPSYAVTLTPDGLSAEKLEARLRELPPPIIGRI----------EDDRFLLDL-----RT  440 (454)
T ss_pred             ceEEEEEcCCcccCCCCcCCCCCeEEEEEecCCCCHHHHHHHHhcCCCCEEEEE----------ECCEEEEEe-----Cc
Confidence            4  3332      222  111  123445555678889999998766  44321          123444432     44


Q ss_pred             CCHHHHHHHHHHH
Q 010008          452 FSEKEFVAIADFI  464 (520)
Q Consensus       452 ~~~~d~~~la~~i  464 (520)
                      +.++|++.+++.+
T Consensus       441 ~~~~~~~~~~~~~  453 (454)
T TIGR00474       441 LLEDEEELLIEAL  453 (454)
T ss_pred             CCHHHHHHHHHHh
Confidence            6789999998876

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.82  E-value=4.2e-18  Score=189.24  Aligned_cols=304  Identities=20%  Similarity=0.244  Sum_probs=196.1

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC-------CC-CEEEEcCCCCCccccccccccccc
Q 010008          136 YIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK-------PH-DRIMGLDLPHGGHLSHGFMTPKRR  207 (520)
Q Consensus       136 ~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~-------pG-D~Vl~~~~~~~ghls~g~~~~~~~  207 (520)
                      +.+.+.++. +++++++|.+.    +.+++.||+.|++++++++-.       ++ ++|+++...|+.+..        .
T Consensus       541 ~lq~i~elq-~~l~eLtGmd~----~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpa--------s  607 (954)
T PRK12566        541 YRAMIDELE-AWLCAITGFDA----ICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPA--------S  607 (954)
T ss_pred             HHHHHHHHH-HHHHHHHCCCe----EeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHH--------H
Confidence            344554433 79999999997    589999999999888887632       33 567777766654421        1


Q ss_pred             cccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCc--EEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhccc
Q 010008          208 VSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK--LIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGL  283 (520)
Q Consensus       208 v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pk--lIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gl  283 (520)
                      ....|  ++++.++.| ++|.+|+++|++++++.+++  +|.+.++++.+  ..|+++|+++|+++|+++++|+||..++
T Consensus       608 a~~~G--ieVv~Vp~D-~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~  684 (954)
T PRK12566        608 AQMAG--MRVVIVECD-PDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQ  684 (954)
T ss_pred             HHHCC--CEEEEeccC-CCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhc
Confidence            22334  477777777 57899999999999744444  55566666554  4569999999999999999999997665


Q ss_pred             ccccccCCCCC-cccEEEeccCcccCCCCc-eE-----EEeeCCCcchhhHHHhhcccC---CCC---CCCCC----hHH
Q 010008          284 VAASVVADPFK-YCDVVTTTTHKSLRGPRG-GM-----IFFKKDPVLGVELESAINNAV---FPG---LQGGP----HNH  346 (520)
Q Consensus       284 i~~~~~~~p~~-~aDiv~~S~hK~l~Gprg-G~-----I~~~~~~~~~~~l~~~i~~~~---~p~---~~g~p----~~~  346 (520)
                      ...   ..|-. ++||+++++||||++|+| |.     +.+++      .+...+...-   ..+   -.|+-    ...
T Consensus       685 ~~l---~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~------~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gs  755 (954)
T PRK12566        685 VGL---ARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRA------HLAPFVANHPVVPVEGPDPNNGAVSAAPWGS  755 (954)
T ss_pred             cCC---CChhhcCCCEEEecCCcccCcCccCCCCccchhhhhh------hhhhhccCCCCcCCCCCCCCCCceeecccch
Confidence            532   22333 899999999999988876 33     33333      2222222110   000   01211    111


Q ss_pred             -HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCC-C--eeEEEEecC----CCCCHHHHHHHHhh
Q 010008          347 -TIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD-N--HLVLVDLRP----MGIDGARVEKILDM  418 (520)
Q Consensus       347 -~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~-~--~~~~vd~~~----~g~~~~~~~~~L~~  418 (520)
                       .++-.+.++-.++..+.++.......|+.++++.|.+ ++.+...+.+ .  |-+.+++.+    .+.+..++.++|.+
T Consensus       756 a~~l~~A~~Yi~~lG~eLk~aa~~ailnAnYla~rL~~-~~~v~~~~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL~d  834 (954)
T PRK12566        756 ASILPISWMYIAMMGPQLADASEVAILSANYLANQLGG-AFPVLYRGRNERVAHECILDLRPLKAQTGISEEDVAKRLMD  834 (954)
T ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHhHh-hCCCCcCCCCCCeeeEEEEEccccccccCCCHHHHHHHHHH
Confidence             1222222222222233445555567799999999976 5554432211 2  445556542    24666778888889


Q ss_pred             cCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 010008          419 ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAK  475 (520)
Q Consensus       419 ~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~~~~~  475 (520)
                      .||..-.-++|      .++++||+.....+    ++|++++++.+..+.+...++.
T Consensus       835 ~Gihapt~~fP------v~~~LmIepTE~es----keEIDrf~eAL~~I~~e~~~v~  881 (954)
T PRK12566        835 YGFHAPTMSFP------VPGTLMVEPTESES----KAELDRFVEAMLSIRAEIGKVQ  881 (954)
T ss_pred             CCcEEeEEeec------cCCEEEEEeeeeCC----HHHHHHHHHHHHHHHHHHHHHH
Confidence            99987442233      36789998776665    8999999999999888776554

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.82  E-value=2e-18  Score=180.68  Aligned_cols=291  Identities=17%  Similarity=0.095  Sum_probs=188.3

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +++.++++|    +++++++|.+.     -+...||++|+.+++.++++|||+|+++++.|++......    ......|
T Consensus        63 ~~pt~~~Le----~~lA~l~g~~~-----~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~----~~~~~~G  129 (394)
T PRK07050         63 ATPTSLALA----QRLAEIEGGRH-----ALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGE----WLARDFG  129 (394)
T ss_pred             CCHHHHHHH----HHHHHHhCCCe-----EEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHH----HHHHhcC
Confidence            566677777    67888999764     2445677899999999999999999999998876432110    0112234


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .  ++..++.+      |.+++++++++ +||+|++++|+||+  ..|+++|+++|+++|+++++|++|..+...     
T Consensus       130 i--~v~~vd~~------~~~~l~~~i~~-~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~~-----  195 (394)
T PRK07050        130 I--TVRFYDPL------IGAGIADLIQP-NTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAF-----  195 (394)
T ss_pred             e--EEEEECCC------CHHHHHHhcCC-CCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCccccccc-----
Confidence            3  55554321      45788988887 89999999998886  779999999999999999999998776542     


Q ss_pred             CCCC-cccEEEeccCcccCCC---CceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  366 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gp---rgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~  366 (520)
                      .|+. ++|+++.|++|++.|.   .+|+++++++     ++.+++......  .|. ......+ ..+++.+  ..+..+
T Consensus       196 ~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~-----~~~~~~~~~~~~--~G~-~~~~~~a-~l~lr~l--~tl~~R  264 (394)
T PRK07050        196 KPFEHGVDISVQALTKYQSGGSDVLMGATITADA-----ELHAKLKLARMR--LGI-GVSADDC-SLVLRGL--PSLQVR  264 (394)
T ss_pred             CHHHcCCeEEEEECCceecCCCCeeEEEEEECCH-----HHHHHHHHHHHh--cCC-CCCHHHH-HHHHcCC--CcHHHH
Confidence            3343 6899999999999654   3788888764     666666432221  111 1111111 1233322  245567


Q ss_pred             HHHHHHHHHHHHHHHHHC-CCE-EecCC---------------CCCeeEEEEecCCCCCH---HHHHHHHhhcCeEEcCC
Q 010008          367 QNKVVSNCRALASRLVEL-GYK-LVSGG---------------SDNHLVLVDLRPMGIDG---ARVEKILDMASITLNKN  426 (520)
Q Consensus       367 ~~~i~~na~~l~~~L~~~-G~~-v~~~g---------------t~~~~~~vd~~~~g~~~---~~~~~~L~~~gI~v~~~  426 (520)
                      .++..+|+..+++.|.+. ++. +..++               ...+++.+.+.. +.+.   ..+.+.|+..+|.++.+
T Consensus       265 l~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~-~~~~~~~~~~~~~l~~~~~~~s~G  343 (394)
T PRK07050        265 LAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDE-RYSPAQVDAFVEALELFAIGWSWG  343 (394)
T ss_pred             HHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECC-CCCHHHHHHHHHcCCCCeeccccC
Confidence            888899999999999873 443 22221               123455555532 2222   34555566677776654


Q ss_pred             C----C-CCCC---C----CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          427 S----V-PGDK---S----ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       427 ~----~-Pg~~---~----~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      .    + |...   .    ....+-||++..        -||.+.+.+-|.+++..
T Consensus       344 ~~~sl~~~~~~~~~~~~~~~~~~~~iR~svG--------lE~~~dl~~dl~~al~~  391 (394)
T PRK07050        344 GACSLAMPYDVASMRTAKWPHRGTLVRLYIG--------LEDEADLIADLEQALEA  391 (394)
T ss_pred             CccceEeeCcccccchhhcCCCCCEEEEEeC--------cCCHHHHHHHHHHHHHH
Confidence            2    1 2110   0    012246898864        36788778777777764

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.82  E-value=2e-18  Score=180.16  Aligned_cols=212  Identities=21%  Similarity=0.247  Sum_probs=148.2

Q ss_pred             chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccc
Q 010008          134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  213 (520)
Q Consensus       134 ~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~  213 (520)
                      ++..+++|    +++++++|++.     .+...||++|+.+++.++++|||+|++.++.|++.+....    ..+...|.
T Consensus        53 ~p~~~~le----~~la~l~g~~~-----~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~----~~~~~~g~  119 (380)
T TIGR01325        53 NPTVAAFE----ERIAALEGAER-----AVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFIS----EILPRFGI  119 (380)
T ss_pred             CchHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHH----HHHHHhCC
Confidence            45567777    67889999864     2456889999999999999999999998887765432110    11222343


Q ss_pred             eEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCC
Q 010008          214 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD  291 (520)
Q Consensus       214 ~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~  291 (520)
                        ++..++.      .|++++++++++ ++|+|++..++||.  ..|+++|.++|+++|+++++|+++..+..     ..
T Consensus       120 --~v~~v~~------~d~~~l~~~i~~-~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~-----~~  185 (380)
T TIGR01325       120 --EVSFVDP------TDLNAWEAAVKP-NTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVL-----QQ  185 (380)
T ss_pred             --EEEEECC------CCHHHHHHhcCC-CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccccc-----CC
Confidence              4555443      278999998877 89999999888875  78999999999999999999999765432     23


Q ss_pred             CCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHH
Q 010008          292 PFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ  367 (520)
Q Consensus       292 p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~  367 (520)
                      |++ ++|++++|+||++.|+.   ||++++++      ++.+.+......  .|+... ...+ +.+++.+  ..+....
T Consensus       186 pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~------~~~~~l~~~~~~--~g~~~~-p~~a-~~~l~~l--~tl~~r~  253 (380)
T TIGR01325       186 PLKLGADVVVYSATKHIDGQGRVMGGVIAGSE------ELMAEVAVYLRH--TGPAMS-PFNA-WVLLKGL--ETLSLRM  253 (380)
T ss_pred             chhhCCCEEEeeccceecCCCCeEEEEEEeCH------HHHHHHHHHHHh--hCCCCC-HHHH-HHHHhcc--CcHHHHH
Confidence            444 78999999999998752   58888877      555554432211  122111 1111 1233322  2345678


Q ss_pred             HHHHHHHHHHHHHHHHC
Q 010008          368 NKVVSNCRALASRLVEL  384 (520)
Q Consensus       368 ~~i~~na~~l~~~L~~~  384 (520)
                      ++..++++.+++.|++.
T Consensus       254 ~~~~~~a~~la~~L~~~  270 (380)
T TIGR01325       254 QKQFDSALAIAEWLQAQ  270 (380)
T ss_pred             HHHHHHHHHHHHHHHcC
Confidence            88899999999999884

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.82  E-value=4.1e-18  Score=174.63  Aligned_cols=287  Identities=21%  Similarity=0.225  Sum_probs=180.7

Q ss_pred             ccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHH
Q 010008           94 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PAN  172 (520)
Q Consensus        94 ~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~  172 (520)
                      +.++|..++|+.++.+.+...+.+ .    .||.      .. ..+++    +++++++|.+++    +|..++|+ +++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~-~----~y~~------~~-~~~lr----~~la~~~~~~~~----~i~~t~G~~~~i   77 (330)
T TIGR01140        18 DWLDFSTGINPLGPPVPPIPASAW-A----RYPD------PE-YDELR----AAAAAYYGLPAA----SVLPVNGAQEAI   77 (330)
T ss_pred             heeEccccCCCCCCChhhcchHHH-h----hCCC------cc-HHHHH----HHHHHHhCCChh----hEEECCCHHHHH
Confidence            457777787765544444322221 1    2332      11 23444    678888998865    56678988 676


Q ss_pred             HHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 010008          173 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA  252 (520)
Q Consensus       173 ~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~  252 (520)
                      .++. .++.+| .|++.+|.|.++..        .....|.  +++.++        |++++++.+.  ++++|++..|+
T Consensus        78 ~~~~-~~l~~g-~vl~~~p~y~~~~~--------~~~~~g~--~~~~~~--------d~~~l~~~~~--~~~~v~i~~p~  135 (330)
T TIGR01140        78 YLLP-RLLAPG-RVLVLAPTYSEYAR--------AWRAAGH--EVVELP--------DLDRLPAALE--ELDVLVLCNPN  135 (330)
T ss_pred             HHHH-HHhCCC-eEEEeCCCcHHHHH--------HHHHcCC--EEEEeC--------CHHHHHhhcc--cCCEEEEeCCC
Confidence            6654 446788 68888887755421        1223343  555543        7899998883  57888888888


Q ss_pred             CCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCC--CcccEEEeccCccc--CCCCceEEEeeCCCcc
Q 010008          253 YPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF--KYCDVVTTTTHKSL--RGPRGGMIFFKKDPVL  323 (520)
Q Consensus       253 ~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~--~~aDiv~~S~hK~l--~GprgG~I~~~~~~~~  323 (520)
                      ||+  ..+   +++|.++|+++|+++|+|++|. ++........-.  ...++++.|+||++  +|.|.||+++++    
T Consensus       136 NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~----  210 (330)
T TIGR01140       136 NPTGRLIPPETLLALAARLRARGGWLVVDEAFI-DFTPDASLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHP----  210 (330)
T ss_pred             CCCCCCCCHHHHHHHHHHhHhcCCEEEEECccc-ccCCccchhhHhccCCCEEEEEecchhhcCchhhhhheeCCH----
Confidence            887  666   6677788899999999999964 333221000000  12358999999987  567779999987    


Q ss_pred             hhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHHHHHHHHCC-CEEecCCCCCeeEEEE
Q 010008          324 GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF-KVYQNKVVSNCRALASRLVELG-YKLVSGGSDNHLVLVD  401 (520)
Q Consensus       324 ~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~-~~~~~~i~~na~~l~~~L~~~G-~~v~~~gt~~~~~~vd  401 (520)
                        ++.+++.... +.+ + .+....+++...++   ..++ +...+++..+++.+.+.|++.+ +++..+  ...++|++
T Consensus       211 --~~~~~l~~~~-~~~-~-~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~~f~~~~  280 (330)
T TIGR01140       211 --ALLARLREAL-GPW-T-VNGPARAAGRAALA---DTAWQAATRARLAAERARLAALLARLGGLEVVGG--TALFLLVR  280 (330)
T ss_pred             --HHHHHHHhcC-CCC-C-chHHHHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHHhCCCceECCC--CCeEEEEE
Confidence              6777666543 222 1 12222222222232   3344 5667888889999999998876 555432  34667777


Q ss_pred             ecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccC
Q 010008          402 LRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSP  445 (520)
Q Consensus       402 ~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~  445 (520)
                      +.    +..++.+.|.+.||.+.    ||.. +...+++|||++.
T Consensus       281 ~~----~~~~l~~~l~~~gi~v~----pg~~f~~~~~~~iRi~~~  317 (330)
T TIGR01140       281 TP----DAAALHEALARRGILIR----DFDNFPGLDPRYLRFALP  317 (330)
T ss_pred             cC----CHHHHHHHHHHCCEEEE----ECCCCCCCCCCEEEEEec
Confidence            64    34677788888999994    4443 1223568999864

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.82  E-value=2.3e-18  Score=180.38  Aligned_cols=288  Identities=18%  Similarity=0.201  Sum_probs=185.5

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +++..+++|    +++++++|.+.     .|.++||++|+.+++.++++|||+|++.++.|++......    ..+...|
T Consensus        62 ~~p~~~~le----~~lA~l~g~~~-----~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~----~~~~~~G  128 (398)
T PRK08249         62 TNPTVQAFE----EKVRILEGAEA-----ATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFT----EFLPRMG  128 (398)
T ss_pred             CChHHHHHH----HHHHHHhCCCe-----EEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHH----HHHhhCC
Confidence            456667777    67889999865     3667899999999999999999999999998875421110    0112234


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .  ++..++      ..|++++++++++ ++|+|+++.|+||+  ..|+++|.++|+++|+++++|++|..+..     .
T Consensus       129 i--~v~~vd------~~d~e~l~~~i~~-~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~-----~  194 (398)
T PRK08249        129 V--DVTLCE------TGDHEQIEAEIAK-GCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPIN-----Q  194 (398)
T ss_pred             e--EEEEcC------CCCHHHHHHhcCC-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCcccc-----C
Confidence            3  444433      2689999999988 89999999899886  78999999999999999999999765432     1


Q ss_pred             CCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  366 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~  366 (520)
                      .|+. ++|++++|+||++.|+.   ||+++.++      ++.+++.....  ..|.......+++  +++.+  ..+...
T Consensus       195 ~~l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~------~l~~~l~~~~~--~~g~~~s~~~a~l--~l~~l--~tL~~R  262 (398)
T PRK08249        195 NPLALGADLVIHSATKFLSGHADALGGVVCGSK------ELMEQVYHYRE--INGATMDPMSAYL--ILRGM--KTLKLR  262 (398)
T ss_pred             CchhhCCCEEeccCceecCCCCCceEEEEECCH------HHHHHHHHHHH--hcCCCCCHHHHHH--HHhCc--chHHHH
Confidence            2333 79999999999997753   58887765      56665543211  1122122222222  22222  234567


Q ss_pred             HHHHHHHHHHHHHHHHHC-CCE-EecCCCC---------------CeeEEEEecCCCCCHHHHHHHHhhcCeE---EcCC
Q 010008          367 QNKVVSNCRALASRLVEL-GYK-LVSGGSD---------------NHLVLVDLRPMGIDGARVEKILDMASIT---LNKN  426 (520)
Q Consensus       367 ~~~i~~na~~l~~~L~~~-G~~-v~~~gt~---------------~~~~~vd~~~~g~~~~~~~~~L~~~gI~---v~~~  426 (520)
                      .++..+|++.+++.|.+. .+. |..+|-.               +.++.+++.  + +.+.+.++++...+.   ++.+
T Consensus       263 ~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~--~-~~~~~~~f~~~l~l~~~~~s~G  339 (398)
T PRK08249        263 VRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLK--G-GMDTVKRLLPKLRYAHRAANLG  339 (398)
T ss_pred             HHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEc--C-CHHHHHHHHHhCCcceEccCCC
Confidence            788899999999999873 332 3333211               224445553  2 234455666554443   3322


Q ss_pred             C------CCCCCC------------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          427 S------VPGDKS------------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       427 ~------~Pg~~~------------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      .      .|-..+            ...++-||++..        -||.+.+.+-|.+++..
T Consensus       340 ~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG--------lE~~~dl~~dl~~al~~  393 (398)
T PRK08249        340 AVETIYGPARTTSHVENTLEERAALGIPEGLVRISVG--------IEDTEDLIADLEQAFAH  393 (398)
T ss_pred             CCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec--------cCCHHHHHHHHHHHHHH
Confidence            1      121110            011356888754        37788888888887764

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.81  E-value=2.5e-18  Score=176.16  Aligned_cols=262  Identities=17%  Similarity=0.169  Sum_probs=170.3

Q ss_pred             HHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC
Q 010008          146 KRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE  224 (520)
Q Consensus       146 ~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~  224 (520)
                      +.+++.+|.+      +|.+++|+ +|+..++  .+.|||+|++.+|.|.++.        ..+...|.  +++.+++  
T Consensus        56 ~~ia~~~~~~------~I~it~Gs~~al~~~~--~~~~gd~v~v~~P~y~~~~--------~~~~~~g~--~~~~v~~--  115 (330)
T PRK05664         56 AAARAYYGAP------QLLPVAGSQAAIQALP--RLRAPGRVGVLSPCYAEHA--------HAWRRAGH--QVRELDE--  115 (330)
T ss_pred             HHHHHHhCCC------CEEECcCHHHHHHHHH--HccCCCEEEEcCCChHHHH--------HHHHHcCC--eEEEech--
Confidence            5677778763      56679999 7877664  4689999999999875442        12344555  5556544  


Q ss_pred             CCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-ccc-
Q 010008          225 STGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCD-  297 (520)
Q Consensus       225 ~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aD-  297 (520)
                             +++++.+.  ++|+++++.|+||+  .++   +++|.++|+++|++||+|+++. ........ ..+. +.. 
T Consensus       116 -------~~~~~~~~--~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~-~~~~~~s~-~~~~~~~~v  184 (330)
T PRK05664        116 -------AEVEAALD--SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFM-DNTPQHSL-AACAHRPGL  184 (330)
T ss_pred             -------hhHhhhhc--CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcc-cCCCcccc-cccccCCCE
Confidence                   24555553  68888888899997  555   5556666788999999999853 32211000 0111 222 


Q ss_pred             EEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q 010008          298 VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCR  375 (520)
Q Consensus       298 iv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~  375 (520)
                      +++.|++|++  +|.|.||+++++      ++.+.+.....+..  .....+. +...+|..  ....+...+++.++++
T Consensus       185 i~~~SfSK~~gl~GlRiG~~v~~~------~l~~~~~~~~~~~~--~~~~~~~-~~~~~L~~--~~~~~~~~~~~~~~r~  253 (330)
T PRK05664        185 IVLRSFGKFFGLAGARLGFVLAEP------ALLRALAELLGPWT--VSGPTRW-LAQAALAD--TPWQRRQRERLLAASQ  253 (330)
T ss_pred             EEEeeccccccCCCcceEEEEeCH------HHHHHHHHhcCCCC--CCHHHHH-HHHHHHhC--hHHHHHHHHHHHHHHH
Confidence            7889999986  799999999987      67777665433221  1122222 22234432  1223566778888899


Q ss_pred             HHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHH
Q 010008          376 ALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK  455 (520)
Q Consensus       376 ~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~  455 (520)
                      .+.+.|++.|++.. + ....++|+.+.    +..++.+.|.++||.|..    +.    .+++|||++..      +.+
T Consensus       254 ~l~~~L~~~~~~~~-~-~~~~f~~~~~~----~~~~~~~~l~~~gi~v~~----f~----~~~~iRis~~~------~~~  313 (330)
T PRK05664        254 RLAALLRRHGLTPA-G-GCALFQWVRTE----DAAALHEFLARRGILTRL----FE----QPASLRFGLPA------DEA  313 (330)
T ss_pred             HHHHHHHHCCCccc-C-CcceEEEEecC----CHHHHHHHHHHCCeEEEE----CC----CCCeEEEECCC------CHH
Confidence            99999998877532 2 22344555442    567788889999999952    11    24699998652      368


Q ss_pred             HHHHHHHHHHHHHH
Q 010008          456 EFVAIADFIHEGVE  469 (520)
Q Consensus       456 d~~~la~~i~~~l~  469 (520)
                      +++++.+.++++.+
T Consensus       314 ~~~~l~~al~~~~~  327 (330)
T PRK05664        314 DWARLDQALLAYRK  327 (330)
T ss_pred             HHHHHHHHHHHHHh
Confidence            89999998877654

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.81  E-value=4.4e-18  Score=176.79  Aligned_cols=289  Identities=13%  Similarity=0.091  Sum_probs=186.5

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      |++..+.+|    ++++++-|.+.     -+...||+.|+.+++.++++|||+|++.+..|++......    ..+...|
T Consensus        60 ~nPt~~~le----~~la~LEg~~~-----a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~----~~l~~~G  126 (395)
T PRK08114         60 GTLTHFSLQ----EAMCELEGGAG-----CALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCS----KILSKLG  126 (395)
T ss_pred             CChhHHHHH----HHHHHHhCCCe-----EEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHH----HHHHhcC
Confidence            678888888    67888888875     2456789999999999999999999998877765432110    0111234


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhC--CEEEEechhhcccccccc
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVG--ALLMMDMAHISGLVAASV  288 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g--~~li~D~Ah~~gli~~~~  288 (520)
                      .  ++..++      ..|.+++++++++ +||+|++..++||+  ..|+++|+++|+++|  +++++|.++..++.    
T Consensus       127 i--~v~~vd------~~d~~~l~~~l~~-~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~----  193 (395)
T PRK08114        127 V--TTTWFD------PLIGADIAKLIQP-NTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL----  193 (395)
T ss_pred             c--EEEEEC------CCCHHHHHHhcCC-CceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc----
Confidence            3  444433      2478999999988 89999999999887  789999999999985  99999999887654    


Q ss_pred             cCCCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhH
Q 010008          289 VADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK  364 (520)
Q Consensus       289 ~~~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~  364 (520)
                       ..|++ ++|++++|.||++.|+.   +|+++.++      ++.+++.....  ..|+.....-+-  ..++.+.  -+.
T Consensus       194 -~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~------~~~~~l~~~~~--~~G~~~~p~~a~--l~~rgl~--TL~  260 (395)
T PRK08114        194 -FKALDFGIDISIQAGTKYLVGHSDAMIGTAVANA------RCWEQLRENSY--LMGQMVDADTAY--MTSRGLR--TLG  260 (395)
T ss_pred             -cCHHHcCCcEEEEcCcccccCCCcceeEEEEcCH------HHHHHHHHHHH--hccCCCCHHHHH--HHHcCCC--cHH
Confidence             34555 79999999999999984   48777665      44444432111  122211111111  1223222  245


Q ss_pred             HHHHHHHHHHHHHHHHHHHC-CC-EEecCCC---------------CCeeEEEEecCCCCCHHHHHHHHhhcCe---EEc
Q 010008          365 VYQNKVVSNCRALASRLVEL-GY-KLVSGGS---------------DNHLVLVDLRPMGIDGARVEKILDMASI---TLN  424 (520)
Q Consensus       365 ~~~~~i~~na~~l~~~L~~~-G~-~v~~~gt---------------~~~~~~vd~~~~g~~~~~~~~~L~~~gI---~v~  424 (520)
                      -++++..+|+..+++.|++. .+ +|..++-               .+.++.+++.. +.+.+.+.++++...+   .++
T Consensus       261 lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~-~~~~~~~~~f~~~l~l~~~a~S  339 (395)
T PRK08114        261 VRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKK-KLTDEQLANYLDNFSLFSMAYS  339 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecC-cccHHHHHHHHHhCCcceeecc
Confidence            67889999999999999884 33 2333321               12345555542 1123556666665444   443


Q ss_pred             CCC----C----CCCCCC--------CCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          425 KNS----V----PGDKSA--------LVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       425 ~~~----~----Pg~~~~--------~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      .+.    +    |-....        ...+-||++..        -||.+.+.+-|.+++.
T Consensus       340 lGg~~SLi~~~~~~~~~~~~~~~~~~~~~~liRlSvG--------lEd~~DLi~Dl~~Al~  392 (395)
T PRK08114        340 WGGFESLILANQPEEIAAIRPAGEVDFTGTLIRLHIG--------LEDVDDLIADLAAGFA  392 (395)
T ss_pred             cCCccceeccCCchhhhccCChhHhcCCCCeEEEEec--------cCCHHHHHHHHHHHHH
Confidence            321    0    100000        12256899865        3677777777777765

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.81  E-value=1.9e-17  Score=185.21  Aligned_cols=301  Identities=20%  Similarity=0.211  Sum_probs=199.5

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC--------CCCEEEEcCCCCCcccccccccccccccc
Q 010008          139 ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--------PHDRIMGLDLPHGGHLSHGFMTPKRRVSG  210 (520)
Q Consensus       139 ~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~--------pGD~Vl~~~~~~~ghls~g~~~~~~~v~~  210 (520)
                      +++...+.++++++|.+.    +.+++.+|+.|+.+.++++-.        ..++|++++-.||....        ....
T Consensus       530 q~i~elq~~l~eltGmd~----~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPa--------sa~~  597 (939)
T TIGR00461       530 ELIAQLEKWLCSITGFDA----ISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPA--------SAAM  597 (939)
T ss_pred             HHHHHHHHHHHHHHCCCC----cccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHH--------HHHH
Confidence            344455689999999995    578999999888876666521        23578888876654421        1233


Q ss_pred             ccceEEEEEcccCCCCCCCCHHHHHHHhhh--cCCcEEEEcCCCCCC-CCC-HHHHHHHHHHhCCEEEEechhhcccccc
Q 010008          211 TSIYFESMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIAGASAYPR-DFD-YPRMRQIADAVGALLMMDMAHISGLVAA  286 (520)
Q Consensus       211 ~g~~~~~v~~~~d~~~~~iD~d~le~~i~~--~~pklIi~~~s~~p~-~~d-~~~i~~ia~~~g~~li~D~Ah~~gli~~  286 (520)
                      .|.  +++.++.| ++|.+|+++|++++++  .++++|++.++++.+ ..| +++|+++|+++|+++++|+|+..++...
T Consensus       598 ~G~--~Vv~V~~d-~~G~iDle~L~~~i~~~~~~taaV~iT~pst~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l  674 (939)
T TIGR00461       598 AGM--QVVPVNCD-QDGNIDLVDLKNKAEQHGDELAAVMVTYPSTHGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGL  674 (939)
T ss_pred             CCC--EEEEeccC-CCCCcCHHHHHHHHhhcCCceEEEEEEeCCcCceecccHHHHHHHHHHcCCEEEEEecChhhCCCC
Confidence            454  66677776 5799999999999985  378889888766655 444 9999999999999999999987654422


Q ss_pred             cccCCCCC-cccEEEeccCcccC-----CCCc-eEEEeeCCCcchhhHHHhhccc------------C-CCCCCCCChHH
Q 010008          287 SVVADPFK-YCDVVTTTTHKSLR-----GPRG-GMIFFKKDPVLGVELESAINNA------------V-FPGLQGGPHNH  346 (520)
Q Consensus       287 ~~~~~p~~-~aDiv~~S~hK~l~-----Gprg-G~I~~~~~~~~~~~l~~~i~~~------------~-~p~~~g~p~~~  346 (520)
                         ..|-. ++|++++|.||+|.     |+.| |++.+++.      +...+-..            . .......+..+
T Consensus       675 ---~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~------L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~  745 (939)
T TIGR00461       675 ---TSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSH------LIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGS  745 (939)
T ss_pred             ---CCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhh------chhhcCCCcccccccCCCCccccccccccccCc
Confidence               23323 79999999999986     4444 88988873      22111100            0 00000001111


Q ss_pred             -HHH-HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCC---CCeeEEEEecC----CCCCHHHHHHHHh
Q 010008          347 -TIG-GLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS---DNHLVLVDLRP----MGIDGARVEKILD  417 (520)
Q Consensus       347 -~ia-ala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt---~~~~~~vd~~~----~g~~~~~~~~~L~  417 (520)
                       .++ ..++.++.+...++++..++...|+.++++.|.+ +++++..+.   .-|-+++++++    .|++..++.+.|.
T Consensus       746 a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~-~~~~l~~~~~~~~~hEfv~~~~~~~~~~g~~~~dIakrL~  824 (939)
T TIGR00461       746 ASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD-HYPILFVGTLKHVAHECILDLRPLKAKTGIEAIDVAKRLQ  824 (939)
T ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc-cCcccccCCCCceeEEEEEeccchhhhcCCCHHHHHHHHH
Confidence             111 1223456555567888899999999999999987 777766432   23446777764    2466788999999


Q ss_pred             hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHHHHH
Q 010008          418 MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEA  474 (520)
Q Consensus       418 ~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~~~~  474 (520)
                      +.|+..-..+.|      ..+.+=|.....    .+.+|++++++++..+-....++
T Consensus       825 d~G~hapt~~~p------v~g~lmiepTE~----eskeelD~f~~al~~I~~e~~~~  871 (939)
T TIGR00461       825 DYGFHAPTLSFP------VPGTLMVEPTES----ESLEELDRFCDAMIAIKEEINAL  871 (939)
T ss_pred             hCCeeccccCCc------cCCeEEEEeecc----CCHHHHHHHHHHHHHHHHHHHHh
Confidence            999986432222      223333322222    45899999999998877666544

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.81  E-value=5.2e-18  Score=176.87  Aligned_cols=287  Identities=20%  Similarity=0.216  Sum_probs=181.5

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +++..+.+|    +.+++++|.+.     .+...+|++|+.+++.++++|||+|+++++.|++.+....    ......+
T Consensus        49 ~~p~~~~le----~~lA~l~g~~~-----v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~----~~~~~~~  115 (382)
T TIGR02080        49 GNPTRDLLQ----QALAELEGGAG-----AVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLN----ALAKKGC  115 (382)
T ss_pred             CCchHHHHH----HHHHHHhCCCc-----EEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHH----HHHhhcC
Confidence            455667777    67888888542     2334556699999999999999999999998876532110    0011112


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                        .++..+  +    ..|.+++++++++ ++|+|+++.|+||+  ..|+++|.++|+++|+++++|++|..+..     .
T Consensus       116 --~~v~~~--d----~~d~~~l~~ai~~-~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~-----~  181 (382)
T TIGR02080       116 --FRVLFV--D----QGDEQALRAALAQ-KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPAL-----Q  181 (382)
T ss_pred             --eEEEEE--C----CCCHHHHHHhcCc-CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence              233332  2    2488999999987 89999999999987  78999999999999999999999866543     2


Q ss_pred             CCCC-cccEEEeccCcccCCC---CceEEEeeCCCcchhhHHHhhcccC-CCCCCCCChHHHHHHHHHHHHHhcCchhHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINNAV-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKV  365 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gp---rgG~I~~~~~~~~~~~l~~~i~~~~-~p~~~g~p~~~~iaala~al~~~~~~~~~~  365 (520)
                      .|+. ++|++++|+||++.|+   ++|+++++++     ++.+++.... ..+...+|.   -+.+  +++.+  .-+..
T Consensus       182 ~pl~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~-----~~~~~l~~~~~~~g~~~sp~---~a~l--~lr~l--~tl~~  249 (382)
T TIGR02080       182 NPLALGADLVLHSCTKYLNGHSDVIAGAVIAKDP-----QVAEELAWWANNLGVTGGAF---DSYL--TLRGL--RTLVA  249 (382)
T ss_pred             CchhhCCCEEEeecceeccCCCCceeEEEEeCCH-----HHHHHHHHHHHccCCCCCHH---HHHH--HHccc--chHHH
Confidence            3444 7899999999999775   4699888664     5655554321 112222222   1221  23332  23455


Q ss_pred             HHHHHHHHHHHHHHHHHHC-CCE-EecCCC---------------CCeeEEEEecCCCCCHHHHHHHHhh---cCeEEcC
Q 010008          366 YQNKVVSNCRALASRLVEL-GYK-LVSGGS---------------DNHLVLVDLRPMGIDGARVEKILDM---ASITLNK  425 (520)
Q Consensus       366 ~~~~i~~na~~l~~~L~~~-G~~-v~~~gt---------------~~~~~~vd~~~~g~~~~~~~~~L~~---~gI~v~~  425 (520)
                      ++++..+|+..+++.|++. .++ |..++-               .+.++.+++.  + +.+.+.++++.   ..+.++.
T Consensus       250 R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~--~-~~~~~~~f~~~l~~~~~~~s~  326 (382)
T TIGR02080       250 RMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELK--G-GEQTVRRFLGGLSLFTLAESL  326 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEec--C-cHHHHHHHHHcCCcceEeccC
Confidence            6788889999999999873 333 332321               1225555664  1 22334444444   4444443


Q ss_pred             CC------CCCCC-----C-------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          426 NS------VPGDK-----S-------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       426 ~~------~Pg~~-----~-------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +.      .|-..     .       ...++-||++..        -||.+.+.+-|.+++.
T Consensus       327 G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvG--------lE~~~dl~~dl~~al~  380 (382)
T TIGR02080       327 GGVESLIAHPATMTHAAMGPEARAEAGISDTLLRLSVG--------LEDADDLIADLEQGLR  380 (382)
T ss_pred             CCCcceeECCCccCcccCCHHHHHhcCCCcCeEEEEec--------cCCHHHHHHHHHHHHh
Confidence            32      12110     0       012456898754        3678888887777765

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.81  E-value=8.1e-18  Score=173.03  Aligned_cols=263  Identities=18%  Similarity=0.189  Sum_probs=173.3

Q ss_pred             HHHHHHHcCCCC-CCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEccc
Q 010008          145 QKRALAAFNLDE-NKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL  222 (520)
Q Consensus       145 ~~~~~~lfg~~~-~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~  222 (520)
                      ++.+++.+|++. +    +|.+++|+ +++..+ ..+++||| |++.+|.|.++.        ..+...|.  +++.+++
T Consensus        59 ~~~ia~~~~~~~~~----~I~i~~Gs~e~i~~l-~~~~~~g~-v~v~~P~y~~y~--------~~~~~~g~--~~~~v~~  122 (339)
T PRK06959         59 AACAARYYGAPDAA----HVLPVAGSQAAIRAL-PALLPRGR-VGIAPLAYSEYA--------PAFARHGH--RVVPLDE  122 (339)
T ss_pred             HHHHHHHhCCCCcc----cEEECcCHHHHHHHH-HHhcCCCe-EEEcCCCcHHHH--------HHHHHCCC--EEEeecc
Confidence            367889999974 4    56779999 777654 45678887 788888775442        12344555  5666555


Q ss_pred             CCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHH---HHHhCCEEEEechhhcccccccccCCCC-Ccc
Q 010008          223 DESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQI---ADAVGALLMMDMAHISGLVAASVVADPF-KYC  296 (520)
Q Consensus       223 d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~i---a~~~g~~li~D~Ah~~gli~~~~~~~p~-~~a  296 (520)
                      +.       +.+    .+ +++++++++|+||+  .++.+++.++   |.++++++|+|+++. .+...... ..+ .+.
T Consensus       123 ~~-------~~~----~~-~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~-~~~~~~s~-~~~~~~~  188 (339)
T PRK06959        123 AA-------DTL----PA-ALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFA-DTLPAASL-AAHTDRP  188 (339)
T ss_pred             cc-------hhc----cc-cCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCc-cCCCcccc-hhccCCC
Confidence            41       222    22 46788888999997  6676666655   557899999999844 43321000 011 111


Q ss_pred             c-EEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchh-HHHHHHHHH
Q 010008          297 D-VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF-KVYQNKVVS  372 (520)
Q Consensus       297 D-iv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~-~~~~~~i~~  372 (520)
                      + +++.|++|.+  +|.|.||+++++      ++.+.+.+...+..  .... ..++...+|+   ..+| ++..+++.+
T Consensus       189 ~vi~l~SfSK~~gl~GlRiGy~v~~~------~li~~l~~~~~~~~--vs~~-~q~a~~~~L~---~~~~~~~~~~~~~~  256 (339)
T PRK06959        189 GLVVLRSVGKFFGLAGVRAGFVLAAP------ALLAALRDALGAWT--VSGP-ARHAVRAAFA---DAAWQAAMRERLAA  256 (339)
T ss_pred             CEEEEecChhhcCCcchheEEEecCH------HHHHHHHHhcCCCC--CcHH-HHHHHHHHhC---cHHHHHHHHHHHHH
Confidence            2 7889999976  789999999987      77777766543322  1122 2223333443   2334 666788888


Q ss_pred             HHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCC
Q 010008          373 NCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGF  452 (520)
Q Consensus       373 na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~  452 (520)
                      +++.+.+.|.+.|+++..   ...++|+++.    +..++.+.|.+.||.|...   +     .++++||+..      -
T Consensus       257 ~r~~l~~~L~~~g~~~~~---~~~f~~~~~~----~~~~l~~~l~~~GI~vr~~---~-----~~~~lRisi~------~  315 (339)
T PRK06959        257 DGARLAALLRAHGFAVHA---TPLFSWTDDP----RAAALHAALARRGIWTRYF---A-----PPPSVRFGLP------A  315 (339)
T ss_pred             HHHHHHHHHHHCCCCccC---cceEEEEeCC----CHHHHHHHHHhCCeEEEEC---C-----CCCeEEEECC------C
Confidence            999999999998887653   2355676653    4567888899999999631   1     2458999853      2


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q 010008          453 SEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       453 ~~~d~~~la~~i~~~l~~  470 (520)
                      +.+|++++.+.++++++.
T Consensus       316 ~~~e~~~l~~al~~~~~~  333 (339)
T PRK06959        316 DEAEWQRLEDALAECVPT  333 (339)
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            357999999999887764

>PRK08354 putative aminotransferase; Provisional

Probab=99.81  E-value=1.6e-17  Score=168.75  Aligned_cols=291  Identities=16%  Similarity=0.101  Sum_probs=174.1

Q ss_pred             ccceEecCCCC-ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HH
Q 010008           94 KSLELIASENF-TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PA  171 (520)
Q Consensus        94 ~~i~Liasen~-~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A  171 (520)
                      +.|+|..++|+ .|+.+.+++...+..  ..+||.         ...++    +.+++++|.       +|.+++|+ +|
T Consensus         9 ~~i~l~~~~np~~p~~~~~a~~~~~~~--~~~yp~---------~~~l~----~~ia~~~~~-------~I~vt~G~~~a   66 (311)
T PRK08354          9 GLIDFSASVNPYPPEWLDEMFERAKEI--SGRYTY---------YEWLE----EEFSKLFGE-------PIVITAGITEA   66 (311)
T ss_pred             ceeEecCCCCCCCCHHHHHHHHHHHHH--hhcCCC---------hHHHH----HHHHHHHCC-------CEEECCCHHHH
Confidence            45888888886 467888888766542  224552         12333    567777773       46678998 88


Q ss_pred             HHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCC
Q 010008          172 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS  251 (520)
Q Consensus       172 ~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s  251 (520)
                      +..++. ++.|||+|++++|+|.++..        .+...|.  +++.+       .+|++.+++.++  ++++++++.|
T Consensus        67 l~~~~~-~~~~gd~vlv~~P~y~~~~~--------~~~~~g~--~~~~~-------~~d~~~l~~~~~--~~~~vi~~~P  126 (311)
T PRK08354         67 LYLIGI-LALRDRKVIIPRHTYGEYER--------VARFFAA--RIIKG-------PNDPEKLEELVE--RNSVVFFCNP  126 (311)
T ss_pred             HHHHHH-hhCCCCeEEEeCCCcHHHHH--------HHHHcCC--EEeec-------CCCHHHHHHhhc--CCCEEEEecC
Confidence            876664 44599999999998865531        2334454  44443       367889988875  5788888889


Q ss_pred             CCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCccc--CCCCceEEEeeCCCcch
Q 010008          252 AYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL--RGPRGGMIFFKKDPVLG  324 (520)
Q Consensus       252 ~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l--~GprgG~I~~~~~~~~~  324 (520)
                      +||+  ..+   +++|.++|+++|+++|+|+++ .++...+....  ..--+++.|++|++  +|.|.||+++..     
T Consensus       127 ~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y-~~f~~~~~~~~--~~~vi~~~S~SK~~~l~GlRiG~~v~~~-----  198 (311)
T PRK08354        127 NNPDGKFYNFKELKPLLDAVEDRNALLILDEAF-IDFVKKPESPE--GENIIKLRTFTKSYGLPGIRVGYVKGFE-----  198 (311)
T ss_pred             CCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcc-hhccccccccC--CCcEEEEeccHhhcCCccceeeeeeehH-----
Confidence            9997  444   567777888999999999994 45554332111  12237889999986  799999999833     


Q ss_pred             hhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCCeeEEEEec
Q 010008          325 VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVLVDLR  403 (520)
Q Consensus       325 ~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~~~~vd~~  403 (520)
                       +..+++.   .+...+   ..+.++.. ++..   .+++    ++.++.+.+.+..... +.....+  +..++++++.
T Consensus       199 -~~l~~~~---~~~~~~---~~~~~~~~-~~~~---~~~~----~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~  261 (311)
T PRK08354        199 -EAFRSVR---MPWSIG---STGYAFLE-FLIE---DDFE----HLRKTMPLIWREKERFEKALYVKS--DANFFIKDVG  261 (311)
T ss_pred             -HHHHHcC---CCccCC---HHHHHHHH-HHHH---hHHH----HHHHHHHHHHHHHHHHHHhcCCCC--CCcEEEEECC
Confidence             3323322   121111   12222222 2221   1222    2222222222222211 1111122  2344556543


Q ss_pred             CCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          404 PMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       404 ~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                          +..++.+.|.+.||.+..    |... ..++++||++..       .++.+++.+.++++
T Consensus       262 ----~~~~~~~~l~~~gv~v~~----g~~f-~~~~~iRi~~~~-------~~~~~~l~~al~~~  309 (311)
T PRK08354        262 ----DAEKFVEFLKRNGILVRD----CTSF-GLPGYIRFSVRD-------REENEKLIRALREW  309 (311)
T ss_pred             ----CHHHHHHHHHHCCeEEEe----cccC-CCCCeEEEEeCC-------HHHHHHHHHHHHHh
Confidence                456677788899999954    4331 125799998642       56788888888764

>PRK08637 hypothetical protein; Provisional

Probab=99.81  E-value=1.3e-17  Score=174.83  Aligned_cols=276  Identities=16%  Similarity=0.172  Sum_probs=166.6

Q ss_pred             eeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccc-ccccceEEEEEcccCCCCCCCCHHHHHHHhh
Q 010008          162 NVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRV-SGTSIYFESMPYRLDESTGLVDYDMLEKTAI  239 (520)
Q Consensus       162 ~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v-~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~  239 (520)
                      +|.+|+|+ +++..++.++++|||+|++++|.|+.+..        .+ ...|.  +++.+++..+++.+|++++++.++
T Consensus        71 ~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~--------~~~~~~g~--~vv~v~~~~~~~~~d~~~l~~~~~  140 (388)
T PRK08637         71 LPIVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNYKL--------TFNTRRGA--EIVTYPIFDEDGGFDTDALKEALQ  140 (388)
T ss_pred             eeeEccchHHHHHHHHHHhcCCCCEEEEcCCCCccHHH--------HHHHhcCC--EEEEecccCCCCcCCHHHHHHHHH
Confidence            56678888 89999999999999999999998765431        11 12454  677777632446789999998876


Q ss_pred             ---hcCCcEEEEcCCCCCC--CCC---HHHHHHHHHH-----hCCEEEEechhhcccccccccCCC-C----C-cccE--
Q 010008          240 ---LFRPKLIIAGASAYPR--DFD---YPRMRQIADA-----VGALLMMDMAHISGLVAASVVADP-F----K-YCDV--  298 (520)
Q Consensus       240 ---~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~-----~g~~li~D~Ah~~gli~~~~~~~p-~----~-~aDi--  298 (520)
                         +...+++++++|+||+  .++   +++|.++|++     ++++||+|++ |.++++.+....+ +    + ...+  
T Consensus       141 ~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~-Y~~l~~~~~~~~~~~~~~~~~~~~vi~  219 (388)
T PRK08637        141 AAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDA-YFGLFYEDSYKESLFAALANLHSNILA  219 (388)
T ss_pred             hhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEeccc-chhcccCCccchhhHHHhhcccccceE
Confidence               2134456777899997  444   5667777765     8999999998 4566554321111 1    1 1122  


Q ss_pred             -EEeccCcc--cCCCCceEEEeeCCCcchhhHHHhhccc----CCCCCCCCChHHHHHHHHHHHHHhcCchhHH----HH
Q 010008          299 -VTTTTHKS--LRGPRGGMIFFKKDPVLGVELESAINNA----VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV----YQ  367 (520)
Q Consensus       299 -v~~S~hK~--l~GprgG~I~~~~~~~~~~~l~~~i~~~----~~p~~~g~p~~~~iaala~al~~~~~~~~~~----~~  367 (520)
                       .+.|++|.  ++|.|.||++++.......++.+.+...    ......+.+.. ..+++..+|.   ...|..    ..
T Consensus       220 i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~-~q~a~~~~l~---~~~~~~~~~~~~  295 (388)
T PRK08637        220 VKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHP-SQSAVLRALN---SPEFDKEKQEKF  295 (388)
T ss_pred             EEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhcccCCCCcH-HHHHHHHHhC---CHHHHHHHHHHH
Confidence             23499996  3899999998753000000444444321    11111222233 3333333332   233422    23


Q ss_pred             HHHHHHHHHHHHHHHHC----CCEEecCCCCCeeEEEEecCCCCCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEE
Q 010008          368 NKVVSNCRALASRLVEL----GYKLVSGGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRI  442 (520)
Q Consensus       368 ~~i~~na~~l~~~L~~~----G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRi  442 (520)
                      ..+.++++.+.+.|.+.    ++.+..+ ..+.++|+++.  +++..++.+.| ++.||.+..    +     ..+++||
T Consensus       296 ~~~~~r~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~l~--~~~~~~l~~~l~~~~gv~~~~----~-----~~~~iRi  363 (388)
T PRK08637        296 QILKERYEKTKEVLYDGKYDDAWQAYPF-NSGYFMCLKLK--GVDAEELRVHLLEKYGIGTIA----L-----NETDLRI  363 (388)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcccccc-cceEEEEecCC--hHHHHHHHHHHhhhcceEEEe----c-----cCCceEE
Confidence            34555566667777654    4555443 23456676764  33455665655 678998742    1     2568999


Q ss_pred             ccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          443 GSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       443 g~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ++..     ..++++++.++.|.++++
T Consensus       364 ~~~~-----~~~~~i~~~~~~l~~~~~  385 (388)
T PRK08637        364 AFSC-----VEEEDIPELFDSIYKAIK  385 (388)
T ss_pred             Eeec-----CCHHHHHHHHHHHHHHHH
Confidence            8753     347888888888887775

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.80  E-value=8.8e-18  Score=177.40  Aligned_cols=161  Identities=19%  Similarity=0.181  Sum_probs=122.9

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +++..+.+|    +++++++|.+.     .|.++||+.|+.+++.+++++||+|++++..|+++.....    ..+...|
T Consensus        67 ~~pt~~~le----~~la~l~g~~~-----~v~fsSG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~----~~l~~~G  133 (437)
T PRK05613         67 TNPTVEALE----NRIASLEGGVH-----AVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFL----VTLNRLG  133 (437)
T ss_pred             cChHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHH----HHHHhcC
Confidence            456677777    67889999864     4677999999999999999999999999888887632110    0112234


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                        ++++.++ ++    .|++++++++++ ++|+|++..+.||.  ..|+++|+++|+++|+++++|++|..|..     .
T Consensus       134 --i~v~~vd-~~----~d~e~l~~~l~~-~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~-----~  200 (437)
T PRK05613        134 --IEVTFVE-NP----DDPESWQAAVQP-NTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAAL-----V  200 (437)
T ss_pred             --eEEEEEC-CC----CCHHHHHHhCCc-cCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCccccc-----c
Confidence              3666654 22    289999999988 89999887777764  78999999999999999999999876644     2


Q ss_pred             CCCC-cccEEEeccCcccCCCC---ceEEEeeC
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKK  319 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~  319 (520)
                      .|+. ++|++++|+||++.|+.   ||+++.+.
T Consensus       201 ~p~~~GaDivv~S~~K~l~G~gd~~gG~vv~~~  233 (437)
T PRK05613        201 RPLELGADVVVASLTKFYTGNGSGLGGVLIDGG  233 (437)
T ss_pred             ChHHhCCCEEEeeccceecCCCcceeEEEEecC
Confidence            3444 79999999999997753   47777543

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.80  E-value=1.1e-17  Score=174.27  Aligned_cols=288  Identities=14%  Similarity=0.090  Sum_probs=180.1

Q ss_pred             chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccc
Q 010008          134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  213 (520)
Q Consensus       134 ~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~  213 (520)
                      ++..+.+|    ++++++.|.+.     .+...||++|+.+++.++++|||+|+++++.|++......    ..+...|.
T Consensus        60 npt~~~Le----~~iA~le~~~~-----~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~----~~l~~~Gi  126 (394)
T PRK09028         60 TPTHFAFQ----AAIVELEGGAG-----TALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCD----KILKGFGI  126 (394)
T ss_pred             CchHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHH----Hhhhhcce
Confidence            44456677    56777777653     2445778899999999999999999999998765432110    01112333


Q ss_pred             eEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCC
Q 010008          214 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD  291 (520)
Q Consensus       214 ~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~  291 (520)
                        ++..++.      -|.+.+++++++ ++|+|++++++||+  ..|+++|+++|+++|+++++|++|..+..     ..
T Consensus       127 --~v~~v~~------~~~e~l~~~l~~-~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~-----~~  192 (394)
T PRK09028        127 --ETTYYDP------MIGEGIRELIRP-NTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPIN-----SR  192 (394)
T ss_pred             --EEEEECC------CCHHHHHHhcCc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccccc-----CC
Confidence              3333322      155789998887 89999999999997  77999999999999999999999876532     34


Q ss_pred             CCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHH
Q 010008          292 PFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ  367 (520)
Q Consensus       292 p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~  367 (520)
                      |++ ++|+++.|+|||+.|+.   +|+++.++      ++.+++.....  ..|+.....-+-  ..++.+.  -+.-++
T Consensus       193 Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~------~~~~~l~~~~~--~~G~~~~p~~a~--l~~rgl~--TL~lR~  260 (394)
T PRK09028        193 PFEMGVDISIQAATKYIVGHSDVMLGTATANE------KHWDQLREHSY--LMGQCTSPDDVY--LAMRGLR--TLGVRL  260 (394)
T ss_pred             ccccCceEEEEeCCeEecCCCCEEEEEEECCH------HHHHHHHHHHH--hcCCCCCHHHHH--HHHcccC--cHHHHH
Confidence            666 79999999999999985   47776554      45444432111  112211111111  1223322  246678


Q ss_pred             HHHHHHHHHHHHHHHHC-CC-EEecCCC---------------CCeeEEEEecCCCCCHHHHHHHHhhcC---eEEcCCC
Q 010008          368 NKVVSNCRALASRLVEL-GY-KLVSGGS---------------DNHLVLVDLRPMGIDGARVEKILDMAS---ITLNKNS  427 (520)
Q Consensus       368 ~~i~~na~~l~~~L~~~-G~-~v~~~gt---------------~~~~~~vd~~~~g~~~~~~~~~L~~~g---I~v~~~~  427 (520)
                      ++..+|+..+++.|++. .+ +|..++-               .+.++.+.+.. + +.+.+.++++...   +.++-+.
T Consensus       261 ~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~-~-~~~~~~~f~~~l~l~~~~~slG~  338 (394)
T PRK09028        261 AQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQ-G-DPKAVTALVEGMQHFKMGFSWGG  338 (394)
T ss_pred             HHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECC-C-CHHHHHHHHHhCCcceEecccCC
Confidence            89999999999999884 33 3433321               12244445531 1 2344555555543   3333321


Q ss_pred             ------CCCCCC--------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          428 ------VPGDKS--------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       428 ------~Pg~~~--------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                            .|...+        ...++-||++..        -||.+.+.+-|.+++..
T Consensus       339 ~~sLv~~p~~~~~~~~~~~~~~~~~liR~svG--------lEd~~dLi~Dl~~Al~~  387 (394)
T PRK09028        339 FESLILGVFGINKLRTATNWDFSKPLIRLHIG--------LEDVDDLIADLEAGFER  387 (394)
T ss_pred             CcceeECCCCcCccCchhhhcCCCCeEEEEeC--------cCCHHHHHHHHHHHHHH
Confidence                  121100        011245888754        36777778777777764

>PLN02509 cystathionine beta-lyase

Probab=99.80  E-value=7.2e-18  Score=178.70  Aligned_cols=215  Identities=21%  Similarity=0.212  Sum_probs=146.6

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      |++..+.+|    +++++++|.+.     .+..+||+.|+.+++ ++++|||+|+++++.|+++.....    ..+...|
T Consensus       131 gnpt~~aLE----~~lA~leg~e~-----ai~~~SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~----~~l~~~G  196 (464)
T PLN02509        131 GNPTRDALE----SLLAKLDKADR-----AFCFTSGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLS----QVVPRSG  196 (464)
T ss_pred             CCHHHHHHH----HHHHHHhCCCE-----EEEeCcHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHH----HHHHHCC
Confidence            667777777    67888888764     355688888876544 679999999999998876421100    0112234


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .  +++.++      ..|++++++++++ ++|+|++..++||+  ..|+++|+++|+++|+++++|++|..+..     .
T Consensus       197 ~--~v~~vd------~~d~e~l~~ai~~-~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~-----~  262 (464)
T PLN02509        197 V--VVKRVN------TTNLDEVAAAIGP-QTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVL-----S  262 (464)
T ss_pred             e--EEEEeC------CCCHHHHHHhCCc-CCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCcccccc-----C
Confidence            3  555543      2478999999987 89999999998886  77999999999999999999999877654     2


Q ss_pred             CCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  366 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~  366 (520)
                      .|+. ++|++++|+||++.|+.   +|+++++++     .+.+++......  .|+......|++  .++.+  ..+..+
T Consensus       263 ~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~-----~l~~~~~~~~~~--~g~~l~p~~A~l--~lr~L--~tL~~R  331 (464)
T PLN02509        263 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-----KLAKEVYFLQNS--EGSGLAPFDCWL--CLRGI--KTMALR  331 (464)
T ss_pred             ChhhcCCcEEEecCcccccCCCccceeEEEeccH-----HHHHHHHHHHHh--cCCCcCHHHHHH--HHhhh--hhHHHH
Confidence            3444 79999999999998865   588888764     343333211110  111111111221  22222  234567


Q ss_pred             HHHHHHHHHHHHHHHHH-CCC
Q 010008          367 QNKVVSNCRALASRLVE-LGY  386 (520)
Q Consensus       367 ~~~i~~na~~l~~~L~~-~G~  386 (520)
                      .++..+|++.+++.|++ ..+
T Consensus       332 ~~r~~~nA~~la~~L~~~p~V  352 (464)
T PLN02509        332 IEKQQENARKIAMYLSSHPRV  352 (464)
T ss_pred             HHHHHHHHHHHHHHHhcCCCc
Confidence            88999999999999987 344

>PRK06460 hypothetical protein; Provisional

Probab=99.80  E-value=2e-17  Score=172.36  Aligned_cols=212  Identities=17%  Similarity=0.167  Sum_probs=145.2

Q ss_pred             chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccc
Q 010008          134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  213 (520)
Q Consensus       134 ~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~  213 (520)
                      ++..+++|    +.+++++|.+.     .+..+||++|+..++.++++|||+|+++++.+++.+...    ...+...|.
T Consensus        44 ~p~~~~L~----~~lA~l~g~~~-----~v~~~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~----~~~~~~~G~  110 (376)
T PRK06460         44 NPTVLELT----KKIVELENAEM-----GVAFSSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFF----TDYLKNWGV  110 (376)
T ss_pred             CccHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHH----HHHHHhhCc
Confidence            44556666    67889999975     345589999999999999999999999887665432211    112233454


Q ss_pred             eEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCC
Q 010008          214 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD  291 (520)
Q Consensus       214 ~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~  291 (520)
                        ++..++.+      |.+.+++.+++ ++|+|++++++||+  .+|+++|.++|+++|+++++|+++..+..     ..
T Consensus       111 --~v~~~~~~------~~~~l~~~~~~-~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~-----~~  176 (376)
T PRK06460        111 --NVDASNPG------SDNIIEKAKSK-RYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPIN-----QK  176 (376)
T ss_pred             --EEEEECCC------CHHHHHHhcCC-CceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCcccc-----CC
Confidence              44444432      23445555555 89999999999987  88999999999999999999999764321     12


Q ss_pred             CCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHH
Q 010008          292 PFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ  367 (520)
Q Consensus       292 p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~  367 (520)
                      ++. ++|+++.|+||++.|++   +|+++.++      ++.+++.....+...+ ..  ...+. .+++..  ..++...
T Consensus       177 ~l~~~~divv~S~sK~l~G~~~~~~G~~~~~~------~l~~~l~~~~~~~g~~-~~--~~~a~-~~l~~~--~~l~~r~  244 (376)
T PRK06460        177 PLELGADIVVHSASKFLAGHNDVIAGLAAGYG------KLLNVIDQMRRTLGTS-LD--PHAAY-LTLRGI--KTLKIRM  244 (376)
T ss_pred             hhhcCCCEEEeecceeccCCCCceEEEEecCH------HHHHHHHHHHHhcCCC-CC--HHHHH-HHHhch--hhHHHHH
Confidence            332 68999999999998875   69998877      6666665432221111 11  12221 122221  2346778


Q ss_pred             HHHHHHHHHHHHHHHHC
Q 010008          368 NKVVSNCRALASRLVEL  384 (520)
Q Consensus       368 ~~i~~na~~l~~~L~~~  384 (520)
                      +++.+|++.+++.|++.
T Consensus       245 ~~~~~n~~~l~~~L~~~  261 (376)
T PRK06460        245 DVINRNAEQIAEFLEGH  261 (376)
T ss_pred             HHHHHHHHHHHHHHHcC
Confidence            89999999999999874

>PRK05939 hypothetical protein; Provisional

Probab=99.80  E-value=2.5e-17  Score=172.49  Aligned_cols=157  Identities=17%  Similarity=0.149  Sum_probs=122.8

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      |++.++.+|    ++++++.|.+.     .|..+||+.|+.+++.++++|||+|++.++.|++|.....     .+...|
T Consensus        45 g~p~~~~lE----~~la~leg~~~-----~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~-----~l~~~G  110 (397)
T PRK05939         45 GTPTTAALE----AKITKMEGGVG-----TVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFG-----TLRGLG  110 (397)
T ss_pred             CCHHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHH-----HHHhcC
Confidence            678888888    67889999876     3667899999999999999999999999988887643221     122345


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .  +++.+++      .|++++++++++ +||+|++..++||+  ..|+++|+++|+++|+++++|++|..+...     
T Consensus       111 ~--~v~~v~~------~d~e~l~~~l~~-~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~~~-----  176 (397)
T PRK05939        111 V--EVTMVDA------TDVQNVAAAIRP-NTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWLF-----  176 (397)
T ss_pred             C--EEEEECC------CCHHHHHHhCCC-CCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCccccccc-----
Confidence            4  5555443      389999999987 89999999888886  679999999999999999999998766431     


Q ss_pred             CCCC-cccEEEeccCcccCCCCc--eEEEe
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPRG--GMIFF  317 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gprg--G~I~~  317 (520)
                      .|.. ++|+++.|+||++.|+..  |.++.
T Consensus       177 ~~~~~gaDivv~S~sK~~~g~g~~igg~v~  206 (397)
T PRK05939        177 RPKDVGASLVINSLSKYIAGHGNALGGAVT  206 (397)
T ss_pred             CccccCCEEEEecCeecccCCCCeEEEEEe
Confidence            2333 799999999999976433  44444

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.79  E-value=3.1e-17  Score=170.99  Aligned_cols=286  Identities=14%  Similarity=0.121  Sum_probs=180.8

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +++..+.+|    +++++++|.+.     .|.++||+.|+.+++ ++++|||+|+++++.|++.+....    ..+...|
T Consensus        48 ~~p~~~~Le----~~la~l~g~~~-----al~~~SG~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~----~~~~~~g  113 (380)
T PRK06176         48 GNPTRFALE----ELIADLEGGVK-----GFAFASGLAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFD----KVLVKNG  113 (380)
T ss_pred             CChhHHHHH----HHHHHHhCCCC-----EEEECCHHHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHH----HHHHhcC
Confidence            456677887    67889999876     355699999888655 578999999999988876542111    0112233


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                        +++..++.      .|++++++++++ ++|+|++..|+||+  ..|+++|.++|+++|+++++|+++..+..     .
T Consensus       114 --i~v~~vd~------~d~e~l~~ai~~-~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~-----~  179 (380)
T PRK06176        114 --LSCTIIDT------SDLSQIKKAIKP-NTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYY-----Q  179 (380)
T ss_pred             --eEEEEcCC------CCHHHHHHhcCc-CceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCcccccc-----C
Confidence              35545432      489999999987 89999999888886  78999999999999999999999765432     2


Q ss_pred             CCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  366 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~  366 (520)
                      .|+. ++|++++|+||++.|+.   +|+++++++     ++.+++.....  ..|......-+  ...++.+  ..+..+
T Consensus       180 ~p~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~-----~~~~~~~~~~~--~~G~~~~~~~~--~l~~~gl--~tl~~R  248 (380)
T PRK06176        180 NPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNE-----ALAQEIAFFQN--AIGGVLGPQDS--WLLQRGI--KTLGLR  248 (380)
T ss_pred             CccccCCCEEEecCceeccCCccceeeEEEecHH-----HHHHHHHHHHH--HhcCCCCHHHH--HHHHhcc--CcHHHH
Confidence            3444 79999999999998875   688888763     55554432111  11110000111  1111111  234566


Q ss_pred             HHHHHHHHHHHHHHHHHC-CCE-EecCCC---------------CCeeEEEEecCCCCCHHHHHHHHhhcCe---EEcCC
Q 010008          367 QNKVVSNCRALASRLVEL-GYK-LVSGGS---------------DNHLVLVDLRPMGIDGARVEKILDMASI---TLNKN  426 (520)
Q Consensus       367 ~~~i~~na~~l~~~L~~~-G~~-v~~~gt---------------~~~~~~vd~~~~g~~~~~~~~~L~~~gI---~v~~~  426 (520)
                      .++..+|+..+++.|++. .+. +..++-               ...++.+++.    +.+.+.++++...+   .++.+
T Consensus       249 ~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~----~~~~~~~f~~~l~~~~~~~s~G  324 (380)
T PRK06176        249 MEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLK----NDSEAVAFVESLKLFILGESLG  324 (380)
T ss_pred             HHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC----CHHHHHHHHHcCCcceEccCCC
Confidence            788889999999999873 342 222210               1224455553    23455566655444   33332


Q ss_pred             C------CCCCCC------------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          427 S------VPGDKS------------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       427 ~------~Pg~~~------------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      .      .|...+            ...++-||++..        -||.+.+.+-|.++++
T Consensus       325 ~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG--------lE~~~dli~dl~~Al~  377 (380)
T PRK06176        325 GVESLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVG--------IEHEQDLLEDLEQAFA  377 (380)
T ss_pred             CCCceeeCCcccccccCCHHHHHhcCCCcCeEEEEec--------cCCHHHHHHHHHHHHh
Confidence            1      132110            011345888754        3678888877777775

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.79  E-value=1.2e-17  Score=174.05  Aligned_cols=215  Identities=19%  Similarity=0.175  Sum_probs=148.3

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +++..+.+|    +.+++++|.+.     .+.+.||+.|+.+++ ++++|||+|+++++.|++.+....    ..+...|
T Consensus        48 ~~p~~~~Le----~~lA~l~g~~~-----~~~~~sG~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~----~~~~~~G  113 (377)
T PRK07671         48 GNPTRAALE----ELIAVLEGGHA-----GFAFGSGMAAITAVM-MLFSSGDHVILTDDVYGGTYRVMT----KVLNRFG  113 (377)
T ss_pred             CChHHHHHH----HHHHHHhCCCc-----eEEeCCHHHHHHHHH-HHhCCCCEEEECCCccchHHHHHH----HHHhcCC
Confidence            456677777    67889999875     355689998877654 678999999999998875432110    0112234


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .  +++.++.      .|++++++++++ ++|+|++++|+||+  ..|+++|+++|+++|+++++|+++..+..     .
T Consensus       114 ~--~v~~v~~------~d~~~l~~ai~~-~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~-----~  179 (377)
T PRK07671        114 I--EHTFVDT------SNLEEVEEAIRP-NTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYW-----Q  179 (377)
T ss_pred             e--EEEEECC------CCHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCcccc-----C
Confidence            3  5555432      489999999987 89999999999986  78999999999999999999999654322     2


Q ss_pred             CCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  366 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~  366 (520)
                      .|+. ++|++++|++|++.|+.   +|+++++++     ++.+++......  .|+......+.  .+++.+  ..+..+
T Consensus       180 ~p~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~-----~l~~~~~~~~~~--~g~~~~~~~a~--l~~~~l--~tl~~R  248 (377)
T PRK07671        180 SPISLGADIVLHSATKYLGGHSDVVAGLVVVNSP-----ELAEDLHFVQNS--TGGILGPQDSW--LLLRGL--KTLGIR  248 (377)
T ss_pred             ChhhhCCeEEEecCcccccCCccceeEEEEeCcH-----HHHHHHHHHHHh--hcCCCCHHHHH--HHHcCc--ChHHHH
Confidence            3444 78999999999999885   588887664     565555432111  12111111111  122322  224557


Q ss_pred             HHHHHHHHHHHHHHHHH-CCC
Q 010008          367 QNKVVSNCRALASRLVE-LGY  386 (520)
Q Consensus       367 ~~~i~~na~~l~~~L~~-~G~  386 (520)
                      .++..+|++.+++.|++ .++
T Consensus       249 ~~~~~~na~~la~~L~~~~~v  269 (377)
T PRK07671        249 MEEHETNSRAIAEFLNNHPAV  269 (377)
T ss_pred             HHHHHHHHHHHHHHHHcCCCe
Confidence            78888999999999987 344

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.79  E-value=1.4e-17  Score=174.96  Aligned_cols=159  Identities=16%  Similarity=0.193  Sum_probs=123.6

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      |++.++.+|    +.++++.|..+     -|.+.||+.|+.+++.++++|||+|+++.+.|++.....    ...+...|
T Consensus        59 ~nPtv~~lE----~~la~leg~~~-----av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~----~~~l~~~G  125 (432)
T PRK06702         59 GNPTLAAFE----QKLAELEGGVG-----AVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLF----GVSLRKLG  125 (432)
T ss_pred             CCcHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHH----HHHHHHCC
Confidence            457788888    67888999876     255689999999999999999999999999887653210    00123345


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .  ++.+++     ..+|++++++++++ +||+|++..++||+  ..|+++|+++|+++|+++++|++....     ...
T Consensus       126 i--~v~~vd-----~~~d~~~l~~~I~~-~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP-----~~~  192 (432)
T PRK06702        126 I--DVTFFN-----PNLTADEIVALAND-KTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATP-----YLC  192 (432)
T ss_pred             C--EEEEEC-----CCCCHHHHHHhCCc-CCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCch-----hhC
Confidence            4  555543     34799999999998 99999999899987  789999999999999999999985322     223


Q ss_pred             CCCC-cccEEEeccCcccCCCCc---eEEEe
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPRG---GMIFF  317 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gprg---G~I~~  317 (520)
                      .|+. ++||++.|++|++.|.-.   |.++.
T Consensus       193 ~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~  223 (432)
T PRK06702        193 QAFEHGANIIVHSTTKYIDGHASSLGGIVID  223 (432)
T ss_pred             ChhhcCCCEEEEccccccCCCcceeceEEEe
Confidence            5665 799999999999987654   66653

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.79  E-value=1.5e-17  Score=172.81  Aligned_cols=284  Identities=15%  Similarity=0.131  Sum_probs=180.7

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +++.++++|    ++++++.|.+.     .|.+.||+.|+.+++.++++|||+|++++..|++.+...    ...+...|
T Consensus        62 ~~P~~~~lE----~~la~leg~~~-----av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~----~~~~~~~G  128 (384)
T PRK06434         62 GNPTVQAFE----EKYAVLENAEH-----ALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFF----NKVLKTLG  128 (384)
T ss_pred             CChhHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHH----HHHHHhcC
Confidence            678889999    67889999876     366799999999999999999999999887777664321    01222334


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .  +++.+++++. ..++       +.+.++|+|++..++||+  ..|+++|+++|+++|  +++|+++.++.     ..
T Consensus       129 i--~v~fvd~~~~-~~~~-------l~~~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~~-----~~  191 (384)
T PRK06434        129 I--HVDYIDTDRL-NSLD-------FDPSNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASPY-----NQ  191 (384)
T ss_pred             c--EEEEECCCCh-hhee-------ecCCCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCcc-----cC
Confidence            4  6667666531 1122       222368999999888876  789999999999998  56799975432     23


Q ss_pred             CCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  366 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~  366 (520)
                      .|+. ++|++++|.||++.|+.   ||+|+++++     ++.+++.....  ..|......-|++  .+..+  ..+..+
T Consensus       192 ~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~-----~~~~~~~~~~~--~~G~~~~~~~A~l--~~~gL--~tL~~R  260 (384)
T PRK06434        192 NPLDLGADVVIHSATKYISGHSDVVMGVAGTNNK-----SIFNNLVERRK--TLGSNPDPIQAYL--ALRGL--KTLGLR  260 (384)
T ss_pred             CchhcCCCEEEeecccccCCCCCceEEEEecCcH-----HHHHHHHHHHH--hcCCCCCHHHHHH--HHhCC--CcHHHH
Confidence            4555 79999999999998865   688888764     56555542210  1122111222222  23333  345778


Q ss_pred             HHHHHHHHHHHHHHHHHC-CC-EEecCCC---------CCeeEEEEecCCCCCHHHHHHHHhhcC---eEEcCCC-----
Q 010008          367 QNKVVSNCRALASRLVEL-GY-KLVSGGS---------DNHLVLVDLRPMGIDGARVEKILDMAS---ITLNKNS-----  427 (520)
Q Consensus       367 ~~~i~~na~~l~~~L~~~-G~-~v~~~gt---------~~~~~~vd~~~~g~~~~~~~~~L~~~g---I~v~~~~-----  427 (520)
                      .++..+|+..+++.|++. .+ +|..++-         ...++.+++.  +  .+.+.++++...   +.++.+.     
T Consensus       261 ~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~--~--~~~~~~f~~~l~l~~~~~slG~~~sl~  336 (384)
T PRK06434        261 MEKHNKNGMELARFLRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELR--S--MEDVHKFIRNLEIPMVAASLGGVESLI  336 (384)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccEEECCChHHHHHhcCCCCceEEEEEC--C--HHHHHHHHHhCCcceEccCCCCCCeee
Confidence            899999999999999873 33 3333321         2335555653  2  344555555544   3333321     


Q ss_pred             -CCCCCC------------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          428 -VPGDKS------------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       428 -~Pg~~~------------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                       .|...+            ...++-|||+..        -||.+.+.+-|.+++.
T Consensus       337 ~~p~~~~h~~~~~e~~~~~gi~~~liRlsvG--------lEd~~dLi~dl~~Al~  383 (384)
T PRK06434        337 TLPVETSHSSLSPEERERLGISDNLVRFSIG--------IEDIDDLIKDIENALS  383 (384)
T ss_pred             ECCCccccccCCHHHHHhcCCCcCeEEEEeC--------cCCHHHHHHHHHHHhc
Confidence             122110            011345888754        3677777777766653

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.79  E-value=1e-16  Score=168.64  Aligned_cols=313  Identities=14%  Similarity=0.081  Sum_probs=191.4

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC---
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---  181 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~---  181 (520)
                      -.|.|.+++...+.+ +..+.+   ++. ++...++|    +++++++|.+.     .+..+||++|+.+++..+..   
T Consensus        58 ~~~~i~~a~~~~~~~-~~~~~~---~~~-~~~~~~l~----~~l~~~~~~~~-----~~~~~SGs~A~e~al~~a~~~~~  123 (401)
T PRK00854         58 CHPKILAAMVEQAGR-LTLTSR---AFR-NDQLAPLY----EELAALTGSHK-----VLPMNSGAEAVETAIKAVRKWGY  123 (401)
T ss_pred             CCHHHHHHHHHHHhh-cccccc---ccC-CHHHHHHH----HHHHhhCCCCE-----EEEeCCcHHHHHHHHHHHHHHHH
Confidence            368888888877753 322222   111 23344454    67788888653     35568999999999987742   


Q ss_pred             ------CC-CEEEEcCCCCCccccccccccccccccccce---E-----EEEEcccCCCCCCCCHHHHHHHhhhcCCcEE
Q 010008          182 ------PH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY---F-----ESMPYRLDESTGLVDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       182 ------pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~---~-----~~v~~~~d~~~~~iD~d~le~~i~~~~pklI  246 (520)
                            +| ++|++.+-.+.|......     .+......   +     .+..++      ..|++++++.+.+ ++++|
T Consensus       124 ~~~g~~~~~~~vi~~~~~~HG~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~le~~i~~-~~~ai  191 (401)
T PRK00854        124 EVKGVPEGQAEIIVCADNFHGRTLSIV-----GFSTDPDARGGFGPFTPGFRVVP------FGDAEALEAAITP-NTVAF  191 (401)
T ss_pred             hccCCCCCCceEEEECCCcCCccHHHH-----hccCCccccccCCCCCCCeEEeC------CCCHHHHHHHhCC-CeEEE
Confidence                  34 678877755422210000     00000000   0     011111      2489999999987 89999


Q ss_pred             EEcCCCCCC--CCC----HHHHHHHHHHhCCEEEEechhhccccccccc--CCCCC-cccEEEeccCcccCC--CCceEE
Q 010008          247 IAGASAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSLRG--PRGGMI  315 (520)
Q Consensus       247 i~~~s~~p~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~--~~p~~-~aDiv~~S~hK~l~G--prgG~I  315 (520)
                      ++.++.+++  ..+    +++|+++|++||+++|+|++|. |+...+..  ..... .+|+++++  |+|.|  +++|++
T Consensus       192 i~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~-g~g~~g~~~~~~~~g~~~D~~~~~--K~l~gg~~~ig~v  268 (401)
T PRK00854        192 LVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQT-GLGRTGKLLAEEHEGIEADVTLIG--KALSGGFYPVSAV  268 (401)
T ss_pred             EEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCCCchHhHHhhcCCCCCEEEec--ccccCCccCeEEE
Confidence            999887765  444    9999999999999999999985 54333310  00111 36888765  99843  578999


Q ss_pred             EeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecC-CCC
Q 010008          316 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG-GSD  394 (520)
Q Consensus       316 ~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~-gt~  394 (520)
                      ++++      ++.+.+.........+++... .++...+|+.+...   ...+++.++.+.+.+.|++.+...+.. ...
T Consensus       269 ~~~~------~~~~~l~~~~~~~t~~~~~~~-~aa~~a~L~~l~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~  338 (401)
T PRK00854        269 LSNS------EVLGVLKPGQHGSTFGGNPLA-CAVARAALKVLTEE---GMIENAAEMGAYFLEGLRSIRSNIVREVRGR  338 (401)
T ss_pred             EEcH------HHHhcccCCCCCCCCCcCHHH-HHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHhhccCceEEEecc
Confidence            9988      566655432222233443333 33334466654332   245677777888889898765432211 112


Q ss_pred             CeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          395 NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       395 ~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ..++.+.+.....+..++.+.|.+.||.+..         ...+.||++++..    .+++|++++.+.|++++.
T Consensus       339 g~~~~i~~~~~~~~~~~~~~~L~~~GV~v~~---------~~~~~lR~~p~~~----~t~e~i~~~i~~l~~~l~  400 (401)
T PRK00854        339 GLMLAVELEPEAGGARQYCEALKERGLLAKD---------THDHTIRLAPPLV----ITREQVDWALEQIAKVLA  400 (401)
T ss_pred             ceEEEEEEecCchhHHHHHHHHHHCCeEEec---------CCCCEEEEeCCcc----cCHHHHHHHHHHHHHHhh
Confidence            3444455533323456777888888999842         1246899987643    458999999999988763

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.79  E-value=5.5e-17  Score=170.36  Aligned_cols=309  Identities=15%  Similarity=0.172  Sum_probs=189.3

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhC--C-CCCEEEEcCCCCCcccccccccccccccccc
Q 010008          137 IDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAIL--K-PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       137 ~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all--~-pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      .-.+.+...+++++++|++..+.  -+.+.+|| .++.+++.++-  + +||+|+++..+|.+.        .+.+.+.|
T Consensus       103 ~~~l~~~~e~~~~~~~G~~~~~~--a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~--------~kAi~~~G  172 (444)
T TIGR03531       103 LYKLTNKLVKDFLKLLGLRSIKS--AFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSC--------IKAISTAG  172 (444)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCE--EEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHH--------HHHHHHcC
Confidence            34445555578999999983221  23346677 57777777763  2 699999988654322        13566777


Q ss_pred             ceEEEEEcc--cCCCCCCCCHHHHHHHhhhc--CCcEEEEcCCC-CC--CCCCHHHHHHHHHHhCCEEEEechhhccccc
Q 010008          213 IYFESMPYR--LDESTGLVDYDMLEKTAILF--RPKLIIAGASA-YP--RDFDYPRMRQIADAVGALLMMDMAHISGLVA  285 (520)
Q Consensus       213 ~~~~~v~~~--~d~~~~~iD~d~le~~i~~~--~pklIi~~~s~-~p--~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~  285 (520)
                      .  +++.++  ++++++.+|+++|++++++.  +..+++++.++ ++  ...|+++|.++|+++|+++++|+||..+...
T Consensus       173 ~--~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~  250 (444)
T TIGR03531       173 F--EPRVIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNK  250 (444)
T ss_pred             C--eEEEeeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChh
Confidence            6  666666  45567899999999999863  34555665554 33  2789999999999999999999998754322


Q ss_pred             cccc-CCCCC--cccEEEeccCcccCCCC-ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCc
Q 010008          286 ASVV-ADPFK--YCDVVTTTTHKSLRGPR-GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSP  361 (520)
Q Consensus       286 ~~~~-~~p~~--~aDiv~~S~hK~l~Gpr-gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~  361 (520)
                      .... ...+.  .+|++++|+||++..|. ||+|+++++     ++.+.+... +++...  ...... ++.++......
T Consensus       251 ~~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~-----el~~~i~~~-y~g~~~--~s~~~~-~~~~ll~~G~~  321 (444)
T TIGR03531       251 YMELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDE-----NFIQEISKS-YPGRAS--ASPSLD-VLITLLSLGSK  321 (444)
T ss_pred             hhhhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCH-----HHHHHHHHh-ccCCCC--ChHHHH-HHHHHHHhCHH
Confidence            1111 11122  37999999999997654 567778664     677766653 333221  112222 23344444456


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH----CCCEEecCCCCCeeEE-EEecCC-CCCHHHHHHHHhhcCeEEcCCCCCCCCCCC
Q 010008          362 EFKVYQNKVVSNCRALASRLVE----LGYKLVSGGSDNHLVL-VDLRPM-GIDGARVEKILDMASITLNKNSVPGDKSAL  435 (520)
Q Consensus       362 ~~~~~~~~i~~na~~l~~~L~~----~G~~v~~~gt~~~~~~-vd~~~~-g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~  435 (520)
                      +++++.++..++++++.+.|.+    .|.+++.. ..|.+.+ +.+... +-+...+-..|-..+|.-...-.||+....
T Consensus       322 g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~-~~n~is~~~~~~~~~~~~~~~~g~~l~~~~v~g~r~v~~~~~~~~  400 (444)
T TIGR03531       322 GYLELLKERKEMYKYLKELLQKLAERHGERLLDT-PENPISSAMTLSTLKGKDPTMLGSMLYSRRVTGPRVVTNGDSKTV  400 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecC-CCCceeEEEecccccccCHHHHHHHHHhCCCCCceeecCCCceEE
Confidence            7889999999999999999876    46777642 2344332 233211 223455666666555532211124442111


Q ss_pred             CCCEEE-Ecc-------CCcc---ccCCCHHHHHHHHHHHHHH
Q 010008          436 VPGGIR-IGS-------PAMT---TRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       436 ~~~giR-ig~-------~~~t---t~g~~~~d~~~la~~i~~~  467 (520)
                      +...++ +|.       |.+|   ..|++.+|++.+.+.++++
T Consensus       401 ~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~  443 (444)
T TIGR03531       401 GGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKS  443 (444)
T ss_pred             CCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence            110111 111       1222   3699999999999988765

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.78  E-value=3.8e-17  Score=172.67  Aligned_cols=157  Identities=20%  Similarity=0.231  Sum_probs=122.0

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +++.++++|    +++++++|.++     .|.+.||++|+.+++.+++++||+|++++..|++......    ..+...|
T Consensus        62 ~~p~~~~le----~~lA~l~g~~~-----av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~----~~l~~~G  128 (433)
T PRK08134         62 SNPTVAVLE----ERVAALEGGVG-----AIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLH----YTLRRFG  128 (433)
T ss_pred             cChHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHH----HHHhhCC
Confidence            456677777    67889999876     2557899999999999999999999999988876421100    0011234


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                        .+++.++++      |++++++++++ +||+|++..++||+  ..|+++|+++|+++|+++++|++|..+..     .
T Consensus       129 --i~v~~vd~~------d~~~l~~~i~~-~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~-----~  194 (433)
T PRK08134        129 --IETTFVKPG------DIDGWRAAIRP-NTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYL-----L  194 (433)
T ss_pred             --eEEEEECCC------CHHHHHHhcCC-CCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence              366665542      89999999988 89999999888885  78999999999999999999999887754     2


Q ss_pred             CCCC-cccEEEeccCcccCCCCc---eEEE
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPRG---GMIF  316 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gprg---G~I~  316 (520)
                      .|+. ++|++++|.||++.|+..   |+++
T Consensus       195 ~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~  224 (433)
T PRK08134        195 RPFEHGADLVYHSATKFLGGHGTAIGGVLV  224 (433)
T ss_pred             CchhcCCCEEEeccccccCCCCCceEEEEE
Confidence            3455 799999999999977652   5554

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.78  E-value=1.4e-17  Score=182.09  Aligned_cols=296  Identities=18%  Similarity=0.166  Sum_probs=198.5

Q ss_pred             HHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcc
Q 010008          143 LCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR  221 (520)
Q Consensus       143 ~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~  221 (520)
                      .+++.++++||++...+     +++|| .+|.++++++++|||+||+...+|-+.+ ||      .+.++|.  .++++.
T Consensus       178 eAq~~AA~~fgAd~tyF-----lvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~-hg------aLiLsGa--~PVYl~  243 (720)
T PRK13578        178 DAQKHAAKVFNADKTYF-----VLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNH-HG------ALIQAGA--TPVYLE  243 (720)
T ss_pred             HHHHHHHHHhCCCceEE-----EeCChhHHHHHHHHHhcCCCCEEEeecccHHHHH-HH------HHHHcCC--eEEEee
Confidence            35688999999997532     36787 8999999999999999999988776543 32      1334565  566543


Q ss_pred             cCC-CC---CCCCHHH-----HHHHhhhc--------CC-cEEEEcCCCCCC-CCCHHHHHHH-HHHhCCEEEEechhhc
Q 010008          222 LDE-ST---GLVDYDM-----LEKTAILF--------RP-KLIIAGASAYPR-DFDYPRMRQI-ADAVGALLMMDMAHIS  281 (520)
Q Consensus       222 ~d~-~~---~~iD~d~-----le~~i~~~--------~p-klIi~~~s~~p~-~~d~~~i~~i-a~~~g~~li~D~Ah~~  281 (520)
                      ..- ..   +.|+.+.     |++++.++        +| |++++.+|+|-+ ..|++.|.++ ++.++ +|++|+||++
T Consensus       244 P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTYdG~~ydi~~I~~~~~h~~~-~llvDEAhga  322 (720)
T PRK13578        244 TARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCD-YILFDSAWVG  322 (720)
T ss_pred             ccccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCCcceeecHHHHHHHhhccCC-cEEEeCcchh
Confidence            221 11   3456544     88888764        23 889998888866 7899999998 68888 9999999987


Q ss_pred             ccccccc----cCCCCC-ccc----EEEeccCcccCCCCc-eEEEeeCCCcch-hh--HHHhhcccCCCCCCCCChHHHH
Q 010008          282 GLVAASV----VADPFK-YCD----VVTTTTHKSLRGPRG-GMIFFKKDPVLG-VE--LESAINNAVFPGLQGGPHNHTI  348 (520)
Q Consensus       282 gli~~~~----~~~p~~-~aD----iv~~S~hK~l~Gprg-G~I~~~~~~~~~-~~--l~~~i~~~~~p~~~g~p~~~~i  348 (520)
                      .+.+...    .++.+. ++|    +++.|+||+|++... .+|..++....+ ..  -.++++.+..-....+|+...+
T Consensus       323 h~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~i~g~~~~v~~~r~~~al~m~qSTSPsY~Lm  402 (720)
T PRK13578        323 YEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYCPHKRLNNAFMLHASTSPFYPLF  402 (720)
T ss_pred             hhccCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcccccccccCCHHHHHHHHHHHcCCChHHHHH
Confidence            7655442    122233 789    999999999988655 677775521000 00  0234554433333578999999


Q ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH-HH-CCCEEecC---------------------------CC------
Q 010008          349 GGLAVCLKHAQSPEFKVYQNKVVSNCRALASRL-VE-LGYKLVSG---------------------------GS------  393 (520)
Q Consensus       349 aala~al~~~~~~~~~~~~~~i~~na~~l~~~L-~~-~G~~v~~~---------------------------gt------  393 (520)
                      |++.+|-..+.....++..++..+.+..+++.| +. .+++++.+                           +.      
T Consensus       403 ASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~w~~~p~~~whgf~  482 (720)
T PRK13578        403 AALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFSFEPGEKWHGFE  482 (720)
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccccccccCchhhhcccccccccccCccccccc
Confidence            999987766654344677778888888888888 33 46665521                           00      


Q ss_pred             ---------CCeeEEEEecCCCCC------------HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCC
Q 010008          394 ---------DNHLVLVDLRPMGID------------GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGF  452 (520)
Q Consensus       394 ---------~~~~~~vd~~~~g~~------------~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~  452 (520)
                               |..=+++.+  .|++            +..+.+.|++.||.+.+..         ...+=    .+.+.|.
T Consensus       483 ~~~~~~~~lDP~KltI~t--~G~~~~~G~~~~~Gipg~~l~~~L~e~gI~~E~~d---------~~~vL----~l~s~g~  547 (720)
T PRK13578        483 GYAEDQYFVDPCKLLLTT--PGIDAETGEYEDFGIPATILANYLRENGIVPEKCD---------LNSIL----FLLTPAE  547 (720)
T ss_pred             cccccccccCCceEEEEc--CCcCcccccccccCccHHHHHHHHHHcCCEEEecC---------CCeEE----EEeCCCC
Confidence                     111112222  2444            7889999977799997642         11222    2555678


Q ss_pred             CHHHHHHHHHHHHHHH
Q 010008          453 SEKEFVAIADFIHEGV  468 (520)
Q Consensus       453 ~~~d~~~la~~i~~~l  468 (520)
                      ++++++++.+.|.+.-
T Consensus       548 t~~~~~~Lv~aL~~f~  563 (720)
T PRK13578        548 DMAKLQQLVAMLARFE  563 (720)
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            8999999999888763

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.78  E-value=3.8e-17  Score=169.96  Aligned_cols=292  Identities=15%  Similarity=0.054  Sum_probs=183.0

Q ss_pred             CcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccc
Q 010008          132 GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT  211 (520)
Q Consensus       132 ~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~  211 (520)
                      .|++..+.+|    ++++.+.+.+.     .|.++||++|+.+++.++++|||+|+++++.|+++.....    ..+...
T Consensus        61 ~gnPt~~~Le----~~la~le~~~~-----~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~----~~l~~~  127 (395)
T PRK05967         61 RGTPTTDALC----KAIDALEGSAG-----TILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCD----TMLKRL  127 (395)
T ss_pred             CCChHHHHHH----HHHHHHhCCCC-----EEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHH----HHHHhc
Confidence            3677777777    56777777554     4667899999999999999999999999998876532110    012233


Q ss_pred             cceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhccccccccc
Q 010008          212 SIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV  289 (520)
Q Consensus       212 g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~  289 (520)
                      |.  ++..++.+      +.+.+++++++ +||+|++++|+||.  ..|+++|+++|+++|+++++|+++..++     .
T Consensus       128 Gi--~v~~vd~~------~~e~l~~al~~-~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~-----~  193 (395)
T PRK05967        128 GV--EVEYYDPE------IGAGIAKLMRP-NTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPL-----Y  193 (395)
T ss_pred             Ce--EEEEeCCC------CHHHHHHhcCc-CceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCce-----e
Confidence            54  44444321      35789999988 89999999998886  6799999999999999999999865432     2


Q ss_pred             CCCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHH
Q 010008          290 ADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV  365 (520)
Q Consensus       290 ~~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~  365 (520)
                      ..|++ |+|+++.|++|++.|..   +|++..++      ++.+++.....  ..|+... ...+ ...++.+  .-+..
T Consensus       194 ~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~------~~~~~l~~~~~--~~G~~~~-p~da-~l~~rgl--~Tl~l  261 (395)
T PRK05967        194 FRPLDFGVDISIHAATKYPSGHSDILLGTVSANE------KCWPQLLEAHG--TLGLCAG-PDDT-YQILRGL--RTMGI  261 (395)
T ss_pred             cChhHcCCCEEEEecccccCCCCCeeEEEEEcCH------HHHHHHHHHHH--HcCCCCC-HHHH-HHHHcCc--ccHHH
Confidence            35666 89999999999987744   37776655      44444432111  1232211 1111 1122322  23466


Q ss_pred             HHHHHHHHHHHHHHHHHHC-CC-EEecCCC---------------CCeeEEEEecCC-CCCHHHHHHHHhhcCe---EEc
Q 010008          366 YQNKVVSNCRALASRLVEL-GY-KLVSGGS---------------DNHLVLVDLRPM-GIDGARVEKILDMASI---TLN  424 (520)
Q Consensus       366 ~~~~i~~na~~l~~~L~~~-G~-~v~~~gt---------------~~~~~~vd~~~~-g~~~~~~~~~L~~~gI---~v~  424 (520)
                      ++++..+|+..+++.|++. .+ +|..++-               .+.++.+++... ..+.+.+.++++...+   .++
T Consensus       262 R~~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~~~f~~~l~l~~~~~s  341 (395)
T PRK05967        262 RLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAKAHAFLDALEIFGLGYS  341 (395)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCCcccHHHHHHHHHhCCcceEccC
Confidence            7888999999999999883 44 3433321               122445555311 0123445555555443   333


Q ss_pred             CCCC------CCCC----C--CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          425 KNSV------PGDK----S--ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       425 ~~~~------Pg~~----~--~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      .+..      +.-.    .  ....+-|||+..        -||.+.+.+-|.+++..
T Consensus       342 lG~~~sLi~~~~~~~~~~~~~~~~~~liRlSvG--------lEd~~dLi~Dl~~Al~~  391 (395)
T PRK05967        342 WGGYESLALHVKLGDRTVAKAPYAGPVIRLQIG--------LEDVPDLKADLERGFAA  391 (395)
T ss_pred             CCCcceeeeeCCCChhHhhhccCCCCeEEEEec--------cCCHHHHHHHHHHHHHh
Confidence            2210      1000    0  011245898754        36777788777777764

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.77  E-value=6.9e-17  Score=170.84  Aligned_cols=156  Identities=22%  Similarity=0.228  Sum_probs=120.1

Q ss_pred             hhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccce
Q 010008          135 EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY  214 (520)
Q Consensus       135 ~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~  214 (520)
                      +..+.+|    +.+++++|.+.     .+...||++|+.+++.++++|||+|++.++.|++......    ..+...|. 
T Consensus        63 p~~~~le----~~lA~l~g~~~-----al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~----~~~~~~G~-  128 (427)
T PRK05994         63 PTNAVLE----ERVAALEGGTA-----ALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFG----HAFKSFGW-  128 (427)
T ss_pred             ccHHHHH----HHHHHHhCCCc-----EEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHH----HHHHhcCc-
Confidence            4456676    67889999876     3556899999999999999999999999988876532110    01122343 


Q ss_pred             EEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCC
Q 010008          215 FESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADP  292 (520)
Q Consensus       215 ~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p  292 (520)
                       +++.++.      .|++++++++++ ++|+|++..++||+  ..|+++|.++|+++|+++++|++|..+..     ..|
T Consensus       129 -~v~~vd~------~d~~~l~~ai~~-~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~-----~~p  195 (427)
T PRK05994        129 -QVRWADA------DDPASFERAITP-RTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYL-----IRP  195 (427)
T ss_pred             -EEEEECC------CCHHHHHHhcCc-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCcccccc-----CCc
Confidence             5555442      388999999987 89999999888886  78999999999999999999999876543     245


Q ss_pred             CC-cccEEEeccCcccCCCCc---eEEEe
Q 010008          293 FK-YCDVVTTTTHKSLRGPRG---GMIFF  317 (520)
Q Consensus       293 ~~-~aDiv~~S~hK~l~Gprg---G~I~~  317 (520)
                      +. ++|+++.|+||++.|+.+   |+++.
T Consensus       196 l~~gaDivv~S~tK~lgg~~~~~gG~v~~  224 (427)
T PRK05994        196 IEHGADIVVHSLTKFLGGHGNSMGGIIVD  224 (427)
T ss_pred             cccCCcEEEEcCccccCCCCCcEEEEEEe
Confidence            55 799999999999987653   66653

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.77  E-value=7.8e-17  Score=173.22  Aligned_cols=307  Identities=17%  Similarity=0.169  Sum_probs=189.7

Q ss_pred             chhHHHHHHHHHHHHHHHcCCCC------------CCCceeeecCChHHHHHHHHHhh----CC----------------
Q 010008          134 NEYIDELETLCQKRALAAFNLDE------------NKWGVNVQPLSGSPANFEVYTAI----LK----------------  181 (520)
Q Consensus       134 ~~~~d~lE~~a~~~~~~lfg~~~------------~~~~~~V~~~sGs~A~~~~l~al----l~----------------  181 (520)
                      .+...++|..+.+|++++++..+            ..++  +..++||+||+.++.+-    ++                
T Consensus       124 spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G--~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~  201 (522)
T TIGR03799       124 SKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLG--AFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAA  201 (522)
T ss_pred             CcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCe--EEcCchHHHHHHHHHHHHHHhccccccccccccccchhh
Confidence            34467899999999999986321            1122  33456679998876652    21                


Q ss_pred             ------CCCEEEEcCCCCCccccccccccccccccccce-EEEEEcccCCCCCCCCHHHHHHHhhh---cCCcEEEEc--
Q 010008          182 ------PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDESTGLVDYDMLEKTAIL---FRPKLIIAG--  249 (520)
Q Consensus       182 ------pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~-~~~v~~~~d~~~~~iD~d~le~~i~~---~~pklIi~~--  249 (520)
                            +++.|++.+..|.+.   .     +.....|.+ .+++.+++| +++.+|+++|++++++   .+++.+++.  
T Consensus       202 ~~~~~~~~~~v~~S~~~H~S~---~-----kaa~~lglg~~~v~~vp~d-~~g~~d~~~L~~~i~~~~~~g~~~~~vvat  272 (522)
T TIGR03799       202 LKHYGYDGLAILVSERGHYSL---G-----KAADVLGIGRDNLIAIKTD-ANNRIDVDALRDKCAELAEQNIKPLAIVGV  272 (522)
T ss_pred             hhhccCCceEEEECCCchHHH---H-----HHHHHcCCCcccEEEEEeC-CCCcCCHHHHHHHHHHHHHCCCCcEEEEEE
Confidence                  134566665544332   1     233344432 145566777 5789999999998863   144444332  


Q ss_pred             --CCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccC---CCCCcccEEEeccCcccCCCCc-eEEEeeCCCcc
Q 010008          250 --ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA---DPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVL  323 (520)
Q Consensus       250 --~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~---~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~  323 (520)
                        .+..+...|+++|+++|+++|+|+++|+||..+....+.+.   ..++.+|.+++++|||+.+|.| |+++++++   
T Consensus       273 aGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~---  349 (522)
T TIGR03799       273 AGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDP---  349 (522)
T ss_pred             ecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCH---
Confidence              22334488999999999999999999999875554333221   1123689999999999999998 99999874   


Q ss_pred             hhhHHHhhccc---C---------CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEec
Q 010008          324 GVELESAINNA---V---------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVS  390 (520)
Q Consensus       324 ~~~l~~~i~~~---~---------~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~  390 (520)
                        ++.+.+...   .         ..+++|+.....+ .+..+++.+...++++..++..+.++++.+.|.+ .+++++.
T Consensus       350 --~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al-~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~  426 (522)
T TIGR03799       350 --ALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAM-LVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVT  426 (522)
T ss_pred             --HHHHHhccCcchhcCCCCCccccceeecCcchHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEec
Confidence              332222210   0         0123455554443 4777888887788999999999999999999987 5899987


Q ss_pred             CCCCCeeEEEEecCCCCC--------------H-------HHHHHHHhhcCeEE-cCCCCCCCC-CCCCCCEEEEcc-CC
Q 010008          391 GGSDNHLVLVDLRPMGID--------------G-------ARVEKILDMASITL-NKNSVPGDK-SALVPGGIRIGS-PA  446 (520)
Q Consensus       391 ~gt~~~~~~vd~~~~g~~--------------~-------~~~~~~L~~~gI~v-~~~~~Pg~~-~~~~~~giRig~-~~  446 (520)
                      +.. -+++.+.+.+.++.              .       ..+.+.+.+.|... +...+.+.. .....-.+|+.+ ..
T Consensus       427 ~p~-l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np  505 (522)
T TIGR03799       427 EPE-LCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANP  505 (522)
T ss_pred             CCC-ccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecCC
Confidence            642 33444444343220              0       23455555666543 322121111 001124589865 22


Q ss_pred             ccccCCCHHHHHHHHH
Q 010008          447 MTTRGFSEKEFVAIAD  462 (520)
Q Consensus       447 ~tt~g~~~~d~~~la~  462 (520)
                      .|    +++|++.+.+
T Consensus       506 ~t----t~~~i~~~l~  517 (522)
T TIGR03799       506 LT----THEILQDILD  517 (522)
T ss_pred             CC----CHHHHHHHHH
Confidence            33    4788887654

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.77  E-value=6.7e-17  Score=167.84  Aligned_cols=281  Identities=18%  Similarity=0.178  Sum_probs=173.2

Q ss_pred             chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccc
Q 010008          134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  213 (520)
Q Consensus       134 ~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~  213 (520)
                      ++....+|    +.++++++  .+    .|.++||+.|+.+++.++++|||+|++.++.|++......    ..+...|.
T Consensus        50 ~p~~~~Le----~~lA~l~~--~~----~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~----~~l~~~G~  115 (366)
T PRK07582         50 NPTWRALE----AALGELEG--AE----ALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAR----EYLAPLGV  115 (366)
T ss_pred             CccHHHHH----HHHHHHcC--CC----EEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHH----HHHhcCeE
Confidence            34456676    56777772  22    4667999999999999999999999999887754321100    01112343


Q ss_pred             eEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCC
Q 010008          214 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD  291 (520)
Q Consensus       214 ~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~  291 (520)
                        +++.++.+. .    .+    .+.+ ++|+|+++.|+||+  ..|+++|.++|+++|+++++|++|....   +  ..
T Consensus       116 --~v~~v~~~~-~----~~----~~~~-~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~---~--~~  178 (366)
T PRK07582        116 --TVREAPTAG-M----AE----AALA-GADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPL---G--QR  178 (366)
T ss_pred             --EEEEECCCC-h----HH----Hhcc-CceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCcc---c--cC
Confidence              666655431 1    11    2234 78999999999987  6799999999999999999999975321   1  13


Q ss_pred             CCC-cccEEEeccCcccCCCCc---eEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHH
Q 010008          292 PFK-YCDVVTTTTHKSLRGPRG---GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ  367 (520)
Q Consensus       292 p~~-~aDiv~~S~hK~l~Gprg---G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~  367 (520)
                      |+. ++|++++|+||++.|+.|   |+++++++     ++.+++..... .....+... -+.  .++..+.  .+....
T Consensus       179 p~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~-----~l~~~l~~~~~-~~g~~~~~~-~a~--l~~r~l~--tl~~R~  247 (366)
T PRK07582        179 PLELGADLVVASDTKALTGHSDLLLGYVAGRDP-----ELMAAVERWRL-LAGAIPGPF-EAW--LAHRSLG--TLGLRF  247 (366)
T ss_pred             chhcCCcEEEecccccccCCCCeeEEEEEcCcH-----HHHHHHHHHHH-HhCCCCCHH-HHH--HHHhccc--cHHHHH
Confidence            444 689999999999988764   99988653     56555543211 111111111 111  1222222  245667


Q ss_pred             HHHHHHHHHHHHHHHH-CCCE-EecCCC---------------CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCC
Q 010008          368 NKVVSNCRALASRLVE-LGYK-LVSGGS---------------DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG  430 (520)
Q Consensus       368 ~~i~~na~~l~~~L~~-~G~~-v~~~gt---------------~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg  430 (520)
                      ++..+|+..+++.|++ ..+. +..++-               .+.++.+++.    +.+.+.++|+..+|.....++ |
T Consensus       248 ~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~----~~~~~~~~~~~l~~~~~~~s~-G  322 (366)
T PRK07582        248 ARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA----DAAAAERFVAASRLVVAATSF-G  322 (366)
T ss_pred             HHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC----CHHHHHHHHHhCCcceecccC-C
Confidence            8888999999999988 3443 332221               1234455553    457788888888876532211 1


Q ss_pred             CC-C----------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          431 DK-S----------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       431 ~~-~----------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +. +          ...++-||++...        |+.+.+.+-+.+++.
T Consensus       323 ~~~sl~~~~~~~~~~~~~~liR~svGl--------E~~~dli~dl~~al~  364 (366)
T PRK07582        323 GVHTSADRRARWGDAVPEGFVRLSCGI--------EDTDDLVADLERALD  364 (366)
T ss_pred             CccchhhhHHHcCCCCCCCeEEEEecc--------CCHHHHHHHHHHHHh
Confidence            10 0          1224579998763        445555555555543

>PLN02880 tyrosine decarboxylase

Probab=99.77  E-value=1e-16  Score=171.92  Aligned_cols=313  Identities=14%  Similarity=0.106  Sum_probs=191.4

Q ss_pred             hhHHHHHHHHHHHHHHHcCCCCCCC----ceeeecCChHHHHHHHHHhhCC-----C-----CC-EEEEcCCCCCccccc
Q 010008          135 EYIDELETLCQKRALAAFNLDENKW----GVNVQPLSGSPANFEVYTAILK-----P-----HD-RIMGLDLPHGGHLSH  199 (520)
Q Consensus       135 ~~~d~lE~~a~~~~~~lfg~~~~~~----~~~V~~~sGs~A~~~~l~all~-----p-----GD-~Vl~~~~~~~ghls~  199 (520)
                      +...++|..+.+|+++++|.+.+.+    +.-+..++||+||+.++.+.-+     .     .. .|++.+-   +|++.
T Consensus       118 p~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~---aH~Sv  194 (490)
T PLN02880        118 PAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQ---THSAL  194 (490)
T ss_pred             cccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCC---chHHH
Confidence            3467899999999999999986421    1123345567999877654311     1     12 2333332   24332


Q ss_pred             cccccccccccccceE-EEEEcccCC-CCCCCCHHHHHHHhhhc-----CCcEEEEcC--CCCCCCCCHHHHHHHHHHhC
Q 010008          200 GFMTPKRRVSGTSIYF-ESMPYRLDE-STGLVDYDMLEKTAILF-----RPKLIIAGA--SAYPRDFDYPRMRQIADAVG  270 (520)
Q Consensus       200 g~~~~~~~v~~~g~~~-~~v~~~~d~-~~~~iD~d~le~~i~~~-----~pklIi~~~--s~~p~~~d~~~i~~ia~~~g  270 (520)
                      -     +...+.|.+. .++.+++|. +++.+|+++|++++.+.     .|-+|+.+.  ++.+...|+++|+++|+++|
T Consensus       195 ~-----Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~  269 (490)
T PLN02880        195 Q-----KACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNG  269 (490)
T ss_pred             H-----HHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcC
Confidence            2     3556666542 234455653 35789999999998642     255666553  33344889999999999999


Q ss_pred             CEEEEechhhcccccccccC---CCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhh-------cccC----
Q 010008          271 ALLMMDMAHISGLVAASVVA---DPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI-------NNAV----  335 (520)
Q Consensus       271 ~~li~D~Ah~~gli~~~~~~---~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i-------~~~~----  335 (520)
                      +|+++|+||..+......+.   ..+..+|.++.++|||+..|.+ |++++++..    .+.+.+       ....    
T Consensus       270 iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~----~l~~~~~~~~~Yl~~~~~~~~  345 (490)
T PLN02880        270 MWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRN----ALIQSLSTNPEFLKNKASQAN  345 (490)
T ss_pred             CEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHH----HHHHHHccCHHHhcCcccccc
Confidence            99999999876644332211   1234689999999999999998 888888631    111111       1000    


Q ss_pred             --C--C--CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecCCCCCeeEEEEecCCCCC
Q 010008          336 --F--P--GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLVLVDLRPMGID  408 (520)
Q Consensus       336 --~--p--~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~gt~~~~~~vd~~~~g~~  408 (520)
                        +  .  ..+.+-.... ..+..+|+.....++.++.++..+.++++.+.|.+ .+++++.+. +..++.+.+.+.+.+
T Consensus       346 ~~~~~~~~~i~~~rr~~a-lklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~-~~~iv~Fr~~~~~~~  423 (490)
T PLN02880        346 SVVDYKDWQIPLGRRFRS-LKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPR-IFSLVCFRLVPPKNN  423 (490)
T ss_pred             CCCChhccCcCCCCcccH-HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-ceEEEEEEEeCCCCC
Confidence              0  0  0111111111 23444566655567788888888999999999977 589998763 234455555443322


Q ss_pred             H-------HHHHHHHh-hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          409 G-------ARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       409 ~-------~~~~~~L~-~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      .       ..+.+.|. +..+.+....+.      +..++|++.....   .+++|++.+.+.|.++...
T Consensus       424 ~~~~~~~n~~l~~~l~~~g~~~v~~t~~~------g~~~lR~~~~n~~---tt~~di~~~~~~i~~~~~~  484 (490)
T PLN02880        424 EDNGNKLNHDLLDAVNSSGKIFISHTVLS------GKYVLRFAVGAPL---TEERHVTAAWKVLQDEASK  484 (490)
T ss_pred             hhhHHHHHHHHHHHHHhCCCEEEEEEEEC------CEEEEEEEecCCC---CCHHHHHHHHHHHHHHHHH
Confidence            1       12333443 345555433222      2458999765333   4589999999999887543

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.77  E-value=2.3e-16  Score=164.52  Aligned_cols=321  Identities=17%  Similarity=0.151  Sum_probs=192.5

Q ss_pred             cceEecC--CC---CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH
Q 010008           95 SLELIAS--EN---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS  169 (520)
Q Consensus        95 ~i~Lias--en---~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs  169 (520)
                      .|++..+  .|   +.+|.|.+++...+.+.-   ....+ |. .+...++|    +++++++|.+.     -+...||+
T Consensus        29 ~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~-~~-~~~~~~l~----~~la~~~g~~~-----~~~~~sg~   94 (379)
T TIGR00707        29 YLDFVAGIAVNSLGHAHPKLVEALKEQLEKLV---HVSNL-YY-TEPQEELA----EKLVEHSGADR-----VFFCNSGA   94 (379)
T ss_pred             EEEcCcchhhccCCCCCHHHHHHHHHHHhhcc---ccccc-cC-CHHHHHHH----HHHHhhCCCCE-----EEEeCCcH
Confidence            4555542  33   345888888887765321   11112 22 23344444    78889999863     24456788


Q ss_pred             HHHHHHHHhh---CC----CCCEEEEcCCCCCccccccccccccccccccce-EEEEEcccCCCC-C--CCCHHHHHHHh
Q 010008          170 PANFEVYTAI---LK----PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDEST-G--LVDYDMLEKTA  238 (520)
Q Consensus       170 ~A~~~~l~al---l~----pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~-~~~v~~~~d~~~-~--~iD~d~le~~i  238 (520)
                      +|+.+++.++   ..    +||+|+++++.|.|+......       ..+.. +.....++..+. .  ..|++++++.+
T Consensus        95 ~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~  167 (379)
T TIGR00707        95 EANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALS-------ATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAI  167 (379)
T ss_pred             HHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHH-------hcCChhhhccCCCCCCCceeeCCCCHHHHHHHh
Confidence            9999888755   22    479999999876444221110       01100 000111121111 1  12899999998


Q ss_pred             hhcCCcEEEEcCCCCCC-C--C---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCC---C-cccEEEeccCccc-
Q 010008          239 ILFRPKLIIAGASAYPR-D--F---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YCDVVTTTTHKSL-  307 (520)
Q Consensus       239 ~~~~pklIi~~~s~~p~-~--~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~---~-~aDiv~~S~hK~l-  307 (520)
                      ++ ++++|+++.+++++ .  .   ++++|.++|+++|+++++|++|. ++...+. ..++   . ..|++  +++|++ 
T Consensus       168 ~~-~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~-~~~~~g~-~~~~~~~~~~~d~~--t~sK~~~  242 (379)
T TIGR00707       168 DD-ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQT-GIGRTGK-FFAYEHYGIEPDII--TLAKGLG  242 (379)
T ss_pred             hh-CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccch-hhhHHhcCCCCCEE--EEccccc
Confidence            87 89999997555443 2  2   37899999999999999999974 5533321 1111   1 34665  467998 


Q ss_pred             CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCE
Q 010008          308 RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYK  387 (520)
Q Consensus       308 ~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~  387 (520)
                      +|+|.|++++++      ++.+.+.........++ +...+++...+|+.+..   .++.+++.++++.+.+.|.+.+..
T Consensus       243 ~G~riG~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~aa~aaL~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~  312 (379)
T TIGR00707       243 GGVPIGATLAKE------EVAEAFTPGDHGSTFGG-NPLACAAALAVLEVIEK---ERLLENVKEKGDYFKERLEELGKN  312 (379)
T ss_pred             CCcccEEEEEcH------HHHhhhcCCCCCCCCCC-CHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHhh
Confidence            567889999987      67776654322222333 33344444456765432   245667777788888887764322


Q ss_pred             Ee-cC-CCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHH
Q 010008          388 LV-SG-GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  465 (520)
Q Consensus       388 v~-~~-gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~  465 (520)
                      .. .. .....++++.+..   +..++.+.|.+.||.+.    |+     ..+++||+.+..    .++++++++.+.|+
T Consensus       313 ~~~~~~~~~g~~~~~~~~~---~~~~~~~~l~~~Gv~v~----~~-----~~~~lRi~~~~~----~t~~~i~~~~~~l~  376 (379)
T TIGR00707       313 YPNKEVRGKGLMLGIELEA---PCKDIVKKALEKGLLVN----CA-----GPKVLRFLPPLI----ITKEEIDEAVSALE  376 (379)
T ss_pred             CCCCccccCceEEEEEecC---cHHHHHHHHHHCCcEEe----eC-----CCCEEEEECCCc----CCHHHHHHHHHHHH
Confidence            21 10 0123455666542   35678888999999994    32     246899986543    34799999999987


Q ss_pred             HH
Q 010008          466 EG  467 (520)
Q Consensus       466 ~~  467 (520)
                      ++
T Consensus       377 ~~  378 (379)
T TIGR00707       377 EA  378 (379)
T ss_pred             Hh
Confidence            65

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PLN02452 phosphoserine transaminase

Probab=99.77  E-value=3e-16  Score=162.01  Aligned_cols=334  Identities=15%  Similarity=0.141  Sum_probs=213.0

Q ss_pred             ccceEecCCCCChHHHHHHHhhhhhccCCCCC--CCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHH
Q 010008           94 KSLELIASENFTSRAVMEAVGSCLTNKYSEGL--PGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA  171 (520)
Q Consensus        94 ~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~--p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A  171 (520)
                      ..+++.+++..+|+.|++++...+.+.-..|.  .. -...+.++.+.++ .+++.++++++++. ++.+.+...+||.+
T Consensus         7 ~~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~-~sHRs~~f~~i~~-~~~~~L~~l~~~p~-~y~v~~l~Gsgt~~   83 (365)
T PLN02452          7 RVFNFSAGPATLPANVLAKAQAELYNWEGSGMSVME-MSHRGKEFLSIIQ-KAEADLRELLDIPD-NYEVLFLQGGASTQ   83 (365)
T ss_pred             ceEeeeCCCCCCCHHHHHHHHHHHhcccccCccccc-cCCCchHHHHHHH-HHHHHHHHHhCCCC-CceEEEEeCccHHH
Confidence            35789999999999999999988764322222  11 0122445555554 57789999999853 34355555777899


Q ss_pred             HHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCC
Q 010008          172 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS  251 (520)
Q Consensus       172 ~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s  251 (520)
                      +.++++.++.+||++++...   |.++..+.   +.....|........+-...+..+|+++++.  .+ +.+.|.+.+.
T Consensus        84 ~ea~~~nl~~~~~~~l~~~~---G~fg~r~~---~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~v~~~hn  154 (365)
T PLN02452         84 FAAIPLNLCKPGDKADFVVT---GSWSKKAA---KEAKKYCKTNVIASGKDEKYTKIPSVSEWEL--TP-DAKFVHICAN  154 (365)
T ss_pred             HHHHHHhcCCCCCeEEEEEC---CHHHHHHH---HHHHHhCCCcEEEecCCCCCCCCCChHHcCC--CC-CCcEEEECCC
Confidence            99999999999999998863   33332221   1112233311111111111112567776522  22 4677777654


Q ss_pred             CCCC--C-CCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhH
Q 010008          252 AYPR--D-FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL  327 (520)
Q Consensus       252 ~~p~--~-~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l  327 (520)
                      ..++  . .|++++.      ++++++|+++..|....+     +...++..+|.||.+ ||.| |+++.++      ++
T Consensus       155 ETstGv~~~~~~~i~------~~~lvVDa~Ss~g~~pid-----v~~~~v~~~saqK~l-GP~Gl~~v~vr~------~~  216 (365)
T PLN02452        155 ETIHGVEFKDYPDVG------NVPLVADMSSNFLSKPVD-----VSKYGVIYAGAQKNV-GPSGVTIVIIRK------DL  216 (365)
T ss_pred             CCCCcEecCcccccC------CCeEEEECCccccCcccC-----HHHcCEEEEeccccc-CCCCeEEEEEcH------HH
Confidence            4333  2 4565553      389999999887765332     222345557999988 7998 9999988      44


Q ss_pred             HHhhcccC---C--------CCCCCCChHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHH-CCCEEe-cC-C
Q 010008          328 ESAINNAV---F--------PGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVE-LGYKLV-SG-G  392 (520)
Q Consensus       328 ~~~i~~~~---~--------p~~~g~p~~~~iaala~al~~~~~~-~~~~~~~~i~~na~~l~~~L~~-~G~~v~-~~-g  392 (520)
                      .+++....   +        ..+.++|+.+.+.++..+|+.+.+. +++...++..+.++++.+.|.+ .|+... .. .
T Consensus       217 l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~  296 (365)
T PLN02452        217 IGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKS  296 (365)
T ss_pred             HhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChH
Confidence            43332211   0        0123799999999999999988765 6889999999999999999988 577111 11 1


Q ss_pred             CCCe-eEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          393 SDNH-LVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       393 t~~~-~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ..+. .+.+.+.... ..+.+.+.+++.|+..    ++|+.+   -+++|+|+-.    .++.++++.+++++++.-+
T Consensus       297 ~rs~~~vsF~~~~~~-~~~~f~~~~~~~g~~~----~~G~r~---~gg~R~s~yn----a~~~~~v~~L~~~m~~f~~  362 (365)
T PLN02452        297 VRSLMNVPFTLGGSE-LEAEFVKEAAKAGMVQ----LKGHRS---VGGMRASIYN----AMPLAGVEKLVAFMKDFQA  362 (365)
T ss_pred             HhCCeEEEEEcCCch-hHHHHHHHHHHCCCcc----cCCccc---cCceEEECcC----CCCHHHHHHHHHHHHHHHH
Confidence            0122 2233333222 3456788899999998    777753   3459998732    3668999999999987543

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.77  E-value=6.1e-17  Score=170.99  Aligned_cols=160  Identities=21%  Similarity=0.185  Sum_probs=120.7

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +++..+.+|    +++++++|.+.     .+...||+.|+.+++.++++|||+|++.+..|++...-..    ..+...|
T Consensus        67 ~~p~~~~Le----~~lA~l~g~~~-----av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~----~~l~~~G  133 (436)
T PRK07812         67 MNPTQDVVE----QRIAALEGGVA-----ALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFH----YTLPKLG  133 (436)
T ss_pred             CCchHHHHH----HHHHHHhCCCe-----EEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHH----HHhhcCe
Confidence            456677777    67889999886     3566899999999999999999999999877766431100    0011123


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                        ++++.++ ++    .|++++++++++ ++|+|++..++||.  ..|+++|+++|+++|+++++|++|..+..     .
T Consensus       134 --i~v~~vd-d~----~d~e~l~~ai~~-~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~-----~  200 (436)
T PRK07812        134 --IEVSFVE-DP----DDLDAWRAAVRP-NTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYL-----I  200 (436)
T ss_pred             --EEEEEEC-CC----CCHHHHHHhCCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence              3555543 21    389999999987 89999999888876  78999999999999999999999876644     3


Q ss_pred             CCCC-cccEEEeccCcccCCCCc---eEEEee
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPRG---GMIFFK  318 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gprg---G~I~~~  318 (520)
                      .|+. ++|+++.|+||+++|+.+   |.++.+
T Consensus       201 ~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~~  232 (436)
T PRK07812        201 RPLEHGADIVVHSATKYLGGHGTAIAGVIVDG  232 (436)
T ss_pred             CchhcCCCEEEEecccccCCCCCeEEEEEEcC
Confidence            4455 799999999999977653   444433

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.77  E-value=8.9e-17  Score=169.86  Aligned_cols=160  Identities=22%  Similarity=0.180  Sum_probs=121.4

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +++..+.+|    +.++++.|.+.     .+.+.||+.|+.+++.++++|||+|+++++.|++.+...    ...+...|
T Consensus        62 ~~p~~~~Le----~~lA~leg~~~-----al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~----~~~~~~~G  128 (431)
T PRK08248         62 MNPTTDVFE----KRIAALEGGIG-----ALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLF----AHTLPKLG  128 (431)
T ss_pred             CCchHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHH----HHHHHhCC
Confidence            455677777    67889999765     356789999999999999999999999998887643211    01122234


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .  +++.+++      .|++++++++++ ++++|++.+++||+  ..|+++|.++|+++|+++|+|+++..+..     .
T Consensus       129 v--~v~~vd~------~d~e~l~~ai~~-~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~-----~  194 (431)
T PRK08248        129 I--TVKFVDP------SDPENFEAAITD-KTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYL-----L  194 (431)
T ss_pred             E--EEEEECC------CCHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCcccc-----C
Confidence            3  6666543      389999999987 89999999888886  78999999999999999999999764432     2


Q ss_pred             CCCC-cccEEEeccCcccCCCC---ceEEEeeC
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKK  319 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~  319 (520)
                      .|+. ++|+++.|+||+++|+.   ||+++.+.
T Consensus       195 ~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~  227 (431)
T PRK08248        195 RPIEHGADIVVHSATKFIGGHGTSIGGVIVDSG  227 (431)
T ss_pred             ChhHcCCCEEEEcCccccCCCCCceEEEEEeCC
Confidence            3444 79999999999998775   35555443

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.77  E-value=2.9e-17  Score=170.41  Aligned_cols=288  Identities=21%  Similarity=0.244  Sum_probs=180.2

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      |++..+.+|    ++++++.|.+.     -+...||..|+.+++.+++++||+|+.++..|++......    .-....|
T Consensus        53 gnPt~~~le----~~la~Le~g~~-----a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~----~~l~~~g  119 (386)
T PF01053_consen   53 GNPTVRALE----QRLAALEGGED-----ALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLE----ELLPRFG  119 (386)
T ss_dssp             C-HHHHHHH----HHHHHHHT-SE-----EEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHH----HCHHHTT
T ss_pred             ccccHHHHH----HHHHHhhcccc-----eeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhh----hhhcccC
Confidence            678888888    67889999864     2446899999999999999999999999988876532111    1111234


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhC-CEEEEechhhccccccccc
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVG-ALLMMDMAHISGLVAASVV  289 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g-~~li~D~Ah~~gli~~~~~  289 (520)
                      .  ++..++      .-|++++++++++ ++++|++..|.||.  ..|+++|+++|+++| +++++|.+...++     .
T Consensus       120 v--~v~~~d------~~d~~~l~~~l~~-~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~-----~  185 (386)
T PF01053_consen  120 V--EVTFVD------PTDLEALEAALRP-NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPY-----N  185 (386)
T ss_dssp             S--EEEEES------TTSHHHHHHHHCT-TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTT-----T
T ss_pred             c--EEEEeC------chhHHHHHhhccc-cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeecccccee-----e
Confidence            3  554533      2488999999998 99999999999997  789999999999999 9999999855442     3


Q ss_pred             CCCCC-cccEEEeccCcccCCCC---ceEEEeeC-CCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhH
Q 010008          290 ADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKK-DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK  364 (520)
Q Consensus       290 ~~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~-~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~  364 (520)
                      ..|+. ++|+++.|.+|++.|..   +|.+++++ .     ++.+++....  ...|.... ...+. ..++.+.  -+.
T Consensus       186 ~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~-----~~~~~l~~~~--~~~G~~~~-p~da~-ll~rgl~--Tl~  254 (386)
T PF01053_consen  186 QNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSS-----ELYDRLREFR--RLLGATLS-PFDAW-LLLRGLR--TLP  254 (386)
T ss_dssp             C-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHH-----HHHHHHHHHH--HHHT-B---HHHHH-HHHHHHT--THH
T ss_pred             eccCcCCceEEEeeccccccCCcceeeEEEEECchh-----hhhhhhcchh--hhcCccch-HHHHH-HHhcCCC--cHH
Confidence            45676 79999999999998876   58888876 2     4555443211  11222111 11111 1233332  356


Q ss_pred             HHHHHHHHHHHHHHHHHHHC-CCE-EecCCC---------------CCeeEEEEecCCCCCHHHHHHHHhhcCeEE---c
Q 010008          365 VYQNKVVSNCRALASRLVEL-GYK-LVSGGS---------------DNHLVLVDLRPMGIDGARVEKILDMASITL---N  424 (520)
Q Consensus       365 ~~~~~i~~na~~l~~~L~~~-G~~-v~~~gt---------------~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v---~  424 (520)
                      .+.++..+|+..+++.|.+. .+. |..++-               .+.++.+++...   .+.+.++++...+..   +
T Consensus       255 ~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~---~~~~~~f~~~l~l~~~~~S  331 (386)
T PF01053_consen  255 LRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGG---EEAARRFLDALKLFSIAPS  331 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSH---HHHHHHHHHH-SSSEESSS
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccc---hhhhHhHHhhhhhHhhhhh
Confidence            77899999999999999884 443 333321               123556666521   135666666655542   2


Q ss_pred             CCC------CCCCCC------------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          425 KNS------VPGDKS------------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       425 ~~~------~Pg~~~------------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      .+.      .|....            ...++-||++..        -||.+.+.+-|+++++
T Consensus       332 lGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvG--------lEd~~dLi~Dl~~AL~  386 (386)
T PF01053_consen  332 LGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVG--------LEDPDDLIADLEQALE  386 (386)
T ss_dssp             -SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE----------SS-HHHHHHHHHHHHH
T ss_pred             cCCcccccccccchhhccCChhhhhccCCCCCeeEEEec--------cCCHHHHHHHHHHhcC
Confidence            111      132110            112456898854        3778888888877764

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.77  E-value=7.1e-17  Score=170.41  Aligned_cols=160  Identities=21%  Similarity=0.190  Sum_probs=120.0

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +++..+.+|    +.++++.|.+.     .+...||++|+.+++.++++|||+|++.++.|++.+....    ..+...|
T Consensus        56 ~~pt~~~Le----~~lA~l~g~~~-----~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~----~~l~~~g  122 (425)
T PRK06084         56 MNPTNDVLE----QRVAALEGGVG-----ALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLA----HTLPRIG  122 (425)
T ss_pred             CCchHHHHH----HHHHHHhCCCc-----eeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHH----Hhcccce
Confidence            345567777    67888999764     3456899999999999999999999999988775432110    0111123


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                        .++..++      ..|++++++++++ ++|+|++..++||+  ..|+++|.++|+++|++|++|++|..+..     .
T Consensus       123 --i~v~~~d------~~d~e~le~ai~~-~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~-----~  188 (425)
T PRK06084        123 --IETRFAA------HDDIAALEALIDE-RTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVL-----C  188 (425)
T ss_pred             --eEEEEEC------CCCHHHHHHHhcc-CCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence              2333332      2489999999987 89999999888886  78999999999999999999999876543     3


Q ss_pred             CCCC-cccEEEeccCcccCCCC---ceEEEeeC
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKK  319 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~  319 (520)
                      .|+. ++|++++|+||++.|+.   ||+++.+.
T Consensus       189 ~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~  221 (425)
T PRK06084        189 RPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSG  221 (425)
T ss_pred             ChhhcCCCEEEECchhcccccccceeEEEEeCC
Confidence            4455 79999999999997754   46666543

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.77  E-value=4.1e-17  Score=178.27  Aligned_cols=291  Identities=16%  Similarity=0.122  Sum_probs=200.7

Q ss_pred             HHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcc
Q 010008          143 LCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR  221 (520)
Q Consensus       143 ~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~  221 (520)
                      .+++.+++.||++...+     +++|| .+|.++++++++|||.||+...+|-+.+ |+       +.++|.  .++++.
T Consensus       199 eAe~~AA~~fgAd~tyf-----vvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~-ha-------Lilsga--~PVYl~  263 (714)
T PRK15400        199 EAEEYIARVFNADRSYM-----VTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLT-HL-------MMMSDV--TPIYFR  263 (714)
T ss_pred             HHHHHHHHHhCCCcEEE-----EeCchHHHHHHHHHHhcCCCCEEEeecccHHHHH-HH-------HHHcCC--eEEEec
Confidence            35588999999998532     36887 8999999999999999999988776543 22       445665  666643


Q ss_pred             cCC-CC---CCCC-----HHHHHHHhhhc----CCcEEEEcCCCCCC-CCCHHHHHHHHHHhCCEEEEechhhccccccc
Q 010008          222 LDE-ST---GLVD-----YDMLEKTAILF----RPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAAS  287 (520)
Q Consensus       222 ~d~-~~---~~iD-----~d~le~~i~~~----~pklIi~~~s~~p~-~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~  287 (520)
                      ... +.   +.|+     .+.|++.+..+    +|+.+++.+|+|-+ ..|++.|.++|+.++  +++|+||++.+.+..
T Consensus       264 P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p  341 (714)
T PRK15400        264 PTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSP  341 (714)
T ss_pred             ccccccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCCCccEecCHHHHHHHhCCCC--EEEEccchhhhccCc
Confidence            221 11   2345     89999998763    34478888888766 789999999999887  789999987765544


Q ss_pred             ccC--CCCC-cc---c--EEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHh
Q 010008          288 VVA--DPFK-YC---D--VVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA  358 (520)
Q Consensus       288 ~~~--~p~~-~a---D--iv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~  358 (520)
                      ..+  +++. ++   |  +++.|+||+|++... .+|..+...    + .++++.+..-....+|+...+|++.+|...+
T Consensus       342 ~~~~~sam~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~v----d-~~~~n~a~~m~~STSPsY~l~ASLD~a~~~m  416 (714)
T PRK15400        342 IYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDV----N-EETFNEAYMMHTTTSPHYGIVASTETAAAMM  416 (714)
T ss_pred             ccCCcChhhcCCCCCCceEEEEchhhcccchhHHhHHHHcCCC----C-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            432  4443 55   5  999999999988655 666664421    1 2345544333335789999999999888776


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHHH-CC------CEEecCC----------------------------CCCeeEEEEec
Q 010008          359 QSPEFKVYQNKVVSNCRALASRLVE-LG------YKLVSGG----------------------------SDNHLVLVDLR  403 (520)
Q Consensus       359 ~~~~~~~~~~~i~~na~~l~~~L~~-~G------~~v~~~g----------------------------t~~~~~~vd~~  403 (520)
                      ..+..+...++.++.+..+++.|.+ .+      +.+..+.                            .|.-=+++.++
T Consensus       417 ~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~Klti~tp  496 (714)
T PRK15400        417 KGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTP  496 (714)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCcccccccccccCCceEEEEeC
Confidence            5434567778888888888888876 34      4444210                            01111233333


Q ss_pred             C---------CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          404 P---------MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       404 ~---------~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      .         .|+++..+.+.|+++||.+.+..         ...+=    .+.+.|.++++++++.+.|.+.-
T Consensus       497 gi~~~g~~~~~Gipg~~v~~~L~e~gI~~E~~d---------~~~iL----fl~s~g~t~~~~~~L~~aL~~f~  557 (714)
T PRK15400        497 GMKKDGTMSDFGIPASIVAKYLDEHGIVVEKTG---------PYNLL----FLFSIGIDKTKALSLLRALTDFK  557 (714)
T ss_pred             CCCCCccccccCCCHHHHHHHHHHcCCEEEecC---------CCeEE----EEeCCCCCHHHHHHHHHHHHHHH
Confidence            3         46778899999999999997642         12222    24556788999999999887753

>PRK07049 methionine gamma-lyase; Validated

Probab=99.76  E-value=1e-16  Score=169.41  Aligned_cols=217  Identities=18%  Similarity=0.141  Sum_probs=146.9

Q ss_pred             chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccc
Q 010008          134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  213 (520)
Q Consensus       134 ~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~  213 (520)
                      ++....+|    +.+++++|.+.     .+...||++|+.+++.++++|||+|++.+|.|+++.....    ......|.
T Consensus        82 ~Pt~~~Le----~~lA~leg~~~-----~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~----~~l~~~Gi  148 (427)
T PRK07049         82 HPNSEIVE----DRLAVYEGAES-----AALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLA----KTFRNFGV  148 (427)
T ss_pred             CcCHHHHH----HHHHHHhCCCc-----EEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHH----HHHHhcCc
Confidence            34456777    67888998764     4556889999999999999999999999998876532100    00112343


Q ss_pred             eEEEEEcccCCCCCCCCHHHHHHHhh----hcCCcEEEEcCCCCCC--CCCHHHHHHHHHH------hCCEEEEechhhc
Q 010008          214 YFESMPYRLDESTGLVDYDMLEKTAI----LFRPKLIIAGASAYPR--DFDYPRMRQIADA------VGALLMMDMAHIS  281 (520)
Q Consensus       214 ~~~~v~~~~d~~~~~iD~d~le~~i~----~~~pklIi~~~s~~p~--~~d~~~i~~ia~~------~g~~li~D~Ah~~  281 (520)
                        +++.++ +    ..|++++++.+.    ..++|+|++++|+||+  ..|+++|.++|+.      +++++++|++...
T Consensus       149 --~~v~~~-~----~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~  221 (427)
T PRK07049        149 --GAVGFA-D----GLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLG  221 (427)
T ss_pred             --EEEEEe-C----CCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccc
Confidence              444443 1    257777876664    2378999999999997  7899999999988      7999999998432


Q ss_pred             ccccccccCCCCC-cccEEEeccCcccCC---CCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHH
Q 010008          282 GLVAASVVADPFK-YCDVVTTTTHKSLRG---PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH  357 (520)
Q Consensus       282 gli~~~~~~~p~~-~aDiv~~S~hK~l~G---prgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~  357 (520)
                      . .    ...|+. ++|+++.|++|++.|   .|+|+++.++      ++.+++.....+. .++........   +++.
T Consensus       222 ~-~----~~~pl~~g~divv~S~SK~~gG~~glr~G~vv~~~------~l~~~l~~~~~~~-g~~ls~~~a~l---~~r~  286 (427)
T PRK07049        222 P-V----FQKPLEHGADLSVYSLTKYVGGHSDLVAGAVLGRK------ALIRQVRALRSAI-GTQLDPHSCWM---LGRS  286 (427)
T ss_pred             c-c----cCCccccCCCEEEEcCceeecCCCCcEEEEEECCH------HHHHHHHHHHHhc-CCCCCHHHHHH---HHcC
Confidence            2 2    123444 689999999999864   5789999876      6666655432211 11111111111   2222


Q ss_pred             hcCchhHHHHHHHHHHHHHHHHHHHHC-CCE
Q 010008          358 AQSPEFKVYQNKVVSNCRALASRLVEL-GYK  387 (520)
Q Consensus       358 ~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~  387 (520)
                      +  ..+...+++..+|++.+++.|++. ++.
T Consensus       287 L--~tl~~R~~~~~~~a~~la~~L~~~p~V~  315 (427)
T PRK07049        287 L--ETLVLRMERANRNARAVAEFLRDHPKVE  315 (427)
T ss_pred             C--ChHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            2  234666788899999999999884 543

>PRK07505 hypothetical protein; Provisional

Probab=99.76  E-value=1.2e-15  Score=160.59  Aligned_cols=331  Identities=16%  Similarity=0.157  Sum_probs=188.2

Q ss_pred             cceEecCCCCC----hHHHHHHHhhhhhccCC-CCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH
Q 010008           95 SLELIASENFT----SRAVMEAVGSCLTNKYS-EGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS  169 (520)
Q Consensus        95 ~i~Liasen~~----~~~V~ea~~s~l~~~y~-~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs  169 (520)
                      .|++... +++    +|.|++|+...+. +|. .+....+.....+...++    ++++++++|.  +    .+..+||+
T Consensus        48 ~ld~~s~-~~lgl~~~p~v~~A~~~~l~-~~g~~~~~~~~~~~~~~~~~~l----~~~la~~~~~--~----~~~~~sG~  115 (402)
T PRK07505         48 FVNFVSC-SYLGLDTHPAIIEGAVDALK-RTGSLHLSSSRTRVRSQILKDL----EEALSELFGA--S----VLTFTSCS  115 (402)
T ss_pred             EEEeecC-CccCCCCCHHHHHHHHHHHH-HhCCCCCCccchhhhhHHHHHH----HHHHHHHhCC--C----EEEECChH
Confidence            4666543 333    7999999998875 332 111111111123333333    4788889987  2    24457999


Q ss_pred             HHHHHHHHhh----CCCCC-EEEEcCC-CCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCC
Q 010008          170 PANFEVYTAI----LKPHD-RIMGLDL-PHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRP  243 (520)
Q Consensus       170 ~A~~~~l~al----l~pGD-~Vl~~~~-~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~p  243 (520)
                      +|+..++..+    ..+|+ .|++.+. .|++. +. +    ......+.  +++.++.      .|++++++++++ ++
T Consensus       116 ~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~-~~-~----~~~~~~~~--~v~~~~~------~d~~~l~~~~~~-~~  180 (402)
T PRK07505        116 AAHLGILPLLASGHLTGGVPPHMVFDKNAHASL-NI-L----KGICADET--EVETIDH------NDLDALEDICKT-NK  180 (402)
T ss_pred             HHHHHHHHHHHhcccCCCCCCEEEEchhhhHhH-Hh-h----hhhhhcCC--eEEEeCC------CCHHHHHHHHhc-CC
Confidence            9998776432    22343 2545543 23221 10 0    01111122  4444432      488999998876 67


Q ss_pred             cEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhccccc-ccc--c--CCC--CCcccEEEeccCcccCCCCceE
Q 010008          244 KLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVA-ASV--V--ADP--FKYCDVVTTTTHKSLRGPRGGM  314 (520)
Q Consensus       244 klIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~-~~~--~--~~p--~~~aDiv~~S~hK~l~GprgG~  314 (520)
                      +++++..|+||+  ..++++|.++|+++|++||+|++|..+... .+.  .  ...  .+...+++.|++|.+.++ ||+
T Consensus       181 ~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~-Gg~  259 (402)
T PRK07505        181 TVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS-GGV  259 (402)
T ss_pred             CEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc-CeE
Confidence            888888777775  789999999999999999999998543221 111  0  011  112247778999998655 788


Q ss_pred             EEeeCCCcchhhHHHhhcccCCCCC-CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCC
Q 010008          315 IFFKKDPVLGVELESAINNAVFPGL-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS  393 (520)
Q Consensus       315 I~~~~~~~~~~~l~~~i~~~~~p~~-~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt  393 (520)
                      +++.++     ++.+.+.....+.. .++++...+++...+++....+.+.+..+++.++.+.+.+.+...     ..+.
T Consensus       260 ~~~~~~-----~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~g~  329 (402)
T PRK07505        260 IMLGDA-----EQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIPTE-----QSGS  329 (402)
T ss_pred             EEeCCH-----HHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhc-----CCCC
Confidence            876442     56666654333332 234444556555556664444444555555555554433322211     1111


Q ss_pred             CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          394 DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       394 ~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      ...+.++.+.. ..+...+.+.|.+.||.+.....|..  +.....|||+.+..    .+++|++++++.|++++..
T Consensus       330 ~~~i~~~~~~~-~~~~~~~~~~l~~~Gi~v~~~~~p~~--~~~~~~lRi~~~~~----~t~eei~~~~~~l~~~l~~  399 (402)
T PRK07505        330 FLPIRLIYIGD-EDTAIKAAKQLLDRGFYTSPVFFPVV--AKGRAGLRIMFRAS----HTNDEIKRLCSLLKEILDE  399 (402)
T ss_pred             CCCEEEEEeCC-HHHHHHHHHHHHHCCCeEeeecCCCC--CCCCceEEEecCcc----CCHHHHHHHHHHHHHHHHh
Confidence            11222222221 11245677888889999965433321  11236899987754    3589999999999988764

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.76  E-value=1.5e-16  Score=173.75  Aligned_cols=291  Identities=16%  Similarity=0.124  Sum_probs=198.6

Q ss_pred             HHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcc
Q 010008          143 LCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR  221 (520)
Q Consensus       143 ~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~  221 (520)
                      .+++.+++.||++...+     +++|| .+|.++++++++|||+||+...+|-+.+ |+       +.++|.  .++++.
T Consensus       199 eAe~~aA~~fgAd~tyf-----vvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~-~a-------Lilsga--~PVYl~  263 (713)
T PRK15399        199 EAEEYIARTFGAEQSYI-----VTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLA-HL-------LMMSDV--VPIWLK  263 (713)
T ss_pred             HHHHHHHHHhCCCcEEE-----EeCChHHHHHHHHHHhcCCCCEEEeecccHHHHH-HH-------HHHcCC--eeEEec
Confidence            35578899999997532     36887 8999999999999999999988776543 22       345565  666643


Q ss_pred             cCC-CC---CCCCH-----HHHHHHhhhc----CCcEEEEcCCCCCC-CCCHHHHHHHHHHhCCEE-EEechhhcccccc
Q 010008          222 LDE-ST---GLVDY-----DMLEKTAILF----RPKLIIAGASAYPR-DFDYPRMRQIADAVGALL-MMDMAHISGLVAA  286 (520)
Q Consensus       222 ~d~-~~---~~iD~-----d~le~~i~~~----~pklIi~~~s~~p~-~~d~~~i~~ia~~~g~~l-i~D~Ah~~gli~~  286 (520)
                      ... +.   +.|+.     +.|++++.++    +|+.+++.+|+|-+ ..|++.|.++|   |+.+ ++|+||++.+.+.
T Consensus       264 P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~  340 (713)
T PRK15399        264 PTRNALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFH  340 (713)
T ss_pred             ccccccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCCCceeeCHHHHHHHh---CCCEEEEeccchhhhhcC
Confidence            221 11   34555     8898888753    45688888888866 78999999988   6776 6999998766544


Q ss_pred             cccC--CCCC---cccEE---EeccCcccCCCCc-eEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHH
Q 010008          287 SVVA--DPFK---YCDVV---TTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH  357 (520)
Q Consensus       287 ~~~~--~p~~---~aDiv---~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~  357 (520)
                      ...+  +++.   ++|.+   +.|+||+|++... .+|..+...     -.++++.+..-....+|+...+|++.+|...
T Consensus       341 p~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~v-----d~~~~n~a~~m~~STSPsY~LmASLD~a~~~  415 (713)
T PRK15399        341 PIYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGEY-----DEETFNEAFMMHTSTSPSYPIVASVETAAAM  415 (713)
T ss_pred             cccCCcChhhCCCCCCeeeeeeeehhccccccchheeeeecCCC-----CHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence            4222  3332   47866   9999999988765 777775521     1244554433333578999999999988877


Q ss_pred             hcCchhHHHHHHHHHHHHHHHHHHHHC-C------CEEecC-------------C---------------CCCeeEEEEe
Q 010008          358 AQSPEFKVYQNKVVSNCRALASRLVEL-G------YKLVSG-------------G---------------SDNHLVLVDL  402 (520)
Q Consensus       358 ~~~~~~~~~~~~i~~na~~l~~~L~~~-G------~~v~~~-------------g---------------t~~~~~~vd~  402 (520)
                      +.....+...++.++.+..+++.|.+. +      +.+..+             +               .|.-=+++.+
T Consensus       416 m~~~~G~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP~KltI~t  495 (713)
T PRK15399        416 LRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDPVKVTILT  495 (713)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCCcccccccccccccccCCCceEEEEe
Confidence            654345667777888888888888663 3      344321             0               0111123333


Q ss_pred             c---------CCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          403 R---------PMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       403 ~---------~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +         ..|+++..+.+.|+++||.+.+..         ...+=    .+.+.|.++++++++.+.+.+.-+
T Consensus       496 ~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~~d---------~~~vL----~l~s~g~t~~~~~~L~~aL~~f~~  558 (713)
T PRK15399        496 PGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTG---------PYNLL----FLFSIGIDKTKAMGLLRGLTEFKR  558 (713)
T ss_pred             cCcccccccccCCCCHHHHHHHHHHcCCEEEecC---------CCeEE----EEeCCCCCHHHHHHHHHHHHHHHH
Confidence            3         347889999999999999997642         11222    255567889999999998877633

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.75  E-value=2.1e-16  Score=162.26  Aligned_cols=288  Identities=20%  Similarity=0.217  Sum_probs=186.5

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      |++..+.+|    ++++++-|.+.     -+...||..|+..++.+++++||+|+..+..||+.+...-    +-..-.|
T Consensus        61 ~nPT~~~lE----~~~a~LEg~~~-----~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~----~~l~~~g  127 (396)
T COG0626          61 GNPTRDALE----EALAELEGGED-----AFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFE----KILQKFG  127 (396)
T ss_pred             CCccHHHHH----HHHHHhhCCCc-----EEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHH----HHHHhcC
Confidence            577888998    56778888875     3556899999999999999999999999988887643211    1111123


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                        +++..++      .-|.+++++++.+.+||+|++..|+||+  ..|+++|+++|+++|+++++|.+...+     +..
T Consensus       128 --i~~~~~d------~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP-----~~q  194 (396)
T COG0626         128 --VEVTFVD------PGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP-----VLQ  194 (396)
T ss_pred             --eEEEEEC------CCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc-----ccc
Confidence              3444432      1244566666663489999999999998  889999999999999999999985443     445


Q ss_pred             CCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCC--CCCCCCChHHHHHHHHHHHHHhcCchhH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVF--PGLQGGPHNHTIGGLAVCLKHAQSPEFK  364 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~--p~~~g~p~~~~iaala~al~~~~~~~~~  364 (520)
                      .|++ |+|||+.|.+|.+.|-.   +|+++++++     ++.+.+.....  .|..-+|.-    | ...++-+.  -+.
T Consensus       195 ~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~-----~~~~~~~~~~~~~~G~~l~p~d----A-~l~lRGlk--TL~  262 (396)
T COG0626         195 RPLELGADIVVHSATKYLGGHSDVLGGVVLTPNE-----ELYELLFFAQRANTGAVLSPFD----A-WLLLRGLR--TLA  262 (396)
T ss_pred             ChhhcCCCEEEEeccccccCCcceeeeEEecChH-----HHHHHHHHHHHhhcCCCCCHHH----H-HHHHhccc--hHH
Confidence            6777 79999999999998854   387777774     55555422111  122222221    1 22334332  246


Q ss_pred             HHHHHHHHHHHHHHHHHHH-CCCE-EecCCC---------------CCeeEEEEecCCCCCHHHHHHHHhhcCe---EEc
Q 010008          365 VYQNKVVSNCRALASRLVE-LGYK-LVSGGS---------------DNHLVLVDLRPMGIDGARVEKILDMASI---TLN  424 (520)
Q Consensus       365 ~~~~~i~~na~~l~~~L~~-~G~~-v~~~gt---------------~~~~~~vd~~~~g~~~~~~~~~L~~~gI---~v~  424 (520)
                      .+.++..+|+..+++.|++ ..+. |..++-               .+.++.+.+..    ++.+.++++...+   .++
T Consensus       263 ~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~----~~~~~~f~~~L~l~~~a~S  338 (396)
T COG0626         263 LRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKN----EEAAKKFLDSLKLFKLAES  338 (396)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCC----hHHHHHHHHhCCccEEecc
Confidence            6788999999999999988 3443 443331               22344444432    2555566655444   333


Q ss_pred             CCC------CCC---------CC---CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          425 KNS------VPG---------DK---SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       425 ~~~------~Pg---------~~---~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      -+.      .|-         +.   ....++-||++..        -||.+.+.+-|++++..
T Consensus       339 lGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVG--------lEd~eDLi~Dl~~Al~~  394 (396)
T COG0626         339 LGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVG--------LEDVEDLIADLEQALAK  394 (396)
T ss_pred             CCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEec--------CCCHHHHHHHHHHHHHh
Confidence            321      121         00   1122456898865        37777777777777653

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.75  E-value=1.5e-16  Score=167.97  Aligned_cols=159  Identities=21%  Similarity=0.185  Sum_probs=120.5

Q ss_pred             chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccc
Q 010008          134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  213 (520)
Q Consensus       134 ~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~  213 (520)
                      ++..+++|    +++++++|.+.     .+.+.||+.|+..++.++++|||+|++.++.|++.+...    ...+...|.
T Consensus        56 ~p~~~~le----~~lA~l~g~~~-----~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~----~~~~~~~G~  122 (418)
T TIGR01326        56 NPTTDVLE----QRIAALEGGVA-----ALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLF----KHTLKRLGI  122 (418)
T ss_pred             ChhHHHHH----HHHHHHhCCCe-----EEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHH----HHHHHHcCc
Confidence            45566776    67889999864     366789999999999999999999999998886643211    011223344


Q ss_pred             eEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCC
Q 010008          214 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD  291 (520)
Q Consensus       214 ~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~  291 (520)
                        +++.++.      .|++++++++++ ++++|++..++||+  ..|+++|+++|+++|+++++|+++..+..     ..
T Consensus       123 --~v~~v~~------~d~~~l~~~l~~-~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~~-----~~  188 (418)
T TIGR01326       123 --EVRFVDP------DDPEEFEKAIDE-NTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYL-----CR  188 (418)
T ss_pred             --EEEEECC------CCHHHHHHhcCc-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhhc-----CC
Confidence              5555443      289999999987 89999999888886  78999999999999999999999865532     23


Q ss_pred             CCC-cccEEEeccCcccCC--CCceEEEeeC
Q 010008          292 PFK-YCDVVTTTTHKSLRG--PRGGMIFFKK  319 (520)
Q Consensus       292 p~~-~aDiv~~S~hK~l~G--prgG~I~~~~  319 (520)
                      |+. ++|++++|+||++.|  .+.|+++.++
T Consensus       189 ~l~~g~Divv~S~sK~l~g~G~~lGg~v~~~  219 (418)
T TIGR01326       189 PIDHGADIVVHSATKYIGGHGTAIGGVIVDG  219 (418)
T ss_pred             chhcCCeEEEECccccccCCccceEEEEEec
Confidence            444 699999999999854  4556666654

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.74  E-value=6.9e-16  Score=158.77  Aligned_cols=334  Identities=17%  Similarity=0.198  Sum_probs=218.4

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC-C
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK-P  182 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~-p  182 (520)
                      -+|+..++||..           |..-|+|.+.+..||    +.++++||.+.     -+.+++|..++..++..+++ |
T Consensus        54 apS~~m~aAM~~-----------GDD~Y~gdpSv~~Le----e~vael~G~E~-----alpthqGRgaE~Il~~~~~~~~  113 (467)
T TIGR02617        54 AVTQSMQAAMMR-----------GDEAYSGSRSYYALA----ESVKNIFGYQY-----TIPTHQGRGAEQIYIPVLIKKR  113 (467)
T ss_pred             CCCHHHHHHHHc-----------CCcccccCchHHHHH----HHHHHHhCCce-----EEECCCCchHHHHHHHhhcccc
Confidence            468888888863           333477777788888    56778999986     35678999999999999998 8


Q ss_pred             CCEEEEcCC----CCCccccccccccccccccccceEEEEEcc--------cC-CCCCCCCHHHHHHHhhhcCC---cEE
Q 010008          183 HDRIMGLDL----PHGGHLSHGFMTPKRRVSGTSIYFESMPYR--------LD-ESTGLVDYDMLEKTAILFRP---KLI  246 (520)
Q Consensus       183 GD~Vl~~~~----~~~ghls~g~~~~~~~v~~~g~~~~~v~~~--------~d-~~~~~iD~d~le~~i~~~~p---klI  246 (520)
                      ||++.+-..    .|..|+..+    ...+...|.  .++.+.        ++ +..|.+|+++|+++++++.+   -.+
T Consensus       114 g~e~g~~~~~~~v~hn~~fett----~g~a~l~G~--~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v  187 (467)
T TIGR02617       114 EQEKGLDRSKMVAFSNYFFDTT----QGHSQINGC--TARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYI  187 (467)
T ss_pred             cccccccccccccceEEEEecc----hHHHHHcCc--eeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceee
Confidence            998885443    232222211    112344554  332221        11 12489999999999986322   222


Q ss_pred             EEc---CCCCCCCC---CHHHHHHHHHHhCCEEEEechhhcc-c--------ccccccCC-----CCCcccEEEeccCcc
Q 010008          247 IAG---ASAYPRDF---DYPRMRQIADAVGALLMMDMAHISG-L--------VAASVVAD-----PFKYCDVVTTTTHKS  306 (520)
Q Consensus       247 i~~---~s~~p~~~---d~~~i~~ia~~~g~~li~D~Ah~~g-l--------i~~~~~~~-----p~~~aDiv~~S~hK~  306 (520)
                      ...   +...+.++   ++++++++|++||+.++.|+|-.+. .        .+.+..+.     -+.++|.++.|++|.
T Consensus       188 ~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKg  267 (467)
T TIGR02617       188 VATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKD  267 (467)
T ss_pred             eeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCC
Confidence            222   22223344   5678889999999999999986553 2        12232211     125799999999999


Q ss_pred             cCCCCceEEEeeCCCcchhhHHHhhccc-----CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 010008          307 LRGPRGGMIFFKKDPVLGVELESAINNA-----VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRL  381 (520)
Q Consensus       307 l~GprgG~I~~~~~~~~~~~l~~~i~~~-----~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L  381 (520)
                      +..|-||++.++++.  +.++.++.+..     -|+. +||.....+.|+|+.|.+...   .+|.++.....++|.+.|
T Consensus       268 lgApvGg~Lag~d~~--~~~l~~~~~~~~i~~EGf~t-YGGlagrd~ea~a~Gl~e~~~---~~yl~~ri~qv~yl~~~L  341 (467)
T TIGR02617       268 AMVPMGGLLCFKDDS--FFDVYTECRTLCVVQEGFPT-YGGLEGGAMERLAVGLYDGMN---LDWLAYRINQVQYLVNGL  341 (467)
T ss_pred             CCCcccceEEecchh--HHHHHHHHHhhcccccCCcC-cCchhHHHHHHHHhhhhhccc---HHHHHHHHHHHHHHHHHH
Confidence            999999999999850  00222332221     1332 577777889999999998765   456677777789999999


Q ss_pred             HHCCCEEecCCCCCeeEEEEecCC-------CCCHHH-HHHHHhhcCeEE-cCCCC-----CCCCCCCC--CCEEEEccC
Q 010008          382 VELGYKLVSGGSDNHLVLVDLRPM-------GIDGAR-VEKILDMASITL-NKNSV-----PGDKSALV--PGGIRIGSP  445 (520)
Q Consensus       382 ~~~G~~v~~~gt~~~~~~vd~~~~-------g~~~~~-~~~~L~~~gI~v-~~~~~-----Pg~~~~~~--~~giRig~~  445 (520)
                      .+.|++++.  +..|-+++|....       ...+.. +..+-.+.||.. ..+++     |-......  -.-+|+..|
T Consensus       342 ~~~Gvpi~~--~Gghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~~~el~Rlaip  419 (467)
T TIGR02617       342 EEIGVVCQQ--AGGHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPCPAELLRLTIP  419 (467)
T ss_pred             HhCCCcEEe--cCccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecceecccCCCCCccCCCccceeeeccc
Confidence            999999987  4468788875421       223333 334446788863 22332     21111111  245899755


Q ss_pred             CccccCCCHHHHHHHHHHHHHHHHHHHHH
Q 010008          446 AMTTRGFSEKEFVAIADFIHEGVEITLEA  474 (520)
Q Consensus       446 ~~tt~g~~~~d~~~la~~i~~~l~~~~~~  474 (520)
                         +|-.|.+.|+.+++.+..+.++...+
T Consensus       420 ---Rrvyt~~h~d~v~~~~~~~~~~~~~i  445 (467)
T TIGR02617       420 ---RATYTQTHMDFIIEAFKHVKENAPNI  445 (467)
T ss_pred             ---cccccHhHHHHHHHHHHHHHhhhhhc
Confidence               56689999999999999999887544

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.74  E-value=2.6e-15  Score=157.40  Aligned_cols=313  Identities=16%  Similarity=0.134  Sum_probs=183.7

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh----
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI----  179 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al----  179 (520)
                      .-.|.|.+|+...+.+.+..+   ..|  ..+...+++    ++++++++.+.     .+...||++|+.+++.++    
T Consensus        47 h~~p~v~~a~~~~~~~~~~~~---~~~--~~~~~~~la----~~l~~~~~~~~-----v~~~~sGseA~~~al~~ar~~~  112 (389)
T PRK01278         47 HAHPHLVEALKEQAEKLWHVS---NLY--RIPEQERLA----ERLVENSFADK-----VFFTNSGAEAVECAIKTARRYH  112 (389)
T ss_pred             CCCHHHHHHHHHHHHhcCccc---ccc--CChHHHHHH----HHHHhhCCCCE-----EEEcCCcHHHHHHHHHHHHHHH
Confidence            346888888887775422111   111  122222333    56777765442     244678999999988765    


Q ss_pred             CCCCC----EEEEcCCCCCccccccccccccccccccceEEEEEc-ccCCCCC----CCCHHHHHHHhhhcCCcEEEEcC
Q 010008          180 LKPHD----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY-RLDESTG----LVDYDMLEKTAILFRPKLIIAGA  250 (520)
Q Consensus       180 l~pGD----~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~-~~d~~~~----~iD~d~le~~i~~~~pklIi~~~  250 (520)
                      .++||    +|+..++.|.|.....       ....+.......+ +.. .+.    ..|++++++.+++ ++++|++..
T Consensus       113 ~~~G~~~r~~vi~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~l~~~l~~-~~~avivep  183 (389)
T PRK01278        113 YGKGHPERYRIITFEGAFHGRTLAT-------IAAGGQEKYLEGFGPLV-PGFDQVPFGDIEALKAAITP-NTAAILIEP  183 (389)
T ss_pred             HhcCCCCCCEEEEECCCcCCCcHHH-------HhccCChhhcccCCCCC-CCceEeCCCCHHHHHHhhCC-CeEEEEEec
Confidence            56787    8999988764432111       1111110000001 111 111    2689999999987 899999986


Q ss_pred             CCCCC------CCCHHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEeccCccc-CCCCceEEEeeCC
Q 010008          251 SAYPR------DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSL-RGPRGGMIFFKKD  320 (520)
Q Consensus       251 s~~p~------~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S~hK~l-~GprgG~I~~~~~  320 (520)
                      .++++      ..++++|+++|+++|+++|+|++|. |+...+.. . ..+. ..|++  |++|.+ +|+|.|++++++ 
T Consensus       184 ~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~ig~~~~~~-  259 (389)
T PRK01278        184 IQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQC-GMGRTGKLFAHEWAGVTPDIM--AVAKGIGGGFPLGACLATE-  259 (389)
T ss_pred             ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCCcceeecccCCCCCEE--EEehhccCCcceEEEEEcH-
Confidence            55443      2268999999999999999999964 55333311 1 0011 24654  567998 567889999987 


Q ss_pred             CcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCE-Eec--CCCCC
Q 010008          321 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYK-LVS--GGSDN  395 (520)
Q Consensus       321 ~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~-v~~--~gt~~  395 (520)
                           ++.+.+.........+++...+.++ ..+++.+.+++   +.+++.++.+.+.+.|++.  ... ++.  .+ ..
T Consensus       260 -----~~~~~~~~~~~~~t~~~~~~~~aaa-~a~l~~l~~~~---~~~~~~~~~~~l~~~l~~l~~~~~~~~~~v~g-~G  329 (389)
T PRK01278        260 -----EAAKGMTPGTHGSTYGGNPLAMAVG-NAVLDVILAPG---FLDNVQRMGLYLKQKLEGLVDRFPDVIEEVRG-KG  329 (389)
T ss_pred             -----HHHhccCCCCCCCCCCccHHHHHHH-HHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHhhCCCceeeEec-cc
Confidence                 6666665433333334433333333 34566554322   3445555566666666541  121 221  11 12


Q ss_pred             eeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          396 HLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       396 ~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      .++++.+..   +...+.+.|.+.||.+    .|+     ..+.|||+.+..    +++++++++++.|.+++.
T Consensus       330 ~~~~i~~~~---~~~~~~~~l~~~GV~~----~p~-----~~~~lR~~p~~~----~~~~~i~~~l~~l~~~l~  387 (389)
T PRK01278        330 LLLGLKCVV---PNRDLVQALRDEGLLT----VGA-----GDNVVRLLPPLI----ITEEEIDEALERLERAAE  387 (389)
T ss_pred             EEEEEEEec---CHHHHHHHHHHCCeEE----eec-----CCCEEEEeCCcc----cCHHHHHHHHHHHHHHHH
Confidence            334444421   4566777777779998    444     246899986532    458999999999988774

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.73  E-value=1.7e-15  Score=159.20  Aligned_cols=308  Identities=13%  Similarity=0.103  Sum_probs=184.8

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC---
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---  180 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all---  180 (520)
                      .-.|.|.+|+...+.. +....   +++ .++...+++    ++++++++.+.     .+...||++|+.+++....   
T Consensus        56 h~~p~v~~ai~~~~~~-~~~~~---~~~-~~~~~~~l~----~~l~~~~~~~~-----~~~~~SGseA~e~Alk~a~~~~  121 (396)
T PRK04073         56 HRHPKIIQALKDQADK-VTLTS---RAF-HSDQLGPWY----EKVAKLTGKDM-----VLPMNTGAEAVETAIKAARRWA  121 (396)
T ss_pred             CCCHHHHHHHHHHHhh-ccccc---ccc-CCHHHHHHH----HHHHhcCCCCe-----EEEcCChHHHHHHHHHHHHHHh
Confidence            3568888888777643 22111   111 122222333    56777776542     3456899999998887552   


Q ss_pred             ------CCC-CEEEEcCCCCCccccccccccccccccccce-----EE-----EEEcccCCCCCCCCHHHHHHHhhhcCC
Q 010008          181 ------KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----FE-----SMPYRLDESTGLVDYDMLEKTAILFRP  243 (520)
Q Consensus       181 ------~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~-----~~-----~v~~~~d~~~~~iD~d~le~~i~~~~p  243 (520)
                            ++| ++|+..+-.+.|... +      .+.+.+..     +.     +..++      ..|++++++.+.+ ++
T Consensus       122 ~~~~g~~~~r~~ii~~~~~~HG~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~i~~-~~  187 (396)
T PRK04073        122 YDVKGVEPNKAEIIACEGNFHGRTM-A------AVSLSSEEEYKRGFGPMLPGIKKIP------YGDLEALKAAITP-NT  187 (396)
T ss_pred             hhccCCCCCCCEEEEECCCcCCCCH-H------HHhhcCCcccccCCCCCCCCceEeC------CCCHHHHHHhccc-Ce
Confidence                  145 778887654422210 1      11111110     00     01111      1278999998876 78


Q ss_pred             cEEEEcCCCCCC--CCC----HHHHHHHHHHhCCEEEEechhhcccccccc-cC-CCCC-cccEEEeccCcccCC--CCc
Q 010008          244 KLIIAGASAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASV-VA-DPFK-YCDVVTTTTHKSLRG--PRG  312 (520)
Q Consensus       244 klIi~~~s~~p~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~-~p~~-~aDiv~~S~hK~l~G--prg  312 (520)
                      ++|+++.+.+++  ..+    +++|+++|+++|+++|+|++|. |+...+. .. .... ..|++++  +|.+++  +|.
T Consensus       188 ~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g~g~~g~~~~~~~~~~~pdi~~~--sK~lg~gg~~i  264 (396)
T PRK04073        188 AAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQT-GLGRTGKLFACDWDNVTPDMYIL--GKALGGGVFPI  264 (396)
T ss_pred             EEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-CCCcCcHHHHhhhcCCCCCEEEe--cccccCCCCcc
Confidence            999998776664  333    8899999999999999999965 4432221 11 1111 3577765  598843  688


Q ss_pred             eEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecC-
Q 010008          313 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG-  391 (520)
Q Consensus       313 G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~-  391 (520)
                      |++++++      ++.+.+.........+++.....+++ ++|+.+.+.+   +.++..++.+++.+.|++.+...+.. 
T Consensus       265 g~~~~~~------~i~~~~~~~~~~~t~~~~~~~~aaa~-aaL~~~~~~~---l~~~~~~~~~~l~~~L~~l~~~~i~~~  334 (396)
T PRK04073        265 SCVAANR------DILGVFTPGSHGSTFGGNPLACAVSI-AALEVLEEEK---LPERSLELGEYFKEQLKEIDNPMIKEV  334 (396)
T ss_pred             eEEEEcH------HHHhhhcCCCCCCCCCCCHHHHHHHH-HHHHHHHhcC---HHHHHHHHHHHHHHHHHhhcCCcccce
Confidence            9999988      67776654333233444444444444 4676554333   34556667888888888754322221 


Q ss_pred             CCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          392 GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       392 gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      .....++.+++..   +...+.+.|.+.||.+..    .     .++.|||+.+..    .+++|++++++.|++++
T Consensus       335 ~~~g~~~~~~~~~---~~~~~~~~l~~~Gv~~~~----~-----~~~~iRi~p~l~----~t~e~i~~~~~~l~~~l  395 (396)
T PRK04073        335 RGRGLFIGVELNE---PARPYCEALKEEGLLCKE----T-----HETVIRFAPPLV----ITKEELDWAFEKIKAVL  395 (396)
T ss_pred             ecceEEEEEEecc---hHHHHHHHHHHCCeEEec----C-----CCCEEEEECCcc----cCHHHHHHHHHHHHHHh
Confidence            0123445566532   356677778889999842    1     246899987644    45899999999998765

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.73  E-value=3.9e-16  Score=149.56  Aligned_cols=311  Identities=19%  Similarity=0.213  Sum_probs=206.3

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC-CCC
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL-KPH  183 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all-~pG  183 (520)
                      +..+.+++|....        .|..-|+-.+....||    ++.+++||-+..     +.++||+.+|+++++.-+ +||
T Consensus        34 PTdeMr~am~eA~--------vgDdVyGeD~tt~rLE----~~vA~l~GKEAg-----LFv~SGTmgNllaIm~Hc~~rg   96 (384)
T KOG1368|consen   34 PTDEMRRAMAEAS--------VGDDVYGEDPTTNRLE----QRVAELFGKEAG-----LFVPSGTMGNLLAIMVHCHQRG   96 (384)
T ss_pred             ChHHHHHHHhhcc--------cCcccccCCccHHHHH----HHHHHHhCccce-----eeecccccccHHHHHHHhcCCC
Confidence            3566777776542        2334456556667788    678899999874     445899999998888764 599


Q ss_pred             CEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcC-------CcEEEEcCCCC--C
Q 010008          184 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR-------PKLIIAGASAY--P  254 (520)
Q Consensus       184 D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~-------pklIi~~~s~~--p  254 (520)
                      .+|++-+..|-    |-|-.. ....+.|.  .+.++.. ++++.+|+++||..+...+       +|+|++....+  +
T Consensus        97 ~eii~gd~~HI----~~~E~g-g~s~l~gv--~~~tv~~-e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~G  168 (384)
T KOG1368|consen   97 SEIIVGDRAHI----HRYEQG-GISQLAGV--HVRTVKN-ENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCG  168 (384)
T ss_pred             ceEEeccchhe----eehhcc-Chhhhccc--eeEeeee-CCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccC
Confidence            99998776542    111110 11233444  3334332 3568999999999997433       58998875543  4


Q ss_pred             C-CCCH---HHHHHHHHHhCCEEEEechhhcccc-cccccCCC-CCcccEEEeccCcccCCCCceEEEeeCCCcchhhHH
Q 010008          255 R-DFDY---PRMRQIADAVGALLMMDMAHISGLV-AASVVADP-FKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELE  328 (520)
Q Consensus       255 ~-~~d~---~~i~~ia~~~g~~li~D~Ah~~gli-~~~~~~~p-~~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~  328 (520)
                      + ..|+   +++.++|+++|+.|+.|+|...... +.++...- ...+|-|...++|.|..|-|.+|++++      ++.
T Consensus       169 g~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAPVGSViVG~k------~FI  242 (384)
T KOG1368|consen  169 GKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAPVGSVIVGSK------DFI  242 (384)
T ss_pred             ceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCcccEEEccH------HHH
Confidence            3 5555   4677889999999999998654322 22221110 125788888999999999999999999      676


Q ss_pred             Hhh---cccCCCCCCCCChHH-HHHHHH-HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCC-CEEecCCCCCeeEEEEe
Q 010008          329 SAI---NNAVFPGLQGGPHNH-TIGGLA-VCLKHAQSPEFKVYQNKVVSNCRALASRLVELG-YKLVSGGSDNHLVLVDL  402 (520)
Q Consensus       329 ~~i---~~~~~p~~~g~p~~~-~iaala-~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G-~~v~~~gt~~~~~~vd~  402 (520)
                      ++.   +++.-    ||.--. .+||.+ ++|.    ..+. ..++..+.++.|++.++..+ +++-.+..+++++.+.+
T Consensus       243 ~kA~~~RKalG----GGmRQsGvLaaaaLval~----~~~~-~L~~dHk~A~~lAe~~~~~~~i~v~v~a~etNiv~~~l  313 (384)
T KOG1368|consen  243 DKARHFRKALG----GGMRQSGVLAAAALVALD----ENVP-LLRADHKRAKELAEYINTPEEIRVEVPAVETNIVNMVL  313 (384)
T ss_pred             HHHHHHHHHhc----CchhHHHHHHHHHHHHhh----cchH-HHHHHHHHHHHHHHHhccccceeeecchhhcceeeeec
Confidence            543   34322    221111 222221 2333    2333 45666778899999998865 88766655677777666


Q ss_pred             cCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          403 RPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       403 ~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      ...+++.+++.+.|++.||.+    ++|+     ...+||.++.    ..+.++++.+...+.+.+
T Consensus       314 ~q~~~~~~~l~~~~~k~gi~l----m~~~-----s~r~Rivlh~----Qvt~~~ve~~~~~~~k~~  366 (384)
T KOG1368|consen  314 CQARLTAEELCKFLEKNGILL----MGGA-----SRRIRIVLHH----QVTDEDVEYVKSVLSKKF  366 (384)
T ss_pred             ccccCCHHHHHHHHHHCCeEE----eecc-----ccceEEEEEE----ecCHHHHHHHHHHHHHHH
Confidence            666789999999999999998    4443     3469998763    456899999988885443

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.73  E-value=1.6e-15  Score=150.25  Aligned_cols=334  Identities=17%  Similarity=0.199  Sum_probs=223.7

Q ss_pred             ceEecCCCCC----hHHHHHHHhhhhhccCCCCCCCCCCCCc-chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHH
Q 010008           96 LELIASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP  170 (520)
Q Consensus        96 i~Liasen~~----~~~V~ea~~s~l~~~y~~G~p~~ryy~g-~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~  170 (520)
                      +...-|..|.    .|.|++||...+. +|..|--|.|--.| +.+.-.+|    ..++++.+-+.+     +..+|.--
T Consensus       173 VtVWCSNDYLgms~Hp~V~~A~~~tl~-~hG~GAGGTRNIsG~s~~hv~LE----~eLA~LHqK~aA-----LlFsSCfV  242 (570)
T KOG1360|consen  173 VTVWCSNDYLGMSRHPEVLDAMHDTLD-RHGAGAGGTRNISGHSKHHVRLE----AELADLHQKEAA-----LLFSSCFV  242 (570)
T ss_pred             eEEEecCccccccCChHHHHHHHHHHH-HcCCCcCCccccCCCCchhhhHH----HHHHHHhcCcce-----eeeeeeee
Confidence            4444455553    5999999998874 55556666664444 44445666    457788877753     33466668


Q ss_pred             HHHHHHHhh--CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc---CCcE
Q 010008          171 ANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RPKL  245 (520)
Q Consensus       171 A~~~~l~al--l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~---~pkl  245 (520)
                      ||...+..|  .-||.+|..-...|.+.+.        .+.-++.. +.++       ..-|+++|++++...   .||+
T Consensus       243 ANDstLftLak~lpgcei~SD~gNHASMI~--------GIrns~v~-K~IF-------rHND~~hL~~lL~~~~~svPKi  306 (570)
T KOG1360|consen  243 ANDSTLFTLAKKLPGCEIFSDEGNHASMIQ--------GIRNSRVP-KHIF-------RHNDLDHLEQLLQSSPKSVPKI  306 (570)
T ss_pred             ccchHHHHHHHHCCCcEEeccccchHHHHH--------HhhhcCCc-ceee-------ccCCHHHHHHHHHhCCCCCCce
Confidence            888888877  3488888866554433221        11112210 1111       134888888888653   5788


Q ss_pred             EEEc--CCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccc---cc--cCCCCCcccEEEeccCcccCCCCceEEEee
Q 010008          246 IIAG--ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA---SV--VADPFKYCDVVTTTTHKSLRGPRGGMIFFK  318 (520)
Q Consensus       246 Ii~~--~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~---~~--~~~p~~~aDiv~~S~hK~l~GprgG~I~~~  318 (520)
                      |.+.  +|..+.+.|+++|+++|+++|++..+|+.|..|+...   |+  .+..+...||+++|+-|.| |--||+|...
T Consensus       307 vAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKaf-GcVGGYIAat  385 (570)
T KOG1360|consen  307 VAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAF-GCVGGYIAAT  385 (570)
T ss_pred             EEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhc-ccccceehhh
Confidence            8876  4455559999999999999999999999999998642   22  2222335899999999997 5678999988


Q ss_pred             CCCcchhhHHHhhcccCCCCC--CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCe
Q 010008          319 KDPVLGVELESAINNAVFPGL--QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH  396 (520)
Q Consensus       319 ~~~~~~~~l~~~i~~~~~p~~--~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~  396 (520)
                      .      ++.+.+++..-.++  ..-|.+ .+++.-.|.+.+...+....+++.++|.+++.+.|.+.|++++..  ++|
T Consensus       386 ~------~LvDmiRSyAaGFIFTTSLPP~-vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~GiPVi~~--pSH  456 (570)
T KOG1360|consen  386 R------KLVDMIRSYAAGFIFTTSLPPM-VLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMELGIPVIPN--PSH  456 (570)
T ss_pred             h------hHHHHHHHhcCceEEecCCChH-HHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCcccCC--Ccc
Confidence            7      78888876532222  233333 344433466666666667778888999999999999999999874  578


Q ss_pred             eEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          397 LVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       397 ~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      ++-+.+....+..+....++.+.||.|...-+|-  -+.++..+||...    -+.+++-|+.+.+.+..+++..
T Consensus       457 IiPv~vgda~l~~~~sd~Li~~h~iYvQaINyPT--V~rG~E~LRiaPT----P~HT~~mm~~lv~~l~~vw~~v  525 (570)
T KOG1360|consen  457 IIPVRVGDAALAKQASDILISKHNIYVQAINYPT--VARGTERLRIAPT----PHHTPQMMNILVNALLDVWNEV  525 (570)
T ss_pred             eeeeeccCHHHHHHHHHHHHHhcCeEEEeccCCc--ccccceeeecCCC----CCCCHHHHHHHHHHHHHHHHHc
Confidence            8766665433333444556788999986533442  2345667999432    3456888999999999988753

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.73  E-value=5.9e-15  Score=155.16  Aligned_cols=317  Identities=19%  Similarity=0.145  Sum_probs=188.8

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC-CCCCceeeecCChHHHHHHHHHhhCCCC
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAILKPH  183 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~-~~~~~~~V~~~sGs~A~~~~l~all~pG  183 (520)
                      .+|.|.+++...+... .  ....+| .. ....++    .++++++++.+ ++.   .+...||++|+.+++..+..+|
T Consensus        60 ~~p~v~~ai~~~~~~~-~--~~~~~~-~~-~~~~~l----a~~l~~~~~~~~~~~---v~~~~sgsea~~~al~~~~~~g  127 (398)
T PRK03244         60 AHPAVVEAVTRQLATL-G--HVSNLF-AT-EPQIAL----AERLVELLGAPEGGR---VFFCNSGAEANEAAFKLARLTG  127 (398)
T ss_pred             CCHHHHHHHHHHHHhc-c--CccCcc-CC-HHHHHH----HHHHHHhCCCCCCCE---EEEeCchHHHHHHHHHHHHHHC
Confidence            3688888888777542 1  111122 21 112223    36788888854 232   2334677799999998776677


Q ss_pred             -CEEEEcCCCCCccccccccccccccccccceEEEEEc-ccCCCC---CCCCHHHHHHHhhhcCCcEEEEcCCCCCC--C
Q 010008          184 -DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY-RLDEST---GLVDYDMLEKTAILFRPKLIIAGASAYPR--D  256 (520)
Q Consensus       184 -D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~-~~d~~~---~~iD~d~le~~i~~~~pklIi~~~s~~p~--~  256 (520)
                       ++|+..+..|.|+...       .....|.......+ ++..+.   -..|++++++.+.+ ++++|++..+.+++  .
T Consensus       128 ~~~ii~~~~~yhg~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~aviiep~~~~~G~~  199 (398)
T PRK03244        128 RTKIVAAEGGFHGRTMG-------ALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAVDD-DTAAVFLEPIQGEAGVV  199 (398)
T ss_pred             CCeEEEECCCcCCccHH-------HHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhhcC-CeEEEEEecccCCCCCc
Confidence             5677776655333110       01111110000000 000000   01388999998865 78999998766664  4


Q ss_pred             CC----HHHHHHHHHHhCCEEEEechhhccccccccc-CCCC-C-cccEEEeccCcccC-CCCceEEEeeCCCcchhhHH
Q 010008          257 FD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADPF-K-YCDVVTTTTHKSLR-GPRGGMIFFKKDPVLGVELE  328 (520)
Q Consensus       257 ~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~~p~-~-~aDiv~~S~hK~l~-GprgG~I~~~~~~~~~~~l~  328 (520)
                      .+    +++|+++|+++|+++|+|++|. |+-..+.. .... . ..|++++  +|+|. |.|.|+++.++      ++.
T Consensus       200 ~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~gr~g~~~~~~~~~~~pDi~t~--sK~l~~G~~ig~~~~~~------~~~  270 (398)
T PRK03244        200 PPPAGYLAAAREITDRHGALLVLDEVQT-GIGRTGAWFAHQHDGVTPDVVTL--AKGLGGGLPIGACLAFG------PAA  270 (398)
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEecccc-CCcccchHHhhhhhCCCCCEEEE--chhhhCCcccEEEEEcH------HHH
Confidence            44    8899999999999999999974 54322211 0011 1 3577655  69984 56789999987      666


Q ss_pred             HhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEec--CCCCCeeEEEEecCCC
Q 010008          329 SAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVS--GGSDNHLVLVDLRPMG  406 (520)
Q Consensus       329 ~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~--~gt~~~~~~vd~~~~g  406 (520)
                      +.+.........+++... .++...+|+.+...   ++.+++.+..++|.+.|++.+++++.  .+ ...++++.+... 
T Consensus       271 ~~~~~~~~~~t~~~~~~~-~aaa~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~v~g-~g~~~~i~~~~~-  344 (398)
T PRK03244        271 DLLTPGLHGSTFGGNPVA-CAAALAVLDTIASE---GLLENAERLGEQLRAGIEALGHPLVDHVRG-RGLLLGIVLTAP-  344 (398)
T ss_pred             hhccCCCCcCCCCCCHHH-HHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhcCCCceeeEee-ccEEEEEEEecc-
Confidence            666543222333443333 33333456654433   34566777788899999886553322  12 234566666421 


Q ss_pred             CCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          407 IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       407 ~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                       ....+.+.|.+.||.+...         .+..||++.+..    .+++|++++.+.+++++..
T Consensus       345 -~~~~~~~~l~~~Gv~~~~~---------~~~~iR~~p~~~----~t~~~i~~~~~~l~~~l~~  394 (398)
T PRK03244        345 -VAKAVEAAAREAGFLVNAV---------APDVIRLAPPLI----ITDAQVDAFVAALPAILDA  394 (398)
T ss_pred             -HHHHHHHHHHHCCeEEeec---------CCCEEEEECCCc----CCHHHHHHHHHHHHHHHHh
Confidence             3456778888899998531         246899997753    3489999999999998864

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.72  E-value=4.3e-15  Score=156.74  Aligned_cols=325  Identities=18%  Similarity=0.131  Sum_probs=188.9

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh--CCC
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP  182 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al--l~p  182 (520)
                      .+|.|.+++...+... . .++..  ++..+...    ...++++++++.+.++   .+..+||++|+.+++..+  ..+
T Consensus        53 ~~p~v~~a~~~~~~~~-~-~~~~~--~~~~~~~~----~l~~~l~~~~~~~~~~---v~~~~sgsea~~~al~~~~~~~~  121 (413)
T cd00610          53 NHPEVVEALKEQLAKL-T-HFSLG--FFYNEPAV----ELAELLLALTPEGLDK---VFFVNSGTEAVEAALKLARAYTG  121 (413)
T ss_pred             CCHHHHHHHHHHHHhC-c-CccCc--ccCCHHHH----HHHHHHHHhCCCCCCE---EEEcCcHHHHHHHHHHHHHHHcC
Confidence            5788999988877421 1 11110  01122223    3447888999965543   244578889999998876  467


Q ss_pred             CCEEEEcCCCCCccccccccccccc-c--ccccceEEEEEcccCC-----CCCCCCHHHHHHHhhhc--CCcEEEEcCCC
Q 010008          183 HDRIMGLDLPHGGHLSHGFMTPKRR-V--SGTSIYFESMPYRLDE-----STGLVDYDMLEKTAILF--RPKLIIAGASA  252 (520)
Q Consensus       183 GD~Vl~~~~~~~ghls~g~~~~~~~-v--~~~g~~~~~v~~~~d~-----~~~~iD~d~le~~i~~~--~pklIi~~~s~  252 (520)
                      +|+|++.++.+.|....+....... .  ........++.++.+.     +....|++++++.++.+  ++++|++....
T Consensus       122 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~  201 (413)
T cd00610         122 RKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQ  201 (413)
T ss_pred             CCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEcccc
Confidence            9999999987655321111000000 0  0000001223333321     11344889999988762  46677776444


Q ss_pred             CC-C-CCC----HHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEeccCcccC-CCCceEEEeeCCCc
Q 010008          253 YP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDPV  322 (520)
Q Consensus       253 ~p-~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S~hK~l~-GprgG~I~~~~~~~  322 (520)
                      ++ + ..+    +++|+++|+++|+++|+|++|. |+...+.. . .... ..|++  |++|++. |.|.|++++++   
T Consensus       202 ~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~-g~g~~g~~~~~~~~~~~~d~~--t~sK~l~~g~~~g~~~~~~---  275 (413)
T cd00610         202 GEGGVIVPPPGYLKALRELCRKHGILLIADEVQT-GFGRTGKMFAFEHFGVEPDIV--TLGKGLGGGLPLGAVLGRE---  275 (413)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCcchhhHhhcCCCCCeE--EEcccccCccccEEEEEcH---
Confidence            43 2 455    8999999999999999999975 43222210 0 0011 34665  4559985 46779998877   


Q ss_pred             chhhHHHhh--cccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCC--EEec--CCCCCe
Q 010008          323 LGVELESAI--NNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGY--KLVS--GGSDNH  396 (520)
Q Consensus       323 ~~~~l~~~i--~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~--~v~~--~gt~~~  396 (520)
                         ++.+.+  ....+.+..+++.. .+++...+++.+..+   +..+++.++.+++.+.|++.+.  .++.  .+ ...
T Consensus       276 ---~~~~~~~~~~~~~~~t~~~~~~-~~~a~~a~l~~l~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g~  347 (413)
T cd00610         276 ---EIMDAFPAGPGLHGGTFGGNPL-ACAAALAVLEVLEEE---GLLENAAELGEYLRERLRELAEKHPLVGDVRG-RGL  347 (413)
T ss_pred             ---HHHHhhccCCCCCCCCCCcCHH-HHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhhCCcEEEeec-Cce
Confidence               666664  22222223333333 334444466665432   3456777778888888776321  2221  12 235


Q ss_pred             eEEEEecCCC-------CCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          397 LVLVDLRPMG-------IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       397 ~~~vd~~~~g-------~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      ++++.+....       .+...+.+.|.+.||.+.    |+.     +..+|++.+..    ++++|++++.+.|+++
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~----~~~-----~~~lR~~~~~~----~t~~~i~~~~~~l~~~  412 (413)
T cd00610         348 MIGIELVKDRATKPPDKELAAKIIKAALERGLLLR----PSG-----GNVIRLLPPLI----ITEEEIDEGLDALDEA  412 (413)
T ss_pred             EEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEe----ecC-----CCEEEEECCCc----CCHHHHHHHHHHHHHh
Confidence            5566554321       234567788888999994    321     46799986643    4589999999998765

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PLN02590 probable tyrosine decarboxylase

Probab=99.71  E-value=3.6e-15  Score=160.37  Aligned_cols=313  Identities=16%  Similarity=0.104  Sum_probs=192.6

Q ss_pred             chhHHHHHHHHHHHHHHHcCCCCCCC----ceeeecCChHHHHHHHHHhhCC--------C--CCEEE-EcCCCCCcccc
Q 010008          134 NEYIDELETLCQKRALAAFNLDENKW----GVNVQPLSGSPANFEVYTAILK--------P--HDRIM-GLDLPHGGHLS  198 (520)
Q Consensus       134 ~~~~d~lE~~a~~~~~~lfg~~~~~~----~~~V~~~sGs~A~~~~l~all~--------p--GD~Vl-~~~~~~~ghls  198 (520)
                      .+...++|..+.+|+++++|.+...+    ..-+..++||+||+.++.+.-+        .  .+-|+ +.+-   .|++
T Consensus       165 sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~---aH~S  241 (539)
T PLN02590        165 SPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQ---THSS  241 (539)
T ss_pred             CchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCC---chHH
Confidence            34567899999999999999986411    1123346677999877665311        1  12233 2332   2322


Q ss_pred             ccccccccccccccceE-EEEEcccCC-CCCCCCHHHHHHHhhhc-----CCcEEEEc--CCCCCCCCCHHHHHHHHHHh
Q 010008          199 HGFMTPKRRVSGTSIYF-ESMPYRLDE-STGLVDYDMLEKTAILF-----RPKLIIAG--ASAYPRDFDYPRMRQIADAV  269 (520)
Q Consensus       199 ~g~~~~~~~v~~~g~~~-~~v~~~~d~-~~~~iD~d~le~~i~~~-----~pklIi~~--~s~~p~~~d~~~i~~ia~~~  269 (520)
                      .     .|.+.+.|.+. +++.+++|. +++.+|+++|++++.+.     .|-+|+..  .++.+...|+++|+++|+++
T Consensus       242 v-----~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~  316 (539)
T PLN02590        242 F-----RKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKY  316 (539)
T ss_pred             H-----HHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHh
Confidence            1     24556666542 244555664 35799999999998652     35566655  33344488999999999999


Q ss_pred             CCEEEEechhhcccccccccC---CCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHH-------hhccc----
Q 010008          270 GALLMMDMAHISGLVAASVVA---DPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES-------AINNA----  334 (520)
Q Consensus       270 g~~li~D~Ah~~gli~~~~~~---~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~-------~i~~~----  334 (520)
                      |+||+||+|+.........+.   ..++.+|-++.++|||+..|-+ |++++++..    .+.+       .+...    
T Consensus       317 g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~----~l~~a~~~~~~YL~~~~~~~  392 (539)
T PLN02590        317 GIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRY----SLIDALKTNPEYLEFKVSKK  392 (539)
T ss_pred             CCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHH----HHHHHhhcCHHHhCCccccc
Confidence            999999998543332222211   2345789999999999988877 888888741    1111       11110    


Q ss_pred             --C--C--CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecCCCCCeeEEEEecCCCC
Q 010008          335 --V--F--PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLVLVDLRPMGI  407 (520)
Q Consensus       335 --~--~--p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~gt~~~~~~vd~~~~g~  407 (520)
                        .  +  ...+.+-.. ....++.+|+.....+|.++.++..+.++++.+.|.+ .+|+++.+.. -.++.+.+.+.+.
T Consensus       393 ~~~~d~~d~~i~lsRr~-raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~-l~iVcFr~~~~~~  470 (539)
T PLN02590        393 DTVVNYKDWQISLSRRF-RSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRY-FSLVCFRLAPVDG  470 (539)
T ss_pred             ccCCCccccCCCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCc-eEEEEEEecCCCC
Confidence              0  0  012333332 2345566787777778999999999999999999977 5799987532 2333333433222


Q ss_pred             CH-------HHHHHHHhhcCeE-EcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          408 DG-------ARVEKILDMASIT-LNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       408 ~~-------~~~~~~L~~~gI~-v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +.       ..+.+.|.+.|.. +....+.      +...||+++...   -.+++|++++.+.|.+...
T Consensus       471 ~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~------g~~~lR~~i~n~---~T~~~dv~~~~~~i~~~a~  531 (539)
T PLN02590        471 DEDQCNERNRELLAAVNSTGKIFISHTALS------GKFVLRFAVGAP---LTEEKHVTEAWQIIQKHAS  531 (539)
T ss_pred             CHHHHHHHHHHHHHHHHhCCCEEEEeeEEC------CEEEEEEEecCC---CCCHHHHHHHHHHHHHHHH
Confidence            21       2344555555544 3322111      234799875322   2458999999999987643

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.71  E-value=3.5e-15  Score=141.32  Aligned_cols=323  Identities=17%  Similarity=0.190  Sum_probs=205.9

Q ss_pred             ccceEec--CCCCChHHHHHHHhhhhhccCCCCCCCCCCCC-c------chhHHHHHHHHHHHHHHHcCCCCCCCceeee
Q 010008           94 KSLELIA--SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG-G------NEYIDELETLCQKRALAAFNLDENKWGVNVQ  164 (520)
Q Consensus        94 ~~i~Lia--sen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~-g------~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~  164 (520)
                      ..||+.+  --...+++.++|+-..     .+||.--+|.. |      ++.+..+-    +.+++++|.|.      |.
T Consensus        16 ~~iNv~PiQrGGiLt~eArkal~E~-----gDGYSvCD~C~~Grldei~kPpI~~F~----~dlaeFlg~D~------~R   80 (382)
T COG1103          16 GFINVNPIQRGGILTEEARKALLEW-----GDGYSVCDFCLEGRLDEITKPPIKDFL----EDLAEFLGMDE------VR   80 (382)
T ss_pred             CccccChhhccCcCCHHHHHHHHHh-----cCCcchhhhhccCccccccCCcHHHHH----HHHHHHhCCce------ee
Confidence            5677765  3356789999988643     44554444431 1      12222222    34788999984      56


Q ss_pred             cCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccC-CCCCCCCHHHHHHHhhhc-
Q 010008          165 PLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTGLVDYDMLEKTAILF-  241 (520)
Q Consensus       165 ~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d-~~~~~iD~d~le~~i~~~-  241 (520)
                      +|.|+ +|-++++.+++++||.|++-.+.   |+|...     +....|.  ++..+|-. ...+.|++|...+.+.+. 
T Consensus        81 ~t~GARe~KfavMhal~~~gd~vV~D~~a---HYttyv-----AAEragl--~v~eVp~tg~Pey~i~~e~y~~viee~~  150 (382)
T COG1103          81 VTAGAREAKFAVMHALCKEGDWVVVDSLA---HYTTYV-----AAERAGL--NVAEVPNTGYPEYKITPEGYAEVIEEVK  150 (382)
T ss_pred             ecccchhhHHHHHHHhccCCCEEEEcCcc---hHHHHH-----HHHhcCC--eEEecCCCCCCceEecHHHHHHHHHHHH
Confidence            69999 99999999999999999987764   444322     2233454  55444421 123677877766655432 


Q ss_pred             -----CCcEEEEcCC--CCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCC-CCce
Q 010008          242 -----RPKLIIAGAS--AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRG-PRGG  313 (520)
Q Consensus       242 -----~pklIi~~~s--~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~G-prgG  313 (520)
                           .|.+.++.++  +|+...|.+++++||+++|++++...|+..|-.......   .++|+++.|.||+++. ...|
T Consensus       151 ~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke---~g~DFiVgSGHKsmAAs~PiG  227 (382)
T COG1103         151 DEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKE---IGADFIVGSGHKSMAASAPIG  227 (382)
T ss_pred             hccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccc---cCCCEEEecCccchhccCCee
Confidence                 3677777754  566688999999999999999999999877755322111   1799999999999843 3458


Q ss_pred             EEEeeCCCcchhhHHHhhccc---CCCC---------CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 010008          314 MIFFKKDPVLGVELESAINNA---VFPG---------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRL  381 (520)
Q Consensus       314 ~I~~~~~~~~~~~l~~~i~~~---~~p~---------~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L  381 (520)
                      ++..+.      ++.+.+-+.   .|+-         ..|.|.+..+|++-.-.+.+      ...++-+++++.+.++|
T Consensus       228 vl~~~e------E~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V~eRV------krWdeEv~kaR~fv~el  295 (382)
T COG1103         228 VLAMSE------EWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHVVERV------KRWDEEVEKARWFVAEL  295 (382)
T ss_pred             EEeehh------HHHHHHHhhcccccccceeeeecccccCchHHHHHhcCHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence            887777      555543211   1221         24666666666554333332      22344566788999999


Q ss_pred             HHCC-CEEecCCCCCeeEEEEecCCC---------CCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccC
Q 010008          382 VELG-YKLVSGGSDNHLVLVDLRPMG---------IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRG  451 (520)
Q Consensus       382 ~~~G-~~v~~~gt~~~~~~vd~~~~g---------~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g  451 (520)
                      .+.| +........+|- ++.+....         -.+..+.+-|.+.||.--   -||     .+.++.+++     .|
T Consensus       296 Ekigg~~qlG~rPk~Hd-Lm~Fetp~f~eIakk~~r~gyFlY~ELK~RgI~GI---~~G-----~Tk~~K~sv-----yG  361 (382)
T COG1103         296 EKIGGVKQLGERPKNHD-LMKFETPVFHEIAKKHKRKGYFLYEELKKRGIHGI---QPG-----QTKYFKLSV-----YG  361 (382)
T ss_pred             HHhhhHHHhCCCCcccc-eeeecCchHHHHHHhCcCCceeeHHHHHhcCcccc---ccC-----ceeEEEEEe-----ec
Confidence            8854 766543233452 22222111         123457778888888642   233     356777765     57


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q 010008          452 FSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       452 ~~~~d~~~la~~i~~~l~~  470 (520)
                      ++.+++++++++++++++.
T Consensus       362 l~~Eqve~V~~afkeI~ek  380 (382)
T COG1103         362 LSWEQVEYVVDAFKEIAEK  380 (382)
T ss_pred             CCHHHHHHHHHHHHHHHHh
Confidence            8899999999999998864

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.71  E-value=4.9e-15  Score=143.87  Aligned_cols=340  Identities=17%  Similarity=0.172  Sum_probs=224.3

Q ss_pred             ccceEecCC-CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHH
Q 010008           94 KSLELIASE-NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN  172 (520)
Q Consensus        94 ~~i~Liase-n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~  172 (520)
                      ..|.|..+. .-.|+.+...........|.++...+...+-..|.+.-|. .-++++.+.|+.+.+    |.++.+++.|
T Consensus        31 ~viyLdgnSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~-lgdklApLiGA~~~E----vvv~dtts~n  105 (407)
T COG3844          31 GVIYLDGNSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPER-LGDKLAPLIGARAGE----VVVTDTTSIN  105 (407)
T ss_pred             CeEEeeccccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhH-HHHHhhhhhcCCCCc----eEEeCCcchH
Confidence            557776433 3466677776666666666665544333233445554443 447899999999864    4446666655


Q ss_pred             H-HHHHhh--CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 010008          173 F-EVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  249 (520)
Q Consensus       173 ~-~~l~al--l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~  249 (520)
                      . .++.+.  ..+|++|++++-.  ...| .++.+..-+.+.+..     |++   .+.++++++++++++ .+.+|+++
T Consensus       106 l~k~L~aalr~~~~r~vIv~E~~--~fpT-dly~a~g~~~~~~~~-----~~~---~~~~~P~~~~~~~~d-d~AvV~L~  173 (407)
T COG3844         106 LFKVLAAALRPQEGRRVIVSEGD--NFPT-DLYIAEGLADLLGIG-----YDL---EGVIAPRALEEAITD-DVAVVLLS  173 (407)
T ss_pred             HHHHHHHHhccCCCceEEeecCC--CCCc-chhhhcchhhhhccc-----ccc---eeeeChHHHHHhhcc-ceEEEEec
Confidence            4 355544  4569999987632  1222 222222222233321     222   256788899999988 88888888


Q ss_pred             CCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccC-CCCc-eEEEeeCCCc---
Q 010008          250 ASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLR-GPRG-GMIFFKKDPV---  322 (520)
Q Consensus       250 ~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~-Gprg-G~I~~~~~~~---  322 (520)
                      ..+|-+  ..|+.+|.++|+++|++++.|-||++|.+..+++..   ++|+.+.++||.|. ||.+ ++++..+...   
T Consensus       174 ~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~~Lh~~---gaDfaigcsyKYLNgGPGapa~l~v~~~h~e~~  250 (407)
T COG3844         174 HVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVDLHAA---GADFAIGCSYKYLNGGPGAPAGLFVAPRHRERS  250 (407)
T ss_pred             cccccccceeeHHHHHHHHHhcCceEEeehhcccCCcceeeccc---CCCeeeeeeceeccCCCCCceeEEecccccccc
Confidence            777754  789999999999999999999999999987766655   69999999999995 4544 7777766410   


Q ss_pred             ------ch-----hhHHHhhc--ccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH----CC
Q 010008          323 ------LG-----VELESAIN--NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LG  385 (520)
Q Consensus       323 ------~~-----~~l~~~i~--~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~----~G  385 (520)
                            .+     +.+.+...  .....+.+|++.+..++++..+|+.....+..+.+++-+....++.+-++.    .+
T Consensus       251 ~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~  330 (407)
T COG3844         251 WPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEARCEYYG  330 (407)
T ss_pred             ccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCC
Confidence                  00     11111111  111223478888888888888888766666677778888888887776665    26


Q ss_pred             CEEecCC----CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHH
Q 010008          386 YKLVSGG----SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA  461 (520)
Q Consensus       386 ~~v~~~g----t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la  461 (520)
                      +.+.++-    ..+|..   +...  .+..+.+.|.++||.....         .|+-||+|...+..   +-.|+=..+
T Consensus       331 l~l~tPr~~~~rGsqvS---~~hp--~~~~V~qaLi~rGVigD~R---------~P~vlRfgftPlY~---~~~DVw~AV  393 (407)
T COG3844         331 LTLVTPRAHEERGSQVS---LYHP--HGYQVMQALIDRGVIGDFR---------EPDVLRFGFTPLYV---SFVDVWDAV  393 (407)
T ss_pred             cEEeccchhhhccceee---EecC--cHHHHHHHHHHcCcccccc---------CCCeeeecCcccee---chhHHHHHH
Confidence            7777752    123432   2222  5788999999999987542         47889998754442   357888888


Q ss_pred             HHHHHHHHH
Q 010008          462 DFIHEGVEI  470 (520)
Q Consensus       462 ~~i~~~l~~  470 (520)
                      +.+.+++..
T Consensus       394 ~~L~evL~t  402 (407)
T COG3844         394 DALEEVLDT  402 (407)
T ss_pred             HHHHHHHHh
Confidence            888887764

>PLN02263 serine decarboxylase

Probab=99.71  E-value=2e-15  Score=158.62  Aligned_cols=289  Identities=14%  Similarity=0.085  Sum_probs=187.6

Q ss_pred             HHHHHHHHHHHHHHHcCCCCC-CCceeeecCChHHHHHHHHHhhCC--CCCEEEEcCCCCCccccccccccccccccccc
Q 010008          137 IDELETLCQKRALAAFNLDEN-KWGVNVQPLSGSPANFEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  213 (520)
Q Consensus       137 ~d~lE~~a~~~~~~lfg~~~~-~~~~~V~~~sGs~A~~~~l~all~--pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~  213 (520)
                      ..++|..+.+|++++||.+++ .|+  +..++||++|+.++.+.-+  +...|++++-.   |++.     .|...+.|.
T Consensus       131 s~~~E~~Vi~wla~L~g~p~~~~~G--~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~a---H~Sv-----~KAa~llgi  200 (470)
T PLN02263        131 SRQFEVGVLDWFARLWEIEKNEYWG--YITNCGTEGNLHGILVGREVFPDGILYASRES---HYSV-----FKAARMYRM  200 (470)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCeE--EEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCc---cHHH-----HHHHHhcCC
Confidence            568999999999999999863 454  3346667999988776522  33455555543   3222     245666776


Q ss_pred             eEEEEEcccCCCCCCCCHHHHHHHhhhcC--CcEEEEcCCC--CCCCCCHHHHHHHHHHhCC-----EEEEechhhcccc
Q 010008          214 YFESMPYRLDESTGLVDYDMLEKTAILFR--PKLIIAGASA--YPRDFDYPRMRQIADAVGA-----LLMMDMAHISGLV  284 (520)
Q Consensus       214 ~~~~v~~~~d~~~~~iD~d~le~~i~~~~--pklIi~~~s~--~p~~~d~~~i~~ia~~~g~-----~li~D~Ah~~gli  284 (520)
                        +.+.++++ +++.+|+++|++++.+.+  |-+|+++..+  .+...|+++|.++|+++|+     ||++|+|. .|.+
T Consensus       201 --~~~~Vp~d-~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~-GG~~  276 (470)
T PLN02263        201 --ECVKVDTL-VSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGAL-FGLM  276 (470)
T ss_pred             --cceEeccC-CCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccc-hhhH
Confidence              45566666 578999999999887633  5555555333  3348899999999999997     99999984 4543


Q ss_pred             ccc-ccCCCCC---cccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhcc------cCCCCCCCCChHHHHHHHHH
Q 010008          285 AAS-VVADPFK---YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINN------AVFPGLQGGPHNHTIGGLAV  353 (520)
Q Consensus       285 ~~~-~~~~p~~---~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~~------~~~p~~~g~p~~~~iaala~  353 (520)
                      ..- ....++.   .+|-++.++|||+..|-+ |++++++.      ..+.+..      ...+..+|+-+....+.++.
T Consensus       277 lPf~~~~~~~df~~~vDSIsvD~HK~l~~P~~cgvll~R~~------~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~  350 (470)
T PLN02263        277 MPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRME------HINVLSSNVEYLASRDATIMGSRNGHAPIFLWY  350 (470)
T ss_pred             hhhcccccccCCCcCccEEEECCccccCCCcCEEEEEEehh------hHhhhccChHhhCCCCCCcCCCCCcHHHHHHHH
Confidence            211 1111233   489999999999988887 99999873      2221111      01234456655555566777


Q ss_pred             HHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCC
Q 010008          354 CLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKS  433 (520)
Q Consensus       354 al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~  433 (520)
                      .|+.....+|.+..++..++++++.+.|++.|+.++... ...  .+.++..  + +.    ....|..++.        
T Consensus       351 ~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~g~~~~~~p-~s~--~V~f~~p--~-~~----~~~~gW~L~~--------  412 (470)
T PLN02263        351 TLNRKGYRGFQKEVQKCLRNAHYLKDRLREAGISAMLNE-LSS--TVVFERP--K-DE----EFVRRWQLAC--------  412 (470)
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCC-Cce--EEEEecC--c-hH----HhhcceEEcc--------
Confidence            888777778899999999999999999999898876532 222  2333321  1 11    1134555532        


Q ss_pred             CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          434 ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       434 ~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                        .+..++|.+..    ..+.+.++++.+-+.+...
T Consensus       413 --~~~~~Hivvmp----hv~~~~id~fi~DL~~~~~  442 (470)
T PLN02263        413 --QGNIAHVVVMP----SVTIEKLDYFLKELVEKRS  442 (470)
T ss_pred             --CCCcEEEEEcC----CCCHHHHHHHHHHHHHHHh
Confidence              12347775432    1335667776666655543

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.70  E-value=6.2e-15  Score=153.85  Aligned_cols=314  Identities=17%  Similarity=0.139  Sum_probs=185.2

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-CCC
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKP  182 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al-l~p  182 (520)
                      ..+|.|.+++...+.+.+.   ....++  .    +++....+++.+.++.+.     .+...||++|+.+++... ..+
T Consensus        45 ~~~p~v~~a~~~~~~~~~~---~~~~~~--~----~~~~~la~~l~~~~~~~~-----~~~~~sG~~a~~~A~~~a~~~~  110 (377)
T PRK02936         45 HCHPTVTKAVQEQLDDIWH---VSNLFT--N----SLQEEVASLLAENSAGDL-----VFFCNSGAEANEAALKLARKHT  110 (377)
T ss_pred             CCCHHHHHHHHHHHHhccc---cccccC--C----HHHHHHHHHHHhcCCCCE-----EEEeCCcHHHHHHHHHHHHHhc
Confidence            3578888888887764321   111111  1    333334466666665432     244689999999988843 334


Q ss_pred             C-CEEEEcCCCCCccccccccccccccccccce-EEEEEcccCCCC-C--CCCHHHHHHHhhhcCCcEEEEcCCCCCC--
Q 010008          183 H-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDEST-G--LVDYDMLEKTAILFRPKLIIAGASAYPR--  255 (520)
Q Consensus       183 G-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~-~~~v~~~~d~~~-~--~iD~d~le~~i~~~~pklIi~~~s~~p~--  255 (520)
                      | ++|+..+..+.|....+       +...+.. +..-..++.++. .  ..|++++++.+.+ ++++|++....+++  
T Consensus       111 g~~~vi~~~~~~Hg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~ii~e~i~~~~G~  182 (377)
T PRK02936        111 GKSKIVTFEQSFHGRTFGT-------MSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNE-EVAAVMLEVVQGEGGV  182 (377)
T ss_pred             CCCeEEEECCCcCCCcHHh-------hhccCCccccccCCCCCCCceEeCCCCHHHHHHhccC-CeEEEEEecccCCCCC
Confidence            5 67888877653321111       1111110 000000111110 0  1278999998876 78888887443322  


Q ss_pred             ----CCCHHHHHHHHHHhCCEEEEechhhcccccccccCC--CCC-cccEEEeccCccc-CCCCceEEEeeCCCcchhhH
Q 010008          256 ----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK-YCDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVEL  327 (520)
Q Consensus       256 ----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~--p~~-~aDiv~~S~hK~l-~GprgG~I~~~~~~~~~~~l  327 (520)
                          ...+++|+++|+++|+++|+|++| .|+...+....  .+. ..|++  +++|++ .|+|+|++++++      ++
T Consensus       183 ~~~~~~~l~~l~~l~~~~~~~lI~DEv~-~g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G~~ig~v~~~~------~~  253 (377)
T PRK02936        183 IPADPAFLQEVQTLCKKFGALLIIDEVQ-TGIGRTGTLFAYEQFGLDPDIV--TVAKGLGNGIPVGAMIGKK------EL  253 (377)
T ss_pred             ccCCHHHHHHHHHHHHHcCCEEEEeccc-cCCCcCchhhHHHhhCCCCcEE--EEcccccCCCccEEEEEcH------HH
Confidence                234899999999999999999997 46543332100  011 24665  578998 567889999987      67


Q ss_pred             HHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCEEecC-CCCCeeEEEEecC
Q 010008          328 ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVSG-GSDNHLVLVDLRP  404 (520)
Q Consensus       328 ~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~v~~~-gt~~~~~~vd~~~  404 (520)
                      .+.+.........+++... .++...+++....   .++.+++.++.+.+.+.|.+.  ++..+.. .....++++++..
T Consensus       254 ~~~~~~~~~~~t~~~~~~~-~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~  329 (377)
T PRK02936        254 GTAFGPGSHGSTFGGNPLA-MAAAKEVLQVIKQ---PSFLEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLMIGIECTE  329 (377)
T ss_pred             HhhccCCCCCCCCCCCHHH-HHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEeecceEEEEEecc
Confidence            7766543322333443343 4444446765532   244567777788888888762  3433221 0123566777653


Q ss_pred             CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          405 MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       405 ~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                         +...+.+.|.+.||.+.    |+     ..+.||++.+..    .++++++++++.|.+++
T Consensus       330 ---~~~~~~~~l~~~gv~v~----~~-----g~~~lRi~p~~~----~~~~~i~~~i~~l~~~~  377 (377)
T PRK02936        330 ---EVAPVIEQLREEGLLVL----SA-----GPNVIRLLPPLV----VTKEELDQAVYLLKKVL  377 (377)
T ss_pred             ---hHHHHHHHHHHCCeEEe----cC-----CCCEEEEECCcc----cCHHHHHHHHHHHHHhC
Confidence               25667788899999983    32     246899986543    45899999999987753

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=99.70  E-value=3.2e-15  Score=149.05  Aligned_cols=281  Identities=18%  Similarity=0.217  Sum_probs=183.6

Q ss_pred             eeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccc-cccceEEEEEcccCCC-CCCCCHHHHHHHh
Q 010008          162 NVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS-GTSIYFESMPYRLDES-TGLVDYDMLEKTA  238 (520)
Q Consensus       162 ~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~-~~g~~~~~v~~~~d~~-~~~iD~d~le~~i  238 (520)
                      +|.++.|+ .||.++...|.+|||.-|++.|.|+|.-.+        +. ..|  ++++++.++.. ++.|+.+++|++.
T Consensus       148 ~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrd--------l~~rTg--veivpv~c~Ss~~f~itv~alE~A~  217 (471)
T KOG0256|consen  148 RVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRD--------LRWRTG--VEIVPVHCSSSNGFQITVEALEAAL  217 (471)
T ss_pred             ceEEecccchhhHHHHHHhcCCCceeeecCCCCCccccc--------ceeccC--ceEEEEEeecCCCccccHHHHHHHH
Confidence            44456666 899999999999999999999988875221        22 234  47777777654 4799999998876


Q ss_pred             hh-----cCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhccccccccc-CCCCC-------ccc--E
Q 010008          239 IL-----FRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADPFK-------YCD--V  298 (520)
Q Consensus       239 ~~-----~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~~p~~-------~aD--i  298 (520)
                      .+     .+.|.|++..|+||-  ..+   +..+..+|.++|+.||+|+. |+|-++.... .+.++       ..|  -
T Consensus       218 ~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEI-ya~sVF~~~~F~Sv~ev~~~~~~~~~rvH  296 (471)
T KOG0256|consen  218 NQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEI-YAGSVFDKSEFRSVLEVRKDPHLDPDRVH  296 (471)
T ss_pred             HHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehh-hcccccCccCceEHHHHhhccccCCCcEE
Confidence            53     256888888888884  444   55667778899999999998 6676665421 11111       122  4


Q ss_pred             EEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q 010008          299 VTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA  376 (520)
Q Consensus       299 v~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~  376 (520)
                      ++.|++|-|  +|.|-|.|+..++     ++.....+...-+...+..-+.++++- +=++..+....+..+++..+-++
T Consensus       297 ivyslSKD~GlpGfRvGviYS~ne-----~VvsaA~kmssf~~vSs~tQ~~la~LL-SD~~f~~~yl~en~~Rl~~rh~~  370 (471)
T KOG0256|consen  297 IVYSLSKDFGLPGFRVGVIYSNNE-----DVVSAATKMSSFGLVSSQTQYLLASLL-SDEEFTREYLRENNKRLRIRHRY  370 (471)
T ss_pred             EEEEeccccCCCceEEEEEEecCh-----HHHHHHHHHhhccCCcHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHH
Confidence            678899964  7888899999886     665554443222222222222333221 11222221225666777788888


Q ss_pred             HHHHHHHCCCEEecCCCCCeeEEEEecCC----CCCHH-H-HHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccc
Q 010008          377 LASRLVELGYKLVSGGSDNHLVLVDLRPM----GIDGA-R-VEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTT  449 (520)
Q Consensus       377 l~~~L~~~G~~v~~~gt~~~~~~vd~~~~----g~~~~-~-~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt  449 (520)
                      +.+.|++.|+++...+ ...++|+|++..    ...++ + ..+.+++.++.+    -||.. -...+|++|++...   
T Consensus       371 ~~~gLk~lgI~cl~s~-AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnl----SpG~s~~C~EpGWFRvcFAn---  442 (471)
T KOG0256|consen  371 IVEGLKALGIPCLKSN-AGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNL----SPGSSCHCHEPGWFRVCFAN---  442 (471)
T ss_pred             HHhhHHhcCCceeecC-CeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhcccc----CCCCcceecCCCeEEEEecc---
Confidence            9999999999998753 346778998642    11222 1 345566668877    45654 34568999998764   


Q ss_pred             cCCCHHHHHHHHHHHHHHHH
Q 010008          450 RGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       450 ~g~~~~d~~~la~~i~~~l~  469 (520)
                        +.++.++-..+.|+..+.
T Consensus       443 --~~~~t~~~am~Ri~~~~~  460 (471)
T KOG0256|consen  443 --MSEETLEVAMRRLKQFLD  460 (471)
T ss_pred             --CCHHHHHHHHHHHHHHHH
Confidence              445666667777766665

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.70  E-value=1.3e-14  Score=152.37  Aligned_cols=310  Identities=16%  Similarity=0.155  Sum_probs=180.6

Q ss_pred             hHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCC--
Q 010008          106 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH--  183 (520)
Q Consensus       106 ~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pG--  183 (520)
                      .|.|.+++...+... ...  ...|.  .+...+    ..+++++++|.+.     .+...+|++|+.+++.++..++  
T Consensus        57 ~p~v~~a~~~~~~~~-~~~--~~~~~--~~~~~~----la~~l~~~~~~~~-----v~~~~gg~eA~~~al~~a~~~~~~  122 (396)
T PRK02627         57 HPKLVEAIQEQAAKL-IHT--SNLYY--IEPQEE----LAEKLVELSGMDK-----VFFCNSGAEANEAAIKLARKYGHK  122 (396)
T ss_pred             CHHHHHHHHHHHhhc-ccc--ccccC--CHHHHH----HHHHHHhhcCCCE-----EEECCCcHHHHHHHHHHHHHHhcc
Confidence            478888888776532 111  11121  222233    3367778777642     2345677799999998765444  


Q ss_pred             -----CEEEEcCCCCCccccccccccccccccccce-EEEEEcccCCCCC----CCCHHHHHHHhhhcCCcEEEEcCCCC
Q 010008          184 -----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDESTG----LVDYDMLEKTAILFRPKLIIAGASAY  253 (520)
Q Consensus       184 -----D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~-~~~v~~~~d~~~~----~iD~d~le~~i~~~~pklIi~~~s~~  253 (520)
                           ++|++.++.+.|..     ..  .+...+.. +.....++. .+.    ..|++++++++.+ ++++|++..+++
T Consensus       123 ~~~~~~~ii~~~~~yhg~~-----~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~l~~~i~~-~~~~vii~p~~~  193 (396)
T PRK02627        123 KGIEKPEIITAENSFHGRT-----LA--TLSATGQPKYQEGFEPLV-EGFIYVPFNDIEALKAAITD-KTAAVMLEPIQG  193 (396)
T ss_pred             cCCCCCeEEEECCCcCccc-----HH--HHHhcCCccccccCCCCC-CCceEeCCCCHHHHHHhcCC-CeEEEEEecccC
Confidence                 67888887653321     10  11111110 000011111 111    2289999999976 899999976554


Q ss_pred             CC---CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCC---C-cccEEEeccCccc-CCCCceEEEeeCCCc
Q 010008          254 PR---DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YCDVVTTTTHKSL-RGPRGGMIFFKKDPV  322 (520)
Q Consensus       254 p~---~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~---~-~aDiv~~S~hK~l-~GprgG~I~~~~~~~  322 (520)
                      ++   ..   .+++|+++|+++|++||+|++|. |+...+.. .++   . ..|+++  ++|.+ +|.|.|++++++   
T Consensus       194 ~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~-g~g~~g~~-~~~~~~~~~pdi~t--~sK~~~~G~rig~~~~~~---  266 (396)
T PRK02627        194 EGGVNPADKEYLQALRELCDENGILLILDEVQT-GMGRTGKL-FAYQHYGIEPDIMT--LAKGLGGGVPIGAVLAKE---  266 (396)
T ss_pred             CCCCccCCHHHHHHHHHHHHHcCCEEEEechhc-CCCccCce-eeehhcCCCCCEEE--EcchhhCCcccEEEEEcH---
Confidence            43   12   48899999999999999999965 55433321 111   1 246654  66998 567889999987   


Q ss_pred             chhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCEEec--CCCCCeeE
Q 010008          323 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVS--GGSDNHLV  398 (520)
Q Consensus       323 ~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~v~~--~gt~~~~~  398 (520)
                         ++.+.+.........+++.. ..++...+++....   .++.+++.++.+.+.+.|.+.  .+..+.  .+ ...++
T Consensus       267 ---~~~~~~~~~~~~~t~~~~~~-~~~aa~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~g~~~  338 (396)
T PRK02627        267 ---KVADVFTPGDHGSTFGGNPL-ACAAALAVIEIIEE---EGLLENAAEVGEYLRAKLRELLEKYPGIKEVRG-LGLMI  338 (396)
T ss_pred             ---HHHhccCCCCCCCCCCCCHH-HHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHHhCCCeeeecc-CcEEE
Confidence               67666654322223344333 33333345665433   234566666667777766552  121111  12 23455


Q ss_pred             EEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          399 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       399 ~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ++.+.   .+..++.+.|.+.||.+.    |+     ....+|++.+..    .++++++++.+.|.++++
T Consensus       339 ~i~~~---~~~~~~~~~l~~~Gv~v~----~~-----~~~~lRi~~~~~----~~~~~i~~~~~~l~~~l~  393 (396)
T PRK02627        339 GIELD---RPAAEIVKKALEKGLLIN----VT-----GDNVLRLLPPLI----ISKEEIDEAVDRLEEVLK  393 (396)
T ss_pred             EEEec---CcHHHHHHHHHHCCeEEe----ec-----CCCEEEEECCcc----cCHHHHHHHHHHHHHHHH
Confidence            66652   245667777777799994    32     236799986532    458999999999988775

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=99.70  E-value=7.5e-15  Score=147.66  Aligned_cols=298  Identities=22%  Similarity=0.217  Sum_probs=199.3

Q ss_pred             HHHHHHHcCCCCCCCceeeecCChHHHHHHHHH---hh-CCC----CCEEEEcCCCCCccccccccccccccccccceEE
Q 010008          145 QKRALAAFNLDENKWGVNVQPLSGSPANFEVYT---AI-LKP----HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE  216 (520)
Q Consensus       145 ~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~---al-l~p----GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~  216 (520)
                      ++|+++..|.|.    +.+||.+|+++-++-++   +. -..    -+.||+++-.||-+.          .+++-.+++
T Consensus       115 q~~L~~ITG~Da----vsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNP----------ASAam~G~~  180 (496)
T COG1003         115 QEWLKEITGMDA----VSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNP----------ASAAMAGFK  180 (496)
T ss_pred             HHHHHHhcCCce----eeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCCh----------hhHhhcCce
Confidence            489999999997    68999999976555444   43 222    368999987776443          233334468


Q ss_pred             EEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC
Q 010008          217 SMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK  294 (520)
Q Consensus       217 ~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~  294 (520)
                      +|.++.+ ++|.+|+|+|++++.+ ++.++.+.+|+.-+  ..++.+|++|.+++|..|..|+|..-+++..   ..|-.
T Consensus       181 VV~V~~~-~~G~VDlddLk~k~~~-~~AalMiTnPsT~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~---~rPGd  255 (496)
T COG1003         181 VVVVKCD-ENGNVDLDDLRAKAED-NLAALMITNPSTLGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGL---ARPGD  255 (496)
T ss_pred             EEEEecC-CCCCccHHHHHHHhcc-ceeEEEeccCcccccchhhHHHHHHHHHHcCCEEEecCcchhhhhcc---ccccc
Confidence            8888887 6799999999999987 88889898888776  4589999999999999999999865444421   23333


Q ss_pred             -cccEEEeccCcccCCCCc------eEEEeeCCCc---ch---h-hHHH-hhc--c----cCCCCCCCCChHHHHHHHHH
Q 010008          295 -YCDVVTTTTHKSLRGPRG------GMIFFKKDPV---LG---V-ELES-AIN--N----AVFPGLQGGPHNHTIGGLAV  353 (520)
Q Consensus       295 -~aDiv~~S~hK~l~Gprg------G~I~~~~~~~---~~---~-~l~~-~i~--~----~~~p~~~g~p~~~~iaala~  353 (520)
                       ++||+-..+||||+.|.|      |-|.+++...   ..   + +..+ ..+  .    .+....+|+..+..+   +.
T Consensus       256 ~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il~~---a~  332 (496)
T COG1003         256 MGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASILPI---AW  332 (496)
T ss_pred             cccceEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcchHHHH---HH
Confidence             799999999999976654      4455544210   00   0 0000 000  0    000111333333222   22


Q ss_pred             H-HHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCC--CCeeEEEEec----CCCCCHHHHHHHHhhcCeEEcCC
Q 010008          354 C-LKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS--DNHLVLVDLR----PMGIDGARVEKILDMASITLNKN  426 (520)
Q Consensus       354 a-l~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt--~~~~~~vd~~----~~g~~~~~~~~~L~~~gI~v~~~  426 (520)
                      + +..+..++.+...+..+-|++++++.|+. .+++...+.  ..|-+++|.+    ..|++..++.++|.++|+..-.-
T Consensus       333 ~YI~~mG~~GL~~ase~AvLNANYia~rL~~-~y~~~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD~GfHaPT~  411 (496)
T COG1003         333 AYIRMMGADGLKQASEVAVLNANYIARRLKG-YYPVPYTGENRVAHECILDARPLKKETGVRALDVAKRLLDYGFHAPTM  411 (496)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhHHHHHHHhhh-cCccccCCCCcceeEEEeechHhHhhcCCcHHHHHHHHHhcCCCCCcc
Confidence            2 33444456777788889999999999976 566654333  4677888887    45788899999999999986544


Q ss_pred             CCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHHHH
Q 010008          427 SVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLE  473 (520)
Q Consensus       427 ~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~~~  473 (520)
                      ++|-    .+.+.+=|-.    |..-+++++++.++++.++.+...+
T Consensus       412 ~FPl----iV~~tLMIEP----TEsEsk~eLDrf~dami~I~~Ea~~  450 (496)
T COG1003         412 YFPL----IVAGTLMIEP----TESESKEELDRFIDAMIAIREEADA  450 (496)
T ss_pred             cCcc----ccccceeecC----CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            4442    1344444421    2345689999999999888776643

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.69  E-value=6.4e-15  Score=155.83  Aligned_cols=298  Identities=20%  Similarity=0.229  Sum_probs=192.4

Q ss_pred             CCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC
Q 010008          101 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL  180 (520)
Q Consensus       101 sen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all  180 (520)
                      .+..+++.+.+++...+...-  |.++  .|.   ...++|+.+..++++++|++.+..+  +.+..||+||+.++.+.-
T Consensus        70 ~~~~~~~~a~~~~~~~~~~nl--~d~~--~~p---~a~~~E~~~v~~l~~l~~~~~~~~G--~~t~GgTean~lal~aar  140 (460)
T COG0076          70 CPTRVPPVAAELLVSALNKNL--GDPD--ESP---AAAELEERVVNMLSDLLGAPEEASG--TFTSGGTEANLLALLAAR  140 (460)
T ss_pred             CCCCCHHHHHHHHHHHHhhcC--CCcc--cCh---hHHHHHHHHHHHHHHHhCCCCCCce--EEEcChHHHHHHHHHHHH
Confidence            334567777888877765432  3333  122   3568899999999999999744333  334556699997776541


Q ss_pred             C-----C---CC------EEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCc-E
Q 010008          181 K-----P---HD------RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK-L  245 (520)
Q Consensus       181 ~-----p---GD------~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pk-l  245 (520)
                      +     .   +.      +|+++.-   +|++.     .|...+.|...+.++  .++.+..+|++++++++.+.... +
T Consensus       141 ~~~~~~~~~~~~~~~~~P~ii~s~~---aH~s~-----~Kaa~~lG~~~~~v~--~~~~~~~id~~~l~~~i~~~t~~g~  210 (460)
T COG0076         141 ERWRKRALAESGKPGGKPNIVCSET---AHFSF-----EKAARYLGLGLRRVP--TVPTDYRIDVDALEEAIDENTIGGV  210 (460)
T ss_pred             HHHHHHhhhcccccCCCCeEEecCc---chhHH-----HHHHHHhCCCceeEE--eccCccccCHHHHHHHHHhhccCce
Confidence            1     1   11      5666553   34432     245667777555555  44446899999999999984444 1


Q ss_pred             EEEc--CCCCCCCCCHHHHHHHHHHhCCEEEEechhhccccc-ccccCC----CCCcccEEEeccCcccCCCCc-eEEEe
Q 010008          246 IIAG--ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVA-ASVVAD----PFKYCDVVTTTTHKSLRGPRG-GMIFF  317 (520)
Q Consensus       246 Ii~~--~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~-~~~~~~----p~~~aDiv~~S~hK~l~Gprg-G~I~~  317 (520)
                      |+..  .+..+...|+++|.+||+++++|+++|+|. .|.+. ......    -++++|.++.++||++..|.+ |++++
T Consensus       211 vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~-GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~  289 (460)
T COG0076         211 VVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAF-GGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLF  289 (460)
T ss_pred             EEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccc-cceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEEE
Confidence            4443  333444789999999999999999999984 44442 221112    224799999999999888877 99999


Q ss_pred             eCCCcchhhHHHhhccc--CCCC-------CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCC-CE
Q 010008          318 KKDPVLGVELESAINNA--VFPG-------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG-YK  387 (520)
Q Consensus       318 ~~~~~~~~~l~~~i~~~--~~p~-------~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G-~~  387 (520)
                      +++.    ++.+.+...  ..++       ..|+......++....|+.+..++|.+..++..++++++++.|.+.| ++
T Consensus       290 rd~e----~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e  365 (460)
T COG0076         290 RDEE----ALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFE  365 (460)
T ss_pred             ECHH----HhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence            9851    233222211  1111       12233333555566678877678899999999999999999999976 99


Q ss_pred             EecCCCCCeeEEEEecCCC-CC-HHHHHHHHhhcCeEEcC
Q 010008          388 LVSGGSDNHLVLVDLRPMG-ID-GARVEKILDMASITLNK  425 (520)
Q Consensus       388 v~~~gt~~~~~~vd~~~~g-~~-~~~~~~~L~~~gI~v~~  425 (520)
                      ++..+   .+.++.++... .+ .......+++.|..+..
T Consensus       366 ~~~~p---~l~~V~fr~~~~~~~~~~~~~~~~~~gw~v~~  402 (460)
T COG0076         366 LVNEP---ELPIVAFRLKDDEDTLADLSERLDRRGWQVPA  402 (460)
T ss_pred             eecCC---ccceEEEEcCCcccchhchHHHHHhcCceeec
Confidence            98754   33344444321 11 33455666678887765

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.69  E-value=2.4e-15  Score=148.64  Aligned_cols=166  Identities=22%  Similarity=0.168  Sum_probs=125.4

Q ss_pred             CCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccc
Q 010008          124 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT  203 (520)
Q Consensus       124 G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~  203 (520)
                      ||...|.  .++..+.+|    +|++.+-|--.     -+.+.||..|+..++..++++||.|+..+--|||.++.-.. 
T Consensus        53 G~iYsRi--~NPT~~vlE----~RiAaLEGG~a-----a~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~-  120 (426)
T COG2873          53 GNIYTRI--MNPTTDVLE----ERIAALEGGVA-----ALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSH-  120 (426)
T ss_pred             Cceeeec--cCchHHHHH----HHHHHhhcchh-----hhhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHH-
Confidence            5544443  567788999    68888776543     35568999999999999999999999998889887532211 


Q ss_pred             cccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhc
Q 010008          204 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHIS  281 (520)
Q Consensus       204 ~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~  281 (520)
                         .+...|.  ++.+++      ..|++.++++|++ +||+|++..-.||.  +.|+++|.+||+++|+++|+|.+-..
T Consensus       121 ---tl~~~Gi--~v~fvd------~~d~~~~~~aI~~-nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~at  188 (426)
T COG2873         121 ---TLKRLGI--EVRFVD------PDDPENFEAAIDE-NTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFAT  188 (426)
T ss_pred             ---HHHhcCc--EEEEeC------CCCHHHHHHHhCc-ccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCc
Confidence               1122343  555633      2479999999999 99999999888887  78999999999999999999987332


Q ss_pred             ccccccccCCCCC-cccEEEeccCcccCCCC---ceEEEee
Q 010008          282 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFK  318 (520)
Q Consensus       282 gli~~~~~~~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~  318 (520)
                           ...-.|++ ++|||+.|++||+.|-.   ||+|+-.
T Consensus       189 -----pyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~  224 (426)
T COG2873         189 -----PYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDG  224 (426)
T ss_pred             -----ceecchhhcCCCEEEEeecccccCCccccceEEEeC
Confidence                 23346777 89999999999997643   3555543

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.69  E-value=2.5e-15  Score=143.65  Aligned_cols=322  Identities=21%  Similarity=0.232  Sum_probs=209.6

Q ss_pred             ecCCCCC----hHHHHHHHhhhhhccCCCCCCCCCCCCcchhHH-HHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHH
Q 010008           99 IASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYID-ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  173 (520)
Q Consensus        99 iasen~~----~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d-~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~  173 (520)
                      .-..||.    .|.|.+|-...+ ..|..|..+.||-.|++-+. .+|    ..++++.+-+.     .+...|+-.||.
T Consensus        72 FcaNnYLGLsshPeii~a~~~al-eeyGaGlssvrfIcGtq~iHk~LE----~kiAqfh~rED-----~ilypscfdANa  141 (417)
T KOG1359|consen   72 FCANNYLGLSSHPEIINAGQKAL-EEYGAGLSSVRFICGTQDIHKLLE----SKIAQFHGRED-----TILYPSCFDANA  141 (417)
T ss_pred             ecccccccccCChHHHHHHHHHH-HHhCCCccceeEEecchHHHHHHH----HHHHHHhCCCc-----eEEeccccccch
Confidence            3345553    588888877766 45677888889988877654 445    56778777765     344467889999


Q ss_pred             HHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHh---hhcCCcEEEEc-
Q 010008          174 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTA---ILFRPKLIIAG-  249 (520)
Q Consensus       174 ~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i---~~~~pklIi~~-  249 (520)
                      .++.++++|.|-|+.-.+.|.+.+ +|.       .+..      .|      ..+|.-.++...   .+.|-|+|+.. 
T Consensus       142 g~feail~pedAvfSDeLNhASII-dGi-------rLck------ry------~h~dv~~l~~~l~~a~k~r~klv~TDg  201 (417)
T KOG1359|consen  142 GAFEAILTPEDAVFSDELNHASII-DGI-------RLCK------RY------RHVDVFDLEHCLISACKMRLKLVVTDG  201 (417)
T ss_pred             HHHHHhcChhhhhhccccccchhh-hhh-------HHHh------hh------ccchhHHHHHHHHHhhhheEEEEEecc
Confidence            999999999999998887664432 221       1111      11      234444444322   22366777665 


Q ss_pred             -CCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccc---ccc--CCCCCcccEEEeccCcccCCCCceEEEeeCCCcc
Q 010008          250 -ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA---SVV--ADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVL  323 (520)
Q Consensus       250 -~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~---~~~--~~p~~~aDiv~~S~hK~l~GprgG~I~~~~~~~~  323 (520)
                       .|.-+...|+++|.++++++|++|++|++|..|+...   |..  .+....+|++..|+.|.+.|-.||++.+++    
T Consensus       202 ~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~GGyttgp~----  277 (417)
T KOG1359|consen  202 VFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASGGYTTGPK----  277 (417)
T ss_pred             eeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCCCCccCCh----
Confidence             3555558899999999999999999999999887633   111  122235789999999999999999999999    


Q ss_pred             hhhHHHhhcccCCCCCCCCC---hHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEE-
Q 010008          324 GVELESAINNAVFPGLQGGP---HNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVL-  399 (520)
Q Consensus       324 ~~~l~~~i~~~~~p~~~g~p---~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~-  399 (520)
                        .+.+.++..-.|++..+.   ....+++.+  +..++..  .........|.+.+++.+...||.+...   +|.+. 
T Consensus       278 --~li~llrqr~RpylFSnslppavV~~a~ka--~dllm~s--~~~i~~~~a~~qrfr~~me~aGftIsg~---~hPI~p  348 (417)
T KOG1359|consen  278 --PLISLLRQRSRPYLFSNSLPPAVVGMAAKA--YDLLMVS--SKEIQSRQANTQRFREFMEAAGFTISGA---SHPICP  348 (417)
T ss_pred             --hHHHHHHhcCCceeecCCCChhhhhhhHHH--HHHHHhh--HHHHHHHHHHHHHHHHHHHhcCceecCC---CCCccc
Confidence              577766655555554332   233344333  3333321  3345667778888888888899998542   34322 


Q ss_pred             EEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          400 VDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       400 vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +-+.... -...+.+.|...||.|-.-+.|--  |.+...||+-..+.    .+++|++++.+++.++.+.
T Consensus       349 v~lGda~-lA~~~ad~lLk~Gi~Vigfs~PvV--P~gkariRVqiSAa----Ht~edid~~i~Af~~vgr~  412 (417)
T KOG1359|consen  349 VMLGDAR-LASKMADELLKRGIYVIGFSYPVV--PKGKARIRVQISAA----HTEEDIDRLIEAFSEVGRF  412 (417)
T ss_pred             eecccHH-HHHHHHHHHHhcCceEEeecCCcC--CCCceEEEEEEehh----cCHHHHHHHHHHHHHHHHh
Confidence            2122111 123355666788999854333321  23445688866654    4599999999999887653

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.68  E-value=2.1e-14  Score=148.54  Aligned_cols=297  Identities=13%  Similarity=0.152  Sum_probs=191.1

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC-CCCCEEEEcCCCCCccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL-KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT  211 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all-~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~  211 (520)
                      +.++.+.++ .+.+.++++|+.+.+ +.+.+...|||.++.+++..++ ++||+|++..     .++..+..  ......
T Consensus        34 s~~F~~i~~-e~~~~L~~l~~~~~~-~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-----~FG~r~~~--eia~~~  104 (374)
T TIGR01365        34 SKLGKEKLA-EAIKKTREMLGVPAD-YLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-----SFGKGWVT--DVTKQL  104 (374)
T ss_pred             CHHHHHHHH-HHHHHHHHHhCCCCC-cEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-----HHHHHHHH--HHHHhc
Confidence            345555444 567899999998533 3355667888999999999999 5899999753     22222210  112224


Q ss_pred             cce-EEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC--CCCCCCHHHHHHHHHHhCCEEEEechhhcccccccc
Q 010008          212 SIY-FESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASV  288 (520)
Q Consensus       212 g~~-~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~--~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~  288 (520)
                      |.. ...+..+   .+..+|+++++.     +.. |++.++.  .+...|++++...+  +++++++|+.-+.|..    
T Consensus       105 g~~~v~~l~~~---~g~~~~~~~ve~-----~~~-v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~----  169 (374)
T TIGR01365       105 KLPDVRVLEAE---YGKLPDLKKVDF-----KND-VVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQ----  169 (374)
T ss_pred             CCCCcEEEcCC---CCCCCCHHHcCC-----CCC-EEEecCCCchheecccccccccc--CCCcEEEEccchhcCC----
Confidence            441 3333322   345789999872     222 4444333  33366776555322  4899999987555543    


Q ss_pred             cCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhcc---------------------cCC-CCCCCCChH
Q 010008          289 VADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINN---------------------AVF-PGLQGGPHN  345 (520)
Q Consensus       289 ~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~~---------------------~~~-p~~~g~p~~  345 (520)
                       +..+...|++++|.+|+|.+|.| ++++.+++      ..++++.                     ... ..+..+|+.
T Consensus       170 -~l~~d~iDv~~tgsQK~L~~ppGls~v~vs~~------Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v  242 (374)
T TIGR01365       170 -DLDYHKLDVVTFSWQKVLGGEGAHGMLILSPR------AVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSM  242 (374)
T ss_pred             -CCChhHCcEEEEechhccCCCCceEEEEECHH------HHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHH
Confidence             22233589999999999999999 88888874      2222110                     000 122346677


Q ss_pred             HHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHCC-CEEecC--CCCCe-eEEEEecCCCC-----C-----HH
Q 010008          346 HTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELG-YKLVSG--GSDNH-LVLVDLRPMGI-----D-----GA  410 (520)
Q Consensus       346 ~~iaala~al~~~~~~-~~~~~~~~i~~na~~l~~~L~~~G-~~v~~~--gt~~~-~~~vd~~~~g~-----~-----~~  410 (520)
                      +.+.++..+++.+.++ +.+...++..++++.+++++++.| +.++..  ...+. ...+.+...++     +     ..
T Consensus       243 ~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~  322 (374)
T TIGR01365       243 LCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAK  322 (374)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHHH
Confidence            7777777778766654 689999999999999999999998 666652  11223 22334433333     2     57


Q ss_pred             HHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          411 RVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       411 ~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ++.+.|.+.||.+..    |-. ......+|||+...    ++.+|++.+.++|+-+..
T Consensus       323 ~~~~~l~~~gi~i~~----G~~-~~~~~~fRIg~~G~----i~~~di~~l~~~l~~~~~  372 (374)
T TIGR01365       323 ELISTLEKEGVAYDI----GSY-RDAPSGLRIWCGAT----VEKSDLECLCPWLDWAFA  372 (374)
T ss_pred             HHHHHHHHCCEEEec----ccc-ccCCCceEEecCCc----CCHHHHHHHHHHHHHHHh
Confidence            788999999998843    321 22346899998543    558999999999986653

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.68  E-value=6.2e-14  Score=147.45  Aligned_cols=317  Identities=14%  Similarity=0.108  Sum_probs=184.4

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC----
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  180 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all----  180 (520)
                      .+|.|.+++...+.. +..+.+  .++  .+...+    +.+.++++++.+.     .+..+||++||..++..+.    
T Consensus        48 ~~p~v~~a~~~~~~~-~~~~~~--~~~--~~~~~~----~~~~l~~~~~~~~-----~~~~~SGs~A~e~al~~~~~~~~  113 (400)
T PTZ00125         48 CHPKILAALINQAQK-LTLTSR--AFY--NDVLGL----AEKYITDLFGYDK-----VLPMNSGAEAGETALKFARKWGY  113 (400)
T ss_pred             CCHHHHHHHHHHHHh-cccccc--ccc--CHHHHH----HHHHHHhCCCCCE-----EEEeCCcHHHHHHHHHHHHHHHH
Confidence            578899998887643 322221  122  222333    3466777777643     2456899999999888653    


Q ss_pred             ------CCCCEEEEcCCCCCccccccccccccccccccce-EEEEEcccCCC---CCCCCHHHHHHHhhhcCCcEEEEcC
Q 010008          181 ------KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDES---TGLVDYDMLEKTAILFRPKLIIAGA  250 (520)
Q Consensus       181 ------~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~-~~~v~~~~d~~---~~~iD~d~le~~i~~~~pklIi~~~  250 (520)
                            ..+++|+..+-.+.|....       .+...+.. +.....+..+.   -...|++++++.++..++++|++..
T Consensus       114 ~~~~~~~~~~~vl~~~~~~Hg~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v~~ep  186 (400)
T PTZ00125        114 EVKGIPENQAKIIFCNGNFSGRTIG-------ACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQDPNVAAFIVEP  186 (400)
T ss_pred             hccCCCCCCCeEEEECCCcCCccHH-------HHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCCCCeEEEEEcC
Confidence                  1357888877544222110       11111110 00000000000   0124899999998633789999876


Q ss_pred             CCCCC--CCC----HHHHHHHHHHhCCEEEEechhhccccccccc-CCCCC--cccEEEeccCcccCC--CCceEEEeeC
Q 010008          251 SAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADPFK--YCDVVTTTTHKSLRG--PRGGMIFFKK  319 (520)
Q Consensus       251 s~~p~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~~p~~--~aDiv~~S~hK~l~G--prgG~I~~~~  319 (520)
                      +.+++  ..+    +++|+++|++||+++|+|++|. |+...+.. .....  ..|++++|  |++.|  ++.|++++++
T Consensus       187 ~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~-g~g~~G~~~~~~~~~~~pd~~~~s--K~l~~g~~~ig~v~~~~  263 (400)
T PTZ00125        187 IQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQT-GLGRTGKLLAHDHEGVKPDIVLLG--KALSGGLYPISAVLAND  263 (400)
T ss_pred             ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccchhhHHHhcCCCCCEEEEc--ccccCCCcCcEEEEEcH
Confidence            65554  455    9999999999999999999974 44322211 11111  25777654  99854  4779999988


Q ss_pred             CCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC----CCE-EecCCCC
Q 010008          320 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL----GYK-LVSGGSD  394 (520)
Q Consensus       320 ~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~----G~~-v~~~gt~  394 (520)
                            ++.+.+.........+++.... ++...+++.+.++++   .+++.+..+.+.+.|.+.    ++. .+.+  .
T Consensus       264 ------~~~~~~~~~~~~~t~~~~~~~~-~aa~~~l~~i~~~~~---~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~--~  331 (400)
T PTZ00125        264 ------DVMLVIKPGEHGSTYGGNPLAC-AVAVEALEVLKEEKL---AENAQRLGEVFRDGLKELLKKSPWVKEIRG--K  331 (400)
T ss_pred             ------HHHhhccCCCCCCCCCcCHHHH-HHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHhcCCCeEEEec--c
Confidence                  6766665432222334433333 333345666544333   344555566677777552    221 1222  2


Q ss_pred             CeeEEEEecC-CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          395 NHLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       395 ~~~~~vd~~~-~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      ..+.++.+.. .+.+...+.+.|.+.||.+.    |+     ....|||+.+..    ++++|++++.+.|.++++.
T Consensus       332 g~~~~v~~~~~~~~~~~~~~~~l~~~Gv~v~----~~-----~~~~lRi~~~~~----~~~~~i~~~l~~l~~~l~~  395 (400)
T PTZ00125        332 GLLNAIVFDHSDGVNAWDLCLKLKENGLLAK----PT-----HDNIIRFAPPLV----ITKEQLDQALEIIKKVLKS  395 (400)
T ss_pred             cEEEEEEEccCcchHHHHHHHHHHHCCeEEe----ec-----CCCEEEEECCcc----CCHHHHHHHHHHHHHHHHH
Confidence            3344555542 23345567777778999984    32     246899997633    4589999999999988764

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.67  E-value=1.3e-15  Score=139.30  Aligned_cols=163  Identities=26%  Similarity=0.312  Sum_probs=116.1

Q ss_pred             HHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccC
Q 010008          144 CQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD  223 (520)
Q Consensus       144 a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d  223 (520)
                      ++++++++|+.+.+.  +.+. ++|++|+..++.++.++|++|++.++.|.++..  .     .....|.  +++.++.+
T Consensus         5 ~~~~l~~~~~~~~~~--~~~~-~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~--~-----~~~~~g~--~~~~v~~~   72 (170)
T cd01494           5 LEEKLARLLQPGNDK--AVFV-PSGTGANEAALLALLGPGDEVIVDANGHGSRYW--V-----AAELAGA--KPVPVPVD   72 (170)
T ss_pred             HHHHHHHHcCCCCCc--EEEe-CCcHHHHHHHHHHhCCCCCEEEEeecccceehh--h-----HHHhcCC--EEEEeccC
Confidence            347889999644432  3343 477799999999999999999999998877652  1     1233444  56666655


Q ss_pred             CCC-CCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEE
Q 010008          224 EST-GLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVT  300 (520)
Q Consensus       224 ~~~-~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~  300 (520)
                      ..+ ...|.+.+++.....+|++++++.+++++  ..|+++|.++|+++|+++++|++|..+.........+..++|+++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~  152 (170)
T cd01494          73 DAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVT  152 (170)
T ss_pred             CCCccchhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEE
Confidence            322 22333356555544488999998777665  668899999999999999999998776654322112223799999


Q ss_pred             eccCcccCCCCceEEEee
Q 010008          301 TTTHKSLRGPRGGMIFFK  318 (520)
Q Consensus       301 ~S~hK~l~GprgG~I~~~  318 (520)
                      .|+||++.+|++|+++++
T Consensus       153 ~s~~K~~~~~~~G~l~~~  170 (170)
T cd01494         153 FSLHKNLGGEGGGVVIVK  170 (170)
T ss_pred             EEcccccCCCceEEEEeC
Confidence            999999988888999874

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.67  E-value=8.9e-14  Score=146.42  Aligned_cols=310  Identities=13%  Similarity=0.096  Sum_probs=183.2

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC----
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  180 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all----  180 (520)
                      ..|.|.+|+...+.. +..+.+  .+  ..+...+++    +++++++|.+.     .+..+||++||..++..+.    
T Consensus        54 ~~p~v~~a~~~~~~~-~~~~~~--~~--~~~~~~~l~----~~l~~~~~~~~-----~~~~~SGs~A~e~ai~~a~~~~~  119 (401)
T TIGR01885        54 CHPKIVKALTEQAQK-LTLSSR--AF--YNDVFGEFA----EYVTKLFGYDK-----VLPMNTGAEAVETAIKLARKWGY  119 (401)
T ss_pred             CCHHHHHHHHHHHHh-cccccc--cc--CCHHHHHHH----HHHHhhcCCCE-----EEEeCccHHHHHHHHHHHHHHhh
Confidence            478999998877643 322222  11  223334444    57788888642     3556899999999888641    


Q ss_pred             -----CCC-CEEEEcCCCCCccccccccccccccccccce-----E-----EEEEcccCCCCCCCCHHHHHHHhhhc--C
Q 010008          181 -----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----F-----ESMPYRLDESTGLVDYDMLEKTAILF--R  242 (520)
Q Consensus       181 -----~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~-----~-----~~v~~~~d~~~~~iD~d~le~~i~~~--~  242 (520)
                           .+| +.|+.....|.|....       .+...+..     +     ..+.++      ..|+++++++++..  +
T Consensus       120 ~~~~~~~~~~~i~~~~~~yhg~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~le~~l~~~~~~  186 (401)
T TIGR01885       120 KVKGIPENQAIIVSAKGNFHGRTLG-------AISMSTDPDSRTNFGPYVPGFKKIP------YNNLEALEEALEDHGPN  186 (401)
T ss_pred             hhcCCCCCCCEEEEECCCcCcccHH-------HHhCcCCcccccccCCCCCCceEeC------CCCHHHHHHHHHhcCCC
Confidence                 233 5677666554332100       11111110     0     011111      23789999888643  3


Q ss_pred             CcEEEEcCCCCC--CCCC----HHHHHHHHHHhCCEEEEechhhcccccccccC-C-CCC-cccEEEeccCcccCC--CC
Q 010008          243 PKLIIAGASAYP--RDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA-D-PFK-YCDVVTTTTHKSLRG--PR  311 (520)
Q Consensus       243 pklIi~~~s~~p--~~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~-~-p~~-~aDiv~~S~hK~l~G--pr  311 (520)
                      ..+|++.....+  ...+    +++|+++|+++|+++|+|++| .|+...+... . ... ..|++++|  |.+.|  ++
T Consensus       187 ~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~-~g~g~~G~~~~~~~~~~~~di~~~g--K~l~~g~~~  263 (401)
T TIGR01885       187 VCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQ-TGLGRTGKLLCVDHENVKPDIVLLG--KALSGGVYP  263 (401)
T ss_pred             EEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechh-hCCCccchhhHHhhcCCCCCEEEee--ccccCCCCC
Confidence            346666533322  2333    899999999999999999997 5654333211 0 011 35777654  99854  67


Q ss_pred             ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEec-
Q 010008          312 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVS-  390 (520)
Q Consensus       312 gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~-  390 (520)
                      .|++++++      ++.+.+.........+++... .++...+|+.+.+++   ..++...+.+++.+.|++.+..++. 
T Consensus       264 ig~v~~~~------~i~~~~~~~~~~~t~~~~p~~-~~aa~a~L~~i~~~~---l~~~~~~~~~~~~~~L~~l~~~~~~~  333 (401)
T TIGR01885       264 VSAVLADD------DVMLTIKPGEHGSTYGGNPLA-CAVAVAALEVLEEEK---LAENAEKLGEIFRDQLKKLPKPIITE  333 (401)
T ss_pred             cEEEEEcH------HHHhhccCCCCCCCCCCCHHH-HHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhccCCceeE
Confidence            78899887      676666543333334444333 333344677665433   3456666688888888886544432 


Q ss_pred             -CCCCCeeEEEEecCC--CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          391 -GGSDNHLVLVDLRPM--GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       391 -~gt~~~~~~vd~~~~--g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                       .+ ...+..+.+...  +.+..++.+.|.+.||.+.    |.     .+..+||+++.    .++++|++++.+.|.++
T Consensus       334 ~~g-~g~~~~i~~~~~~~~~~~~~l~~~l~~~Gv~v~----~~-----~~~~lRi~p~l----~~t~~~i~~~l~~l~~~  399 (401)
T TIGR01885       334 VRG-RGLLNAIVIDESKTGRTAWDLCLKLKEKGLLAK----PT-----HGNIIRLAPPL----VITEEQLDEGLEIIKKV  399 (401)
T ss_pred             Eee-cCeeEEEEeccCcchhHHHHHHHHHHhCCEEEE----ec-----CCCEEEEeCCc----cCCHHHHHHHHHHHHHH
Confidence             12 223333334322  1245667788889999984    21     25689998763    25699999999999876


Q ss_pred             H
Q 010008          468 V  468 (520)
Q Consensus       468 l  468 (520)
                      +
T Consensus       400 l  400 (401)
T TIGR01885       400 I  400 (401)
T ss_pred             h
Confidence            5

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.66  E-value=7e-14  Score=147.30  Aligned_cols=308  Identities=15%  Similarity=0.112  Sum_probs=183.5

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh---C
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI---L  180 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al---l  180 (520)
                      .-.|.|.+++...+.+....+.     ....+...+++    ++++++++.+.     ....+||++||.+++...   .
T Consensus        56 h~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~----~~l~~~~~~~~-----~~~~~sGseA~e~a~klar~~~  121 (403)
T PRK05093         56 HCHPALVKALKEQGEKLWHISN-----VFTNEPALRLA----KKLIDATFAER-----VFFANSGAEANEAAFKLARRYA  121 (403)
T ss_pred             CCCHHHHHHHHHHHHhcCcccC-----ccCCHHHHHHH----HHHHhhCCCCE-----EEEeCchHHHHHHHHHHHHHHH
Confidence            3578899988887754221111     11222223333    56777776542     244689999999888743   1


Q ss_pred             -----CCCCEEEEcCCCC-Cccccccccccccccccccce-----E-----EEEEcccCCCCCCCCHHHHHHHhhhcCCc
Q 010008          181 -----KPHDRIMGLDLPH-GGHLSHGFMTPKRRVSGTSIY-----F-----ESMPYRLDESTGLVDYDMLEKTAILFRPK  244 (520)
Q Consensus       181 -----~pGD~Vl~~~~~~-~ghls~g~~~~~~~v~~~g~~-----~-----~~v~~~~d~~~~~iD~d~le~~i~~~~pk  244 (520)
                           ...++|+..+-.+ |.++  +      .++..+..     +     ..+.++      ..|++++++.+.+ +++
T Consensus       122 ~~~~~~~~~~ii~~~~~~HG~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~-~~a  186 (403)
T PRK05093        122 CDRHGPEKTEIIAFHNSFHGRTL--F------TVSVGGQPKYSDGFGPKPADITHVP------FNDLAAVKAVIDD-HTC  186 (403)
T ss_pred             hhcCCCCCCeEEEEcCCcCCchh--h------hHhhcCChhhhhcCCCCCCCcEEeC------CCCHHHHHHHhcC-CeE
Confidence                 1235677776543 3221  0      11111100     0     011111      2388999998876 789


Q ss_pred             EEEEcCCCCCC--CC-----CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC----cccEEEeccCccc-CCCCc
Q 010008          245 LIIAGASAYPR--DF-----DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSL-RGPRG  312 (520)
Q Consensus       245 lIi~~~s~~p~--~~-----d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~----~aDiv~~S~hK~l-~Gprg  312 (520)
                      +|++. |.++.  ..     .+++|+++|++||+++|+|++|. |+...+.. .+..    ..|+.  |++|++ +|+|.
T Consensus       187 aiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~-~~~~~~~~~pdi~--s~sK~l~~G~ri  261 (403)
T PRK05093        187 AVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQT-GMGRTGDL-FAYMHYGVTPDIL--TSAKALGGGFPI  261 (403)
T ss_pred             EEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCCCccc-hhhhhcCCCCCEE--EecccccCCcce
Confidence            99888 34332  22     28899999999999999999965 66444421 1111    24554  667998 67889


Q ss_pred             eEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCC--EEe-
Q 010008          313 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGY--KLV-  389 (520)
Q Consensus       313 G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~--~v~-  389 (520)
                      |++++++      ++.+.+.........+++...+.+++ .+|+.+..+   ++.+++.++.+.+.+.|++.+.  .++ 
T Consensus       262 g~vv~~~------~i~~~l~~~~~~~t~~~~~~~~~aa~-a~L~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~  331 (403)
T PRK05093        262 GAMLTTA------EIASHFKVGTHGSTYGGNPLACAVAE-AVFDIINTP---EVLEGVKARRQRFVDGLQKINQKYGVFS  331 (403)
T ss_pred             EEEEEcH------HHHhhcCCCCCCCCCCCCHHHHHHHH-HHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHhhCCCeE
Confidence            9999988      67776654333333444444444433 456655332   3457777888889999887432  121 


Q ss_pred             -cCCCCCeeEEEEecCCC-CCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          390 -SGGSDNHLVLVDLRPMG-IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       390 -~~gt~~~~~~vd~~~~g-~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                       ..+ ...++++.+.+.. -+..++...|.+.||.+.    |+     +.+.+|++.+..    ++++|++++.+.|.++
T Consensus       332 ~~~~-~G~~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~----~~-----g~~~lRl~~~~~----~~~~~i~~~~~~l~~~  397 (403)
T PRK05093        332 EIRG-MGLLIGAELKPQYKGRARDFLNAAAEEGVMVL----VA-----GPDVLRFAPSLV----IEEADIDEGLARFEKA  397 (403)
T ss_pred             eEee-CceEEEEEecCcchhHHHHHHHHHHHCCeEEe----cC-----CCCEEEEeCCCC----CCHHHHHHHHHHHHHH
Confidence             111 1344555554321 124556677777899984    32     246899976543    4589999999999988


Q ss_pred             HH
Q 010008          468 VE  469 (520)
Q Consensus       468 l~  469 (520)
                      +.
T Consensus       398 l~  399 (403)
T PRK05093        398 VA  399 (403)
T ss_pred             HH
Confidence            75

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.66  E-value=9.9e-15  Score=137.52  Aligned_cols=279  Identities=17%  Similarity=0.173  Sum_probs=183.1

Q ss_pred             cCCCCCCCceeeecCChH-HHHHHHHHhhCCCC-CEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCC
Q 010008          152 FNLDENKWGVNVQPLSGS-PANFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV  229 (520)
Q Consensus       152 fg~~~~~~~~~V~~~sGs-~A~~~~l~all~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~i  229 (520)
                      -++.++    |+++..|+ +.+.+++++.+.|| ++|+...|+|+.+      ...  ....+  .+++.+++++ ++.+
T Consensus        82 kpLt~d----nic~GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY------~v~--A~iNd--~eVvkvpl~p-dF~l  146 (375)
T KOG0633|consen   82 KPLTSD----NICVGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMY------VVD--AAIND--AEVVKVPLNP-DFSL  146 (375)
T ss_pred             CCCCcc----ceEEecCcHHHHHHHHhheecCCccceeecCCcceeE------EEE--eecCC--ceEEEecCCC-Cccc
Confidence            456665    67778899 88899999999999 9999998877532      111  12233  3777888875 7999


Q ss_pred             CHHHHHHHhhhc-CCcEEEEcCCCCCC--CCCHHHHHHHHHHh-CCEEEEechhhcccccccc-cCCCCCccc-EEEecc
Q 010008          230 DYDMLEKTAILF-RPKLIIAGASAYPR--DFDYPRMRQIADAV-GALLMMDMAHISGLVAASV-VADPFKYCD-VVTTTT  303 (520)
Q Consensus       230 D~d~le~~i~~~-~pklIi~~~s~~p~--~~d~~~i~~ia~~~-g~~li~D~Ah~~gli~~~~-~~~p~~~aD-iv~~S~  303 (520)
                      |.|++.+.++.. ++|++++++|+||+  .+-.+.|.+|..-- |.++++|+| |..+...+. .+..-.|.. ++.-|+
T Consensus       147 nvdai~evl~~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEA-YidFsg~~S~~~lV~kYpNLivlqTl  225 (375)
T KOG0633|consen  147 NVDAIAEVLELDSKIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEA-YIDFSGVESRMKLVKKYPNLIVLQTL  225 (375)
T ss_pred             cHHHHHHHHhccccceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeee-eEeeccccccchHhHhCCceeehhhh
Confidence            999999988765 78999999999998  55555666665432 789999999 434332111 111112555 566899


Q ss_pred             Cccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 010008          304 HKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRL  381 (520)
Q Consensus       304 hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L  381 (520)
                      +|++  +|-|.|+-+++.      .+++.+++...|+..+.+.  ..+|++ |+..-.....+.+.+.+.+.+.+|.+.|
T Consensus       226 SKsfGLAGiRvG~~~~~~------~ia~iln~~KaPYNiS~~~--s~~AL~-Als~~n~kkme~~rdaiv~er~RL~keL  296 (375)
T KOG0633|consen  226 SKSFGLAGIRVGYGAFPL------SIAEILNRAKAPYNISVAG--SVAALA-ALSDSNGKKMEDVRDAIVRERERLFKEL  296 (375)
T ss_pred             hhhcCcceeEeecccccH------HHHHHHHhccCCccccchh--HHHHHH-hcCcccchHHHHHHHHHHHHHHHHHHHh
Confidence            9985  788999999988      6888888777776543321  233333 2221111223677888888899999999


Q ss_pred             HH-CCCEEecCCCCCeeEEEEecCC--CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHH
Q 010008          382 VE-LGYKLVSGGSDNHLVLVDLRPM--GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFV  458 (520)
Q Consensus       382 ~~-~G~~v~~~gt~~~~~~vd~~~~--g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~  458 (520)
                      .+ .++.-+.+|.+.+++++.+...  ++......+.+...|+.|+..   |.. +...|++||...       ++|+-.
T Consensus       297 t~v~~~~~~~gg~daNFiLi~v~~~~n~~akkly~q~at~~gVvVRfr---gse-~~c~G~lRitvG-------t~Eent  365 (375)
T KOG0633|consen  297 TEVPFLNDYPGGSDANFILIEVTGGDNGMAKKLYKQDATKMGVVVRFR---GSE-EGCKGYLRITVG-------TPEENT  365 (375)
T ss_pred             hcCccccCCCCcccccEEEEEEcCCCcHHHHHHHHHHHHhcceEEEEc---CCc-cccceeEEEEcC-------Ccccch
Confidence            88 3444345667888888877532  222233445567799999742   221 235788998542       235555


Q ss_pred             HHHHHHHH
Q 010008          459 AIADFIHE  466 (520)
Q Consensus       459 ~la~~i~~  466 (520)
                      -+.+.+++
T Consensus       366 vL~k~~K~  373 (375)
T KOG0633|consen  366 VLMKCLKQ  373 (375)
T ss_pred             HHHHHHHh
Confidence            55555544

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.66  E-value=8.6e-14  Score=146.30  Aligned_cols=310  Identities=16%  Similarity=0.122  Sum_probs=183.0

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC----
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  180 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all----  180 (520)
                      -.|.|.+|+...+.+.+..+   ..+  .++...+++    ++++++++.+.     ....+||++||.+++....    
T Consensus        52 ~~p~v~~a~~~~~~~~~~~~---~~~--~~~~~~~la----~~L~~~~~~~~-----~~f~~SGseA~e~Alk~ar~~~~  117 (397)
T TIGR03246        52 AHPELVKALIEQADKLWHIG---NGY--TNEPVLRLA----KKLVDATFADK-----VFFCNSGAEANEAALKLARRYAL  117 (397)
T ss_pred             CCHHHHHHHHHHHHhccccc---Ccc--CCHHHHHHH----HHHHhhCCCCE-----EEEeCCcHHHHHHHHHHHHHHHH
Confidence            47889988888776432111   111  123233333    67777777542     2446899999999888651    


Q ss_pred             ---CC-CCEEEEcCCCC-Cccccccccccccccccccce-----E-----EEEEcccCCCCCCCCHHHHHHHhhhcCCcE
Q 010008          181 ---KP-HDRIMGLDLPH-GGHLSHGFMTPKRRVSGTSIY-----F-----ESMPYRLDESTGLVDYDMLEKTAILFRPKL  245 (520)
Q Consensus       181 ---~p-GD~Vl~~~~~~-~ghls~g~~~~~~~v~~~g~~-----~-----~~v~~~~d~~~~~iD~d~le~~i~~~~pkl  245 (520)
                         .+ .++|+..+-.| |.+.  +      .+...+..     +     .+..++      ..|++++++++.+ ++++
T Consensus       118 ~~~~~~r~~ii~~~~~yHG~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~-~~aa  182 (397)
T TIGR03246       118 DKHGADKSEIVAFKNSFHGRTL--F------TVSVGGQPKYSQGFAPLPGGIKHAP------YNDLAAAKALISD-KTCA  182 (397)
T ss_pred             hcCCCCCCEEEEECCCcCCccH--H------HHHhcCCcccccCCCCCCCceEEeC------CCCHHHHHHHhcc-CeEE
Confidence               12 35677776543 3221  0      11111110     0     011111      2388999999876 7888


Q ss_pred             EEEcCCCCC-C-----CCCHHHHHHHHHHhCCEEEEechhhcccccccccCC--CCC-cccEEEeccCccc-CCCCceEE
Q 010008          246 IIAGASAYP-R-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK-YCDVVTTTTHKSL-RGPRGGMI  315 (520)
Q Consensus       246 Ii~~~s~~p-~-----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~--p~~-~aDiv~~S~hK~l-~GprgG~I  315 (520)
                      |++...+.. +     ...+++|+++|++||+++|+|++| .|+...|....  .+. ..|++  ++.|.+ .|.+.|++
T Consensus       183 vi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~-tG~Gr~G~~~a~~~~gv~pDi~--t~~K~lggG~pigav  259 (397)
T TIGR03246       183 VIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQ-TGVGRTGELYAYMHYGVTPDIL--TSAKALGGGFPIGAM  259 (397)
T ss_pred             EEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh-hcCCccccchhhhhcCCCCCEE--EeehhhhCCcceeEE
Confidence            988743322 2     234899999999999999999998 66633332110  111 35777  456998 66778999


Q ss_pred             EeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCC--CEEec--C
Q 010008          316 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG--YKLVS--G  391 (520)
Q Consensus       316 ~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G--~~v~~--~  391 (520)
                      ++++      ++.+.+.......+.++.... .++..++++.+..   .+..+++.++.+++.+.|++.+  +.++.  .
T Consensus       260 ~~~~------~i~~~~~~~~~~~t~~~~p~~-~aaa~a~l~~~~~---~~l~~~~~~~~~~l~~~L~~l~~~~~~~~~vr  329 (397)
T TIGR03246       260 LTTT------EIAAHLKVGTHGTTYGGNPLA-CAVAGKVLDLVNT---PELLAGVKQRHDLFVDGLEKINARYNVFSEIR  329 (397)
T ss_pred             EEcH------HHHHhccCCCcCCCCCCCHHH-HHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEeee
Confidence            9987      676666543222233333333 3333345665533   3456777788888888887743  22222  1


Q ss_pred             CCCCeeEEEEecCC-CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          392 GSDNHLVLVDLRPM-GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       392 gt~~~~~~vd~~~~-g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      + ...++.+.+.+. ......+.+.|.+.||.+..   +      .++.+|+..+..    ++++|++++.+.+.+++..
T Consensus       330 g-~G~~~~i~~~~~~~~~~~~~~~~l~~~Gv~~~~---~------g~~~lR~~p~~~----~t~~~i~~~~~~l~~~l~~  395 (397)
T TIGR03246       330 G-KGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALI---A------GPNVVRFAPSLV----ISDDDIDEGLARFERAIEQ  395 (397)
T ss_pred             c-CceEEEEEEcCchhhHHHHHHHHHHHCCeEEee---c------CCCEEEEeCCCC----CCHHHHHHHHHHHHHHHHH
Confidence            1 122333333221 11245677788889999842   1      236899975533    5699999999999888753

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.65  E-value=1.6e-14  Score=152.27  Aligned_cols=292  Identities=19%  Similarity=0.246  Sum_probs=194.2

Q ss_pred             HHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEccc
Q 010008          144 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL  222 (520)
Q Consensus       144 a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~  222 (520)
                      +++.+++.||+++..+     +++|| .||.+++++++.|||.||+...+|-++. ||       +-++|.  .++++..
T Consensus        75 Aqe~aA~~fgAd~tyF-----vvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~-~g-------lilaGa--~Pvyl~p  139 (557)
T COG1982          75 AQELAARVFGADHTYF-----VVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIH-HG-------LILAGA--TPVYLEP  139 (557)
T ss_pred             HHHHHHHHhCCCceEE-----EECCccHHHHHHHHhhcCCCCEEEecCCccHHHH-HH-------HHHcCC--ceEEecC
Confidence            4578899999998632     25777 8999999999999999999998886653 33       334555  5554322


Q ss_pred             --CCC---CCCCCHHHHHHHhhhcC-C-cEEEEcCCCCCC-CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCC-C
Q 010008          223 --DES---TGLVDYDMLEKTAILFR-P-KLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADP-F  293 (520)
Q Consensus       223 --d~~---~~~iD~d~le~~i~~~~-p-klIi~~~s~~p~-~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p-~  293 (520)
                        |+.   -+.|+.+.+++.+.+++ - |++++..++|-+ ..|.++|.+.++..++|+.+|.+|-+.....+..+.+ .
T Consensus       140 ~~np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~  219 (557)
T COG1982         140 SRNPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESAL  219 (557)
T ss_pred             CCCccccccCCCCHHHHHHHHHhChhhheeEEEecCccceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhh
Confidence              221   15789999988776632 3 678888887655 8899999999999999999999987665544444432 2


Q ss_pred             -CcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHH----H
Q 010008          294 -KYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY----Q  367 (520)
Q Consensus       294 -~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~----~  367 (520)
                       .++|+++-|+||.+++..- .+|..++...   -..++++.+..-...++|+...+|++.+|-......+ ++.    .
T Consensus       220 ~~~~~~~tqS~HK~l~alSQaS~iHv~~~~~---~~~~r~nea~~~h~STSPsY~l~ASlD~Ar~~~~~~G-~~l~~~~~  295 (557)
T COG1982         220 NGGADFVTQSTHKLLAALSQASMIHVKDGRA---VNHERFNEALMMHQSTSPSYPLMASLDVARMQEGNAG-RELWQEVI  295 (557)
T ss_pred             hcCceEEEechhhhhhhhhhhHHHhhCCCcc---CCHHHHHHHHHHHccCCchHHHHHHHHHHHHhhhhhh-HHHHHHHH
Confidence             2789999999999977554 6777765200   1234455443334467889999999987544333222 333    4


Q ss_pred             HHHHHHHHHHHHHHHH-CCCEEecCCC--------------------CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCC
Q 010008          368 NKVVSNCRALASRLVE-LGYKLVSGGS--------------------DNHLVLVDLRPMGIDGARVEKILDMASITLNKN  426 (520)
Q Consensus       368 ~~i~~na~~l~~~L~~-~G~~v~~~gt--------------------~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~  426 (520)
                      +...+.++.+.+...+ .+++++.++.                    |.-=+.+.....|+++..+.+.|++.||...+.
T Consensus       296 ~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~~Gipg~~v~~~L~e~gii~e~~  375 (557)
T COG1982         296 DEAIDFRKALRRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPEFGIPGAIVAKYLREHGIIPEET  375 (557)
T ss_pred             HHHHHHHHHHHHHHHhcCCeeeccccccCCcccccccccccccceeccccEEEEecCCCCCcHHHHHHHHHHcCCeeeec
Confidence            5555666666666655 3566665431                    111123334467999999999999999998653


Q ss_pred             CCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHH
Q 010008          427 SVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  465 (520)
Q Consensus       427 ~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~  465 (520)
                      .   +.+    --+=++ +..   |-...+++.+.++.+
T Consensus       376 ~---d~~----~lll~~-~~~---gk~~~lv~~L~~f~r  403 (557)
T COG1982         376 G---DYS----NLLLFS-PGI---GKWQTLVDRLLEFKR  403 (557)
T ss_pred             C---Cce----eeEEee-ecc---chHHHHHHHHHHHHH
Confidence            1   110    011122 111   455678888888887

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.64  E-value=1.1e-13  Score=157.07  Aligned_cols=308  Identities=14%  Similarity=0.119  Sum_probs=190.5

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcc--h-hHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhh
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGN--E-YIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAI  179 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~--~-~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~al  179 (520)
                      ++|+.|++++.+... .|+. |.+   |...  + ..+.+. ..+..+++++|++.+    |+..+.++ .+..++++++
T Consensus       116 ~~P~~v~~~i~~~~~-~~Ta-ytP---YqaEisQG~lqal~-~~Qt~ia~LtG~~~a----naSL~d~aTAaaea~~~a~  185 (993)
T PLN02414        116 HVPPVILRNILENPG-WYTQ-YTP---YQAEIAQGRLESLL-NYQTMITDLTGLPMS----NASLLDEGTAAAEAMAMCN  185 (993)
T ss_pred             cCCHHHHHHHHhChH-HHhh-cCC---CchHHHHHHHHHHH-HHHHHHHHHhCCChh----hEeecCChHHHHHHHHHHH
Confidence            478888888876542 1221 211   2211  1 122233 356789999999985    44445554 6666676676


Q ss_pred             -CCCC--CEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC-
Q 010008          180 -LKPH--DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-  255 (520)
Q Consensus       180 -l~pG--D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~-  255 (520)
                       +++|  |+|++.+..|++...... +   .....|.  +++.++++.    .|      ...+ ..-.+++.+|++.+ 
T Consensus       186 ~~~~g~~~~VlVs~~~hP~~~~v~~-t---~a~~~Gi--eV~~v~~~~----~~------~~~~-~v~~vlvq~P~~~G~  248 (993)
T PLN02414        186 NILKGKKKKFLIASNCHPQTIDVCQ-T---RADGLGL--EVVVADEKD----FD------YSSG-DVCGVLVQYPATDGE  248 (993)
T ss_pred             hcccCCCCEEEEcCccCHhHHHHHH-H---hhhhcCC--EEEEecchh----hc------cccC-ceEEEEEecCCCCeE
Confidence             5655  789999988876543211 0   1122343  555544431    11      0111 22234455665444 


Q ss_pred             CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEEEeccCccc-----CCCCceEEEeeCCCcchhhHHH
Q 010008          256 DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSL-----RGPRGGMIFFKKDPVLGVELES  329 (520)
Q Consensus       256 ~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S~hK~l-----~GprgG~I~~~~~~~~~~~l~~  329 (520)
                      ..|+++|.++||++|+++++ +++..++....   .|-+ +|||++++.|||+     +||+.|+++++++      +.+
T Consensus       249 v~dv~~I~~~ah~~GaL~iV-aad~lal~~l~---~pge~GADi~vgsgqKwg~P~G~GGP~aGflavr~~------~~r  318 (993)
T PLN02414        249 VLDYAEFVKNAHANGVKVVM-ATDLLALTMLK---PPGEWGADIVVGSAQRFGVPMGYGGPHAAFLATSQE------YKR  318 (993)
T ss_pred             EcCHHHHHHHHHHcCCEEEE-EECHHHhcCCC---CHhhccCcEEEECCCccccCCCCCCCCeeEEEECHH------HHh
Confidence            78999999999999999999 77766655321   2223 8999999999997     7788899999883      322


Q ss_pred             hhcc---------cCCCC--------------CCCCChHHHHHHHHHHH-----HHhcCchhHHHHHHHHHHHHHHHHHH
Q 010008          330 AINN---------AVFPG--------------LQGGPHNHTIGGLAVCL-----KHAQSPEFKVYQNKVVSNCRALASRL  381 (520)
Q Consensus       330 ~i~~---------~~~p~--------------~~g~p~~~~iaala~al-----~~~~~~~~~~~~~~i~~na~~l~~~L  381 (520)
                      .+-.         .-.++              -.++.+.....++.+++     ..+...+.++..+++...+.++++.|
T Consensus       319 ~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L  398 (993)
T PLN02414        319 LMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGL  398 (993)
T ss_pred             hCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            2210         00000              03444553322332222     23344567888899999999999999


Q ss_pred             HHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHH
Q 010008          382 VELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA  461 (520)
Q Consensus       382 ~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la  461 (520)
                      .+.|+++..+ .....+.+.+.    +..++.+.|.+.||.++..         ..+.+|++....+|    ++|++.++
T Consensus       399 ~~~G~~~~~~-~~f~~vt~~~~----~~~~v~~~L~~~gI~l~~~---------~~~~lrvs~~e~~T----~edId~L~  460 (993)
T PLN02414        399 KKLGFQVQSL-PFFDTVKVKCS----DADAIADAAAKVGINLRVV---------DANTVTVSFDETTT----LEDVDKLF  460 (993)
T ss_pred             hhcCCccCCC-CCcCeEEEecC----CHHHHHHHHHHCCCeeEEe---------cCCeEEEEeeccCC----HHHHHHHH
Confidence            8889888654 22233444442    3577889999999987542         13469999998876    89999999


Q ss_pred             HHHHH
Q 010008          462 DFIHE  466 (520)
Q Consensus       462 ~~i~~  466 (520)
                      +.+..
T Consensus       461 ~~l~~  465 (993)
T PLN02414        461 KVFAG  465 (993)
T ss_pred             HHHcc
Confidence            99963

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.61  E-value=3.5e-13  Score=138.10  Aligned_cols=336  Identities=14%  Similarity=0.089  Sum_probs=208.2

Q ss_pred             hccceEecCCCCChHHHHHHHhhhhhccCCCCCC-CCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHH
Q 010008           93 FKSLELIASENFTSRAVMEAVGSCLTNKYSEGLP-GKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA  171 (520)
Q Consensus        93 ~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p-~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A  171 (520)
                      .+.+++.|++..+|+.|++++...+.+....|.- -...+.+.++.+.++ .+.+.++++|+++.+ +.+-+...+||.+
T Consensus         3 ~~~~nF~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~-~~~~~Lr~Ll~~P~~-y~Vlfl~GggT~~   80 (364)
T PRK12462          3 RNQLNFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLA-QAEADLRDLLGIPDE-YGVVFLQGGSSLQ   80 (364)
T ss_pred             cccceecCCCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHH-HHHHHHHHHhCCCCC-CeEEEEeccHHHH
Confidence            3567899999999999999999888765433321 011123455555555 577899999999533 3355556677799


Q ss_pred             HHHHHHhhCCCCCEEE-EcCCCCCccccccccccccccccccceEEEEEcccC-CCCCCCCHHHHHHHhhhcCCcEEEEc
Q 010008          172 NFEVYTAILKPHDRIM-GLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTGLVDYDMLEKTAILFRPKLIIAG  249 (520)
Q Consensus       172 ~~~~l~all~pGD~Vl-~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d-~~~~~iD~d~le~~i~~~~pklIi~~  249 (520)
                      +.++.+.|+++||+++ ...   .|+++..+.-   .....| ..+.+...-. ..+..+++++++  +.+ +.+.|.++
T Consensus        81 ~ea~~~Nll~~g~~~~~~~~---tG~fg~r~~~---ea~~~g-~v~~~~~~~~~~~~~~p~~~~~~--~~~-d~~~v~~t  150 (364)
T PRK12462         81 FSMIPMNFSRPGAAAPEYVT---TGYWSRKAIG---EASRVA-AMRVVWDGAASGYRTLPSLAELD--WDA-RAPFRHYV  150 (364)
T ss_pred             HHHHHHHcCCCCCcEEEEEe---CCHHHHHHHH---HHHhcC-CceEecCcCCCCCCcCCCHHHhc--cCC-CCcEEEEc
Confidence            9999999999999765 443   3444433211   111123 1232221000 012356666651  222 45777666


Q ss_pred             CCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhh
Q 010008          250 ASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVE  326 (520)
Q Consensus       250 ~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~  326 (520)
                      .....+  ..+     ++.+.+++++++|++-..+..     +.++..-|++.++.+|.|. |.| ++++.++      +
T Consensus       151 ~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s~-----pid~~~~dvi~agsQKnlg-P~Gltvvivs~------~  213 (364)
T PRK12462        151 SNETVEGLQFP-----DAAGLPDSPLIADMSSDFMSR-----PFDVEAYGMVYAHAQKNLG-PAGVTVAIIRR------A  213 (364)
T ss_pred             cCCCCceEecC-----cccccCCCeEEEEcCchhhCC-----CCChHHccEEEeeccccCC-CCceEEEEECH------H
Confidence            443332  333     233346999999996443322     2233334999999999995 888 8888887      3


Q ss_pred             HHHhhcccCC-----------CCCCCCChHHHHHHHHHHHHHhcCc--hhHHHHHHHHHHHHHHHHHHHHC-CCEEec--
Q 010008          327 LESAINNAVF-----------PGLQGGPHNHTIGGLAVCLKHAQSP--EFKVYQNKVVSNCRALASRLVEL-GYKLVS--  390 (520)
Q Consensus       327 l~~~i~~~~~-----------p~~~g~p~~~~iaala~al~~~~~~--~~~~~~~~i~~na~~l~~~L~~~-G~~v~~--  390 (520)
                      ..++......           ....-+|....|.++..+|+.+.++  +.+...++..+.++.+++.+.+. |+....  
T Consensus       214 al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~  293 (364)
T PRK12462        214 LLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAH  293 (364)
T ss_pred             HHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC
Confidence            3333322110           0123488999999999999988766  77899999999999999999884 343322  


Q ss_pred             CCCCCeeE-EEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          391 GGSDNHLV-LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       391 ~gt~~~~~-~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +...+.+. .+.+....+ .+++.+.+++.|+.-    +-|+.+   -+|+|+|+--    .++.++++.+++++++.-+
T Consensus       294 ~~~RS~mnv~f~~~~~~l-~~~f~~~a~~~gl~~----lkGhr~---vgg~Ras~yn----a~~~e~v~~L~~fm~~f~~  361 (364)
T PRK12462        294 RAARSTMNVAFRFRQPRL-DTLFKEQSTEAGFCG----LSGHRS---IGGIRASLYN----AVSEQAVSRLCAFLKDFAI  361 (364)
T ss_pred             hhhcCcceEEEEcCCHHH-HHHHHHHHHHCCCcc----ccCCcc---cCceEEEcCC----CCCHHHHHHHHHHHHHHHH
Confidence            21122322 233332221 244556677899887    334432   5789998732    4668999999999987543

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.61  E-value=2.6e-13  Score=143.05  Aligned_cols=315  Identities=19%  Similarity=0.146  Sum_probs=186.3

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC----
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  180 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all----  180 (520)
                      -.|.|.+|+...+.+-+..   +..|+  ++...+    ..++++++++.+.     .+..+||++||.+++....    
T Consensus        56 ~~p~v~~A~~~~~~~~~~~---~~~~~--~~~~~~----la~~l~~~~~~~~-----v~~~~sGseA~e~Alk~ar~~~~  121 (406)
T PRK12381         56 AHPALREALNEQASKFWHT---GNGYT--NEPVLR----LAKKLIDATFADR-----VFFCNSGAEANEAALKLARKYAH  121 (406)
T ss_pred             CCHHHHHHHHHHHhhcccc---cCccC--CHHHHH----HHHHHHhhCCCCe-----EEEcCCcHHHHHHHHHHHHHHHh
Confidence            4788888888877542211   11111  222222    2367777776542     2456899999998887641    


Q ss_pred             ----CCCCEEEEcCCCCCccccccccccccccccccce-EEEEEcccCCC---CCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 010008          181 ----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDES---TGLVDYDMLEKTAILFRPKLIIAGASA  252 (520)
Q Consensus       181 ----~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~-~~~v~~~~d~~---~~~iD~d~le~~i~~~~pklIi~~~s~  252 (520)
                          ....+|+..+..|.|... +      .+.+.+.. +..-+-++.+.   ....|++++++.+.+ ++++|++. |.
T Consensus       122 ~~~~~~r~~ii~~~~~yHG~t~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~aaviiE-Pv  192 (406)
T PRK12381        122 DRYGSHKSGIVAFKNAFHGRTL-F------TVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDD-QTCAVIVE-PI  192 (406)
T ss_pred             hcCCCCCCeEEEECCCcCCcch-h------HHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhccC-CeeEEEEe-CC
Confidence                245788888876533311 1      11122210 00000000000   013588999999876 78888886 44


Q ss_pred             CCC-------CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC----cccEEEeccCccc-CCCCceEEEeeCC
Q 010008          253 YPR-------DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSL-RGPRGGMIFFKKD  320 (520)
Q Consensus       253 ~p~-------~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~----~aDiv~~S~hK~l-~GprgG~I~~~~~  320 (520)
                      ++.       ...+++|+++|++||+++|+|++| .|+...+.. ..+.    ..|++  |+.|.+ .|++.|++++++ 
T Consensus       193 ~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~-tG~gr~G~~-~~~~~~~v~pDi~--t~sK~l~gG~~ig~~~~~~-  267 (406)
T PRK12381        193 QGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQ-TGVGRTGEL-YAYMHYGVTPDVL--TTAKALGGGFPIGAMLTTE-  267 (406)
T ss_pred             cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchh-hCCCCCcch-hhhHhhCCCCCEE--EehhhhhCCCceEEEEEcH-
Confidence            432       235889999999999999999997 565433321 1111    24664  667998 677889999987 


Q ss_pred             CcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCC--CEEec--CCCCCe
Q 010008          321 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG--YKLVS--GGSDNH  396 (520)
Q Consensus       321 ~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G--~~v~~--~gt~~~  396 (520)
                           ++.+.+.........+++.....+ ...+|+.+..+   +..+++.++.+++.+.|.+.+  +.++.  .+ ...
T Consensus       268 -----~~~~~~~~~~~~~t~~~~pl~~aa-a~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg-~Gl  337 (406)
T PRK12381        268 -----KCASVMTVGTHGTTYGGNPLASAV-AGKVLELINTP---EMLNGVKQRHDWFVERLNTINARYGLFSEIRG-LGL  337 (406)
T ss_pred             -----HHHhhcCCCCCCCCCCCCHHHHHH-HHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHhhCCCEEEEec-CeE
Confidence                 677766543333333443333333 33456655432   356777777888888887743  32222  11 123


Q ss_pred             eEEEEecCC-CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          397 LVLVDLRPM-GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       397 ~~~vd~~~~-g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      ++++.+... .-....+.+.|.+.||.+..    .     .+..||++.+..    ++++|++++.+.|.+++..
T Consensus       338 ~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~----~-----g~~~lRl~p~~~----~t~~~i~~~~~~l~~~l~~  399 (406)
T PRK12381        338 LIGCVLNAEYAGKAKQISQEAAKAGVMVLI----A-----GPNVVRFAPALN----ISEEEITTGLDRFARACER  399 (406)
T ss_pred             EEEEEecCchhhHHHHHHHHHHHCCcEEee----C-----CCCEEEEeCCcc----CCHHHHHHHHHHHHHHHHH
Confidence            445555321 01235677888899999842    1     235899987643    4589999999999998864

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.60  E-value=2.3e-13  Score=135.22  Aligned_cols=247  Identities=18%  Similarity=0.265  Sum_probs=140.0

Q ss_pred             hhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCC-CC---------Ccccccccccc
Q 010008          135 EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDL-PH---------GGHLSHGFMTP  204 (520)
Q Consensus       135 ~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~-~~---------~ghls~g~~~~  204 (520)
                      .-.|.+|    +-+++.||++.+  .|.-|..|||+|+..++.++++|||+++...- +|         .++ ..|    
T Consensus        54 ~GRd~le----~iyA~vfgaE~A--LVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~-~~G----  122 (403)
T PF06838_consen   54 IGRDKLE----RIYADVFGAEDA--LVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGN-GPG----  122 (403)
T ss_dssp             HHHHHHH----HHHHHHCT-SEE--EEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSS-SSS----
T ss_pred             ccHHHHH----HHHHHHhCchhh--hhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCC-CCC----
Confidence            4467777    568899999964  25667789999999999999999999997542 22         111 111    


Q ss_pred             ccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcC-CCCCC--CCC---HHHHHHHHHHh--CCEEEEe
Q 010008          205 KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA-SAYPR--DFD---YPRMRQIADAV--GALLMMD  276 (520)
Q Consensus       205 ~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~-s~~p~--~~d---~~~i~~ia~~~--g~~li~D  276 (520)
                        .+.-.|..|+  .+++. +++.+|+|.+++.+++ ++|+|.+-- -.|..  .+.   ++++.++.|+.  ++++++|
T Consensus       123 --SL~e~Gi~Y~--~v~L~-~dg~~D~~~i~~~~~~-~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVD  196 (403)
T PF06838_consen  123 --SLKEFGIKYR--EVPLT-EDGTIDWEAIKKALKP-NTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVD  196 (403)
T ss_dssp             --STGGGT-EEE--E--B--TTSSB-HHHHHHHHHT-TEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE
T ss_pred             --ChHHhCceeE--EEeec-CCCCcCHHHHHHhhcc-CceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Confidence              1222355444  44455 4689999999999997 899999873 34543  334   44555555554  7999999


Q ss_pred             chhhcccccccccCCCCC-cccEEEeccCcccCC---CCceEEEeeCCCcchhhHHHhh-cccCCCCCC--CCChHHHHH
Q 010008          277 MAHISGLVAASVVADPFK-YCDVVTTTTHKSLRG---PRGGMIFFKKDPVLGVELESAI-NNAVFPGLQ--GGPHNHTIG  349 (520)
Q Consensus       277 ~Ah~~gli~~~~~~~p~~-~aDiv~~S~hK~l~G---prgG~I~~~~~~~~~~~l~~~i-~~~~~p~~~--g~p~~~~ia  349 (520)
                      .++ -.++-   ...|.. ++|++.+|+=|...|   |-||+|++++      ++.++. .+..-||+.  .|+.....-
T Consensus       197 NCY-GEFvE---~~EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~------~lVe~~a~RLTaPGiG~e~G~t~~~~R  266 (403)
T PF06838_consen  197 NCY-GEFVE---TQEPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRK------DLVERAAYRLTAPGIGKEVGATLGTNR  266 (403)
T ss_dssp             -TT-TTTTS---SS-GGGGT-SEEEEETTSGGGTTT-SS-EEEEESH------HHHHHHHHHHS-TTTGGGSS--TTTHH
T ss_pred             CCc-ceecc---ccCccccchhheeccceeCCCCCccCcCCEEechH------HHHHHHHhhhcCCccccccccCcchHH
Confidence            983 33331   224444 899999999999855   7889999998      777655 344556651  111111111


Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCC---eeEEEEecCCCCCHHHHHHHHh
Q 010008          350 GLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDN---HLVLVDLRPMGIDGARVEKILD  417 (520)
Q Consensus       350 ala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~---~~~~vd~~~~g~~~~~~~~~L~  417 (520)
                      .+...|=.  .   ...+.+.++-+...+..+++.|+++.+...+.   -+..+.+.    +.+.+..+|+
T Consensus       267 ~~~QGlFl--A---P~vV~eAlKgaif~A~~fe~lG~~v~P~~~~~R~DiIQai~l~----~~e~l~~FC~  328 (403)
T PF06838_consen  267 LMFQGLFL--A---PHVVGEALKGAIFAAALFEKLGFEVSPKPDDPRSDIIQAIELG----SPEKLIAFCQ  328 (403)
T ss_dssp             HHHHHHHH--H---HHHHHHHHHHHHHHHHHHHHTT-EEES-TTS--SSS-EEEE-S----SHHHHHHHHH
T ss_pred             HHHhHHhh--c---hHHHHHHHHHHHHHHHHHHHcCCcCCCCCCCCCCceEEEEECC----CHHHHHHHHH
Confidence            11111111  0   23455556666667777888999987643222   12344443    5677777775

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.59  E-value=3.6e-13  Score=139.89  Aligned_cols=244  Identities=20%  Similarity=0.175  Sum_probs=156.1

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCC----ceeeecCChHHHHHHHHHhhCC--------C-----CCEEEEcCCCCCc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKW----GVNVQPLSGSPANFEVYTAILK--------P-----HDRIMGLDLPHGG  195 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~----~~~V~~~sGs~A~~~~l~all~--------p-----GD~Vl~~~~~~~g  195 (520)
                      ..+...++|..+.+++++++|.+.+..    ...+..++||++|+.++.+.-+        .     +..++..+.  .+
T Consensus        73 ~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~--~a  150 (373)
T PF00282_consen   73 ASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSE--QA  150 (373)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEET--TS
T ss_pred             cccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccc--cc
Confidence            456788999999999999999983211    1345556677999877755411        1     233444332  23


Q ss_pred             cccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc--C---CcEEEEc--CCCCCCCCCHHHHHHHHHH
Q 010008          196 HLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--R---PKLIIAG--ASAYPRDFDYPRMRQIADA  268 (520)
Q Consensus       196 hls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~--~---pklIi~~--~s~~p~~~d~~~i~~ia~~  268 (520)
                      |++-     .+...+.|..  ++.+++| +++.+|+++|++++.+.  +   |-+|+++  .+..+...|+++|++||++
T Consensus       151 H~S~-----~Kaa~~lGlg--~~~I~~~-~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~  222 (373)
T PF00282_consen  151 HYSI-----EKAARILGLG--VRKIPTD-EDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEK  222 (373)
T ss_dssp             -THH-----HHHHHHTTSE--EEEE-BB-TTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHH
T ss_pred             ccHH-----HHhcceeeeE--EEEecCC-cchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccc
Confidence            3322     2456777875  5566677 47899999999987653  2   3244444  3334448899999999999


Q ss_pred             hCCEEEEechhhccccccc-ccC--CCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhc-cc---------
Q 010008          269 VGALLMMDMAHISGLVAAS-VVA--DPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAIN-NA---------  334 (520)
Q Consensus       269 ~g~~li~D~Ah~~gli~~~-~~~--~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~-~~---------  334 (520)
                      +|+|+++|+|+........ ..+  ..++.+|-++.++|||+..|-+ |++++++..    .+...+. ..         
T Consensus       223 ~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~----~l~~~~~~~~~Yl~~~~~~  298 (373)
T PF00282_consen  223 YNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKS----DLRDAFSINADYLGNDDRE  298 (373)
T ss_dssp             CT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGG----GHHGGGEEEETCTT-S-SS
T ss_pred             cceeeeecccccccccccccccccccccccccccccchhhhhcCCccceeEEeeccc----chHHHhccChhhhcccccc
Confidence            9999999998543222222 111  2234799999999999988877 899888851    1222110 00         


Q ss_pred             -------CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecC
Q 010008          335 -------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSG  391 (520)
Q Consensus       335 -------~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~  391 (520)
                             ...+++++-. .....+...++.....+|.++.++..+.++++.+.|.+. +++++.+
T Consensus       299 ~~~~~~~~~~tl~~SR~-~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~  362 (373)
T PF00282_consen  299 SDESYDYGDYTLQGSRR-FRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNE  362 (373)
T ss_dssp             S-GGGCEEEGSSSSSGH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESST
T ss_pred             ccccccccccccccccc-chHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence                   0122355542 233455667777767789999999999999999999884 6888764

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.59  E-value=1.1e-15  Score=152.79  Aligned_cols=253  Identities=20%  Similarity=0.229  Sum_probs=162.4

Q ss_pred             cCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh
Q 010008          100 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI  179 (520)
Q Consensus       100 asen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al  179 (520)
                      .|+| ..|+++++|....     .|..   -|++.++..++|    ++++++||.+..     +.+.||+.||..+++++
T Consensus         3 ~SD~-~~~~m~~a~~~a~-----~gd~---~Yg~D~~~~~l~----~~i~~l~g~e~a-----~f~~sGT~An~~al~~~   64 (290)
T PF01212_consen    3 RSDT-PTPAMLEAMAAAN-----VGDD---AYGEDPTTARLE----ERIAELFGKEAA-----LFVPSGTMANQLALRAH   64 (290)
T ss_dssp             S-SS-S-HHEEHHHHHTT-----SB-C---CTTSSHHHHHHH----HHHHHHHTSSEE-----EEESSHHHHHHHHHHHH
T ss_pred             CccC-CCHHHHHHHHccc-----cCCc---ccCCChhHHHHH----HHHHHHcCCCEE-----EEeCCCChHHHHHHHHH
Confidence            3667 7799999995432     1222   277888888888    678899999863     45689999999999999


Q ss_pred             CCCCCEEEEcCCCCCcccccccccccccc-ccccceEEEEEcccCCCCCCCCHHHHHHHhhh-----cCCcEEEEcCCCC
Q 010008          180 LKPHDRIMGLDLPHGGHLSHGFMTPKRRV-SGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-----FRPKLIIAGASAY  253 (520)
Q Consensus       180 l~pGD~Vl~~~~~~~ghls~g~~~~~~~v-~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~-----~~pklIi~~~s~~  253 (520)
                      ++|++.|++.+..|   +   +......+ .+.|.  ++++++-+ +++.+|+++|++.+..     .+|++|.+..+++
T Consensus        65 ~~~~~~vi~~~~aH---i---~~~E~ga~~~~~G~--~~~~l~~~-~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~  135 (290)
T PF01212_consen   65 LRPGESVICADTAH---I---HFDETGAIEELSGA--KLIPLPSD-DDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTE  135 (290)
T ss_dssp             HHTTEEEEEETTEH---H---HHSSTTHHHHHTTC--EEEEEBEC-TGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBT
T ss_pred             HhcCCceeccccce---e---eeeccchhhHhcCc--EEEECCCc-ccCCCCHHHHHHHhhhccccCCCccEEEEEecCc
Confidence            99999999987633   2   11111122 34565  66665543 2389999999999987     3578999987776


Q ss_pred             ---CCCC---CHHHHHHHHHHhCCEEEEechhhcccc-cccccCC-CCCcccEEEeccCcccCCCCceEEEeeCCCcchh
Q 010008          254 ---PRDF---DYPRMRQIADAVGALLMMDMAHISGLV-AASVVAD-PFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGV  325 (520)
Q Consensus       254 ---p~~~---d~~~i~~ia~~~g~~li~D~Ah~~gli-~~~~~~~-p~~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~  325 (520)
                         +++.   ++++|+++|+++|+.|+.|+|-.+... ..+.... ...++|++++|++|.+..|-|+++++++      
T Consensus       136 ~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g~~~Gavl~~~~------  209 (290)
T PF01212_consen  136 LAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIAAGADSVSFGGTKNGGAPGGAVLAGNK------  209 (290)
T ss_dssp             TTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHHTTSSEEEEETTSTT-SSSEEEEEESH------
T ss_pred             CCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHhhhCCEEEEEEEcccccccceEEEech------
Confidence               3455   466778889999999999998543322 1111111 1137999999999999889899999998      


Q ss_pred             hHHHh-hcc-cCCCC-C-CCCChHHHHHH----HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecC
Q 010008          326 ELESA-INN-AVFPG-L-QGGPHNHTIGG----LAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG  391 (520)
Q Consensus       326 ~l~~~-i~~-~~~p~-~-~g~p~~~~iaa----la~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~  391 (520)
                      ++.++ ... ..+.+ + +.+    .+++    ...++...  +.+.....+..++++.|++.|...|+.+..+
T Consensus       210 ~~i~~~~~~~k~~gg~~~~~G----~~~a~~~~~~~~l~~l--~~~~~~~~~~~~~A~~La~~l~~~~~~~~~~  277 (290)
T PF01212_consen  210 EFIAKARRQRKRLGGGMRQAG----VLAAAELYQFAALRAL--ELWLERARHANAMAKRLAAGLEALGGVLPRP  277 (290)
T ss_dssp             HHHHHHHHHHHHHTHHHHHTT----HHHHHHHHHHHHHCHE--ECSHHHHHCHHHHHHCHHHCHHEECEEEETT
T ss_pred             HHHHHHHHHHHHhccCeeecc----eeeeechhhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence            53322 111 01110 0 111    2222    01222222  2235566777888999999998888776554

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.59  E-value=1.7e-12  Score=137.64  Aligned_cols=324  Identities=16%  Similarity=0.097  Sum_probs=178.4

Q ss_pred             ccceEecCC-----CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh
Q 010008           94 KSLELIASE-----NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG  168 (520)
Q Consensus        94 ~~i~Liase-----n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG  168 (520)
                      ..|++..+-     ...+|.|.+|+...+.+..       .|+..++...+    .++++++.+... +.   .+..+||
T Consensus        49 ~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~-------~~~~~~~~~~~----lae~l~~~~~~~-~~---v~~~~sG  113 (423)
T TIGR00713        49 EYIDYVLSWGPLILGHAHPRVVEAVKEALERGT-------SYGAPTEAEIL----LAKEIISRVPSV-EM---VRFVNSG  113 (423)
T ss_pred             EEEEccccccccccCCCCHHHHHHHHHHHHhCC-------cCCCCCHHHHH----HHHHHHHhCCcc-cE---EEEeCCH
Confidence            346665432     2568999999988876432       12212222222    335666766543 22   2346788


Q ss_pred             HHHHHHHHHhh--CCCCCEEEEcCCCCCccccccccccccccccccce---------------EEEEEcccCCCCCCCCH
Q 010008          169 SPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY---------------FESMPYRLDESTGLVDY  231 (520)
Q Consensus       169 s~A~~~~l~al--l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~---------------~~~v~~~~d~~~~~iD~  231 (520)
                      ++|+.+++...  ....++|+..++.|.|+.. +.    ......+..               ...+.++      ..|+
T Consensus       114 seA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~  182 (423)
T TIGR00713       114 TEATMSAVRLARGYTGRDKIIKFEGCYHGHHD-AL----LVKAGSGAATLGLPTSPGVPEDFAKLTLVLP------YNDL  182 (423)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEEcCCCCCChh-hh----hccccCcccccCCCCCCCCCcccccceEEeC------CCCH
Confidence            99999888753  2356899999887654310 00    000000000               0011111      1288


Q ss_pred             HHHHHHhhh--cCCcEEEEc-CCCCCC-CCC----HHHHHHHHHHhCCEEEEechhhccccccccc-CCCCC-cccEEEe
Q 010008          232 DMLEKTAIL--FRPKLIIAG-ASAYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADPFK-YCDVVTT  301 (520)
Q Consensus       232 d~le~~i~~--~~pklIi~~-~s~~p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~~p~~-~aDiv~~  301 (520)
                      ++++++++.  .++++|++. .+++++ ..+    +++|+++|+++|+++|+|++| .|+...... ...+. ..|++  
T Consensus       183 ~~l~~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~-~g~r~g~~~~~~~~~~~pDi~--  259 (423)
T TIGR00713       183 EALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVM-TGFRVALGGAQEYFGVEPDLT--  259 (423)
T ss_pred             HHHHHHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccc-cccccCcchhHHHhCCCcchh--
Confidence            999998874  256788875 455544 333    789999999999999999996 555321110 00011 24655  


Q ss_pred             ccCccc-CCCCceEEEeeCCCcchhhHHHhhccc--C-CCCCCCCChHHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHH
Q 010008          302 TTHKSL-RGPRGGMIFFKKDPVLGVELESAINNA--V-FPGLQGGPHNHTIGGLAVCLKHAQSPEF-KVYQNKVVSNCRA  376 (520)
Q Consensus       302 S~hK~l-~GprgG~I~~~~~~~~~~~l~~~i~~~--~-~p~~~g~p~~~~iaala~al~~~~~~~~-~~~~~~i~~na~~  376 (520)
                      +++|.+ .|+|.|++++++      ++.+.+...  . .....+++.....++++ +|+.+.+.++ +...+.....++.
T Consensus       260 t~sK~l~~G~pig~v~~~~------~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a-~l~~~~~~~~~~~~~~~~~~~~~~  332 (423)
T TIGR00713       260 TLGKIIGGGLPVGAFGGRR------EIMERLAPEGPVYQAGTLSGNPLAMAAGLA-TLKLLDEEGVYTELDELAKRLAEG  332 (423)
T ss_pred             hhhhhhcCCCceeeeeEHH------HHHHhhCcCCCeeeccCCCCCHHHHHHHHH-HHHHHhcccHHHHHHHHHHHHHHH
Confidence            578998 568899999988      677766531  1 22233444444444443 5776554333 2333333333334


Q ss_pred             HHHHHHHCCCEEecCCCCCeeEEEEecCCC---------CCH---HHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEcc
Q 010008          377 LASRLVELGYKLVSGGSDNHLVLVDLRPMG---------IDG---ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS  444 (520)
Q Consensus       377 l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g---------~~~---~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~  444 (520)
                      |.+.+.+.++.....+. ..++.+.+....         .+.   ..+.+.|.+.||.+...         ..+.+|++.
T Consensus       333 l~~~~~~~~~~~~v~~~-g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~---------~~~~~~l~~  402 (423)
T TIGR00713       333 LSEVLEDTGIPHTVNRV-GSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPS---------QFEACFLSA  402 (423)
T ss_pred             HHHHHHhcCCCeEEEee-ccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEEecC---------CccceeeEC
Confidence            44444555654422111 223333232111         122   24556677799998431         112478864


Q ss_pred             CCccccCCCHHHHHHHHHHHHHHHH
Q 010008          445 PAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       445 ~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +      ++++|++++.+.+.+++.
T Consensus       403 ~------~t~~~i~~~~~~l~~~l~  421 (423)
T TIGR00713       403 A------HTEEDIENTIEAAEEVFA  421 (423)
T ss_pred             C------CCHHHHHHHHHHHHHHHh
Confidence            3      458999999999988775

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.59  E-value=1.2e-12  Score=136.50  Aligned_cols=307  Identities=14%  Similarity=0.115  Sum_probs=173.4

Q ss_pred             hHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh--CCCC
Q 010008          106 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPH  183 (520)
Q Consensus       106 ~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al--l~pG  183 (520)
                      .|.|++|+...+...+  +++. .++      ..++    +.+++.+...++.  ..+...||++||..++...  ...+
T Consensus        46 ~p~v~~a~~~~~~~~~--~~~~-~~~------~~~~----~~la~~l~~~~~~--~~~~~~SGseA~~~Al~~ar~~~~~  110 (375)
T PRK04260         46 HPQVQQALQKQAGLIW--HSPN-LYL------NSLQ----EEVAQKLIGDKDY--LAFFCNSGAEANEAAIKIARKATGK  110 (375)
T ss_pred             CHHHHHHHHHHHHhcC--cccC-ccC------CHHH----HHHHHHHhcCcCC--EEEEcCccHHHHHHHHHHHHHhcCC
Confidence            6778888887775322  2222 111      1223    2233333222221  1244688999999887765  3456


Q ss_pred             CEEEEcCCCCCccccccccccccccccccce-----EEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--C
Q 010008          184 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----FESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--D  256 (520)
Q Consensus       184 D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~-----~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~  256 (520)
                      ++|+..+..+.|....+       ....+..     +.. .++........|++++++.+.+ ++.+|++...++++  .
T Consensus       111 ~~vv~~~~~yHg~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~dl~~l~~~l~~-~~a~vi~e~v~~~~G~~  181 (375)
T PRK04260        111 QEIITFQNSFHGRTFGS-------MSATGQDKIKDGFGD-GVPHFSYAIFNDLNSVKALVNK-NTAAVMLELVQGESGVL  181 (375)
T ss_pred             CeEEEECCCcCcccHHH-------HhccCCcccCCCCCC-CCCCeEEeCCCCHHHHHHhcCC-CeEEEEECCeECCCCCc
Confidence            78888876643321111       1111110     000 0000000012488999988865 67788887544433  2


Q ss_pred             C----CHHHHHHHHHHhCCEEEEechhhcccccccccCC--CCC-cccEEEeccCcccC-CCCceEEEeeCCCcchhhHH
Q 010008          257 F----DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDPVLGVELE  328 (520)
Q Consensus       257 ~----d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~--p~~-~aDiv~~S~hK~l~-GprgG~I~~~~~~~~~~~l~  328 (520)
                      .    .++++.++|+++|+++++|++|. |+...+....  -.. ..|++  |++|.|. |.+.|++++++      ++.
T Consensus       182 ~~~~~~l~~~~~l~~~~~~~~i~De~~~-g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~ig~~~~~~------~~~  252 (375)
T PRK04260        182 PADKDFVKALADYCQETGILLIVDEVQT-GMGRTGKLYAFEHYGIEPDIF--TLAKGLANGVPVGAMLAKS------SLG  252 (375)
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcccchhhhHhhCCCCCEE--EecccccCCcceEEEEEcH------HHH
Confidence            2    28999999999999999999974 6543332111  011 24655  6789995 66889999987      666


Q ss_pred             HhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH----CC-CEEecCCCCCeeEEEEec
Q 010008          329 SAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LG-YKLVSGGSDNHLVLVDLR  403 (520)
Q Consensus       329 ~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~----~G-~~v~~~gt~~~~~~vd~~  403 (520)
                      +.+.........+++... .++....++....+   ++.+++.++.+.+.+.|.+    .+ +..+.+  ...++++++.
T Consensus       253 ~~~~~~~~~~t~~~~~~~-~~aa~a~l~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~g~~~~~~~~  326 (375)
T PRK04260        253 GAFGYGSHGSTFGGNKLS-MAAASATLDIMLTA---GFLEQALENGNYLQEQLQKALQDKETVTTVRG--LGYMIGIETT  326 (375)
T ss_pred             hhcCCCCCCCCCCcCHHH-HHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHhhCCCeeEEec--cceEEEEEec
Confidence            666543222233333333 33333456554332   3445555555555555544    32 222222  2345566653


Q ss_pred             CCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          404 PMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       404 ~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                         .+...+.+.|.+.||.+.    |.     ..+.+|++++..    ++++|++++.+.|+++
T Consensus       327 ---~~~~~~~~~l~~~Gi~v~----~~-----~~~~lR~~~~~~----~t~~~i~~~l~~l~~~  374 (375)
T PRK04260        327 ---ADLSQLVEAARDKGLIVL----TA-----GTNVIRLLPPLT----LTKEEIEQGIAILSEV  374 (375)
T ss_pred             ---CcHHHHHHHHHhCCCEEe----cC-----CCCEEEEcCCCc----cCHHHHHHHHHHHHHh
Confidence               245678888989999983    32     246899987643    5589999999998765

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.58  E-value=8.5e-13  Score=150.45  Aligned_cols=273  Identities=17%  Similarity=0.124  Sum_probs=176.5

Q ss_pred             HHHHHHHHcCCCCCCCceeeecCCh-HHHHHHHHHhh-CCCC--CEEEEcCCCCCccccccccccccccccccceEEEEE
Q 010008          144 CQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAI-LKPH--DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMP  219 (520)
Q Consensus       144 a~~~~~~lfg~~~~~~~~~V~~~sG-s~A~~~~l~al-l~pG--D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~  219 (520)
                      .+..++++.|++.+    |+..+.+ |.+..++++++ +++|  |+|++.+..|+....... +   .....|  ++++.
T Consensus       126 ~Qt~la~LtG~~~a----naSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~-t---~a~~~G--~ev~~  195 (954)
T PRK05367        126 FQTMVADLTGLEIA----NASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLR-T---RAEPLG--IEVVV  195 (954)
T ss_pred             HHHHHHHHHCCChh----hccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHH-H---HHHhCC--CEEEE
Confidence            56789999999975    4444444 45666677776 5564  999999988765532110 0   112234  46666


Q ss_pred             cccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC-CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-ccc
Q 010008          220 YRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCD  297 (520)
Q Consensus       220 ~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~-~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aD  297 (520)
                      ++.+.     |.+      .+ ++..+++..|++.+ ..|+++|+++||++|+++++|+.+.+..+.    ..|-+ ++|
T Consensus       196 ~~~~~-----d~~------~~-~~~~vlvq~p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l----~~pge~GaD  259 (954)
T PRK05367        196 GDAAK-----ALD------HD-DVFGVLLQYPGTSGEVRDYTALIAAAHARGALVAVAADLLALTLL----TPPGEMGAD  259 (954)
T ss_pred             ecCcc-----CCC------cc-cEEEEEEecCCCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCC----CChhhcCCC
Confidence            55432     111      11 34455565666554 779999999999999999999877444331    22333 899


Q ss_pred             EEEeccCcc-----cCCCCceEEEeeCCCcchhhHHHhhcccC------------C-----------CCCCCCChHHH--
Q 010008          298 VVTTTTHKS-----LRGPRGGMIFFKKDPVLGVELESAINNAV------------F-----------PGLQGGPHNHT--  347 (520)
Q Consensus       298 iv~~S~hK~-----l~GprgG~I~~~~~~~~~~~l~~~i~~~~------------~-----------p~~~g~p~~~~--  347 (520)
                      |+++++|||     ++||..|++++++      ++.+++...+            +           ..-.++.+...  
T Consensus       260 i~vgs~qkfg~P~g~GGP~aGflavr~------~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~q  333 (954)
T PRK05367        260 IAVGSAQRFGVPMGFGGPHAAYFAVRD------AYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQ  333 (954)
T ss_pred             EEEeeCcccCCCCCCCCCCEEEEEECH------HHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHH
Confidence            999999999     6788779999987      3333321000            0           00123323221  


Q ss_pred             -HHHHHHH--HHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEc
Q 010008          348 -IGGLAVC--LKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN  424 (520)
Q Consensus       348 -iaala~a--l~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~  424 (520)
                       +.++.++  +..+...+.++..+++..++.++++.|.+.|+++..+.. ...+.+++   +.+..++.+.|.++||.+.
T Consensus       334 aL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~~~~~~~~-f~~~~~~~---~~~~~~i~~~l~~~gi~~~  409 (954)
T PRK05367        334 VLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRALGLEVVHDSF-FDTLTVEV---GGDAAAVLARALAAGINLR  409 (954)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCcccCCCCC-CCeEEEeC---CCCHHHHHHHHHHCCceec
Confidence             2222212  233445567888899999999999999888998765421 12233443   2367889999999999984


Q ss_pred             CCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHH
Q 010008          425 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  465 (520)
Q Consensus       425 ~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~  465 (520)
                      ..         ..+.+|++....+|    ++|++.+++.+.
T Consensus       410 ~~---------~~~~l~is~~e~~t----~~did~l~~~l~  437 (954)
T PRK05367        410 RV---------DDDHVGISLDETTT----REDLAALLAVFG  437 (954)
T ss_pred             cc---------cCCEEEEEecccCC----HHHHHHHHHHHc
Confidence            31         24579999988776    899999999997

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.57  E-value=5.4e-14  Score=142.93  Aligned_cols=214  Identities=20%  Similarity=0.151  Sum_probs=147.4

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      |++..+.+|    ..++++-|+..     .+...||..|+..++..|+++||+|+..+..|+|....-.    +-....|
T Consensus        75 ~nPt~~~le----~~iaal~ga~~-----~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~----~~~~~~g  141 (409)
T KOG0053|consen   75 GNPTRDVLE----SGIAALEGAAH-----ALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILR----KFLPKFG  141 (409)
T ss_pred             CCCchHHHH----HHHHHHhCCce-----EEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHH----HHHHHhC
Confidence            577788888    57888999986     3556899999999999999999999999988888642111    0011122


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .  +..++++      -|++++++.+++ ++++|++.+|.||.  ..|+++++++|+++|+++++|.+-..+     +..
T Consensus       142 i--e~~~vd~------~~~~~~~~~i~~-~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p-----~~~  207 (409)
T KOG0053|consen  142 G--EGDFVDV------DDLKKILKAIKE-NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSP-----YNQ  207 (409)
T ss_pred             c--eeeeech------hhHHHHHHhhcc-CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcc-----ccc
Confidence            2  3333222      256778888888 89999999999998  789999999999999999999973322     334


Q ss_pred             CCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  366 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~  366 (520)
                      .|++ |||||+.|.+|++.|-.   +|.++.+.+     ++.+++..... .+.+.++  .+.+. ..++.+.  .+.-+
T Consensus       208 ~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~-----~~~~~l~~~~~-~lg~~~~--p~~~~-ll~Rglk--tl~lR  276 (409)
T KOG0053|consen  208 DPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSE-----ELASRLKFLQE-DLGWCED--PFDLF-LLSRGLK--TLHLR  276 (409)
T ss_pred             ChhhcCCCEEEEeeeeeecCCcceeeeEEecCcH-----HHHHHHHHHHH-HhcCCCC--HHHHH-HHhcCcc--hhhhh
Confidence            5666 69999999999998854   388888743     67776654321 1111111  12111 1111111  12335


Q ss_pred             HHHHHHHHHHHHHHHHHC
Q 010008          367 QNKVVSNCRALASRLVEL  384 (520)
Q Consensus       367 ~~~i~~na~~l~~~L~~~  384 (520)
                      +++..+|+..+++.|.+.
T Consensus       277 i~~~~ena~~~A~~Le~~  294 (409)
T KOG0053|consen  277 INKHSENALKIALLLEAH  294 (409)
T ss_pred             HHHHHHHHHHHHHHhhhC
Confidence            677778888889998773

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.57  E-value=4.3e-13  Score=133.83  Aligned_cols=324  Identities=18%  Similarity=0.222  Sum_probs=201.8

Q ss_pred             ccceEec-------CCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCC-----CCCce
Q 010008           94 KSLELIA-------SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE-----NKWGV  161 (520)
Q Consensus        94 ~~i~Lia-------sen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~-----~~~~~  161 (520)
                      +.|||..       +..++-+.|.+|-...+.+..+..|      -+-+..+.+.+.+   .+-+||.++     +.+ +
T Consensus        27 ~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Y------l~i~G~~~f~~~~---~~llFG~d~~~l~~~Rv-~   96 (396)
T COG1448          27 NKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNY------LPIEGLPEFLEAV---QKLLFGADSPALAEDRV-A   96 (396)
T ss_pred             CeeeeeeeeeeCCCCCcchhHHHHHHHHHhhcccccccc------CCcCCcHHHHHHH---HHHhcCCCcHHHHhhhH-h
Confidence            5688864       2235668899988777665544333      3333334444322   234789653     233 5


Q ss_pred             eeecCChHHHHHHHHH--hhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEccc-CCCCCCCCHHHHHHHh
Q 010008          162 NVQPLSGSPANFEVYT--AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEKTA  238 (520)
Q Consensus       162 ~V~~~sGs~A~~~~l~--all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~-d~~~~~iD~d~le~~i  238 (520)
                      .||..+||.|+..+..  +-..|..+|-+++|+++.|..        .....|  +++..|++ |.++..+|++.+.+.+
T Consensus        97 t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~--------If~~aG--l~v~~Y~Yyd~~~~~~df~~mla~L  166 (396)
T COG1448          97 TVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKA--------IFEAAG--LEVETYPYYDAETKGLDFDGMLADL  166 (396)
T ss_pred             heecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHH--------HHHhcC--CceeeeeccccccccccHHHHHHHH
Confidence            7999999988876543  335677889999999887732        223344  45555554 6567789999987777


Q ss_pred             hhcCC-cEEEEc-CCCCCCC-----CCHHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-----cc-cEEEecc
Q 010008          239 ILFRP-KLIIAG-ASAYPRD-----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-----YC-DVVTTTT  303 (520)
Q Consensus       239 ~~~~p-klIi~~-~s~~p~~-----~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-----~a-Div~~S~  303 (520)
                      +.... .+|++. ..+|||-     ..|++|.++.++.|.+-+.|.| |-|+-.+ ...  ..+.     +. =+|++|+
T Consensus       167 ~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~A-YQGF~~G-leeDa~~lR~~a~~~~~~lva~S~  244 (396)
T COG1448         167 KTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIA-YQGFADG-LEEDAYALRLFAEVGPELLVASSF  244 (396)
T ss_pred             HhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehh-hhhhccc-hHHHHHHHHHHHHhCCcEEEEehh
Confidence            65333 355554 4578872     3488999999999999999998 5554322 111  0111     12 3788999


Q ss_pred             Cccc--CCCCceE-EEeeCCCcchhhHHHhhcc---cCCCCCCCCChHHHHHHHHHH-----HHHhcCchhHHHHHHHHH
Q 010008          304 HKSL--RGPRGGM-IFFKKDPVLGVELESAINN---AVFPGLQGGPHNHTIGGLAVC-----LKHAQSPEFKVYQNKVVS  372 (520)
Q Consensus       304 hK~l--~GprgG~-I~~~~~~~~~~~l~~~i~~---~~~p~~~g~p~~~~iaala~a-----l~~~~~~~~~~~~~~i~~  372 (520)
                      +|.|  .|-|.|. .+...+.    +...++..   ......+++|..|..+-.+.-     |+..-..+..++++++.+
T Consensus       245 SKnfgLYgERVGa~~vva~~~----~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~  320 (396)
T COG1448         245 SKNFGLYGERVGALSVVAEDA----EEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILE  320 (396)
T ss_pred             hhhhhhhhhccceeEEEeCCH----HHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence            9986  6788754 3443321    22222211   112234556665554433322     322222345778899999


Q ss_pred             HHHHHHHHHHHCC----CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCcc
Q 010008          373 NCRALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMT  448 (520)
Q Consensus       373 na~~l~~~L~~~G----~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~t  448 (520)
                      .+..|.+.|++.|    |..+..  .+.++.  .  .|++.+++.++.++.||.+-.            +| ||++.   
T Consensus       321 mR~~lv~~L~~~~~~~~f~~i~~--Q~GMFs--y--~Gls~~QV~rLree~~IY~v~------------sG-Ri~va---  378 (396)
T COG1448         321 MRQALVDALKALGAPRNFDFIIS--QRGMFS--Y--TGLSPEQVDRLREEFGIYLVA------------SG-RINVA---  378 (396)
T ss_pred             HHHHHHHHHHhhCCCcccchHhh--cCceee--c--CCCCHHHHHHHHHhccEEEec------------CC-eeeec---
Confidence            9999999998833    444432  223322  2  377899999999999999832            22 88876   


Q ss_pred             ccCCCHHHHHHHHHHHHHH
Q 010008          449 TRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       449 t~g~~~~d~~~la~~i~~~  467 (520)
                        |+++..++++++.|.++
T Consensus       379 --Gl~~~ni~~va~ai~~v  395 (396)
T COG1448         379 --GLNTSNIDYVAKAIAAV  395 (396)
T ss_pred             --cCChhhHHHHHHHHHhh
Confidence              45579999999999875

>PLN02624 ornithine-delta-aminotransferase

Probab=99.53  E-value=1e-11  Score=133.30  Aligned_cols=317  Identities=17%  Similarity=0.151  Sum_probs=175.3

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC---
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---  181 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~---  181 (520)
                      -.|.|.+|+...+.+ +..+.+  +++  ++...++    .++++++++.+.     .+..+||++|+..++.....   
T Consensus        92 ~~p~v~~ai~~ql~~-~~~~~~--~~~--~~~~~~l----a~~L~~~~~~~~-----~~f~~SGseA~e~AlklAr~~~~  157 (474)
T PLN02624         92 CHPKIIKALTEQAEK-LTLSSR--AFY--NDKFPEF----AEYLTSMFGYDM-----VLPMNTGAEGVETAIKLARKWGY  157 (474)
T ss_pred             CCHHHHHHHHHHHHh-cCCccc--ccC--CHHHHHH----HHHHHhhcCCCe-----EEEeCChHHHHHHHHHHHHHHHH
Confidence            379999999888764 332221  222  2222222    356778887643     24468999999988863221   


Q ss_pred             -----C-CC-EEEEcCCCCCccccccccccccccccccceEEEEEc-ccCCCC---CCCCHHHHHHHhhhc--CCcEEEE
Q 010008          182 -----P-HD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY-RLDEST---GLVDYDMLEKTAILF--RPKLIIA  248 (520)
Q Consensus       182 -----p-GD-~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~-~~d~~~---~~iD~d~le~~i~~~--~pklIi~  248 (520)
                           + +. +|+...-.|     ||....  .+++.+.......+ +..+..   ...|++.+++.++..  +..+|++
T Consensus       158 ~~~g~~~~~~~ii~~~~~y-----HG~t~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~iaaiii  230 (474)
T PLN02624        158 EKKGIPKNEAIIVSCCGCF-----HGRTLA--AISMSCDNEATRGFGPLLPGHLKVDFGDLDALEKIFEEDGDRIAAFLF  230 (474)
T ss_pred             hhcCCCCCCcEEEEECCCc-----CCCCHH--HhhcCCCccccccCCCCCCCceEeCCCCHHHHHHHHHhCCCCEEEEEE
Confidence                 2 33 455554322     332111  11111110000000 000000   012788899888642  4567888


Q ss_pred             cCCCCCC--CCC----HHHHHHHHHHhCCEEEEechhhcccccccc-cCCC-CC-cccEEEeccCcccCC--CCceEEEe
Q 010008          249 GASAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASV-VADP-FK-YCDVVTTTTHKSLRG--PRGGMIFF  317 (520)
Q Consensus       249 ~~s~~p~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~~p-~~-~aDiv~~S~hK~l~G--prgG~I~~  317 (520)
                      ....+++  ..+    +++|+++|++||+++|+|++|. |+...|. .... .. ..|++++  .|.+.|  ++.|+++.
T Consensus       231 Epv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~t-G~GrtG~~~a~~~~~i~pDiv~l--sK~lggG~~pigav~~  307 (474)
T PLN02624        231 EPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQT-GLARTGKMLACDWEEVRPDVVIL--GKALGGGVIPVSAVLA  307 (474)
T ss_pred             CCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CcCcCcchhhHHhcCCCCCEEEe--cccccCCCCcceeeee
Confidence            7655543  444    9999999999999999999985 5432221 1000 01 3577776  499854  57788888


Q ss_pred             eCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCC--CE----EecC
Q 010008          318 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG--YK----LVSG  391 (520)
Q Consensus       318 ~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G--~~----v~~~  391 (520)
                      ++      ++...+.........+++.....+++ ++|+.+.+.+   ..++..+..+.+.+.|.+..  ++    .+.+
T Consensus       308 ~~------~i~~~~~~~~~~~T~~g~pl~~aaa~-aaLe~l~~~~---l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg  377 (474)
T PLN02624        308 DK------DVMLCIKPGEHGSTFGGNPLASAVAM-AALQVVQDEK---LAERSAKLGQELRDQLQKIQKQFPKLIKEVRG  377 (474)
T ss_pred             cH------HHHhHhccCCcCCCCCCCHHHHHHHH-HHHHHHHhch---HHHHHHHHHHHHHHHHHHHHHhCCCceEEEEe
Confidence            77      56555543322223344444444443 4566654433   23444455566666665521  21    1222


Q ss_pred             CCCCeeEEEEecCCC---CCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          392 GSDNHLVLVDLRPMG---IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       392 gt~~~~~~vd~~~~g---~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                        ...++.+.+....   ....++.+.|.+.||.+.    |+     ....|||+.+..    ++++|++++.+.|++++
T Consensus       378 --~G~~~~i~l~~~~~~~~~a~~~~~~L~e~GV~v~----p~-----~~~~lR~~p~l~----~t~e~id~~l~~L~~~l  442 (474)
T PLN02624        378 --RGLLNAVVLNSPKLGPVSAYDVCLKLKERGLLAK----PT-----HDTIIRLAPPLS----ISEDELQECSKALSDVL  442 (474)
T ss_pred             --eEEEEEEEecCCCcChHHHHHHHHHHHhCCeEEe----cC-----CCCEEEEECCcc----CCHHHHHHHHHHHHHHH
Confidence              1223333343211   123456777889999983    32     246799986533    56899999999999887


Q ss_pred             HH
Q 010008          469 EI  470 (520)
Q Consensus       469 ~~  470 (520)
                      ..
T Consensus       443 ~~  444 (474)
T PLN02624        443 EH  444 (474)
T ss_pred             HH
Confidence            54

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.52  E-value=1e-11  Score=126.05  Aligned_cols=330  Identities=19%  Similarity=0.209  Sum_probs=195.0

Q ss_pred             ccceEecCC---C--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh
Q 010008           94 KSLELIASE---N--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG  168 (520)
Q Consensus        94 ~~i~Liase---n--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG  168 (520)
                      ..|++.++-   |  --.|.+.+|+...+..-+.   .+.-||.     +..++++ +++.++.+ ..+.   .+..+||
T Consensus        43 ~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h---~sn~~~~-----~~~~~la-~~L~~~s~-~~d~---vff~NSG  109 (404)
T COG4992          43 EYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWH---VSNLFYN-----EPQAELA-EKLVELSP-FADR---VFFCNSG  109 (404)
T ss_pred             EeeeeccceeeeccCCCCHHHHHHHHHHHHHhhh---cccccCC-----hHHHHHH-HHHHhhCc-cccE---EEEcCCc
Confidence            457776533   2  2479999998876654331   1111222     2233333 56777776 3332   3456899


Q ss_pred             HHHHHHHHHhh---CC-CC-CEEEEcCCCCCccccccccccccccccccce-EEEEEcccCCCC---CCCCHHHHHHHhh
Q 010008          169 SPANFEVYTAI---LK-PH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDEST---GLVDYDMLEKTAI  239 (520)
Q Consensus       169 s~A~~~~l~al---l~-pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~-~~~v~~~~d~~~---~~iD~d~le~~i~  239 (520)
                      ++||.+++...   .. |+ -+|+...-.+.|+ |.+      .+++.+.. |.--+.|+-+.-   -.-|+++++++++
T Consensus       110 aEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGR-T~g------alS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai~  182 (404)
T COG4992         110 AEANEAALKLARKYTGDPEKSKIIAFENSFHGR-TLG------ALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAID  182 (404)
T ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCc-cce------eeeccCChhhccCCCCCCCCceecCCCCHHHHHHHhc
Confidence            99999988653   22 22 3788777665443 111      23344432 111111222211   1348899999999


Q ss_pred             hcCCcEEEEcCC-CCCC-----CCCHHHHHHHHHHhCCEEEEechhhcccccccc-cC-CCCC-cccEEEeccCcccCC-
Q 010008          240 LFRPKLIIAGAS-AYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASV-VA-DPFK-YCDVVTTTTHKSLRG-  309 (520)
Q Consensus       240 ~~~pklIi~~~s-~~p~-----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~-~p~~-~aDiv~~S~hK~l~G-  309 (520)
                      + ++-+||+..- .-++     ..-+++++++|++||+++|.|+.|. |+--.|. +. .-.. ..||++..  |.|.| 
T Consensus       183 ~-~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQt-G~GRTGk~fA~e~~gV~PDI~tla--K~LgGG  258 (404)
T COG4992         183 E-DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQT-GLGRTGKLFAYEHYGVEPDILTLA--KALGGG  258 (404)
T ss_pred             c-CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEecccc-CCCccchHHHHHHhCCCCCEEEee--ccccCC
Confidence            9 8999988632 1222     2237899999999999999999874 4322221 00 0001 25888877  99954 


Q ss_pred             CCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCE
Q 010008          310 PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYK  387 (520)
Q Consensus       310 prgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~  387 (520)
                      -..|.++.++      ++.+.+....-..+.||......++ .++|+.+.++++   .+++.+..++|.+.|++.  .++
T Consensus       259 ~PigA~la~~------~~~~~~~~G~HgSTfGGNpLacAv~-~a~l~~l~~e~l---l~~v~~~g~~~~~~L~~l~~~~~  328 (404)
T COG4992         259 FPIGAMLATE------EIASAFTPGDHGSTFGGNPLACAVA-LAVLEVLLEEGL---LENVREKGEYLLQRLRELKRRYP  328 (404)
T ss_pred             ccceeeEEch------hhhhcCCCCcccCCCCcCHHHHHHH-HHHHHHHcchhH---HHHHHHHHHHHHHHHHHHhhcCC
Confidence            4456666665      5555554443333455533333333 346777766554   566666678888888773  444


Q ss_pred             EecCCCCCe-eEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          388 LVSGGSDNH-LVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       388 v~~~gt~~~-~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      ++..-.... ++=+.+... .....+.+.|.+.|+.+...         .+..||+..| ++   ++++|+++..+.+.+
T Consensus       329 ~v~~vRG~GLmiGiel~~~-~~a~~~~~~~~~~gvL~~~a---------~~~ViR~~Pp-L~---i~~eei~~~~~~l~~  394 (404)
T COG4992         329 LVKEVRGRGLMIGIELKEP-YRARDIVRALREEGVLVLPA---------GPNVIRFLPP-LV---ITEEEIDEALDALER  394 (404)
T ss_pred             ceeeeecceeEEEEEecCc-ccHHHHHHHHHHCCeEEecC---------CCCeEEecCC-cc---CCHHHHHHHHHHHHH
Confidence            444311122 333445432 13577888999999999532         3458999655 44   679999999999999


Q ss_pred             HHHHH
Q 010008          467 GVEIT  471 (520)
Q Consensus       467 ~l~~~  471 (520)
                      ++...
T Consensus       395 ~l~~~  399 (404)
T COG4992         395 ALAAA  399 (404)
T ss_pred             HHHHh
Confidence            98754

>PLN00144 acetylornithine transaminase

Probab=99.51  E-value=3.5e-11  Score=125.79  Aligned_cols=316  Identities=17%  Similarity=0.144  Sum_probs=175.6

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh---C
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI---L  180 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al---l  180 (520)
                      .-.|.|.+|+...+....   +.+..|+  ++.  .+ ++ .+++.+..+.+.     .....|||+|+.+++...   .
T Consensus        31 h~~p~v~~ai~~q~~~~~---~~~~~~~--~~~--~~-~l-a~~l~~~~~~~~-----v~f~~sGseA~e~AlklAr~~~   96 (382)
T PLN00144         31 HGDPDWVKAVAEQAGTLA---HVSNVYH--TIP--QV-EL-AKRLVASSFADR-----VFFCNSGTEANEAAIKFARKYQ   96 (382)
T ss_pred             CCCHHHHHHHHHHHHhcC---Ccccccc--CHH--HH-HH-HHHHHhcCCCCe-----EEEeCCcHHHHHHHHHHHHHHH
Confidence            346888888887775421   1111111  221  11 22 355666655432     244589999999887643   1


Q ss_pred             C------C------CCEEEEcCCCCCccccccccccccccccccce-EEEEEcccCCCC---CCCCHHHHHHHhhhcCCc
Q 010008          181 K------P------HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDEST---GLVDYDMLEKTAILFRPK  244 (520)
Q Consensus       181 ~------p------GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~-~~~v~~~~d~~~---~~iD~d~le~~i~~~~pk  244 (520)
                      .      +      ..+|+...-.|.|.     ...  .....+.. +.....+..+..   ...|++.+++.+...+++
T Consensus        97 ~~~~~~~~~~~~~~r~~ii~~~~~yHG~-----t~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~a  169 (382)
T PLN00144         97 RVRAPDKKDPAASSATEFVSFSNSFHGR-----TLG--ALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQKGKTA  169 (382)
T ss_pred             hccCCCCccccccccceEEEECCCcccc-----cHH--HHhcCCCccccccCCCCCCCeEEeCCCCHHHHHHhcCCCCeE
Confidence            1      1      24688877654332     110  01111110 000000110000   013789999888655788


Q ss_pred             EEEEcCCCCCC----CCC--HHHHHHHHHHhCCEEEEechhhccccccccc-CC-CCC-cccEEEeccCccc-CCCCceE
Q 010008          245 LIIAGASAYPR----DFD--YPRMRQIADAVGALLMMDMAHISGLVAASVV-AD-PFK-YCDVVTTTTHKSL-RGPRGGM  314 (520)
Q Consensus       245 lIi~~~s~~p~----~~d--~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~~-p~~-~aDiv~~S~hK~l-~GprgG~  314 (520)
                      +|++....+++    ...  +++|+++|++||+++|.|++|. |+-..+.. +. ... ..|+++  ++|.| +|-+.|+
T Consensus       170 avi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~t-g~gr~g~~~~~~~~~~~PDi~t--~sK~l~~G~pig~  246 (382)
T PLN00144        170 AVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQC-GLGRTGYLWAHEAYGVEPDIMT--LAKPLAGGLPIGA  246 (382)
T ss_pred             EEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCccchHhhhhhcCCCCCEEE--ecccccCCcceEE
Confidence            88887544443    223  8899999999999999999964 54333321 11 011 357555  45998 4677899


Q ss_pred             EEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH--CCCEEec--
Q 010008          315 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE--LGYKLVS--  390 (520)
Q Consensus       315 I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~--~G~~v~~--  390 (520)
                      +++++      ++.+.+.........+++.... ++..+.|+.+.+.++.   +++.+..+.+.+.|.+  ...+.+.  
T Consensus       247 v~~~~------~~~~~~~~~~~~~T~~~~pl~~-aaa~a~l~~i~~~~~~---~~~~~~g~~l~~~l~~~~~~~~~~~~v  316 (382)
T PLN00144        247 VLVTE------KVASAINPGDHGSTFAGGPLVC-NAALAVLDKISKPGFL---ASVAKKGEYLRELLRRKLGGNPHVKEV  316 (382)
T ss_pred             EEEcH------HHHhccCCCCCCCCCCCCHHHH-HHHHHHHHHHhhchHH---HHHHHHHHHHHHHHHHHHhhCCCceee
Confidence            99987      6776665433333344434433 3333456766554443   3444444555554443  1221111  


Q ss_pred             CCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          391 GGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       391 ~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      .+ ...+.++.+.   .+...+.+.+.+.||.+.    |+.    ....||++.+..    ++++|+++..+.|.+++.
T Consensus       317 rg-~G~~~~l~l~---~~~~~~~~~~~~~Gv~i~----~~~----~~~~lrl~p~~~----~~~~~i~~~~~~l~~~l~  379 (382)
T PLN00144        317 RG-VGLLVGIQLD---VPAGPLVDACRDSGLLVL----TAG----KGDVVRLVPPLV----ISEAELEQAVEILADCLP  379 (382)
T ss_pred             ec-CceEEEEEec---CccHHHHHHHHHCCeEEe----ecC----CCCEEEEeCCCc----cCHHHHHHHHHHHHHHHH
Confidence            12 2355666662   234667788889999984    321    136899987642    348999999999998885

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=1.5e-12  Score=131.65  Aligned_cols=322  Identities=19%  Similarity=0.178  Sum_probs=196.8

Q ss_pred             CCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcc-hhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh
Q 010008          101 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGN-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI  179 (520)
Q Consensus       101 sen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~-~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al  179 (520)
                      +..+..+.+.+++..     |....-+.|...|+ +...++|    +..++++|.+.+     +...-|-..|...+.+|
T Consensus       152 ~~g~ca~~~~~~~~k-----ygl~~css~~e~G~~~~hkelE----~l~A~f~g~e~a-----~vF~mGf~TNs~~~p~l  217 (519)
T KOG1357|consen  152 SVGPCAEASLKSFDK-----YGLSRCSSRHEAGTTEEHKELE----ELVARFLGVEDA-----IVFSMGFATNSMNIPSL  217 (519)
T ss_pred             cCCcCChHHHHHHHH-----hcccccccchhcccHHHHHHHH----HHHHHhcCCcce-----EEEeccccccccCccee
Confidence            334556777777753     33333333333333 3345666    667889999874     33456777888888999


Q ss_pred             CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh---------cCC--cEEEE
Q 010008          180 LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---------FRP--KLIIA  248 (520)
Q Consensus       180 l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~---------~~p--klIi~  248 (520)
                      +.||.-|+.-.+.|.+...        .+..+|+..++..  .+      |+.+||+.+++         ++|  |++++
T Consensus       218 ~~~gsLIiSDelNHaSi~~--------GaRLSgAtiRVfk--HN------dm~~LEr~Lrd~I~~gqP~Thrp~kki~ii  281 (519)
T KOG1357|consen  218 LGKGSLIISDELNHASLIT--------GARLSGATTRVFR--HN------DMQGLERLLRDAIVYGQPKTHRPWKKILIC  281 (519)
T ss_pred             ecCCcceeeccccchheec--------cccccCceEEEEe--cC------CHHHHHHHHHHHHhcCCCCcCCcchheeee
Confidence            9999999998888765432        2356676444333  22      44555555443         123  45555


Q ss_pred             c---CCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccc-c--c--cCCC-CCcccEEEeccCcccCCCCceEEEeeC
Q 010008          249 G---ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-S--V--VADP-FKYCDVVTTTTHKSLRGPRGGMIFFKK  319 (520)
Q Consensus       249 ~---~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~-~--~--~~~p-~~~aDiv~~S~hK~l~GprgG~I~~~~  319 (520)
                      .   ++.-+...++.++.++++++.++|+.|+||+.|.... |  +  +..+ ...+||+.+++.|++ |--||+|.+++
T Consensus       282 vegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSf-ga~GGyiagsk  360 (519)
T KOG1357|consen  282 VEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSF-GAAGGYIAGSK  360 (519)
T ss_pred             eccceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhc-ccccceecCcH
Confidence            4   3455568899999999999999999999999988732 2  1  1111 125789999999997 45689999998


Q ss_pred             CCcchhhHHHhhcccCCCCCCCCChHHHHHHH-HHHHHHhcC----chhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCC
Q 010008          320 DPVLGVELESAINNAVFPGLQGGPHNHTIGGL-AVCLKHAQS----PEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD  394 (520)
Q Consensus       320 ~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaal-a~al~~~~~----~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~  394 (520)
                            ++.+.+...--....++....-++.. -.+++.+..    ...++..+++.+|+.++...|+..||-+... .|
T Consensus       361 ------~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~gfivyG~-~d  433 (519)
T KOG1357|consen  361 ------ELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMGFIVYGN-ND  433 (519)
T ss_pred             ------HHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcCcEEEecC-CC
Confidence                  66665543221112222221122221 224554442    2247788999999999999999888887654 34


Q ss_pred             CeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          395 NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       395 ~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      +..+.+-+-....- ..+.+.|.+.+|.+-....|-  .|...+..|++..+-.    +.++++++.+.+.++
T Consensus       434 SpVvplll~~~~k~-~~f~r~~l~~nigvVvvgfPa--tpl~e~r~R~c~Sa~h----t~e~ld~~l~~i~~~  499 (519)
T KOG1357|consen  434 SPVVPLLLYGPAKI-VAFSREMLERNIGVVVVGFPA--TPLLESRARFCLSASH----TKEDLDRALEVIDRV  499 (519)
T ss_pred             CCcceeeecCcccc-cHHHHHHHhcCceEEEEeCCC--chHHHhHHHhhhcccc----cHHHHHHHHHHHhhh
Confidence            43322211111111 344555656666554333342  2455677898776543    478888888777664

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.48  E-value=3.1e-11  Score=126.73  Aligned_cols=313  Identities=16%  Similarity=0.135  Sum_probs=171.5

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC----
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  180 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all----  180 (520)
                      -.|.|.+++...+.+ ...+++  .++      .+.+....+++.+..+.+.     .+..+||++||.+++....    
T Consensus        53 ~~p~v~~a~~~q~~~-~~~~~~--~~~------~~~~~~la~~l~~~~~~~~-----v~f~~SGseA~e~Aik~ar~~~~  118 (395)
T PRK03715         53 CNPGMVEALAAQAEK-LINPSP--AFY------NEPMAKLAGLLTQHSCFDK-----VFFANSGAEANEGAIKLARKWGR  118 (395)
T ss_pred             CCHHHHHHHHHHHHh-cccccc--ccc------CHHHHHHHHHHhhccCCCE-----EEEeCCcHHHHHHHHHHHHHHhh
Confidence            368888888776643 222221  122      1223223355555544332     3456899999999887653    


Q ss_pred             --CCC-CEEEEcCCCCCccccccccccccccccccce-EEEEEcccCCC---CCCCCHHHHHHHhhhcCCcEEEEcCCC-
Q 010008          181 --KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDES---TGLVDYDMLEKTAILFRPKLIIAGASA-  252 (520)
Q Consensus       181 --~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~-~~~v~~~~d~~---~~~iD~d~le~~i~~~~pklIi~~~s~-  252 (520)
                        ++| ++|+..+..|.     |....  .++..+.. +.....+..+.   ....|++++++.+.+ ++.+|++.... 
T Consensus       119 ~~~~~r~~ii~~~~~yH-----G~t~~--~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~aavi~Epv~~  190 (395)
T PRK03715        119 KHKNGAYEIITFDHSFH-----GRTLA--TMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITD-KTVAVMLEPVQG  190 (395)
T ss_pred             ccCCCCcEEEEECCCcC-----CChHH--HHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcCC-CceEEEEeCCcC
Confidence              234 57887775442     22110  12222211 01001111100   013578999988875 67888887332 


Q ss_pred             CCC-CCC----HHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEeccCcccCC-CCceEEEeeCCCcc
Q 010008          253 YPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKDPVL  323 (520)
Q Consensus       253 ~p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S~hK~l~G-prgG~I~~~~~~~~  323 (520)
                      ..+ ..+    +++++++|+++|+++|+|++|. |+-..|.. . .-+. ..|+++++  |.|.| -..|.+++++    
T Consensus       191 ~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~t-G~GRtG~~~a~~~~gv~PDi~t~g--K~lg~G~p~~av~~~~----  263 (395)
T PRK03715        191 EGGVIPATREFMQQLRALTKQHGLLLIVDEVQT-GCGRTGTLFAYELSGIEPDIMTLG--KGIGGGVPLAALLAKA----  263 (395)
T ss_pred             CCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCCCcchhhHhhcCCCCceeeeh--hhhhCCcceEEEEEcc----
Confidence            222 334    8999999999999999999976 54222210 0 0011 36887665  99965 3356777777    


Q ss_pred             hhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC----CCEEecCCCCCeeEE
Q 010008          324 GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL----GYKLVSGGSDNHLVL  399 (520)
Q Consensus       324 ~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~----G~~v~~~gt~~~~~~  399 (520)
                        ++.. +.......+.++... ..++...+|+.+.++   +..+++.++.++|.+.|++.    ++.-+. | ...+.-
T Consensus       264 --~i~~-~~~~~~~~T~~g~pl-~~aaala~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~i~~vr-G-~Glm~~  334 (395)
T PRK03715        264 --EVAV-FEAGDQGGTYNGNPL-MTAVGVAVISQLLAP---GFLEGVRARGEYLKEKLLELSEERGLEGER-G-EGLLRA  334 (395)
T ss_pred             --cccc-ccCCCcCCCCCCCHH-HHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHhhcCCcCeEE-c-ceeEEE
Confidence              3431 111111222333333 333333356666443   34566777777888877652    433222 2 234444


Q ss_pred             EEecCCCCCHHHHHHHHhhc---CeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          400 VDLRPMGIDGARVEKILDMA---SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       400 vd~~~~g~~~~~~~~~L~~~---gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +.+...  ....+.+.+.+.   ||.+...         .+..||+..+..    ++++|++++.+.|+++++.
T Consensus       335 i~l~~~--~~~~~~~~~~~~~~~Gi~~~~~---------~~~~lR~~p~l~----~t~~ei~~~~~~l~~~l~~  393 (395)
T PRK03715        335 LLLGKD--IGPQIVEKARDMQPDGLLLNAP---------RPNLLRFMPALN----VTTEEIDQMIAMLRSVLDK  393 (395)
T ss_pred             EEecCc--hHHHHHHHHHhccCCCEEEeec---------CCCEEEEeCCcc----cCHHHHHHHHHHHHHHHHh
Confidence            555321  234454545455   9998531         135799976643    5699999999999988863

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=99.45  E-value=2.9e-11  Score=122.00  Aligned_cols=285  Identities=15%  Similarity=0.145  Sum_probs=174.2

Q ss_pred             CCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHH
Q 010008          156 ENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDML  234 (520)
Q Consensus       156 ~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~l  234 (520)
                      ...|  +|..|+|. .+++.+++.++++||.|++-..++.+-++        .+...|.  .+++++.|  ...+|+|.|
T Consensus       122 ~~~w--diiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~--------s~~a~gv--~~ipv~md--~~Gi~pE~l  187 (472)
T KOG0634|consen  122 YKNW--DIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQ--------SMEALGV--KIIPVKMD--QDGIDPESL  187 (472)
T ss_pred             CCCc--eEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHH--------hccccCc--eEEecccc--CCCCCHHHH
Confidence            3456  57778998 99999999999999999998876654432        3344553  77777665  457999999


Q ss_pred             HHHhhhc--------CCcEEEEc-CCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccc--------------
Q 010008          235 EKTAILF--------RPKLIIAG-ASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAA--------------  286 (520)
Q Consensus       235 e~~i~~~--------~pklIi~~-~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~--------------  286 (520)
                      ++....-        +|+++..- .-.||+  ...   -++|.+||++|+.++|.|.-++.-....              
T Consensus       188 ~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~  267 (472)
T KOG0634|consen  188 EEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSS  267 (472)
T ss_pred             HHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccCccccH
Confidence            9987531        36777654 345665  333   4589999999999999998755322210              


Q ss_pred             -----cccCCCCC----cccEEEeccCccc-CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHH
Q 010008          287 -----SVVADPFK----YCDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK  356 (520)
Q Consensus       287 -----~~~~~p~~----~aDiv~~S~hK~l-~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~  356 (520)
                           .+.++.+.    |--|-.-||+|-+ +|.|-|||.+++      -+.+++-...--.+++ |+.....-+..-|+
T Consensus       268 ~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~------~~l~ril~~ae~~t~~-pSg~sq~iv~a~l~  340 (472)
T KOG0634|consen  268 SMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNS------LFLKRILDLAEVATSG-PSGFSQGIVYAMLK  340 (472)
T ss_pred             HHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCH------HHHHHHhhhcceeecC-cccccHHHHHHHHH
Confidence                 00111111    1114567999987 788999999998      4555543322112222 32221111222344


Q ss_pred             HhcCchh----HHHHHHHHHHHHHHHHHHHH---CC-CEEecCCCCCeeEEEEec------CCCCC-H-HHHHHHHhhcC
Q 010008          357 HAQSPEF----KVYQNKVVSNCRALASRLVE---LG-YKLVSGGSDNHLVLVDLR------PMGID-G-ARVEKILDMAS  420 (520)
Q Consensus       357 ~~~~~~~----~~~~~~i~~na~~l~~~L~~---~G-~~v~~~gt~~~~~~vd~~------~~g~~-~-~~~~~~L~~~g  420 (520)
                      ...+++|    .+.+..+..++.++..+|.+   .+ +.+..+ ....+.|+.+.      +.+++ . +.+...+.+.|
T Consensus       341 ~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P-~aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~g  419 (472)
T KOG0634|consen  341 RWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPP-KAGMFIWVEIPYINFDTKKSINQIEEIIFIKAVKNG  419 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecC-CcceEEEEEecccccccccchHHHHHHHHHHHHHCC
Confidence            4444443    33344445556666777766   24 455444 44567787763      12333 1 23555667899


Q ss_pred             eEEcCCCCCCCC------CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          421 ITLNKNSVPGDK------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       421 I~v~~~~~Pg~~------~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      |.+    ++|..      ....+-.+|++....     ..+++++-.+.+..+++..
T Consensus       420 V~~----v~G~~F~v~p~~s~~kiffRls~a~a-----~~e~l~~g~~rf~~~ike~  467 (472)
T KOG0634|consen  420 VKL----VCGSWFMVDPESSWSKIFFRLSIAFA-----EPEKLDEGIERFGSVIKEH  467 (472)
T ss_pred             eEE----ecCceeEEcCccCCCcceEEEEeecC-----CHHHHHHHHHHHHHHHHHH
Confidence            988    44432      111223799986543     3678888888888877753

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.44  E-value=1.8e-10  Score=122.28  Aligned_cols=330  Identities=15%  Similarity=0.044  Sum_probs=171.9

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh--CCC
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP  182 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al--l~p  182 (520)
                      -+|.|.+++...+.+. ...+..  .+ +++  ..+ +++ +++.+..+.+...  -.+..+||++|+..++...  ...
T Consensus        58 ~~~~i~~a~~~~~~~~-~~~~~~--~~-~~~--~~~-~la-~~l~~~~~~~~~~--~~~f~~sGsea~e~Alklar~~~~  127 (425)
T PRK08088         58 LHPKVVAAVEAQLKKL-SHTCFQ--VL-AYE--PYL-ELC-EKMNQKVPGDFAK--KTLLVTTGSEAVENAVKIARAATK  127 (425)
T ss_pred             CCHHHHHHHHHHHhhC-CCcccc--cc-CCH--HHH-HHH-HHHHHhCCCCCCC--EEEEeCCcHHHHHHHHHHHHHHhC
Confidence            4788888888777542 111110  01 111  122 233 5666766643311  2356789999888766543  223


Q ss_pred             CCEEEEcCCCCCccccccccccccc-c-cccc-----ceEEEEEcccCCCCCCC--CHHHHHHHhh----hcCCcEEEEc
Q 010008          183 HDRIMGLDLPHGGHLSHGFMTPKRR-V-SGTS-----IYFESMPYRLDESTGLV--DYDMLEKTAI----LFRPKLIIAG  249 (520)
Q Consensus       183 GD~Vl~~~~~~~ghls~g~~~~~~~-v-~~~g-----~~~~~v~~~~d~~~~~i--D~d~le~~i~----~~~pklIi~~  249 (520)
                      ..+|+..++.|.|... +....... . ...+     ..+..++++.+..+...  +++++++++.    ..+..+|++.
T Consensus       128 r~~iv~~~~~yHG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~E  206 (425)
T PRK08088        128 RSGVIAFTGAYHGRTH-YTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIE  206 (425)
T ss_pred             CCeEEEECCccCCccH-HHHHhhCCCCccccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHHHHhccCCCceEEEEEC
Confidence            3566766776544321 10000000 0 0000     00111223322111111  1456787775    2245677775


Q ss_pred             C-CCCCC-CC----CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCccc-CCCCceEEEeeCC
Q 010008          250 A-SAYPR-DF----DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL-RGPRGGMIFFKKD  320 (520)
Q Consensus       250 ~-s~~p~-~~----d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l-~GprgG~I~~~~~  320 (520)
                      . .++++ ..    -+++|.++|+++|+++|+|++|. |+...+.. ..+.  +.+.-+.|++|++ +|.|.|++++++ 
T Consensus       207 pi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~-g~g~~g~~-~~~~~~~~~pdi~s~sK~l~~G~rig~v~~~~-  283 (425)
T PRK08088        207 PVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQT-GAGRTGTL-FAMEQMGVAADLTTFAKSIAGGFPLAGVTGRA-  283 (425)
T ss_pred             cccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCcch-hHHhhcCCCCCEEEEeccccCCCcceeeEecH-
Confidence            3 23333 22    38899999999999999999965 54322211 1111  1222246778998 567889999987 


Q ss_pred             CcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH----CCC-EEecCCCCC
Q 010008          321 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGY-KLVSGGSDN  395 (520)
Q Consensus       321 ~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~----~G~-~v~~~gt~~  395 (520)
                           ++.+.+.........+++.. ..++....|+......   ..+++.+..+.+.+.|.+    .+. ..+.+ . .
T Consensus       284 -----~~~~~~~~~~~~~t~~~~~~-~~~a~~~~l~~~~~~~---~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g-~-G  352 (425)
T PRK08088        284 -----EVMDAIAPGGLGGTYAGNPI-ACAAALAVLKVFEQEN---LLQKANALGEKLKDGLLAIAEKHPEIGDVRG-L-G  352 (425)
T ss_pred             -----HHHhhcCCCCCCCCCCcCHH-HHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCCCeEEEec-c-c
Confidence                 67776655443333444333 3333334566543333   333333344444444432    222 12222 2 3


Q ss_pred             eeEEEEecCC-------CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          396 HLVLVDLRPM-------GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       396 ~~~~vd~~~~-------g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      .++|+.+...       ......+.+.|.+.||.+.    |+..   .+..||++.+..    .+++|+++..+.+.+++
T Consensus       353 ~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~----~~~~---~~~~iRl~~~~~----~t~~ei~~~i~~l~~~l  421 (425)
T PRK08088        353 AMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILL----SCGP---YYNVLRILVPLT----IEDAQIRQGLEIIAQCF  421 (425)
T ss_pred             eEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEe----cCCC---CCCEEEEECCCC----cCHHHHHHHHHHHHHHH
Confidence            4566666311       1124556777778998873    3221   136899987643    34899999999999888


Q ss_pred             HH
Q 010008          469 EI  470 (520)
Q Consensus       469 ~~  470 (520)
                      ..
T Consensus       422 ~~  423 (425)
T PRK08088        422 DE  423 (425)
T ss_pred             Hh
Confidence            63

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.43  E-value=9.3e-11  Score=124.73  Aligned_cols=329  Identities=15%  Similarity=0.075  Sum_probs=173.1

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh--CC
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK  181 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al--l~  181 (520)
                      .-.|.|.+|+...+.. +..+..+. +  .++...+    ..+++++++.-..+   ..+..+||++||.+++...  ..
T Consensus        59 h~~p~v~~a~~~q~~~-~~~~~~~~-~--~~~~~~~----la~~L~~~~~~~~~---~v~f~~SGseA~e~AlklAr~~t  127 (433)
T PRK08117         59 HRHPKVVQAIKEQADK-LMHGPSGV-I--YYESILK----LAEELAEITPGGLD---CFFFSNSGAEAIEGALKLAKHVT  127 (433)
T ss_pred             CCCHHHHHHHHHHHHh-ccCccccc-c--CCHHHHH----HHHHHHHhCCCCCC---EEEEeCcHHHHHHHHHHHHHHhc
Confidence            3578888888877753 32222221 1  1222222    33677777732222   1244589999999888742  22


Q ss_pred             CCCEEEEcCCCC-Cccccccccc-----cccc--cccccceEEEEEcccC---CCCC------CCCHHHHHHHhhh----
Q 010008          182 PHDRIMGLDLPH-GGHLSHGFMT-----PKRR--VSGTSIYFESMPYRLD---ESTG------LVDYDMLEKTAIL----  240 (520)
Q Consensus       182 pGD~Vl~~~~~~-~ghls~g~~~-----~~~~--v~~~g~~~~~v~~~~d---~~~~------~iD~d~le~~i~~----  240 (520)
                      ...+|+..+-.| |.+......+     ....  ....+  +..++++-.   +...      .-|++++++.++.    
T Consensus       128 gr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  205 (433)
T PRK08117        128 KRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGS--VYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTP  205 (433)
T ss_pred             CCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCC--cEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCC
Confidence            235677776443 2221000000     0000  00001  112222210   0000      0256667776642    


Q ss_pred             cCCcEEEEcC--CCCCCCCC----HHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEeccCccc-CCC
Q 010008          241 FRPKLIIAGA--SAYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSL-RGP  310 (520)
Q Consensus       241 ~~pklIi~~~--s~~p~~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S~hK~l-~Gp  310 (520)
                      .++.+||+..  ++.+...+    +++++++|++||+++|+|++|. |+...|.. . ..+. -.|+  .|+.|.+ .|.
T Consensus       206 ~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-G~gr~G~~~~~~~~gv~pDi--~t~sK~lg~G~  282 (433)
T PRK08117        206 EEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQT-GFGRTGEWFAAQTFGVVPDI--MTIAKGIASGL  282 (433)
T ss_pred             CcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-ccCccccchhHhhcCCCCCE--eehhhhccCCC
Confidence            2455666652  22223445    8999999999999999999976 65333321 0 0111 2466  4667998 456


Q ss_pred             CceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCC--CEE
Q 010008          311 RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG--YKL  388 (520)
Q Consensus       311 rgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G--~~v  388 (520)
                      +.|++++++      ++.+.+......+..+++.. .+++...+|+.+..++   ..+++..+.+++.+.|.+..  +.+
T Consensus       283 pigav~~~~------~i~~~~~~~~~~~T~~~np~-~~aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~  352 (433)
T PRK08117        283 PLSAVVASK------ELMEQWPLGSHGTTFGGNPV-ACAAALATLEVIKEEK---LLDNANEMGAYALERLEVLKEKHPV  352 (433)
T ss_pred             cceeEEEcH------HHHhhccCCCCCCCCCcCHH-HHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            778888887      66665543333333344333 3444444677654333   34556666677777776531  222


Q ss_pred             ec--CCCCCeeEEEEecCCC-----CCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHH
Q 010008          389 VS--GGSDNHLVLVDLRPMG-----IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA  461 (520)
Q Consensus       389 ~~--~gt~~~~~~vd~~~~g-----~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la  461 (520)
                      +.  .+. ..++.+.+....     .....+.+.|.+.||.+...   |.    ....+|+..+..    ++++|++++.
T Consensus       353 ~~~vrg~-Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~---g~----~~~~lRl~p~~~----~t~~~i~~~~  420 (433)
T PRK08117        353 IGDVRGI-GLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLC---GN----AGNVLRMIPPLT----VTKEEIDEGL  420 (433)
T ss_pred             eeeeecC-CcEEEEEEecCCCCcchHHHHHHHHHHHHCCCEEeec---CC----CCCEEEEeCCcc----CCHHHHHHHH
Confidence            21  111 123344443211     11244667778899988421   11    246899986643    4589999999


Q ss_pred             HHHHHHHHH
Q 010008          462 DFIHEGVEI  470 (520)
Q Consensus       462 ~~i~~~l~~  470 (520)
                      +.|.++++.
T Consensus       421 ~~l~~~l~~  429 (433)
T PRK08117        421 DILDEALTE  429 (433)
T ss_pred             HHHHHHHHH
Confidence            999998864

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.41  E-value=2.3e-10  Score=120.51  Aligned_cols=322  Identities=15%  Similarity=0.133  Sum_probs=173.0

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC---
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---  180 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all---  180 (520)
                      .-.|.|.+|+...+.+.. .  .+..++  ++.  .+  ...+++.+++... +.   ....+|||+|+.+++....   
T Consensus        56 h~~p~v~~ai~~q~~~~~-~--~~~~~~--~~~--~~--~la~~L~~~~~~~-~~---v~f~~sGseA~e~AlklAr~~~  122 (408)
T PRK04612         56 HNDPDLVAALTEQAGKLW-H--TSNVFY--SAP--PL--KLAEELVTASRFA-EK---VFLCNSGTEANEAAIKLVRKWA  122 (408)
T ss_pred             CCCHHHHHHHHHHHHhcc-c--cccccC--CHH--HH--HHHHHHHhhCCCC-CE---EEEcCchHHHHHHHHHHHHHHH
Confidence            347888888887765321 1  111111  111  11  1235566655322 21   2446899999998876431   


Q ss_pred             ---C--CC-CEEEEcCCCCCccccccccccccccccccce-EEEEEcccCCC---CCCCCHHHHHHHhhhcCCcEEEEcC
Q 010008          181 ---K--PH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDES---TGLVDYDMLEKTAILFRPKLIIAGA  250 (520)
Q Consensus       181 ---~--pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~-~~~v~~~~d~~---~~~iD~d~le~~i~~~~pklIi~~~  250 (520)
                         .  ++ .+|+...-.|.|.     ...  .++..+.. +..-..++.+.   -...|.+.+++.+...++.+|++..
T Consensus       123 ~~~g~~~~r~~ii~~~~~yHG~-----t~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~eP  195 (408)
T PRK04612        123 SSQGRPADKRVIVTFRGSFHGR-----TLA--AVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMAGGDVAAVMLEP  195 (408)
T ss_pred             HhhCCCCCCcEEEEECCCcCCc-----cHH--HHHhcCCcccccCCCCCCCCceEcCCCCHHHHHHhhCCCCEEEEEECC
Confidence               1  22 3688777554332     110  11111110 00000001000   0123788998888653455666653


Q ss_pred             CC-CCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEEEeccCccc-CCCCceEEEeeCCCc
Q 010008          251 SA-YPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSL-RGPRGGMIFFKKDPV  322 (520)
Q Consensus       251 s~-~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S~hK~l-~GprgG~I~~~~~~~  322 (520)
                      .. .++  ..   -+++|+++|+++|+++|+|++|. |+-..+....-.. +...-+.++.|.+ .|.+.|++++++   
T Consensus       196 ~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~a~~~~~~~pdi~t~~K~l~~G~piga~~~~~---  271 (408)
T PRK04612        196 IQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQC-GMGRTGTLFAHWQEQVTPDIVTLAKALGGGFPIGAMLAGP---  271 (408)
T ss_pred             ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCCchhhhhhcCCCCCEEEEcchhcCCCceEEEEECH---
Confidence            22 112  22   28899999999999999999974 5433331100000 2222334556998 456778888887   


Q ss_pred             chhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCEEec--CCCCCeeE
Q 010008          323 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVS--GGSDNHLV  398 (520)
Q Consensus       323 ~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~v~~--~gt~~~~~  398 (520)
                         ++.+.+.........+++.. ..++...+|+.+.++   +..+++.+..+++.+.|++.  .+.++.  .|. ..+.
T Consensus       272 ---~~~~~~~~~~~~~t~~~~p~-~~aaa~a~L~~~~~~---~l~~~~~~~g~~l~~~l~~l~~~~~~i~~vrg~-Gl~~  343 (408)
T PRK04612        272 ---KVAETMQFGAHGTTFGGNPL-AAAVARVALRKLASP---QIAANVARQSAALRAGLEALNAEFGVFAQVRGR-GLML  343 (408)
T ss_pred             ---HHHhhhcCCCcCCCCCCCHH-HHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhhCCCeeeeecc-ceEE
Confidence               56665554333333444333 333333456666543   34566666777777777662  222222  121 2233


Q ss_pred             EEEecCC-CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          399 LVDLRPM-GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       399 ~vd~~~~-g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      -+.+.+. .-....+.+.|.+.||.+.    |.     ++..||+..+.    .++++|++++.+.|++++..
T Consensus       344 ~i~~~~~~~~~a~~i~~~l~~~Gvlv~----~~-----g~~~lRl~Ppl----~it~eeid~~l~~l~~~l~~  403 (408)
T PRK04612        344 GAVLAPAHAGQAGAILDLAAEHGLLLL----QA-----GPDVLRFVPAL----NLTDAELADGLARLRLALAD  403 (408)
T ss_pred             EEEecCchhhHHHHHHHHHHHCCeEEe----eC-----CCCEEEEcCCc----cCCHHHHHHHHHHHHHHHHH
Confidence            3444321 1123557778889999983    21     24689997653    36699999999999998864

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.41  E-value=1.2e-10  Score=112.37  Aligned_cols=341  Identities=17%  Similarity=0.164  Sum_probs=182.4

Q ss_pred             cceEecCCCCChHHHHHHHhhhhhccCCCCC-CC--CCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           95 SLELIASENFTSRAVMEAVGSCLTNKYSEGL-PG--KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~G~-p~--~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      .|.|..+..-.-|++.+.....+..-.++|- ..  .+ |+|.+..+.+-+...+.+.+.+|.+-..  -|+..|+|| .
T Consensus        32 ~imLggGNPa~iPem~~~f~~~~aemla~~~~~e~~cn-Y~~pQG~~~li~ala~~l~~~ygwnit~--~NIalTnGSQs  108 (417)
T COG3977          32 AIMLGGGNPARIPEMDDYFQDLLAEMLASGKATEALCN-YDGPQGKAVLIDALAKMLRREYGWNITA--QNIALTNGSQS  108 (417)
T ss_pred             ceeeCCCCcccChhHHHHHHHHHHHHHhcchHHHHHhc-CCCCcchhHHHHHHHHHHHHHhCCCCcc--ceeeecCCccc
Confidence            3555544433446666665544443333331 11  12 4444444444444456788889987432  388899999 6


Q ss_pred             HHHHHHHhh---CCCCC--EEEE-cCCCCCccccccccccccccccccceEEEE--EcccCCC---CCCCCHHHHHHHhh
Q 010008          171 ANFEVYTAI---LKPHD--RIMG-LDLPHGGHLSHGFMTPKRRVSGTSIYFESM--PYRLDES---TGLVDYDMLEKTAI  239 (520)
Q Consensus       171 A~~~~l~al---l~pGD--~Vl~-~~~~~~ghls~g~~~~~~~v~~~g~~~~~v--~~~~d~~---~~~iD~d~le~~i~  239 (520)
                      |.+.++.-+   ..-|+  +|+. +.|+|-|+-.         +-..+-.|...  .++++++   .+.+|++++.  +.
T Consensus       109 ~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d---------~~l~~d~fVs~kP~iel~~~g~FKY~vDF~~l~--i~  177 (417)
T COG3977         109 AFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYAD---------AGLEEDLFVSAKPNIELLPAGQFKYHVDFEHLH--IG  177 (417)
T ss_pred             hHHHHHHHhcCccCCCcceeEeeccChhhccccc---------cccCccceeeccCCcccccccceeeccCHHHcc--cc
Confidence            777666554   23454  3433 4566644311         11111111111  1112222   2478888875  33


Q ss_pred             hcCCcEEEEcCCCCCC--C---CCHHHHHHHHHHhCCEEEEechhhc---ccccccccCCCCCccc-EEEeccCcc-cCC
Q 010008          240 LFRPKLIIAGASAYPR--D---FDYPRMRQIADAVGALLMMDMAHIS---GLVAASVVADPFKYCD-VVTTTTHKS-LRG  309 (520)
Q Consensus       240 ~~~pklIi~~~s~~p~--~---~d~~~i~~ia~~~g~~li~D~Ah~~---gli~~~~~~~p~~~aD-iv~~S~hK~-l~G  309 (520)
                      + ++.+|+++-|.||+  +   ..+.++..+|++||+.|+.|.|+..   ++++.+..+  +=+-. +.++|++|- |+|
T Consensus       178 e-~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~--~w~~NiilC~SLSK~GLPG  254 (417)
T COG3977         178 E-STGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATP--LWNENIILCMSLSKLGLPG  254 (417)
T ss_pred             c-ccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceecccccc--cCCCCEEEEeehhhcCCCC
Confidence            4 78899999999987  3   2477888899999999999998532   223333221  11222 778999994 789


Q ss_pred             CCceEEEeeCCCcchhhHHHhhccc-----CCCCCCCCChHHHHHHHHH---HHHHhcCchh-HHHHHHHHHHHHHHHHH
Q 010008          310 PRGGMIFFKKDPVLGVELESAINNA-----VFPGLQGGPHNHTIGGLAV---CLKHAQSPEF-KVYQNKVVSNCRALASR  380 (520)
Q Consensus       310 prgG~I~~~~~~~~~~~l~~~i~~~-----~~p~~~g~p~~~~iaala~---al~~~~~~~~-~~~~~~i~~na~~l~~~  380 (520)
                      -|.|+++.++      ++.+.+...     .-|+..|.    +|++-..   .|..+.+.-. .-|.+++..-...|..+
T Consensus       255 ~R~GIiIane------~viqaitnmn~iisLap~~~G~----Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~  324 (417)
T COG3977         255 SRCGIIIANE------KVIQAITNMNGIISLAPGRMGP----AIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRY  324 (417)
T ss_pred             cceeEEEccH------HHHHHHHhccceeeecCCCccH----HHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence            9999999998      666655331     22333332    2322111   1111110000 11222222223334444


Q ss_pred             HHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCC--CCCCC--CCCCCCEEEEccCCccccCCCHHH
Q 010008          381 LVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNS--VPGDK--SALVPGGIRIGSPAMTTRGFSEKE  456 (520)
Q Consensus       381 L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~--~Pg~~--~~~~~~giRig~~~~tt~g~~~~d  456 (520)
                      |-+.-+.+..+ ...-+.|+.+....++..++++.|.+.|+.+-.+.  .||-.  -|-..-++|++..      -.++.
T Consensus       325 lp~~~~~iHkp-EGAIFlWLWf~dLPItt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~------~~~~~  397 (417)
T COG3977         325 LPEYRCLIHKP-EGAIFLWLWFKDLPITTEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRMNYV------PEPEK  397 (417)
T ss_pred             cCccceeeecC-CcceeehhhhccCCCCHHHHHHHHHhCeEEEecccccCCCCCCCCCCccceEEEecC------CCHHH
Confidence            44334444443 23445565666667889999999999999983321  23322  1223347999753      12455


Q ss_pred             HHHHHHHHHHHHH
Q 010008          457 FVAIADFIHEGVE  469 (520)
Q Consensus       457 ~~~la~~i~~~l~  469 (520)
                      ++.=..+|.+.++
T Consensus       398 ie~Gva~lae~ve  410 (417)
T COG3977         398 IEKGVAILAEEVE  410 (417)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555544443

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=99.40  E-value=2e-11  Score=123.76  Aligned_cols=228  Identities=17%  Similarity=0.157  Sum_probs=142.7

Q ss_pred             CCCCChHHHHHHHhhhhhccCCCCCCCCCCCCc-chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh
Q 010008          101 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI  179 (520)
Q Consensus       101 sen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g-~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al  179 (520)
                      +.+..++.+++++...+... .+    ..|+-+ ..+...+.. ..+.++.++|++..     +.+++-+.|+++++.++
T Consensus        35 G~s~~~~e~iea~~~~~~~~-v~----Le~~l~~g~~~~R~~~-~~~~~~~~~~aea~-----~ivnnn~aAVll~~~al  103 (395)
T COG1921          35 GRSLYSPEAIEAMKEAMRAP-VE----LETDLKTGKRGARLTE-LAELLCGLTGAEAA-----AIVNNNAAAVLLTLNAL  103 (395)
T ss_pred             CCccCCHHHHHHHHHHhccc-ce----eeeecccchhhHHHHH-HHHHHhcccchhhe-----eeECCcHHHHHHHHhhh
Confidence            55678999999988776532 21    112221 122223322 22344445555442     22345558888888888


Q ss_pred             CCCCCEEEEcCCCC-CccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCCCCC--
Q 010008          180 LKPHDRIMGLDLPH-GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG-ASAYPR--  255 (520)
Q Consensus       180 l~pGD~Vl~~~~~~-~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~-~s~~p~--  255 (520)
                      ..++..|+..-+.- |||+.-     ...+...|.  ..+.++   .++.-...+++.+|.+ ++++++=. .++|+.  
T Consensus       104 ~~~~EvVis~g~lV~gg~~~v-----~d~~~~aG~--~l~EvG---~tn~t~~~d~~~AIne-~ta~llkV~s~~~~f~~  172 (395)
T COG1921         104 AEGKEVVVSRGELVEGGAFRV-----PDIIRLAGA--KLVEVG---TTNRTHLKDYELAINE-NTALLLKVHSSNYGFTG  172 (395)
T ss_pred             ccCCeEEEEccccccCCCCCh-----hHHHHHcCC--EEEEec---ccCcCCHHHHHHHhcc-CCeeEEEEeeccccccc
Confidence            87656665443322 344321     124456676  555544   2456778888999998 88877543 566654  


Q ss_pred             CCCHHHHHHHHHHhCCEEEEechhhcccccccccCC--C-C-CcccEEEeccCcccCCCCceEEEeeCCCcchhhHHHhh
Q 010008          256 DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--P-F-KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAI  331 (520)
Q Consensus       256 ~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~--p-~-~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i  331 (520)
                      ..+.+++.+||+++|+++++|.+  +|..... .+.  + + .|+|+|++|++|.|.||++|+|++++      ++..++
T Consensus       173 ~l~~~~l~~ia~~~~lpvivD~a--Sg~~v~~-e~~l~~~la~GaDLV~~SgdKllgGPqaGii~GkK------elI~~l  243 (395)
T COG1921         173 MLSEEELVEIAHEKGLPVIVDLA--SGALVDK-EPDLREALALGADLVSFSGDKLLGGPQAGIIVGKK------ELIEKL  243 (395)
T ss_pred             cccHHHHHHHHHHcCCCEEEecC--Ccccccc-ccchhHHHhcCCCEEEEecchhcCCCccceEechH------HHHHHH
Confidence            66888999999999999999986  4432111 111  1 1 27999999999999999999999999      788777


Q ss_pred             cccCC--CCCCCCChHHHHHHHHHHHHHhcCch
Q 010008          332 NNAVF--PGLQGGPHNHTIGGLAVCLKHAQSPE  362 (520)
Q Consensus       332 ~~~~~--p~~~g~p~~~~iaala~al~~~~~~~  362 (520)
                      .+.-.  ..-.+.   ..++++..||+....++
T Consensus       244 q~~~l~Ralrv~K---~tla~l~~aLe~y~~~~  273 (395)
T COG1921         244 QSHPLKRALRVDK---ETLAALEAALELYLQPE  273 (395)
T ss_pred             HhhhhhhhhhcCc---HhHHHHHHHHHHHcCch
Confidence            54321  111222   36778888888776654

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.40  E-value=1.9e-10  Score=121.99  Aligned_cols=325  Identities=15%  Similarity=0.109  Sum_probs=176.7

Q ss_pred             ccceEecCC-----CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh
Q 010008           94 KSLELIASE-----NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG  168 (520)
Q Consensus        94 ~~i~Liase-----n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG  168 (520)
                      ..|++..+.     ...+|.|.+++...+.+..  .     ++...+..   . ...+++.+++. ..+.  + ....||
T Consensus        51 ~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~~--~-----~~~~~~~~---~-~la~~L~~~~~-~~~~--v-~~~~sG  115 (426)
T PRK00062         51 EYIDYVGSWGPMILGHAHPEVVEAVIEAAEKGL--S-----FGAPTELE---V-ELAELVIELVP-SIEM--V-RMVNSG  115 (426)
T ss_pred             EEEEcccchhhhhcCCCCHHHHHHHHHHHHhCC--c-----CCCCCHHH---H-HHHHHHHHhCC-CCCE--E-EEecCH
Confidence            446665442     1467899999888876522  1     11112211   1 23356666653 1222  2 346789


Q ss_pred             HHHHHHHHHhhCC--CCCEEEEcCCCCCcccccccccc--cccc----ccccceE-----EEEEcccCCCCCCCCHHHHH
Q 010008          169 SPANFEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTP--KRRV----SGTSIYF-----ESMPYRLDESTGLVDYDMLE  235 (520)
Q Consensus       169 s~A~~~~l~all~--pGD~Vl~~~~~~~ghls~g~~~~--~~~v----~~~g~~~-----~~v~~~~d~~~~~iD~d~le  235 (520)
                      ++|+..++.....  .+++|+..+..|.|+- .+....  ....    ...+...     ..+.++      ..|+++++
T Consensus       116 seA~e~Aik~a~~~~g~~~ii~~~~~yHG~t-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~  188 (426)
T PRK00062        116 TEATMSAIRLARGYTGRDKIIKFEGCYHGHA-DSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAP------YNDLEAVE  188 (426)
T ss_pred             HHHHHHHHHHHHHHhCCCeEEEEcCccCCch-hhhhhccCccccccCCCCCCCCCcccccceEEcC------CCCHHHHH
Confidence            9999998886532  3688999888765541 000000  0000    0000000     001111      13788998


Q ss_pred             HHhhh--cCCcEEEEc-CCCC-CCCCC----HHHHHHHHHHhCCEEEEechhhccccccccc-CCCCC-cccEEEeccCc
Q 010008          236 KTAIL--FRPKLIIAG-ASAY-PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADPFK-YCDVVTTTTHK  305 (520)
Q Consensus       236 ~~i~~--~~pklIi~~-~s~~-p~~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~~p~~-~aDiv~~S~hK  305 (520)
                      +.+..  .++.+||+. ..++ +...+    +++|+++|++||+++|+|++|. |+...+.. ...+. ..|++  +++|
T Consensus       189 ~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-G~r~g~~~~~~~~~~~pDi~--~~gK  265 (426)
T PRK00062        189 ELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMT-GFRVALGGAQGYYGVTPDLT--TLGK  265 (426)
T ss_pred             HHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechh-ccccCCccHHHHhCCCcchH--hhhh
Confidence            88754  245677776 2333 33445    8999999999999999999975 65221111 01111 24654  5679


Q ss_pred             cc-CCCCceEEEeeCCCcchhhHHHhhcc--cCCC-CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 010008          306 SL-RGPRGGMIFFKKDPVLGVELESAINN--AVFP-GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRL  381 (520)
Q Consensus       306 ~l-~GprgG~I~~~~~~~~~~~l~~~i~~--~~~p-~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L  381 (520)
                      .+ .|++.|++++++      ++.+.++.  ..+. ...+++... .++...+|+.+...   +..+++.++.+++.+.|
T Consensus       266 ~l~~G~p~ga~~~~~------~i~~~~~~~~~~~~~~T~~~~p~~-~aaa~a~L~~~~~~---~~~~~~~~~~~~~~~~l  335 (426)
T PRK00062        266 IIGGGLPVGAFGGRR------EIMEQLAPLGPVYQAGTLSGNPLA-MAAGLATLKLLKEP---GFYEELEALTKRLAEGL  335 (426)
T ss_pred             HhhCCCcceeeeEHH------HHHHhhccCCCceecccCcCCHHH-HHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHH
Confidence            98 456788888887      67776642  1111 223443333 33333467766443   34556666666676666


Q ss_pred             HH----CCCEEecCCCCCeeEEEEecCCCC---------C---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccC
Q 010008          382 VE----LGYKLVSGGSDNHLVLVDLRPMGI---------D---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSP  445 (520)
Q Consensus       382 ~~----~G~~v~~~gt~~~~~~vd~~~~g~---------~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~  445 (520)
                      ++    .++.....+ ...++-+.+.....         +   ...+.+.|.++||.+...         ....+|+.  
T Consensus       336 ~~~~~~~~~~~~vrg-~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~---------~~~~~~~~--  403 (426)
T PRK00062        336 KEAAKKAGIPLTVNR-VGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPS---------QFEAGFVS--  403 (426)
T ss_pred             HHHHHHcCCceEEEE-ecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecC---------CcCceeee--
Confidence            53    354432111 12233333322110         1   135777788899998431         11235553  


Q ss_pred             CccccCCCHHHHHHHHHHHHHHHH
Q 010008          446 AMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       446 ~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                       +   -++++|++++.+.+++++.
T Consensus       404 -~---~~t~~ei~~~~~~l~~~l~  423 (426)
T PRK00062        404 -A---AHTDEDIEKTLEAARKAFA  423 (426)
T ss_pred             -c---cCCHHHHHHHHHHHHHHHH
Confidence             1   2578999999999998875

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.39  E-value=1.7e-10  Score=122.31  Aligned_cols=325  Identities=18%  Similarity=0.131  Sum_probs=173.0

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC----
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  180 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all----  180 (520)
                      -.|.|.+|+.+.+... ...... .|.  ++   ...+ ..+++.+++.-..+.   ....+||++|+.+++....    
T Consensus        59 ~~p~v~~ai~~q~~~~-~~~~~~-~~~--~~---~~~~-la~~l~~~~p~~~~~---v~f~~sGseA~e~A~klar~~~~  127 (423)
T PRK05964         59 NHPYIDQAIREQLDRL-DHVIFA-GFT--HE---PAER-LAQRLVALTPGGLDH---VFFSDSGSVAVEVALKMALQYWR  127 (423)
T ss_pred             CCHHHHHHHHHHHhhC-CCcccc-ccC--CH---HHHH-HHHHHHHhCCCCCCE---EEEeCCcHHHHHHHHHHHHHHHH
Confidence            4688888887776532 110000 011  11   1122 335677776422221   2346899999998876431    


Q ss_pred             ---CCC-CEEEEcCCCCCccccccccccc-ccc---ccccc--eEEEEEcccCCCCCCCCHHHHHHHhhhc--CCcEEEE
Q 010008          181 ---KPH-DRIMGLDLPHGGHLSHGFMTPK-RRV---SGTSI--YFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIA  248 (520)
Q Consensus       181 ---~pG-D~Vl~~~~~~~ghls~g~~~~~-~~v---~~~g~--~~~~v~~~~d~~~~~iD~d~le~~i~~~--~pklIi~  248 (520)
                         ++| .+|+...-.|.|.. .+..... ...   .+.+.  ....++++.+ +....+++++++.+.+.  +..+||+
T Consensus       128 ~~~~~~r~~ii~~~~~yHG~t-~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~l~~~l~~~~~~iaavi~  205 (423)
T PRK05964        128 NRGEPGRSRFLSLRGGYHGDT-IGTMSVGDRGGMHALYTPLLFEQVTAPFPPD-GYEQATLDALEALLEKHAGEIAAFIV  205 (423)
T ss_pred             hcCCCCCcEEEEEcCCcCCcc-HHHHhcCCCccccccccCcCCCCEEeCCCcc-hhHHHHHHHHHHHHHhCCCcEEEEEE
Confidence               133 57888776553321 1100000 000   00000  0122222211 00112377888888642  3446666


Q ss_pred             cC--CCCCC-----CCCHHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEeccCcccCCC--CceEEE
Q 010008          249 GA--SAYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRGP--RGGMIF  316 (520)
Q Consensus       249 ~~--s~~p~-----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S~hK~l~Gp--rgG~I~  316 (520)
                      ..  ...++     ...+++|+++|++||+++|+|++| .|+...|.. . .... ..|+++++  |+|.|.  +.|+++
T Consensus       206 Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~-tg~gr~G~~~a~~~~~v~pDi~~~~--K~l~gG~~p~~av~  282 (423)
T PRK05964        206 EPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIA-TGFGRTGTLFACEQAGVSPDIMCLS--KGLTGGYLPLAATL  282 (423)
T ss_pred             ecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechh-hCCCcCcchhHHHhcCCCCCeeeee--hhhhcCcccceEEE
Confidence            53  22222     224889999999999999999998 454322211 0 0011 35777654  999553  568888


Q ss_pred             eeCCCcchhhHHHhhccc------CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEe
Q 010008          317 FKKDPVLGVELESAINNA------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLV  389 (520)
Q Consensus       317 ~~~~~~~~~~l~~~i~~~------~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~  389 (520)
                      +++      ++.+.+...      ...+..++ +...+++...+++.+..++   ..+++.++.+.+.+.|++. +++.+
T Consensus       283 ~~~------~i~~~~~~~~~~~~~~~~~T~~~-np~~~aaa~a~l~~l~~~~---~~~~~~~~g~~l~~~l~~l~~~~~i  352 (423)
T PRK05964        283 CTA------EIFEAFYSDDRAKAFMHSPSYTA-NPLACAAANASLDLFEDEP---VLERVAALSAGLAEGLEPFRDLPGV  352 (423)
T ss_pred             EcH------HHHHhhhcCCcccccccCCCCCc-CHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhhccCCCe
Confidence            877      666665321      11122223 3334444444677654433   4566666777788877663 33322


Q ss_pred             cCC-CCCeeEEEEecCCCC--CHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          390 SGG-SDNHLVLVDLRPMGI--DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       390 ~~g-t~~~~~~vd~~~~g~--~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      ... ....++.+.+.....  ....+.+.|.+.||.+...          ...||++.+..    ++++|++++.+.+++
T Consensus       353 ~~vrg~Gl~~~i~l~~~~~~~~~~~l~~~l~~~Gv~v~~~----------~~~lR~~p~l~----~t~edId~~v~~l~~  418 (423)
T PRK05964        353 ADVRVLGAIGAVELDRPVLERDGPALRAFALERGVLLRPL----------GNTIYLMPPYI----ITAEELDRITDAIVE  418 (423)
T ss_pred             EEeecccEEEEEEeccCcchhHHHHHHHHHHHCCeEEEec----------CCEEEEeCCcc----cCHHHHHHHHHHHHH
Confidence            210 122344455532210  1456778888999998421          24799987644    458999999999998


Q ss_pred             HHH
Q 010008          467 GVE  469 (520)
Q Consensus       467 ~l~  469 (520)
                      +++
T Consensus       419 al~  421 (423)
T PRK05964        419 VAD  421 (423)
T ss_pred             HHh
Confidence            875

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.39  E-value=4e-10  Score=116.71  Aligned_cols=302  Identities=15%  Similarity=0.118  Sum_probs=168.8

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-CCC
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKP  182 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al-l~p  182 (520)
                      .-.|.|.+|+...+.+...   .+..|.  ++...+++    ++++++++.+.     -+..+|||+|+.+++... ..+
T Consensus        40 h~~p~v~~ai~~ql~~~~~---~~~~~~--~~~~~~la----~~l~~~~~~~~-----v~~~~SGseA~e~Alklar~~~  105 (364)
T PRK04013         40 HNHPEWVEEMSEQLEKLVV---AGPMFE--HEEKEEML----EELSKWVNYEY-----VYMGNSGTEAVEAALKFARLYT  105 (364)
T ss_pred             CCCHHHHHHHHHHHHhcCC---ccCCcC--CHHHHHHH----HHHHhhcCCCE-----EEEeCchHHHHHHHHHHHHHHh
Confidence            3468888888887765321   111222  22222222    56777777653     245689999999888754 345


Q ss_pred             C-CEEEEcCCCCCccccccccccccccccccc-----eEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-CCC
Q 010008          183 H-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-----YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-YPR  255 (520)
Q Consensus       183 G-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~-----~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~-~p~  255 (520)
                      | ++|+..+..|.|... +      .+...+.     .+.+...++... -..|.+.+++.+.+ ++.+|++.... ..+
T Consensus       106 gr~~Ii~~~~syHG~t~-~------~ls~~~~~~~~~~~~p~~~~~~~~-~~~d~~~l~~~i~~-~~aAvivEpi~g~gG  176 (364)
T PRK04013        106 GRKEIIAMTNAFHGRTM-G------ALSATWKPKYREDFEPLVPGFKHI-PFNDVEAAKEAITK-ETAAVIFEPIQGEGG  176 (364)
T ss_pred             CCCEEEEECCccccCch-h------hccCCCCcccccCCCCCCCCcEEe-cCCCHHHHHHHhcC-CcEEEEEcCCcCCCC
Confidence            6 899998876544311 1      1111110     011110011100 12377889988876 78888886322 222


Q ss_pred             --CCC---HHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEeccCcccCC-CCceEEEeeCCCcchhh
Q 010008          256 --DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKDPVLGVE  326 (520)
Q Consensus       256 --~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S~hK~l~G-prgG~I~~~~~~~~~~~  326 (520)
                        ..|   +++++++|+++|+++|.|+++. |+ -.|.. . .-+. ..|+++++  |.+.| -..|.++.++      +
T Consensus       177 ~~~~~~~yl~~lr~lc~~~gillI~DEv~t-G~-RtG~~~a~~~~gv~PDiv~~g--K~lggG~P~~a~~~~~------~  246 (364)
T PRK04013        177 IVPAKEEFVKTLRDLTEDVGALLIADEVQS-GL-RTGKFLAIEHYKVEPDIVTMG--KGIGNGVPVSLTLTNF------D  246 (364)
T ss_pred             CcCCCHHHHHHHHHHHHHcCCEEEEechhh-cC-CCCchhHHHhcCCCCCEEEec--ccccCCceeEEEEecc------c
Confidence              445   8999999999999999999975 54 33321 0 1111 46888885  99854 3346666665      3


Q ss_pred             HHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecC--CCCCeeEEEEecC
Q 010008          327 LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG--GSDNHLVLVDLRP  404 (520)
Q Consensus       327 l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~--gt~~~~~~vd~~~  404 (520)
                      +    .......+.++......++++ .|+.+.++++.+.+++       ..+.|..   +.+..  |. .-+.-+.+..
T Consensus       247 ~----~~~~~~~T~~gnp~~~aaa~a-~l~~i~~~~l~~~~~~-------~l~~l~~---~~v~~vRG~-Gl~~gve~~~  310 (364)
T PRK04013        247 V----ERGKHGSTFGGNPLACKAVAV-TLRILRRERLVEKAGE-------KFIEIKG---ERVVTTRGR-GLMIGIVLKK  310 (364)
T ss_pred             c----cCCCcCCCCCcCHHHHHHHHH-HHHHHHhccHHHHHHH-------HHHHhcc---CcceeeeeC-cEEEEEEeCC
Confidence            3    111222334443444444443 5776655444222222       1123322   11211  11 2233345532


Q ss_pred             CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          405 MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       405 ~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                         ....+.+.+.+.|+.+...         +...+|+.. .++   ++++|++++.+.|++++..
T Consensus       311 ---~~~~i~~~~~~~Gll~~~~---------g~~vlr~~P-pl~---it~~~i~~~~~~l~~~l~~  360 (364)
T PRK04013        311 ---PVGKYVEELQNRGYLVHTA---------GQRVIRLLP-PLI---ISKDTMEEAKSAIEGVIND  360 (364)
T ss_pred             ---cHHHHHHHHHhCCcEEeeC---------CCCEEEEeC-Ccc---cCHHHHHHHHHHHHHHHHH
Confidence               2355777788899998421         235799964 455   6799999999999999864

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=99.38  E-value=1.7e-10  Score=125.62  Aligned_cols=280  Identities=18%  Similarity=0.143  Sum_probs=167.3

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC--
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--  181 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~--  181 (520)
                      +++++++-.+...+.|....      .+...+....+|..+.+++++++|.+. .|+.  .+++||.||+.++.+.-+  
T Consensus        94 ~~~paila~~~a~~~N~n~~------~~e~SP~~t~lE~~vi~~la~l~G~~~-~~G~--~TsGGT~ANl~aL~~AR~~k  164 (608)
T TIGR03811        94 TLMPAILAYNYAMLWNGNNV------AYESSPATSQMEEEVGKEFATLMGYKN-GWGH--IVADGSLANLEGLWYARNIK  164 (608)
T ss_pred             CCHHHHHHHHHHHHhCCCCC------ccccCchHHHHHHHHHHHHHHHhCCCC-CCeE--EeCChHHHHHHHHHHHHHhh
Confidence            34566654443333343211      122334567899999999999999986 4654  346677999876654311  


Q ss_pred             --C-----C------------------C-------------------------------EEEEcCCCCCccccccccccc
Q 010008          182 --P-----H------------------D-------------------------------RIMGLDLPHGGHLSHGFMTPK  205 (520)
Q Consensus       182 --p-----G------------------D-------------------------------~Vl~~~~~~~ghls~g~~~~~  205 (520)
                        |     +                  |                               +|+++.   .+|+|.     .
T Consensus       165 ~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~---~aHyS~-----~  236 (608)
T TIGR03811       165 SLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQ---TKHYSW-----L  236 (608)
T ss_pred             hccchhhhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECC---CccHHH-----H
Confidence              0     0                  0                               233222   223322     1


Q ss_pred             cccccccceE-EEEEcccCCCCCCCCHHHHHHHhhhc----CC-cEEEEc--CCCCCCCCCHHHHHHHH---HHhCC--E
Q 010008          206 RRVSGTSIYF-ESMPYRLDESTGLVDYDMLEKTAILF----RP-KLIIAG--ASAYPRDFDYPRMRQIA---DAVGA--L  272 (520)
Q Consensus       206 ~~v~~~g~~~-~~v~~~~d~~~~~iD~d~le~~i~~~----~p-klIi~~--~s~~p~~~d~~~i~~ia---~~~g~--~  272 (520)
                      |...+.|.+. .++.+++| +++.+|+++|++.+.+.    .| -+|+..  .+..+...|+++|.++|   +++|+  |
T Consensus       237 KAa~ilGlG~~~vv~VpvD-~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~  315 (608)
T TIGR03811       237 KAADIIGIGLDQVIPVPVD-SNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFY  315 (608)
T ss_pred             HHHHHcCCCcccEEEeecC-CCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCcee
Confidence            3455566542 35567777 57899999999888642    23 234433  34444588999999998   66888  6


Q ss_pred             EEEechhhcccc---cccc-------------------c--------C------CCCCcccEEEeccCcccCCCCc-eEE
Q 010008          273 LMMDMAHISGLV---AASV-------------------V--------A------DPFKYCDVVTTTTHKSLRGPRG-GMI  315 (520)
Q Consensus       273 li~D~Ah~~gli---~~~~-------------------~--------~------~p~~~aDiv~~S~hK~l~Gprg-G~I  315 (520)
                      +++|+|+. |..   ..+.                   +        +      ..++.+|-++..+||++.-|-+ |++
T Consensus       316 lHVDAAyG-G~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~l  394 (608)
T TIGR03811       316 LHVDAAYG-GYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGI  394 (608)
T ss_pred             Eeeecccc-chhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEE
Confidence            99999854 421   1110                   0        0      0134799999999999877877 888


Q ss_pred             EeeCCCcchhhHHHhhcc---------cCCC------CCCCCChHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHH
Q 010008          316 FFKKDPVLGVELESAINN---------AVFP------GLQGGPHNHTIGGLAVCLKHA--QSPEFKVYQNKVVSNCRALA  378 (520)
Q Consensus       316 ~~~~~~~~~~~l~~~i~~---------~~~p------~~~g~p~~~~iaala~al~~~--~~~~~~~~~~~i~~na~~l~  378 (520)
                      ++++.     .+.+.+..         ...|      +..|+..-...+++..+++.+  ...+|.++.++..++++++.
T Consensus       395 l~Rd~-----~~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~  469 (608)
T TIGR03811       395 VIQDI-----RMRDVISYFATYVFEKGADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFY  469 (608)
T ss_pred             EEeCH-----HHHHHHhcCcchhccccccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            88875     33222211         0011      112332223345566677765  45678999999999999999


Q ss_pred             HHHHHCC-------CEE--ecCCCCCeeEEEEecCCCCC
Q 010008          379 SRLVELG-------YKL--VSGGSDNHLVLVDLRPMGID  408 (520)
Q Consensus       379 ~~L~~~G-------~~v--~~~gt~~~~~~vd~~~~g~~  408 (520)
                      +.|.+.+       +++  +.+ .+-+++.+.+.+.+.+
T Consensus       470 ~~L~~~~~~~~~~~~el~~~~~-pdlniV~Fr~~~~g~~  507 (608)
T TIGR03811       470 DFLNNLEFKVGDKEIEVHPLTK-PDFNMVDYVFNEKGND  507 (608)
T ss_pred             HHHHhcccccCCCCeeEEecCC-CCcceEEEEEecCCCc
Confidence            9998743       444  333 2344455555555543

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.38  E-value=1.1e-09  Score=115.99  Aligned_cols=328  Identities=14%  Similarity=0.109  Sum_probs=173.5

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC-CCCCceeeecCChHHHHHHHHHhh-CC
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAI-LK  181 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~-~~~~~~~V~~~sGs~A~~~~l~al-l~  181 (520)
                      .-.|.|.+|+...+.. +.  +....++. ++  ..+ +++ +++.+++... .+.   .+..+|||+|+.+++... .-
T Consensus        56 h~~p~v~~ai~~ql~~-~~--~~~~~~~~-~~--~~~-~la-~~l~~~~p~~~~~~---~~f~~sGseA~e~AlklAr~~  124 (421)
T PRK09792         56 HRHPDLVAAVEQQLQQ-FT--HTAYQIVP-YE--SYV-TLA-EKINALAPVSGQAK---TAFFTTGAEAVENAVKIARAH  124 (421)
T ss_pred             CCCHHHHHHHHHHHHh-cc--CcccCccC-CH--HHH-HHH-HHHHHhCCCCCCce---EEEeCChHHHHHHHHHHHHHh
Confidence            3478888888777653 21  11100111 11  112 223 4566665421 121   244579999999877643 22


Q ss_pred             CC-CEEEEcCCCCCccccccccc-------cccccccccceEEEEEcccCCCCCC---CCHHHHHHHhhh----cCCcEE
Q 010008          182 PH-DRIMGLDLPHGGHLSHGFMT-------PKRRVSGTSIYFESMPYRLDESTGL---VDYDMLEKTAIL----FRPKLI  246 (520)
Q Consensus       182 pG-D~Vl~~~~~~~ghls~g~~~-------~~~~v~~~g~~~~~v~~~~d~~~~~---iD~d~le~~i~~----~~pklI  246 (520)
                      .| .+|+...-.|.|.- .+...       ......-....+..++++.+. .+.   -|++.+++.+..    .++.+|
T Consensus       125 tgr~~ii~~~~~yHG~t-~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~-~~~~~~~~~~~l~~~~~~~~~~~~iaav  202 (421)
T PRK09792        125 TGRPGVIAFSGGFHGRT-YMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDL-HGISTQDSLDAIERLFKSDIEAKQVAAI  202 (421)
T ss_pred             cCCCeEEEECCCcCCcc-HHHHhhcCCCcccccCCCCCCCCcEEcCCCccc-ccccHHHHHHHHHHHHHhccCCCceEEE
Confidence            33 57888776543331 01000       000000000011233443321 111   134778887752    256788


Q ss_pred             EEcCCCCCC---CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC----cccEEEeccCccc-CCCCceEE
Q 010008          247 IAGASAYPR---DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSL-RGPRGGMI  315 (520)
Q Consensus       247 i~~~s~~p~---~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~----~aDiv~~S~hK~l-~GprgG~I  315 (520)
                      ++....+++   ..+   +++|+++|+++|+++|+|+.+. |+...+.. ..+.    ..|+++  +.|+| +|.+.|++
T Consensus       203 i~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-g~gr~G~~-~a~~~~~~~pDi~t--~gK~l~~G~pigav  278 (421)
T PRK09792        203 IFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQS-GFARTGKL-FAMDHYADKPDLMT--MAKSLAGGMPLSGV  278 (421)
T ss_pred             EEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCCCCch-hHHHhcCCCCcEEE--eehhhcCCCceEEE
Confidence            887544432   335   8899999999999999999854 44333321 1111    357654  46998 45778999


Q ss_pred             EeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCEEecCCC
Q 010008          316 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVSGGS  393 (520)
Q Consensus       316 ~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~v~~~gt  393 (520)
                      ++++      ++.+.+.........+++.....++++ .++.+.+.+   ..+++.+..+.+.+.|++.  .+..+...+
T Consensus       279 ~~~~------~i~~~~~~~~~~~T~~gnpl~~aaa~a-~l~~l~~~~---~~~~~~~~g~~l~~~l~~l~~~~p~v~~vr  348 (421)
T PRK09792        279 VGNA------NIMDAPAPGGLGGTYAGNPLAVAAAHA-VLNIIDKES---LCERANQLGQRLKNTLIDAKESVPAIAAVR  348 (421)
T ss_pred             EEcH------HHHhccCCCCcCCCCCCCHHHHHHHHH-HHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHhCCCcceec
Confidence            9987      676665443333334444444444444 455554332   3444445555555555431  122222111


Q ss_pred             -CCeeEEEEecCCC------CCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          394 -DNHLVLVDLRPMG------IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       394 -~~~~~~vd~~~~g------~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                       ...++++.+....      .....+.+.+.+.||.+.    +..  . ....||+..+. +   ++++|+++..+++.+
T Consensus       349 G~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~----~~g--~-~~~~irl~P~l-~---i~~~ei~~~~~~l~~  417 (421)
T PRK09792        349 GLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLL----TCG--A-YGNVIRFLYPL-T---IPDAQFDAAMKILQD  417 (421)
T ss_pred             ccceEEEEEecCCccCCcchHHHHHHHHHHHHCCcEEe----ecC--C-CCCEEEEeCCC-c---CCHHHHHHHHHHHHH
Confidence             1345566664221      123456677778999983    111  1 24689997554 2   458999999999988


Q ss_pred             HHH
Q 010008          467 GVE  469 (520)
Q Consensus       467 ~l~  469 (520)
                      ++.
T Consensus       418 ~l~  420 (421)
T PRK09792        418 ALS  420 (421)
T ss_pred             HHh
Confidence            874

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.36  E-value=1e-09  Score=112.83  Aligned_cols=316  Identities=18%  Similarity=0.137  Sum_probs=176.7

Q ss_pred             hHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh--CCCC
Q 010008          106 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPH  183 (520)
Q Consensus       106 ~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al--l~pG  183 (520)
                      +|.|.+|+...+.+..+.|.|.           ++|-...+.+.+++..-. .|  . .++|||+|++.+++..  .---
T Consensus        71 ~p~V~~Av~~~l~~G~~fg~Pt-----------e~Ei~~Aell~~~~p~~e-~v--r-fvnSGTEAtmsAiRlARa~TgR  135 (432)
T COG0001          71 HPAVVEAVQEQLERGLSFGAPT-----------ELEVELAELLIERVPSIE-KV--R-FVNSGTEATMSAIRLARAYTGR  135 (432)
T ss_pred             CHHHHHHHHHHHHhcCCCCCCC-----------HHHHHHHHHHHHhcCccc-EE--E-EecchhHHHHHHHHHHHHhhCC
Confidence            6889999999998887777665           334445578888887732 22  2 2589999999887643  2235


Q ss_pred             CEEEEcCCCCCccccccccccccc------cccccceE----EEEEcccCCCCCCCCHHHHHHHhhhc--CCcEEEEcC-
Q 010008          184 DRIMGLDLPHGGHLSHGFMTPKRR------VSGTSIYF----ESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGA-  250 (520)
Q Consensus       184 D~Vl~~~~~~~ghls~g~~~~~~~------v~~~g~~~----~~v~~~~d~~~~~iD~d~le~~i~~~--~pklIi~~~-  250 (520)
                      |+|+..+-+|.||......-....      ....|..-    ..+.++      .-|++.++++++..  +...||+.. 
T Consensus       136 ~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~------yND~~al~~~~~~~g~~IAaVIvEPv  209 (432)
T COG0001         136 DKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLP------YNDLEALEEAFEEYGDDIAAVIVEPV  209 (432)
T ss_pred             CeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEec------CCCHHHHHHHHHHcCCcEEEEEeccc
Confidence            889988877766632211100000      00111100    111111      24889999999875  345677652 


Q ss_pred             -CCCCC----CCCHHHHHHHHHHhCCEEEEechhhcccc-cccccCCCCC-cccEEEeccCcccC-CCCceEEEeeCCCc
Q 010008          251 -SAYPR----DFDYPRMRQIADAVGALLMMDMAHISGLV-AASVVADPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDPV  322 (520)
Q Consensus       251 -s~~p~----~~d~~~i~~ia~~~g~~li~D~Ah~~gli-~~~~~~~p~~-~aDiv~~S~hK~l~-GprgG~I~~~~~~~  322 (520)
                       .|.+.    .--++.|+++|+++|++||.|+.+. |+- ..+-...-+. ..|+.+.+  |.+. |...|.+-+++   
T Consensus       210 ~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViT-GFR~~~gGaq~~~gi~PDlttlG--KiIGGGlP~ga~gGr~---  283 (432)
T COG0001         210 AGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVIT-GFRVALGGAQGYYGVEPDLTTLG--KIIGGGLPIGAFGGRA---  283 (432)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchh-hcccCCcccccccCcCcchhhhh--hhhcCCcceeeeccHH---
Confidence             23232    2237899999999999999999853 322 1111111111 35777665  9884 45668888888   


Q ss_pred             chhhHHHhhcccC--C-CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH----HCCCEEecCCCCC
Q 010008          323 LGVELESAINNAV--F-PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLV----ELGYKLVSGGSDN  395 (520)
Q Consensus       323 ~~~~l~~~i~~~~--~-p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~----~~G~~v~~~gt~~  395 (520)
                         ++.+.+...-  + .++..+ +..+++|-.++++++.+.+  ...+++.+..+.|.+.|+    +.|+++......+
T Consensus       284 ---eiM~~~~p~g~vyqaGT~sg-nplamaAG~atl~~l~~~~--~~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gs  357 (432)
T COG0001         284 ---EIMEQLAPLGPVYQAGTLSG-NPLAMAAGLATLEELMTEE--GVYERLDALGERLAEGLRAAAERHGIPLTVNRVGS  357 (432)
T ss_pred             ---HHHhhhCCCCCccccCCCCC-cHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecc
Confidence               6777665432  1 111122 2234444445787776521  122444444555655554    4677765432222


Q ss_pred             eeEEEEecCC---CC------CH---HHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHH
Q 010008          396 HLVLVDLRPM---GI------DG---ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF  463 (520)
Q Consensus       396 ~~~~vd~~~~---g~------~~---~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~  463 (520)
                      .+.+ -+...   +.      +.   ..+...|.+.||.+.    |+.   +.  ..=+|      .-++++|+++..++
T Consensus       358 m~~i-~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~GV~l~----ps~---~e--a~flS------~ahte~di~~~~~a  421 (432)
T COG0001         358 MFGI-FFTEEGVRNYADAKRSDVERFAKFFHHLLNRGVYLA----PSQ---FE--AGFLS------TAHTEEDIDRTLEA  421 (432)
T ss_pred             eEEE-EecCCCCCCHHHHHhhchHHHHHHHHHHHhCCcccC----Ccc---cc--ceeee------cccCHHHHHHHHHH
Confidence            2222 22221   10      11   123346678899883    321   11  11122      33679999999999


Q ss_pred             HHHHHHH
Q 010008          464 IHEGVEI  470 (520)
Q Consensus       464 i~~~l~~  470 (520)
                      ++++++.
T Consensus       422 ~~~~~~~  428 (432)
T COG0001         422 ADEAFKE  428 (432)
T ss_pred             HHHHHHH
Confidence            9987764

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.35  E-value=2.1e-09  Score=115.95  Aligned_cols=324  Identities=14%  Similarity=0.099  Sum_probs=170.7

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC-CCCCCCceeeecCChHHHHHHHHHhhC--
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN-LDENKWGVNVQPLSGSPANFEVYTAIL--  180 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg-~~~~~~~~~V~~~sGs~A~~~~l~all--  180 (520)
                      .-.|.|.+|+...+.. +......  +...++...++    .+++.+++. .+.+.   ....+||++||.+++....  
T Consensus       105 h~hp~v~~Av~~ql~~-~~~~~~~--~~~~~~~~~~l----ae~L~~~~~~~~~~~---v~f~~SGsEA~e~AlKlAr~~  174 (504)
T PLN02760        105 GSEPRLVAAATEQLNK-LPFYHSF--WNRTTKPSLDL----AKELLEMFTARKMGK---VFFTNSGSEANDTQVKLVWYY  174 (504)
T ss_pred             CCCHHHHHHHHHHHhh-ccceecc--cccCcHHHHHH----HHHHHhhcCCCCCCE---EEEeCChHHHHHHHHHHHHHH
Confidence            3479999999888753 2211110  01112222222    256666653 22221   2346899999998887652  


Q ss_pred             -----CCC-CEEEEcCCCCCccccccccccccccccccce------------EEEEEcccC-----CCCC-----CCCHH
Q 010008          181 -----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY------------FESMPYRLD-----ESTG-----LVDYD  232 (520)
Q Consensus       181 -----~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~------------~~~v~~~~d-----~~~~-----~iD~d  232 (520)
                           ++| .+|+..+-.|.|.. .+      .+++.|..            +..+++|..     +...     ...++
T Consensus       175 ~~~~g~~~r~~iI~~~~~yHG~t-~~------a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  247 (504)
T PLN02760        175 NNALGRPNKKKFIARSKSYHGST-LI------SASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLAD  247 (504)
T ss_pred             HHhcCCCCCcEEEEECCCccCCh-Hh------hhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHH
Confidence                 233 57887775543321 11      11112210            111111100     0000     01124


Q ss_pred             HHHHHhhh---cCCcEEEEcC--CCCCCCCC----HHHHHHHHHHhCCEEEEechh-hcccccccccCCCCC-cccEEEe
Q 010008          233 MLEKTAIL---FRPKLIIAGA--SAYPRDFD----YPRMRQIADAVGALLMMDMAH-ISGLVAASVVADPFK-YCDVVTT  301 (520)
Q Consensus       233 ~le~~i~~---~~pklIi~~~--s~~p~~~d----~~~i~~ia~~~g~~li~D~Ah-~~gli~~~~~~~p~~-~aDiv~~  301 (520)
                      ++++++..   .++.+||+..  .+.+...+    +++|+++|+++|+++|+|++| ..|-........-+. -.|++++
T Consensus       248 ~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl  327 (504)
T PLN02760        248 NLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSL  327 (504)
T ss_pred             HHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCCcEEEe
Confidence            56766642   1345666652  22222444    999999999999999999997 344332110000011 2688776


Q ss_pred             ccCcccCCC--CceEEEeeCCCcchhhHHHhhccc-------CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010008          302 TTHKSLRGP--RGGMIFFKKDPVLGVELESAINNA-------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVS  372 (520)
Q Consensus       302 S~hK~l~Gp--rgG~I~~~~~~~~~~~l~~~i~~~-------~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~  372 (520)
                      +  |.++|.  ..|.+++++      ++.+.+...       ...++.++......++++ +|+.+.++   +..+++.+
T Consensus       328 g--K~lggG~~PigAv~~~~------~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala-~Le~i~~~---~l~~~~~~  395 (504)
T PLN02760        328 A--KALSSAYMPIGAVLVSP------EISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALE-ALKIYKER---NIPEHVNK  395 (504)
T ss_pred             c--ccccCCccccceEeecH------HHHhhhhcccccccCcccCCCCCCCHHHHHHHHH-HHHHHHhC---CHHHHHHH
Confidence            5  999652  355577776      566655321       122344554444444443 57766543   34666777


Q ss_pred             HHHHHHHHHHHC-CCEEecC--CCCCeeEEEEecCCC-----C--C---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCE
Q 010008          373 NCRALASRLVEL-GYKLVSG--GSDNHLVLVDLRPMG-----I--D---GARVEKILDMASITLNKNSVPGDKSALVPGG  439 (520)
Q Consensus       373 na~~l~~~L~~~-G~~v~~~--gt~~~~~~vd~~~~g-----~--~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~g  439 (520)
                      +.++|.+.|++. ...++..  |. .-+.-+.+....     .  +   ...+.+.|.+.||.+...          ...
T Consensus       396 ~g~~l~~~L~~l~~~~~v~~vrG~-Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~----------g~~  464 (504)
T PLN02760        396 IAPRFQDGIKAFSGSPIIGEIRGT-GLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVA----------GDN  464 (504)
T ss_pred             HHHHHHHHHHHHhcCCCeeeEEeC-ceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEec----------CCE
Confidence            777787777652 1222221  11 122333442211     0  0   234667778899998421          246


Q ss_pred             EEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          440 IRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       440 iRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      +|++.| ++   ++++|++++.+++++++...
T Consensus       465 lrl~Pp-l~---it~eeid~~~~~l~~al~~~  492 (504)
T PLN02760        465 IMMSPP-LI---ITPEEVDELISIYGKALKAT  492 (504)
T ss_pred             EEEECC-CC---CCHHHHHHHHHHHHHHHHHH
Confidence            899765 33   56999999999999988643

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.35  E-value=5.5e-09  Score=110.69  Aligned_cols=329  Identities=17%  Similarity=0.124  Sum_probs=174.0

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh--CC
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK  181 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al--l~  181 (520)
                      .-.|.|.+|+...+.+.. .  ....++ .++   ...+ ..+++.+++.-...+  -.+..+|||+|+.+++...  ..
T Consensus        56 h~~p~v~~ai~~ql~~l~-~--~~~~~~-~~~---~~~~-la~~l~~~~p~~~~~--~v~f~~SGseA~e~AlklAr~~t  125 (425)
T PRK07495         56 HRHPRVIAAVKAQLDRFT-H--TCHQVV-PYE---NYVR-LAERLNALVPGDFAK--KTIFVTTGAEAVENAVKIARAAT  125 (425)
T ss_pred             CCCHHHHHHHHHHHhhcc-C--cccCcc-CCH---HHHH-HHHHHHHhCCCCCCC--EEEECCchHHHHHHHHHHHHHhh
Confidence            356888888877765421 1  100001 111   1122 335677776432111  1245689999999887643  22


Q ss_pred             CCCEEEEcCCCCCccccccccc-------cccccccccceEEEEEcccCCCCCCCC----HHHHHHHhhh----cCCcEE
Q 010008          182 PHDRIMGLDLPHGGHLSHGFMT-------PKRRVSGTSIYFESMPYRLDESTGLVD----YDMLEKTAIL----FRPKLI  246 (520)
Q Consensus       182 pGD~Vl~~~~~~~ghls~g~~~-------~~~~v~~~g~~~~~v~~~~d~~~~~iD----~d~le~~i~~----~~pklI  246 (520)
                      ...+|+...-.|.|.- .+...       ......-.-..+..++++.+. . ..+    ++++++.+..    .+..+|
T Consensus       126 gr~~ii~~~~~yHG~t-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-g~~~~~~~~~l~~~~~~~~~~~~iaav  202 (425)
T PRK07495        126 GRSAVIAFGGGFHGRT-FMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVEL-H-GVSVEQSLAALDKLFKADVDPQRVAAI  202 (425)
T ss_pred             CCCeEEEECCCcCCcc-HHHhhhcCCCcccccCCCCCCCCeEEecCCccc-c-cccHHHHHHHHHHHHHhccCCCceEEE
Confidence            3457887775543321 01000       000000000011233333221 1 122    4455666542    246777


Q ss_pred             EEcCC-CCCC-C----CCHHHHHHHHHHhCCEEEEechhhccccccccc--CCCCC-cccEEEeccCccc-CCCCceEEE
Q 010008          247 IAGAS-AYPR-D----FDYPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSL-RGPRGGMIF  316 (520)
Q Consensus       247 i~~~s-~~p~-~----~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~--~~p~~-~aDiv~~S~hK~l-~GprgG~I~  316 (520)
                      |+... .+.+ .    .-+++|+++|+++|+++|+|++|. |+-..+..  ...+. -.|++++  .|.+ .|.+.|+++
T Consensus       203 i~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~a~~~~gv~pDi~tl--sK~l~~G~pigav~  279 (425)
T PRK07495        203 IIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQT-GFARTGKLFAMEHHEVAADLTTM--AKGLAGGFPLAAVT  279 (425)
T ss_pred             EECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-cCCcCCCceeecccCCCCCEEee--hhhhcCCccceEEE
Confidence            77622 2222 1    237899999999999999999964 65333321  01111 2466555  5998 456779999


Q ss_pred             eeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCEEecC--C
Q 010008          317 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVSG--G  392 (520)
Q Consensus       317 ~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~v~~~--g  392 (520)
                      +++      ++.+.+.........+++.....+++ ++++.+.+.+   +.+++.+..++|.+.|++.  .+..+..  |
T Consensus       280 ~~~------~i~~~~~~~~~~~T~~~~pl~~aaa~-a~l~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG  349 (425)
T PRK07495        280 GRA------EIMDAPGPGGLGGTYGGNPLGIAAAH-AVLDVIEEED---LCERANQLGNRLKQRLASLRETVPEIADIRG  349 (425)
T ss_pred             EcH------HHHhccCCCCcCCCCCCCHHHHHHHH-HHHHHHHhch---HHHHHHHHHHHHHHHHHHHHhhCCCeeeeec
Confidence            987      66666554333333444444444444 3566665433   4455555666676666552  2222211  2


Q ss_pred             CCCeeEEEEecCCC---CC---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          393 SDNHLVLVDLRPMG---ID---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       393 t~~~~~~vd~~~~g---~~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      . ..+.++.+....   -+   ...+.+.+.+.|+.+...   |   + ....||+..| ++   ++++|++++.+.+++
T Consensus       350 ~-Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~---g---~-~~~~~r~~Pp-l~---it~~~id~~~~~l~~  417 (425)
T PRK07495        350 P-GFMNAVEFNDADSGLPSAEFANRVRLKALEKGLILLTC---G---V-HGNVIRFLAP-IT---IQDDVFAEALDILEA  417 (425)
T ss_pred             C-ceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeec---C---C-CCCEEEEeCC-Cc---cCHHHHHHHHHHHHH
Confidence            2 345566664321   01   234666677899998431   1   1 1357999644 55   679999999999999


Q ss_pred             HHHH
Q 010008          467 GVEI  470 (520)
Q Consensus       467 ~l~~  470 (520)
                      +++.
T Consensus       418 ~l~~  421 (425)
T PRK07495        418 SILE  421 (425)
T ss_pred             HHHH
Confidence            9864

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=99.35  E-value=2.2e-10  Score=113.08  Aligned_cols=308  Identities=18%  Similarity=0.197  Sum_probs=191.1

Q ss_pred             HHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCC--CCCccccccccccccccccccceEEEEEcccC
Q 010008          146 KRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDL--PHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD  223 (520)
Q Consensus       146 ~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~--~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d  223 (520)
                      +.+++.||.++     .+-.+-|-.|-...+..++++|+.+...-.  ....|+....    ..+...|.  .++.+.++
T Consensus        86 ~avkdifGfq~-----~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr----~h~~~ng~--~~~n~~~~  154 (471)
T COG3033          86 DAVKDIFGFQY-----TIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTR----GHIQINGA--TPRNVYVD  154 (471)
T ss_pred             HHHHHhcCcee-----eeeccCCccHHHHHHHHHhhhccccCCccccccccceecchh----HHHHhcCC--cccccccc
Confidence            45667899875     344566777877778888888777655211  1223332221    12223333  22222222


Q ss_pred             C---------CCCCCCHHHHHHHhhhcCC---cEEEEcCCCCC---C---CCCHHHHHHHHHHhCCEEEEechhhccccc
Q 010008          224 E---------STGLVDYDMLEKTAILFRP---KLIIAGASAYP---R---DFDYPRMRQIADAVGALLMMDMAHISGLVA  285 (520)
Q Consensus       224 ~---------~~~~iD~d~le~~i~~~~p---klIi~~~s~~p---~---~~d~~~i~~ia~~~g~~li~D~Ah~~gli~  285 (520)
                      .         -.|.+|++.|+++|.+..+   -.|++..++|+   .   ..+++++.+||+++++.++.|++..+.-.+
T Consensus       155 ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaY  234 (471)
T COG3033         155 EAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAY  234 (471)
T ss_pred             ccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhh
Confidence            1         1368999999999987543   35555444443   2   457899999999999999999876543221


Q ss_pred             c------cccCCC--------CCcccEEEeccCcccCCCCceEEEeeCCCcchhhHHHhh-----cccCCCCCCCCChHH
Q 010008          286 A------SVVADP--------FKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAI-----NNAVFPGLQGGPHNH  346 (520)
Q Consensus       286 ~------~~~~~p--------~~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i-----~~~~~p~~~g~p~~~  346 (520)
                      .      +.....        +.|||-++.|.-|--..+-||++..+++.  .+++....     -.--||. .|+..--
T Consensus       235 FIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvnmGGfl~~~D~~--~fDvy~~~~~~~V~~eG~~t-YGgl~Gr  311 (471)
T COG3033         235 FIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVNMGGFLCFKDDS--FFDVYEECRTLVVVQEGFPT-YGGLAGR  311 (471)
T ss_pred             hhhhcCcccccccHHHHHHHHHhhhhhheeeccccceeccccEEEecCcc--HHHHHHHHHhheEeeccccc-cCcccch
Confidence            1      111222        23899999999996556788999999851  01122221     1122333 3554555


Q ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCC-------CCCHHH-HHHHHhh
Q 010008          347 TIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM-------GIDGAR-VEKILDM  418 (520)
Q Consensus       347 ~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~-------g~~~~~-~~~~L~~  418 (520)
                      .+.++|+.|.+.....   |.++.++..++|++.|.+.|++++.+ ...|-+++|....       ...++. +.++..+
T Consensus       312 dmealAvGL~e~~~~~---yl~~Rv~Qv~YL~~~l~~~GVpi~~p-aGGHavfvda~~~lphip~eqFpaqala~ely~e  387 (471)
T COG3033         312 DMEALAVGLREGVNFD---YLAHRVAQVQYLADGLEEAGVPIVQP-AGGHAVFVDAGKFLPHIPAEQFPAQALACELYKE  387 (471)
T ss_pred             hHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHhcCCeeEec-CCCceEEeehhhhcCCCChhhCcHHHHHHHHHHH
Confidence            7889999999877644   45666677899999999999998765 2368788875321       122333 4455578


Q ss_pred             cCeEEcC-CC--CCCCC-C----CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHHHHH
Q 010008          419 ASITLNK-NS--VPGDK-S----ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEA  474 (520)
Q Consensus       419 ~gI~v~~-~~--~Pg~~-~----~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~~~~  474 (520)
                      .||.+.- +.  .+-|. .    +....-+|+..|-   +-.+.+.|+.+++.++++.++..++
T Consensus       388 ~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipR---rtYt~~HmD~V~~a~~~l~e~~~~i  448 (471)
T COG3033         388 AGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPR---RTYTQTHMDFVIEAFKALKENAEDI  448 (471)
T ss_pred             hCeeeeeeeceecccCCCccccCCCchheeeEeccc---cccchhHHHHHHHHHHHHHhccccC
Confidence            9997642 21  12222 1    1122469997664   4478999999999999998876444

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.35  E-value=1e-09  Score=117.21  Aligned_cols=323  Identities=14%  Similarity=0.087  Sum_probs=173.0

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh---C
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI---L  180 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al---l  180 (520)
                      .-.|.|.+|+...+.... .  .. +++. ++..   . ...+++.+++.-..+.   .....|||+|+.+++...   .
T Consensus        98 H~~p~v~~Ai~~ql~~l~-~--~~-~~~~-~~~~---~-~lae~L~~~~p~~~~~---v~f~~SGsEAve~AlklAr~~t  165 (459)
T PRK11522         98 HRNPVVVSAVQNQLAKQP-L--HS-QELL-DPLR---A-MLAKTLAALTPGKLKY---SFFCNSGTESVEAALKLAKAYQ  165 (459)
T ss_pred             CCCHHHHHHHHHHHhhCc-c--cc-cccC-CHHH---H-HHHHHHHHhCCCCCCE---EEEeCCchHHHHHHHHHHHHHh
Confidence            347899999988775321 1  11 1221 2211   2 2235666666432221   234579999999887643   2


Q ss_pred             -CCC-CEEEEcCCCCCccccccccccccccccccce-EEEEEcccCCCC---CCCCHHHHHHHhhh-----cCCcEEEEc
Q 010008          181 -KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDEST---GLVDYDMLEKTAIL-----FRPKLIIAG  249 (520)
Q Consensus       181 -~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~-~~~v~~~~d~~~---~~iD~d~le~~i~~-----~~pklIi~~  249 (520)
                       +.| .+|+...-.|.     |....  .+...+.. +..-+.+..+..   ...|.+++++.+..     .+..+||+.
T Consensus       166 ~~~gr~~ii~~~~~yH-----G~t~~--~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvE  238 (459)
T PRK11522        166 SPRGKFTFIATSGAFH-----GKSLG--ALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILE  238 (459)
T ss_pred             ccCCCcEEEEecCCCC-----CCcHH--HhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEEEEe
Confidence             123 35777665443     32110  11122210 000000111110   12377888887753     133456665


Q ss_pred             C--CCCCCCCC----HHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEeccCcccCCC--CceEEEee
Q 010008          250 A--SAYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRGP--RGGMIFFK  318 (520)
Q Consensus       250 ~--s~~p~~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S~hK~l~Gp--rgG~I~~~  318 (520)
                      .  ++.+...+    +++++++|+++|+++|+|++|. |+--.|.. . .-+. ..|++++  .|.|.|.  ..|.++++
T Consensus       239 pv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~t-G~GRtG~~~a~e~~gv~PDivt~--gK~lggG~~Pigav~~~  315 (459)
T PRK11522        239 PIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQT-GMGRTGKMFACEHENVQPDILCL--AKALGGGVMPIGATIAT  315 (459)
T ss_pred             cccCCCCCccCCHHHHHHHHHHHHHcCCEEEecccee-cCCccchhhhhhccCCCCCEEEe--chhhhCCCccceeEEEc
Confidence            2  22222344    8999999999999999999984 54212210 0 0011 3688855  5999652  34555555


Q ss_pred             CCCcchhhHHHhhccc--CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCE-EecC--
Q 010008          319 KDPVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYK-LVSG--  391 (520)
Q Consensus       319 ~~~~~~~~l~~~i~~~--~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~-v~~~--  391 (520)
                      +      ++.+.+...  .+..+.+++.....+++ ++|+.+.+++   ..+++.++.++|.+.|++.  .+. ++..  
T Consensus       316 ~------~i~~~~~~~~~~~~~T~~gnp~~~Aaal-a~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~i~~Vr  385 (459)
T PRK11522        316 E------EVFSVLFDNPFLHTTTFGGNPLACAAAL-ATINVLLEQN---LPAQAEQKGDYLLDGFRQLAREYPDLVQEAR  385 (459)
T ss_pred             H------HHHHHhccCCcccCCCCCCCHHHHHHHH-HHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHhCCCceeeEE
Confidence            5      455544221  22233444343333343 3677765543   4567777788888888763  233 2221  


Q ss_pred             CCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          392 GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       392 gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      | ...+.-+.+.... ....+.+.|.+.||.+... .      .....+|+..+..    ++++|++++.+.+.+++...
T Consensus       386 G-~Gl~~giel~~~~-~~~~i~~~l~~~Gvl~~~~-~------~~~~~lr~~Ppl~----~t~~~id~~l~~l~~~l~~~  452 (459)
T PRK11522        386 G-KGMLMAIEFVDNE-IGYNFASEMFRQRVLVAGT-L------NNAKTIRIEPPLT----LTIEQCEQVLKAARKALAAM  452 (459)
T ss_pred             e-ceeEEEEEecCch-HHHHHHHHHHHCCeEEEec-C------CCCCEEEEECCcc----CCHHHHHHHHHHHHHHHHHH
Confidence            2 1234445554321 2355777788899998532 1      1246799976533    56999999999999998754

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.33  E-value=1.9e-09  Score=114.36  Aligned_cols=320  Identities=17%  Similarity=0.139  Sum_probs=169.9

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh---C
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI---L  180 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al---l  180 (520)
                      .-.|.|.+|+...+.+..   +.. +|+. ++..   . ...+++++++.-..+   .....+|||+||.+++...   .
T Consensus        91 h~hp~v~~Av~~ql~~l~---~~~-~~~~-~~~~---~-~lAe~L~~~~p~~~~---~v~f~~SGsEA~e~AlklAr~~t  158 (442)
T TIGR03372        91 HRNPNVIAAVENQLAKQP---LHS-QELL-DPLR---A-LLAKTLAALTPGKLK---YSFFCNSGTESVEAALKLAKAYQ  158 (442)
T ss_pred             CCCHHHHHHHHHHHHhCC---Ccc-cccC-CHHH---H-HHHHHHHHhCCCCcC---EEEEeCCchHHHHHHHHHHHHHH
Confidence            457899999888775432   111 2221 2211   2 233567777643322   1244689999999887632   2


Q ss_pred             C-CC-CEEEEcCCCCCccccccccccccccccccce-EEEEEcccCCCC---CCCCHHHHHHHhhh-----cCCcEEEEc
Q 010008          181 K-PH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDEST---GLVDYDMLEKTAIL-----FRPKLIIAG  249 (520)
Q Consensus       181 ~-pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~-~~~v~~~~d~~~---~~iD~d~le~~i~~-----~~pklIi~~  249 (520)
                      . .| .+|+...-.|.|.- .+      .+..++.. +.....++.+.-   -..|.+.+++.+..     .+..+||+.
T Consensus       159 ~~~gr~~ii~~~~~yHG~t-~~------~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vAavIvE  231 (442)
T TIGR03372       159 SPRGKFTFIAASGAFHGKS-LG------ALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILE  231 (442)
T ss_pred             hhcCCcEEEEECCCccCCC-HH------HhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            1 23 57887776543321 01      11111110 000000111000   02366777766642     234566665


Q ss_pred             C--CCCCCCCC----HHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEeccCcccCCC--CceEEEee
Q 010008          250 A--SAYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRGP--RGGMIFFK  318 (520)
Q Consensus       250 ~--s~~p~~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S~hK~l~Gp--rgG~I~~~  318 (520)
                      .  +..+...+    +++++++|+++|+++|+|++|. |+--.|.. . .-+. ..|+++  +.|.|.|.  ..|.++++
T Consensus       232 pv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~t-G~GRtG~~~a~e~~gv~PDivt--~gK~lg~G~~Pigavv~~  308 (442)
T TIGR03372       232 PIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQT-GMGRTGKMFACEHEGVQPDILC--LAKALGGGVMPIGATIAT  308 (442)
T ss_pred             CccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeeccc-CCCccccchhhhhcCCCCCeee--ehhhhcCCcccceEEEec
Confidence            2  22222444    8999999999999999999983 43212211 0 0011 368887  45999642  45666677


Q ss_pred             CCCcchhhHHHhhccc--CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCE-Eec--C
Q 010008          319 KDPVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYK-LVS--G  391 (520)
Q Consensus       319 ~~~~~~~~l~~~i~~~--~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~-v~~--~  391 (520)
                      +      ++.+.+...  .+..+.++......+++ ++|+.+.+++   ..+++.+..++|.+.|++.  .++ .+.  .
T Consensus       309 ~------~i~~~~~~~~~~~~~T~~gnp~~~Aaa~-a~L~~i~~~~---l~~~~~~~G~~l~~~L~~l~~~~~~~i~~vR  378 (442)
T TIGR03372       309 E------AVFSVLFDNPFLHTTTFGGNPLACAAAL-ATINELLEKN---LPAQAAIKGDFLLDGFQQLAAEYPDLIIEAR  378 (442)
T ss_pred             H------HHHHhhhccCccccCCCCCCHHHHHHHH-HHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHhCCCceEEEe
Confidence            6      565555221  22233444333333333 3577665433   3455555666777777652  122 111  1


Q ss_pred             CCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          392 GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       392 gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      | ...++-+.+... .....+.+.|.+.||.+... .|      .+..+||..| ++   ++++|++++.+++++++
T Consensus       379 G-~Gl~~giel~~~-~~~~~i~~~l~~~Gvl~~~~-~~------~~~~lr~~Pp-l~---~t~~~id~~~~~l~~~~  442 (442)
T TIGR03372       379 G-KGLLMAIEFRDN-EIGYAFAKELFQQNILVAGT-LN------NAKSIRIEPP-LT---ITIEQCALVIKAAKDAL  442 (442)
T ss_pred             c-ceEEEEEEeCCh-HHHHHHHHHHHHCCcEEeec-CC------CCCEEEEECC-cc---cCHHHHHHHHHHHHHhC
Confidence            2 233444555322 12355777788899998532 11      1357999755 33   67999999999998753

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.32  E-value=6.4e-09  Score=110.75  Aligned_cols=330  Identities=15%  Similarity=0.050  Sum_probs=174.6

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh--CC
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK  181 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al--l~  181 (520)
                      .-.|.|.+|+...+.+...   ....++ .++.  .+|  ..+++.+++....+.   ....+|||+|+.+++...  ..
T Consensus        57 h~~p~v~~Ai~~ql~~~~~---~~~~~~-~~~~--~~~--la~~L~~~~p~~~~~---v~f~~sGsEAve~AlklAr~~t  125 (443)
T PRK08360         57 HNNPRVVKAIKEQTDKLIH---YTPIYG-FPVE--PLL--LAEKLIEIAPGDNPK---VSFGLSGSDANDGAIKFARAYT  125 (443)
T ss_pred             CCCHHHHHHHHHHHHhccC---cccccc-CcHH--HHH--HHHHHHHhCCCCCCE---EEEcCCHHHHHHHHHHHHHHhc
Confidence            4578888888887764311   111111 1221  122  235677776543222   244689999999887643  22


Q ss_pred             CCCEEEEcCCCCCcc-ccccccccccccc--ccc--ceEEEEEcccCCC-CCC--------CCHHHHHHHhhh----cCC
Q 010008          182 PHDRIMGLDLPHGGH-LSHGFMTPKRRVS--GTS--IYFESMPYRLDES-TGL--------VDYDMLEKTAIL----FRP  243 (520)
Q Consensus       182 pGD~Vl~~~~~~~gh-ls~g~~~~~~~v~--~~g--~~~~~v~~~~d~~-~~~--------iD~d~le~~i~~----~~p  243 (520)
                      ...+|+...-.|.|. ......+......  ..+  ..+..++++-... .+.        -+.+.+++++..    .++
T Consensus       126 gr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i  205 (443)
T PRK08360        126 KRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGV  205 (443)
T ss_pred             CCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCe
Confidence            235677665443222 1000000000000  000  0012223321000 000        123455666642    357


Q ss_pred             cEEEEcCCCCCC--CC----CHHHHHHHHHHhCCEEEEechhhcccccccccCC--CCC-cccEEEeccCccc-CCCCce
Q 010008          244 KLIIAGASAYPR--DF----DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK-YCDVVTTTTHKSL-RGPRGG  313 (520)
Q Consensus       244 klIi~~~s~~p~--~~----d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~--p~~-~aDiv~~S~hK~l-~GprgG  313 (520)
                      ++|++....+++  ..    -+++++++|+++|+++|+|++|. |+...+....  .+. ..|++++  +|.+ .|++.|
T Consensus       206 AAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~gr~G~~~a~~~~~~~pDiitl--sK~l~~G~pig  282 (443)
T PRK08360        206 AALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQS-GLGRTGKWFAIEHFGVEPDIITL--GKPLGGGLPIS  282 (443)
T ss_pred             EEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCccchhhhhcCCCCCEEEe--cccccCCceeE
Confidence            888887433332  22    28899999999999999999965 5433332110  111 3577754  7998 567889


Q ss_pred             EEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCEEecC
Q 010008          314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVSG  391 (520)
Q Consensus       314 ~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~v~~~  391 (520)
                      ++++++      ++.+.+.........+++.....+++ .+++.+.+++   ..+++.++.++|.+.|++.  .+.++..
T Consensus       283 av~~~~------~i~~~~~~~~~~~T~~~~p~~~aaa~-a~l~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~v~~  352 (443)
T PRK08360        283 ATIGRA------EIMDSLPPLAHAFTLSGNPVASAAAL-AVIEEIEEKN---LLKRAEKLGNYTKKRLEEMKKKHELIGD  352 (443)
T ss_pred             EEEEcH------HHHhhhcCCCCCCCCCcCHHHHHHHH-HHHHHHHHcC---HHHHHHHHHHHHHHHHHHHHHhCCCeee
Confidence            999987      67666654323333444444444333 3576665433   3556666667777776552  2333221


Q ss_pred             --CCCCeeEEEEecCCC----CC---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHH
Q 010008          392 --GSDNHLVLVDLRPMG----ID---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIAD  462 (520)
Q Consensus       392 --gt~~~~~~vd~~~~g----~~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~  462 (520)
                        | ..-++-+++....    .+   ...+...|.+.||.+...         ....+|+..+..    ++++|++++.+
T Consensus       353 vrg-~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------~~~~lr~~P~l~----~t~~~id~~~~  418 (443)
T PRK08360        353 VRG-IGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFF---------SGNVLRIQPPLT----IEKEVLDEGLD  418 (443)
T ss_pred             eec-cceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeec---------CCCEEEEeCCCC----CCHHHHHHHHH
Confidence              2 1223333442110    01   234667788899998421         135799975533    56999999999


Q ss_pred             HHHHHHHHH
Q 010008          463 FIHEGVEIT  471 (520)
Q Consensus       463 ~i~~~l~~~  471 (520)
                      .+.+++...
T Consensus       419 ~l~~~l~~~  427 (443)
T PRK08360        419 ILEEAIEDV  427 (443)
T ss_pred             HHHHHHHHH
Confidence            999998753

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.31  E-value=4.5e-09  Score=109.81  Aligned_cols=328  Identities=18%  Similarity=0.111  Sum_probs=176.0

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC-CCCCceeeecCChHHHHHHHHHhh-C-C
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAI-L-K  181 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~-~~~~~~~V~~~sGs~A~~~~l~al-l-~  181 (520)
                      -+|.|.+|+...+..-. +  ...+|......++.     .+++.+++-.+ .+   .....+||++||.+++... . .
T Consensus        73 ~hP~Vv~Av~~q~~~~~-h--~~~~~~~~e~~v~~-----ae~L~~~~p~~~~~---~~~f~~sGaeA~E~AiKiAr~~T  141 (447)
T COG0160          73 NHPRVVEAVKRQLAKLN-H--THTRDLYYEPYVEL-----AEKLTALAPGSGLK---KVFFGNSGAEAVEAAIKIARAYT  141 (447)
T ss_pred             CCHHHHHHHHHHHHHhh-c--ccCCcccchhHHHH-----HHHHHHhCCcccCC---eEEecCCcHHHHHHHHHHHHHHh
Confidence            57999999887665321 1  11122221222222     24566666543 22   2455789999999888643 2 2


Q ss_pred             CCCEEEEcCCCCCcccccccc--ccccccc---c--ccceEEEEEcccCCCC-CCC--------CHHHHHHHhhh-----
Q 010008          182 PHDRIMGLDLPHGGHLSHGFM--TPKRRVS---G--TSIYFESMPYRLDEST-GLV--------DYDMLEKTAIL-----  240 (520)
Q Consensus       182 pGD~Vl~~~~~~~ghls~g~~--~~~~~v~---~--~g~~~~~v~~~~d~~~-~~i--------D~d~le~~i~~-----  240 (520)
                      -...|+...-.|.|. |++..  +..+...   +  ....+..++||..... +..        ..+.++..+..     
T Consensus       142 gr~~viaf~~afHG~-T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~  220 (447)
T COG0160         142 GRPGVIAFDGAFHGR-TLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGP  220 (447)
T ss_pred             CCCcEEEECCccccc-chhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCC
Confidence            245677776654332 11111  0000000   0  0011233444421110 111        22334443322     


Q ss_pred             cCCcEEEEcCC-CCCC-----CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC----cccEEEeccCcccCC-
Q 010008          241 FRPKLIIAGAS-AYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSLRG-  309 (520)
Q Consensus       241 ~~pklIi~~~s-~~p~-----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~----~aDiv~~S~hK~l~G-  309 (520)
                      .++-++|+..- ..++     .--+++++++|++||+++|+|+.|. |+--.|. -..++    ..||+|++  |.+.| 
T Consensus       221 ~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQt-G~GRTG~-~fa~E~~gv~PDivt~a--K~ig~G  296 (447)
T COG0160         221 EEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQT-GFGRTGK-MFAFEHFGVEPDIVTLA--KSLGGG  296 (447)
T ss_pred             CceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcccc-chhhhhcCCCCCEEEec--ccccCC
Confidence            24567777522 1222     1237899999999999999999974 4332231 11122    36899887  99854 


Q ss_pred             CCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH--CCCE
Q 010008          310 PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE--LGYK  387 (520)
Q Consensus       310 prgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~--~G~~  387 (520)
                      ...|.+++++      ++.+ .......++.+|......+|++ .|+.+.++   ...++..+.-++|.+.|.+  ..++
T Consensus       297 ~Pl~avv~r~------ei~~-~~~g~~~~Tf~GNpva~Aaa~A-vL~vie~e---~L~~~a~~~G~~l~~~L~~l~~~~~  365 (447)
T COG0160         297 LPLSAVVGRA------EIMD-WPPGGHGGTFGGNPVACAAALA-VLDVIEEE---NLLERAAELGEYLRDRLEELQEKHP  365 (447)
T ss_pred             CceeEEeccH------Hhcc-cCCcccCCCCCcCHHHHHHHHH-HHHHHHHc---cHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            4458888887      4544 3333344445665555555554 46655443   4456666667777777765  2455


Q ss_pred             EecCCCC-CeeEEEEecCC----CCCH---HHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHH
Q 010008          388 LVSGGSD-NHLVLVDLRPM----GIDG---ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVA  459 (520)
Q Consensus       388 v~~~gt~-~~~~~vd~~~~----g~~~---~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~  459 (520)
                      ++.+-.. ..+.-+++...    .-+.   ..+.+.+.+.|+.+...   |    ...+.|||-.| +|   ++++++++
T Consensus       366 ~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~---G----~~~nviRi~PP-L~---is~e~~d~  434 (447)
T COG0160         366 LIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTC---G----PHGNVLRILPP-LT---ISDEELDE  434 (447)
T ss_pred             ceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEecc---C----CCCcEEEEeCC-cc---cCHHHHHH
Confidence            5543111 22333444311    1222   44667778899877432   1    12467999655 55   67999999


Q ss_pred             HHHHHHHHHHH
Q 010008          460 IADFIHEGVEI  470 (520)
Q Consensus       460 la~~i~~~l~~  470 (520)
                      ..++|.++++.
T Consensus       435 ~l~il~~al~~  445 (447)
T COG0160         435 GLDILEEALKE  445 (447)
T ss_pred             HHHHHHHHHHh
Confidence            99999998864

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.31  E-value=4.8e-09  Score=111.11  Aligned_cols=321  Identities=14%  Similarity=0.079  Sum_probs=173.0

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC-CCCCceeeecCChHHHHHHHHHhh-C-
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAI-L-  180 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~-~~~~~~~V~~~sGs~A~~~~l~al-l-  180 (520)
                      .-.|.|.+|+...+.+. ..  ....++. ++  ..++ ++ +++.+++... .+.   .+..+|||+|+.+++... . 
T Consensus        56 h~~p~v~~ai~~ql~~~-~~--~~~~~~~-~~--~~~~-la-~~l~~~~p~~~~~~---~~f~~sGseA~e~AlklAr~~  124 (421)
T PRK06777         56 HRHPKVVAAVRQQLDQF-TH--TAYQIVP-YA--SYVT-LA-ERINALAPIDGPAK---TAFFTTGAEAVENAVKIARAY  124 (421)
T ss_pred             CCCHHHHHHHHHHHhhc-cc--ccccccC-Ch--HHHH-HH-HHHHHhCCCCCCce---EEEeCCcHHHHHHHHHHHHHh
Confidence            34678888888777542 11  1100011 11  1222 33 5666766431 221   244579999999887633 2 


Q ss_pred             CCCCEEEEcCCCCCccccccccccccccccccc-------------eEEEEEcccCCC--CCCCCHHHHHHHhhh----c
Q 010008          181 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-------------YFESMPYRLDES--TGLVDYDMLEKTAIL----F  241 (520)
Q Consensus       181 ~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~-------------~~~~v~~~~d~~--~~~iD~d~le~~i~~----~  241 (520)
                      ....+|+...-.|.|.- .+.      +++.+.             .+..++++-...  ....|++.+++.+..    .
T Consensus       125 tgr~~ii~~~~~yHG~t-~~~------~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~  197 (421)
T PRK06777        125 TGRPGVIAFGGAFHGRT-LLT------MALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPD  197 (421)
T ss_pred             hCCCeEEEEcCCcCCcc-HHH------HhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCC
Confidence            22356887775543331 111      111110             001112221000  011246667777752    2


Q ss_pred             CCcEEEEcCC-CCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCC---C-cccEEEeccCccc-CCC
Q 010008          242 RPKLIIAGAS-AYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YCDVVTTTTHKSL-RGP  310 (520)
Q Consensus       242 ~pklIi~~~s-~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~---~-~aDiv~~S~hK~l-~Gp  310 (520)
                      +..+||+... +..+  ..+   +++|+++|+++|+++|+|++|. |+...+.. ..+   . ..|+++  ++|.+ +|+
T Consensus       198 ~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-g~gr~g~~-~~~~~~~~~pDiv~--~sK~l~~G~  273 (421)
T PRK06777        198 QVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQT-GFARTGKL-FAMEYYDVKPDLIT--MAKSLGGGM  273 (421)
T ss_pred             ceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCccCCch-hhhhhcCCCCCEEe--eehhhcCCC
Confidence            3556776532 1122  333   8999999999999999999965 65433321 111   1 367764  67988 567


Q ss_pred             CceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC----CC
Q 010008          311 RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL----GY  386 (520)
Q Consensus       311 rgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~----G~  386 (520)
                      +.|++++++      ++.+.+.......+.+++.....+++ .+|+.+.+   ++..+++.++.++|.+.|++.    ++
T Consensus       274 pigav~~~~------~i~~~~~~~~~~~T~~~~p~~~aaa~-a~L~~~~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~  343 (421)
T PRK06777        274 PISAVVGRA------EVMDAPAPGGLGGTYAGNPLAVAAAL-AVLDVIAE---EKLCQRALILGAHLVEVLEKAKASCPA  343 (421)
T ss_pred             ceEEEEEcH------HHHhccCCCCCCCCCCcCHHHHHHHH-HHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            889999987      67666654333334455444444443 46765543   345667777788888887662    21


Q ss_pred             -EEecCCCCCeeEEEEecC--CCCCH----HHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHH
Q 010008          387 -KLVSGGSDNHLVLVDLRP--MGIDG----ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVA  459 (520)
Q Consensus       387 -~v~~~gt~~~~~~vd~~~--~g~~~----~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~  459 (520)
                       ..+. +. .-++.+.+..  .+.+.    ..+.+.|.+.||.+.    |+..  + .+.+||..| ++   .+++++++
T Consensus       344 i~~vr-g~-G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~----~~~~--~-g~~lr~~pp-l~---i~~~~i~~  410 (421)
T PRK06777        344 IVDIR-AR-GSMVAVEFNDPQTGKPSPEFTRQYQRQALEEGLLLL----SCGV--H-GNVIRFLYP-LT---IPDAQFSK  410 (421)
T ss_pred             eEEec-Cc-eEEEEEEEecCccCCccHHHHHHHHHHHHhCCeEEe----ecCC--C-CCEEEEeCC-CC---CCHHHHHH
Confidence             1122 22 2233333321  11111    234444677999983    4321  1 258999855 43   56899999


Q ss_pred             HHHHHHHHHH
Q 010008          460 IADFIHEGVE  469 (520)
Q Consensus       460 la~~i~~~l~  469 (520)
                      +.+.|.+++.
T Consensus       411 ~~~~l~~~l~  420 (421)
T PRK06777        411 ALNILTRLLA  420 (421)
T ss_pred             HHHHHHHHHh
Confidence            9999988763

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.31  E-value=1e-09  Score=123.71  Aligned_cols=274  Identities=13%  Similarity=0.069  Sum_probs=170.2

Q ss_pred             HHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhh-C--CCCCEEEEcCCCCCccccccccccccccccccceEEEEE
Q 010008          144 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAI-L--KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMP  219 (520)
Q Consensus       144 a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~al-l--~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~  219 (520)
                      .+..++++.|.+..    |.....++ .+-.+++++. .  +++++|++++..|+......   .   -...+.+++++.
T Consensus       114 ~Qt~i~eLtGm~~a----NaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~---~---t~a~~~g~~v~~  183 (939)
T TIGR00461       114 FQTVVSDLTGLPVA----NASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVL---H---TRAKPFGIEVIV  183 (939)
T ss_pred             HHHHHHHHHCCChh----hhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHH---H---HHHHhcCcEEEE
Confidence            45788999999863    33334443 3333455553 2  34589999887764332100   0   011222335544


Q ss_pred             cccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC-CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-ccc
Q 010008          220 YRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCD  297 (520)
Q Consensus       220 ~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~-~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aD  297 (520)
                      +         |++++++.+   ++..+++.+|++-+ ..|+++|.+++|++|++++++.-..+    ......|-+ |+|
T Consensus       184 ~---------~~~~l~~~~---~~~~v~~q~Pn~~G~ied~~~i~~~~h~~gal~~~~ad~~a----l~ll~~Pge~GaD  247 (939)
T TIGR00461       184 V---------DCSDIKKAV---DVFGCLLQYPATDGSILDYKQLIDALHSHKSLVSVAADLMA----LTLLTPPGHYGAD  247 (939)
T ss_pred             E---------cHHHHhhcC---CEEEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechHH----hCCcCCHHHcCCc
Confidence            2         445565554   35677777887665 66999999999999999999753332    223334444 799


Q ss_pred             EEEeccCccc-----CCCCceEEEeeCCCcchhhHHHhhccc------------CCCC-C----------CCCCh---HH
Q 010008          298 VVTTTTHKSL-----RGPRGGMIFFKKDPVLGVELESAINNA------------VFPG-L----------QGGPH---NH  346 (520)
Q Consensus       298 iv~~S~hK~l-----~GprgG~I~~~~~~~~~~~l~~~i~~~------------~~p~-~----------~g~p~---~~  346 (520)
                      |++++.+++.     +||..|++.+++.      +.+++.-.            .|.. +          -++.+   ..
T Consensus       248 i~vg~~q~fg~p~g~GGP~aG~~a~~~~------l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~q  321 (939)
T TIGR00461       248 IVLGSSQRFGVPMGYGGPHAAFFAVKDE------YNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQ  321 (939)
T ss_pred             EEeeCCCccCCCCCCCCCceeeeeecHh------hHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHH
Confidence            9988777753     5888899999874      32221100            0000 0          11211   22


Q ss_pred             HHHHHHHH--HHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEc
Q 010008          347 TIGGLAVC--LKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN  424 (520)
Q Consensus       347 ~iaala~a--l~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~  424 (520)
                      .+.|+.++  +..+...++++..+++..++.+|++.|.+.|++++.+. --.-+.+++.  +.+.+++.+.|.+.||.++
T Consensus       322 aL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~G~~~~~~~-fF~~~~v~~~--~~~~~~i~~~~~~~gi~l~  398 (939)
T TIGR00461       322 VLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLENDPHELINKT-WFDTLTVKVG--NGISSELLKAAEEFNINLR  398 (939)
T ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-ccceEEEEeC--CCCHHHHHHHHHHCCCeee
Confidence            23333333  34444456788899999999999999999999987641 1112334442  1356788889999999986


Q ss_pred             CCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHH
Q 010008          425 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  465 (520)
Q Consensus       425 ~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~  465 (520)
                      ..         ..+.+++++...+|    ++|++.+++.+.
T Consensus       399 ~~---------~~~~i~~s~~E~~t----~~di~~l~~~~~  426 (939)
T TIGR00461       399 AV---------DTTTVGIALDETTT----KADVENLLKVFD  426 (939)
T ss_pred             ec---------CCCEEEEEeecCCC----HHHHHHHHHHhc
Confidence            41         23579999887776    799999999995

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.31  E-value=2.7e-09  Score=113.74  Aligned_cols=327  Identities=14%  Similarity=0.105  Sum_probs=170.2

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHH---hhC
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT---AIL  180 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~---all  180 (520)
                      .-.|.|.+|+...+.+ +.. +..  ....++   ...+ ..+++.+++......  -.+..+||++|+.+++.   ...
T Consensus        72 h~~p~v~~ai~~q~~~-~~~-~~~--~~~~~~---~~~~-la~~l~~~~p~~~~~--~v~f~~sGseA~e~AlklAr~~t  141 (443)
T PRK06058         72 NSAPRVVEAVREQVAR-FTH-TCF--MVTPYE---GYVA-VAEQLNRLTPGDHEK--RSALFNSGAEAVENAVKIARSYT  141 (443)
T ss_pred             CCCHHHHHHHHHHHHh-ccC-ccc--cccCCH---HHHH-HHHHHHHhCCCCCCC--EEEEeCCcHHHHHHHHHHHHHhh
Confidence            4578899888887754 211 000  001111   2222 335677776432111  12456899999998887   333


Q ss_pred             CCCCEEEEcCCCCCccccccccc-------ccccc--ccccceEEEEEc--ccCC-CCCCCC--------HHHHHHHhhh
Q 010008          181 KPHDRIMGLDLPHGGHLSHGFMT-------PKRRV--SGTSIYFESMPY--RLDE-STGLVD--------YDMLEKTAIL  240 (520)
Q Consensus       181 ~pGD~Vl~~~~~~~ghls~g~~~-------~~~~v--~~~g~~~~~v~~--~~d~-~~~~iD--------~d~le~~i~~  240 (520)
                       ..++|+..+..|.|.- .+...       .....  ...+  ...+++  +.+. .....+        .+.+++.+..
T Consensus       142 -gr~~ii~~~~~yHG~t-~~al~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  217 (443)
T PRK06058        142 -GRQAVVVFDHAYHGRT-NLTMALTAKSMPYKSGFGPFAPE--VYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGA  217 (443)
T ss_pred             -CCCeEEEECCCcCcCh-HHHHhhcCCCcccccccCCCCCC--ceEcCCCcccccccccccchHHHHHHHHHHHHHhhCC
Confidence             3478988877653331 01000       00000  0001  011111  1110 000111        2233343332


Q ss_pred             cCCcEEEEcCC-CCCC-CC----CHHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEeccCccc-CCC
Q 010008          241 FRPKLIIAGAS-AYPR-DF----DYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSL-RGP  310 (520)
Q Consensus       241 ~~pklIi~~~s-~~p~-~~----d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S~hK~l-~Gp  310 (520)
                      .+..+||+... ..++ ..    -+++|+++|+++|+++|+|+.+. |+...|.. . .-+. ..|+++++  |.+ .|.
T Consensus       218 ~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~t-GfgRtG~~fa~~~~gv~PDiv~~g--K~l~~G~  294 (443)
T PRK06058        218 DNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQT-GFARTGAWFACEHEGIVPDLITTA--KGIAGGL  294 (443)
T ss_pred             CceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcChhhhHHHhcCCCCCEEEEc--ccccCCC
Confidence            35677777532 1222 22    28999999999999999999864 54322211 0 0011 35888875  998 456


Q ss_pred             CceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCEE
Q 010008          311 RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKL  388 (520)
Q Consensus       311 rgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~v  388 (520)
                      +.|++++++      ++.+.+......++.++......+|+ ++|+.+.+++   ..+++.+..++|.+.|++.  .+.+
T Consensus       295 Pi~av~~~~------~i~~~~~~~~~~~T~~gnpl~~aaa~-a~L~~~~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~  364 (443)
T PRK06058        295 PLSAVTGRA------EIMDAPHPGGLGGTYGGNPVACAAAL-AAIETIEEDD---LVARARQIEALMTDRLRALAAEDDR  364 (443)
T ss_pred             ccEEEEEcH------HHHhhccCCCCCCCCCCCHHHHHHHH-HHHHHHHHcC---HHHHHHHHHHHHHHHHHHHHhhCCc
Confidence            678888887      66666654333333444444434443 3566654433   3455666677777777652  1233


Q ss_pred             ec--CCCCCeeEEEEecCC--CC-C---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHH
Q 010008          389 VS--GGSDNHLVLVDLRPM--GI-D---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAI  460 (520)
Q Consensus       389 ~~--~gt~~~~~~vd~~~~--g~-~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~l  460 (520)
                      +.  .|. ..++.+.+...  .. +   ...+.+.|.+.||.+..    +.  ++ ...||+..| ++   ++++|++++
T Consensus       365 i~~vrg~-G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~~~~----~~--~~-~~~lr~~Pp-l~---~t~~~i~~~  432 (443)
T PRK06058        365 IGDVRGR-GAMIAIELVKPGTTEPDAELTKALAAAAHAAGVIVLT----CG--TY-GNVIRLLPP-LV---IGDELLREG  432 (443)
T ss_pred             EEeeecc-ceEEEEEEecCCCCCCcHHHHHHHHHHHHHCCeEEec----cC--CC-CCEEEEECC-Cc---cCHHHHHHH
Confidence            21  122 23333444221  11 1   23355566789999843    21  11 257999655 33   579999999


Q ss_pred             HHHHHHHHH
Q 010008          461 ADFIHEGVE  469 (520)
Q Consensus       461 a~~i~~~l~  469 (520)
                      ++.++++++
T Consensus       433 ~~~l~~~l~  441 (443)
T PRK06058        433 LDVLEAALA  441 (443)
T ss_pred             HHHHHHHHH
Confidence            999998875

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=99.30  E-value=2.5e-10  Score=116.44  Aligned_cols=269  Identities=15%  Similarity=0.236  Sum_probs=177.0

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh---CCC--C---CEEEEcCCCCCcccccccccccccc
Q 010008          137 IDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI---LKP--H---DRIMGLDLPHGGHLSHGFMTPKRRV  208 (520)
Q Consensus       137 ~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al---l~p--G---D~Vl~~~~~~~ghls~g~~~~~~~v  208 (520)
                      ..++|..|...++.+|+.+.+..+.  .++.||++..++....   .+.  |   -.++++...|.+     +   .+..
T Consensus       118 ~~~~e~~~Vnm~~~L~~~~~~~~g~--~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a-----~---eK~a  187 (491)
T KOG1383|consen  118 VRKLEAECVNMIANLFNAPSDSCGC--GTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAA-----F---EKAA  187 (491)
T ss_pred             hHHHHHHHHHHHHHHhcCCccccCc--cccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHH-----H---HHHH
Confidence            4588999999999999999765432  2234457755444332   111  1   122322221111     1   1111


Q ss_pred             ccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHH-hCCEEEEechhhccccc
Q 010008          209 SGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADA-VGALLMMDMAHISGLVA  285 (520)
Q Consensus       209 ~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~-~g~~li~D~Ah~~gli~  285 (520)
                      ...+.  +...+++++.++.+|+.++.+.+.+ ++.+++...++.|.  ..|+++|.+++-+ .++.+++|++ .-|++.
T Consensus       188 ~yf~v--~l~~V~~~~~~~~~D~~k~~~~i~e-Nti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~-~GgFi~  263 (491)
T KOG1383|consen  188 RYFEV--ELREVPLDEGDYRVDPGKVVRMIDE-NTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDAC-LGGFIN  263 (491)
T ss_pred             hhEEE--EEEeeeccccceEecHHHHHHHhcc-ceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeeccc-Cccccc
Confidence            22233  4455667777899999999999998 89999988888776  6789999999998 9999999987 445554


Q ss_pred             c-cccC-CCCC----cccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhh--cccCCCC------CCCCChHHHHHH
Q 010008          286 A-SVVA-DPFK----YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI--NNAVFPG------LQGGPHNHTIGG  350 (520)
Q Consensus       286 ~-~~~~-~p~~----~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i--~~~~~p~------~~g~p~~~~iaa  350 (520)
                      . +... .+++    +.--++.++||.-..|.| |+++++...    .+...+  ......|      +.|+-..+++++
T Consensus       264 p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~----~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~  339 (491)
T KOG1383|consen  264 PAGYLNEEEFDFRVPGVTSISADGHKYGLAPAGSSWVLYRNKE----LLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAA  339 (491)
T ss_pred             cccccCccccccCCCCceeEeeccceeeeeecCcEEEEEcccc----cccceEEEeccccCccccCcccccCCcccHHHH
Confidence            2 3222 2332    556788899998656777 888887742    111111  1111222      233334456777


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCC
Q 010008          351 LAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKN  426 (520)
Q Consensus       351 la~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~  426 (520)
                      ..++|-.+..++|.+..+++.++++.|.+.+++ .++.++...   -..++-+.....+-.++...|.+.|..+|.-
T Consensus       340 ~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp---~vs~~~~~s~~~~i~elsd~l~~~GW~lnal  413 (491)
T KOG1383|consen  340 QWAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKIVGKP---LVSFILFGSNDVNIFELSDLLRKKGWILNAL  413 (491)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceecCCC---cEEEEEccCCccchhhhhHHHHhcCcCcccc
Confidence            777777676788999999999999999999988 688887652   2223333444566678999999999988653

>PRK12403 putative aminotransferase; Provisional

Probab=99.30  E-value=3.5e-09  Score=113.26  Aligned_cols=323  Identities=16%  Similarity=0.113  Sum_probs=162.8

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCC-cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC--
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYG-GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--  180 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~-g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all--  180 (520)
                      .-.|.|.+|+...+.. +..+.   .++. .++...++    .++++++++-..+.   .+..+||++||.+++....  
T Consensus        70 h~hp~v~~A~~~q~~~-~~~~~---~~~~~~~~~~~~l----ae~L~~~~p~~~~~---v~f~~SGseA~e~AiklAr~~  138 (460)
T PRK12403         70 YGRKDLAAAAARQMEQ-LPYYN---MFFHTTHPAVIEL----SELLFSLLPGHYSH---AIYTNSGSEANEVLIRTVRRY  138 (460)
T ss_pred             CCCHHHHHHHHHHHHh-CCCee---cccccCCHHHHHH----HHHHHHhCCCCcCE---EEEeCCcHHHHHHHHHHHHHH
Confidence            3468888888877753 32221   1222 22322233    36777787633221   3456899999998887652  


Q ss_pred             -----CCCCEEE-EcCCCCCccccccccccccccccccce-----------EEEEEcccC-CCCCC--------CCHHHH
Q 010008          181 -----KPHDRIM-GLDLPHGGHLSHGFMTPKRRVSGTSIY-----------FESMPYRLD-ESTGL--------VDYDML  234 (520)
Q Consensus       181 -----~pGD~Vl-~~~~~~~ghls~g~~~~~~~v~~~g~~-----------~~~v~~~~d-~~~~~--------iD~d~l  234 (520)
                           ++++.++ ...-.|     ||....  .++.++..           +..++++.- .....        .+.+++
T Consensus       139 ~~~~g~~~r~~ii~~~~~y-----HG~t~~--~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l  211 (460)
T PRK12403        139 WQVLGKPQKKIMIGRWNGY-----HGSTLA--ATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQL  211 (460)
T ss_pred             HHhhCCCCCcEEEEECCCc-----CcccHh--hhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHH
Confidence                 3444443 333332     222110  11111110           111221110 00000        113556


Q ss_pred             HHHhhh---cCCcEEEEcC--CCCCCCCC----HHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEec
Q 010008          235 EKTAIL---FRPKLIIAGA--SAYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTT  302 (520)
Q Consensus       235 e~~i~~---~~pklIi~~~--s~~p~~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S  302 (520)
                      ++.+..   .+..+||+..  ++.+...+    +++++++|+++|+++|+|++| .|+--.|.. . .-+. ..|+++  
T Consensus       212 e~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~-tGfGRtG~~~a~e~~gv~PDiv~--  288 (460)
T PRK12403        212 EEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVI-GGFGRTGEWFAHEHFGFEPDTLS--  288 (460)
T ss_pred             HHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc-cCCCcCchhhhhhhcCCCCCeEE--
Confidence            555532   1344566652  22222344    899999999999999999998 343211210 0 0111 258887  


Q ss_pred             cCcccCCC--CceEEEeeCCCcchhhHHHhhcc--cC--CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHH-HHHH
Q 010008          303 THKSLRGP--RGGMIFFKKDPVLGVELESAINN--AV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVV-SNCR  375 (520)
Q Consensus       303 ~hK~l~Gp--rgG~I~~~~~~~~~~~l~~~i~~--~~--~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~-~na~  375 (520)
                      +.|.|+|.  ..|.+++++      ++.+.+..  ..  ..++.+++.. ..++..++|+.+.+++   ..+++. ++.+
T Consensus       289 ~gK~lggG~~Piga~v~~~------~i~~~~~~~~~~~~~~~T~~gnPl-~~Aaala~L~~i~~~~---l~~~~~~~~g~  358 (460)
T PRK12403        289 IAKGLTSGYVPMGGLVLSK------RIAEALVEQGGVFAHGLTYSGHPV-AAAVAIANLKALRDEG---VVTRVKDDTGP  358 (460)
T ss_pred             EcccccccccceEEEEECH------HHHHHHhcCCCccccCCCCCCCHH-HHHHHHHHHHHHHhcc---HHHHHHHHHHH
Confidence            45999643  345555665      55555432  11  2233344333 3333334677665433   345554 5666


Q ss_pred             HHHHHHHH--CCCEEecCCC-CCeeEEEEecCCC-----CC-----HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEE
Q 010008          376 ALASRLVE--LGYKLVSGGS-DNHLVLVDLRPMG-----ID-----GARVEKILDMASITLNKNSVPGDKSALVPGGIRI  442 (520)
Q Consensus       376 ~l~~~L~~--~G~~v~~~gt-~~~~~~vd~~~~g-----~~-----~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRi  442 (520)
                      +|.+.|++  ..+.++..-+ ...+.-+.+....     ..     ...+...+.+.||.+...          .+.+|+
T Consensus       359 ~l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----------~~~~~l  428 (460)
T PRK12403        359 YLQRCLREVFGDHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEEGVIIRST----------LGRMIM  428 (460)
T ss_pred             HHHHHHHHHHhcCCCEEeEeecceEEEEEEccCccccccccchhHHHHHHHHHHHhCCEEEEec----------CCEEEE
Confidence            77777654  1233222101 1223334442111     01     122344557899998421          135888


Q ss_pred             ccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          443 GSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       443 g~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      ..| ++   ++++|++++.+.+++++...
T Consensus       429 ~Pp-l~---it~~eid~~~~~l~~al~~~  453 (460)
T PRK12403        429 APA-LV---AGRAEIDELVDKTRIAVDRT  453 (460)
T ss_pred             ECC-CC---CCHHHHHHHHHHHHHHHHHH
Confidence            644 54   56999999999999998653

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.30  E-value=2.8e-09  Score=113.02  Aligned_cols=322  Identities=15%  Similarity=0.079  Sum_probs=166.3

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC-CCCCCceeeecCChHHHHHHHHHhh--C
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQPLSGSPANFEVYTAI--L  180 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~-~~~~~~~~V~~~sGs~A~~~~l~al--l  180 (520)
                      .-.|.|.+|+...+......++.   ++ .++  .. .+++ +++.+++.- ..+.   .+..+|||+|+.+++.-.  .
T Consensus        49 h~~p~v~~a~~~ql~~~~~~~~~---~~-~~~--~~-~~la-~~l~~~~p~~~~~~---v~f~~sGseA~e~AlklAr~~  117 (420)
T TIGR00700        49 HSHPRVVDAVRTQVAEFTHTCFM---VT-PYE--GY-VALA-EKLNRIAPGSGPKK---SVFFNSGAEAVENAVKIARSY  117 (420)
T ss_pred             CCCHHHHHHHHHHHHhccCcccc---cc-CCh--HH-HHHH-HHHHHhCCCCCCCE---EEEeCCcHHHHHHHHHHHHHh
Confidence            45788888888777542111111   01 111  12 2233 456666632 1121   244689999999877632  2


Q ss_pred             CCCCEEEEcCCCCCccccccccccccccccccc-------------eEEEEEcccCCCC----CCC----CHHHHHHHhh
Q 010008          181 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-------------YFESMPYRLDEST----GLV----DYDMLEKTAI  239 (520)
Q Consensus       181 ~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~-------------~~~~v~~~~d~~~----~~i----D~d~le~~i~  239 (520)
                      ....+|+...-.|.|.- .+.      +++.+.             .+..++++.....    ...    +++.+++.+.
T Consensus       118 tgr~~ii~~~~~yHG~t-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (420)
T TIGR00700       118 TGRPGVVAFDHGFHGRT-NMT------MALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFV  190 (420)
T ss_pred             cCCCcEEEECCCcCCCc-HHH------HHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHH
Confidence            22356777765543321 010      111110             0111222210000    011    2456666653


Q ss_pred             ----hcCCcEEEEcCC-CCCC-CC----CHHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEeccCcc
Q 010008          240 ----LFRPKLIIAGAS-AYPR-DF----DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKS  306 (520)
Q Consensus       240 ----~~~pklIi~~~s-~~p~-~~----d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S~hK~  306 (520)
                          ..+..+||+..- ..++ ..    .+++|+++|++||+++|+|+.+ .|+...+...  ..+. ..|+++  ++|.
T Consensus       191 ~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~-tg~gr~g~~~a~~~~~~~pDi~~--lsK~  267 (420)
T TIGR00700       191 IDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQ-TGFARTGAMFACEHEGPEPDLIT--TAKS  267 (420)
T ss_pred             hhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecc-cCCcccchhHHHhhcCCCCCEEE--eecc
Confidence                124456776521 1112 22    3899999999999999999984 4554333110  1111 367766  6799


Q ss_pred             c-CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH--
Q 010008          307 L-RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE--  383 (520)
Q Consensus       307 l-~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~--  383 (520)
                      + +|++.|++++++      ++.+.+.........++......++++ +++.+.+.++.+   ++.+..+.+.+.|++  
T Consensus       268 l~~G~pig~v~~~~------~i~~~~~~~~~~~T~~~~pl~~aaa~a-~l~~l~~~~~~~---~~~~~g~~l~~~L~~l~  337 (420)
T TIGR00700       268 LADGLPLSGVTGRA------EIMDAPAPGGLGGTYAGNPLACAAALA-VLAIIESEGLIE---RARQIGRLVTDRLTTLK  337 (420)
T ss_pred             ccCCcceEEEEecH------HHHhhcCCCCcCCCCCcCHHHHHHHHH-HHHHHHhccHHH---HHHHHHHHHHHHHHHHH
Confidence            8 578889999987      676666543333334444444444443 566554444433   333334445555543  


Q ss_pred             --CC-CEEecCCCCCeeEEEEecCC--CC-C---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCH
Q 010008          384 --LG-YKLVSGGSDNHLVLVDLRPM--GI-D---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSE  454 (520)
Q Consensus       384 --~G-~~v~~~gt~~~~~~vd~~~~--g~-~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~  454 (520)
                        .+ +..+.+ . ..++++.+...  .. +   ...+.+.+.+.||.+    .|+..  + ...|||+.+..    +++
T Consensus       338 ~~~~~~~~vrg-~-G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i----~p~~~--f-~~~lRl~p~l~----~~~  404 (420)
T TIGR00700       338 AVDPRIGDVRG-L-GAMIAVELVDPGTTEPDAGLAERIATAAHAAGLLL----LTCGM--F-GNIIRFLPPLT----IGD  404 (420)
T ss_pred             hhCCCEEEeec-c-ceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEE----eccCC--C-CCEEEEECCCC----cCH
Confidence              22 222222 2 23445544221  11 1   233455567899998    44321  1 36899986532    458


Q ss_pred             HHHHHHHHHHHHHHH
Q 010008          455 KEFVAIADFIHEGVE  469 (520)
Q Consensus       455 ~d~~~la~~i~~~l~  469 (520)
                      +++++.++.|.+++.
T Consensus       405 ~~l~~~~~~l~~~l~  419 (420)
T TIGR00700       405 ELLSEGLDILCAILA  419 (420)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999988764

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.29  E-value=9.2e-09  Score=109.07  Aligned_cols=320  Identities=13%  Similarity=0.113  Sum_probs=167.3

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-CCC
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKP  182 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al-l~p  182 (520)
                      .-.|.|.+|+...+.+....++       .++  ..+| + .+++.++++...+.   ....+||++|+.+++... .-.
T Consensus        69 h~~p~v~~ai~~q~~~~~~~~~-------~~~--~~~~-l-a~~L~~~~~~~~~~---v~f~~SGsEA~e~AiklAr~~t  134 (433)
T PRK00615         69 HSHPKICDAIQQGAERGTSYGL-------TSE--QEIL-F-AEELFSYLGLEDHK---IRFVSSGTEATMTAVRLARGIT  134 (433)
T ss_pred             CCCHHHHHHHHHHHHhCCCCCC-------CCH--HHHH-H-HHHHHHhCCCCcCE---EEEeCchHHHHHHHHHHHHHhh
Confidence            3578888888887764321111       112  1222 3 35677777543221   244589999999887643 223


Q ss_pred             C-CEEEEcCCCCCccccccccccccccccccceEEE--EEc---ccCCCC---CCCCHHHHHHHhhhc--CCcEEEEcC-
Q 010008          183 H-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES--MPY---RLDEST---GLVDYDMLEKTAILF--RPKLIIAGA-  250 (520)
Q Consensus       183 G-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~--v~~---~~d~~~---~~iD~d~le~~i~~~--~pklIi~~~-  250 (520)
                      | .+|+...-.|.|+-.. . ..  .++..+.....  ..+   +..+..   ..-|++++++.+..+  +..+||+.. 
T Consensus       135 gr~~ii~~~~~yHG~td~-~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv  210 (433)
T PRK00615        135 GRSIIIKFLGCYHGHADT-L-LQ--GISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPI  210 (433)
T ss_pred             CCCEEEEEcCccCCCCcc-c-Cc--ccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCC
Confidence            4 5677766544332100 0 00  11111110000  000   000000   113788888888643  345666652 


Q ss_pred             -CCCCCCCC----HHHHHHHHHHhCCEEEEechhhccccccccc--CCCCC-cccEEEeccCcccC-CCCceEEEeeCCC
Q 010008          251 -SAYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDP  321 (520)
Q Consensus       251 -s~~p~~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~--~~p~~-~aDiv~~S~hK~l~-GprgG~I~~~~~~  321 (520)
                       ++.+...+    +++|+++|++||+++|+|++| .|+ -.|..  ..-+. ..|+++  +.|.++ |..+|++++++  
T Consensus       211 ~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~-tG~-R~G~~ga~~~~gv~PDi~~--~gK~lggG~p~~av~~~~--  284 (433)
T PRK00615        211 CANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVV-TGF-RVAQGGAAAIYHVKPDITV--YGKILGGGLPAAAVVAHK--  284 (433)
T ss_pred             CCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccc-ccc-cccHhHHHHhcCCCCCeEE--EcccccCCcceeeeeecH--
Confidence             22222333    569999999999999999998 465 22210  00011 368876  569996 44578899988  


Q ss_pred             cchhhHHHhhcc--cCCC-CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH----CCCEEecCCCC
Q 010008          322 VLGVELESAINN--AVFP-GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGYKLVSGGSD  394 (520)
Q Consensus       322 ~~~~~l~~~i~~--~~~p-~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~----~G~~v~~~gt~  394 (520)
                          ++.+.+..  ..+. ++.+++.. .+++...+|+.+.+++   ..+++.++.++|.+.|++    .|+++...+ .
T Consensus       285 ----~i~~~~~~~~~~~~~~T~~g~p~-~~aa~la~L~~i~~~~---~~~~~~~~g~~l~~~l~~~~~~~g~~v~~~r-~  355 (433)
T PRK00615        285 ----SIMDHLAPEGTIFQAGTLSGNPL-AMAAGKASINLCREQG---FYTQLSTLEQNFLSPIEEMIRSQGFPVSLVR-Y  355 (433)
T ss_pred             ----HHHhhhcCCCCcccCCCCcccHH-HHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHcCCCeEEEe-e
Confidence                66666532  1121 22233333 3444334677665433   355566666666555543    466543221 1


Q ss_pred             CeeEEEEecCCCC---------C---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHH
Q 010008          395 NHLVLVDLRPMGI---------D---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIAD  462 (520)
Q Consensus       395 ~~~~~vd~~~~g~---------~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~  462 (520)
                      .-++.+.+.....         +   ...+.+.|.+.||.+.....|       ...+        +..++++|++++++
T Consensus       356 G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~-------~~~l--------s~~ht~~did~~~~  420 (433)
T PRK00615        356 GSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPFE-------ASFL--------SSAHSMENLDYAQN  420 (433)
T ss_pred             ceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCcccc-------ccce--------ecCCCHHHHHHHHH
Confidence            2233334422110         1   124667777899998432111       1112        22367999999999


Q ss_pred             HHHHHHHHH
Q 010008          463 FIHEGVEIT  471 (520)
Q Consensus       463 ~i~~~l~~~  471 (520)
                      ++++++...
T Consensus       421 a~~~~~~~~  429 (433)
T PRK00615        421 VLIDSLEKV  429 (433)
T ss_pred             HHHHHHHHH
Confidence            999998753

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.28  E-value=6e-09  Score=110.08  Aligned_cols=323  Identities=14%  Similarity=0.109  Sum_probs=166.2

Q ss_pred             CChHHHHHHHhhhhhcc-CCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCC-CCceeeecCChHHHHHHHHHhh--
Q 010008          104 FTSRAVMEAVGSCLTNK-YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDEN-KWGVNVQPLSGSPANFEVYTAI--  179 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~-y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~-~~~~~V~~~sGs~A~~~~l~al--  179 (520)
                      .-.|.|.+|+...+.+. +..+.   .+  .++   ...++ .+++.++...... ...+.+..+||++|+..++...  
T Consensus        51 h~~p~v~~ai~~ql~~~~~~~~~---~~--~~~---~~~~l-ae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~  121 (412)
T TIGR02407        51 HNNPKLKQALIDYLADDGIIHSL---DM--ATE---AKREF-LETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARK  121 (412)
T ss_pred             CCCHHHHHHHHHHHhhccceecc---cc--CcH---HHHHH-HHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhh
Confidence            45788888888777532 21111   11  111   11222 2455555321110 0002222479999999887643  


Q ss_pred             CCCCCEEEEcCCCCCccccccccccccccccccce----------EEEEEcccCC-CC-CCCCHHHHHHHhhhc-----C
Q 010008          180 LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY----------FESMPYRLDE-ST-GLVDYDMLEKTAILF-----R  242 (520)
Q Consensus       180 l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~----------~~~v~~~~d~-~~-~~iD~d~le~~i~~~-----~  242 (520)
                      .....+|+...-.|.|.- .+      .++.++..          ...+.+|... .. ..-|++.+++.+.++     +
T Consensus       122 ~tgr~~ii~~~~~yHG~t-~~------als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~  194 (412)
T TIGR02407       122 VTGRSNVVSFTNAFHGMT-LG------SLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDL  194 (412)
T ss_pred             hcCCCeEEEECCCcCCch-HH------HHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCc
Confidence            223367888776543321 11      01111100          0112222110 00 012466788777532     3


Q ss_pred             CcEEEEcCC-CCCC-----CCCHHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEeccCcccC--CCC
Q 010008          243 PKLIIAGAS-AYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR--GPR  311 (520)
Q Consensus       243 pklIi~~~s-~~p~-----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S~hK~l~--Gpr  311 (520)
                      +.+||+..- +..+     ..-+++|+++|+++|+++|.|+.+. |+--.|.. . .... ..|++++|  |++.  |.+
T Consensus       195 ~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-G~GRtG~~~a~~~~~v~PDi~~~~--K~lg~~G~p  271 (412)
T TIGR02407       195 PAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQA-GCGRTGTFFSFEPAGIEPDIVCLS--KSISGYGLP  271 (412)
T ss_pred             eEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCccchhHHhcccCCCCCEEEec--hhccCCccc
Confidence            466776522 1122     2248899999999999999999964 43111110 0 0011 36888755  9984  556


Q ss_pred             ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHHHHHH----CC-
Q 010008          312 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH-AQSPEFKVYQNKVVSNCRALASRLVE----LG-  385 (520)
Q Consensus       312 gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~-~~~~~~~~~~~~i~~na~~l~~~L~~----~G-  385 (520)
                      .|++++++      ++ ..+.........++... ..++..++++. +.+.   ++.+++.+..+++.+.|+.    .+ 
T Consensus       272 igav~~~~------~~-~~~~~~~~~~T~~gnpl-~~aaa~a~l~~~i~~~---~l~~~~~~~g~~l~~~l~~l~~~~~~  340 (412)
T TIGR02407       272 LALTLIKP------EL-DVWKPGEHNGTFRGNNL-AFVTATAALEYYWSDD---AFEKAVQRKSEIIQERLDRIVAEYPE  340 (412)
T ss_pred             eeEEEEch------hh-hccCCCccCCCCCccHH-HHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            79999987      44 33332222222333223 33332334664 4333   3345555556666666654    22 


Q ss_pred             CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHH
Q 010008          386 YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  465 (520)
Q Consensus       386 ~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~  465 (520)
                      +.....+ ...+.++.+... .....+.+.|.+.||.+...    .   .....||+..+..    ++++|++++.+.++
T Consensus       341 ~~~~vrg-~Gl~~~l~l~~~-~~~~~~~~~~~~~Gv~v~~~----~---~~~~~lr~~p~l~----~t~~~i~~~~~~l~  407 (412)
T TIGR02407       341 LIKQVRG-RGLMQGIECGDG-DLAGKIAKAAFENGLIIETS----G---PNDEVIKLLPPLT----IDEETLQQGLDILE  407 (412)
T ss_pred             ceEeeec-ceeEEEEEecCh-HHHHHHHHHHHHCCCEEecc----C---CCCCEEEEECCCC----CCHHHHHHHHHHHH
Confidence            2111111 234456666431 12356777888899998531    1   1245799976643    56999999999999


Q ss_pred             HHHH
Q 010008          466 EGVE  469 (520)
Q Consensus       466 ~~l~  469 (520)
                      +++.
T Consensus       408 ~~l~  411 (412)
T TIGR02407       408 QAVE  411 (412)
T ss_pred             HHHh
Confidence            8874

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.27  E-value=3.1e-09  Score=113.24  Aligned_cols=323  Identities=15%  Similarity=0.081  Sum_probs=167.9

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-CCCC
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPH  183 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al-l~pG  183 (520)
                      -.|.|.+|+...+.... .  ....++ .++...    ...+++++++.-...+  -....+||++|+.+++... .-.|
T Consensus        59 ~~p~v~~Ai~~ql~~~~-~--~~~~~~-~~~~~~----~lae~L~~~~p~~~~~--~v~f~~SGseA~e~AiklAr~~tg  128 (445)
T PRK08593         59 APPRVVEAIKAQADKFI-H--YTPAYM-YHEPLV----RLAKKLCELAPGDFEK--RVTFGLSGSDANDGIIKFARAYTG  128 (445)
T ss_pred             CCHHHHHHHHHHHHhcc-C--cccccc-CCHHHH----HHHHHHHHhCCCCCCC--EEEECCchHHHHHHHHHHHHHhhC
Confidence            46888888877765321 1  110111 122222    2335677776432111  1234589999999888642 1123


Q ss_pred             -CEEEEcCCCCCcccccccccccccccccc-------------ceEEEEEcccCCC--CCCCC-------HHHHHHHhhh
Q 010008          184 -DRIMGLDLPHGGHLSHGFMTPKRRVSGTS-------------IYFESMPYRLDES--TGLVD-------YDMLEKTAIL  240 (520)
Q Consensus       184 -D~Vl~~~~~~~ghls~g~~~~~~~v~~~g-------------~~~~~v~~~~d~~--~~~iD-------~d~le~~i~~  240 (520)
                       .+|+..+-.|.|.. .+.      +++.+             ..+..++++-...  ....+       ++++++.+..
T Consensus       129 r~~ii~~~~~YHG~t-~~a------ls~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (445)
T PRK08593        129 RPYIISFTNAYHGST-YGS------LSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEK  201 (445)
T ss_pred             CCeEEEECCCcCCCc-HHH------HhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHh
Confidence             46777765543321 110      11111             0012223221000  00111       2344444432


Q ss_pred             ----cCCcEEEEcCC-CCCC-CCC----HHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEeccCccc
Q 010008          241 ----FRPKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSL  307 (520)
Q Consensus       241 ----~~pklIi~~~s-~~p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S~hK~l  307 (520)
                          .+..+||+... ...+ ..+    +++++++|+++|+++|+|++|. |+-..|...  .-+. ..|++++  .|.+
T Consensus       202 ~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~t-g~GrtG~~~a~~~~gv~pDi~t~--gK~l  278 (445)
T PRK08593        202 YLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQ-GLGRTGKWSSISHFNITPDLMSF--GKSL  278 (445)
T ss_pred             hcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcCchHHHHHhcCCCCCEeee--cccc
Confidence                24567777632 2222 233    8999999999999999999963 332122110  0011 2577754  5998


Q ss_pred             C-CCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--
Q 010008          308 R-GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--  384 (520)
Q Consensus       308 ~-GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--  384 (520)
                      + |.++|++++++      ++.+.+.......+.+++... .++..++|+.+.++   +..+++.+..++|.+.|++.  
T Consensus       279 ~~G~p~gav~~~~------~i~~~~~~~~~~~T~~~~pl~-~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~  348 (445)
T PRK08593        279 AGGMPMSAIVGRK------EIMESLEAPAHLFTTGANPVS-CAAALATIDMIEDE---SLLQRSAEKGEYARKRFDQWVS  348 (445)
T ss_pred             cCCcccEEEEEcH------HHHhhhccCCCCCCCCCCHHH-HHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHh
Confidence            5 56689999987      676666432222233443333 33333456666443   34566666677777777652  


Q ss_pred             CCEEecC--CCCCeeEEEEecCC---CC-C---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHH
Q 010008          385 GYKLVSG--GSDNHLVLVDLRPM---GI-D---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK  455 (520)
Q Consensus       385 G~~v~~~--gt~~~~~~vd~~~~---g~-~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~  455 (520)
                      .+.++..  |. ..+.-+.+...   .. +   ...+...|.+.||.+...         ....+|+..+..    ++++
T Consensus       349 ~~~~v~~vrG~-Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~---------~~~~lr~~p~l~----~t~~  414 (445)
T PRK08593        349 KYNFVGDVRGY-GLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAV---------AGNVLRFQPPLV----ITYE  414 (445)
T ss_pred             cCCcEEEEecc-ceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEecc---------CCCEEEEECCCc----cCHH
Confidence            2333221  11 12222333211   11 1   234667777899998421         135799976633    5699


Q ss_pred             HHHHHHHHHHHHHHHH
Q 010008          456 EFVAIADFIHEGVEIT  471 (520)
Q Consensus       456 d~~~la~~i~~~l~~~  471 (520)
                      |++++.+.+++++...
T Consensus       415 ~id~~~~~l~~~l~~~  430 (445)
T PRK08593        415 QLDTALNTIEQAFTAL  430 (445)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998753

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=99.27  E-value=7.4e-12  Score=126.01  Aligned_cols=245  Identities=18%  Similarity=0.231  Sum_probs=54.3

Q ss_pred             CCCCChHHHHHHHhhhhhcc----C--CCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHH
Q 010008          101 SENFTSRAVMEAVGSCLTNK----Y--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE  174 (520)
Q Consensus       101 sen~~~~~V~ea~~s~l~~~----y--~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~  174 (520)
                      +-.++++.+.+++.....+.    |  ..|-.|.||       +.++    +.+++++|++..     +.+++.+.|++.
T Consensus        14 GRs~l~~~a~~a~~~~a~~Y~nLE~dl~~G~Rg~R~-------~~v~----~ll~~ltgAeaA-----~VvNnnaAAv~L   77 (367)
T PF03841_consen   14 GRSPLSEEAIEAVAEVASGYSNLEYDLETGKRGSRY-------AHVE----ELLCELTGAEAA-----LVVNNNAAAVLL   77 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccc-------cccc----cccccccccccc-----cccccccccccc
Confidence            33467788888876554322    1  114444443       2333    567889999864     223666688888


Q ss_pred             HHHhhCCCCCEEEEcCC---CCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEc-C
Q 010008          175 VYTAILKPHDRIMGLDL---PHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG-A  250 (520)
Q Consensus       175 ~l~all~pGD~Vl~~~~---~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~-~  250 (520)
                      ++.++. +|.+|++..-   +.||.+.  .   ...+..+|.  ..+.++..   ..-.+++++++|++ +|.+|+-- .
T Consensus        78 ~l~~la-~~~EvIvsRGelVeiGgsFR--i---p~vm~~sGa--~lvEVGtt---N~t~~~Dye~AI~e-~Ta~ll~Vh~  145 (367)
T PF03841_consen   78 ALNTLA-KGKEVIVSRGELVEIGGSFR--I---PDVMRQSGA--RLVEVGTT---NRTHLSDYEKAITE-NTAALLKVHT  145 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccc-cccccccccccccccccccc--c---ccccccccc--cccccccc---cccccccccccccc-cccccccccc
Confidence            888775 4667776532   2343321  0   012344554  55565532   34456777889988 88877544 3


Q ss_pred             CCCC-----CCCCHHHHHHHHHHhCCEEEEechhhccccc----cccc--CC---CCC-cccEEEeccCcccCCCCceEE
Q 010008          251 SAYP-----RDFDYPRMRQIADAVGALLMMDMAHISGLVA----ASVV--AD---PFK-YCDVVTTTTHKSLRGPRGGMI  315 (520)
Q Consensus       251 s~~p-----~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~----~~~~--~~---p~~-~aDiv~~S~hK~l~GprgG~I  315 (520)
                      |||-     ...+++++.++|++||+++++|.+  +|...    .+..  ++   .+. ++|+|+||..|-|.||+.|+|
T Consensus       146 Sn~~i~GFt~~~~~~el~~la~~~~lp~i~Dlg--sG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQaGiI  223 (367)
T PF03841_consen  146 SNFRIQGFTGEVSLEELAELAKEHGLPVIVDLG--SGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQAGII  223 (367)
T ss_dssp             ---------------HHHHHHHHHT--EEEE-T--THHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S-EEE
T ss_pred             cccccccccccccHHHHHHHHhhcCCcEEEECC--CCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCCeEEE
Confidence            5552     267899999999999999999985  44331    1211  11   122 899999999999999999999


Q ss_pred             EeeCCCcchhhHHHhhcccC-CCCCCCCChHHHHHHHHHHHHHhcCch-----------hHHHHHHHHHHHHHHHHHHHH
Q 010008          316 FFKKDPVLGVELESAINNAV-FPGLQGGPHNHTIGGLAVCLKHAQSPE-----------FKVYQNKVVSNCRALASRLVE  383 (520)
Q Consensus       316 ~~~~~~~~~~~l~~~i~~~~-~p~~~g~p~~~~iaala~al~~~~~~~-----------~~~~~~~i~~na~~l~~~L~~  383 (520)
                      ++++      ++.+++++.- ...+-  ..-..++++..+|+....++           +..-.+.+.++++.|...|..
T Consensus       224 ~Gkk------~lI~~lk~~pl~Ralr--vdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L~~rA~~l~~~l~~  295 (367)
T PF03841_consen  224 VGKK------ELIEKLKKHPLGRALR--VDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEELRARAERLAAQLKA  295 (367)
T ss_dssp             EEEH------HHHHHHHHHHHTTT-B----HHHHHHHHHHHHH-------------------------------------
T ss_pred             EeCH------HHHHHHhhCCCcceEe--eCHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccc
Confidence            9999      7888775431 11111  12346777877777554311           122345556667777776655

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.26  E-value=9.1e-09  Score=109.20  Aligned_cols=331  Identities=15%  Similarity=0.123  Sum_probs=167.4

Q ss_pred             CChHHHHHHHhhhhhc-cCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCceeeecCChHHHHHHHHHhh-
Q 010008          104 FTSRAVMEAVGSCLTN-KYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGSPANFEVYTAI-  179 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~-~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~sGs~A~~~~l~al-  179 (520)
                      .-.|.|.+|+...+.. .+..+.   . +. ++   ...+++ +++.+++..+  .+.. +.+..+||++|+..++... 
T Consensus        55 h~~p~v~~ai~~ql~~~~~~~~~---~-~~-~~---~~~~la-e~l~~~~~~~~~~~~~-~~f~~~sGseA~e~AlklAr  124 (425)
T PRK09264         55 HNNPVLKQALIDYLQRDGITHGL---D-MH-TT---AKREFL-ETFEETILKPRGLDYK-VQFTGPTGTNAVEAALKLAR  124 (425)
T ss_pred             CCCHHHHHHHHHHHHhccccccc---c-cC-cH---HHHHHH-HHHHHhhcCCcCCCce-EEEeCCCHHHHHHHHHHHHH
Confidence            3468888888777653 222111   1 11 11   112222 4555554222  1101 2222369999999887643 


Q ss_pred             -CCCCCEEEEcCCCCCccccccccc------cccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc-----CCcEEE
Q 010008          180 -LKPHDRIMGLDLPHGGHLSHGFMT------PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLII  247 (520)
Q Consensus       180 -l~pGD~Vl~~~~~~~ghls~g~~~------~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~-----~pklIi  247 (520)
                       .....+|+...-.|.|.- .+...      .+.........+..++++.......-|++++++.+...     +..+||
T Consensus       125 ~~tgr~~ii~~~~~yHG~t-~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi  203 (425)
T PRK09264        125 KVTGRTNIVAFTNGFHGMT-LGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVI  203 (425)
T ss_pred             HhcCCCeEEEECCccCCcc-HHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEE
Confidence             222357887765543321 11000      00000000001122232210000012677888887642     245666


Q ss_pred             EcC-CCCCC-----CCCHHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEeccCcccC--CCCceEEE
Q 010008          248 AGA-SAYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR--GPRGGMIF  316 (520)
Q Consensus       248 ~~~-s~~p~-----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S~hK~l~--GprgG~I~  316 (520)
                      +.. ....+     ...+++|+++|++||+++|+|++|. |+.-.|.. . ..+. ..|++++|  |.|.  |-+.|+++
T Consensus       204 ~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-G~GrtG~~~~~~~~~v~PDi~t~~--K~l~~~G~pigav~  280 (425)
T PRK09264        204 VETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQA-GCGRTGTFFSFERAGITPDIVTLS--KSISGYGLPMALVL  280 (425)
T ss_pred             EecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhh-CCccccHHHHHhhcCCCCCEEEec--cccCCCccceEEEE
Confidence            652 11222     2258999999999999999999975 43211110 0 0011 35887664  9984  44568898


Q ss_pred             eeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCEE-ec--C
Q 010008          317 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKL-VS--G  391 (520)
Q Consensus       317 ~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~v-~~--~  391 (520)
                      +++      ++ ..+.........++......+++ .++++....  .+..+++.++.++|.+.|++.  .+.. ..  .
T Consensus       281 ~~~------~i-~~~~~~~~~~T~~gnp~~~aaa~-a~l~~~~~~--~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vr  350 (425)
T PRK09264        281 IKP------EL-DVWKPGEHNGTFRGNNLAFVTAT-AALEEYWSD--DAFEKEVKAKGELVRERLEEIAAKYPGLGAEVR  350 (425)
T ss_pred             Ech------hh-hccCCCccCCCCCCCHHHHHHHH-HHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHhCCCceecce
Confidence            887      44 23322222222333223333332 345322211  234566666777777776552  2221 11  1


Q ss_pred             CCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          392 GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       392 gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      + ...+.++.+... .....+.+.|.+.||.+...    .   .....||++.+..    ++++|++++.+.+.+++...
T Consensus       351 g-~Gl~~~i~l~~~-~~~~~l~~~~~~~Gv~~~~~----~---~~~~~lr~~p~l~----~t~~ei~~~~~~l~~~l~~~  417 (425)
T PRK09264        351 G-RGMMQGIDFGDG-ELAGKIAAEAFENGLIIETS----G---PEDEVVKLLPPLT----IDEEELEEGLDILEEAVAEV  417 (425)
T ss_pred             e-cccEEEEEecCh-HHHHHHHHHHHHCCCEEecc----C---CCCCEEEEeCCCC----CCHHHHHHHHHHHHHHHHHH
Confidence            2 223445555421 12345777788899998431    1   1236799976533    45899999999999998753

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=99.26  E-value=1.1e-09  Score=114.75  Aligned_cols=292  Identities=23%  Similarity=0.267  Sum_probs=180.3

Q ss_pred             HHHHHHcCCCCCCCceeeecCChHHH---HHHHHHhhCC---CCCE--EEEcCCCCCccccccccccccccccccceEEE
Q 010008          146 KRALAAFNLDENKWGVNVQPLSGSPA---NFEVYTAILK---PHDR--IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES  217 (520)
Q Consensus       146 ~~~~~lfg~~~~~~~~~V~~~sGs~A---~~~~l~all~---pGD~--Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~  217 (520)
                      +++++..|.|.    +.+||.||+++   -..++++.+.   .|.+  .|++--.||-...        ...+.|  .++
T Consensus       589 ~~Lc~iTG~D~----~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPA--------SA~Mag--mkv  654 (1001)
T KOG2040|consen  589 KDLCEITGFDS----FSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPA--------SAAMAG--MKV  654 (1001)
T ss_pred             HHhheeecccc----eeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChh--------hHHhcC--CEE
Confidence            78999999986    58999999854   4456666642   3333  4444434443321        223455  477


Q ss_pred             EEcccCCCCCCCCHHHHHHHhhhcCC--cEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCC
Q 010008          218 MPYRLDESTGLVDYDMLEKTAILFRP--KLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF  293 (520)
Q Consensus       218 v~~~~d~~~~~iD~d~le~~i~~~~p--klIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~  293 (520)
                      ++++.+ .+|.||+.+|++.+.+++-  .++.+.+|+.-+  ..+++.++++.++||--|..|+|.--..+  |+ -.|-
T Consensus       655 vpV~~~-~~G~id~~dLk~kaekh~~~Laa~MvTYPST~GvfE~~i~d~cd~iHehGGQVYlDGANMNAqV--Gl-c~pG  730 (1001)
T KOG2040|consen  655 VPVGCD-ANGNIDMVDLKAKAEKHKDNLAALMVTYPSTHGVFEEGIDDICDIIHEHGGQVYLDGANMNAQV--GL-CRPG  730 (1001)
T ss_pred             EEeecc-CCCCccHHHHHHHHHHhhhhhheeEEecccccccccccHHHHHHHHHhcCCEEEecCCCcccee--cc-cCCc
Confidence            787777 5799999999999887644  356666666444  55799999999999999999987432222  11 1222


Q ss_pred             C-cccEEEeccCcccC------CCCceEEEeeCCCcchhhHHHhhcc--cCCC----------CCCCCC-hHHHHHHHHH
Q 010008          294 K-YCDVVTTTTHKSLR------GPRGGMIFFKKDPVLGVELESAINN--AVFP----------GLQGGP-HNHTIGGLAV  353 (520)
Q Consensus       294 ~-~aDiv~~S~hK~l~------GprgG~I~~~~~~~~~~~l~~~i~~--~~~p----------~~~g~p-~~~~iaala~  353 (520)
                      . |+|+.--.+||||+      ||..|-|-+++.      ++..+-.  .+.+          .....| ....|..+..
T Consensus       731 d~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~H------LapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISw  804 (1001)
T KOG2040|consen  731 DIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH------LAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISW  804 (1001)
T ss_pred             cccccceeecccceeeecCCCCCCCCCccchhhh------ccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHH
Confidence            2 78999999999984      343355655552      2221110  0000          000011 0112333333


Q ss_pred             H-HHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecC---CCCCeeEEEEecCC----CCCHHHHHHHHhhcCeEEcC
Q 010008          354 C-LKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG---GSDNHLVLVDLRPM----GIDGARVEKILDMASITLNK  425 (520)
Q Consensus       354 a-l~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~---gt~~~~~~vd~~~~----g~~~~~~~~~L~~~gI~v~~  425 (520)
                      | ++.+...++++-.+-..-|+.+++++|+.. ++++..   +...|-+++|++++    |+...++.++|.++|...-.
T Consensus       805 aYikmMG~~GL~~as~~AiLNaNYMakRLe~h-Ykil~~~~~~~vaHEFIlD~r~fK~~agieavDvAKRL~DYgFHaPT  883 (1001)
T KOG2040|consen  805 AYIKMMGSGGLKDASKIAILNANYMAKRLESH-YKILFRGENGLVAHEFILDLRPFKKTAGIEAVDVAKRLMDYGFHAPT  883 (1001)
T ss_pred             HHHHHhcccccchhhHHHhhhhHHHHHHHhhc-cceeEecCCcceeeeeeeechhhccccCCcHHHHHHHHHhccCCCCc
Confidence            3 455555566666677788999999999874 555432   34567778898764    57778899999999987543


Q ss_pred             CCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHHH
Q 010008          426 NSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITL  472 (520)
Q Consensus       426 ~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~~  472 (520)
                      -+.|      .++.+-|-.    |..-+.+|++++++++-.+-+...
T Consensus       884 mswP------V~gtLMIEP----TESE~k~ElDRfcdAliSIreEI~  920 (1001)
T KOG2040|consen  884 MSWP------VAGTLMIEP----TESEDKAELDRFCDALISIREEIA  920 (1001)
T ss_pred             cccc------cCCceEecc----CccccHHHHHHHHHHHHHHHHHHH
Confidence            3333      455555532    223456777777777655544333

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.26  E-value=7.7e-09  Score=110.11  Aligned_cols=322  Identities=17%  Similarity=0.124  Sum_probs=167.3

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC---
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---  180 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all---  180 (520)
                      .-.|.|.+|+...+.+ ...+..   +...++.   .. ...+++.+++.-..+.   ....+|||+|+.+++....   
T Consensus        62 h~~p~v~~ai~~ql~~-l~~~~~---~~~~~~~---~~-~la~~l~~~~p~~~~~---v~f~~sGseA~e~AlklAr~~~  130 (442)
T PRK13360         62 HGRPEIVEAVRAQAGE-LDYAPA---FQMGHPK---AF-ELANRIAEIAPGGLNH---VFFTNSGSESVDTALKIALAYH  130 (442)
T ss_pred             CCCHHHHHHHHHHHHh-CCCccc---CCcCCHH---HH-HHHHHHHHhCCCCCCE---EEEeCCcHHHHHHHHHHHHHHH
Confidence            4578888888777653 211111   1111221   12 2335677776322221   2446899999998876321   


Q ss_pred             ----CC-CCEEEEcCCCCCccccccccccccccccccc------------eEEEEEcccCCCC--CCC--------CHHH
Q 010008          181 ----KP-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDEST--GLV--------DYDM  233 (520)
Q Consensus       181 ----~p-GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~------------~~~~v~~~~d~~~--~~i--------D~d~  233 (520)
                          ++ ..+|+...-.|.|. +.+      .+++.|.            .+..++++.+...  +..        +.++
T Consensus       131 ~~~g~~~r~~ii~~~~~yHG~-t~g------als~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  203 (442)
T PRK13360        131 RARGEGSRTRLIGRERGYHGV-GFG------GISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADE  203 (442)
T ss_pred             HhcCCCCCcEEEEEcCCcCCc-cHh------hhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHH
Confidence                12 25788887655332 111      0111110            0112222211000  100        2457


Q ss_pred             HHHHhhhc---CCcEEEEcC--CCCCCCCC----HHHHHHHHHHhCCEEEEechhh-cccccccccCCCCC-cccEEEec
Q 010008          234 LEKTAILF---RPKLIIAGA--SAYPRDFD----YPRMRQIADAVGALLMMDMAHI-SGLVAASVVADPFK-YCDVVTTT  302 (520)
Q Consensus       234 le~~i~~~---~pklIi~~~--s~~p~~~d----~~~i~~ia~~~g~~li~D~Ah~-~gli~~~~~~~p~~-~aDiv~~S  302 (520)
                      +++++...   +..+||+..  +..+...+    +++|+++|+++|+++|+|++|. .|-........-+. ..|++++ 
T Consensus       204 le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDivt~-  282 (442)
T PRK13360        204 LERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLLTC-  282 (442)
T ss_pred             HHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCceeee-
Confidence            77777532   344566652  22222445    8999999999999999999983 33221111000011 3688755 


Q ss_pred             cCcccCC--CCceEEEeeCCCcchhhHHHhhccc------C-CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010008          303 THKSLRG--PRGGMIFFKKDPVLGVELESAINNA------V-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN  373 (520)
Q Consensus       303 ~hK~l~G--prgG~I~~~~~~~~~~~l~~~i~~~------~-~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~n  373 (520)
                       .|.|.|  -..|.+++++      ++.+.+...      . ..++.+++.. .+++...+|+.+.+++   ..+++.++
T Consensus       283 -gK~l~gG~~P~gav~~~~------~i~~~~~~~~~~~~~~~~~~T~~g~pl-~~aaa~a~L~~l~~~~---l~~~~~~~  351 (442)
T PRK13360        283 -AKGLTNGAIPMGAVFVSS------EIHDAFMQGPEAGIEFFHGYTYSGHPL-ACAAALATLDLYEREG---LLTRAARL  351 (442)
T ss_pred             -eeccccCccceEEEEEcH------HHHHHhhcCCccccccccCCCCCCCHH-HHHHHHHHHHHHHhCC---HHHHHHHH
Confidence             599964  2345566666      555544321      1 1223344333 3444444677665443   45666667


Q ss_pred             HHHHHHHHHHCC-CEEecC--CCCCeeEEEEecCC--CC--CHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCC
Q 010008          374 CRALASRLVELG-YKLVSG--GSDNHLVLVDLRPM--GI--DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPA  446 (520)
Q Consensus       374 a~~l~~~L~~~G-~~v~~~--gt~~~~~~vd~~~~--g~--~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~  446 (520)
                      .++|.+.|++.+ +..+..  |. ..+.-+.+.+.  +.  ....+.+.|.+.||.+...          ...+|+..+.
T Consensus       352 g~~l~~~l~~l~~~~~v~~vrG~-Gl~~~~~l~~~~~~~~~~~~~~~~~l~~~Gvl~~~~----------~~~lr~~Ppl  420 (442)
T PRK13360        352 APYWEDALHSLRDAPHVIDIRNL-GLVGAVELAPRDGKPGKRAYEVFLKCFEKGLMIRYT----------GDILALSPPL  420 (442)
T ss_pred             HHHHHHHHHHhhcCCCeeeeecc-ceEEEEEEecCCCCcchhHHHHHHHHHHCCcEEEec----------CCEEEEeCCC
Confidence            777878776532 322221  11 11222233221  11  1245666778899998431          2469997553


Q ss_pred             ccccCCCHHHHHHHHHHHHHHHHH
Q 010008          447 MTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       447 ~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                       +   ++++|++++.+.+.++++.
T Consensus       421 -~---~t~~eid~~~~~l~~~l~~  440 (442)
T PRK13360        421 -I---IEEAQIDELFDILAQALKE  440 (442)
T ss_pred             -c---cCHHHHHHHHHHHHHHHHH
Confidence             3   5699999999999998853

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.26  E-value=3.6e-09  Score=112.06  Aligned_cols=320  Identities=15%  Similarity=0.101  Sum_probs=172.5

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC---
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---  180 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all---  180 (520)
                      .-.|.|.+|+...+.+.. ....+ . + .++   ...++ .+++.+++....+.   .....|||+|+.+++....   
T Consensus        59 h~~p~i~~Ai~~q~~~~~-~~~~~-~-~-~~~---~~~~l-a~~L~~~~p~~~~~---v~f~~SGsEAve~AlklAr~~~  127 (428)
T PRK07986         59 YNHPQLNAAMKSQIDAMS-HVMFG-G-I-THP---PAIEL-CRKLVAMTPQPLEC---VFLADSGSVAVEVAMKMALQYW  127 (428)
T ss_pred             CCCHHHHHHHHHHHhhcC-Ccccc-c-c-CCH---HHHHH-HHHHHhhCCCCcCE---EEEeCCcHHHHHHHHHHHHHHH
Confidence            346888888877765321 11110 0 0 112   12222 35666666432221   2446899999998876432   


Q ss_pred             ----CCCCEEEEcCCCCCccccccccccccccccccc------e-------EEEEEcccCCCC--C-CCCHHHHHHHhhh
Q 010008          181 ----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------Y-------FESMPYRLDEST--G-LVDYDMLEKTAIL  240 (520)
Q Consensus       181 ----~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~------~-------~~~v~~~~d~~~--~-~iD~d~le~~i~~  240 (520)
                          ....+|+...-.|.|. +.+      .++..+.      .       +..++++.....  . .-|++++++.++.
T Consensus       128 ~~~g~~r~kii~~~~~yHG~-t~~------a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~  200 (428)
T PRK07986        128 QAKGEPRQRFLTLRHGYHGD-TFG------AMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAA  200 (428)
T ss_pred             HhcCCCCcEEEEECCCcCCC-cHh------hhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHh
Confidence                2236788887655332 111      0111110      0       011121110000  0 1256778877764


Q ss_pred             c--CCcEEEEcC--CCCCC-----CCCHHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEeccCcccC
Q 010008          241 F--RPKLIIAGA--SAYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR  308 (520)
Q Consensus       241 ~--~pklIi~~~--s~~p~-----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S~hK~l~  308 (520)
                      .  +..+||+..  ...++     ...+++|+++|+++|+++|+|++| .|+-..|.. . .-+. ..|+++  +.|.+.
T Consensus       201 ~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~-tG~GrtG~~fa~~~~gv~PDi~t--~gK~l~  277 (428)
T PRK07986        201 HRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIA-TGFGRTGKLFACEHAGIAPDILC--LGKALT  277 (428)
T ss_pred             CCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cCCccCCCeeeecccCCCCCEEE--echhhh
Confidence            2  334566643  23333     123899999999999999999998 664222211 0 0011 358886  569985


Q ss_pred             CC--CceEEEeeCCCcchhhHHHhhcccC-----CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 010008          309 GP--RGGMIFFKKDPVLGVELESAINNAV-----FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRL  381 (520)
Q Consensus       309 Gp--rgG~I~~~~~~~~~~~l~~~i~~~~-----~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L  381 (520)
                      |.  ..|.+++++      ++.+.+....     ...+.+++ ....++...+|+.+.+.+   ..+++.++.++|.+.|
T Consensus       278 gG~~p~~av~~~~------~i~~~~~~~~~~~~~~~~T~~g~-p~~~aaa~a~L~~i~~~~---~~~~~~~~g~~l~~~l  347 (428)
T PRK07986        278 GGTMTLSATLTTR------EVAETISNGEAGCFMHGPTFMGN-PLACAVANASLSLLESGD---WQQQVAAIEAQLREEL  347 (428)
T ss_pred             CCcccCcchhchH------HHHHHhhcCCCCccccCCCCCcC-HHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHH
Confidence            32  345666776      5666554311     12233443 333333334577665433   4666777777888887


Q ss_pred             HHC-CCEEecC--CCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHH
Q 010008          382 VEL-GYKLVSG--GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFV  458 (520)
Q Consensus       382 ~~~-G~~v~~~--gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~  458 (520)
                      ++. .+..+..  | ...+..+.+... .....+.+.|.+.||.+...          ...||+..| ++   ++++|++
T Consensus       348 ~~l~~~~~i~~vRg-~Gl~~~ve~~~~-~~~~~~~~~l~~~Gl~~~~~----------g~~i~~~Pp-l~---it~~ei~  411 (428)
T PRK07986        348 APLRDAPMVADVRV-LGAIGVVETTRP-VNMAALQRFFVEQGVWIRPF----------GKLIYLMPP-YI---ILPEQLQ  411 (428)
T ss_pred             HHHhcCCCEEeEec-cceEEEEEeCCc-ccHHHHHHHHHHCCcEEEec----------CCEEEEeCC-CC---CCHHHHH
Confidence            763 2332321  1 123444445322 23456778888999998421          147999644 44   5699999


Q ss_pred             HHHHHHHHHHHH
Q 010008          459 AIADFIHEGVEI  470 (520)
Q Consensus       459 ~la~~i~~~l~~  470 (520)
                      ++.+.+.+++..
T Consensus       412 ~~~~~l~~~l~~  423 (428)
T PRK07986        412 RLTAAVNRAVQD  423 (428)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998863

>PRK07046 aminotransferase; Validated

Probab=99.25  E-value=8.7e-09  Score=109.95  Aligned_cols=325  Identities=13%  Similarity=0.079  Sum_probs=171.6

Q ss_pred             ccceEecCCC-----CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh
Q 010008           94 KSLELIASEN-----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG  168 (520)
Q Consensus        94 ~~i~Liasen-----~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG  168 (520)
                      ..|+++.+-.     .-.|.|.+|+...+......+++       ++    .+....+++.++++.+.    + ...+||
T Consensus        76 ~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~~~~~~~-------~~----~~~~lAe~l~~~~~~~~----v-~F~nSG  139 (453)
T PRK07046         76 RYDDFCLGDTGAMFGHSPAPVARALAEQARRGLTTMLP-------SE----DAAWVGEELARRFGLPY----W-QVATTA  139 (453)
T ss_pred             EEEEecccccccccCCCCHHHHHHHHHHHHhCCCCCCC-------CH----HHHHHHHHHHHHhCCCE----E-EEECCH
Confidence            3466654321     34689999998887654322222       12    22224467777776442    2 346899


Q ss_pred             HHHHHHHHHhh--CCCCCEEEEcCCCCCccccccccc--cccc---cccccceE----EEEEcccCCCCCCCCHHHHHHH
Q 010008          169 SPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMT--PKRR---VSGTSIYF----ESMPYRLDESTGLVDYDMLEKT  237 (520)
Q Consensus       169 s~A~~~~l~al--l~pGD~Vl~~~~~~~ghls~g~~~--~~~~---v~~~g~~~----~~v~~~~d~~~~~iD~d~le~~  237 (520)
                      |+|+..++...  ....++|+...-.|.|+.......  ....   ....|...    ..+.++      .-|++.+++.
T Consensus       140 tEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~nd~~~l~~~  213 (453)
T PRK07046        140 TDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVE------FNDLAALEAA  213 (453)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeC------CCCHHHHHHH
Confidence            99999887643  223467887775543331000000  0000   00111100    011111      1378999988


Q ss_pred             hhhcCCcEEEEcCC-CCCC-CC----CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEEEeccCcccC-C
Q 010008          238 AILFRPKLIIAGAS-AYPR-DF----DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLR-G  309 (520)
Q Consensus       238 i~~~~pklIi~~~s-~~p~-~~----d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S~hK~l~-G  309 (520)
                      +...+..+||+..- .+.+ ..    -+++++++|+++|+++|.|+.+..+.-..+. ..-+. ..|++++  .|.+. |
T Consensus       214 l~~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~-~~~~gv~PDi~t~--gK~lggG  290 (453)
T PRK07046        214 LADGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGY-TRAHGLEPDFLVV--GKPIAGG  290 (453)
T ss_pred             hCCCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcch-hHHhCCCccceee--hhhhcCC
Confidence            85435667777622 2222 22    2799999999999999999997522111121 11011 3688875  59985 4


Q ss_pred             CCceEEEeeCCCcchhhHHHhhccc---------CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 010008          310 PRGGMIFFKKDPVLGVELESAINNA---------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASR  380 (520)
Q Consensus       310 prgG~I~~~~~~~~~~~l~~~i~~~---------~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~  380 (520)
                      ...|.+++++      ++.+.+...         ...++.++.... +++..+.|+.+.+++   ..+++.+..+.|.+.
T Consensus       291 ~Pi~av~g~~------~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~-~aa~~a~L~~l~~~~---~~~~~~~~g~~l~~~  360 (453)
T PRK07046        291 VPCAVYGFSA------ELAERAQAAKASAPPGHSGIGTTLSANALA-MAAMRATLAEVMTEA---AYAHMLALAARLAAG  360 (453)
T ss_pred             CcceeeeehH------HHHHHHhhccccCCCCCceeCCCCcccHHH-HHHHHHHHHHHhccc---HHHHHHHHHHHHHHH
Confidence            4468888887      566655421         011222333333 333333566665443   345555556667666


Q ss_pred             HHH----CCCEEecCCCCCeeEEEEecCCC----------CCH---HHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEc
Q 010008          381 LVE----LGYKLVSGGSDNHLVLVDLRPMG----------IDG---ARVEKILDMASITLNKNSVPGDKSALVPGGIRIG  443 (520)
Q Consensus       381 L~~----~G~~v~~~gt~~~~~~vd~~~~g----------~~~---~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig  443 (520)
                      |++    .++.....+... ++.+.+....          .+.   ..+...|.+.||.+.    |.      ...++++
T Consensus       361 L~~l~~~~~~~~~v~g~G~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~----~~------~~~~~~~  429 (453)
T PRK07046        361 LRAVIARHGLPWHVTRVGA-RVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGVLIT----PF------HNMMLVC  429 (453)
T ss_pred             HHHHHHhCCCCeEEEEeCc-EEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCCEEe----cc------cCcEEEe
Confidence            654    354322111111 2222221110          011   234455667899984    21      1346776


Q ss_pred             cCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          444 SPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       444 ~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      .+      ++++|++++.+++++++..
T Consensus       430 p~------~t~~did~~~~~~~~~l~~  450 (453)
T PRK07046        430 PA------TTAADVDRLVAAFDACLGE  450 (453)
T ss_pred             CC------CCHHHHHHHHHHHHHHHHH
Confidence            43      5689999999999998864

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.25  E-value=7.1e-09  Score=110.86  Aligned_cols=325  Identities=16%  Similarity=0.140  Sum_probs=168.1

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh--CC
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK  181 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al--l~  181 (520)
                      .-.|.|.+|+...+.+....+..  .+.  ++   . +....+++.+++.....+  -....+|||+|+.+++...  ..
T Consensus        70 h~~p~v~~ai~~q~~~~~~~~~~--~~~--~~---~-~~~la~~L~~~~p~~~~~--~v~f~~sGseA~e~AlklAr~~t  139 (451)
T PRK06918         70 HSHPKVKEALHKQVDQYIHTGFN--VMM--YE---P-YIELAEKLAALAPGSFDK--KVLFLNSGAEAVENAVKIARKYT  139 (451)
T ss_pred             CCCHHHHHHHHHHHHhccCcccc--ccc--cH---H-HHHHHHHHHHhCCCCCCC--EEEEcCCcHHHHHHHHHHHHHHh
Confidence            35788999988877643211111  111  11   1 222335677777532211  1245689999999887643  22


Q ss_pred             CCCEEEEcCCCCCccccccccccccccccccc-------------eEEEEEcccCC--CCCCCC-------HHHHHHHhh
Q 010008          182 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-------------YFESMPYRLDE--STGLVD-------YDMLEKTAI  239 (520)
Q Consensus       182 pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~-------------~~~~v~~~~d~--~~~~iD-------~d~le~~i~  239 (520)
                      -..+|+...-.|.|.-. +      .+++.+.             .+..++++...  ..+..+       .+.+++.+.
T Consensus       140 gr~~ii~~~~~yHG~t~-~------~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (451)
T PRK06918        140 KRQGIISFSRGFHGRTL-M------TMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFI  212 (451)
T ss_pred             CCCcEEEECCCcCccch-h------hhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHH
Confidence            23567777655433210 1      0111110             01112222100  001100       123343331


Q ss_pred             ----hcCCcEEEEcCC-CCCC-----CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC----cccEEEeccCc
Q 010008          240 ----LFRPKLIIAGAS-AYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHK  305 (520)
Q Consensus       240 ----~~~pklIi~~~s-~~p~-----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~----~aDiv~~S~hK  305 (520)
                          ..+.-+||+... ..++     ...+++|+++|+++|+++|+|+.+ .|+...+.. .++.    ..|++  |++|
T Consensus       213 ~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~-tg~gr~g~~-~a~~~~~v~pDi~--t~sK  288 (451)
T PRK06918        213 SEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQ-TGFARTGKY-FAIEHFDVVPDLI--TVSK  288 (451)
T ss_pred             hhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc-cCcCccCce-ehhHhcCCCCCEE--eeeh
Confidence                123456666521 1112     223889999999999999999984 455433321 1121    25755  5679


Q ss_pred             cc-CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC
Q 010008          306 SL-RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL  384 (520)
Q Consensus       306 ~l-~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~  384 (520)
                      .+ +|.|.|++++++      ++.+.+.........+++.....++++ +++.+.+.++.+   ++.+..+.+.+.|++.
T Consensus       289 ~l~~G~pig~v~~~~------~i~~~~~~~~~~~T~~g~~l~~aaa~a-~l~~i~~~~~~~---~~~~~g~~l~~~l~~l  358 (451)
T PRK06918        289 SLGAGVPISGVIGRK------EIMDESAPGELGGTYAGSPLGCAAALA-VLDIIEKENLND---RAIELGKVVMNRFEEM  358 (451)
T ss_pred             hhcCCCccEEEEEcH------HHHhccCCCCcCcCCCcCHHHHHHHHH-HHHHHHHCCHHH---HHHHHHHHHHHHHHHH
Confidence            98 578889999987      676666543333344554444444444 456554444433   3334445555655441


Q ss_pred             --CCEEec--CCCCCeeEEEEec-CC--CC-C---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCC
Q 010008          385 --GYKLVS--GGSDNHLVLVDLR-PM--GI-D---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFS  453 (520)
Q Consensus       385 --G~~v~~--~gt~~~~~~vd~~-~~--g~-~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~  453 (520)
                        ++.++.  .+. ..++.+.+. +.  .. +   ...+.+.|.+.||.+.    |+.  .+ .+.+|++.+..    ++
T Consensus       359 ~~~~~~~~~vrg~-G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~----~~~--~~-~~~lrl~p~l~----~t  426 (451)
T PRK06918        359 KNKYNCIGDVRGL-GAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLLL----SAG--TY-GNVIRVLMPLV----IT  426 (451)
T ss_pred             HhhCCCceeeccc-eeEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEEe----ecC--CC-CCEEEEECCCc----cC
Confidence              222211  122 223333331 10  11 1   2345566678999984    332  11 36799986632    45


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010008          454 EKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       454 ~~d~~~la~~i~~~l~~~  471 (520)
                      +++++++.+.|.++++..
T Consensus       427 ~~~id~~l~~l~~~l~~~  444 (451)
T PRK06918        427 DEQLEEGLTIIEESLQAC  444 (451)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            899999999999988643

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.25  E-value=6.7e-09  Score=110.10  Aligned_cols=320  Identities=13%  Similarity=0.055  Sum_probs=173.5

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC---
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---  180 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all---  180 (520)
                      .-.|.|.+|+...+.+. ...... . +. ++   ...+ ..+++.+++....+.   ....+||++|+.+++....   
T Consensus        60 h~~p~v~~ai~~q~~~~-~~~~~~-~-~~-~~---~~~~-lae~L~~~~p~~~~~---v~f~~sGseAve~AlklAr~~~  128 (429)
T PRK06173         60 YNHPRLNAAATNQLAKM-SHIMFG-G-FT-HE---PAVE-LAQKLLEILPPSLNK---IFFADSGSVAVEVAMKMALQYQ  128 (429)
T ss_pred             CCCHHHHHHHHHHHHhc-CCcccc-c-cC-CH---HHHH-HHHHHHhhCCCCcCE---EEEeCCchHHHHHHHHHHHHHH
Confidence            34688888887766532 110000 0 11 11   1122 235666666422221   2446899999998776432   


Q ss_pred             ----CCC-CEEEEcCCCCCccccccccccccccccccc-------------eEEEEEcccCCCC---CCCCHHHHHHHhh
Q 010008          181 ----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-------------YFESMPYRLDEST---GLVDYDMLEKTAI  239 (520)
Q Consensus       181 ----~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~-------------~~~~v~~~~d~~~---~~iD~d~le~~i~  239 (520)
                          ++| .+|+...-.|.|. +.+.      +++.+.             ....++++.....   ..-+++.+++.+.
T Consensus       129 ~~~g~~~r~~ii~~~~~yHG~-t~~a------~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~  201 (429)
T PRK06173        129 QAKGEVQRTKFATIRSGYHGD-TWHA------MSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLE  201 (429)
T ss_pred             HHhCCCCCcEEEEECCCcCCc-chhh------hccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHH
Confidence                133 5688777655332 1111      111110             0111222211000   0114566777775


Q ss_pred             hc--CCcEEEEcC--CCCCC-----CCCHHHHHHHHHHhCCEEEEechhhccccccccc--CCCCC-cccEEEeccCccc
Q 010008          240 LF--RPKLIIAGA--SAYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSL  307 (520)
Q Consensus       240 ~~--~pklIi~~~--s~~p~-----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~--~~p~~-~aDiv~~S~hK~l  307 (520)
                      .+  +..+||+..  -..++     ..-+++++++|+++|+++|+|++| .|+-..|..  ..-+. ..|+++  +.|.|
T Consensus       202 ~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~-tG~GrtG~~~a~~~~gv~PDiv~--~gK~l  278 (429)
T PRK06173        202 QKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIA-TGFGRTGKLFALEHAGVVPDIMC--IGKAL  278 (429)
T ss_pred             hCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchh-cCCCcCCcchHHHhcCCCCCEEE--eehhh
Confidence            32  455677764  22222     223789999999999999999998 675222211  01111 368887  56998


Q ss_pred             CCC--CceEEEeeCCCcchhhHHHhhccc-----CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 010008          308 RGP--RGGMIFFKKDPVLGVELESAINNA-----VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASR  380 (520)
Q Consensus       308 ~Gp--rgG~I~~~~~~~~~~~l~~~i~~~-----~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~  380 (520)
                      .|.  ..+.++.++      ++.+.+...     ....+.+++ ...+++...+|+.+.+.+   ..+++.++.+.|.+.
T Consensus       279 ~gG~~p~~a~~~~~------~i~~~~~~~~~~~~~~~~T~~g~-p~~~aaa~a~l~~i~~~~---~~~~~~~~g~~l~~~  348 (429)
T PRK06173        279 TGGYLTLSATITTE------AIAQTICSGEAKCFMHGPTFMAN-PLACAIAAESIRLLLESP---WQQNIQRIEAQLKQE  348 (429)
T ss_pred             hCCccccceEEecH------HHHHHHhcCCCCccccCCCCCcC-HHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHH
Confidence            542  356666666      555554321     111223343 333443334677665433   356777778888888


Q ss_pred             HHHC-CCEEecC--CCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHH
Q 010008          381 LVEL-GYKLVSG--GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEF  457 (520)
Q Consensus       381 L~~~-G~~v~~~--gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~  457 (520)
                      |++. +++.+..  + ...+.-+.+... .+...+.+.|.+.||.+...          ...||+.. .++   ++++|+
T Consensus       349 L~~~~~~~~v~~vRg-~Gl~~~iel~~~-~~~~~i~~~l~e~Gi~v~~~----------g~~l~~~P-pl~---it~~ei  412 (429)
T PRK06173        349 LAPAAEFDSVAEVRV-LGAIGVVEMKEP-VNMATLQPRFVEHGIWVRPF----------GKLVYIMP-PFI---ISPDEL  412 (429)
T ss_pred             HHHhhcCCCeeeeec-cceEEEEEeCCc-ccHHHHHHHHHHCCeEEEec----------CCEEEEeC-Ccc---CCHHHH
Confidence            8753 4443321  2 234444555432 23466788888999998421          14799964 455   679999


Q ss_pred             HHHHHHHHHHHHH
Q 010008          458 VAIADFIHEGVEI  470 (520)
Q Consensus       458 ~~la~~i~~~l~~  470 (520)
                      +++.+.+++++..
T Consensus       413 ~~~~~~l~~~l~~  425 (429)
T PRK06173        413 SQLTSGLLRVLKQ  425 (429)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999864

>PRK06105 aminotransferase; Provisional

Probab=99.25  E-value=1.1e-08  Score=109.55  Aligned_cols=323  Identities=14%  Similarity=0.097  Sum_probs=171.3

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC---
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---  180 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all---  180 (520)
                      .-+|.|.+|+.+.+.+. .......+|.  ++   ... ...+++.+++..+.+.   .....||++|+.+++....   
T Consensus        64 h~~p~i~~Ai~~q~~~~-~~~~~~~~~~--~~---~~~-~lae~L~~~~p~~~~~---v~f~~SGseAve~AlKlar~~~  133 (460)
T PRK06105         64 FSEQRLVEAAARQMKKL-PFYHTFSHKS--HG---PVI-DLAEKLVAMAPVPMSK---VFFTNSGSEANDTVVKLVWYYN  133 (460)
T ss_pred             CCCHHHHHHHHHHHHhC-CCeecccccC--CH---HHH-HHHHHHHHhCCCCCCE---EEEeCCcHHHHHHHHHHHHHHH
Confidence            45788999998887542 1111111111  11   112 2336677777543321   2345899999998887531   


Q ss_pred             ----CCC-CEEEEcCCCCCccccccccccccccccccc------------eEEEEEcccCCC---CC-------CCCHHH
Q 010008          181 ----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDES---TG-------LVDYDM  233 (520)
Q Consensus       181 ----~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~------------~~~~v~~~~d~~---~~-------~iD~d~  233 (520)
                          .+| .+|+...-.|.|.- .+      .+++.+.            .+..+++|....   .+       ...+++
T Consensus       134 ~~~g~t~r~~il~~~~~yHG~t-~~------a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  206 (460)
T PRK06105        134 NALGRPEKKKIISRQRGYHGVT-IA------SASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANE  206 (460)
T ss_pred             HhcCCCCCcEEEEecCccCCcc-hh------heeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHH
Confidence                133 57777765543321 11      1111111            011122211000   00       012356


Q ss_pred             HHHHhhh---cCCcEEEEcCC-CC-CCCCC----HHHHHHHHHHhCCEEEEechhh-cccccccccCCCCC-cccEEEec
Q 010008          234 LEKTAIL---FRPKLIIAGAS-AY-PRDFD----YPRMRQIADAVGALLMMDMAHI-SGLVAASVVADPFK-YCDVVTTT  302 (520)
Q Consensus       234 le~~i~~---~~pklIi~~~s-~~-p~~~d----~~~i~~ia~~~g~~li~D~Ah~-~gli~~~~~~~p~~-~aDiv~~S  302 (520)
                      +++++..   .++.+||+..- .. +...+    +++++++|+++|+++|+|++|. .|-........-+. -.|+++++
T Consensus       207 le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~~g  286 (460)
T PRK06105        207 LEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDILVMS  286 (460)
T ss_pred             HHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCeeeee
Confidence            7777642   24567777532 22 22333    8999999999999999999973 33321100000011 36888765


Q ss_pred             cCcccCCC--CceEEEeeCCCcchhhHHHhhccc-----C--CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010008          303 THKSLRGP--RGGMIFFKKDPVLGVELESAINNA-----V--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN  373 (520)
Q Consensus       303 ~hK~l~Gp--rgG~I~~~~~~~~~~~l~~~i~~~-----~--~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~n  373 (520)
                        |.|.|.  ..|.+++++      ++.+.+...     .  ..++.++......++++ .|+.+.++   +..+++.+.
T Consensus       287 --K~lggG~~P~~av~~~~------~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a-~L~~i~~~---~l~~~v~~~  354 (460)
T PRK06105        287 --KQLSSSYQPLSAVLMNE------KVYDPIADESGKIGTFGHGFTASGHPVAAAVALE-NLAIIEER---DLVGNAAER  354 (460)
T ss_pred             --cccccCcccceEEEEcH------HHHHHHhcccccCcccccCCCCCCCHHHHHHHHH-HHHHHHhc---cHHHHHHHH
Confidence              999653  467888877      565555321     1  12233443443444443 57766543   345677777


Q ss_pred             HHHHHHHHHHC-CCEEecC--CCCCeeEEEEecCCC-----CC-----HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEE
Q 010008          374 CRALASRLVEL-GYKLVSG--GSDNHLVLVDLRPMG-----ID-----GARVEKILDMASITLNKNSVPGDKSALVPGGI  440 (520)
Q Consensus       374 a~~l~~~L~~~-G~~v~~~--gt~~~~~~vd~~~~g-----~~-----~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~gi  440 (520)
                      .++|.+.|++. .+.++..  |. ..+.-+.+....     .+     ...+.+.|.+.||.+..    .      ...+
T Consensus       355 g~~l~~~L~~l~~~~~v~~vrG~-Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~----~------g~~i  423 (460)
T PRK06105        355 GARLQARLRALADHPLVGEVRGV-GLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVISRA----M------GDTL  423 (460)
T ss_pred             HHHHHHHHHHhhcCCCeEEEEec-ceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCCeEEEe----c------CCEE
Confidence            78888877663 2222221  11 122223432110     01     13466677789999842    1      2368


Q ss_pred             EEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          441 RIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       441 Rig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      |+..| ++   ++++|++++.+.+.++++.
T Consensus       424 ~l~Pp-l~---it~~eid~~~~~l~~~l~~  449 (460)
T PRK06105        424 AFCPP-LI---ITAAQVDEMVDRFGRALDD  449 (460)
T ss_pred             EEECC-Cc---cCHHHHHHHHHHHHHHHHH
Confidence            99755 43   5699999999999999875

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.24  E-value=1.1e-08  Score=109.16  Aligned_cols=320  Identities=17%  Similarity=0.144  Sum_probs=169.3

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC---
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---  180 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all---  180 (520)
                      .-.|.|.+++...+.+- ..+..   +...++   ...++ .+++.+++....+.   ....+||++|+.+++....   
T Consensus        65 h~~p~v~~ai~~ql~~l-~~~~~---~~~~~~---~~~~l-a~~L~~~~p~~~~~---v~f~~sGseAve~AlklAr~~~  133 (445)
T PRK09221         65 HGRPEIVEAVARQAATL-DYAPA---FQMGHP---LAFEL-AERLAELAPGGLDH---VFFTNSGSESVDTALKIALAYH  133 (445)
T ss_pred             CCCHHHHHHHHHHHHhc-cCccc---cccCCH---HHHHH-HHHHHHhCCCCCCE---EEEeCCcHHHHHHHHHHHHHHH
Confidence            35788888888777542 11111   111122   12223 35677776432222   2346899999998876421   


Q ss_pred             ---C-C-CCEEEEcCCCCCccccccccccccccccccc------------eEEEEEcccCCCC--CC--------CCHHH
Q 010008          181 ---K-P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDEST--GL--------VDYDM  233 (520)
Q Consensus       181 ---~-p-GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~------------~~~~v~~~~d~~~--~~--------iD~d~  233 (520)
                         . + ..+|+...-.|.|.- .+      .++..|.            .+..++++.+...  +.        -..++
T Consensus       134 ~~~g~~~r~~ii~~~~~yHG~t-~g------als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (445)
T PRK09221        134 RARGQGTRTRLIGRERGYHGVG-FG------GISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADD  206 (445)
T ss_pred             HhcCCCCCcEEEEECCCcCccc-hh------hhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHH
Confidence               1 2 257887776543321 11      0111110            0112222210000  00        01356


Q ss_pred             HHHHhhhc---CCcEEEEcC--CCCCCCCC----HHHHHHHHHHhCCEEEEechhhccccccccc--CCCCC-cccEEEe
Q 010008          234 LEKTAILF---RPKLIIAGA--SAYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTT  301 (520)
Q Consensus       234 le~~i~~~---~pklIi~~~--s~~p~~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~--~~p~~-~aDiv~~  301 (520)
                      +++.+...   +..+||+..  +..+...+    +++++++|+++|+++|+|++|. |+--.|..  ..-+. ..|++++
T Consensus       207 l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~t-G~GRtG~~~~~~~~gv~PDi~~~  285 (445)
T PRK09221        207 LERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVIT-GFGRLGAAFAAERFGVTPDIITF  285 (445)
T ss_pred             HHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhh-CCCcCchhhHHHhcCCCCCEEEe
Confidence            77777542   345666652  22222445    8999999999999999999974 43211110  00011 2588766


Q ss_pred             ccCcccCC--CCceEEEeeCCCcchhhHHHhhccc------C-CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010008          302 TTHKSLRG--PRGGMIFFKKDPVLGVELESAINNA------V-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVS  372 (520)
Q Consensus       302 S~hK~l~G--prgG~I~~~~~~~~~~~l~~~i~~~------~-~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~  372 (520)
                      +  |.+.|  ...|.+++++      ++.+.+...      . ...+.+++.....+++ .+|+.+.++   ...+++.+
T Consensus       286 g--K~l~gG~~Pi~av~~~~------~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~-a~L~~i~~~---~l~~~~~~  353 (445)
T PRK09221        286 A--KGLTNGAIPMGAVIASD------EIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGL-ATLDIYREE---DLFERAAE  353 (445)
T ss_pred             c--cccccCcccceeeEEcH------HHHHhhccCcccccccccccCCCcCHHHHHHHH-HHHHHHHhc---cHHHHHHH
Confidence            5  99854  3467777776      555544321      1 1223344444433444 467766543   34567777


Q ss_pred             HHHHHHHHHHHC-CCEEecC--CCCCeeEEEEecCC----CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccC
Q 010008          373 NCRALASRLVEL-GYKLVSG--GSDNHLVLVDLRPM----GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSP  445 (520)
Q Consensus       373 na~~l~~~L~~~-G~~v~~~--gt~~~~~~vd~~~~----g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~  445 (520)
                      ..++|.+.|++. ++..+..  |. .-+.-+.+...    ......+.+.|.+.||.+..          ....+|+..+
T Consensus       354 ~g~~l~~~l~~l~~~~~v~~vrg~-Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~----------~~~~lr~~Pp  422 (445)
T PRK09221        354 LAPYFEDAVHSLKGLPHVIDIRNI-GLVAGIELAPRPGAPGARGYEAFMKCFEKGLLVRY----------TGDTIALSPP  422 (445)
T ss_pred             HHHHHHHHHHhhccCCCEEEEecC-ceEEEEEEecccccccchHHHHHHHHHHCCeEEee----------cCCEEEEECC
Confidence            778888887763 3332221  11 12222333321    11134567778889999842          1247999755


Q ss_pred             CccccCCCHHHHHHHHHHHHHHHH
Q 010008          446 AMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       446 ~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                       ++   ++++|++++.+.+++++.
T Consensus       423 -l~---~t~~eid~~~~~l~~~l~  442 (445)
T PRK09221        423 -LI---IEKAQIDELVDALGDALR  442 (445)
T ss_pred             -cc---CCHHHHHHHHHHHHHHHH
Confidence             43   569999999999999885

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.24  E-value=1.8e-08  Score=107.34  Aligned_cols=200  Identities=20%  Similarity=0.198  Sum_probs=116.5

Q ss_pred             CCcEEEEcC--CCCCCCCC----HHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEeccCcccC-CCC
Q 010008          242 RPKLIIAGA--SAYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPR  311 (520)
Q Consensus       242 ~pklIi~~~--s~~p~~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S~hK~l~-Gpr  311 (520)
                      +..+||+..  ++.+...+    +++++++|+++|+++|+|++|. |+...|...  ..+. ..|++++  .|.+. |.+
T Consensus       221 ~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~t-G~gr~G~~~a~~~~gv~pDivt~--~K~l~~G~p  297 (441)
T PRK05769        221 EVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQT-GMGRTGKMFAIEHFGVEPDIITL--AKAIAGGLP  297 (441)
T ss_pred             ceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcccceehhhccCCCCCEEEE--cccccCCcc
Confidence            456666652  22223455    9999999999999999999976 543223110  0111 2588865  59884 556


Q ss_pred             ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCC--CEEe
Q 010008          312 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG--YKLV  389 (520)
Q Consensus       312 gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G--~~v~  389 (520)
                      .|++++++      ++.+.+... ...+.++......+++ .+|+.+.+    +..+++.+..++|.+.|++..  +.++
T Consensus       298 ~gav~~~~------~i~~~~~~~-~~~T~~g~p~~~aaa~-a~L~~l~~----~~~~~~~~~g~~l~~~L~~l~~~~~~~  365 (441)
T PRK05769        298 LGAVIGRA------ELMFLPPGS-HANTFGGNPVAAAAAL-ATLEELEE----GLLENAQKLGEYLRKELKELKEKYEFI  365 (441)
T ss_pred             cEEEEEeh------hhhhcCCCC-CCCCCCcCHHHHHHHH-HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            78888887      454333222 2223344333333343 35666542    445667777788888886632  3332


Q ss_pred             cC--CCCCeeEEEEecCCC--CC---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHH
Q 010008          390 SG--GSDNHLVLVDLRPMG--ID---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIAD  462 (520)
Q Consensus       390 ~~--gt~~~~~~vd~~~~g--~~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~  462 (520)
                      ..  |. ..+.-+.+....  -+   ...+.+.|.+.||.+..         .....+|+..+. +   ++++|++++.+
T Consensus       366 ~~vrg~-G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil~~~---------~~~~~lr~~p~l-~---~t~~~id~~~~  431 (441)
T PRK05769        366 GDVRGL-GLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLG---------AGKSAIRIIPPL-I---ITEEEADIGLE  431 (441)
T ss_pred             eeeecc-eEEEEEEeccCCccccHHHHHHHHHHHHhCCcEEec---------CCCCEEEEeCCC-C---CCHHHHHHHHH
Confidence            21  11 123333442210  01   23456667789999832         123579997653 2   56999999999


Q ss_pred             HHHHHHHH
Q 010008          463 FIHEGVEI  470 (520)
Q Consensus       463 ~i~~~l~~  470 (520)
                      .+++++..
T Consensus       432 ~l~~~l~~  439 (441)
T PRK05769        432 ILEEAIKE  439 (441)
T ss_pred             HHHHHHHH
Confidence            99998863

>PRK06541 hypothetical protein; Provisional

Probab=99.23  E-value=1.3e-08  Score=108.84  Aligned_cols=215  Identities=17%  Similarity=0.168  Sum_probs=121.9

Q ss_pred             HHHHHHhhhc---CCcEEEEcC-CCCCC-CCC----HHHHHHHHHHhCCEEEEechh-hcccccccccCCCCC-cccEEE
Q 010008          232 DMLEKTAILF---RPKLIIAGA-SAYPR-DFD----YPRMRQIADAVGALLMMDMAH-ISGLVAASVVADPFK-YCDVVT  300 (520)
Q Consensus       232 d~le~~i~~~---~pklIi~~~-s~~p~-~~d----~~~i~~ia~~~g~~li~D~Ah-~~gli~~~~~~~p~~-~aDiv~  300 (520)
                      +.+++.+...   +..+||+.. .+..+ ..+    +++|+++|+++|+++|+|++| ..|-........-+. ..|+++
T Consensus       208 ~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt  287 (460)
T PRK06541        208 DRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIIT  287 (460)
T ss_pred             HHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEE
Confidence            6677777532   334555543 12222 344    899999999999999999997 333221110000011 358876


Q ss_pred             eccCcccC-CC-CceEEEeeCCCcchhhHHHhhccc--CC--CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010008          301 TTTHKSLR-GP-RGGMIFFKKDPVLGVELESAINNA--VF--PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNC  374 (520)
Q Consensus       301 ~S~hK~l~-Gp-rgG~I~~~~~~~~~~~l~~~i~~~--~~--p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na  374 (520)
                        +.|.+. |+ +.|.+++++      ++.+.+...  .+  .+..+++.....+++ ..++.+..+   ...+++.++.
T Consensus       288 --~gK~l~~G~~pigav~~~~------~i~~~~~~~~~~~~~~~T~~gnp~~~aaal-a~l~~l~~~---~~~~~~~~~g  355 (460)
T PRK06541        288 --CAKGITSGYSPLGAMIASD------RLFEPFLDGPTMFLHGYTFGGHPVSAAVAL-ANLDIFERE---GLLDHVRDNE  355 (460)
T ss_pred             --ecccccCCccceeEEEEcH------HHHHHhhcCCCccccCCCCCCCHHHHHHHH-HHHHHHHhc---cHHHHHHHHH
Confidence              569986 43 567777776      555554322  11  123333333333333 346655433   3457777888


Q ss_pred             HHHHHHHHHC-CCEEec--CCCCCeeEEEEecCC-----CCCH--------HHHHHHHhhcCeEEcCCCCCCCCCCCCCC
Q 010008          375 RALASRLVEL-GYKLVS--GGSDNHLVLVDLRPM-----GIDG--------ARVEKILDMASITLNKNSVPGDKSALVPG  438 (520)
Q Consensus       375 ~~l~~~L~~~-G~~v~~--~gt~~~~~~vd~~~~-----g~~~--------~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~  438 (520)
                      ++|.+.|.+. .+.++.  .| ...+.-+.+...     ..+.        ..+.+.|.+.||.+...  |     .+..
T Consensus       356 ~~l~~~L~~l~~~~~v~~vrg-~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--~-----~g~~  427 (460)
T PRK06541        356 PAFRATLEKLLDLPIVGDVRG-DGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRAD--D-----RGDP  427 (460)
T ss_pred             HHHHHHHHHhhcCCCeEEEEe-cceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEec--C-----CCCC
Confidence            8888888763 233221  11 223334444211     0000        23556777899998531  1     1235


Q ss_pred             EEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          439 GIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       439 giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      .||++.+ ++   ++++|++++.+.+++++..
T Consensus       428 ~lrl~Pp-l~---~t~~~id~~~~~l~~~l~~  455 (460)
T PRK06541        428 VVQLAPP-LI---SGQEEFDEIEQILRSVLTE  455 (460)
T ss_pred             EEEEECC-CC---CCHHHHHHHHHHHHHHHHH
Confidence            7999766 33   5699999999999999864

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.23  E-value=5.4e-09  Score=110.85  Aligned_cols=320  Identities=13%  Similarity=0.075  Sum_probs=175.0

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC---
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---  180 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all---  180 (520)
                      .-+|.|.+++...+.. +...... .++ ..   ..++  ..+++.++++-..+.   ....+||++|+..++....   
T Consensus        61 h~~p~v~~ai~~~~~~-~~~~~~~-~~~-~~---~~~~--la~~l~~~~~~~~~~---v~f~~sGseA~e~AlklAr~~~  129 (427)
T TIGR00508        61 YNHPRLNAAAQKQIDK-MSHVMFG-GFT-HK---PAIE--LCQKLVKMTPNALDC---VFLADSGSVAVEVALKMALQYW  129 (427)
T ss_pred             CCCHHHHHHHHHHHHh-cCCcccc-ccC-CH---HHHH--HHHHHHhhCCCCCCE---EEEeCCcHHHHHHHHHHHHHHH
Confidence            4568888888777643 2211111 111 11   1222  235666776533222   2446799999998876432   


Q ss_pred             ----CCC-CEEEEcCCCCCccccccccccccccccccc-----------e--EEEEEcccCCCC---CCCCHHHHHHHhh
Q 010008          181 ----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-----------Y--FESMPYRLDEST---GLVDYDMLEKTAI  239 (520)
Q Consensus       181 ----~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~-----------~--~~~v~~~~d~~~---~~iD~d~le~~i~  239 (520)
                          .+| .+|+..+-.|.|+.. +      ...+.+.           .  ...++++...-.   ..-|++++++.+.
T Consensus       130 ~~~~~~~r~~il~~~~~yHG~t~-~------~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~  202 (427)
T TIGR00508       130 QAKGEKNRQKFLTIRSGYHGDTF-G------AMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLME  202 (427)
T ss_pred             HhhCCCCccEEEEEcCCcCCccH-h------hhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHH
Confidence                133 678888766544311 0      0111110           0  011111111000   0125677777776


Q ss_pred             hc--CCcEEEEcC--CCCCC-----CCCHHHHHHHHHHhCCEEEEechhhccccccccc--CCCCC-cccEEEeccCccc
Q 010008          240 LF--RPKLIIAGA--SAYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSL  307 (520)
Q Consensus       240 ~~--~pklIi~~~--s~~p~-----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~--~~p~~-~aDiv~~S~hK~l  307 (520)
                      ..  +..+||+..  ...++     ..++++|+++|+++|+++|+|++| .|+...|..  ..-+. ..|+++  +.|.|
T Consensus       203 ~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~-tG~Gr~G~~~~~~~~~v~pDi~~--~gK~l  279 (427)
T TIGR00508       203 LHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIA-TGFGRTGKLFACEHAGVVPDILC--VGKAL  279 (427)
T ss_pred             hcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cCCCcCCccchhhhcCCCCCEEE--echhh
Confidence            42  345666653  33332     346889999999999999999998 565332211  10111 368887  57998


Q ss_pred             CCC--CceEEEeeCCCcchhhHHHhhcccC-----CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 010008          308 RGP--RGGMIFFKKDPVLGVELESAINNAV-----FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASR  380 (520)
Q Consensus       308 ~Gp--rgG~I~~~~~~~~~~~l~~~i~~~~-----~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~  380 (520)
                      .|.  ..+.+++++      ++.+.++...     +....+++ ...+++...+|+.+.+.+   ..+++.++.++|.+.
T Consensus       280 ~gG~~p~~a~~~~~------~~~~~~~~~~~~~~~~~~T~~g~-p~~~aaa~a~l~~l~~~~---~~~~~~~~~~~l~~~  349 (427)
T TIGR00508       280 TGGYMTLSATVTTD------KVAQTISSGEAGCFMHGPTFMGN-PLACAVAEASLAILLEGE---WQKQVSAIENQLKRE  349 (427)
T ss_pred             hcCcccceEEEEcH------HHHHHHhcCCCCccccCCCCCcC-HHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHH
Confidence            442  346667766      5666554321     11222333 333333334677654433   357777788888888


Q ss_pred             HHHCCC-EEecCCC-CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHH
Q 010008          381 LVELGY-KLVSGGS-DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFV  458 (520)
Q Consensus       381 L~~~G~-~v~~~gt-~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~  458 (520)
                      |++.+. ..+...+ ...+..+.+... .+...+.+.|.+.||.+...          ...+|+..+..    ++++|++
T Consensus       350 L~~l~~~~~i~~vrg~G~~~~i~~~~~-~~~~~~~~~l~~~Gv~~~~~----------~~~l~~~ppl~----~t~~~id  414 (427)
T TIGR00508       350 LSPLRKNPVVKDVRVLGAIGVVEMYKP-VNVEELQKKFVEQGVWIRPF----------GKLIYVMPPYI----ITTEQLQ  414 (427)
T ss_pred             HHHhhcCCCEEeEeccccEEEEEECCc-cCHHHHHHHHHHCCeEEEec----------CCEEEEECCCC----CCHHHHH
Confidence            877432 1121100 123444555322 23567788888999998421          13689976643    5689999


Q ss_pred             HHHHHHHHHHH
Q 010008          459 AIADFIHEGVE  469 (520)
Q Consensus       459 ~la~~i~~~l~  469 (520)
                      ++.+.+++++.
T Consensus       415 ~~~~~l~~~l~  425 (427)
T TIGR00508       415 KLTAALIEALH  425 (427)
T ss_pred             HHHHHHHHHHh
Confidence            99999999875

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=99.23  E-value=2.3e-09  Score=111.47  Aligned_cols=278  Identities=18%  Similarity=0.160  Sum_probs=139.7

Q ss_pred             HHHHHHHHcCCCCCCCceeeecCChH----HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEE
Q 010008          144 CQKRALAAFNLDENKWGVNVQPLSGS----PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMP  219 (520)
Q Consensus       144 a~~~~~~lfg~~~~~~~~~V~~~sGs----~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~  219 (520)
                      -+..++++.|.+.    +|.....|+    +|..+++..--+..++|+++.-.|+.+.. ...     -...+..++++.
T Consensus       115 ~Qs~i~eLTGmdv----aNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~-v~~-----t~a~~~g~~iv~  184 (429)
T PF02347_consen  115 YQSMICELTGMDV----ANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRA-VLR-----TYAAPLGIEIVE  184 (429)
T ss_dssp             HHHHHHHHHTSSE----E-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHH-HHH-----HHCCHCCEEEEE
T ss_pred             HHHHHHHhhCCCc----cCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHH-HHH-----HhhhhCCeEEEE
Confidence            3478999999985    344444443    34333333333445799999876654432 000     112334467888


Q ss_pred             cccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC-CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-ccc
Q 010008          220 YRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCD  297 (520)
Q Consensus       220 ~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~-~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aD  297 (520)
                      ++.+ +.+..|        .+ ++..|++.+||+-+ ..|+++|.+++|++|+++++ .+   ...+.+....|-+ |+|
T Consensus       185 ~~~~-~~~~~d--------~~-~~a~v~vq~Pn~~G~~ed~~~i~~~~h~~gal~~~-~a---d~~aL~~l~~Pge~GAD  250 (429)
T PF02347_consen  185 VPLD-EDGTTD--------DD-DTAAVMVQNPNTFGVFEDIKEIADIAHAAGALVIV-GA---DPNALGGLKSPGEYGAD  250 (429)
T ss_dssp             E-BB-TTCSB---------ST-TEEEEEEESS-TTSB--THHHHHHHHHHTT-EEEE-CG---GCCGCCTC--GGGGT-S
T ss_pred             eccc-ccCCcc--------cc-CeEEEEeecCCCCceEeeHHHHHHHHHHcCCEEEE-ec---CHHHHhCcCChhhcCcc
Confidence            7776 345556        33 78889999998766 66899999999999999987 54   3344444455655 899


Q ss_pred             EEEeccCccc------CCCCceEEEeeCCCc----------------------chhhHHHhhcccCCCCCCCCChHHHHH
Q 010008          298 VVTTTTHKSL------RGPRGGMIFFKKDPV----------------------LGVELESAINNAVFPGLQGGPHNHTIG  349 (520)
Q Consensus       298 iv~~S~hK~l------~GprgG~I~~~~~~~----------------------~~~~l~~~i~~~~~p~~~g~p~~~~ia  349 (520)
                      |+++. ||+|      +||..|++.+++...                      .+..-.+.|++-.-....++  +..+.
T Consensus       251 I~vg~-~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIct--nqaL~  327 (429)
T PF02347_consen  251 IVVGE-HQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICT--NQALL  327 (429)
T ss_dssp             EEEEC-CTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---S--S-HHH
T ss_pred             EEeeC-CCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhh--hHHHH
Confidence            99766 8876      566669999988410                      00011112221110111122  11222


Q ss_pred             HHHH--HHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCC
Q 010008          350 GLAV--CLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKN  426 (520)
Q Consensus       350 ala~--al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~  426 (520)
                      |+.+  -+..+...++++..+++..++.++++.|.+. ++.+ .+..-... +++.. ......++.+.+...|+...  
T Consensus       328 A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~-~~~~f~e~-v~~~~-~~~~~~~l~~~~~~~gl~~~--  402 (429)
T PF02347_consen  328 ALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKIYGLPF-DNPFFFEF-VVVFS-KDKEVEELLKRGIEGGLNLR--  402 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBECS-SSSSBSSE-EEEES-S-HHHHHHHHTT----EEEG--
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-CCCCceee-eeecC-CcHHHHHHHHHHHhcCCCcc--
Confidence            2221  2334445678999999999999999999885 2222 22111112 22222 11111123333334553332  


Q ss_pred             CCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHH
Q 010008          427 SVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  464 (520)
Q Consensus       427 ~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i  464 (520)
                       .|      ..+.+-++....++    ++|++.+++++
T Consensus       403 -~~------~~~~~li~~TE~~t----~edid~lv~~f  429 (429)
T PF02347_consen  403 -YP------DDGALLICVTETRT----KEDIDRLVEAF  429 (429)
T ss_dssp             -GG-------SSEEEEE--TT------HHHHHHHHH--
T ss_pred             -cc------CCCeEEEEccCCCC----HHHHHHHHhcC
Confidence             22      23467777666554    89999998764

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=99.21  E-value=4.3e-09  Score=105.00  Aligned_cols=306  Identities=16%  Similarity=0.177  Sum_probs=179.5

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhh-CCC
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAI-LKP  182 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~al-l~p  182 (520)
                      .|..+++.....|..-  .|..|  -|.....+.-+++.+.+.+.++=| .+.+|. +|..|+|+ .|+..++.-+ ..+
T Consensus        87 fp~Dai~RA~~~L~~~--gGs~G--aYS~SqGv~~vR~~VA~~I~rRDG-~p~~p~-dI~LT~GAS~ai~~il~l~~~~~  160 (475)
T KOG0258|consen   87 FPTDAIKRAKRILNDC--GGSLG--AYSDSQGVPGVRKHVAEFIERRDG-IPADPE-DIFLTTGASPAIRSILSLLIAGK  160 (475)
T ss_pred             CCHHHHHHHHHHHHhc--CCccc--ccccccCChhHHHHHHHHHHhccC-CCCCHH-HeeecCCCcHHHHHHHHHHhcCC
Confidence            4555555555555432  23333  244444455666666678888888 544553 67778887 7888777766 458


Q ss_pred             CCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCC-CCCCHHHHHHHhhh----cCCcEEEEcCCCCCC--
Q 010008          183 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAIL----FRPKLIIAGASAYPR--  255 (520)
Q Consensus       183 GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~-~~iD~d~le~~i~~----~~pklIi~~~s~~p~--  255 (520)
                      .|-||++-|.|.        .+...++..|.  ..++|-+|+++ |.+|.++|++.+.+    .+|+++++-.|.||+  
T Consensus       161 ~~GvliPiPQYP--------LYsAti~l~~~--~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGq  230 (475)
T KOG0258|consen  161 KTGVLIPIPQYP--------LYSATISLLGG--TQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQ  230 (475)
T ss_pred             CCceEeecCCCc--------hhHHHHHHhCC--cccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccch
Confidence            899999988653        22234445554  56777788664 78999999876654    478888777888887  


Q ss_pred             ---CCCHHHHHHHHHHhCCEEEEechhhcccccccc--cCC------CC--Cccc----EEEeccCccc---CCCCceEE
Q 010008          256 ---DFDYPRMRQIADAVGALLMMDMAHISGLVAASV--VAD------PF--KYCD----VVTTTTHKSL---RGPRGGMI  315 (520)
Q Consensus       256 ---~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~--~~~------p~--~~aD----iv~~S~hK~l---~GprgG~I  315 (520)
                         .-.+++|..+|.+.|++|+.|+. |-.-++.+.  +.+      .+  ++.|    +...|+||.+   +|.|||+.
T Consensus       231 vls~e~ie~i~~fa~~~~l~llaDEV-YQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYm  309 (475)
T KOG0258|consen  231 VLSEENIEGIICFAAEEGLVLLADEV-YQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYM  309 (475)
T ss_pred             hhcHHHHHHHHHHHHHcCeEEechHH-HHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCee
Confidence               34789999999999999999987 333333321  110      00  1332    3345777876   78999986


Q ss_pred             Ee-eCCCcchhhHHHhh--------------cccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 010008          316 FF-KKDPVLGVELESAI--------------NNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASR  380 (520)
Q Consensus       316 ~~-~~~~~~~~~l~~~i--------------~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~  380 (520)
                      =. +-.......+.+.+              +..+.|..-|.++.+...+           +-+........+++.+.+.
T Consensus       310 Ev~n~~prv~~qi~Kl~si~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~-----------Ekd~il~~l~~ra~l~~~~  378 (475)
T KOG0258|consen  310 ESLNRDPRVKQQIKKLASIKLCPQVSGQKLVDLVVNPPKPGDPSYDLFSS-----------EKDGILSSLRSRAKLTEDA  378 (475)
T ss_pred             ecccCChhHHHHHHHHHhhhhcCCccchhhhceecCCCCCCCcchhhhhh-----------hhHhHHHHHHHHhHHHHHH
Confidence            33 22110000111111              1122233334444433321           1123445566678888888


Q ss_pred             HHH-CCCEEecCCCCCeeEE--EEecC--------CCCCHHH--HHHHHhhcCeEEcCCCCCCCCCCC--CCCEEEEc
Q 010008          381 LVE-LGYKLVSGGSDNHLVL--VDLRP--------MGIDGAR--VEKILDMASITLNKNSVPGDKSAL--VPGGIRIG  443 (520)
Q Consensus       381 L~~-~G~~v~~~gt~~~~~~--vd~~~--------~g~~~~~--~~~~L~~~gI~v~~~~~Pg~~~~~--~~~giRig  443 (520)
                      +++ .|+.+.... ...+.+  +++..        .++..+.  +.++|++.||.+    +||.....  ++-++|..
T Consensus       379 ~ns~~gi~cn~~q-GAMY~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcv----VPGSGFGQ~~GtyH~R~T  451 (475)
T KOG0258|consen  379 FNSLEGISCNPVQ-GAMYLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICV----VPGSGFGQKEGTYHFRTT  451 (475)
T ss_pred             HhhcCceeeccCc-cceeecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEE----ecCCCCCCCCceeEEEEe
Confidence            888 587775431 122222  23322        1333333  568899999999    78765222  23457764

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.19  E-value=5e-08  Score=104.47  Aligned_cols=314  Identities=16%  Similarity=0.114  Sum_probs=162.4

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh--CCC
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP  182 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al--l~p  182 (520)
                      -.|.|.+++...+......+.       .++  .++|  ..+++.+.+.. .+.  + ...+||++|+.+++...  ...
T Consensus       116 ~~p~v~~av~~ql~~~~~~~~-------~~~--~~~~--lAe~l~~~~p~-~~~--v-~f~~SGsEA~e~AlklAR~~tg  180 (474)
T PLN02482        116 ADDEVLAALAETMKKGTSFGA-------PCL--LENV--LAEMVIDAVPS-VEM--V-RFVNSGTEACMGVLRLARAYTG  180 (474)
T ss_pred             CCHHHHHHHHHHHhhCCCCCC-------CCH--HHHH--HHHHHHHhCCC-CCE--E-EEeCChHHHHHHHHHHHHHhcC
Confidence            469999999888764321111       111  2222  33567776642 222  2 33589999999887643  222


Q ss_pred             CCEEEEcCCCCCccc-ccccccccc--c---cccccceE----EEEEcccCCCCCCCCHHHHHHHhhhc--CCcEEEEcC
Q 010008          183 HDRIMGLDLPHGGHL-SHGFMTPKR--R---VSGTSIYF----ESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGA  250 (520)
Q Consensus       183 GD~Vl~~~~~~~ghl-s~g~~~~~~--~---v~~~g~~~----~~v~~~~d~~~~~iD~d~le~~i~~~--~pklIi~~~  250 (520)
                      .++|+...-.|.|+. +.+......  .   ....|...    ..+.++      .-|++++++.+..+  +..+||+..
T Consensus       181 r~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~nd~~~l~~~l~~~~~~iAavI~Ep  254 (474)
T PLN02482        181 REKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAP------YNDLEAVKKLFEANKGEIAAVILEP  254 (474)
T ss_pred             CCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEec------CCChHHHHHHHHhCCCceEEEEECC
Confidence            367887765443321 000000000  0   00000000    011111      12788999888653  345666652


Q ss_pred             C-CCCC-CCC----HHHHHHHHHHhCCEEEEechhhccccccccc--CCCCC-cccEEEeccCcccCC-CCceEEEeeCC
Q 010008          251 S-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKD  320 (520)
Q Consensus       251 s-~~p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~--~~p~~-~aDiv~~S~hK~l~G-prgG~I~~~~~  320 (520)
                      . .+.+ ..+    +++++++|+++|+++|+|++| .|+ -.+..  ..-+. ..|++++  .|.+.| ...|.+.+++ 
T Consensus       255 v~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~-tGf-R~g~~ga~~~~gv~PDi~t~--gK~lggG~Pigav~g~~-  329 (474)
T PLN02482        255 VVGNSGFIVPKKEFLEGLREITKENGALLVFDEVM-TGF-RIAYGGAQEYFGITPDLTTL--GKVIGGGLPVGAYGGRR-  329 (474)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc-cCe-ecCcchHhHHhCCCCCEEEe--cchhhCCCceEEEEEcH-
Confidence            1 2222 222    678999999999999999998 565 22210  00011 3688655  599954 3346667777 


Q ss_pred             CcchhhHHHhhccc--CC-CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH----CCCEEecCCC
Q 010008          321 PVLGVELESAINNA--VF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGYKLVSGGS  393 (520)
Q Consensus       321 ~~~~~~l~~~i~~~--~~-p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~----~G~~v~~~gt  393 (520)
                           ++.+.+...  .+ .++.++... .+++...+|+.+.+++   ..+++.++.++|.+.|.+    .|++++..+-
T Consensus       330 -----ei~~~~~~~~~~~~~~T~~gnpl-~~aAala~L~~l~~~~---~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v  400 (474)
T PLN02482        330 -----EIMEMVAPAGPMYQAGTLSGNPL-AMTAGIHTLKRLQQPG---TYEYLDKITKKLIQGILEAGKKAGHEMCGGYI  400 (474)
T ss_pred             -----HHHHhhccCCCcccccCcchhHH-HHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHhcCCCEEEccc
Confidence                 666665421  11 122223222 3333333577665433   456666677777777765    3455442111


Q ss_pred             CCeeEEEEecCCC---------CCH---HHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHH
Q 010008          394 DNHLVLVDLRPMG---------IDG---ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA  461 (520)
Q Consensus       394 ~~~~~~vd~~~~g---------~~~---~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la  461 (520)
                       ..++-+.+....         -+.   ..+.+.|.+.||.+.....|        .    +++.   .-++++|++++.
T Consensus       401 -~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~~~--------~----~~ps---l~ht~~dId~~l  464 (474)
T PLN02482        401 -SGMFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQFE--------A----GFTS---LAHTEEDIDFTI  464 (474)
T ss_pred             -ceEEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccCCC--------C----CcCC---CCCCHHHHHHHH
Confidence             112222221100         011   24566677899998532110        0    1122   236799999999


Q ss_pred             HHHHHHHH
Q 010008          462 DFIHEGVE  469 (520)
Q Consensus       462 ~~i~~~l~  469 (520)
                      +.+++++.
T Consensus       465 ~al~~~l~  472 (474)
T PLN02482        465 AAAERVLA  472 (474)
T ss_pred             HHHHHHHH
Confidence            99998875

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.19  E-value=1.4e-08  Score=102.15  Aligned_cols=342  Identities=18%  Similarity=0.161  Sum_probs=165.3

Q ss_pred             hccceEecCCCCChHHHHHHHhhhhh---cc-C-CCCCCCCCCC-CcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecC
Q 010008           93 FKSLELIASENFTSRAVMEAVGSCLT---NK-Y-SEGLPGKRYY-GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPL  166 (520)
Q Consensus        93 ~~~i~Liasen~~~~~V~ea~~s~l~---~~-y-~~G~p~~ryy-~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~  166 (520)
                      ...++|.-+-.-++++-++--...|.   .. + +.| ...|-| |+...+.++    ++.+++++|+++++    |.+.
T Consensus        22 a~~L~LdmtRGKPs~eQLdLS~~lL~~~~~~~~~~dG-~D~RNY~G~l~Gipe~----r~l~a~llgv~~~~----viv~   92 (425)
T PF12897_consen   22 AKGLKLDMTRGKPSPEQLDLSNPLLDLPGSSDYLADG-TDCRNYPGGLDGIPEA----RELFAELLGVPPEN----VIVG   92 (425)
T ss_dssp             HTT--EES---S--HHHHHGGGGGGGSSTTCCBECTT-EBTTSS-S-SS--HHH----HHHHHHHHTS-GGG----EEE-
T ss_pred             HcCCCcccCCCCCCHHHHhhhHHHhcCCCCccccCCC-ccccCCCCccCChHHH----HHHHHHHhCCCHHH----EEEe
Confidence            36788887777777776665333333   11 1 222 234667 777666654    47789999999874    3333


Q ss_pred             ChH--HHHHHH-HHhh----CC--------CCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCH
Q 010008          167 SGS--PANFEV-YTAI----LK--------PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY  231 (520)
Q Consensus       167 sGs--~A~~~~-l~al----l~--------pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~  231 (520)
                      ..|  .-++-+ ..++    ..        +.=+.|++.|.|--|++        .....|.  +.+++|.++  ..+|+
T Consensus        93 gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFa--------i~E~~Gi--emi~VpM~~--dGPDm  160 (425)
T PF12897_consen   93 GNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFA--------ITEHFGI--EMIPVPMTE--DGPDM  160 (425)
T ss_dssp             SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHH--------HHHHCT---EEEEEEEET--TEE-H
T ss_pred             ccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHH--------HHHhhCc--EEEecCCCC--CCCCH
Confidence            333  333222 2232    11        12357888887766653        2233454  777777763  46999


Q ss_pred             HHHHHHhhh-cCCcEEEEc-CCCCCC--CCCHHHHHHHH----HHhCCEEEEechhhccccccccc-C---CCCC-----
Q 010008          232 DMLEKTAIL-FRPKLIIAG-ASAYPR--DFDYPRMRQIA----DAVGALLMMDMAHISGLVAASVV-A---DPFK-----  294 (520)
Q Consensus       232 d~le~~i~~-~~pklIi~~-~s~~p~--~~d~~~i~~ia----~~~g~~li~D~Ah~~gli~~~~~-~---~p~~-----  294 (520)
                      |.+|+++.+ -..|.|+|. .-+||+  ...-+.++++|    ...+..++.|.|++......+.. .   +.+.     
T Consensus       161 D~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~A  240 (425)
T PF12897_consen  161 DMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKA  240 (425)
T ss_dssp             HHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHHT
T ss_pred             HHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccccccchhhhHHHHHHHHc
Confidence            999999854 245888886 234555  44555555565    35699999999977665533211 1   1111     


Q ss_pred             -ccc--EEEeccCc-ccCCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHH
Q 010008          295 -YCD--VVTTTTHK-SLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV  370 (520)
Q Consensus       295 -~aD--iv~~S~hK-~l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i  370 (520)
                       +.|  ++..||+| ||+|-..+++..++.      -.+.+.+.......|.--++++.-.. =|+... .+.++.+++.
T Consensus       241 Gnpdrv~~F~STSKITf~GaGva~~aaS~~------Nl~~~~~~~~~~tIgpdKvNQLRHvr-ff~d~~-gGv~aHM~kH  312 (425)
T PF12897_consen  241 GNPDRVYVFASTSKITFPGAGVAFFAASEA------NLAWIKKHLSVQTIGPDKVNQLRHVR-FFKDAE-GGVRAHMRKH  312 (425)
T ss_dssp             T-TTSEEEEEESTTTS-TTSS-EEEEE-HH------HHHHHHHHHHHH-S---HHHHHHHHH-HHHSHH-THHHHHHHHH
T ss_pred             CCCCeEEEEecccccccCCcceeeeecCHH------HHHHHHHHhcCceeCccHHHHHHHHH-HhcChh-hHHHHHHHHH
Confidence             234  67789999 678877788888873      33333222111112322333332110 111110 0222222221


Q ss_pred             --------HHHHHHHHHHHH-HCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCC--CCCCCCCCCCCCE
Q 010008          371 --------VSNCRALASRLV-ELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKN--SVPGDKSALVPGG  439 (520)
Q Consensus       371 --------~~na~~l~~~L~-~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~--~~Pg~~~~~~~~g  439 (520)
                              ..-.+.|.++|. ..|+--.+.....+++.+|+.+ | +...+.+++.++||.+...  ++|....| ..+.
T Consensus       313 a~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~-G-~AkrvV~lakeAGV~LT~AGAtfPyg~DP-~D~n  389 (425)
T PF12897_consen  313 AAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLD-G-TAKRVVELAKEAGVALTPAGATFPYGKDP-RDSN  389 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEEST-T--HHHHHHHHHHTTEE---TTTTSGGG--T-TS-E
T ss_pred             HHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCC-C-hHHHHHHHHHHhCceeCCCCCCCCCCCCC-CCCc
Confidence                    122334455555 4455444433445777888753 3 5788999999999998642  24432212 3578


Q ss_pred             EEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          440 IRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       440 iRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      |||.. .+.+    .+|++...+.+.-+++.+
T Consensus       390 IRiAP-S~P~----leel~~Am~~~~~cv~la  416 (425)
T PF12897_consen  390 IRIAP-SYPS----LEELETAMDVFATCVKLA  416 (425)
T ss_dssp             EEE---SSS-----HHHHHHHHHHHHHHHHHH
T ss_pred             EEecC-CCCC----HHHHHHHHHHHHHHHHHH
Confidence            99963 3433    689999999988887765

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>PRK06062 hypothetical protein; Provisional

Probab=99.18  E-value=5.9e-08  Score=103.65  Aligned_cols=320  Identities=13%  Similarity=0.064  Sum_probs=163.6

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-CCC
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKP  182 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al-l~p  182 (520)
                      .-.|.|.+|+...+.. .....+  .| . .+   ...+ ..+++.+++.-..+.   ....+|||+|+.+++... .-.
T Consensus        69 h~~p~v~~Ai~~q~~~-~~~~~~--~~-~-~~---~~~~-lae~L~~~~p~~~~~---v~f~~SGsEAve~AlklAr~~t  136 (451)
T PRK06062         69 HQHPKVVAAIQEQAAR-LCTVAP--AH-A-ND---ARSE-AARLIAERAPGDLSK---VFFTNGGADANEHAVRMARLHT  136 (451)
T ss_pred             CCCHHHHHHHHHHHHh-cCCcCC--cc-C-CH---HHHH-HHHHHHHhCCCCCCE---EEEcCChHHHHHHHHHHHHHhh
Confidence            3468888888877653 211111  11 1 12   1122 235666766432222   244689999999887643 223


Q ss_pred             -CCEEEEcCCCCCccccccccccccccccccc-----------eEEEEEcccCC-CCC--CCC-------HHHHHHHhhh
Q 010008          183 -HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-----------YFESMPYRLDE-STG--LVD-------YDMLEKTAIL  240 (520)
Q Consensus       183 -GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~-----------~~~~v~~~~d~-~~~--~iD-------~d~le~~i~~  240 (520)
                       ..+|+...-.|.|.- .+      .++..+.           .+..++++... ..+  .-|       ++.+++++..
T Consensus       137 gr~~ii~~~~~yHG~t-~~------als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~  209 (451)
T PRK06062        137 GRPKVLSAYRSYHGGT-GS------AINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIEL  209 (451)
T ss_pred             CCceEEEEeCCCCCCC-HH------HHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHh
Confidence             367887765443321 01      0111110           00111111100 000  012       5777877753


Q ss_pred             c---CCcEEEEcCC-CCCC-CCC----HHHHHHHHHHhCCEEEEechhhccccccccc--CCCCC-cccEEEeccCcccC
Q 010008          241 F---RPKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSLR  308 (520)
Q Consensus       241 ~---~pklIi~~~s-~~p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~--~~p~~-~aDiv~~S~hK~l~  308 (520)
                      .   +..+||+..- ...+ ..+    +++++++|+++|+++|+|++|. |+--.|..  ..-+. ..|+++++  |.|.
T Consensus       210 ~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~t-GfGRtG~~~a~~~~gv~PDi~t~g--K~lg  286 (451)
T PRK06062        210 EGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMA-GFGRTGKWFAIEHFGVVPDLITFA--KGVN  286 (451)
T ss_pred             cCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeecccc-CCCcCcHHHHHHhcCCCCCeeeec--hhhh
Confidence            2   3456776521 2222 444    8999999999999999999975 43111110  00011 36888664  9997


Q ss_pred             CC--CceEEEeeCCCcchhhHHHhhcccC--CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHH-HHHHHHHHH
Q 010008          309 GP--RGGMIFFKKDPVLGVELESAINNAV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNC-RALASRLVE  383 (520)
Q Consensus       309 Gp--rgG~I~~~~~~~~~~~l~~~i~~~~--~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na-~~l~~~L~~  383 (520)
                      |.  ..|.+++++      ++.+.+....  ...+.++... .+++..++|+.+.++++   .+++.+.. +.|.+.|++
T Consensus       287 gG~~Pigav~~~~------~i~~~~~~~~~~~~~T~~gnpl-~~Aaa~a~L~~l~~~~l---~~~~~~~G~~~l~~~L~~  356 (451)
T PRK06062        287 SGYVPLGGVAISE------AIAATFADRPYPGGLTYSGHPL-ACAAAVATINAMEEEGI---VENAARIGAEVLGPGLRE  356 (451)
T ss_pred             cCCcCcEEEEEcH------HHHHHhccCCCCCCCCCCCCHH-HHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHH
Confidence            52  355666666      5665554322  1223444333 33333336776654433   34444443 355555554


Q ss_pred             C--CCEEec--CCCCCeeEEEEecCC-----CCC--------HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCC
Q 010008          384 L--GYKLVS--GGSDNHLVLVDLRPM-----GID--------GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPA  446 (520)
Q Consensus       384 ~--G~~v~~--~gt~~~~~~vd~~~~-----g~~--------~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~  446 (520)
                      .  .++++.  .|. ..+.-+.+...     ..+        ...+.+.|.+.||.+..   +       ...+|+..|.
T Consensus       357 l~~~~~~v~~vrG~-Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~---~-------~~~lrl~ppl  425 (451)
T PRK06062        357 LAERHPSVGEVRGL-GVFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFV---N-------GNRIHVVPPC  425 (451)
T ss_pred             HHhcCCcEEeEecc-ccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEEee---c-------CCEEEEECCc
Confidence            1  222221  111 12233333210     001        23566778889998732   1       2468997653


Q ss_pred             ccccCCCHHHHHHHHHHHHHHHHH
Q 010008          447 MTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       447 ~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      .    ++++|++++.+.++++++.
T Consensus       426 ~----~t~~eid~~~~~l~~~l~~  445 (451)
T PRK06062        426 T----VTEDEVREGLAILDAALAV  445 (451)
T ss_pred             c----CCHHHHHHHHHHHHHHHHH
Confidence            3    5699999999999998864

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.15  E-value=1.6e-07  Score=100.14  Aligned_cols=204  Identities=14%  Similarity=0.130  Sum_probs=116.5

Q ss_pred             CCcEEEEc-CCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEeccCccc-CCCC
Q 010008          242 RPKLIIAG-ASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSL-RGPR  311 (520)
Q Consensus       242 ~pklIi~~-~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S~hK~l-~Gpr  311 (520)
                      +..+||+. ..++++  ..   -+++++++|+++|+++|+|+.+ .|+-..+...  .-+. -.|++++  .|.+ .|.+
T Consensus       206 ~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~-tGfGRtG~~~a~~~~gv~PDiv~~--gK~l~~G~P  282 (442)
T TIGR00709       206 KPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQ-AGFGRSGTMFAFEHAGIEPDFVVM--SKAVGGGLP  282 (442)
T ss_pred             ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc-cCCCCCCchhHHHHcCCCCcEEEE--cccccCCcc
Confidence            44566665 333433  12   3889999999999999999985 3543223110  0011 3688885  5998 4566


Q ss_pred             ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCEEe
Q 010008          312 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLV  389 (520)
Q Consensus       312 gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~v~  389 (520)
                      .|++++++      ++ +.+.......+.++......+|+ ++|+.+.+++   ..+++.++.++|.+.|++.  .+.++
T Consensus       283 igav~~~~------~~-~~~~~~~~~~T~~gnpla~aaa~-a~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~v  351 (442)
T TIGR00709       283 LAVLLIAP------EF-DAWQPAGHTGTFRGNQLAMVTGT-EALNYWKDDN---LAQNAQERGERITSFLDDMIKEHPCI  351 (442)
T ss_pred             cEEEEEch------HH-hccCCCcCCCCCCcCHHHHHHHH-HHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            78888877      43 33322222233444344444444 3566655444   3456666677777777652  23332


Q ss_pred             cCCC-CCeeEEEEecCCC----------CC---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHH
Q 010008          390 SGGS-DNHLVLVDLRPMG----------ID---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK  455 (520)
Q Consensus       390 ~~gt-~~~~~~vd~~~~g----------~~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~  455 (520)
                      ..-+ ..-+.-+.+....          .+   ...+...|.+.||.+...   +    .....||+..| ++   ++++
T Consensus       352 ~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~---~----~~~~~l~~~Pp-l~---it~~  420 (442)
T TIGR00709       352 GNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETG---G----REGEVFRLLCP-IT---IDQE  420 (442)
T ss_pred             eeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeec---C----CCCCEEEEECC-CC---CCHH
Confidence            2101 1223334442110          01   234566677899998431   1    12357899654 44   6799


Q ss_pred             HHHHHHHHHHHHHHH
Q 010008          456 EFVAIADFIHEGVEI  470 (520)
Q Consensus       456 d~~~la~~i~~~l~~  470 (520)
                      |++++.+.+++++..
T Consensus       421 ei~~~~~~l~~~l~~  435 (442)
T TIGR00709       421 ECEEGISRFKQAVEE  435 (442)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999864

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK07678 aminotransferase; Validated

Probab=99.14  E-value=9.2e-08  Score=102.20  Aligned_cols=326  Identities=18%  Similarity=0.145  Sum_probs=166.5

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh---C
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI---L  180 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al---l  180 (520)
                      .-.|.|.+|+...+..-.   +.... + .++.  .+|  ..+++.++++... .   ....+||++|+.+++...   .
T Consensus        63 h~~p~v~~ai~~q~~~~~---~~~~~-~-~~~~--~~~--lae~l~~~~~~~~-~---v~f~~sGseA~e~AlklAr~~t  129 (451)
T PRK07678         63 YGRKELAEAAYEQLKTLS---YFPLT-Q-SHEP--AIK--LAEKLNEWLGGEY-V---IFFSNSGSEANETAFKIARQYH  129 (451)
T ss_pred             CCCHHHHHHHHHHHHhcC---ccccc-c-CCHH--HHH--HHHHHHHhCCCCC-E---EEEeCCcHHHHHHHHHHHHHHH
Confidence            346888888877765321   11101 1 1221  222  3356777775432 1   234589999999877643   1


Q ss_pred             ----CCC-CEEEEcCCCCCccccccccccccccccccc------------eEEEEEcccCCC-CC-----CCCH---HHH
Q 010008          181 ----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDES-TG-----LVDY---DML  234 (520)
Q Consensus       181 ----~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~------------~~~~v~~~~d~~-~~-----~iD~---d~l  234 (520)
                          +|| .+|+...-.|.|.- .+      .++..+.            .+..++++.... .+     ..|.   +.+
T Consensus       130 ~~~g~~~r~~ii~~~~~yHG~t-~~------als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  202 (451)
T PRK07678        130 AQKGEPHRYKFISRYRAYHGNS-MG------ALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEI  202 (451)
T ss_pred             HhcCCCCCcEEEEECCCcCCcc-HH------HhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHH
Confidence                133 57887775543321 01      0111110            011122110000 00     0112   235


Q ss_pred             HHHhhh---cCCcEEEEcCC-CCCC-CC----CHHHHHHHHHHhCCEEEEechhh-ccccccc-ccCCCCC-cccEEEec
Q 010008          235 EKTAIL---FRPKLIIAGAS-AYPR-DF----DYPRMRQIADAVGALLMMDMAHI-SGLVAAS-VVADPFK-YCDVVTTT  302 (520)
Q Consensus       235 e~~i~~---~~pklIi~~~s-~~p~-~~----d~~~i~~ia~~~g~~li~D~Ah~-~gli~~~-~~~~p~~-~aDiv~~S  302 (520)
                      ++.+..   .+.-+||+..- ...+ ..    -+++++++|+++|+++|+|+.+. .|-...- -... +. ..|+++++
T Consensus       203 ~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~-~gv~PDivt~g  281 (451)
T PRK07678        203 DRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMN-YGVKPDIITMA  281 (451)
T ss_pred             HHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHh-cCCCCCEEEee
Confidence            555642   24556777532 1222 22    28899999999999999999863 3322100 0010 11 36999775


Q ss_pred             cCcccCCC--CceEEEeeCCCcchhhHHHhhccc------CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010008          303 THKSLRGP--RGGMIFFKKDPVLGVELESAINNA------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNC  374 (520)
Q Consensus       303 ~hK~l~Gp--rgG~I~~~~~~~~~~~l~~~i~~~------~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na  374 (520)
                        |.|.|.  ..|.+++++      ++.+.+...      ...++.+++.....++++ +|+.+.+++   ..+++.+..
T Consensus       282 --K~lggG~~Pi~av~~~~------~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a-~l~~l~~~~---~~~~~~~~g  349 (451)
T PRK07678        282 --KGITSAYLPLSATAVKK------EIYEAFKGKGEYEHFRHVNTFGGNPAACALALK-NLEIMENEN---LIERSAQLG  349 (451)
T ss_pred             --cccccCCcceeEEEEcH------HHHHHHhccCcccccccCCCCCcCHHHHHHHHH-HHHHHHhCC---HHHHHHHHH
Confidence              999652  467777877      566555421      112234443443344443 577665433   345566666


Q ss_pred             HHHHHHHHH--CCCEEec--CCCCCeeEEEEecCCC-----CC---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEE
Q 010008          375 RALASRLVE--LGYKLVS--GGSDNHLVLVDLRPMG-----ID---GARVEKILDMASITLNKNSVPGDKSALVPGGIRI  442 (520)
Q Consensus       375 ~~l~~~L~~--~G~~v~~--~gt~~~~~~vd~~~~g-----~~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRi  442 (520)
                      ++|.+.|++  ....++.  .|. ..+.-+.+....     .+   ...+...|.+.||.+...   +...+.....||+
T Consensus       350 ~~l~~~l~~~~~~~~~v~~vrg~-Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~---g~~v~~~~~~lrl  425 (451)
T PRK07678        350 ELLLEQLKEELGEHPLVGDIRGK-GLLVGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKN---GDTVAGYNNVLTL  425 (451)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEee-ceEEEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeec---CccccCCCCEEEE
Confidence            777777754  1222221  111 223334442110     01   234667778899998532   1000112357999


Q ss_pred             ccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          443 GSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       443 g~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +.+..    ++++|++++++.+.+++..
T Consensus       426 ~Ppl~----it~~eid~~~~~l~~~l~~  449 (451)
T PRK07678        426 SPPLV----ISSEEIAFIVGTLKTALER  449 (451)
T ss_pred             ECCCc----CCHHHHHHHHHHHHHHHHh
Confidence            86643    4689999999999998863

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.12  E-value=1.4e-07  Score=100.28  Aligned_cols=306  Identities=14%  Similarity=0.121  Sum_probs=161.7

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh--CCC
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP  182 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al--l~p  182 (520)
                      -.|.|.+|+...+......++       .++.  .+  ...+++.+++. ..+.   ....+|||+|+.+++...  ...
T Consensus        70 ~~p~v~~ai~~q~~~~~~~~~-------~~~~--~~--~la~~l~~~~p-~~~~---v~f~~sGseA~e~AlklAr~~tg  134 (428)
T PRK12389         70 AHPHITKAITEAAENGVLYGT-------PTEL--EI--EFAKMLKEAIP-SLEK---VRFVNSGTEAVMTTIRVARAYTG  134 (428)
T ss_pred             CCHHHHHHHHHHHHhCCccCC-------CCHH--HH--HHHHHHHHhCC-CCcE---EEEeCCHHHHHHHHHHHHHHhhC
Confidence            468888888877754211111       1121  22  23356666664 1222   234689999999887643  222


Q ss_pred             CCEEEEcCCCCCccccccccccccccccccce-----------E------EEEEcccCCCCCCCCHHHHHHHhhhc--CC
Q 010008          183 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----------F------ESMPYRLDESTGLVDYDMLEKTAILF--RP  243 (520)
Q Consensus       183 GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~-----------~------~~v~~~~d~~~~~iD~d~le~~i~~~--~p  243 (520)
                      ..+|+...-.|.|.-. +      .++..+..           +      ....++      ..|++.+++.+..+  +.
T Consensus       135 r~~ii~~~~~yHG~t~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~~~~~v  201 (428)
T PRK12389        135 RTKIIKFAGCYHGHSD-L------VLVAAGSGPSTLGTPDSAGVPKSIAQEVITVP------FNDIEALKEALDKWGDEV  201 (428)
T ss_pred             CCEEEEECCCcCCChH-H------HHHhcCCcccccCCCCCCCCCCcccCceEEcC------CCCHHHHHHHHHhcCCcE
Confidence            3678877655433210 0      01111100           0      011111      23788998888643  34


Q ss_pred             cEEEEcC-CCC-CCCCC----HHHHHHHHHHhCCEEEEechhhccccccccc--CCCCC-cccEEEeccCcccCC-CCce
Q 010008          244 KLIIAGA-SAY-PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSLRG-PRGG  313 (520)
Q Consensus       244 klIi~~~-s~~-p~~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~--~~p~~-~aDiv~~S~hK~l~G-prgG  313 (520)
                      .+||+.. ... +...+    +++|+++|+++|+++|+|++|. |+ -.+..  ..-+. ..|++++  .|.+.| ...|
T Consensus       202 aavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~t-G~-Rt~~~~a~~~~gv~PDivt~--gK~lggG~Pi~  277 (428)
T PRK12389        202 AAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVIT-AF-RFMYGGAQDLLGVEPDLTAL--GKIIGGGLPIG  277 (428)
T ss_pred             EEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccc-cc-ccCcchhhHHhCCCCCeeee--chhhcCCCcee
Confidence            5666652 122 22344    8999999999999999999975 33 11100  00011 3688755  599854 3346


Q ss_pred             EEEeeCCCcchhhHHHhhcc--cCC-CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH----CCC
Q 010008          314 MIFFKKDPVLGVELESAINN--AVF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGY  386 (520)
Q Consensus       314 ~I~~~~~~~~~~~l~~~i~~--~~~-p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~----~G~  386 (520)
                      .+++++      ++.+.+..  ..+ .++.++......+++ +.|+.+.+++   ..+++.+..++|.+.|++    .++
T Consensus       278 av~~~~------~i~~~~~~~~~~~~~~T~~gnpl~~Aaal-a~L~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~  347 (428)
T PRK12389        278 AYGGRK------DIMEQVAPLGPAYQAGTMAGNPASMAAGI-ACLEVLQQEG---VYEKLDRLGAMLEEGILEAAEKHGI  347 (428)
T ss_pred             EEeEHH------HHHhhhccCCCcccccCCccCHHHHHHHH-HHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            667777      66666542  111 223344333333333 3577665433   456666777777777765    343


Q ss_pred             EE-ecCCCCCeeEEEEecCCCC---------C---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCC
Q 010008          387 KL-VSGGSDNHLVLVDLRPMGI---------D---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFS  453 (520)
Q Consensus       387 ~v-~~~gt~~~~~~vd~~~~g~---------~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~  453 (520)
                      .. +..+. . ++-+.+.....         +   ...+.+.|.+.||.+...   +      ...+.+   .+   -++
T Consensus       348 ~~~v~r~~-g-~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~---~------~~~~~~---~l---~~t  410 (428)
T PRK12389        348 TITINRLK-G-ALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPS---K------YEAWFL---TT---AHT  410 (428)
T ss_pred             CEEEEecC-c-EEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecC---C------CCCeee---cC---CCC
Confidence            22 11221 1 22233321111         1   234667777899998532   1      111222   22   267


Q ss_pred             HHHHHHHHHHHHHHHH
Q 010008          454 EKEFVAIADFIHEGVE  469 (520)
Q Consensus       454 ~~d~~~la~~i~~~l~  469 (520)
                      ++|++++.+.++++++
T Consensus       411 ~e~id~~~~~l~~~l~  426 (428)
T PRK12389        411 EEDIEETLEAVDRAFA  426 (428)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998875

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.11  E-value=1.7e-07  Score=100.26  Aligned_cols=322  Identities=17%  Similarity=0.145  Sum_probs=168.4

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh--CC
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK  181 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al--l~  181 (520)
                      .-.|.|.+|+...+.. +..+  ..+|.  ++...+    ..++++++++-..+.   ....+||++|+.+++.-.  ..
T Consensus        87 h~~p~v~~Ai~~ql~~-~~~~--~~~~~--~~~~~~----lae~L~~~~p~~~~~---v~f~~sGseAve~AlklAr~~t  154 (459)
T PRK06082         87 YGHPHVIEKVKEQMAK-LPFS--PRRFT--NETAIE----CAEKLTEIAGGELNR---VLFAPGGTSAIGMALKLARHIT  154 (459)
T ss_pred             CCCHHHHHHHHHHHHh-CCCc--cCccC--CHHHHH----HHHHHHHhCCCCCCE---EEECCCcHHHHHHHHHHHHHhc
Confidence            3578899998887753 3221  11221  222222    336777777533222   245688999999877633  22


Q ss_pred             CCCEEEEcCCCCCccccccccccccccccccc------------eEEEEEcccCCC-CC-CCC------HHHHHHHhhhc
Q 010008          182 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDES-TG-LVD------YDMLEKTAILF  241 (520)
Q Consensus       182 pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~------------~~~~v~~~~d~~-~~-~iD------~d~le~~i~~~  241 (520)
                      ...+|+...-.|.|.- .+      .+.+.+.            .+..++.+.... .+ ..|      ++.+++.+...
T Consensus       155 gr~~ii~~~~~yHG~t-~~------a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  227 (459)
T PRK06082        155 GNFKVVSLWDSFHGAS-LD------AISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKE  227 (459)
T ss_pred             CCCEEEEEeCCCcCcc-HH------HHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcC
Confidence            2367887765443321 11      0111110            011122111000 00 011      35577776531


Q ss_pred             -CCcEEEEcCCC-CCC-CCC---HHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEeccCcccCCC--
Q 010008          242 -RPKLIIAGASA-YPR-DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRGP--  310 (520)
Q Consensus       242 -~pklIi~~~s~-~p~-~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S~hK~l~Gp--  310 (520)
                       +..+||+.... .+. ..+   +++++++|+++|+++|+|++|. |+--.|.. . .-+. ..|++++  .|.++|.  
T Consensus       228 ~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~t-G~GRtG~~fa~e~~gv~PDiv~~--gKgl~gG~~  304 (459)
T PRK06082        228 GGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPN-GMGRTGEWFTHQAYGIEPDILCI--GKGLGGGLV  304 (459)
T ss_pred             CCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCccchhhHhHhhCCCCCEEEe--cccccCCCC
Confidence             34566665221 112 233   8999999999999999999975 43212210 0 0011 3688874  5999652  


Q ss_pred             CceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCEE
Q 010008          311 RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKL  388 (520)
Q Consensus       311 rgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~v  388 (520)
                      ..|.+++++      ++..........++.+++.....++++ .|+.+.+++   ..+++.++.++|.+.|++.  .+.+
T Consensus       305 P~~av~~~~------~i~~~~~~~~~~~T~~gnpl~~aaa~a-~L~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~  374 (459)
T PRK06082        305 PIAAMITKD------KYNTAAQISLGHYTHEKSPLGCAAALA-TIEVIEQEG---LLEKVKADSQFMRERLLEMKAKYPL  374 (459)
T ss_pred             cceEEEEcH------HHHhhccCCCCCCCCCcCHHHHHHHHH-HHHHHHhcC---HHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            457777776      444333221111234443443333333 566654433   4566667777777777652  2322


Q ss_pred             ecC--CCCCeeEEEEecCC----CCC---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHH
Q 010008          389 VSG--GSDNHLVLVDLRPM----GID---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVA  459 (520)
Q Consensus       389 ~~~--gt~~~~~~vd~~~~----g~~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~  459 (520)
                      +..  |. .-+.-+.+...    ..+   ...+...+.+.||.+...         ....||+..| ++   ++++|+++
T Consensus       375 i~~vrG~-Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~---------~~~~i~~~Pp-l~---it~~eid~  440 (459)
T PRK06082        375 IGDVRGI-GLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVS---------QGNVIQLSPP-LI---ITREELTQ  440 (459)
T ss_pred             eeeeeec-cceeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEec---------CCCEEEEeCC-Cc---cCHHHHHH
Confidence            221  21 22333444211    011   234556667899988421         1357999755 43   56999999


Q ss_pred             HHHHHHHHHHHH
Q 010008          460 IADFIHEGVEIT  471 (520)
Q Consensus       460 la~~i~~~l~~~  471 (520)
                      +.+.+++++...
T Consensus       441 ~~~~l~~~l~~~  452 (459)
T PRK06082        441 ALAILEEAIAKI  452 (459)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998653

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=99.11  E-value=8.2e-09  Score=99.77  Aligned_cols=225  Identities=23%  Similarity=0.298  Sum_probs=142.0

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCC-CCC------ccccccccccccccc
Q 010008          137 IDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDL-PHG------GHLSHGFMTPKRRVS  209 (520)
Q Consensus       137 ~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~-~~~------ghls~g~~~~~~~v~  209 (520)
                      .|.||    .-+++.||++..-  |.+|..||+.|+..++.++++|||+.|...- +|.      |.-..+.    ..+.
T Consensus        67 RdtLe----~vyA~vf~aE~a~--VRpq~isGTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~----gSL~  136 (416)
T COG4100          67 RDTLE----RVYAQVFGAEAAL--VRPQIISGTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQ----GSLK  136 (416)
T ss_pred             hhHHH----HHHHHHhccccce--eeeeeecchhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCc----ccHH
Confidence            45666    5678999999753  6788899999999999999999999986531 110      0000000    0111


Q ss_pred             cccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCC-CCC---C--CCCHHHHHHHHHHh--CCEEEEechhhc
Q 010008          210 GTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS-AYP---R--DFDYPRMRQIADAV--GALLMMDMAHIS  281 (520)
Q Consensus       210 ~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s-~~p---~--~~d~~~i~~ia~~~--g~~li~D~Ah~~  281 (520)
                      -.|..|+.++  +. .++.+|++.+.+.+++ ++|+|.+--| .|.   .  ..+++++.++.++.  ++++.+|.++ -
T Consensus       137 dfgi~Y~~v~--Lt-~~gkiD~~~v~~~i~~-~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCY-G  211 (416)
T COG4100         137 DFGIKYKAVP--LT-ADGKIDIQAVKTAISD-RTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCY-G  211 (416)
T ss_pred             HhCcceeecc--cc-cCCcccHHHHHHhcCc-cceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccc-h
Confidence            2233344433  43 3689999999999998 9999987532 333   2  34677777777775  7999999983 3


Q ss_pred             ccccccccCCCCC-cccEEEeccCcccCCC---CceEEEeeCCCcchhhHHHhhc-ccCCCCCCCCChHHHHHHHHHHHH
Q 010008          282 GLVAASVVADPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAIN-NAVFPGLQGGPHNHTIGGLAVCLK  356 (520)
Q Consensus       282 gli~~~~~~~p~~-~aDiv~~S~hK~l~Gp---rgG~I~~~~~~~~~~~l~~~i~-~~~~p~~~g~p~~~~iaala~al~  356 (520)
                      .++-   ...|.. ++|++.+|+-|.-.|.   -||+|.+++      ++.+.-. +...||+ |...-..+.    ++.
T Consensus       212 EFvE---~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~------~~ve~~~yRlTaPGI-G~e~Gat~~----~l~  277 (416)
T COG4100         212 EFVE---EKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKA------ELVEAAAYRLTAPGI-GREGGATLY----SLR  277 (416)
T ss_pred             hhhh---ccCccccchhhhccceeeCCCCceeeccceeechH------HHHHhhceeeecCCc-cccccccHH----HHH
Confidence            3331   124444 8999999999986542   468999988      5655432 3344554 211111111    233


Q ss_pred             HhcCchh--HHHHHHHHHHHHHHHHHHHHCCCEEec
Q 010008          357 HAQSPEF--KVYQNKVVSNCRALASRLVELGYKLVS  390 (520)
Q Consensus       357 ~~~~~~~--~~~~~~i~~na~~l~~~L~~~G~~v~~  390 (520)
                      ++-+.-|  .....+..+-+...+..|.+.|+++.+
T Consensus       278 ~myqGlFlAPhvv~qa~Kga~fta~~le~lg~~~~P  313 (416)
T COG4100         278 EMYQGLFLAPHVVSQAVKGAHFTARFLEKLGFPVNP  313 (416)
T ss_pred             HHHhhhccchHHHHHHhhhhHHHHHHHHHcCCCCCC
Confidence            3322112  345666666677777778888998754

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.10  E-value=8.3e-08  Score=101.63  Aligned_cols=209  Identities=13%  Similarity=0.053  Sum_probs=123.8

Q ss_pred             HHHHHHhhhcCCcEEEEcCC--CCC-----CCCCHHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEe
Q 010008          232 DMLEKTAILFRPKLIIAGAS--AYP-----RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTT  301 (520)
Q Consensus       232 d~le~~i~~~~pklIi~~~s--~~p-----~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~  301 (520)
                      +.+++++.. +.-+||+..-  ..+     ....+++++++|+++|+++|+|++| .|+--.|.. . .-.. ..|++++
T Consensus       191 ~~~~~~~~~-~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~-tG~GrtG~~~a~~~~gv~PDi~t~  268 (422)
T PRK05630        191 RSLELLIDE-TVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIA-TGFGRTGELFATLAAGVTPDIMCV  268 (422)
T ss_pred             HHHHHHHhh-ceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecce-eCCCcCchhhHHHhcCCCCCeeee
Confidence            344555544 6777777641  222     2335889999999999999999997 554222210 0 0011 3588855


Q ss_pred             ccCcccCC--CCceEEEeeCCCcchhhHHHhhccc------CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010008          302 TTHKSLRG--PRGGMIFFKKDPVLGVELESAINNA------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN  373 (520)
Q Consensus       302 S~hK~l~G--prgG~I~~~~~~~~~~~l~~~i~~~------~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~n  373 (520)
                        .|.+.|  +.+|++++++      ++.+.+...      ....+.++ +...+++...+|+.+.+.++   .+++.++
T Consensus       269 --gK~l~gG~~p~~av~~~~------~i~~~~~~~~~~~~~~h~~T~~g-~Pla~aaa~aaL~~l~~~~~---~~~~~~~  336 (422)
T PRK05630        269 --GKALTGGFMSFAATLCTD------KVAQLISTPNGGGALMHGPTFMA-NPLACAVAHASLEIIETGMW---RKQVKRI  336 (422)
T ss_pred             --echhhcCccccceeeccH------HHHHHHhccCCCCccccCCCCcC-CHHHHHHHHHHHHHHHhCcH---HHHHHHH
Confidence              599955  5788888887      565554321      11122333 33344444446777654333   4566666


Q ss_pred             HHHHHHHHHHC-CCEEecC--CCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCcccc
Q 010008          374 CRALASRLVEL-GYKLVSG--GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTR  450 (520)
Q Consensus       374 a~~l~~~L~~~-G~~v~~~--gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~  450 (520)
                      .++|.+.|++. ....+..  | ...+.-+.+... .+...+.+.|.+.||.+...          ...+|+. |.++  
T Consensus       337 g~~l~~~L~~l~~~~~v~~vRg-~Gl~~~ie~~~~-~~~~~~~~~~~~~Gl~~~~~----------g~~l~~~-PpL~--  401 (422)
T PRK05630        337 EAELIAGLSPLAHLPGVADVRV-LGAIGVVEMEQP-VDMEEATQAAVDHGVWLRPF----------GRLVYVM-PPYI--  401 (422)
T ss_pred             HHHHHHHHHHhhcCCCeeeeec-cccEEEEEECCc-ccHHHHHHHHHHCCeEEEec----------CCEEEEE-CCcc--
Confidence            77777766642 1222221  1 123444555321 23456777888999998421          1468995 4455  


Q ss_pred             CCCHHHHHHHHHHHHHHHHH
Q 010008          451 GFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       451 g~~~~d~~~la~~i~~~l~~  470 (520)
                       ++++|++++.+.+++++..
T Consensus       402 -it~~~i~~~~~~l~~al~~  420 (422)
T PRK05630        402 -TTSEQIAQICAALAAAVKA  420 (422)
T ss_pred             -CCHHHHHHHHHHHHHHHhc
Confidence             5799999999999999864

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.09  E-value=8.6e-08  Score=101.89  Aligned_cols=309  Identities=16%  Similarity=0.130  Sum_probs=159.8

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-CCCC
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPH  183 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al-l~pG  183 (520)
                      -.|.|.+|+...+.....       +..  +...++|  ..+++.+++... +.   ....+||++|+.+++... .-.|
T Consensus        65 ~~p~v~~Ai~~q~~~~~~-------~~~--~~~~~~~--la~~l~~~~p~~-~~---v~f~~sGseA~e~AlklAr~~tg  129 (431)
T PRK06209         65 AYPPVVEAVREALQDGCN-------FTR--PSAIELD--AAESFLELIDGA-DM---VKFCKNGSDATSAAVRLARAYTG  129 (431)
T ss_pred             CCHHHHHHHHHHHHhCcC-------CCC--CCHHHHH--HHHHHHHhCCcc-ce---EEEecCHHHHHHHHHHHHHHHhC
Confidence            468888888877764321       111  1111222  335677776321 11   244689999999888743 2234


Q ss_pred             -CEEEEcC--CCCCcc-ccccccccccccccccce----EEEEEcccCCCCCCCCHHHHHHHhhhc--CCcEEEEcC--C
Q 010008          184 -DRIMGLD--LPHGGH-LSHGFMTPKRRVSGTSIY----FESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGA--S  251 (520)
Q Consensus       184 -D~Vl~~~--~~~~gh-ls~g~~~~~~~v~~~g~~----~~~v~~~~d~~~~~iD~d~le~~i~~~--~pklIi~~~--s  251 (520)
                       .+|+...  .-|+.+ ..||..    .. ..+..    ..+..++      .-|++++++++...  +..+||+..  +
T Consensus       130 r~~i~~~~~~~~h~~~~~~~g~~----~~-~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~~~~~~aavi~Epv~g  198 (431)
T PRK06209        130 RDLVARCADHPFFSTDDWFIGTT----PM-SAGIPASVSALTVTFR------YNDIASLEALFEDHPGRIACVILEPATA  198 (431)
T ss_pred             CCeEEEeccCccccccccccccC----CC-CCCCChhHhccccccC------CCCHHHHHHHHHhCCCCEEEEEEccccC
Confidence             3555441  111101 012210    00 00100    0111111      23789999888642  345666642  1


Q ss_pred             CCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccc-cCCCCC-cccEEEeccCcccCC-CCceEEEeeCCCcchhhHH
Q 010008          252 AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASV-VADPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKDPVLGVELE  328 (520)
Q Consensus       252 ~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~~p~~-~aDiv~~S~hK~l~G-prgG~I~~~~~~~~~~~l~  328 (520)
                      ..|....+++|+++|+++|+++|+|++| .|+...+. ...-+. ..|++++  .|.++| ..+|.+++++      ++.
T Consensus       199 ~~~~~~~l~~l~~lc~~~g~lLI~DEv~-tG~~~~~~g~~~~~gv~PDi~t~--gK~lggG~p~~av~~~~------~i~  269 (431)
T PRK06209        199 DEPQDGFLHEVRRLCHENGALFILDEMI-TGFRWHMRGAQKLYGIVPDLSCF--GKALGNGFAVSALAGKR------EYM  269 (431)
T ss_pred             CCCCHHHHHHHHHHHHHcCCEEEEEccc-ccCCcCcchhhHHhCCCcceeee--hhhhcCCcccEEEEEHH------HHH
Confidence            2223345899999999999999999998 66532110 000011 2577555  599964 4568888877      555


Q ss_pred             Hh--hc----ccCC-CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH----CCCEEe-c-CCCCC
Q 010008          329 SA--IN----NAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGYKLV-S-GGSDN  395 (520)
Q Consensus       329 ~~--i~----~~~~-p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~----~G~~v~-~-~gt~~  395 (520)
                      +.  +.    ...| .+..-+++...+++..++|+.+.+++   ..+++.++.++|.+.|++    .++... . .|...
T Consensus       270 ~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~---~~~~~~~~g~~l~~~L~~~~~~~~~~~~vr~~G~~~  346 (431)
T PRK06209        270 ELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDED---VIERLHEQGAKLAAGVNEAAAEHGLQDHVRVSGRPC  346 (431)
T ss_pred             hhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecceE
Confidence            54  21    1111 11122234444555555677776543   355666666777776654    344321 1 12211


Q ss_pred             eeEEEEecCCCCCH----HHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          396 HLVLVDLRPMGIDG----ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       396 ~~~~vd~~~~g~~~----~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      .+.++...+.+...    ..+.+.|.+.||.+     |    +     ++|+.      .++++|++++.+.+++++...
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~-----p----~-----l~is~------~ht~~dId~~l~~l~~~l~~~  406 (431)
T PRK06209        347 CLTYSTLDGNGQPSQAFRTLFLQETIRRGVLM-----P----S-----LVVSY------AHGDADIERTIDAVHGALGVY  406 (431)
T ss_pred             EEEEecCCcccCCcHHHHHHHHHHHHHCCccc-----c----c-----ccccc------cCCHHHHHHHHHHHHHHHHHH
Confidence            22222111111111    23556677889875     1    1     34442      256899999999999998764

>PRK05965 hypothetical protein; Provisional

Probab=99.09  E-value=2.1e-07  Score=99.57  Aligned_cols=327  Identities=15%  Similarity=0.089  Sum_probs=167.8

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC----
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  180 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all----  180 (520)
                      -.|.|.+|+.+.+.+- ....+  .+...++   ...+ ..+++.+++..+.+.   ....+|||+|+.+++....    
T Consensus        63 ~~p~i~~Ai~~q~~~~-~~~~~--~~~~~~~---~~~~-lae~L~~~~p~~~~~---v~f~~sGSEAve~AlKlAr~~~~  132 (459)
T PRK05965         63 GQESIVEAAAEQMREL-PYATG--YFHFGSE---PAIR-LAAKLAERAPGSLNH---VYFTLGGSDAVDSAVRFIRHYWN  132 (459)
T ss_pred             CCHHHHHHHHHHHHhc-CCccc--ccccCCH---HHHH-HHHHHHhhCCCCcCE---EEEeCChhHHHHHHHHHHHHHHH
Confidence            4688889888877642 11000  0001112   1122 335666766432221   2345789999998876421    


Q ss_pred             ---CCC-CEEEEcCCCCCccccc-----ccccccccc--ccccceEEEEEcccCC-CCCCCC--------HHHHHHHhhh
Q 010008          181 ---KPH-DRIMGLDLPHGGHLSH-----GFMTPKRRV--SGTSIYFESMPYRLDE-STGLVD--------YDMLEKTAIL  240 (520)
Q Consensus       181 ---~pG-D~Vl~~~~~~~ghls~-----g~~~~~~~v--~~~g~~~~~v~~~~d~-~~~~iD--------~d~le~~i~~  240 (520)
                         ++| .+|+..+-.|.|.-..     +........  ...+  ...++++... ....-|        ++++++.+..
T Consensus       133 ~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  210 (459)
T PRK05965        133 ATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPW--QHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAE  210 (459)
T ss_pred             hcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCC--CEEcCCCcccccccCCChHHHHHHHHHHHHHHHHh
Confidence               133 5788887655332100     000000000  0001  1122222100 001113        2567777753


Q ss_pred             c---CCcEEEEcCC-CCCC-----CCCHHHHHHHHHHhCCEEEEechhhccccccccc--CCCCC-cccEEEeccCcccC
Q 010008          241 F---RPKLIIAGAS-AYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSLR  308 (520)
Q Consensus       241 ~---~pklIi~~~s-~~p~-----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~--~~p~~-~aDiv~~S~hK~l~  308 (520)
                      .   +.-+||+..- ...+     ..-+++++++|++||+++|+|+.+. |+--.|..  ..-+. ..|+++++  |.|+
T Consensus       211 ~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~t-GfGRtG~~~a~~~~gv~PDiv~~g--Kgl~  287 (459)
T PRK05965        211 LGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVIT-GFGRTGPLFACEAEGVVPDLMTVA--KGLT  287 (459)
T ss_pred             cCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhc-cCccCchhhhHhhcCCCCCeEEec--hhhc
Confidence            2   3456676522 1222     2237899999999999999999853 43111110  00011 36999887  9986


Q ss_pred             CC--CceEEEeeCCCcchhhHHHhhccc-------CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 010008          309 GP--RGGMIFFKKDPVLGVELESAINNA-------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALAS  379 (520)
Q Consensus       309 Gp--rgG~I~~~~~~~~~~~l~~~i~~~-------~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~  379 (520)
                      |.  ..|.+++++      ++.+.+...       ...++.++......++++ .|+.+.+++   ..+++.+..++|.+
T Consensus       288 gG~~Pi~av~~~~------~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a-~L~~l~~~~---l~~~~~~~g~~l~~  357 (459)
T PRK05965        288 SGYVPMGAVLMSD------HVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLE-VLRLYHEGG---LLANGQKAGPRFAA  357 (459)
T ss_pred             cCCcceeEEEEcH------HHHHHHhccccccccccccCCCCCCHHHHHHHHH-HHHHHHhcc---HHHHHHHHHHHHHH
Confidence            53  467777877      565555321       112233443333334443 466665433   34556666777777


Q ss_pred             HHHHC-CCEEecC--CCCCeeEEEEecCC-----CCC-----HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCC
Q 010008          380 RLVEL-GYKLVSG--GSDNHLVLVDLRPM-----GID-----GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPA  446 (520)
Q Consensus       380 ~L~~~-G~~v~~~--gt~~~~~~vd~~~~-----g~~-----~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~  446 (520)
                      .|++. .+.++..  |. ..+.-+.+...     ..+     ...+.+.+.+.||.+..         .+...||+..| 
T Consensus       358 ~l~~l~~~~~v~~vrG~-Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~---------~g~~~i~~~Pp-  426 (459)
T PRK05965        358 GLDALRAHPLVGDVRGR-GLLGALELVADKATKTPFDAALDPADRIFDRAYANGLVFRA---------FGDGVLGFAPA-  426 (459)
T ss_pred             HHHhhccCCCEEEEeec-ceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCeEEEe---------cCCcEEEEECC-
Confidence            77662 2222221  11 12233444211     001     23466677889999842         12356899654 


Q ss_pred             ccccCCCHHHHHHHHHHHHHHHHH
Q 010008          447 MTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       447 ~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      ++   ++++|++++.+.+.++++.
T Consensus       427 L~---it~~ei~~~~~~l~~~l~~  447 (459)
T PRK05965        427 LC---CTEGEFDLIFERTRKTLDD  447 (459)
T ss_pred             Cc---CCHHHHHHHHHHHHHHHHH
Confidence            44   5799999999999999974

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=99.08  E-value=1.4e-07  Score=95.97  Aligned_cols=285  Identities=17%  Similarity=0.107  Sum_probs=167.1

Q ss_pred             HHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhh---CCCCCEEEEcCCCCCccccccccccccccccccceEEEEE
Q 010008          144 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAI---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMP  219 (520)
Q Consensus       144 a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~al---l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~  219 (520)
                      -+..+++|.|.+-.    |-...-++ .+-.++.++.   -++..+++++.-.|.-++.--      .-...+.+++++.
T Consensus       125 fQtlv~dLTGm~VA----NASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl------~Tra~~~g~~i~~  194 (450)
T COG0403         125 FQTLVADLTGLDVA----NASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVL------RTRAEGLGIEIEV  194 (450)
T ss_pred             HHHHHHHHhCCCcc----cchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHH------HhhcccCceEEEE
Confidence            34667888898752    33233343 3334455554   233689998887665443211      1123344456666


Q ss_pred             cccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cc
Q 010008          220 YRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YC  296 (520)
Q Consensus       220 ~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~a  296 (520)
                      ++.+      |.+++++. ....+-.+++.+|+.-+  ..|+++|.+++|++|+++++=    +..++.++...|-+ |+
T Consensus       195 ~~~~------d~~~l~~~-~~~~~~gv~vQyP~~~G~~~~d~~~l~~~~h~~~al~~v~----aDplaL~LL~pPGe~GA  263 (450)
T COG0403         195 VDAD------DLDDLESA-DDGDVFGVLVQYPNTFGIVEEDLRALIEAAHSAGALVIVA----ADPLALGLLKPPGEFGA  263 (450)
T ss_pred             eccc------hhhhhhhc-cccCeEEEEEecCCCCCccchhHHHHHHHHhhcCCEEEEE----echhHhhccCCccccCC
Confidence            5443      77888877 44367788898888654  557999999999999988873    33444455556666 89


Q ss_pred             cEEEeccCc-----ccCCCCceEEEeeCCC-----c------------c-----hhhHHHhhcccCCCCCCCCChHHHHH
Q 010008          297 DVVTTTTHK-----SLRGPRGGMIFFKKDP-----V------------L-----GVELESAINNAVFPGLQGGPHNHTIG  349 (520)
Q Consensus       297 Div~~S~hK-----~l~GprgG~I~~~~~~-----~------------~-----~~~l~~~i~~~~~p~~~g~p~~~~ia  349 (520)
                      ||++++++-     +|+||..|+..++++.     +            .     +..-++.|++..-....+  .+..+.
T Consensus       264 DIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNIC--TnQaLl  341 (450)
T COG0403         264 DIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNIC--TNQALL  341 (450)
T ss_pred             ceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhh--HHHHHH
Confidence            999999996     3688999999998741     0            0     011122232211111111  122333


Q ss_pred             HHHHHH--HHhcCchhHHHHHHHHHHHHHHHHHHHH--CCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcC
Q 010008          350 GLAVCL--KHAQSPEFKVYQNKVVSNCRALASRLVE--LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNK  425 (520)
Q Consensus       350 ala~al--~~~~~~~~~~~~~~i~~na~~l~~~L~~--~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~  425 (520)
                      |+++++  -.+...+.++..+++.+.+.+++++|++  .|++++..   .++--+-++-.......+.+.....||-+..
T Consensus       342 A~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~---~fFdt~~v~~~~~~~~~l~~~~~~~G~~L~~  418 (450)
T COG0403         342 ALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFD---HFFDTFTVRVPEEVAEALLAAAIAGGINLRR  418 (450)
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccc---cceeeEEEecchhHHHHHHHHHHhcCCceee
Confidence            333332  2334456799999999999999999995  56888753   2322222321110122333444456666643


Q ss_pred             CCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          426 NSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       426 ~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      -         .+..+=++....+    +++|++.+++.+...
T Consensus       419 ~---------~~~~~~ia~tEt~----t~~~i~~l~~~~~~~  447 (450)
T COG0403         419 V---------DADTVLIALTETT----TKEDIDALVAAFGGV  447 (450)
T ss_pred             e---------cCCceEEEeeccc----CHHHHHHHHHHHhhh
Confidence            1         1234555555444    479999998887643

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.07  E-value=1e-07  Score=101.80  Aligned_cols=329  Identities=16%  Similarity=0.140  Sum_probs=168.6

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh--CC
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK  181 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al--l~  181 (520)
                      .-.|.|.+|+...+.+..   +....++. ++   ...++ .+++.+++....+.   ....+|||+|+.+++...  ..
T Consensus        69 h~~p~i~~Ai~~ql~~~~---~~~~~~~~-~~---~~~~l-ae~L~~~~p~~~~~---v~f~~SGsEA~e~AlklAr~~t  137 (457)
T PRK05639         69 YSHPKLVKAVQEQVALIQ---HSMIGYTH-SE---RAIRV-AEKLAEISPIENPK---VLFGLSGSDAVDMAIKVSKFST  137 (457)
T ss_pred             CCCHHHHHHHHHHHHhcc---ccccCccC-CH---HHHHH-HHHHHhhCCCCcCE---EEEeCchHHHHHHHHHHHHHhc
Confidence            357888888887775421   11111111 11   11222 35666776543222   234689999999887643  22


Q ss_pred             CCCEEEEcCCCCCccccccccc-------cccccc-cccceEEEEEcccCCC-----CCCCCHH--------HHHHHhh-
Q 010008          182 PHDRIMGLDLPHGGHLSHGFMT-------PKRRVS-GTSIYFESMPYRLDES-----TGLVDYD--------MLEKTAI-  239 (520)
Q Consensus       182 pGD~Vl~~~~~~~ghls~g~~~-------~~~~v~-~~g~~~~~v~~~~d~~-----~~~iD~d--------~le~~i~-  239 (520)
                      ...+|+...-.|.|.- .+...       ...... ... .+..++++....     +..-|.+        .+++.+. 
T Consensus       138 gr~~ii~~~~~yHG~t-~~a~s~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~  215 (457)
T PRK05639        138 RRPWILAFIGAYHGQT-LGATSVAAFQSSQKRGFSPLMP-NVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFS  215 (457)
T ss_pred             CCCeEEEECCCcCCcc-HHHHHHcCCCcccccCCCCCCC-CceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHH
Confidence            3357877765543321 00000       000000 000 112233321000     0001222        3444432 


Q ss_pred             ----hcCCcEEEEcCC-CCCC-----CCCHHHHHHHHHHhCCEEEEechhhccccccccc--CCCCC-cccEEEeccCcc
Q 010008          240 ----LFRPKLIIAGAS-AYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKS  306 (520)
Q Consensus       240 ----~~~pklIi~~~s-~~p~-----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~--~~p~~-~aDiv~~S~hK~  306 (520)
                          ..+..+||+..- ..++     .--+++++++|+++|+++|+|++|. |+--.|..  ..-+. ..|++++  .|.
T Consensus       216 ~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G~GrtG~~~a~~~~gv~PDiv~~--gK~  292 (457)
T PRK05639        216 HVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQT-GIGRTGKWFASEWFEVKPDLIIF--GKG  292 (457)
T ss_pred             hhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-ccCcCchHHHHHhcCCCCCEEEe--chh
Confidence                124566777521 1112     2238899999999999999999986 54222210  00111 3688885  599


Q ss_pred             cC-CCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH--
Q 010008          307 LR-GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE--  383 (520)
Q Consensus       307 l~-GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~--  383 (520)
                      ++ |...|.+++++      ++.+......+ ++.+++.....++++ +|+.+.+.+   ..++..+..++|.+.|++  
T Consensus       293 l~gG~pi~av~~~~------~i~~~~~~~~~-~T~~g~p~~~aaa~a-~l~~l~~~~---l~~~~~~~g~~l~~~L~~l~  361 (457)
T PRK05639        293 VASGMGLSGVIGRK------ELMDLTSGSAL-LTPAANPVISAAAEA-TLEIIEEEN---LLKNALKVGEFIKKRLLEMK  361 (457)
T ss_pred             hcCCCcceeEEehH------HHHhhcCCCcc-cCCCcCHHHHHHHHH-HHHHHHHcc---HHHHHHHHHHHHHHHHHHHH
Confidence            96 44448888887      55552221111 233443333333333 576665433   456666667778877766  


Q ss_pred             CCCEEecC--CCCCeeEEEEecCC-CC-C---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHH
Q 010008          384 LGYKLVSG--GSDNHLVLVDLRPM-GI-D---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKE  456 (520)
Q Consensus       384 ~G~~v~~~--gt~~~~~~vd~~~~-g~-~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d  456 (520)
                      .++.++..  |. .-+.-+.+... .. +   ...+.+.|.+.||.+...       ......||+..|. +   ++++|
T Consensus       362 ~~~~~~~~VrG~-Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~-------g~~~~~lr~~Ppl-~---it~~~  429 (457)
T PRK05639        362 ESFEVIGDVRGK-GLMIGVEIVKENGKPDPELTGKICWRAFELGLILPSY-------GMFGNVIRITPPL-V---ITKEI  429 (457)
T ss_pred             HhCCCEEeeccc-eeEEEEEEecCCCCCCHHHHHHHHHHHHhCCeEEeec-------CCCCCEEEEeCCC-c---cCHHH
Confidence            23443321  21 12233333211 10 1   234666777899998431       1124679997653 3   56999


Q ss_pred             HHHHHHHHHHHHHHH
Q 010008          457 FVAIADFIHEGVEIT  471 (520)
Q Consensus       457 ~~~la~~i~~~l~~~  471 (520)
                      ++++.+.++++++..
T Consensus       430 id~~~~~l~~~l~~~  444 (457)
T PRK05639        430 AEKGLEIMERAIKDA  444 (457)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998754

>PRK07481 hypothetical protein; Provisional

Probab=99.07  E-value=1.9e-07  Score=99.70  Aligned_cols=184  Identities=17%  Similarity=0.259  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHhCCEEEEechhhcccccccc-c-CCCCC-cccEEEeccCcccCCC--CceEEEeeCCCcchhhHHHhhcc
Q 010008          259 YPRMRQIADAVGALLMMDMAHISGLVAASV-V-ADPFK-YCDVVTTTTHKSLRGP--RGGMIFFKKDPVLGVELESAINN  333 (520)
Q Consensus       259 ~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~-~~p~~-~aDiv~~S~hK~l~Gp--rgG~I~~~~~~~~~~~l~~~i~~  333 (520)
                      +++++++|+++|+++|.|+.+. |+--.+. . ..-+. ..|+++.+  |.++|.  ..|.+++++      ++.+.+..
T Consensus       236 l~~lr~lc~~~g~llI~DEV~t-GfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~~Pi~av~~~~------~i~~~~~~  306 (449)
T PRK07481        236 WPLVREVCDRHGILLIADEVVT-GFGRTGSWFGSRGWGVKPDIMCLA--KGITSGYVPLGATMVNA------RIADAFEA  306 (449)
T ss_pred             HHHHHHHHHHcCCEEEEeehhh-CcCcCchhhHhhhcCCCCCEEEEe--ecccCCCcCceEEEEcH------HHHHHHhc
Confidence            8899999999999999999864 4321111 0 00011 36898886  999652  467777777      56655542


Q ss_pred             c-------CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCEEecC--CCCCeeEEEEe
Q 010008          334 A-------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVSG--GSDNHLVLVDL  402 (520)
Q Consensus       334 ~-------~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~v~~~--gt~~~~~~vd~  402 (520)
                      .       ...++.++......+++ ..|+.+.+++   ..+++.+..+.|.+.|++.  .+.++..  |. ..+.-+++
T Consensus       307 ~~~~~~~~~h~~T~~gnpl~~aaa~-a~L~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~-Glm~gi~l  381 (449)
T PRK07481        307 NADFGGAIMHGYTYSGHPVACAAAL-ATLDIVVRED---LPANAAKRGAYLLEGLQPLKERFELVGDVRGK-GLMLALDL  381 (449)
T ss_pred             cCccccccccCCCCCCCHHHHHHHH-HHHHHHHhhh---HHHHHHHHHHHHHHHHHHHhhcCCCeEEEeec-ceEEEEEe
Confidence            1       11223334333333333 3566655433   3455666667777777652  2333221  21 22333444


Q ss_pred             cCCC-----CC-----HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          403 RPMG-----ID-----GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       403 ~~~g-----~~-----~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      ....     .+     ...+.+.|.+.||.+...          ...+||..| ++   ++++|++++.+.++++++.
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~----------g~~i~l~Pp-l~---it~~eid~~~~~l~~~l~~  445 (449)
T PRK07481        382 VADKATREPIDPSKGYANAVADVARENGVLVRPS----------GTKIILSPP-LV---IQREDVDRIVDALDAGLSA  445 (449)
T ss_pred             cccccccCCCCchhHHHHHHHHHHHhCCeEEEec----------CCEEEEECC-CC---CCHHHHHHHHHHHHHHHHh
Confidence            2110     01     234666777899998421          135898654 43   5699999999999998864

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.03  E-value=2.9e-07  Score=98.58  Aligned_cols=321  Identities=17%  Similarity=0.118  Sum_probs=168.9

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC---
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---  180 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all---  180 (520)
                      .-.|.|.+|+...+.+- ..+..   +...++.  .+  ...+++++++....+.   ....+|||+|+.+++....   
T Consensus        72 h~~p~v~~Ai~~ql~~l-~~~~~---~~~~~~~--~~--~lae~L~~~~p~~~~~---v~f~~SGseAve~AlklAr~~~  140 (460)
T PRK06916         72 HQVPELDEAIREQLNKI-AHSTL---LGLANVP--SI--LLAEKLIEVVPEGLKK---VFYSDSGATAVEIAIKMAFQYW  140 (460)
T ss_pred             CCCHHHHHHHHHHHHhC-CCccc---cccCCHH--HH--HHHHHHHHhCCCCCCE---EEEeCCcHHHHHHHHHHHHHHH
Confidence            45788888888877642 11111   1111221  12  2335677776533221   3456899999998876432   


Q ss_pred             ----CCC-CEEEEcCCCCCccccccccccccccccccc------------eEEEEEccc--C-CCCC------CCCHHHH
Q 010008          181 ----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRL--D-ESTG------LVDYDML  234 (520)
Q Consensus       181 ----~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~------------~~~~v~~~~--d-~~~~------~iD~d~l  234 (520)
                          .+| .+|+...-.|.|.- .+      .+++.+.            ....++++.  . +...      .-|++.+
T Consensus       141 ~~~g~tgr~~ii~~~~~YHG~t-~~------als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l  213 (460)
T PRK06916        141 QNKGKPKKQRFVTLKNAYHGDT-IG------AVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEEL  213 (460)
T ss_pred             HhcCCCCCcEEEEECCcCCccc-HH------hHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHH
Confidence                243 67888876543321 01      1111110            011122221  0 0000      1235666


Q ss_pred             HHHhhhc--CCcEEEEcC--CCCCC-----CCCHHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEec
Q 010008          235 EKTAILF--RPKLIIAGA--SAYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTT  302 (520)
Q Consensus       235 e~~i~~~--~pklIi~~~--s~~p~-----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S  302 (520)
                      ++.+...  +.-+||+..  ...++     ..-+++++++|+++|+++|+|+.+ .|+--.|.. . .-+. ..|+++++
T Consensus       214 ~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~-TG~GRtG~~~a~~~~gv~PDiv~~g  292 (460)
T PRK06916        214 EELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVA-TGFGRTGKMFACEHENVTPDIMTAG  292 (460)
T ss_pred             HHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechh-hCCCcCchhhHHHhcCCCCCeeeee
Confidence            7777532  445667654  12222     123789999999999999999986 443212210 0 0011 36888765


Q ss_pred             cCcccCCC--CceEEEeeCCCcchhhHHHhhcc------cCC-CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010008          303 THKSLRGP--RGGMIFFKKDPVLGVELESAINN------AVF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN  373 (520)
Q Consensus       303 ~hK~l~Gp--rgG~I~~~~~~~~~~~l~~~i~~------~~~-p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~n  373 (520)
                        |.|.|.  ..|.+++++      ++.+.+..      ..+ .++.++......+++ +.|+.+.+++   +.+++.+.
T Consensus       293 --K~l~gG~~Pi~av~~~~------ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~-a~l~~l~~~~---l~~~~~~~  360 (460)
T PRK06916        293 --KGLTGGYLPIAITVTTD------EIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVAL-ANLELYEKTN---LIEQVARK  360 (460)
T ss_pred             --hhhhcCccccceeeecH------HHHHHhhccccccCccccCCCCCCCHHHHHHHH-HHHHHHHhcc---HHHHHHHH
Confidence              998543  457777776      55554421      112 223444333333333 3566655433   45666667


Q ss_pred             HHHHHHHHHHC-CCEEec--CCCCCeeEEEEecCCC-------CC---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEE
Q 010008          374 CRALASRLVEL-GYKLVS--GGSDNHLVLVDLRPMG-------ID---GARVEKILDMASITLNKNSVPGDKSALVPGGI  440 (520)
Q Consensus       374 a~~l~~~L~~~-G~~v~~--~gt~~~~~~vd~~~~g-------~~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~gi  440 (520)
                      .++|.+.|++. ...++.  .|. .-+.-+.+....       .+   +..+...|.+.||.+..    .      ...+
T Consensus       361 g~~l~~~l~~l~~~~~v~~vrG~-Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~----~------g~~l  429 (460)
T PRK06916        361 TEYVATQLEDLFALKHVGDIRQL-GLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRP----L------GNTI  429 (460)
T ss_pred             HHHHHHHHHHhhcCCCeEEeecC-CceeeEEeecccccccCCCchhhHHHHHHHHHHHCCeEEEe----c------CCEE
Confidence            77777777652 122221  111 122223332110       01   23466777889999842    1      2478


Q ss_pred             EEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          441 RIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       441 Rig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      |+..| ++   ++++|++++.+.+++++..
T Consensus       430 ~~~Pp-l~---it~~~id~~~~~l~~~l~~  455 (460)
T PRK06916        430 VFMPP-LA---STIDELDEMLRILYKAISD  455 (460)
T ss_pred             EEeCC-cc---cCHHHHHHHHHHHHHHHHh
Confidence            88533 44   6799999999999999864

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.03  E-value=7.7e-07  Score=95.11  Aligned_cols=321  Identities=12%  Similarity=0.086  Sum_probs=169.2

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC---
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---  180 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all---  180 (520)
                      .-.|.|.+|+...+.+ +...... .+  .++  ..++  ..+++.++++...+.   ....+|||+|+.+++....   
T Consensus        70 h~~p~v~~Ai~~ql~~-~~~~~~~-~~--~~~--~~~~--lAe~L~~~~p~~~~~---v~f~~sGseAve~AlKlA~~~~  138 (453)
T PRK06943         70 HANPRINAALKDQLDT-LEHAMLA-GC--THE--PAIE--LAERLAALTGGTLGH---AFFASDGASAVEIALKMSFHAW  138 (453)
T ss_pred             CCCHHHHHHHHHHHHh-cCCcccc-cc--CCH--HHHH--HHHHHHHhCCCCCCE---EEEeCCCHHHHHHHHHHHHHHH
Confidence            4578888888877753 2111110 01  111  1222  335677776543221   2346799999998876531   


Q ss_pred             ----CCC-CEEEEcCCCCCccccccccccccccccccc------------eEEEEEcccCCC--CC-------CCCHHHH
Q 010008          181 ----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDES--TG-------LVDYDML  234 (520)
Q Consensus       181 ----~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~------------~~~~v~~~~d~~--~~-------~iD~d~l  234 (520)
                          .+| .+|+...-.|.|.- -+      .+++.|.            .+..++++....  ..       .-|++++
T Consensus       139 ~~rg~~~r~~Ii~~~~~yHG~t-~g------als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l  211 (453)
T PRK06943        139 RNRGRGDKREFVCLANGYHGET-IG------ALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADV  211 (453)
T ss_pred             HHhCCCCCCEEEEECCCcCCCc-HH------hhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHH
Confidence                223 67888876543321 00      0111110            011222221000  00       0134677


Q ss_pred             HHHhhhc--CCcEEEEcC--CCCCC-----CCCHHHHHHHHHHhCCEEEEechhhcccccccc-cC-CCCC-cccEEEec
Q 010008          235 EKTAILF--RPKLIIAGA--SAYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASV-VA-DPFK-YCDVVTTT  302 (520)
Q Consensus       235 e~~i~~~--~pklIi~~~--s~~p~-----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~-~p~~-~aDiv~~S  302 (520)
                      ++.+..+  +..+||+..  ...++     ..-+++++++|++||+++|.|+.+ .|+--.|. .. .-+. ..|+++++
T Consensus       212 ~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~-TG~GRtG~~fa~~~~gv~PDivt~g  290 (453)
T PRK06943        212 RRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIA-VGCGRTGTFFACEQAGVWPDFLCLS  290 (453)
T ss_pred             HHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechh-hCCCCCcchhHHHhCCCCCCeEeee
Confidence            7777532  455677654  12222     223789999999999999999985 34311121 00 0011 36999886


Q ss_pred             cCcccCCC--CceEEEeeCCCcchhhHHHhhccc-----C-CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010008          303 THKSLRGP--RGGMIFFKKDPVLGVELESAINNA-----V-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNC  374 (520)
Q Consensus       303 ~hK~l~Gp--rgG~I~~~~~~~~~~~l~~~i~~~-----~-~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na  374 (520)
                        |.+.|.  ..|.+++++      ++.+.+...     . ..++.++......+++ ..|+.+.+++   ..+++.+..
T Consensus       291 --Kgl~gG~~Pi~av~~~~------ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~-a~L~~i~~~~---l~~~~~~~G  358 (453)
T PRK06943        291 --KGISGGYLPLSLVLSRD------AIFAAFYDDDVTRGFLHSHSYTGNPLACRAAL-ATLDLFAEDD---VLARNARKS  358 (453)
T ss_pred             --hhhccCcccceEEEEcH------HHHHhhcccCccCCccCCCCCCCCHHHHHHHH-HHHHHHHhcC---HHHHHHHHH
Confidence              998543  467777877      565555321     1 1223333333333333 3566665443   345555666


Q ss_pred             HHHHHHHHHC-CCEEecC--CCCCeeEEEEecCCC-CC---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCc
Q 010008          375 RALASRLVEL-GYKLVSG--GSDNHLVLVDLRPMG-ID---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAM  447 (520)
Q Consensus       375 ~~l~~~L~~~-G~~v~~~--gt~~~~~~vd~~~~g-~~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~  447 (520)
                      ++|.+.|++. ....+..  |. ..+.-+.+.... ..   ...+.+.+.+.||.+...          ...+|+..| +
T Consensus       359 ~~l~~~L~~l~~~~~v~~vrG~-Gl~~gvel~~~~~~~~~~~~~i~~~~~~~Gll~~~~----------g~~l~~~Pp-l  426 (453)
T PRK06943        359 ARLRAALAPLAAHPQVRHLRQR-GTIFAFDVALDGDAARTFSRRFFEAALERELLLRPI----------GTTVYLMPP-Y  426 (453)
T ss_pred             HHHHHHHHHHhcCCCEEeEecc-ccEEEEEEccCCCcchHHHHHHHHHHHHCCcEEEec----------CCEEEEeCC-C
Confidence            7777777652 1222211  11 223334453111 11   234666778899998421          135899744 4


Q ss_pred             cccCCCHHHHHHHHHHHHHHHHH
Q 010008          448 TTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       448 tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +   ++++|++++.+.+++++..
T Consensus       427 ~---it~~eid~~~~~l~~al~~  446 (453)
T PRK06943        427 V---LDDDEIAWLAERTRATLDA  446 (453)
T ss_pred             c---CCHHHHHHHHHHHHHHHHH
Confidence            4   5699999999999999874

>PRK06149 hypothetical protein; Provisional

Probab=99.03  E-value=5.2e-07  Score=105.03  Aligned_cols=327  Identities=14%  Similarity=0.078  Sum_probs=166.3

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHH---hhCC
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT---AILK  181 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~---all~  181 (520)
                      -.|.|.+|+...+.... .   ..+|+  ++...+   + .+++++++.-..+   .....+||++||.+++.   ++..
T Consensus       600 ~hp~v~~Ai~~q~~~l~-~---~~~~~--~~~~~e---l-ae~L~~~~p~~~~---~v~f~~SGsEA~e~AlklAr~~tg  666 (972)
T PRK06149        600 GHPRLAAAAARQWSLLN-T---NSRFH--YAAVAE---F-SERLAALAPDGLD---TVFLVNSGSEANDLAIRLAWAASG  666 (972)
T ss_pred             CCHHHHHHHHHHHHhcc-c---ccccc--CHHHHH---H-HHHHHHhCCCCcC---EEEEeCCchHHHHHHHHHHHHhcC
Confidence            47899999887775321 1   11332  222222   2 2567777732112   12446899999998887   3332


Q ss_pred             CCCEEEEcCCCCCc-cccc----ccccccccc--ccccceEEEEEcccC-CCCC-CCC-----HHHHHHHhhh-----cC
Q 010008          182 PHDRIMGLDLPHGG-HLSH----GFMTPKRRV--SGTSIYFESMPYRLD-ESTG-LVD-----YDMLEKTAIL-----FR  242 (520)
Q Consensus       182 pGD~Vl~~~~~~~g-hls~----g~~~~~~~v--~~~g~~~~~v~~~~d-~~~~-~iD-----~d~le~~i~~-----~~  242 (520)
                       ..+|+..+-.|.| ++..    +........  ...+ ++..++++-. ...+ ..|     .+++++.++.     .+
T Consensus       667 -r~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~-~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  744 (972)
T PRK06149        667 -RRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPD-WVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRG  744 (972)
T ss_pred             -CCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCC-CeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCc
Confidence             3567776654422 2100    000000000  0000 1122221100 0001 011     2344433321     13


Q ss_pred             CcEEEEcC--CCCCCCCC----HHHHHHHHHHhCCEEEEechhh-cccccccccC-CCCC-cccEEEeccCcccCC-CCc
Q 010008          243 PKLIIAGA--SAYPRDFD----YPRMRQIADAVGALLMMDMAHI-SGLVAASVVA-DPFK-YCDVVTTTTHKSLRG-PRG  312 (520)
Q Consensus       243 pklIi~~~--s~~p~~~d----~~~i~~ia~~~g~~li~D~Ah~-~gli~~~~~~-~p~~-~aDiv~~S~hK~l~G-prg  312 (520)
                      +.+||+..  ++.+...+    +++++++|+++|+++|+|++|. .|-....... .-+. ..|++++  .|.++| -..
T Consensus       745 iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~--gK~lg~G~Pl  822 (972)
T PRK06149        745 LAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITM--AKGMGNGHPL  822 (972)
T ss_pred             eEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEe--cccccCCeee
Confidence            45666652  22222444    8999999999999999999972 3322110000 0011 3688865  599954 345


Q ss_pred             eEEEeeCCCcchhhHHHhhcc-cCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCEEe
Q 010008          313 GMIFFKKDPVLGVELESAINN-AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLV  389 (520)
Q Consensus       313 G~I~~~~~~~~~~~l~~~i~~-~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~v~  389 (520)
                      |++++++      ++.+.+.. ..+....++......++++ .|+.+.+++   ..+++.+.-++|.+.|++.  ...++
T Consensus       823 ~av~~~~------~i~~~~~~~~~~~sT~~gnP~~~aaala-~L~~i~~e~---l~~~~~~~G~~l~~~L~~l~~~~~~i  892 (972)
T PRK06149        823 GAVITRR------EIAEALEAEGYFFSSTGGSPVSCRIGMA-VLDVLREEK---LQENARRVGDHLKARLEALADRHPLI  892 (972)
T ss_pred             EEEEEcH------HHHhhhccCCcccCCCCCCHHHHHHHHH-HHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            8888887      56666543 2222234454444444444 577665433   3455555566777777652  12222


Q ss_pred             c--CCCCCeeEEEEecCC----CCC---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHH
Q 010008          390 S--GGSDNHLVLVDLRPM----GID---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAI  460 (520)
Q Consensus       390 ~--~gt~~~~~~vd~~~~----g~~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~l  460 (520)
                      .  .|. ..+.-+.+...    .-+   ...+.+.|.+.||.+...   |    .....|||..| ++   ++++|++++
T Consensus       893 ~~vrG~-Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~---g----~~~~vl~~~Pp-l~---it~~~id~~  960 (972)
T PRK06149        893 GAVHGM-GLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPT---G----DHLNILKIKPP-LC---LDRESADFF  960 (972)
T ss_pred             EEEeec-ceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeec---C----CCCCEEEEECC-Cc---CCHHHHHHH
Confidence            2  121 12333344211    011   234667778899998531   1    11357999644 44   569999999


Q ss_pred             HHHHHHHHHH
Q 010008          461 ADFIHEGVEI  470 (520)
Q Consensus       461 a~~i~~~l~~  470 (520)
                      .+.+++++..
T Consensus       961 ~~~l~~~l~~  970 (972)
T PRK06149        961 VDMLDRVLTE  970 (972)
T ss_pred             HHHHHHHHHh
Confidence            9999998863

>PRK07482 hypothetical protein; Provisional

Probab=99.01  E-value=1.1e-06  Score=94.13  Aligned_cols=215  Identities=15%  Similarity=0.137  Sum_probs=119.8

Q ss_pred             CHHHHHHHhhh---cCCcEEEEcCC-CCCC-----CCCHHHHHHHHHHhCCEEEEechhhcccccccc-cC-CCCC-ccc
Q 010008          230 DYDMLEKTAIL---FRPKLIIAGAS-AYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASV-VA-DPFK-YCD  297 (520)
Q Consensus       230 D~d~le~~i~~---~~pklIi~~~s-~~p~-----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~-~p~~-~aD  297 (520)
                      +++.+++.+..   .+.-+||+..- ...+     .--+++|+++|++||+++|+|+.+. |+--.|. .. .-+. ..|
T Consensus       205 ~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~t-GfGRtG~~~a~~~~gv~PD  283 (461)
T PRK07482        205 CADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVT-GFGRLGSMFGSDHYGIEPD  283 (461)
T ss_pred             HHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEecccc-CCCcCcchhhHHhcCCCCC
Confidence            45777877742   13456776522 2222     1237899999999999999999853 4311110 00 0011 369


Q ss_pred             EEEeccCcccCCC--CceEEEeeCCCcchhhHHHhhcc------cC-CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHH
Q 010008          298 VVTTTTHKSLRGP--RGGMIFFKKDPVLGVELESAINN------AV-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN  368 (520)
Q Consensus       298 iv~~S~hK~l~Gp--rgG~I~~~~~~~~~~~l~~~i~~------~~-~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~  368 (520)
                      +++++  |.+.|.  ..|.+++++      ++.+.+..      .. ..++.++.... .|+..+.|+.+.+++   ..+
T Consensus       284 iv~~g--Kgl~gG~~Pi~av~~~~------~i~~~~~~~~~~~~~~~h~~T~~gnpl~-~Aaa~a~L~~~~~~~---l~~  351 (461)
T PRK07482        284 LITVA--KGLTSAYAPLSGSIVGE------KVWDVLEQGSDEHGAIGHGWTYSGHPIC-AAAALANLDILEREN---LVG  351 (461)
T ss_pred             EEEEc--cccccCccccceeeecH------HHHHHHhcccccCCccccCCCCCcCHHH-HHHHHHHHHHHHhCC---HHH
Confidence            99976  999652  456666666      45554432      11 11233443333 333333577665544   345


Q ss_pred             HHHHHHHHHHHHHHHC--CCEEec--CCCCCeeEEEEecCCC-----CC-----HHHHHHHHhhcCeEEcCCCCCCCCCC
Q 010008          369 KVVSNCRALASRLVEL--GYKLVS--GGSDNHLVLVDLRPMG-----ID-----GARVEKILDMASITLNKNSVPGDKSA  434 (520)
Q Consensus       369 ~i~~na~~l~~~L~~~--G~~v~~--~gt~~~~~~vd~~~~g-----~~-----~~~~~~~L~~~gI~v~~~~~Pg~~~~  434 (520)
                      ++.+..++|.+.|++.  ...++.  .|. ..+.-+.+....     .+     ...+...|.+.||.+..  .|     
T Consensus       352 ~~~~~g~~l~~~L~~l~~~~~~v~~vrG~-Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~--~~-----  423 (461)
T PRK07482        352 NAAEVGAYFRARLRAAFGDHPLVGEVRGV-GMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARA--MP-----  423 (461)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCEEEEeec-eeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEec--CC-----
Confidence            5566677777777641  222222  111 123334442110     11     23466777889999842  11     


Q ss_pred             CCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          435 LVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       435 ~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                       ....+|+..| ++   ++++|++++.+.+++++..
T Consensus       424 -~~~~i~~~Pp-l~---it~~ei~~~~~~l~~~l~~  454 (461)
T PRK07482        424 -HGDILGFAPP-LV---LTRAEADEIVAIAKDAVDE  454 (461)
T ss_pred             -CCCEEEEeCC-CC---CCHHHHHHHHHHHHHHHHH
Confidence             1346898644 44   5799999999999999864

>PRK07480 putative aminotransferase; Validated

Probab=99.00  E-value=9.5e-07  Score=94.48  Aligned_cols=212  Identities=15%  Similarity=0.134  Sum_probs=115.6

Q ss_pred             HHHHHHhhh---cCCcEEEEcCC-CCCC-CCC----HHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEE
Q 010008          232 DMLEKTAIL---FRPKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVV  299 (520)
Q Consensus       232 d~le~~i~~---~~pklIi~~~s-~~p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv  299 (520)
                      +.+++.+..   .+..+||+..- ...+ ..+    +++++++|++||+++|+|+.+. |+--.|.. . .-+. ..|++
T Consensus       206 ~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~t-GfGRtG~~~a~~~~gv~PDiv  284 (456)
T PRK07480        206 RQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVIC-GFGRTGEWFGSQHFGIKPDLM  284 (456)
T ss_pred             HHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcCcchhhhhhcCCCCCee
Confidence            556555532   13456776522 2222 222    8999999999999999999863 33111210 0 0011 36888


Q ss_pred             EeccCcccCCC--CceEEEeeCCCcchhhHHHhhc--ccC--CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHH-HH
Q 010008          300 TTTTHKSLRGP--RGGMIFFKKDPVLGVELESAIN--NAV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV-VS  372 (520)
Q Consensus       300 ~~S~hK~l~Gp--rgG~I~~~~~~~~~~~l~~~i~--~~~--~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i-~~  372 (520)
                      +++  |.+.|.  ..|.+++++      ++.+.+.  ...  ..++.++... ..++...+|+.+.++++   .+++ .+
T Consensus       285 ~~g--K~l~gG~~Pi~av~~~~------~i~~~~~~~~~~~~~~~T~~gnpl-~~Aaa~a~L~~l~~~~l---~~~~~~~  352 (456)
T PRK07480        285 TIA--KGLTSGYIPMGAVGVGD------RVAEVLIEEGGEFNHGFTYSGHPV-AAAVALANLRILRDEGI---VERVRDD  352 (456)
T ss_pred             eee--hhhccCCccceEEEEcH------HHHHHHhcCCCCcccCCCCCcCHH-HHHHHHHHHHHHHhCCH---HHHHHHH
Confidence            775  999652  356666666      5655552  121  2233444333 33333345776654443   4444 34


Q ss_pred             HHHHHHHHHHHC-CCEEecC--CCCCeeEEEEecCCC-----C-C----HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCE
Q 010008          373 NCRALASRLVEL-GYKLVSG--GSDNHLVLVDLRPMG-----I-D----GARVEKILDMASITLNKNSVPGDKSALVPGG  439 (520)
Q Consensus       373 na~~l~~~L~~~-G~~v~~~--gt~~~~~~vd~~~~g-----~-~----~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~g  439 (520)
                      ..+.|.+.|++. ...++..  |. ..+.-+.+....     . +    ...+.+.|.+.||.+...          ...
T Consensus       353 ~g~~l~~~l~~l~~~~~i~~vrG~-Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----------~~~  421 (456)
T PRK07480        353 TGPYLQKRLRELADHPLVGEVRGV-GLVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRAV----------GDR  421 (456)
T ss_pred             HHHHHHHHHHHhhcCCCeeeEEee-cceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEEeec----------CCE
Confidence            556666666552 1222211  11 123333442110     0 1    234556677899998421          246


Q ss_pred             EEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          440 IRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       440 iRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      +|+..| ++   ++++|++++.+.+++++...
T Consensus       422 l~~~Pp-l~---it~~eid~~~~~l~~al~~~  449 (456)
T PRK07480        422 MIISPP-LV---ITHAEIDELVEKARKALDAT  449 (456)
T ss_pred             EEEECC-CC---CCHHHHHHHHHHHHHHHHHH
Confidence            899744 44   56999999999999998753

>PRK07483 hypothetical protein; Provisional

Probab=99.00  E-value=3.6e-07  Score=97.38  Aligned_cols=219  Identities=18%  Similarity=0.205  Sum_probs=121.0

Q ss_pred             HHHHHHhhh---cCCcEEEEcCCC--CCC-----CCCHHHHHHHHHHhCCEEEEechhhcccccccc-cC-CCCC-cccE
Q 010008          232 DMLEKTAIL---FRPKLIIAGASA--YPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASV-VA-DPFK-YCDV  298 (520)
Q Consensus       232 d~le~~i~~---~~pklIi~~~s~--~p~-----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~-~p~~-~aDi  298 (520)
                      +++++++..   .+..+||+..-.  .++     ..-+++++++|++||+++|+|+.+. |+--.|. .. .-+. ..|+
T Consensus       186 ~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-GfGRtG~~~a~~~~gv~PDi  264 (443)
T PRK07483        186 DELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMC-GMGRTGTLFACEEDGVAPDL  264 (443)
T ss_pred             HHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEeccee-CcccCcHHHHHhhcCCCCCe
Confidence            566665542   134567765321  222     1238899999999999999999864 4321121 00 0011 3689


Q ss_pred             EEeccCcccCCC--CceEEEeeCCCcchhhHHHhhccc--CC--CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010008          299 VTTTTHKSLRGP--RGGMIFFKKDPVLGVELESAINNA--VF--PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVS  372 (520)
Q Consensus       299 v~~S~hK~l~Gp--rgG~I~~~~~~~~~~~l~~~i~~~--~~--p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~  372 (520)
                      ++++  |.+.|.  ..|.+++++      ++.+.+...  .+  ..+.++......+++ +.++.+.+++   ..+++.+
T Consensus       265 v~~g--K~l~gG~~Pi~av~~~~------~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~-a~l~~i~~~~---l~~~~~~  332 (443)
T PRK07483        265 VTIA--KGLGAGYQPIGAVLASD------RIYDAIADGSGFFQHGHTYLGHATACAAAL-AVQRVIAEDG---LLANVRA  332 (443)
T ss_pred             eeeh--hhhccCccccEEEEEcH------HHHHHHhcCCCccccCCCCCCCHHHHHHHH-HHHHHHHhcC---HHHHHHH
Confidence            8886  999543  467777877      565555422  11  123344333333333 3566665443   4555666


Q ss_pred             HHHHHHHHHHH--CCCEEecC--CCCCeeEEEEecCC-----CCC-----HHHHHHHHhhcCeEEcCCCCCCCCCCCCCC
Q 010008          373 NCRALASRLVE--LGYKLVSG--GSDNHLVLVDLRPM-----GID-----GARVEKILDMASITLNKNSVPGDKSALVPG  438 (520)
Q Consensus       373 na~~l~~~L~~--~G~~v~~~--gt~~~~~~vd~~~~-----g~~-----~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~  438 (520)
                      ..++|.+.|++  ..+.++..  |. ..+.-+++...     ..+     ...+.+.+.+.||.+....  +........
T Consensus       333 ~g~~l~~~L~~l~~~~~~i~~vRG~-Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~--~~~~~~~~~  409 (443)
T PRK07483        333 RGEQLRARLRERLGQHPHVGDIRGR-GLFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMG--GTIDGVRGD  409 (443)
T ss_pred             HHHHHHHHHHHHHhcCCCeeeEeec-ccEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecC--ccccCCCCC
Confidence            67777777764  22332221  11 12233343211     001     2346677788999984310  000001135


Q ss_pred             EEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          439 GIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       439 giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      .||+..| ++   ++++|++++.+++++++..
T Consensus       410 ~l~~~Pp-L~---it~~eid~~~~~l~~~l~~  437 (443)
T PRK07483        410 HVLLAPP-FI---ITAAQIDEIVERLGDAIDA  437 (443)
T ss_pred             EEEEECC-CC---CCHHHHHHHHHHHHHHHHH
Confidence            7999654 54   5799999999999999874

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=5.4e-08  Score=97.37  Aligned_cols=330  Identities=18%  Similarity=0.187  Sum_probs=185.9

Q ss_pred             cCCCCC----hHHHHHHHhhhhhccCCCCCCCCC-CCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHH
Q 010008          100 ASENFT----SRAVMEAVGSCLTNKYSEGLPGKR-YYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE  174 (520)
Q Consensus       100 asen~~----~~~V~ea~~s~l~~~y~~G~p~~r-yy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~  174 (520)
                      +|.||.    .+.+.+.....+ .+|.-|.-|-| |||.-..--.+|    +++++.+|++..     |...-|-.++..
T Consensus       100 aS~NfL~l~~~~~ike~a~~~l-rkyGvGsCGPrGFYGt~DvHldlE----~~iakF~G~E~a-----ivYs~gF~ti~S  169 (467)
T KOG1358|consen  100 ASANFLGLIENEEIKEEASFTL-RKYGVGSCGPRGFYGTIDVHLDLE----KRIAKFMGTEDA-----IVYSYGFSTIES  169 (467)
T ss_pred             cchhhhhhcccHHHHHHHHHHH-HHhCCCCcCCCcccccceeecccH----HHHHHhhCCcce-----eeeccccchhhh
Confidence            466764    577888776665 45644443333 777554444566    789999999863     334456588888


Q ss_pred             HHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc------CCc----
Q 010008          175 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF------RPK----  244 (520)
Q Consensus       175 ~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~------~pk----  244 (520)
                      ++.|+.+.||.|.+..-.+-+..        +.+.++--  .+..+.      ..|+++++....+.      +||    
T Consensus       170 ~ipafsKrGDIi~~de~~nfaIq--------~GlqlSRS--~i~~Fk------hndm~~lerll~E~~~~~~K~~k~~~~  233 (467)
T KOG1358|consen  170 AIPAFSKRGDIIFVDEAVNFAIQ--------KGLQLSRS--TISYFK------HNDMEDLERLLPEQEDEDQKNPKKALT  233 (467)
T ss_pred             cchhhhccCcEEEEehhhhHHHH--------HHHhhhhh--eeEEec------CCCHHHHHHhccCcchhhhhccccccc
Confidence            99999999999987653221110        11111110  122222      34667776554331      122    


Q ss_pred             --EEEEc--CCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccc---cc--cC-CCCCcccEEEeccCcccCCCCceE
Q 010008          245 --LIIAG--ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA---SV--VA-DPFKYCDVVTTTTHKSLRGPRGGM  314 (520)
Q Consensus       245 --lIi~~--~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~---~~--~~-~p~~~aDiv~~S~hK~l~GprgG~  314 (520)
                        .|++.  +-|++...|+.+|.++..++...++.|++..+|....   |+  +. .+....|++++|+.-.++ -.||+
T Consensus       234 Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~ala-s~GgF  312 (467)
T KOG1358|consen  234 RRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALA-SGGGF  312 (467)
T ss_pred             eEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeeccccccc-ccCce
Confidence              34443  5677779999999999999999999999988887643   22  22 233467899999877764 35677


Q ss_pred             EEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecCCC
Q 010008          315 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGS  393 (520)
Q Consensus       315 I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~gt  393 (520)
                      ..++.-.    -..+++...-+-+....|...+-||.- ++..... + .+..+.++.....+-+.|.. .++.+.+. .
T Consensus       313 c~G~~~i----~~hQrLSg~~Y~fSAslPp~la~aa~~-ai~i~~~-~-p~~~~~L~~k~~~~H~~l~~~s~~~v~~~-~  384 (467)
T KOG1358|consen  313 CAGKSFI----ADHQRLSGSGYCFSASLPPYLAGAAIK-AILIEEW-N-PEIVQPLRAKVAKFHAALSSNSGFIVSGS-P  384 (467)
T ss_pred             eecceee----EeeeeccccceeeeccCchhhhhhHHH-HHHHHhh-C-cchhhhhhccccccchhhhcCCceEEecC-c
Confidence            7774310    012233222111112223333333322 2322211 1 22445555555566667766 35666543 3


Q ss_pred             CCeeEEEEecCCCCCHHH--------HHHHHhhcCeEEcCCC-CCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHH
Q 010008          394 DNHLVLVDLRPMGIDGAR--------VEKILDMASITLNKNS-VPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  464 (520)
Q Consensus       394 ~~~~~~vd~~~~g~~~~~--------~~~~L~~~gI~v~~~~-~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i  464 (520)
                      .+.+..+.+.....+.++        +.+.+.+ |+.+.... +-+......+-.|||+..    .+++++|++++++.|
T Consensus       385 ~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~-~~ll~~a~~~~~~e~~~~~pSiri~~~----a~~seeel~ra~~~i  459 (467)
T KOG1358|consen  385 ESPIIHLQLERSYGSREKEEKLLEEIVDKCIAE-GVLLTRAKYLEKLERCPIPPSIRICVS----AGMSEEELERAAELI  459 (467)
T ss_pred             CCceeeeeecccccchHHHHHHHHHHHHHHHhh-cceehhhhhhhhcccCCCCCcEEEEEe----CCCCHHHHHHHHHHH
Confidence            444444445443223222        2222233 66654322 212211223457999754    579999999999999


Q ss_pred             HHHHH
Q 010008          465 HEGVE  469 (520)
Q Consensus       465 ~~~l~  469 (520)
                      ++...
T Consensus       460 k~~~~  464 (467)
T KOG1358|consen  460 KEVAS  464 (467)
T ss_pred             HHHHH
Confidence            88654

>PRK06148 hypothetical protein; Provisional

Probab=98.98  E-value=6.4e-07  Score=104.42  Aligned_cols=322  Identities=17%  Similarity=0.183  Sum_probs=169.0

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-C-CC
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-L-KP  182 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al-l-~p  182 (520)
                      -.|.|.+|+...+.....    ..+|.  ++   ... ...+++++++.-..+   .....+|||+||.+++... . ..
T Consensus       639 ~hp~v~~Ai~~q~~~l~~----~~~~~--~~---~~~-~lAe~L~~~~p~~~~---~v~f~nSGsEA~e~AlklAr~~tG  705 (1013)
T PRK06148        639 AHPRVVAAAARQAARLNT----NTRYL--HD---AIV-AYAERLTATLPDGLT---VAFFVNSGSEANSLALRLARAHTG  705 (1013)
T ss_pred             CCHHHHHHHHHHHhhcCC----cCCcC--CH---HHH-HHHHHHHHhCCCCcC---EEEEeCCcHHHHHHHHHHHHHhcC
Confidence            468999998887754211    11221  12   112 233567776643222   1244689999999887643 2 22


Q ss_pred             CCEEEEcCCCCCcccccccccccccccccc------------ceEEEEEcccC-CCCCC-CC-------HHHHHHHhhh-
Q 010008          183 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTS------------IYFESMPYRLD-ESTGL-VD-------YDMLEKTAIL-  240 (520)
Q Consensus       183 GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g------------~~~~~v~~~~d-~~~~~-iD-------~d~le~~i~~-  240 (520)
                      ..+|+..+-.|.|.- .+      .+..++            ..+..++++.. ...+. .|       .+.+++.+.. 
T Consensus       706 r~~ii~~~~~YHG~t-~~------a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  778 (1013)
T PRK06148        706 QRDAIVLDHAYHGTT-TE------LIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAM  778 (1013)
T ss_pred             CCeEEEEcCCccCCC-cc------hhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhh
Confidence            357887775543321 11      011111            00111111100 00011 11       1345555531 


Q ss_pred             ----cCCcEEEEcC-CCCCC-CC----CHHHHHHHHHHhCCEEEEechhh-cccccccccC-CCCC-cccEEEeccCccc
Q 010008          241 ----FRPKLIIAGA-SAYPR-DF----DYPRMRQIADAVGALLMMDMAHI-SGLVAASVVA-DPFK-YCDVVTTTTHKSL  307 (520)
Q Consensus       241 ----~~pklIi~~~-s~~p~-~~----d~~~i~~ia~~~g~~li~D~Ah~-~gli~~~~~~-~p~~-~aDiv~~S~hK~l  307 (520)
                          .++.+||+.. ...++ ..    -+++++++|+++|+++|+|+.+. .|-....... .-+. ..|+++.+  |.+
T Consensus       779 ~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~g--K~l  856 (1013)
T PRK06148        779 AAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMG--KPI  856 (1013)
T ss_pred             hccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeeec--ccc
Confidence                2355677652 12222 22    28899999999999999999863 2222110000 0011 36898875  998


Q ss_pred             C-CCCceEEEeeCCCcchhhHHHhhcccC-CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-
Q 010008          308 R-GPRGGMIFFKKDPVLGVELESAINNAV-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-  384 (520)
Q Consensus       308 ~-GprgG~I~~~~~~~~~~~l~~~i~~~~-~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-  384 (520)
                      + |...|.+++++      ++.+.+.... +.++.++......++++ .|+.+.+++   ..+++.+..++|.+.|++. 
T Consensus       857 ggG~Plgav~~~~------ei~~~~~~g~~~~~Tf~gnpla~aaa~a-~L~~i~~e~---l~~~~~~~G~~l~~~L~~l~  926 (1013)
T PRK06148        857 GNGHPMGAVVTTR------EIADSFDNGMEYFNTFGGNPVSCAIGLA-VLDIIEDED---LQRNALEIGNYLLAGLRELQ  926 (1013)
T ss_pred             cCCcceEEEEEcH------HHHhhccCCCccccCCCCCHHHHHHHHH-HHHHHhhcc---HHHHHHHHHHHHHHHHHHHH
Confidence            5 44457788877      6766665432 33445554444444444 477665433   4555666677777777652 


Q ss_pred             -CCEEec--CCCCCeeEEEEecCCC----CC---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCH
Q 010008          385 -GYKLVS--GGSDNHLVLVDLRPMG----ID---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSE  454 (520)
Q Consensus       385 -G~~v~~--~gt~~~~~~vd~~~~g----~~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~  454 (520)
                       .+.++.  .|. ..+.-+.+....    -+   ...+.+.|.+.||.+...   |   + ....|||..| ++   +++
T Consensus       927 ~~~~~i~~VrG~-Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~---g---~-~~~vlr~~Pp-l~---it~  994 (1013)
T PRK06148        927 DRFDIIGDVRGM-GLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTE---G---P-HDNVLKIRPP-LI---FSR  994 (1013)
T ss_pred             HhCCCceEEeee-ceEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEecc---C---C-CCCEEEEeCC-cc---CCH
Confidence             222221  111 123334442110    11   234666777899998531   1   1 1367999755 44   569


Q ss_pred             HHHHHHHHHHHHHHHH
Q 010008          455 KEFVAIADFIHEGVEI  470 (520)
Q Consensus       455 ~d~~~la~~i~~~l~~  470 (520)
                      +|++++.+.+++++..
T Consensus       995 ~~id~~l~~l~~~l~~ 1010 (1013)
T PRK06148        995 ADADHLLEVLDDVLAA 1010 (1013)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998864

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=98.98  E-value=8.5e-08  Score=95.91  Aligned_cols=333  Identities=14%  Similarity=0.148  Sum_probs=186.8

Q ss_pred             cceEecCCCCChHHHHHHHhhhhhccCCCCCCC-CCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHH
Q 010008           95 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPG-KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  173 (520)
Q Consensus        95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~-~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~  173 (520)
                      ..++.+++.-+|+.|++.....+.+-..-|+.- .+-+.+.++...++ .+++.++++++++.+ +.+.+...+++.+..
T Consensus         6 ~~nFsaGPa~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~-~a~~~lreLl~iPd~-Y~VlflqGGat~qf~   83 (365)
T COG1932           6 VYNFSAGPAALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLE-EAEKDLRELLNIPDD-YKVLFLQGGATGQFA   83 (365)
T ss_pred             CCCCCCCcccCCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHH-HHHHHHHHHhCCCCC-ceEEEEcCccHHHHH
Confidence            356667777789999998887776554333320 11122334444444 567899999999865 334454555567888


Q ss_pred             HHHHhhCCCCCE--EEEcCCCCCccccccccccccccccccceEEEEEccc-CC-CCCCCCHHHHHHHhhhcCCcEEEEc
Q 010008          174 EVYTAILKPHDR--IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DE-STGLVDYDMLEKTAILFRPKLIIAG  249 (520)
Q Consensus       174 ~~l~all~pGD~--Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~-d~-~~~~iD~d~le~~i~~~~pklIi~~  249 (520)
                      ++.+.|+..+..  |.......   .+..      -+...+....+..... .. -...+|++...  +.+ +...|.++
T Consensus        84 ~~p~nLl~~~~~~yv~~g~Ws~---~a~~------eA~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~-~~ayv~~~  151 (365)
T COG1932          84 MAPMNLLGKRGTDYVDTGAWSE---FAIK------EAKKVGKQPKLIDARIEEAGYGSIPDLSKWD--FSD-NDAYVHFC  151 (365)
T ss_pred             HHHHhhhcccCceeEeeeehhH---hHHH------HHHHhcccccccccceeccCccCCCChhhcc--cCC-CccEEEEe
Confidence            888999866543  54332211   1001      0111111001100000 00 11244555432  212 22224444


Q ss_pred             CCCC--CCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhh
Q 010008          250 ASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVE  326 (520)
Q Consensus       250 ~s~~--p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~  326 (520)
                      ....  +..++  ..-.+..  +.++++|++  ++....   +.++..-|++.++.+|.+ ||-| ++++.++      +
T Consensus       152 ~NeTi~Gv~v~--~~p~~~~--~~~~v~D~S--S~ilsr---~iDvsk~dviyagaQKnl-GpaGltvvIvr~------~  215 (365)
T COG1932         152 WNETISGVEVP--ELPDIGS--DGLLVADAS--SAILSR---PIDVSKYDVIYAGAQKNL-GPAGLTVVIVRP------D  215 (365)
T ss_pred             cCCcccceEcc--CCCCCCC--CceEEEecc--cHHhcC---CCChhHcceEEEehhhcc-CccceEEEEEcH------H
Confidence            3222  22222  1111111  289999986  333221   223335789999999998 5666 8888888      5


Q ss_pred             HHHhhcccCCC------------CCCCCChHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHHHHHCCCEE--ecC
Q 010008          327 LESAINNAVFP------------GLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASRLVELGYKL--VSG  391 (520)
Q Consensus       327 l~~~i~~~~~p------------~~~g~p~~~~iaala~al~~~~~~~-~~~~~~~i~~na~~l~~~L~~~G~~v--~~~  391 (520)
                      +..++.....|            .+..+|.+..+.-+...|+.+...+ .+...++-.++++.|.+.+.+.+|-.  +.+
T Consensus       216 ~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s~fy~~~v~~  295 (365)
T COG1932         216 LLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSDFYRNLVAK  295 (365)
T ss_pred             HHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCccccccch
Confidence            66655443122            1246777777777777788776544 58888999999999999998876532  222


Q ss_pred             CCCCee-EEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          392 GSDNHL-VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       392 gt~~~~-~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ...+.+ +.+++....++ +.+...++++|....++    +.   ..+|+|++.-  +  .+..++++.++++++...+
T Consensus       296 ~~RS~mnV~f~~~~~~ld-~~fv~eae~~gl~~lkG----hr---~vgGmRasiy--n--A~~~e~veaL~~fm~~f~~  362 (365)
T COG1932         296 ANRSRMNVTFTLVDAELD-KGFVAEAEAAGLIYLKG----HR---SVGGLRASIY--N--AVPLEDVEALTDFMDWFEE  362 (365)
T ss_pred             hhccceeEEEEcCcHHHH-HHHHHHHHHcCCceecc----cc---CCCceeeeee--c--CCCHHHHHHHHHHHHHHHH
Confidence            222222 23444433333 33445566777776443    22   3578999863  2  2668999999999988764

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=98.94  E-value=1.2e-06  Score=93.89  Aligned_cols=331  Identities=14%  Similarity=0.155  Sum_probs=165.3

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCC--CCceeeecCChHHHHHHHHHhh-C
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDEN--KWGVNVQPLSGSPANFEVYTAI-L  180 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~--~~~~~V~~~sGs~A~~~~l~al-l  180 (520)
                      .-.|.|.+|+...+.+.......  . +. ++..   .+++ +++.+++.-+..  .. +.....|||+|+.+++... .
T Consensus        79 h~~p~v~~Ai~~ql~~~~~~~~~--~-~~-~~~~---~~la-~~L~~~~p~~~~~~~~-v~f~~~SGSEAve~AlklAr~  149 (464)
T PRK06938         79 HNHPVVIEAIQQVLADELPLHTL--D-LT-TPVK---DQFV-QDLFASLPEAFAREAK-IQFCGPTGTDAVEAALKLVKT  149 (464)
T ss_pred             CCCHHHHHHHHHHHHhhhccccc--c-cC-CHHH---HHHH-HHHHHhCcccccccce-EEEeCCCcHHHHHHHHHHHHH
Confidence            45789999998887643211110  1 11 2211   1222 445555432110  01 2222369999999887643 2


Q ss_pred             CCC-CEEEEcCCCCCcccccccccccccc----ccccc--eEEEEEcccCCC-C--------CCCCHHHHHHHhhhc---
Q 010008          181 KPH-DRIMGLDLPHGGHLSHGFMTPKRRV----SGTSI--YFESMPYRLDES-T--------GLVDYDMLEKTAILF---  241 (520)
Q Consensus       181 ~pG-D~Vl~~~~~~~ghls~g~~~~~~~v----~~~g~--~~~~v~~~~d~~-~--------~~iD~d~le~~i~~~---  241 (520)
                      -+| .+|+...-.|.|.- .+........    .+.+.  .+..++++.... .        ...+.+.+++.+...   
T Consensus       150 ~tgr~~ii~~~~~yHG~t-~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  228 (464)
T PRK06938        150 ATGRSTVLSFQGGYHGMS-QGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESG  228 (464)
T ss_pred             hhCCCeEEEECCccCCcc-HHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccC
Confidence            233 67887765543321 1100000000    00000  112233321100 0        012356777777542   


Q ss_pred             --CCcEEEEcCC-CCCC-----CCCHHHHHHHHHHhCCEEEEechhhcccccccc-cC-CCCC-cccEEEeccCcccCC-
Q 010008          242 --RPKLIIAGAS-AYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASV-VA-DPFK-YCDVVTTTTHKSLRG-  309 (520)
Q Consensus       242 --~pklIi~~~s-~~p~-----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~-~p~~-~aDiv~~S~hK~l~G-  309 (520)
                        +.-+||+..- ..++     .--+++++++|+++|+++|+|+.+. |+--.|. .. .-+. -.|+++++  |.+.| 
T Consensus       229 ~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~t-GfGRtG~~~a~e~~gv~PDiv~~g--KglggG  305 (464)
T PRK06938        229 VVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQS-GFGRTGKMFAFEHAGIIPDVVVLS--KAIGGS  305 (464)
T ss_pred             CCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCcHHHHHHhcCCCCCEEEee--ccccCC
Confidence              3456676521 1222     2238899999999999999999853 4311111 00 0011 36999886  99854 


Q ss_pred             CCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCE
Q 010008          310 PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYK  387 (520)
Q Consensus       310 prgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~  387 (520)
                      -..|.+++++      ++ +.+......++.++......++++ .|+.+.++   +..+++.+..++|.+.|++.  .+.
T Consensus       306 ~PlsAv~~~~------~~-~~~~~~~~~~T~~gnpla~Aaa~a-~L~~l~~~---~l~~~~~~~G~~l~~~L~~l~~~~~  374 (464)
T PRK06938        306 LPLAVVVYRE------WL-DTWQPGAHAGTFRGNQMAMAAGSA-TLRYIKEH---RLAEHAAAMGERLREHLRQLQRDYP  374 (464)
T ss_pred             CceEEEeehh------Hh-hccCCCCCCCCCCcCHHHHHHHHH-HHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            3347777776      43 333322222334443443344443 46655443   34455666666677766552  222


Q ss_pred             EecC--CCCCeeEEEEecCC-CC---------C---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCC
Q 010008          388 LVSG--GSDNHLVLVDLRPM-GI---------D---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGF  452 (520)
Q Consensus       388 v~~~--gt~~~~~~vd~~~~-g~---------~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~  452 (520)
                      ++..  |. ..+.-+.+... +.         +   ...+...|.+.||.+...    .  . ....||+..| ++   +
T Consensus       375 ~i~~VrG~-Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----g--~-~~~~l~~~Pp-l~---i  442 (464)
T PRK06938        375 QLGDVRGR-GLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLILELG----G--R-HGSVVRFLPP-LI---I  442 (464)
T ss_pred             Ceeeeecc-ceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHCCeEEeec----C--C-CCCEEEEECC-Cc---c
Confidence            2221  21 22333444211 10         1   133556677899998431    1  0 1256899644 44   6


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q 010008          453 SEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       453 ~~~d~~~la~~i~~~l~~  470 (520)
                      +++|++++.+.+++++..
T Consensus       443 t~~eid~~~~~l~~~l~~  460 (464)
T PRK06938        443 TAEQIDEVAEIFAEAVAA  460 (464)
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            799999999999999874

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=98.94  E-value=5.6e-06  Score=88.70  Aligned_cols=187  Identities=18%  Similarity=0.263  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHhCCEEEEechhhcccccccc-cC-CCCC-cccEEEeccCcccCC-CCceEEEeeCCCcchhhHHHhhccc
Q 010008          259 YPRMRQIADAVGALLMMDMAHISGLVAASV-VA-DPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKDPVLGVELESAINNA  334 (520)
Q Consensus       259 ~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~-~p~~-~aDiv~~S~hK~l~G-prgG~I~~~~~~~~~~~l~~~i~~~  334 (520)
                      +++++++|+++|+++|.|+.+. |+--.|. .. .-+. ..|+++++  |.++| -..|.++.++      ++ +.+...
T Consensus       248 l~~lr~lc~~~g~LlI~DEV~t-GfGRtG~~~a~~~~gv~PDivt~g--K~l~gG~Pi~av~~~~------~~-~~~~~~  317 (459)
T PRK06931        248 LQKIREVTQKHGILLIVDEVQA-GFARTGKMFAFEHAGIEPDIIVMS--KAVGGGLPLAVLGIKK------EF-DAWQPG  317 (459)
T ss_pred             HHHHHHHHHHcCCEEEEecchh-cCCcCchHHHhhhcCCCCCEEEec--ccccCCcceeeeeeHH------HH-hhccCC
Confidence            8899999999999999999853 4321111 00 0011 36898886  99854 3346666665      43 333322


Q ss_pred             CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCEEec--CCCCCeeEEEEecCC-C---
Q 010008          335 VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVS--GGSDNHLVLVDLRPM-G---  406 (520)
Q Consensus       335 ~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~v~~--~gt~~~~~~vd~~~~-g---  406 (520)
                      ...++.++......+|++ .|+.+.++++   .+++.+..++|.+.|++.  .+.++.  .|. ..+.-+.+... .   
T Consensus       318 ~~~~T~~gnpla~aaala-~L~~l~~~~l---~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~-Glm~giel~~~~~~~~  392 (459)
T PRK06931        318 GHTGTFRGNQLAMATGLT-TLKILKEENL---AQNAAERGEWLKAQLAELQKRYPCIGNVRGR-GLMIGIEIVDERQPAD  392 (459)
T ss_pred             CCCCCCCCCHHHHHHHHH-HHHHHHhCCH---HHHHHHHHHHHHHHHHHHHHhCCCeEeEecC-ceEEEEEEccCccccc
Confidence            222333443333333333 5666554443   445555566666666542  122222  121 12233344211 0   


Q ss_pred             ------CC---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          407 ------ID---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       407 ------~~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                            .+   ...+.+.|.+.||.+...    .   .....+|+..| ++   ++++|++++.+.+++++...
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~----~---~~~~~l~~~Pp-l~---it~~eid~~~~~l~~~l~~~  455 (459)
T PRK06931        393 AMGSYPADGELAAAIQKACFENGLLLERG----G---RNGNVVRLLPP-LL---ITQAECEEFIDRFEQALLAA  455 (459)
T ss_pred             ccccCCccHHHHHHHHHHHHHCCcEEeec----C---CCCCEEEEECC-CC---cCHHHHHHHHHHHHHHHHHH
Confidence                  01   134556677899998431    1   12356998655 43   57999999999999998753

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.93  E-value=2.1e-06  Score=92.15  Aligned_cols=213  Identities=15%  Similarity=0.147  Sum_probs=120.9

Q ss_pred             HHHHHHHhhhc--CCcEEEEcC--CCCCC-----CCCHHHHHHHHHHhCCEEEEechhhcccccccc-cC-CCCC-cccE
Q 010008          231 YDMLEKTAILF--RPKLIIAGA--SAYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASV-VA-DPFK-YCDV  298 (520)
Q Consensus       231 ~d~le~~i~~~--~pklIi~~~--s~~p~-----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~-~p~~-~aDi  298 (520)
                      ++.+++.+..+  +..+||+..  -..++     ..-+++++++|+++|+++|+|+.+. |+--.|. .. ..+. ..|+
T Consensus       201 l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~T-GfGRtG~~~a~~~~gv~PDi  279 (466)
T PRK07030        201 FAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAV-GFGRTGTMFACEQAGIRPDF  279 (466)
T ss_pred             HHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhh-CcCccccchHHHhcCCCCCE
Confidence            45667777532  345666654  12222     1238899999999999999999853 3311111 00 0111 3699


Q ss_pred             EEeccCcccCCC--CceEEEeeCCCcchhhHHHhhcc------c-CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHH
Q 010008          299 VTTTTHKSLRGP--RGGMIFFKKDPVLGVELESAINN------A-VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK  369 (520)
Q Consensus       299 v~~S~hK~l~Gp--rgG~I~~~~~~~~~~~l~~~i~~------~-~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~  369 (520)
                      ++++  |.|.|.  ..|.+++++      ++.+.+..      . ...++.++......+++ +.|+.+.+++   ..++
T Consensus       280 v~~g--Kgl~gG~~Pi~av~~~~------ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~-a~L~~i~~~~---l~~~  347 (466)
T PRK07030        280 LCLS--KALTGGYLPLAAVLTTD------TVYQAFYDDYPTLRAFLHSHSYTGNPLACAAAL-ATLDIFEQDN---VIEN  347 (466)
T ss_pred             Eeee--hhccCCcccceEEEecH------HHHHHHhcccccccccccCCCCCCCHHHHHHHH-HHHHHHHhcC---HHHH
Confidence            9886  998653  467788877      56555432      1 11223344333333333 3577665443   3455


Q ss_pred             HHHHHHHHHHHHHHC-CCEEecC--CCCCeeEEEEecCCC-------CC---HHHHHHHHhhcCeEEcCCCCCCCCCCCC
Q 010008          370 VVSNCRALASRLVEL-GYKLVSG--GSDNHLVLVDLRPMG-------ID---GARVEKILDMASITLNKNSVPGDKSALV  436 (520)
Q Consensus       370 i~~na~~l~~~L~~~-G~~v~~~--gt~~~~~~vd~~~~g-------~~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~  436 (520)
                      ..+..++|.+.|++. ....+..  |. ..+.-+.+....       .+   ...+.+.+.+.||.+...          
T Consensus       348 ~~~~G~~l~~~L~~l~~~~~v~~vrG~-Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~----------  416 (466)
T PRK07030        348 NRALARRMAEATAHLADHPHVAEVRQT-GMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPL----------  416 (466)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEeEec-eeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEec----------
Confidence            556666777777552 2222221  11 123334442211       01   134666777899998421          


Q ss_pred             CCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          437 PGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       437 ~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      ...+|+..| ++   ++++|++++.+.++++++..
T Consensus       417 g~~i~~~Pp-l~---it~~eid~~~~~l~~al~~~  447 (466)
T PRK07030        417 GSVVYFLPP-YV---ITPEQIDFLAEVASEGIDIA  447 (466)
T ss_pred             CCEEEEECC-cc---CCHHHHHHHHHHHHHHHHHH
Confidence            246898544 44   67999999999999999764

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.92  E-value=1.9e-06  Score=92.38  Aligned_cols=213  Identities=15%  Similarity=0.105  Sum_probs=114.6

Q ss_pred             HHHHHHHhhh--cCCcEEEEcC--CCCCC-----CCCHHHHHHHHHHhCCEEEEechhhcccccccc-cC-CCCC-cccE
Q 010008          231 YDMLEKTAIL--FRPKLIIAGA--SAYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASV-VA-DPFK-YCDV  298 (520)
Q Consensus       231 ~d~le~~i~~--~~pklIi~~~--s~~p~-----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~-~p~~-~aDi  298 (520)
                      ++.+++.+..  .+.-+||+..  -..++     .--+++++++|+++|+++|.|+.+. |+--.|. .. .-+. ..|+
T Consensus       223 ~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~T-GfGRtG~~~a~e~~gv~PDi  301 (472)
T PRK08742        223 ADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIAT-GFGRTGTLFACEQAGVMPDL  301 (472)
T ss_pred             HHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCCCccchHHHhcCCCCCE
Confidence            5667777653  2455666654  12222     2238899999999999999999854 3321121 00 0011 3699


Q ss_pred             EEeccCcccCCC--CceEEEeeCCCcchhhHHHhhccc-----CC-CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHH
Q 010008          299 VTTTTHKSLRGP--RGGMIFFKKDPVLGVELESAINNA-----VF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV  370 (520)
Q Consensus       299 v~~S~hK~l~Gp--rgG~I~~~~~~~~~~~l~~~i~~~-----~~-p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i  370 (520)
                      ++++  |.|.|.  ..|.+++++      ++.+.+...     .. ..+.++.... .++....|+.+.++++   .++.
T Consensus       302 v~~g--Kgl~gG~~Plaav~~~~------ei~~~~~~~~~~~~~~h~~T~~gnpl~-~Aaa~a~L~~i~~~~l---~~~~  369 (472)
T PRK08742        302 LCLS--KGLTGGFLPLSAVLATQ------QLYDAFLDDSRERAFLHSHSYTGNPLA-CAAALATLDIFADDDV---IARN  369 (472)
T ss_pred             EEEc--ccccCCCCCcceeeccH------HHHHHhhccCccCccCcCCCCCccHHH-HHHHHHHHHHHHHCCH---HHHH
Confidence            9886  999543  456777776      555544321     11 1223333333 3333335666655443   3333


Q ss_pred             HHHHHHHHHHHHH-CCCEEecC--CCCCeeEEEEecCCCC-----C-----HHHHHHHHhhcCeEEcCCCCCCCCCCCCC
Q 010008          371 VSNCRALASRLVE-LGYKLVSG--GSDNHLVLVDLRPMGI-----D-----GARVEKILDMASITLNKNSVPGDKSALVP  437 (520)
Q Consensus       371 ~~na~~l~~~L~~-~G~~v~~~--gt~~~~~~vd~~~~g~-----~-----~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~  437 (520)
                      .+..++|.+.++. ..+.++..  |. ..+.-+.+....-     +     ...+.+.+.+.||.+...          .
T Consensus       370 ~~~g~~l~~~~~~~~~~~~i~dvRG~-Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----------g  438 (472)
T PRK08742        370 QPTAARMTQLAAQIGEHPHVADVRQA-GMVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPL----------G  438 (472)
T ss_pred             HHHHHHHHHHHHHHhcCCCeeeEecc-ceEEEEEeccCccccccCCchhHHHHHHHHHHHHCCeEEEec----------C
Confidence            3334444433322 11222221  11 1233334421100     1     134556677899998421          2


Q ss_pred             CEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          438 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       438 ~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      +.||+..| ++   ++++|++++.+.++++++..
T Consensus       439 ~vi~~~Pp-L~---it~~ei~~~~~~l~~~l~~~  468 (472)
T PRK08742        439 DVLYWMPP-YC---VDEAQLALLADTTRHAIDEA  468 (472)
T ss_pred             CEEEEECC-CC---CCHHHHHHHHHHHHHHHHHH
Confidence            47999644 55   57999999999999998753

>PRK06917 hypothetical protein; Provisional

Probab=98.92  E-value=2e-06  Score=91.90  Aligned_cols=330  Identities=15%  Similarity=0.127  Sum_probs=170.4

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC---
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---  180 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all---  180 (520)
                      .-.|.|.+|+...+... ...++. .| . ++   ... ...+++.+++.-..+ +  ....+|||+|+.+++....   
T Consensus        47 h~hp~v~~Ai~~ql~~~-~~~~~~-~~-~-~~---~~~-~lae~L~~~~p~~~~-~--v~f~~sGsEAve~AlklAr~~~  115 (447)
T PRK06917         47 HGVKEIADAIKEQAEEV-SFVYRS-QF-T-SE---PAE-KLAKKLSDLSPGDLN-W--SFFVNSGSEANETAMKIAIQHF  115 (447)
T ss_pred             CCCHHHHHHHHHHHhhC-cCcccc-cc-C-CH---HHH-HHHHHHHHhCCCCCC-E--EEEeCChHHHHHHHHHHHHHHH
Confidence            45788888888777642 111111 11 1 12   112 233567777643222 2  2446899999998887441   


Q ss_pred             ----CCC-CEEEEcCCCCCccccccccccccccccccc------------eEEEEEcccCC-----CC-C---CCCHHHH
Q 010008          181 ----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDE-----ST-G---LVDYDML  234 (520)
Q Consensus       181 ----~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~------------~~~~v~~~~d~-----~~-~---~iD~d~l  234 (520)
                          .+| .+|+...-.|.|.- .+      .+...+.            .+..++++...     ++ .   .-|.+.+
T Consensus       116 ~~rg~t~r~~ii~~~~~yHG~t-~~------als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l  188 (447)
T PRK06917        116 QERGIQGKHKILSRWMSYHGIT-MG------ALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATEL  188 (447)
T ss_pred             HhcCCCCCCEEEEECCCcCCcc-HH------HHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHH
Confidence                133 67888775543321 01      0111110            00111111100     00 0   0134567


Q ss_pred             HHHhhhc---CCcEEEEcCC-C-CCC-----CCCHHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEe
Q 010008          235 EKTAILF---RPKLIIAGAS-A-YPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTT  301 (520)
Q Consensus       235 e~~i~~~---~pklIi~~~s-~-~p~-----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~  301 (520)
                      ++.+..+   +.-+||+..- . .++     ..-+++++++|+++|+++|+|+.+. |+--.+.. . .-+. ..|++++
T Consensus       189 e~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~t-GfGRtG~~~a~~~~gv~PDi~~~  267 (447)
T PRK06917        189 ETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMT-GLGRTGAMFAMEHWGVEPDIMTL  267 (447)
T ss_pred             HHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhh-CcCcccchhhHHhcCCCCCEEEe
Confidence            7777643   3556776632 1 121     2237899999999999999999974 54212210 0 0011 3688776


Q ss_pred             ccCcccCCC--CceEEEeeCCCcchhhHHHhhccc---CCC-CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q 010008          302 TTHKSLRGP--RGGMIFFKKDPVLGVELESAINNA---VFP-GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCR  375 (520)
Q Consensus       302 S~hK~l~Gp--rgG~I~~~~~~~~~~~l~~~i~~~---~~p-~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~  375 (520)
                      +  |.+.|.  ..|.+++++      ++.+.+...   .+. ++.++.... +++....|+.+.+++   ..+++.+..+
T Consensus       268 g--K~l~~G~~Pi~a~~~~~------~i~~~~~~~~~~~~~~~T~~gnpl~-~aaa~a~l~~l~~~~---l~~~~~~~g~  335 (447)
T PRK06917        268 G--KGLGAGYTPIAATVVSD------RVMEPILRGSRSIMSGHTLSANPLS-AATALAVLEYMEKHN---LPEKAAEKGE  335 (447)
T ss_pred             e--ehhccCCcceEEEEEcH------HHHHHHhccCcccccccCCCCCHHH-HHHHHHHHHHHHHCC---HHHHHHHHHH
Confidence            5  999653  467777777      566555321   122 233333333 333333566654433   4556666677


Q ss_pred             HHHHHHHHC--CCEEec--CCCCCeeEEEEecCC-----CC--C---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEE
Q 010008          376 ALASRLVEL--GYKLVS--GGSDNHLVLVDLRPM-----GI--D---GARVEKILDMASITLNKNSVPGDKSALVPGGIR  441 (520)
Q Consensus       376 ~l~~~L~~~--G~~v~~--~gt~~~~~~vd~~~~-----g~--~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giR  441 (520)
                      .|.+.|++.  .+.++.  .|. ..+..+.+...     ..  +   ...+.+.|.+.||.+....  ..........+|
T Consensus       336 ~l~~~L~~l~~~~~~i~~vrG~-Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~--~~~~g~~~~~i~  412 (447)
T PRK06917        336 YLIKGLQKVQQQSTIIGDVRGK-GLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAV--AGQDGKEGDAVI  412 (447)
T ss_pred             HHHHHHHHHHhcCCCEEEEeec-ceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEecc--cccCCCCCCEEE
Confidence            777777652  233222  121 12333444211     00  1   2346667788999984310  000001135789


Q ss_pred             EccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          442 IGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       442 ig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      +..| ++   ++++|++++++.+++++...
T Consensus       413 l~Pp-l~---it~~eid~~~~~l~~~l~~~  438 (447)
T PRK06917        413 IAPP-MT---ITYSELDELLSIFAKSVEEM  438 (447)
T ss_pred             EECC-Cc---CCHHHHHHHHHHHHHHHHHH
Confidence            9755 33   56999999999999999754

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=98.90  E-value=7e-07  Score=95.27  Aligned_cols=209  Identities=14%  Similarity=0.152  Sum_probs=113.1

Q ss_pred             CHHHHHHHhhhc--CCcEEEEcC--CCCCCCCC----HHHHHHHHHHhCCEEEEechhhccccccccc-C---CCCC-cc
Q 010008          230 DYDMLEKTAILF--RPKLIIAGA--SAYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A---DPFK-YC  296 (520)
Q Consensus       230 D~d~le~~i~~~--~pklIi~~~--s~~p~~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~---~p~~-~a  296 (520)
                      +++.+++++..+  +..+||+..  .+.+...+    +++++++|+++|+++|+|++| .|+-..|.. .   ..+. ..
T Consensus       237 ~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~-tGfGrtG~~fa~e~~gv~~~P  315 (464)
T TIGR00699       237 CLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQ-TGVGATGKFWAHEHWNLDDPP  315 (464)
T ss_pred             HHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeee-eCCCCCcchhHHHhcCCCCCC
Confidence            356677777543  345666652  22222334    899999999999999999997 554222210 0   1111 26


Q ss_pred             cEEEeccCcccCCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q 010008          297 DVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA  376 (520)
Q Consensus       297 Div~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~  376 (520)
                      |+++++  |.+.|  +|+++.++      .+. ........++.++ +....++..++|+.+.+++   ..+++.+..++
T Consensus       316 Di~t~g--K~lg~--gG~~~~~~------~~~-~~~~~~~~~T~~g-np~~~aaa~a~L~~l~~~~---l~~~~~~~g~~  380 (464)
T TIGR00699       316 DMVTFS--KKFQT--AGYFFHDP------AFR-PNKPYRQFNTWMG-DPSRALILREIIQEIKRKD---LLENVAHVGDY  380 (464)
T ss_pred             CEEEeh--hhhcc--CCccccch------hcc-CCCCcccccCCCC-CHHHHHHHHHHHHHHHhcC---HHHHHHHHHHH
Confidence            887765  98842  24444332      221 1011111122233 2323333333567665443   34455555667


Q ss_pred             HHHHHHHC--CCE-EecC--CC-CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCcccc
Q 010008          377 LASRLVEL--GYK-LVSG--GS-DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTR  450 (520)
Q Consensus       377 l~~~L~~~--G~~-v~~~--gt-~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~  450 (520)
                      |.+.|++.  .+. ++..  +. ...++-+.+.... ....+.+.|.+.||.+...         +...|||..| ++  
T Consensus       381 l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~~~-~~~~i~~~~~~~Gvl~~~~---------g~~~ir~~Pp-l~--  447 (464)
T TIGR00699       381 LYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDEA-KRDKLLKKARNNGVNIGGC---------GVKAIRLRPM-LV--  447 (464)
T ss_pred             HHHHHHHHHHhCCCceeeecccCeEEEEEEecCCHH-HHHHHHHHHHHCCcEEecC---------CCCeEEEeCC-CC--
Confidence            77777652  233 2221  11 2233334543111 1345667777889998531         2357999755 33  


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 010008          451 GFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       451 g~~~~d~~~la~~i~~~l  468 (520)
                       ++++|++++.++|.+++
T Consensus       448 -it~~eid~~~~~l~~~~  464 (464)
T TIGR00699       448 -FQKHHADIFLEIISKII  464 (464)
T ss_pred             -CCHHHHHHHHHHHHHhC
Confidence             57999999999998753

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=98.90  E-value=2.9e-08  Score=97.77  Aligned_cols=353  Identities=18%  Similarity=0.191  Sum_probs=205.6

Q ss_pred             hhccccChHHHHHHHHHHHHhh--ccceEecC----C---CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHH
Q 010008           72 YSLGEADPEVCEIITKEKERQF--KSLELIAS----E---NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELET  142 (520)
Q Consensus        72 ~~l~~~d~~~~~~~~~e~~~~~--~~i~Lias----e---n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~  142 (520)
                      ..+...+|+..==+.++.++..  ..|||.++    +   .++-+.|++|-.........--|      ..-..+.++..
T Consensus        29 s~V~maPpDpILGVTeAfk~D~n~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~~ldKEY------lpI~Gl~eF~k  102 (427)
T KOG1411|consen   29 SHVEMAPPDPILGVTEAFKKDPNPKKINLGVGAYRDDNGKPYVLPSVRKAEQQLASLSLDKEY------LPITGLAEFNK  102 (427)
T ss_pred             hcCCCCCCCCcccHHHHHhcCCCcceeeecccceecCCCCeeeeHHHHHHHHHHhhhcccchh------ccccchHHHHH
Confidence            4455556653222333344443  44777753    2   35778999987655541111111      11112345554


Q ss_pred             HHHHHHHHHcCCCCC----CCceeeecCChHHHH--HHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEE
Q 010008          143 LCQKRALAAFNLDEN----KWGVNVQPLSGSPAN--FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE  216 (520)
Q Consensus       143 ~a~~~~~~lfg~~~~----~~~~~V~~~sGs~A~--~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~  216 (520)
                      ++.+   =+||.+.+    .-.+.||..||+.|+  .+-+.+..-|+..|.+++|+.|.|..        ....+|...+
T Consensus       103 ~sak---La~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~--------if~~ag~~~~  171 (427)
T KOG1411|consen  103 LSAK---LALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKN--------IFKDAGLPVK  171 (427)
T ss_pred             HHHH---HhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCcccccCc--------cccccCccee
Confidence            4332   35676532    112578999998554  34566666789999999999988732        2234555445


Q ss_pred             EEEcccCCCCCCCCHHHHHHHhhhcCCcEE-EEc-CCCCCC-----CCCHHHHHHHHHHhCCEEEEechhhccccccccc
Q 010008          217 SMPYRLDESTGLVDYDMLEKTAILFRPKLI-IAG-ASAYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV  289 (520)
Q Consensus       217 ~v~~~~d~~~~~iD~d~le~~i~~~~pklI-i~~-~s~~p~-----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~  289 (520)
                      ...| .++++..+|++.+.+.+.+.-..-+ ++- .-+||+     ...+++|+++.++.+.+-+.|+| |-|+-.+++.
T Consensus       172 ~yrY-yd~~t~gld~~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmA-YQGfaSG~~d  249 (427)
T KOG1411|consen  172 FYRY-YDPKTRGLDFKGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMA-YQGFASGDLD  249 (427)
T ss_pred             eeee-ccccccccchHHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhh-hcccccCCch
Confidence            5554 3567889999998777766333333 332 344565     33589999999999999999998 6665544432


Q ss_pred             CCC--C-----Cccc-EEEeccCccc--CCCCceEE--EeeCCCcchhhHHHhh----cccCCCCCCCCChHH--HHHHH
Q 010008          290 ADP--F-----KYCD-VVTTTTHKSL--RGPRGGMI--FFKKDPVLGVELESAI----NNAVFPGLQGGPHNH--TIGGL  351 (520)
Q Consensus       290 ~~p--~-----~~aD-iv~~S~hK~l--~GprgG~I--~~~~~~~~~~~l~~~i----~~~~~p~~~g~p~~~--~iaal  351 (520)
                      ...  +     .+-+ +++-|+-|.|  .|-|.|.+  +|++.     +...++    ...+.| ++.+|..|  .|++-
T Consensus       250 ~DA~avR~F~~~g~~~~laQSyAKNMGLYgERvGa~svvc~~a-----d~A~rV~SQlk~liRp-mYSnPP~hGArIv~~  323 (427)
T KOG1411|consen  250 KDAQAVRLFVEDGHEILLAQSYAKNMGLYGERVGALSVVCKDA-----DEAKRVESQLKILIRP-MYSNPPLHGARIVAT  323 (427)
T ss_pred             hhHHHHHHHHHcCCceEeehhhhhhcchhhhccceeEEEecCH-----HHHHHHHHHHHHHhcc-cccCCCccchhhhhh
Confidence            211  1     1334 5667999986  67777654  55553     333333    233333 34445444  34332


Q ss_pred             HHH---HHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCC
Q 010008          352 AVC---LKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSV  428 (520)
Q Consensus       352 a~a---l~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~  428 (520)
                      ...   |+.--..+.+.+..++...++.|.+.|...|-...-..--..+-.+.+  .|++.++++.+-.+..|...+.  
T Consensus       324 Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L~~~gs~~~W~hI~~QIGMF~f--Tgl~peQv~~l~ke~~iYmT~d--  399 (427)
T KOG1411|consen  324 ILSDPDLKNQWLGEVKGMADRIISMRQQLFDALEKEGSPGNWSHITKQIGMFCF--TGLNPEQVDWLTKEYHIYLTKD--  399 (427)
T ss_pred             ccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHhhcCCCCccHHHHHHhhheeee--cCCCHHHHHHHHhhheeeeccC--
Confidence            211   211101234667788888888899998876543200000011222323  4778899999889999988432  


Q ss_pred             CCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          429 PGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       429 Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                                 =|||...++     ...+.++|++|+.+.+
T Consensus       400 -----------GRiS~aG~s-----s~nV~yLa~aih~vtk  424 (427)
T KOG1411|consen  400 -----------GRISMAGLS-----SSNVPYLADAIHAVTK  424 (427)
T ss_pred             -----------ceEeecccc-----ccCCcccchhhHhHhc
Confidence                       278776555     4788999999987754

>PRK07036 hypothetical protein; Provisional

Probab=98.88  E-value=2.3e-06  Score=91.85  Aligned_cols=212  Identities=17%  Similarity=0.151  Sum_probs=118.0

Q ss_pred             HHHHHHhhh---cCCcEEEEcCC-CCCC-CCC----HHHHHHHHHHhCCEEEEechhhcccccccc-c--CCCCC-cccE
Q 010008          232 DMLEKTAIL---FRPKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASV-V--ADPFK-YCDV  298 (520)
Q Consensus       232 d~le~~i~~---~~pklIi~~~s-~~p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~--~~p~~-~aDi  298 (520)
                      +.+++.+..   .+..+||+... ...+ ..+    +++++++|++||+++|+|+.+. |+--.|. .  ..-+. ..|+
T Consensus       207 ~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~t-GfGRtG~~~~~~~~~gv~PDi  285 (466)
T PRK07036        207 DEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVT-GFGRLGHFFASEAVFGIQPDI  285 (466)
T ss_pred             HHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechh-CCCcCchhhhhhhhcCCCCCE
Confidence            345555532   23556777532 2222 233    8999999999999999999863 3311110 0  00111 3688


Q ss_pred             EEeccCcccCCC--CceEEEeeCCCcchhhHHHhhccc------CCC-CCCCCChHHHHHHHHHHHHHhcCchhHHHHHH
Q 010008          299 VTTTTHKSLRGP--RGGMIFFKKDPVLGVELESAINNA------VFP-GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK  369 (520)
Q Consensus       299 v~~S~hK~l~Gp--rgG~I~~~~~~~~~~~l~~~i~~~------~~p-~~~g~p~~~~iaala~al~~~~~~~~~~~~~~  369 (520)
                      ++++  |.++|.  ..|.+++++      ++.+.+...      ... ++.++.... +++....|+.+.+++   ..++
T Consensus       286 vt~g--K~l~gG~~Pi~av~~~~------~i~~~~~~~~~~~~~~~~~~T~~gnpl~-~aaa~a~Le~i~~~~---l~~~  353 (466)
T PRK07036        286 ITFA--KGLTSGYQPLGAVIISE------RLLDVISGPNAKGNVFTHGFTYSGHPVA-CAAALKNIEIMEREG---LCEH  353 (466)
T ss_pred             EEEc--cccccCccccEEEEEcH------HHHHHHhcccCcCcccccCCCCCCCHHH-HHHHHHHHHHHHhCC---HHHH
Confidence            8775  999653  457777777      566555321      111 133443333 333333566665433   4556


Q ss_pred             HHHHHHHHHHHHHHC-CCEEec--CCCCCeeEEEEecCCC-------CC---HHHHHHHHhhcCeEEcCCCCCCCCCCCC
Q 010008          370 VVSNCRALASRLVEL-GYKLVS--GGSDNHLVLVDLRPMG-------ID---GARVEKILDMASITLNKNSVPGDKSALV  436 (520)
Q Consensus       370 i~~na~~l~~~L~~~-G~~v~~--~gt~~~~~~vd~~~~g-------~~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~  436 (520)
                      +.+..++|.+.|++. ...++.  .|. ..+..+.+....       .+   ...+.+.|.+.||.+..    .      
T Consensus       354 ~~~~g~~l~~~L~~l~~~~~v~~vrG~-Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~----~------  422 (466)
T PRK07036        354 VREVGPYFEERLASLRELPLVGDVRGD-HLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRP----L------  422 (466)
T ss_pred             HHHHHHHHHHHHHHhccCCCEEEEEee-ceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCCcEEee----c------
Confidence            666677777777552 222222  111 123334442111       11   23466677889999842    1      


Q ss_pred             CCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          437 PGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       437 ~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      .+.+|+..| ++   ++++|++++.+.+++++...
T Consensus       423 ~~~~~l~Pp-l~---it~~~id~~~~~l~~al~~~  453 (466)
T PRK07036        423 EHLCVLSPP-LI---ITRAQIDEIVAILRAAIEET  453 (466)
T ss_pred             CCEEEEeCC-Cc---CCHHHHHHHHHHHHHHHHHH
Confidence            135788644 43   56899999999999998754

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.85  E-value=1.5e-06  Score=85.46  Aligned_cols=318  Identities=17%  Similarity=0.182  Sum_probs=163.9

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-----
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-----  179 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al-----  179 (520)
                      -.|.+++|+.+....-+   ..++-||.  ....+++    +++.++||-+.     .+...+|.+|+..++.-.     
T Consensus        76 chpki~~aLqeq~~kLt---lssrafYn--d~~~~f~----~~vt~lf~~~k-----vlpmnTGaEa~Eta~KLaR~wgy  141 (427)
T KOG1402|consen   76 CHPKIIKALQEQADKLT---LSSRAFYN--DVLGEFA----EYVTKLFGYDK-----VLPMNTGAEAVETACKLARKWGY  141 (427)
T ss_pred             CCHHHHHHHHHHHhHhh---hhhHHHhh--hhHHHHH----HHHHHhcCcce-----eeecccchhHHHHHHHHHHHHHH
Confidence            57889999888776333   22223442  2233444    78899999885     234567889888766422     


Q ss_pred             -CC--CCCEEEEcCCCCCccccccccccccccccccceEEEEEc-ccCCC-C---CCCCHHHHHHHhhhcCCcEEEEcCC
Q 010008          180 -LK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY-RLDES-T---GLVDYDMLEKTAILFRPKLIIAGAS  251 (520)
Q Consensus       180 -l~--pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~-~~d~~-~---~~iD~d~le~~i~~~~pklIi~~~s  251 (520)
                       .+  |.|+-.++...  +.+ ||..+  ..+++++..-....| |.-|. .   -.-|.++|+.+++..+...+++..-
T Consensus       142 ~~K~ip~nka~il~~~--~nF-hGrT~--~ais~s~d~ds~~~fgp~~P~~~~~v~Y~d~eale~~l~~~~vaaFivEPI  216 (427)
T KOG1402|consen  142 RKKNIPKNKAKILSAE--NNF-HGRTL--GAISLSTDPDSWDGFGPFLPGVVDKVPYGDAEALEVALKSPNVAAFIVEPI  216 (427)
T ss_pred             hhccCCccceeEEEec--ccc-cCcee--eeEEecCCcchhhccCCCCCCcceeeccCCHHHHHHHhcCCCeeEEEeecc
Confidence             22  55554443321  011 22111  122222211000000 00000 0   1236788888887644555555421


Q ss_pred             C------CCCCCCHHHHHHHHHHhCCEEEEechhhccccccccc-CCCCC--cccEEEeccCcccCCCC--ceEEEeeCC
Q 010008          252 A------YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV-ADPFK--YCDVVTTTTHKSLRGPR--GGMIFFKKD  320 (520)
Q Consensus       252 ~------~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~~p~~--~aDiv~~S~hK~l~Gpr--gG~I~~~~~  320 (520)
                      .      .|..--+++.+++|.+|++++|.|+.|. |+--.|.. ....+  -.|++...  |.|.|.-  ...+++.+ 
T Consensus       217 QGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQT-Gl~RTGk~la~d~env~PDivilg--KalSGG~~Pvsavl~~~-  292 (427)
T KOG1402|consen  217 QGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQT-GLARTGKLLACDYENVRPDIVILG--KALSGGVYPVSAVLADD-  292 (427)
T ss_pred             ccccceEeCCchhHHHHHHHHHhhcEEEEehhhhh-cccccCcEEEeehhhcCCCeEEEe--ccccCCeeeeEEEEecH-
Confidence            1      1112238999999999999999999874 54322211 00001  35888877  8886522  24455555 


Q ss_pred             CcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEE---ec--CCCCC
Q 010008          321 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL---VS--GGSDN  395 (520)
Q Consensus       321 ~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v---~~--~gt~~  395 (520)
                           ++...++...-..+.|+.....-.|+| +|+.+.+   +...++....-..|..+|.+..-++   +.  .| ..
T Consensus       293 -----~im~~~~pgeHgsTyggNpLg~~vaiA-alevi~e---ekL~era~~lG~~l~~~L~~l~~~~p~~v~~VRG-rG  362 (427)
T KOG1402|consen  293 -----DIMLNIKPGEHGSTYGGNPLGCAVAIA-ALEVIVE---EKLVERAAKLGEILRDQLNKLQKKFPHVVKEVRG-RG  362 (427)
T ss_pred             -----HHHhccCCCccccccCCChHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHhccccccchhheeec-cc
Confidence                 555556554433334443332222332 5655543   2233444444455666666532221   11  12 12


Q ss_pred             eeEEEEecCC---CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          396 HLVLVDLRPM---GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       396 ~~~~vd~~~~---g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      .+..+.+.+.   +.+...+.-.|.+.|+...    |-     -..-||+..| ++   ++|+|+++-.++|.+.+
T Consensus       363 l~~ai~i~~~~~~~~~aw~~cl~lk~~g~LAk----pt-----H~~IiRfaPP-L~---I~e~dl~eg~e~i~k~i  425 (427)
T KOG1402|consen  363 LLNAIVINPSKTSGQDAWDVCLALKENGLLAK----PT-----HGNIIRFAPP-LV---ISEEDLREGIEAIEKTI  425 (427)
T ss_pred             eEEEEEeccccccchhHHHHHHcccccccccC----CC-----CCCeEEecCC-cc---cCHHHHHHHHHHHHHHh
Confidence            2333333322   2344445566677887762    21     1346999755 44   67999999999998765

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=98.84  E-value=1.8e-06  Score=91.92  Aligned_cols=209  Identities=19%  Similarity=0.162  Sum_probs=110.9

Q ss_pred             HHHHHHHhhh--cCCcEEEEcC-CCCCC-----CCCHHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEE
Q 010008          231 YDMLEKTAIL--FRPKLIIAGA-SAYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVV  299 (520)
Q Consensus       231 ~d~le~~i~~--~~pklIi~~~-s~~p~-----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv  299 (520)
                      ++++++.+..  .++.+||+.. ....+     .-.+++|+++|++||+++|+|++|. |+-..|.. . .-+. ..|++
T Consensus       205 l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-G~GrtG~~~a~~~~gv~PDi~  283 (431)
T TIGR03251       205 LRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQT-GVGLTGTAWAYQQLGVQPDIV  283 (431)
T ss_pred             HHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchh-ccCccchHHHHHhcCCCCCEE
Confidence            4455556643  2456777752 12222     2358899999999999999999976 43222210 0 0111 36888


Q ss_pred             EeccCcccCCCCceEEEeeCCCcchhhHHH-hhc-ccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 010008          300 TTTTHKSLRGPRGGMIFFKKDPVLGVELES-AIN-NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL  377 (520)
Q Consensus       300 ~~S~hK~l~GprgG~I~~~~~~~~~~~l~~-~i~-~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l  377 (520)
                      +++  |.+  |-+|++..++ .   .++.. ... .....++.++.... +++..++|+.+.++++   .+++.+..+.|
T Consensus       284 ~~g--K~~--~~~g~~~~~~-i---~~~~~~~~~~~~~~~~T~~gnpl~-~aaa~a~L~~l~~~~l---~~~~~~~g~~l  351 (431)
T TIGR03251       284 AFG--KKT--QVCGIMAGRR-V---DEVADNVFAVPSRLNSTWGGNLVD-MVRATRILEIIEEERL---VDNARVQGAHL  351 (431)
T ss_pred             Eec--ccC--ccceEEecch-H---HHhhhhcccCccccCCCCCCCHHH-HHHHHHHHHHHHhcCH---HHHHHHHHHHH
Confidence            764  876  5567775543 0   01111 111 11111223333333 3333345776654443   34455555666


Q ss_pred             HHHHHHC--CCE-EecCCC-CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCC
Q 010008          378 ASRLVEL--GYK-LVSGGS-DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFS  453 (520)
Q Consensus       378 ~~~L~~~--G~~-v~~~gt-~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~  453 (520)
                      .+.|++.  .+. ++..-. ...+..+.+.... ....+.+.|.+.||.+.    |.     ....+|+..+..    .+
T Consensus       352 ~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~~~-~~~~~~~~l~~~Gvl~~----~~-----g~~~lr~~P~l~----~t  417 (431)
T TIGR03251       352 LARLHELAAEFPHLVSNPRGRGLMCAFDLPSTA-DRDEVIRQLYREGVLLL----GC-----GERSIRFRPPLT----VT  417 (431)
T ss_pred             HHHHHHHHHhCccceecccccceeEEEEeCCHH-HHHHHHHHHHhCCeEEe----cC-----CCCeEEEECCcc----CC
Confidence            6666441  122 222111 1233344553211 13457777889999983    21     235699976643    56


Q ss_pred             HHHHHHHHHHHHH
Q 010008          454 EKEFVAIADFIHE  466 (520)
Q Consensus       454 ~~d~~~la~~i~~  466 (520)
                      ++|++++.+.+++
T Consensus       418 ~~eid~~l~~l~~  430 (431)
T TIGR03251       418 REEIDAAIDAIRR  430 (431)
T ss_pred             HHHHHHHHHHHHh
Confidence            8999999998875

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=98.82  E-value=1.1e-07  Score=96.92  Aligned_cols=314  Identities=16%  Similarity=0.161  Sum_probs=163.8

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC--CCCCEEEEcCCCCCcccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--KPHDRIMGLDLPHGGHLSHGFMTPKRRVSG  210 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all--~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~  210 (520)
                      |+..+-.+-......+.+..|+....- +.|.|..-.-.+.+++.++-  ..++.|+.+..+|-..        .+.+..
T Consensus        50 Gss~~~~ltn~l~~d~~~~~G~~~~~~-~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc--------~kai~~  120 (389)
T PF05889_consen   50 GSSLLAKLTNSLVLDALRLAGLRSVKS-CFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSC--------FKAIER  120 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTHTTHCE-EEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHH--------HHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHcCCccccc-eEEEecccccHHHHHHHHHhcccCCceEEEeeccccch--------HHHHHh
Confidence            444444444333344556788874221 23433332235555666663  4568888877654321        135566


Q ss_pred             ccceEEEEEcccCCCCCCCCHHHHHHHhhhcCC--cEEEEcCC--CCCCCCC-HHHHHHHHHHhCCEEEEechhhccccc
Q 010008          211 TSIYFESMPYRLDESTGLVDYDMLEKTAILFRP--KLIIAGAS--AYPRDFD-YPRMRQIADAVGALLMMDMAHISGLVA  285 (520)
Q Consensus       211 ~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~p--klIi~~~s--~~p~~~d-~~~i~~ia~~~g~~li~D~Ah~~gli~  285 (520)
                      +|....+++--..++.-..|.+.+++.+++..+  .+.+++++  .+|+..| +++|++||+++|++.++..|+..-...
T Consensus       121 AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~  200 (389)
T PF05889_consen  121 AGLEPVVVENVLEGDELITDLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSK  200 (389)
T ss_dssp             TT-EEEEE-EEEETTEEEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HH
T ss_pred             cCCeEEEeeccCCCCeeeccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHH
Confidence            675444444323333345678889999876543  45566533  4677666 999999999999999999985430000


Q ss_pred             c-cccCCC--CCcccEEEeccCcccCCCCceEEEeeCCCcchhhHHHhhcccCCCCC-CCCChHHHHHHHHHHHHHhcCc
Q 010008          286 A-SVVADP--FKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGL-QGGPHNHTIGGLAVCLKHAQSP  361 (520)
Q Consensus       286 ~-~~~~~p--~~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~-~g~p~~~~iaala~al~~~~~~  361 (520)
                      . ......  ..-.|+++-|+-|.|.-|-||.+++..+.    .....+.+. +|+- ..+|....+-    -|..+...
T Consensus       201 ~~~~i~~a~~~GRvda~vqS~dkNF~VPvGgai~As~~~----~~i~~vs~~-YpGRas~sp~ld~~i----tLl~LG~~  271 (389)
T PF05889_consen  201 CMHLIQQAWRVGRVDAFVQSTDKNFMVPVGGAIMASFDP----SGILAVSKE-YPGRASASPSLDLFI----TLLSLGCT  271 (389)
T ss_dssp             HHHHHHHHHHHSTCSEEEEEHHHHHCEESSHEEEEESSH----HHHHHHHHT-SHSHBTSHHHHHHHH----HHHHHHHH
T ss_pred             HHHHHHHHHhcCCcceeeeecCCCEEecCCCcEEEecCH----HHHHHHHHH-hhhhhhcccchHHHH----HHHHHhhh
Confidence            0 000000  01368999999999988888766665531    455555543 4443 2333333221    12222223


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH----CCCEEecCCCCCeeEE-EEecCCCC----CHHHHHHHHhhcCeEEcCCCCCCCC
Q 010008          362 EFKVYQNKVVSNCRALASRLVE----LGYKLVSGGSDNHLVL-VDLRPMGI----DGARVEKILDMASITLNKNSVPGDK  432 (520)
Q Consensus       362 ~~~~~~~~i~~na~~l~~~L~~----~G~~v~~~gt~~~~~~-vd~~~~g~----~~~~~~~~L~~~gI~v~~~~~Pg~~  432 (520)
                      +|.....+..+.-.++.++|++    .|-.+.. ...||..+ +++....-    +..++...|...||.-.+...|++.
T Consensus       272 g~~~ll~~r~~~f~~l~erl~~~aee~~e~ll~-~p~N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~  350 (389)
T PF05889_consen  272 GYGALLKERKASFPYLKERLKKWAEEVGERLLE-TPRNHISMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGK  350 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTEEBSS-STT-SSEEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC-CCCCCeeEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCC
Confidence            4555556666666666666654    4534332 12466543 34432211    2356788888888763321122221


Q ss_pred             ------CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          433 ------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       433 ------~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                            +.+...++-+.    .+.|++++|++.+++.++++++
T Consensus       351 ~~tsh~~~yp~~Ylt~A----saiG~~~eevd~~v~rL~k~i~  389 (389)
T PF05889_consen  351 KQTSHSSNYPCPYLTAA----SAIGMTREEVDYFVKRLDKIIK  389 (389)
T ss_dssp             EEETTSS--SSSEEEEE----E-TT--HHHHHHHHHHHHHHHH
T ss_pred             cccccCCCCchHHHHHH----HHhCCCHHHHHHHHHHHHHHhC
Confidence                  11122455552    2368999999999999999874

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=98.81  E-value=3.9e-07  Score=92.23  Aligned_cols=238  Identities=18%  Similarity=0.155  Sum_probs=143.1

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh---CCCC----------CEEEEcCCCCCccccccccc
Q 010008          137 IDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI---LKPH----------DRIMGLDLPHGGHLSHGFMT  203 (520)
Q Consensus       137 ~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al---l~pG----------D~Vl~~~~~~~ghls~g~~~  203 (520)
                      .-.+|..+.....++.|.+...+  .+....|+-+|+.++.+-   .-|+          +-|+..+  ..+|+|--   
T Consensus       139 F~lmE~~vl~km~~ivGw~~~~D--gIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtS--eesHYSi~---  211 (510)
T KOG0629|consen  139 FVLMEEEVLAKMREIVGWEEGGD--GIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTS--EESHYSIK---  211 (510)
T ss_pred             EEeehHHHHHHHHHHhCCCCCCC--ceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEec--ccchhhHH---
Confidence            33456666677778888876422  455567776776555442   1122          3344333  23343321   


Q ss_pred             cccccccccce-EEEEEcccCCCCCCCCHHHHHHHhhhcCCc-----EEEEc--CCCCCCCCCHHHHHHHHHHhCCEEEE
Q 010008          204 PKRRVSGTSIY-FESMPYRLDESTGLVDYDMLEKTAILFRPK-----LIIAG--ASAYPRDFDYPRMRQIADAVGALLMM  275 (520)
Q Consensus       204 ~~~~v~~~g~~-~~~v~~~~d~~~~~iD~d~le~~i~~~~pk-----lIi~~--~s~~p~~~d~~~i~~ia~~~g~~li~  275 (520)
                        +...+.|.+ ...+.++.| +.|.+++++||+.|.+.+-|     ++-++  .+.++-..|++.|+++|++|+.|+++
T Consensus       212 --kaAa~lg~gtd~c~~v~t~-e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHv  288 (510)
T KOG0629|consen  212 --KAAAFLGLGTDHCIKVKTD-ERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHV  288 (510)
T ss_pred             --HHHHHhccCCceeEEeccc-ccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEe
Confidence              233444432 234455565 57999999999988764433     33332  22334477999999999999999999


Q ss_pred             echhhcccccccccCCC---CCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhc---------ccC-------
Q 010008          276 DMAHISGLVAASVVADP---FKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAIN---------NAV-------  335 (520)
Q Consensus       276 D~Ah~~gli~~~~~~~p---~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~---------~~~-------  335 (520)
                      |+|+.-|+.-...+..-   ++-+|-|+.+.||++..|-- +.++++.+     .+..+-+         +-.       
T Consensus       289 DAAwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~-----gll~~Cn~~~A~YLFq~dK~YdvS~D  363 (510)
T KOG0629|consen  289 DAAWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREE-----GLLQRCNQMSAIYLFQQDKFYDVSYD  363 (510)
T ss_pred             ecccccccccChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHH-----HHHHhhcccchhhhhccCceeecccc
Confidence            99987766644333222   23589999999999866543 66666653     2211111         000       


Q ss_pred             --CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEec
Q 010008          336 --FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVS  390 (520)
Q Consensus       336 --~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~  390 (520)
                        .-..|.|.|.... -++.-++--...+|++.+++..+++++|.+.|++. |+..+-
T Consensus       364 TgdK~iQCGRh~D~F-KlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~  420 (510)
T KOG0629|consen  364 TGDKAIQCGRHVDVF-KLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLF  420 (510)
T ss_pred             cccchhhcCccccHH-HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehh
Confidence              0123555454332 23434443345678999999999999999999985 555554

>PRK12566 glycine dehydrogenase; Provisional

Probab=98.75  E-value=5.6e-06  Score=93.54  Aligned_cols=207  Identities=15%  Similarity=0.083  Sum_probs=128.7

Q ss_pred             HHHHHhhhcCCcEEEEcCCCCCC-CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEEEeccCc-----
Q 010008          233 MLEKTAILFRPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHK-----  305 (520)
Q Consensus       233 ~le~~i~~~~pklIi~~~s~~p~-~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S~hK-----  305 (520)
                      ++++.+.. ++-.+++.+|++-+ ..|+++|.+++|+.|+++++ .+   ..++..+...|-+ |+||++++.+-     
T Consensus       200 ~~~~~~~~-~~~~v~vq~P~~~G~i~d~~~i~~~~h~~gal~~~-~~---d~laL~ll~~Pge~GADI~vG~~Q~fGvp~  274 (954)
T PRK12566        200 AVDNLAAH-AVFGALLQYPDTHGEIRDLRPLIDQLHGQQALACV-AA---DLLSLLVLTPPGELGADVVLGSTQRFGVPM  274 (954)
T ss_pred             chhhcCCC-CEEEEEEECCCCceEEccHHHHHHHHHHcCCEEEE-Ee---CHHHHhCCCChhhcCCcEEeeCCCcCCCCC
Confidence            33444433 56678888888665 66999999999999998664 33   3344444555655 89999886553     


Q ss_pred             ccCCCCceEEEeeCCC-----c-----------------chhhHHHhhcccCCCCCCCCChHHHHHHHHHHH--HHhcCc
Q 010008          306 SLRGPRGGMIFFKKDP-----V-----------------LGVELESAINNAVFPGLQGGPHNHTIGGLAVCL--KHAQSP  361 (520)
Q Consensus       306 ~l~GprgG~I~~~~~~-----~-----------------~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al--~~~~~~  361 (520)
                      .++||..|++.+++..     +                 .+..-++.|++-.-....+  .+..+.|+.+++  -.+...
T Consensus       275 ~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNIC--T~qaL~A~~a~~Y~~~~Gp~  352 (954)
T PRK12566        275 GYGGPHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNIC--TAQVLLANIAGFYAVYHGPE  352 (954)
T ss_pred             CCCCCCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhh--HHHHHHHHHHHHHHHHhChH
Confidence            4578888999998731     0                 0011111222211111111  122333443332  223344


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCee--EEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCE
Q 010008          362 EFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL--VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGG  439 (520)
Q Consensus       362 ~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~--~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~g  439 (520)
                      ++++..+++..++.+|++.|.+.|+++...   .++  +.+++   +.+..++.+...+.||-++..         ..+.
T Consensus       353 Gl~~ia~~~~~~a~~l~~~l~~~g~~~~~~---~fF~~~~v~~---~~~~~~~~~~a~~~~~n~r~~---------~~~~  417 (954)
T PRK12566        353 GLKRIAQRVHRLTAILAAGLEAKGIKRLNR---HFFDTLTLEV---GGAQAAIIESAEAARINLRIL---------GRGR  417 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCccccC---CccceEEEEc---cCCHHHHHHHHHHCCCeeEEe---------CCCe
Confidence            578889999999999999999999998653   222  23333   213556666666788887642         1345


Q ss_pred             EEEccCCccccCCCHHHHHHHHHHHH
Q 010008          440 IRIGSPAMTTRGFSEKEFVAIADFIH  465 (520)
Q Consensus       440 iRig~~~~tt~g~~~~d~~~la~~i~  465 (520)
                      +.|++...|+    ++|++.+.+.+.
T Consensus       418 ~~~s~de~~~----~~~~~~~~~~f~  439 (954)
T PRK12566        418 LGVSLDETCD----EATVARLFDIFL  439 (954)
T ss_pred             EEEEeCCCCC----HHHHHHHHHHhc
Confidence            7788776655    899999999884

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=98.74  E-value=3.1e-06  Score=86.77  Aligned_cols=314  Identities=15%  Similarity=0.082  Sum_probs=175.7

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCC------CceeeecCChHHHHHHHHHhh-------CCCC-----------CEEEE
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENK------WGVNVQPLSGSPANFEVYTAI-------LKPH-----------DRIMG  188 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~------~~~~V~~~sGs~A~~~~l~al-------l~pG-----------D~Vl~  188 (520)
                      .++...+||...-+|+.++.+++...      -+.-|.-.|.|++++.++.+-       ++.+           +-|+.
T Consensus       107 ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y  186 (511)
T KOG0628|consen  107 SSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAY  186 (511)
T ss_pred             cCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEE
Confidence            46778899999999999999986321      111233456777777666553       2222           22332


Q ss_pred             cCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcC-----CcEEEEcC-CCCCC-CCCHHH
Q 010008          189 LDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIAGA-SAYPR-DFDYPR  261 (520)
Q Consensus       189 ~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~-----pklIi~~~-s~~p~-~~d~~~  261 (520)
                      .+  ..+|   ...  .++....+.  +...++.| +++.++.+.|+++|++..     |-.++++. +.++. ..++.+
T Consensus       187 ~S--Dqah---ssv--eka~~i~~V--klR~l~td-~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~e  256 (511)
T KOG0628|consen  187 CS--DQAH---SSV--EKACLIAGV--KLRALPTD-ENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELEE  256 (511)
T ss_pred             ec--Cccc---chH--HHhHhhcce--eEEEeecc-cCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHHH
Confidence            22  1122   111  122223333  44445555 378999999999998643     44455542 33333 667999


Q ss_pred             HHHHHHHhCCEEEEechhhcccccc-ccc---CCCCCcccEEEeccCcccCCC-CceEEEeeCCC------cchhhHH--
Q 010008          262 MRQIADAVGALLMMDMAHISGLVAA-SVV---ADPFKYCDVVTTTTHKSLRGP-RGGMIFFKKDP------VLGVELE--  328 (520)
Q Consensus       262 i~~ia~~~g~~li~D~Ah~~gli~~-~~~---~~p~~~aDiv~~S~hK~l~Gp-rgG~I~~~~~~------~~~~~l~--  328 (520)
                      |..+|+++|+||++|+| |+|-.+. ...   -..++++|-+.+..|||+.-- -...++.+++-      ..-..+.  
T Consensus       257 lg~Vc~~~glWLHVDAA-YAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h  335 (511)
T KOG0628|consen  257 LGPVCREEGLWLHVDAA-YAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKH  335 (511)
T ss_pred             hcchhhhcCEEEEeehh-hccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcc
Confidence            99999999999999988 6664322 111   133457999999999997321 11223333320      0000111  


Q ss_pred             HhhcccC-CCCCCCCChHHHHHHHH--HHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecCCCCCeeEEEEecC
Q 010008          329 SAINNAV-FPGLQGGPHNHTIGGLA--VCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLVLVDLRP  404 (520)
Q Consensus       329 ~~i~~~~-~p~~~g~p~~~~iaala--~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~gt~~~~~~vd~~~  404 (520)
                      +...... +.. .+=|....+-++-  .-++....+.+++|.++..+.++.+-+.+.+ .-|+++.+   .++-++.++.
T Consensus       336 ~~~~~~~Dyrh-wqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~---~~lgLvcFRl  411 (511)
T KOG0628|consen  336 AYQGSAPDYRH-WQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNK---RILGLVCFRL  411 (511)
T ss_pred             hhhccCCCccc-cccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeecc---cccceeEEee
Confidence            1111111 111 2223334444443  3355555556677777777777777666554 46777764   4666777776


Q ss_pred             CCCCH--HHHHHHHh-hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          405 MGIDG--ARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       405 ~g~~~--~~~~~~L~-~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      ++-+.  +.+.+.+. ...|.....++-      +.-.||+...+   .-.+++|+++.-+.|.+....
T Consensus       412 k~~N~~ne~Ll~~in~~g~i~l~~~~l~------gk~vlRf~V~s---~~t~~~di~~a~~~I~~~a~~  471 (511)
T KOG0628|consen  412 KGDNEINEALLNRLNSSGRIHLVPASLH------GKFVLRFAVCS---PLTNESDIDEAWKIIFEAADE  471 (511)
T ss_pred             cCCcHHHHHHHHHHHhcCcEEEEEeeec------ceEEEEEEecC---CCCcHHHHHHHHHHHHHHHHH
Confidence            65432  33444443 355666332211      12248976433   224589999988888777654

>PRK08297 L-lysine aminotransferase; Provisional

Probab=98.73  E-value=9.6e-06  Score=86.52  Aligned_cols=211  Identities=18%  Similarity=0.172  Sum_probs=114.0

Q ss_pred             HHHHHHHhhh--cCCcEEEEcCC-CCCC-----CCCHHHHHHHHHHhCCEEEEechhhccccccccc--CCCCC-cccEE
Q 010008          231 YDMLEKTAIL--FRPKLIIAGAS-AYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVV  299 (520)
Q Consensus       231 ~d~le~~i~~--~~pklIi~~~s-~~p~-----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~--~~p~~-~aDiv  299 (520)
                      ++++++.+..  .++.+||+..- ...+     ...+++++++|++||+++|+|+.+. |+--.|..  ..-+. ..|++
T Consensus       212 ~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~t-GfGRtG~~~a~~~~gv~PDiv  290 (443)
T PRK08297        212 LAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQT-GVGLTGTAWAYQQLGVRPDIV  290 (443)
T ss_pred             HHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-ccCccchHHHHHhcCCCCCEE
Confidence            4556666653  24567777521 1112     2358899999999999999999964 43212210  00011 36898


Q ss_pred             EeccCcccCCCCceEEEeeCCCcchhhHH-Hhhc-ccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 010008          300 TTTTHKSLRGPRGGMIFFKKDPVLGVELE-SAIN-NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL  377 (520)
Q Consensus       300 ~~S~hK~l~GprgG~I~~~~~~~~~~~l~-~~i~-~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l  377 (520)
                      ++  .|.+  |-+|++..++ .   .+.. ..+. .....++.++......+++ .+++.+.+++   ..+++.+..+.+
T Consensus       291 ~~--gK~l--~~~a~l~~~~-i---~~~~~~~~~~~~~~~~T~~gnpl~~aaa~-a~L~~l~~~~---l~~~~~~~g~~l  358 (443)
T PRK08297        291 AF--GKKT--QVCGIMAGRR-V---DEVEDNVFAVSSRINSTWGGNLVDMVRAR-RILEVIEEDG---LVENAARQGEYL  358 (443)
T ss_pred             Ee--cccc--cccceecchH-H---HHhhhhhccCccccCCCCCccHHHHHHHH-HHHHHHHhcC---HHHHHHHHHHHH
Confidence            76  5987  3456665543 0   0111 1111 1111122333333333333 3566554433   345566666667


Q ss_pred             HHHHHHC--CCEEe---cCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCC
Q 010008          378 ASRLVEL--GYKLV---SGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGF  452 (520)
Q Consensus       378 ~~~L~~~--G~~v~---~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~  452 (520)
                      .+.|++.  .+..+   ..|. ..++.+.+.... ....+.+.|.+.||.+.    |.     ....+|+..+ ++   +
T Consensus       359 ~~~L~~l~~~~~~~~~~vrg~-G~~~~i~~~~~~-~~~~~~~~l~~~Gvl~~----~~-----~~~~lr~~P~-l~---~  423 (443)
T PRK08297        359 LARLEELAAEFPAVVSNVRGR-GLMCAFDLPTTA-DRDEVIRRLWEEGVLVL----PC-----GERSIRFRPA-LT---V  423 (443)
T ss_pred             HHHHHHHHHHCCCcceeeecc-ceEEEEEecCHH-HHHHHHHHHHHCCEEEe----cC-----CCCeEEEECC-cc---C
Confidence            7766552  12211   1122 344455553211 13456677778999983    32     1346899644 33   6


Q ss_pred             CHHHHHHHHHHHHHHHH
Q 010008          453 SEKEFVAIADFIHEGVE  469 (520)
Q Consensus       453 ~~~d~~~la~~i~~~l~  469 (520)
                      +++|++++.+.+.+++.
T Consensus       424 t~~eid~~l~~l~~~l~  440 (443)
T PRK08297        424 TTEEIDAAIDALRRALP  440 (443)
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            79999999999998875

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=98.72  E-value=1.9e-05  Score=82.56  Aligned_cols=211  Identities=21%  Similarity=0.216  Sum_probs=120.4

Q ss_pred             HHHHHHHhhhcCCc---EEEEcC---CCCCC----CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC------
Q 010008          231 YDMLEKTAILFRPK---LIIAGA---SAYPR----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK------  294 (520)
Q Consensus       231 ~d~le~~i~~~~pk---lIi~~~---s~~p~----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~------  294 (520)
                      .++|++++.++.|.   ++|+..   ..-+.    .--++++++||++||++||+|+. ..|+--.|   ..|.      
T Consensus       200 a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV-~tGFGRTG---~~FA~e~~gi  275 (449)
T COG0161         200 ADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEV-ATGFGRTG---KMFACEHAGI  275 (449)
T ss_pred             HHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecc-eeCCCcCc---hhhhhhhcCC
Confidence            57788888876643   444431   11111    22389999999999999999986 44432212   2221      


Q ss_pred             cccEEEeccCcccCCCC--ceEEEeeCCCcchhhHHHhhccc----CCCCC-CCCChHHHHHHHHHHHHHhcCchhHHHH
Q 010008          295 YCDVVTTTTHKSLRGPR--GGMIFFKKDPVLGVELESAINNA----VFPGL-QGGPHNHTIGGLAVCLKHAQSPEFKVYQ  367 (520)
Q Consensus       295 ~aDiv~~S~hK~l~Gpr--gG~I~~~~~~~~~~~l~~~i~~~----~~p~~-~g~p~~~~iaala~al~~~~~~~~~~~~  367 (520)
                      -.|+++.+  |.|+|.-  -|.+++++      ++.+.+...    .+.|. +.+......+|++ .|+...++   ...
T Consensus       276 ~PDi~~~a--KGLT~GY~Pl~a~l~~~------~I~~~~~~~~~~~f~HG~TYsghPlacAaAla-~L~i~e~e---~l~  343 (449)
T COG0161         276 VPDILCLA--KGLTGGYLPLSAVLTSD------RIYEAFSDGDAGAFMHGHTYSGNPLACAAALA-NLDILEEE---DLL  343 (449)
T ss_pred             CCCeeeec--ccccccchhhHhHhhhH------HHHHHHhcccCCeeccCCccccCHHHHHHHHH-HHHHHHhc---CHH
Confidence            25888877  9986522  25555555      455544332    22222 2232222233333 35555443   346


Q ss_pred             HHHHHHHHHHHHHHHH--CCCEEecCCC-CCeeEEEEecCC-C-CC------HHHHHHHHhhcCeEEcCCCCCCCCCCCC
Q 010008          368 NKVVSNCRALASRLVE--LGYKLVSGGS-DNHLVLVDLRPM-G-ID------GARVEKILDMASITLNKNSVPGDKSALV  436 (520)
Q Consensus       368 ~~i~~na~~l~~~L~~--~G~~v~~~gt-~~~~~~vd~~~~-g-~~------~~~~~~~L~~~gI~v~~~~~Pg~~~~~~  436 (520)
                      +++.+...+|.+.|.+  .+.+.+.+-. ...+..+.+... + ..      +..+.+.+.+.|+.++..   |+     
T Consensus       344 ~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~---g~-----  415 (449)
T COG0161         344 ERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPL---GD-----  415 (449)
T ss_pred             HHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEEeec---CC-----
Confidence            6677778888888886  3333443211 112233343221 1 11      456778888999999642   22     


Q ss_pred             CCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          437 PGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       437 ~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                        .+=++.|.+    .+++|++++.+.+.++++..
T Consensus       416 --~i~~~PPli----it~~eid~l~~~l~~al~~~  444 (449)
T COG0161         416 --VIYLMPPLI----ITREEIDELVDALREALDET  444 (449)
T ss_pred             --EEEEcCCcc----CCHHHHHHHHHHHHHHHHHH
Confidence              344444433    45899999999999998864

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=98.71  E-value=2.3e-06  Score=86.02  Aligned_cols=182  Identities=19%  Similarity=0.254  Sum_probs=108.1

Q ss_pred             CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC----cccEEEeccCccc-CCCCceEEEeeCCCcchhhHHHhhc
Q 010008          258 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAIN  332 (520)
Q Consensus       258 d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~----~aDiv~~S~hK~l-~GprgG~I~~~~~~~~~~~l~~~i~  332 (520)
                      -+++..++|+++|.++|.|+++. |+--.| +-..|+    -.||++.+  |.+ .|-..|.+++.+      ++.+-+.
T Consensus       234 Ylka~~~~v~k~Ggl~IaDEVqt-GfGRtG-~~wgfe~h~v~PDIvTmA--KgiGnG~Pl~AVvtt~------EIa~v~~  303 (442)
T KOG1404|consen  234 YLKAAYKVVRKRGGLFIADEVQT-GFGRTG-HMWGFESHGVVPDIVTMA--KGIGNGFPLGAVVTTP------EIADVLN  303 (442)
T ss_pred             HHHHHHHHHHHcCCEEEehhhhh-cccccc-ccccccccCCCccHHHHH--hhccCCCcceeeecCH------HHHHHHH
Confidence            38999999999999999999864 433233 223333    24776554  998 454557777777      6777666


Q ss_pred             ccC-CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH--CCCEEecCCCCCeeEE----EEec--
Q 010008          333 NAV-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE--LGYKLVSGGSDNHLVL----VDLR--  403 (520)
Q Consensus       333 ~~~-~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~--~G~~v~~~gt~~~~~~----vd~~--  403 (520)
                      +.. +..+.|+..+...++++ .|+-+.+   +..+++...-..+|.+.|.+  .+.+++.+-....+++    ++-+  
T Consensus       304 ~~~~~fnTyggnP~a~avg~a-VL~Vike---e~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~~  379 (442)
T KOG1404|consen  304 QKSSHFNTYGGNPVACAVGLA-VLKVIKE---ENLQENAAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELVSDKSE  379 (442)
T ss_pred             hccccccccCCCchhHHHHHH-HHHHHHH---HhHHHHHHHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEecccCC
Confidence            554 33334554454544554 3554433   23344444445566666655  3556665322223322    2222  


Q ss_pred             CCCC---CHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHH
Q 010008          404 PMGI---DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  464 (520)
Q Consensus       404 ~~g~---~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i  464 (520)
                      ++..   -+..+.+.+.+.|+.|+++.+-|+       .+||..| ++   +|.+|++.+++..
T Consensus       380 ~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G~-------vfriaPP-lc---iT~edi~f~~~~~  432 (442)
T KOG1404|consen  380 PKPPATAEGAVIGEQCKELGVLVGKGGIHGN-------VFRIAPP-LC---ITKEDIDFAVEYF  432 (442)
T ss_pred             CCCcchHHHHHHHHHHHHhCeeeecccccce-------EEEecCC-ee---ccHHHHHHHHHHH
Confidence            1111   134467888999999987655442       7999755 44   6789997777766

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=98.66  E-value=2.5e-06  Score=83.01  Aligned_cols=348  Identities=14%  Similarity=0.149  Sum_probs=191.4

Q ss_pred             ccceEec-CCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHH
Q 010008           94 KSLELIA-SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN  172 (520)
Q Consensus        94 ~~i~Lia-sen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~  172 (520)
                      +.|.|-. |-..+|+.+++.+...|. +|+.--....+.|-.+|+.- .+-+-..++.+.|++..++    .+.+.-.+|
T Consensus        67 ~~iYlcGNSLGLmPK~t~~~~~~eLD-kWak~av~gH~~GkvPW~~~-De~il~l~~~iVGA~e~Ev----avmNsLTvN  140 (465)
T KOG3846|consen   67 PVIYLCGNSLGLMPKSTRNSINAELD-KWAKCAVEGHFKGKVPWVSI-DEPILPLLAPIVGAQENEV----AVMNSLTVN  140 (465)
T ss_pred             CeEEEeccccccCchhhHhHHHHHHH-HHHhhhhhcccccccceeec-chhhhhhhhhhccCCchhh----hhHhhhhhH
Confidence            3444432 224678888888877764 33321000011222222211 1234467888999987654    234444555


Q ss_pred             HH-HHHhhCCCCC---EEEEcCCCCCccccccccccccccccccceEEEEEcccCCC--CCCCCHHHHHHHhhhcCC--c
Q 010008          173 FE-VYTAILKPHD---RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--TGLVDYDMLEKTAILFRP--K  244 (520)
Q Consensus       173 ~~-~l~all~pGD---~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~--~~~iD~d~le~~i~~~~p--k  244 (520)
                      .. ++.++.+|-.   +|+.   +.++..+..|..+ ..+...|...+-...-+.|.  ...+-.++|.+.|....-  .
T Consensus       141 lh~Ll~sFyKPTekR~KILl---E~kaFPSDhYAie-sQ~~lhG~~~e~sm~~iePREGEetlRteDILd~IEkngDeiA  216 (465)
T KOG3846|consen  141 LHSLLISFYKPTEKRFKILL---EKKAFPSDHYAIE-SQCKLHGISPENSMIQIEPREGEETLRTEDILDTIEKNGDEIA  216 (465)
T ss_pred             HHHHHHHhcCCcchhhhhhh---ccCCCCchHHHHH-hhhhhcCCChHHheEEecccccccchhHHHHHHHHHhcCCeEE
Confidence            54 5557777754   4553   3333344334222 23444454322222222222  246777888888876333  3


Q ss_pred             EEEEcCCCC-CC-CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCccc-CCCCc-eEEEeeCC
Q 010008          245 LIIAGASAY-PR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL-RGPRG-GMIFFKKD  320 (520)
Q Consensus       245 lIi~~~s~~-p~-~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l-~Gprg-G~I~~~~~  320 (520)
                      +|+++...| .+ .+|+.+|...-+..|+++=.|-||+.|-+...++..   ++|+.+....|.+ +|+.| |-++....
T Consensus       217 ~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdW---gVDFACWCSYKYlnaGaGgIgGlFvHek  293 (465)
T KOG3846|consen  217 LVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDW---GVDFACWCSYKYLNAGAGGIGGLFVHEK  293 (465)
T ss_pred             EEEeecceeecccccchhhhhhcccCCCcEechhhhhhhcCCceEEeec---CCceEEEeeecccccCCCccceeeeehh
Confidence            444444444 33 789999987667789999999999998776555554   5899999999998 55555 44555432


Q ss_pred             C---------cch-hhHHHhh--------cccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH
Q 010008          321 P---------VLG-VELESAI--------NNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLV  382 (520)
Q Consensus       321 ~---------~~~-~~l~~~i--------~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~  382 (520)
                      .         +.+ -+..+++        ......+-+++|..+..+|+-.+|+...+...++.+++-.-...+|...++
T Consensus       294 h~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~~~~lRkrS~lLTgYleyL~k  373 (465)
T KOG3846|consen  294 HTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFNINELRKRSLLLTGYLEYLLK  373 (465)
T ss_pred             hhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhhHHHHhhhhhhHHhHHHHHHH
Confidence            1         000 1111211        112223346789999999988888765543334444443333333322222


Q ss_pred             H-CCC-----------EEecCC-CC--CeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEcc-CC
Q 010008          383 E-LGY-----------KLVSGG-SD--NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS-PA  446 (520)
Q Consensus       383 ~-~G~-----------~v~~~g-t~--~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~-~~  446 (520)
                      . .|.           .++++. ++  .-...+-+..   ....+...|.++|+.+.+.         .|.+||+.. |-
T Consensus       374 ~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fss---p~~~vfqeL~krGv~~DkR---------~PNvIRvAPvpL  441 (465)
T KOG3846|consen  374 ASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSS---PTPKVFQELHKRGVIGDKR---------RPNVIRVAPVPL  441 (465)
T ss_pred             HhcccCchhhhcceeEEEeCCcccccccceEEEEeCC---CchHHHHHHHHcCeecccc---------CCCceEeecchh
Confidence            2 232           333331 11  1111222221   2367888999999998764         467899865 33


Q ss_pred             ccccCCCHHHHHHHHHHHHHHHHH
Q 010008          447 MTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       447 ~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +++    -.|+....+.+.+++..
T Consensus       442 YN~----f~Dvy~f~n~L~e~~d~  461 (465)
T KOG3846|consen  442 YNT----FSDVYIFVNALNEAMDK  461 (465)
T ss_pred             hcc----HHHHHHHHHHHHHHHHH
Confidence            433    57888888888877764

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=98.65  E-value=1.8e-06  Score=84.20  Aligned_cols=277  Identities=18%  Similarity=0.217  Sum_probs=157.6

Q ss_pred             eeeecCChHHHHHHHHH--hhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEccc-CCCCCCCCHHHHHHH
Q 010008          161 VNVQPLSGSPANFEVYT--AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEKT  237 (520)
Q Consensus       161 ~~V~~~sGs~A~~~~l~--all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~-d~~~~~iD~d~le~~  237 (520)
                      ..||..||+.|+.+...  +-.-+...|-+.+|+...|-.-.        .-.|- ..+-.|+. |.++..+|++.+...
T Consensus       101 ~~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if--------~~aGf-~tv~~Y~yWd~~~k~~d~e~~Lsd  171 (410)
T KOG1412|consen  101 FGVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIF--------EKAGF-TTVATYPYWDAENKCVDLEGFLSD  171 (410)
T ss_pred             cceeeccccchhhhhHHHHHHhcccceeEecCCchhHHHHHH--------HHcCC-ceeeeeeeecCCCceecHHHHHHH
Confidence            46899999988876432  22234567888889887773211        11221 12223333 345668999998888


Q ss_pred             hhhcCC-cEE-EEc-CCCCCCCC-----CHHHHHHHHHHhCCEEEEechhhcccccccccCCC--C----C-ccc-EEEe
Q 010008          238 AILFRP-KLI-IAG-ASAYPRDF-----DYPRMRQIADAVGALLMMDMAHISGLVAASVVADP--F----K-YCD-VVTT  301 (520)
Q Consensus       238 i~~~~p-klI-i~~-~s~~p~~~-----d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p--~----~-~aD-iv~~  301 (520)
                      ++. .| +.| ++. .-+||+-+     .|..|++..++.+.+.+.|.| |-|+..++.....  +    + +.. +|+-
T Consensus       172 l~~-APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiA-YQGfASGD~~~DawAiR~fV~~g~e~fv~Q  249 (410)
T KOG1412|consen  172 LES-APEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIA-YQGFASGDLDADAWAIRYFVEQGFELFVCQ  249 (410)
T ss_pred             Hhh-CCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehh-hcccccCCccccHHHHHHHHhcCCeEEEEh
Confidence            876 44 333 333 23566633     378899999999999999988 6676554432211  1    1 222 6778


Q ss_pred             ccCccc--CCCCceEE--EeeCCC---cchhhHHHhhcccC-CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010008          302 TTHKSL--RGPRGGMI--FFKKDP---VLGVELESAINNAV-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN  373 (520)
Q Consensus       302 S~hK~l--~GprgG~I--~~~~~~---~~~~~l~~~i~~~~-~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~n  373 (520)
                      ||.|.+  .++|.|-+  +.+++.   .....+...++... .|..+|.--.+.+..--.-.++.. ...+.+..++.+.
T Consensus       250 SFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~-~sik~MssRI~~M  328 (410)
T KOG1412|consen  250 SFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWI-QSIKTMSSRIKKM  328 (410)
T ss_pred             hhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHH-HHHHHHHHHHHHH
Confidence            999985  68888743  223321   00111211222211 233344322222211111112221 2345666777777


Q ss_pred             HHHHHHHHHHCCCEEecCCCCCeeE--EEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccC
Q 010008          374 CRALASRLVELGYKLVSGGSDNHLV--LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRG  451 (520)
Q Consensus       374 a~~l~~~L~~~G~~v~~~gt~~~~~--~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g  451 (520)
                      +.+|.+.|..+|    ++|+=.|+.  +--+.-.|++...+..+.+.+.|..-.           .|  ||+..     |
T Consensus       329 R~aLrd~L~aL~----TPGtWDHI~~QiGMFSyTGLtp~qV~~li~~h~vyLl~-----------~G--RInis-----G  386 (410)
T KOG1412|consen  329 RTALRDHLVALK----TPGTWDHITQQIGMFSYTGLTPAQVDHLIENHKVYLLS-----------DG--RINIS-----G  386 (410)
T ss_pred             HHHHHHHHHhcC----CCCcHHHHHhhccceeecCCCHHHHHHHHHhceEEEec-----------CC--cEeee-----c
Confidence            777777776643    444433421  001233578889998888899999832           22  45443     4


Q ss_pred             CCHHHHHHHHHHHHHHHHHH
Q 010008          452 FSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       452 ~~~~d~~~la~~i~~~l~~~  471 (520)
                      ++...++++|.+|+++++..
T Consensus       387 LN~~NveyVAkAIde~Vr~~  406 (410)
T KOG1412|consen  387 LNMKNVEYVAKAIDETVRAI  406 (410)
T ss_pred             cccccHHHHHHHHHHHHHhh
Confidence            55689999999999998743

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=98.60  E-value=3.6e-05  Score=87.24  Aligned_cols=186  Identities=13%  Similarity=0.050  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEeccCcccCCC--CceEEEeeCCCcchhhHHHhhcc
Q 010008          259 YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRGP--RGGMIFFKKDPVLGVELESAINN  333 (520)
Q Consensus       259 ~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S~hK~l~Gp--rgG~I~~~~~~~~~~~l~~~i~~  333 (520)
                      +++++++|+++|++||+|+.+ .|+--.|.. . .-+. ..||++++  |.|+|.  ..|.+++++      ++.+.+..
T Consensus       608 l~~lr~lc~~~gilLI~DEV~-TGfGRtG~~fa~e~~gv~PDIi~~g--KgLtgG~~Plaa~l~~~------~I~~~f~~  678 (817)
T PLN02974        608 QRALVQVCRSRKIPVIFDEVF-TGLWRLGVESAWELLGCKPDIACYA--KLLTGGLVPLAATLATE------EVFEAFRG  678 (817)
T ss_pred             HHHHHHHHHHhCCEEEEeecc-cCCCcccchhhHHhcCCCCCEEeec--ccccCCCCccEEEEEcH------HHHHhhcc
Confidence            789999999999999999984 454222211 0 0011 36999888  999653  457777777      56555531


Q ss_pred             -----cCCC-CCCCCChHHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHHHHHHHH--CCCEEecCCC-CCeeEEEEec
Q 010008          334 -----AVFP-GLQGGPHNHTIGGLAVCLKHAQSPEF-KVYQNKVVSNCRALASRLVE--LGYKLVSGGS-DNHLVLVDLR  403 (520)
Q Consensus       334 -----~~~p-~~~g~p~~~~iaala~al~~~~~~~~-~~~~~~i~~na~~l~~~L~~--~G~~v~~~gt-~~~~~~vd~~  403 (520)
                           ..+. ..+++......+|+ .+|+.+.+++. ....++.....+.+.+.|.+  ..++.+..-. ...+.-+++.
T Consensus       679 ~~~~~~~~hg~Ty~gnpl~cAaal-a~L~~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~  757 (817)
T PLN02974        679 PSKLDALLHGHSYTAHPMGCAAAA-KALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLALELD  757 (817)
T ss_pred             ccccCCcccCCCCCcCHHHHHHHH-HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEeeeeEEEEEEe
Confidence                 1122 22333333333333 35777665432 22223333333334444421  1122222100 1123334443


Q ss_pred             CC----CCC---HHHHHHHHh-hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          404 PM----GID---GARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       404 ~~----g~~---~~~~~~~L~-~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      ..    +.+   +..+.+.+. +.||.++..          .+.||+-.|.+++    ++|++++.+.+.+.+
T Consensus       758 ~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~----------Gnvi~l~pP~~i~----~e~l~~~~~~l~~~~  816 (817)
T PLN02974        758 AEGSGSGYSSLYARSVVRRLRREDGIYARPL----------GNVVYLMCGPTTS----PETCTRLLRKVYRRL  816 (817)
T ss_pred             cCCcccccchHHHHHHHHHHHHhCCEEEEec----------CCEEEEeCCCCCC----HHHHHHHHHHHHHHh
Confidence            21    111   234666677 899998531          2468886666654    899999999998765

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.35  E-value=0.00017  Score=73.42  Aligned_cols=198  Identities=20%  Similarity=0.168  Sum_probs=108.5

Q ss_pred             ecCChHHHHHHHHHhhC------CCCC--EEEEcCCCCCccccccccccccccccccceEEEEEcccC---CCC---CCC
Q 010008          164 QPLSGSPANFEVYTAIL------KPHD--RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD---EST---GLV  229 (520)
Q Consensus       164 ~~~sGs~A~~~~l~all------~pGD--~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d---~~~---~~i  229 (520)
                      ...|||+||..++..-.      .|-+  .++.+.-.|.|+- .|.      +...+  ......+.+   |+.   ..-
T Consensus       121 f~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~t-lga------ls~~~--~s~y~~~~~p~~p~v~~~~yn  191 (433)
T KOG1401|consen  121 FCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRT-LGA------LSVTG--NSKYGLPFDPIAPDVVTAEYN  191 (433)
T ss_pred             EecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcc-hhH------HHhhc--ccccCCCCCCCCCceeecccC
Confidence            45899999998875332      1223  3887776654431 121      11111  111111111   111   234


Q ss_pred             CHHHHHHHhhhcC--CcEEEEcC-CCCCCCC-----CHHHHHHHHHHhCCEEEEechhhcccccccc--cCCCCC-cccE
Q 010008          230 DYDMLEKTAILFR--PKLIIAGA-SAYPRDF-----DYPRMRQIADAVGALLMMDMAHISGLVAASV--VADPFK-YCDV  298 (520)
Q Consensus       230 D~d~le~~i~~~~--pklIi~~~-s~~p~~~-----d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~--~~~p~~-~aDi  298 (520)
                      |..++++.++.++  .-+||+.. -..++.+     -+..|+++|+++|++||.|+.+. |+.-.+.  ...-+. ..||
T Consensus       192 d~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~t-G~gR~g~~~a~e~~~~~PDI  270 (433)
T KOG1401|consen  192 DSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQT-GLGRLGYGWAQEYFGVTPDI  270 (433)
T ss_pred             CHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhh-CccccchHHHHHHhCcCCcc
Confidence            7899999998865  34566642 2233322     25688899999999999999854 4322111  011111 3588


Q ss_pred             EEeccCcccC-CCCceEEEeeCCCcchhhHHHhhcccCC---CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010008          299 VTTTTHKSLR-GPRGGMIFFKKDPVLGVELESAINNAVF---PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNC  374 (520)
Q Consensus       299 v~~S~hK~l~-GprgG~I~~~~~~~~~~~l~~~i~~~~~---p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na  374 (520)
                      .+..  |.|+ |...|...+++      ++.+.++..--   .+..++ +.....+-..+++++.++++   .+++.+.-
T Consensus       271 ~t~a--K~L~gGlPigA~~v~~------kV~~~i~~~~~l~hg~Tf~g-npLacsa~~~~l~~l~~~e~---~k~vs~~~  338 (433)
T KOG1401|consen  271 TTVA--KPLGGGLPIGATGVRD------KVAEMISPGDHLYHGGTFSG-NPLACSAGIKVLDELKDPET---LKNVSKIG  338 (433)
T ss_pred             eeeh--hhccCCceeEEEeehH------HHHhhcCCCCccccCcccCC-ChhhhhHHHHHHHHHcCHHH---HHHHHHHH
Confidence            7766  9885 44558888887      67777765432   112222 22233333446788777665   34444445


Q ss_pred             HHHHHHHHH
Q 010008          375 RALASRLVE  383 (520)
Q Consensus       375 ~~l~~~L~~  383 (520)
                      +.|.+.|.+
T Consensus       339 k~L~~~l~e  347 (433)
T KOG1401|consen  339 KELRKLLDE  347 (433)
T ss_pred             HHHHHHHHH
Confidence            555555544

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=98.27  E-value=7.5e-05  Score=76.91  Aligned_cols=254  Identities=15%  Similarity=0.104  Sum_probs=122.0

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC---
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---  180 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all---  180 (520)
                      +-.|.|.+++...+... ....+. .+  .++   ...++ .+++.++++-..+.   .....||++|+..++....   
T Consensus        32 h~~p~i~~ai~~~~~~~-~~~~~~-~~--~~~---~~~~l-a~~L~~~~p~~~~~---v~f~~sGseAve~Alkla~~~~  100 (339)
T PF00202_consen   32 HNHPEIAEAIAEQANKL-NYVSFS-GF--THP---EAAEL-AEKLAELFPGGLDR---VFFANSGSEAVEAALKLARQYH  100 (339)
T ss_dssp             BT-HHHHHHHHHHHHHC-SSCSTT-TS--EEH---HHHHH-HHHHHHHSSTTEEE---EEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCccccchhHHHHhhhc-cccccc-ce--ecc---chhhh-hhhhhhccccccce---eeeccCchHHHHHHHHHhhccc
Confidence            34688888887766432 211111 11  112   22222 36778888332221   2345799999998876433   


Q ss_pred             ----CCC-CEEEEcCCCCCccccccccc------cccccccccceEEEEEcccCCCC---CCCCHHHHHHHhh---hcCC
Q 010008          181 ----KPH-DRIMGLDLPHGGHLSHGFMT------PKRRVSGTSIYFESMPYRLDEST---GLVDYDMLEKTAI---LFRP  243 (520)
Q Consensus       181 ----~pG-D~Vl~~~~~~~ghls~g~~~------~~~~v~~~g~~~~~v~~~~d~~~---~~iD~d~le~~i~---~~~p  243 (520)
                          .+| .+|+...-.|.|.-. +...      .+....-....+..++++-. ..   ..-..+.+++.+.   ..+.
T Consensus       101 ~~~~~~~r~~il~~~~~yHG~t~-~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i  178 (339)
T PF00202_consen  101 NKRAYTGRRKILAFEGSYHGRTL-GALSLTGNPPYRKGFGPLYPGVVFVPFPDP-AADEEEQACLNALEELIAALNADEI  178 (339)
T ss_dssp             HHTHHHTTTEEEEETTTB-TSSH-HHHHHSSSTHHHTTTCSSSTTEEEEETTCH-HHHHHHHHHHHHHHHHHHHHHGGGE
T ss_pred             ccccccCCceEEEeeeeeeccCc-ccccccCCccccccccccccccccccCCcc-chhhhHHHHHHHHHHHHHhhcCCcE
Confidence                233 688888766544311 1000      00000000011122232210 00   0001112333332   2234


Q ss_pred             cEEEEcCC-CC-CC----CCCHHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEeccCcccCC-CCce
Q 010008          244 KLIIAGAS-AY-PR----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG-PRGG  313 (520)
Q Consensus       244 klIi~~~s-~~-p~----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S~hK~l~G-prgG  313 (520)
                      .+||+..- .. +.    ..-+++|+++|+++|+++|+|+.+. |+--.|..-  .... ..|+++++  |.|.| ...|
T Consensus       179 aavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~t-G~gRtG~~~a~~~~gv~PDiv~~g--K~l~gG~p~s  255 (339)
T PF00202_consen  179 AAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQT-GFGRTGKFFASEHYGVDPDIVTFG--KGLGGGLPIS  255 (339)
T ss_dssp             EEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTT-TTTTTSSSSGHHHHTSSSSEEEEE--GGGGTTSSEE
T ss_pred             EEEEEeccccccCccccccchhhehcccccccccceecccccc-cccccCCccceecccccCcccccc--cchhhhhhcc
Confidence            56777632 11 11    2237999999999999999999854 432112100  0001 36999987  99954 4448


Q ss_pred             EEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Q 010008          314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE  383 (520)
Q Consensus       314 ~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~  383 (520)
                      .+++++      ++.+.+.......+.++......+++ ..|+.+.++++   .+++.+..++|.+.|++
T Consensus       256 av~~~~------~i~~~~~~~~~~~T~~g~p~~~aaa~-~~l~~~~~~~~---~~~~~~~g~~l~~~L~~  315 (339)
T PF00202_consen  256 AVLGSE------EIMEAFQPGSHGSTFGGNPLSCAAAL-ATLEILEEEDL---LERVRELGERLREGLRE  315 (339)
T ss_dssp             EEEEEH------HHHTTSCTTSSTCTTTT-HHHHHHHH-HHHHHHHHTTH---HHHHHHHHHHHHHHHHH
T ss_pred             cccccc------hhhccccccccccccccchHhhhhhh-hHHHhhccHHH---HHHHHHHHHHHHHHHHH
Confidence            888888      67666644333333444333333333 35666554433   34455555666665544

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=98.26  E-value=0.00043  Score=67.59  Aligned_cols=340  Identities=19%  Similarity=0.200  Sum_probs=170.7

Q ss_pred             ccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHH
Q 010008           94 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  173 (520)
Q Consensus        94 ~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~  173 (520)
                      +.|+-.+--.-..|.|.+|....+..-.    ...||.     -|++-+-++.....+-+++     +...+.|||+||.
T Consensus        51 DCInNVaHvghchp~VV~A~~kQmat~~----tN~RFl-----hd~lv~cA~~l~stlPeLs-----vc~F~NSGSEAND  116 (452)
T KOG1403|consen   51 DCINNVAHVGHCHPEVVRAGAKQMATIS----TNNRFL-----HDELVQCARTLTSTLPELS-----VCFFVNSGSEAND  116 (452)
T ss_pred             HHhhhhhhcccCCHHHHHHHHHHHhHhc----ccchhh-----HHHHHHHHHHHhhcCCCce-----EEEEecCCchhhH
Confidence            4455555555567888887665554221    223432     2455533333333333433     4556789999999


Q ss_pred             HHHHhh--CCCCCEEEEcCCCCCcccccccccccccccccc-----ceEEEEEccc------C----C--CCCCCCHHHH
Q 010008          174 EVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS-----IYFESMPYRL------D----E--STGLVDYDML  234 (520)
Q Consensus       174 ~~l~al--l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g-----~~~~~v~~~~------d----~--~~~~iD~d~l  234 (520)
                      +++.-.  ......|++++..|.||++.-.....-+.+--+     -|+.+-+.|-      .    +  +.+..=.|.+
T Consensus       117 LALRLAR~ftkhqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~v  196 (452)
T KOG1403|consen  117 LALRLARNFTKHQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPV  196 (452)
T ss_pred             HHHHHHHhhcccCceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCcccchhhhhhHH
Confidence            888643  223444666777788887543210000010000     1111111110      0    0  0011112445


Q ss_pred             HHHhhhc--CCcE---EEEc--CCCCCCCC----CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC----cccEE
Q 010008          235 EKTAILF--RPKL---IIAG--ASAYPRDF----DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVV  299 (520)
Q Consensus       235 e~~i~~~--~pkl---Ii~~--~s~~p~~~----d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~----~aDiv  299 (520)
                      ++++...  +-..   .|..  .|.-+.++    -++.+.+..+.+|-..|.|+.|. |+--.|.+-+.+.    -.|||
T Consensus       197 k~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQv-GFGRvG~hyWafq~y~fiPDIV  275 (452)
T KOG1403|consen  197 KEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQV-GFGRVGSHYWAFQTYNFIPDIV  275 (452)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhh-cccccchhhhhhhhhccccchh
Confidence            5555432  1111   1221  12222233    36777888888999999999864 4333333444443    25788


Q ss_pred             EeccCccc-CCCCceEEEeeCCCcchhhHHHhhccc---CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q 010008          300 TTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNA---VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCR  375 (520)
Q Consensus       300 ~~S~hK~l-~GprgG~I~~~~~~~~~~~l~~~i~~~---~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~  375 (520)
                      +..  |.+ .|...+.+.+.+      ++.+.+...   .|. ..||.......++++ ++.+..+.+.+..+++-+...
T Consensus       276 tmg--KpmGNGhPVa~Vattk------eIA~Af~atgv~YFN-TyGGnPVsCAv~laV-m~v~e~E~Lq~ha~~vG~~L~  345 (452)
T KOG1403|consen  276 TMG--KPMGNGHPVAAVATTK------EIAQAFHATGVEYFN-TYGGNPVSCAVGLAV-MRVCEDENLQEHAQQVGEKLE  345 (452)
T ss_pred             eec--ccCCCCCeeeEEeccH------HHHHHhccccceehh-ccCCCchhHHHHHHH-HHHHhhhhHHHHHHHHHHHHH
Confidence            765  877 455668888888      677766541   233 345545544445543 555444344444444433333


Q ss_pred             HHHHHHHHCCCEEecCCCCCeeEE-EEecCCC---C-CHHH---HHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCC
Q 010008          376 ALASRLVELGYKLVSGGSDNHLVL-VDLRPMG---I-DGAR---VEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPA  446 (520)
Q Consensus       376 ~l~~~L~~~G~~v~~~gt~~~~~~-vd~~~~g---~-~~~~---~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~  446 (520)
                      .+...++. ..+++.+-..-.++| +|+-...   . +.++   +...| +.++|.++.. -|      ...-+.|-.| 
T Consensus       346 ~lL~~~k~-kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaD-GP------h~NilKiKPP-  416 (452)
T KOG1403|consen  346 VLLRRLKQ-KHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSAD-GP------HRNILKIKPP-  416 (452)
T ss_pred             HHHHHHhh-hccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecC-CC------CCceeecCCC-
Confidence            33333332 345554322223333 4542211   1 1122   33344 4578998643 12      2345666533 


Q ss_pred             ccccCCCHHHHHHHHHHHHHHHHH
Q 010008          447 MTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       447 ~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      ++   +++++.++++..+++++..
T Consensus       417 mC---Fneena~e~v~~ld~iLT~  437 (452)
T KOG1403|consen  417 MC---FNEENADEFVLGLDEILTV  437 (452)
T ss_pred             cc---cChhhHHHHHHHHHHHHHH
Confidence            44   7899999999999999874

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=98.24  E-value=1.5e-05  Score=79.60  Aligned_cols=283  Identities=13%  Similarity=0.082  Sum_probs=139.6

Q ss_pred             HHHHHHHHHHHHHHHcCCC-CCCCceeeecCChH-HHHHHHHHhhCCC----C--CEEEEcCCCCCcccccccccccccc
Q 010008          137 IDELETLCQKRALAAFNLD-ENKWGVNVQPLSGS-PANFEVYTAILKP----H--DRIMGLDLPHGGHLSHGFMTPKRRV  208 (520)
Q Consensus       137 ~d~lE~~a~~~~~~lfg~~-~~~~~~~V~~~sGs-~A~~~~l~all~p----G--D~Vl~~~~~~~ghls~g~~~~~~~v  208 (520)
                      ..+||+.. .++.++.|=- .+.-  .|.+.+|+ +.+++++.||...    +  -.|+...|-|...     ...+. .
T Consensus        45 s~eL~~~I-r~LH~~VGNAvt~gr--~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y-----~~qt~-~  115 (363)
T PF04864_consen   45 SPELERQI-RRLHRVVGNAVTDGR--YIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSY-----PEQTD-F  115 (363)
T ss_dssp             -HHHHHHH-HHHHHHH-SB--TTS--EEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHH-----HHHCC-C
T ss_pred             cHHHHHHH-HHHHHHhccccccCc--EEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccch-----HHHHH-h
Confidence            45777544 4677777632 2222  34567888 8888899888422    2  2677766644322     11110 0


Q ss_pred             ccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEE-EEcCCCCCCCCCHHHHHH-HHHHhCCEEEEechhhcccccc
Q 010008          209 SGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI-IAGASAYPRDFDYPRMRQ-IADAVGALLMMDMAHISGLVAA  286 (520)
Q Consensus       209 ~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklI-i~~~s~~p~~~d~~~i~~-ia~~~g~~li~D~Ah~~gli~~  286 (520)
                       +.+..|+.   .-|...+. +-+       . ....| ++++||||.-    .|++ +.+..+..+|.|-|+|.-..  
T Consensus       116 -f~s~~y~w---~Gda~~~~-~~~-------~-~~~~IElVTSPNNPDG----~lr~~V~~g~~~k~I~D~AYYWPhy--  176 (363)
T PF04864_consen  116 -FDSRLYKW---AGDASNFK-NSD-------N-PSPYIELVTSPNNPDG----QLREAVLNGSSGKVIHDLAYYWPHY--  176 (363)
T ss_dssp             -T-BTTEEE---EEECCCGT-T-S---------CCGEEEEEESS-TTT----------SSTTTEEEEEEE-TT-STTT--
T ss_pred             -ccccCccc---cccHHhhc-cCC-------C-CCCeEEEEeCCCCCcc----cccchhcCCCCcceeeeeeeecccc--
Confidence             11111221   11222221 100       0 12334 6778999851    1222 33555677899999764432  


Q ss_pred             cccCCCCC-cccEEEeccCcc--cCCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc----
Q 010008          287 SVVADPFK-YCDVVTTTTHKS--LRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ----  359 (520)
Q Consensus       287 ~~~~~p~~-~aDiv~~S~hK~--l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~----  359 (520)
                        .|.+-+ .-||+.||++|.  .+|-|.||.+.+++     +..+++...+.-...|...-.++-++- -|+.+.    
T Consensus       177 --TpI~~~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~-----~Va~kM~~y~~lnTiGvS~dsQLRa~k-iLk~v~~~~~  248 (363)
T PF04864_consen  177 --TPITAPADHDIMLFTLSKLTGHAGSRFGWALVKDE-----EVAKKMTKYMELNTIGVSRDSQLRALK-ILKVVLDGYG  248 (363)
T ss_dssp             --S---S-B--SEEEEEHHHHCS-GGG-EEEEEES-H-----HHHHHHHHHHHHHCSS--HHHHHHHHH-HHHHHHHHCC
T ss_pred             --cccCCCCCCceEEEEEecccCccccccceeeecCH-----HHHHHHHHHHHHhcccCcHHHHHHHHH-HHHHHHhccc
Confidence              111111 347999999994  36778899999986     666665543332334544444444332 122211    


Q ss_pred             Cc----hhHHHH-HHHHHHHHHHHHHHHHC-CCEEec--CC----------CCCeeEEEEecCCCCCHHHHHHHHhhcCe
Q 010008          360 SP----EFKVYQ-NKVVSNCRALASRLVEL-GYKLVS--GG----------SDNHLVLVDLRPMGIDGARVEKILDMASI  421 (520)
Q Consensus       360 ~~----~~~~~~-~~i~~na~~l~~~L~~~-G~~v~~--~g----------t~~~~~~vd~~~~g~~~~~~~~~L~~~gI  421 (520)
                      ..    .+=++. +...++-+.|.+.+... -|.+..  ++          ...-+.|+.+...+  .++++..|++.||
T Consensus       249 ~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~ee--d~DC~~~l~~~~I  326 (363)
T PF04864_consen  249 TEKGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREE--DEDCYAVLREAKI  326 (363)
T ss_dssp             HHTTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSCG--GSSHHHHHHCTTE
T ss_pred             CCCCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCcc--cccHHHHHHhCCc
Confidence            00    121222 23333445566666542 233321  10          11236788776432  2568999999999


Q ss_pred             EEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          422 TLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       422 ~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      ..+.+...|.    .+.++|||+.      .+++||+.+.+.|..+
T Consensus       327 ~tr~G~~fga----~~ryVRlSml------~~~d~Fd~l~~rL~~l  362 (363)
T PF04864_consen  327 ITRSGVLFGA----DSRYVRLSML------KRDDDFDQLLERLSKL  362 (363)
T ss_dssp             EEEEGGGGTS-----TTEEEEESS------S-HHHHHHHHHHHHCC
T ss_pred             ccCCCCccCC----CCCeEEEecc------CCHHHHHHHHHHHHhh
Confidence            9976643332    4679999964      4589999999888643

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=97.72  E-value=0.0012  Score=65.89  Aligned_cols=207  Identities=19%  Similarity=0.269  Sum_probs=115.4

Q ss_pred             HHHHHHHhhhcC----C-cEEEEc------CCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccc--c-CCCCC-c
Q 010008          231 YDMLEKTAILFR----P-KLIIAG------ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASV--V-ADPFK-Y  295 (520)
Q Consensus       231 ~d~le~~i~~~~----p-klIi~~------~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~--~-~~p~~-~  295 (520)
                      ++++|++|..++    | ..||+.      .-|.....-+..+++|+++||+.+|+|+.|.-|-.-+..  + ...++ -
T Consensus       255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~P  334 (484)
T KOG1405|consen  255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSP  334 (484)
T ss_pred             HHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCC
Confidence            577888887654    3 245553      122223445889999999999999999988643221111  0 11122 2


Q ss_pred             ccEEEeccCcccCCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q 010008          296 CDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCR  375 (520)
Q Consensus       296 aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~  375 (520)
                      .|+|++|  |-|.  -||+ +.++      ++.-.--...|..+.|-|.-..+..  ..++++..   +...+++..--+
T Consensus       335 pD~vTFS--KK~q--~gGf-fh~~------~frpn~pYrifNTWmGdP~k~lll~--~vv~~I~~---~~Ll~n~~~vG~  398 (484)
T KOG1405|consen  335 PDVVTFS--KKFQ--TGGF-FHDE------EFRPNEPYRIFNTWMGDPSKNLLLE--EVVQEIKR---EDLLNNVAHVGK  398 (484)
T ss_pred             ccceehh--hhhh--cCcc-ccCc------ccCCCchHHHhhhhcCChHHHHHHH--HHHHHHhH---HHHHHHHHHHHH
Confidence            7999887  6552  2452 3333      3332222234666677766544443  23455443   233444444455


Q ss_pred             HHHHHHHHC-----C-CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccc
Q 010008          376 ALASRLVEL-----G-YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTT  449 (520)
Q Consensus       376 ~l~~~L~~~-----G-~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt  449 (520)
                      .|...|.++     | +.-. .|. ..+..||+.... -.+.+...+...|+.+..         .+...||+- |.++ 
T Consensus       399 ~l~~gL~~Lq~~~p~~~~~~-RGr-GTF~a~d~ps~~-~Rdk~i~~~~~nGv~~GG---------Cg~~siRfR-PsLv-  464 (484)
T KOG1405|consen  399 ALLKGLLELQAKYPGKINNL-RGR-GTFIAWDCPSGS-IRDKLILIARLNGVNLGG---------CGDKSIRFR-PSLV-  464 (484)
T ss_pred             HHHHHHHHHHHhCchhhhcc-ccc-ceEEEEeCCChH-HHHHHHHHHHHcCceecc---------cccceeeec-ccee-
Confidence            666666542     1 1111 232 235677886422 235567777889988843         234568874 3344 


Q ss_pred             cCCCHHHHHHHHHHHHHHHH
Q 010008          450 RGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       450 ~g~~~~d~~~la~~i~~~l~  469 (520)
                        +.+...+.+.+.+++++.
T Consensus       465 --f~~~Ha~i~l~~~~k~l~  482 (484)
T KOG1405|consen  465 --FRKHHADIFLDIFDKILA  482 (484)
T ss_pred             --ehhhhHHHHHHHHHHHhc
Confidence              557777788888877664

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=97.54  E-value=0.00025  Score=64.18  Aligned_cols=54  Identities=15%  Similarity=0.093  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHcC--C--CCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCc
Q 010008          138 DELETLCQKRALAAFN--L--DENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGG  195 (520)
Q Consensus       138 d~lE~~a~~~~~~lfg--~--~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~g  195 (520)
                      .++.+...+++.+.+|  +  +++    +|.+++|+ +|+..++.++++|||.|++++|.|.|
T Consensus        95 ~~lR~AiA~~l~~~~g~~v~~~pd----~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~~  153 (153)
T PLN02994         95 ANFRKAIANFMAEARGGRVKFDAD----MIVLSAGATAANEIIMFCIADPGDAFLVPTPYYAA  153 (153)
T ss_pred             HHHHHHHHHHHHHHhCCCCccchh----heEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence            4566667789999988  3  454    56678888 89999999999999999999997653

>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]

Probab=97.27  E-value=0.0094  Score=58.10  Aligned_cols=329  Identities=16%  Similarity=0.221  Sum_probs=170.6

Q ss_pred             ccceEecCCCCChHHHHHHHhhhhhccCCCCC----CCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH
Q 010008           94 KSLELIASENFTSRAVMEAVGSCLTNKYSEGL----PGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS  169 (520)
Q Consensus        94 ~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~----p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs  169 (520)
                      ..+++.|+.--+|..|++.++..+.|--.-|.    -..|   +.++...++ .+...+.+|++++.. +.+...-.+|+
T Consensus         7 ~vvnFaaGPAklp~~VL~e~qkdl~n~~g~GisV~EmSHR---sk~f~kii~-~tes~lreLlniPdn-~~vlf~QGGGt   81 (370)
T KOG2790|consen    7 RVVNFAAGPAKLPESVLLEAQKDLLNFNGSGISVMEMSHR---SKDFAKIIN-DTESLLRELLNIPDN-YKVLFLQGGGT   81 (370)
T ss_pred             ceeecCCCcccCCHHHHHHHHHHhhccCCCcceEEEeccc---chhHHHHHH-HHHHHHHHHHcCCCc-eeEEEEeCCCc
Confidence            56888888888999999998888876543332    1233   233333443 345778899999754 32333335666


Q ss_pred             HHHHHHHHhh--CCCC---CEEEEcCCCCCccccccccccccccccccce--EEEEEcccCCCC--CCCCHHHHHHHhhh
Q 010008          170 PANFEVYTAI--LKPH---DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY--FESMPYRLDEST--GLVDYDMLEKTAIL  240 (520)
Q Consensus       170 ~A~~~~l~al--l~pG---D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~--~~~v~~~~d~~~--~~iD~d~le~~i~~  240 (520)
                      .-..++...|  ++.|   |.|+.-+...            ++..-+.++  ...+..+..+.+  ..+|.+.++...  
T Consensus        82 ~qFaAv~lNL~glK~g~~AdYiVTGsWS~------------KA~~EAkk~~~~~~V~~~~k~y~ygkvPd~~~w~~~~--  147 (370)
T KOG2790|consen   82 GQFAAVPLNLIGLKHGRCADYVVTGSWSA------------KAAEEAKKYGTPNIVIPKLKSYTYGKVPDPSTWELNP--  147 (370)
T ss_pred             ccccccchhhhccccCCccceEEeccccH------------HHHHHHHhhCCceEEeccccccccCcCCChhhcccCC--
Confidence            4444454554  3555   5555432210            001001111  122222222222  245655543211  


Q ss_pred             cCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCcccCCCCc-eEEEe
Q 010008          241 FRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFF  317 (520)
Q Consensus       241 ~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l~Gprg-G~I~~  317 (520)
                       +.+.+..+....-.-..++.+- +-.-+|+++++|++  +.++.     .|++  .-+++.....|.. ||-| -+++.
T Consensus       148 -da~yvyyCaNETVHGVEf~~~P-~~~~~~~vlVaDmS--SnflS-----rpvDvsk~gvi~aGAQKN~-G~aG~Tvviv  217 (370)
T KOG2790|consen  148 -DASYVYYCANETVHGVEFDFIP-VNDPKGAVLVADMS--SNFLS-----RPVDVSKFGVIFAGAQKNV-GPAGVTVVIV  217 (370)
T ss_pred             -CccEEEEecCceeeceecCCCC-CCCCCCceEEEecc--cchhc-----CCccchhcceEEecccccc-CccccEEEEE
Confidence             2344544322110001111110 11346999999985  34332     2332  3457888899986 5666 66677


Q ss_pred             eCCCcchhhHHHhhcc---cCC--------CCCCCCChHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHHHHH-C
Q 010008          318 KKDPVLGVELESAINN---AVF--------PGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASRLVE-L  384 (520)
Q Consensus       318 ~~~~~~~~~l~~~i~~---~~~--------p~~~g~p~~~~iaala~al~~~~~~~-~~~~~~~i~~na~~l~~~L~~-~  384 (520)
                      ++      ++..+...   .++        ..+..+|....|..+...|+.+++.+ .++..+.-.+.++.+.+.+.+ .
T Consensus       218 r~------dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~s~  291 (370)
T KOG2790|consen  218 RK------DLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAIDNSN  291 (370)
T ss_pred             eh------hhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            77      33332211   111        11234555555656666677666544 467777777888999999987 4


Q ss_pred             CCEEec--CCCCCee-EEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHH
Q 010008          385 GYKLVS--GGSDNHL-VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA  461 (520)
Q Consensus       385 G~~v~~--~gt~~~~-~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la  461 (520)
                      ||-...  +...+.+ +.+.+.+..+..+.+.+..++.=|.+     -|+.+   -||||.|+-  +  .++-++.+.++
T Consensus       292 gfy~cpVe~~~RS~MNV~Fri~~d~Le~eFLkeA~~~~mv~L-----KGhRS---VGGiRASlY--N--Aisv~~~q~L~  359 (370)
T KOG2790|consen  292 GFYRCPVEPSVRSRMNVPFRIEKDELEAEFLKEAAKEHMVQL-----KGHRS---VGGIRASLY--N--AISVEEVQKLA  359 (370)
T ss_pred             CeEEcccchhhhhhcccceeecchHHHHHHHHHHHHhhhhcc-----ccccc---cccchhhhh--c--cccHHHHHHHH
Confidence            765432  1111222 12233333333344444444333332     34433   578998863  2  25689999999


Q ss_pred             HHHHHHHH
Q 010008          462 DFIHEGVE  469 (520)
Q Consensus       462 ~~i~~~l~  469 (520)
                      .++++..+
T Consensus       360 ~~m~~F~k  367 (370)
T KOG2790|consen  360 AFMKEFQK  367 (370)
T ss_pred             HHHHHHHH
Confidence            99987654

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=97.05  E-value=0.08  Score=57.15  Aligned_cols=201  Identities=16%  Similarity=0.180  Sum_probs=112.8

Q ss_pred             CcEEEEcCCCCC-CCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEEEeccCcc-----cCCCCceEE
Q 010008          243 PKLIIAGASAYP-RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKS-----LRGPRGGMI  315 (520)
Q Consensus       243 pklIi~~~s~~p-~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S~hK~-----l~GprgG~I  315 (520)
                      ...|++-+|..- .+.|+.++.+.|++.|..+++-    ..+.+.-....|-+ |+||+++|....     +.||..||.
T Consensus       248 v~gvlvQYP~t~G~i~d~~el~~~a~~~~s~vv~a----tDLLaLtiLrpPgefGaDIavGSsQRFGVPlGYGGPHAaFf  323 (1001)
T KOG2040|consen  248 VSGVLVQYPDTEGSVLDFDELVELAHANGSLVVMA----TDLLALTILRPPGEFGADIAVGSSQRFGVPLGYGGPHAAFF  323 (1001)
T ss_pred             eeEEEEEcCCCCCcccCHHHHHHHhhccCceEEEe----ehhhHHHccCChhhcCceeeeccccccCccccCCCchHHHH
Confidence            455677777644 4889999999999999887652    23333333344555 899999999874     367777777


Q ss_pred             EeeCCC-----------------cchhhH-----HHhhcccCCCCCCCCChHHHHHHHHHHHH-HhcCchhHHHHHHHHH
Q 010008          316 FFKKDP-----------------VLGVEL-----ESAINNAVFPGLQGGPHNHTIGGLAVCLK-HAQSPEFKVYQNKVVS  372 (520)
Q Consensus       316 ~~~~~~-----------------~~~~~l-----~~~i~~~~~p~~~g~p~~~~iaala~al~-~~~~~~~~~~~~~i~~  372 (520)
                      .+++..                 ...+.+     ++.|++-.-....++ .-..+|-+++-+. .....++++..+++..
T Consensus       324 Av~~~l~R~mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKATSNICT-AQALLANmaAmyaiYHGp~gL~~IArrvh~  402 (1001)
T KOG2040|consen  324 AVSESLVRMMPGRIIGVTKDALGKEAYRLALQTREQHIRRDKATSNICT-AQALLANMAAMYAIYHGPHGLKEIARRVHN  402 (1001)
T ss_pred             HHHHHHHhhCCCceEeeeecccccHHHHHHHHHHHHHhhhhccchhhhH-HHHHHHHHHHHHhhhcCcHHHHHHHHHHHH
Confidence            665521                 000111     111221110000011 0001111111111 1223456888899999


Q ss_pred             HHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCC
Q 010008          373 NCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGF  452 (520)
Q Consensus       373 na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~  452 (520)
                      ....|...|+..|.+++..   .++-.+.++- +-+.+++...-.+.+|-.+.         +..+.|-+++..-    .
T Consensus       403 ~T~~l~~~l~~aghel~~k---~fFDTLkI~~-~~s~~~~l~rA~~~~iNlr~---------~ed~tigvslDET----v  465 (1001)
T KOG2040|consen  403 LTLILAEGLKNAGHELQHK---PFFDTLKIRC-GCSAEEVLDRAAKRQINLRL---------VEDGTIGVSLDET----V  465 (1001)
T ss_pred             HHHHHHHHHhhcchhhccc---cccceEEEEe-cCcHHHHHHHHHhhcCceEE---------eecCceEEeeccc----c
Confidence            9999999999888777653   2332333332 22456655555555565532         1234455665543    3


Q ss_pred             CHHHHHHHHHHHH
Q 010008          453 SEKEFVAIADFIH  465 (520)
Q Consensus       453 ~~~d~~~la~~i~  465 (520)
                      +++|++.+...+.
T Consensus       466 ~~~DvddLl~vf~  478 (1001)
T KOG2040|consen  466 TEKDVDDLLWVFN  478 (1001)
T ss_pred             cHHHHHHHHHHHc
Confidence            4899999888876

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=95.75  E-value=0.24  Score=48.07  Aligned_cols=112  Identities=21%  Similarity=0.265  Sum_probs=74.6

Q ss_pred             CCCCHHHHHHHhhhcCCcEEEEcCCC----CCC-CCCHHHHHHHHHHhCCEEEEechhhcccccccccC-----CCCCcc
Q 010008          227 GLVDYDMLEKTAILFRPKLIIAGASA----YPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA-----DPFKYC  296 (520)
Q Consensus       227 ~~iD~d~le~~i~~~~pklIi~~~s~----~p~-~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~-----~p~~~a  296 (520)
                      ..-|++.+++.+.+..+..|++-.+.    -|+ +.++++|+.||..|+++-++..|+  |+-......     --....
T Consensus       139 l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnay--glqsee~i~~iaa~~~~gri  216 (432)
T KOG3843|consen  139 LITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAY--GLQSEECIHKIAAAAECGRI  216 (432)
T ss_pred             HHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhcccc--ccchHHHHHHHHHHhhhccH
Confidence            45689999999988778866664332    244 567999999999999999999874  322111000     001136


Q ss_pred             cEEEeccCcccCCCCceEEEee-CCCcchhhHHHhhcccCCCCC-CCCChHH
Q 010008          297 DVVTTTTHKSLRGPRGGMIFFK-KDPVLGVELESAINNAVFPGL-QGGPHNH  346 (520)
Q Consensus       297 Div~~S~hK~l~GprgG~I~~~-~~~~~~~~l~~~i~~~~~p~~-~g~p~~~  346 (520)
                      |.++-|+.|.|.-|-||.|+.. ++     .+.+.|.+. +||- ...|+..
T Consensus       217 da~vqsldknf~vpvggaiia~fk~-----n~iq~iak~-ypgrasa~ps~d  262 (432)
T KOG3843|consen  217 DAFVQSLDKNFMVPVGGAIIAAFKD-----NFIQEIAKM-YPGRASASPSLD  262 (432)
T ss_pred             HHHHHHhhhcceeecchhHhhHhHH-----HHHHHHHHh-CCCccccCccHH
Confidence            8899999999999999766542 32     566666554 6665 3344443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	520
3ou5_A	490	Human Mitochondrial Serine Hydroxymethyltransferase		1e-163
1bj4_A	470	Recombinant Serine Hydroxymethyltransferase (human)		1e-158
1ls3_B	483	Crystal Structure Of The Complex Between Rabbit Cyt		1e-157
1cj0_A	470	Crystal Structure Of Rabbit Cytosolic Serine Hydrox		1e-156
1rvu_A	483	E75q Mutant Of Rabbit Cytosolic Serine Hydroxymethy		1e-156
1rv3_A	483	E75l Mutant Of Rabbit Cytosolic Serine Hydroxymethy		1e-156
1eji_A	478	Recombinant Serine Hydroxymethyltransferase (Mouse)		1e-150
1kkj_A	419	Crystal Structure Of Serine Hydroxymethyltransferas		1e-105
1yjs_A	419	K226q Mutant Of Serine Hydroxymethyltransferase Fro		1e-104
2vi8_A	405	Crystal Structure Of S172absshmt Internal Aldimine		1e-104
2vgs_A	407	Crystal Structure Of E53qbsshmt Internal Aldimine L		1e-104
2w7d_A	405	Crystal Structure Of Y51fbsshmt Internal Aldimine L		1e-104
2vmv_A	405	Crystal Structure Of F351gbsshmt Internal Aldimine		1e-104
1yjy_A	419	K226m Mutant Of Serine Hydroxymethyltransferase Fro		1e-104
2vmn_A	405	Crystal Structure Of N341absshmt Internal Aldimine		1e-104
2w7i_A	405	Crystal Structure Of Y61absshmt Internal Aldimine L		1e-104
2vmr_A	405	Crystal Structure Of Y60absshmt Internal Aldimine L		1e-104
2dkj_A	407	Crystal Structure Of T.Th.Hb8 Serine Hydroxymethylt		1e-103
3ecd_A	425	Crystal Structure Of Serine Hydroxymethyltransferas		1e-102
3pgy_A	415	Serine Hydroxymethyltransferase From Staphylococcus		1e-101
3h7f_A	447	Crystal Structure Of Serine Hydroxymethyltransferas		1e-99
1dfo_A	417	Crystal Structure At 2.4 Angstrom Resolution Of E.		3e-97
1eqb_A	417	X-Ray Crystal Structure At 2.7 Angstroms Resolution		8e-97
3g8m_A	417	Serine Hydroxymethyltransferase Y55f Mutant Length		8e-97
3n0l_A	417	Crystal Structure Of Serine Hydroxymethyltransferas		5e-94
3gbx_A	420	Serine Hydroxymethyltransferase From Salmonella Typ		7e-92

>pdb|3OU5|A Chain A, Human Mitochondrial Serine Hydroxymethyltransferase 2 Length = 490

Iteration: 1
 Score =  572 bits (1473), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 274/456 (60%), Positives = 344/456 (75%), Gaps = 12/456 (2%)
Query: 73  SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 132
           SL ++DPE+ E++ +EK+RQ + LELIASENF SRA +EA+GSCL NKYSEG PGKRYYG
Sbjct: 34  SLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYG 93
Query: 133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 192
           G E +DE+E LCQ+RAL AF+LD  +WGVNVQP SGSPAN  VYTA+L+PHDRIMGLDLP
Sbjct: 94  GAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLP 153
Query: 193 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 252
            GGHL+HG+M+  +R+S TSI+FESMPY+L+  TGL+DY+ L  TA LFRP+LIIAG SA
Sbjct: 154 DGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSA 213
Query: 253 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 312
           Y R  DY RMR++ D V A L+ DMAHISGLVAA V+  PFK+ D+VTTTTHK+LRG R 
Sbjct: 214 YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARS 273
Query: 313 GMIFFKK-----DPVLGVEL----ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 363
           G+IF++K     DP  G E+    E  IN AVFP LQGGPHNH I  +AV LK A +P F
Sbjct: 274 GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMF 333
Query: 364 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITL 423
           + Y  +V+ N RA+A  L+E GY LVSGG+DNHLVLVDLRP G+DGAR E++L++ SIT 
Sbjct: 334 REYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITA 393
Query: 424 NKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKL 483
           NKN+ PGD+SA+ PGG+R+G+PA+T+R F E +F  + DFI EGV I LE K   + +KL
Sbjct: 394 NKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKS--KTAKL 451
Query: 484 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 519
           QDF +F+   +      +A+LR RVE     FP+PG
Sbjct: 452 QDFKSFLLK-DSETSQRLANLRQRVEQFARAFPMPG 486

>pdb|1BJ4|A Chain A, Recombinant Serine Hydroxymethyltransferase (human) Length = 470

Iteration: 1
 Score =  555 bits (1430), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 279/457 (61%), Positives = 343/457 (75%), Gaps = 12/457 (2%)
Query: 74  LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
           L ++D EV  II KE  RQ   LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG
Sbjct: 16  LKDSDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 75
Query: 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 193
            E+IDELETLCQKRAL A+ LD   WGVNVQP SGSPANF VYTA+++PH RIMGLDLP 
Sbjct: 76  TEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 135
Query: 194 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253
           GGHL+HGFMT K+++S TSI+FESMPY+++  TG ++YD LE+ A LF PKLIIAG S Y
Sbjct: 136 GGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCY 195
Query: 254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313
            R+ +Y R+R+IAD  GA LM DMAHISGLVAA VV  PF++C VVTTTTHK+LRG R G
Sbjct: 196 SRNLEYARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAG 255
Query: 314 MIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 364
           MIF++K     DP  G E    LES IN+AVFPGLQGGPHNH I G+AV LK A + EFK
Sbjct: 256 MIFYRKGVKSVDPATGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFK 315
Query: 365 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 424
           VYQ++VV+NCRAL+  L ELGYK+V+GGSDNHL+LVDLR  G DG R EK+L+  SI  N
Sbjct: 316 VYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 375
Query: 425 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQ-GSKL 483
           KN+ PGD+SAL P G+R+G+PA+T+RG  EK+F  +A FIH G+E+TL+ +      + L
Sbjct: 376 KNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVAATL 435
Query: 484 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
           ++F   +    +     V  LR  VE+  + FP+PG+
Sbjct: 436 KEFKERLAGDKYQAA--VQALREEVESFASLFPLPGL 470

>pdb|1LS3|B Chain B, Crystal Structure Of The Complex Between Rabbit Cytosolic Serine Hydroxymethyltransferase And Triglu-5-Formyl-Tetrahydrofolate Length = 483

Iteration: 1
 Score =  550 bits (1416), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 279/457 (61%), Positives = 342/457 (74%), Gaps = 11/457 (2%)
Query: 74  LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
           L ++D EV +II KE  RQ   LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG
Sbjct: 25  LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 84
Query: 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 193
            E+IDELETLCQKRAL A+ LD   WGVNVQP SGSPANF VYTA+++PH RIMGLDLP 
Sbjct: 85  TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 144
Query: 194 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253
           GGHL+HGFMT K+++S TSI+FESM Y+++  TG +DYD LE+ A LF PKLIIAG S Y
Sbjct: 145 GGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCY 204
Query: 254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313
            R+ DY R+R+IAD  GA LM DMAHISGLV A VV  PF++C VVTTTTHK+LRG R G
Sbjct: 205 SRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAG 264
Query: 314 MIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 364
           MIF+++     DP  G E    LES IN+AVFPGLQGGPHNH I G+AV LK A +PEFK
Sbjct: 265 MIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFK 324
Query: 365 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 424
            YQ +VV+NCRAL++ LVELGYK+V+GGSDNHL+LVDLR  G DG R EK+L+  SI  N
Sbjct: 325 EYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 384
Query: 425 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLV-QGSKL 483
           KN+ PGDKSAL P G+R+G+PA+T+RG  EK+F  +A FIH G+E+T++ +      + L
Sbjct: 385 KNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATL 444
Query: 484 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
           ++F   +   +      V  LR  VE+    FP+PG+
Sbjct: 445 KEFKEKLAG-DEKHQRAVRALRQEVESFAALFPLPGL 480

>pdb|1CJ0|A Chain A, Crystal Structure Of Rabbit Cytosolic Serine Hydroxymethyltransferase At 2.8 Angstrom Resolution Length = 470

Iteration: 1
 Score =  549 bits (1415), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 279/457 (61%), Positives = 342/457 (74%), Gaps = 11/457 (2%)
Query: 74  LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
           L ++D EV +II KE  RQ   LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG
Sbjct: 12  LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 71
Query: 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 193
            E+IDELETLCQKRAL A+ LD   WGVNVQP SGSPANF VYTA+++PH RIMGLDLP 
Sbjct: 72  TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 131
Query: 194 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253
           GGHL+HGFMT K+++S TSI+FESM Y+++  TG +DYD LE+ A LF PKLIIAG S Y
Sbjct: 132 GGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCY 191
Query: 254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313
            R+ DY R+R+IAD  GA LM DMAHISGLV A VV  PF++C VVTTTTHK+LRG R G
Sbjct: 192 SRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAG 251
Query: 314 MIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 364
           MIF+++     DP  G E    LES IN+AVFPGLQGGPHNH I G+AV LK A +PEFK
Sbjct: 252 MIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFK 311
Query: 365 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 424
            YQ +VV+NCRAL++ LVELGYK+V+GGSDNHL+LVDLR  G DG R EK+L+  SI  N
Sbjct: 312 EYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 371
Query: 425 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLV-QGSKL 483
           KN+ PGDKSAL P G+R+G+PA+T+RG  EK+F  +A FIH G+E+T++ +      + L
Sbjct: 372 KNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATL 431
Query: 484 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
           ++F   +   +      V  LR  VE+    FP+PG+
Sbjct: 432 KEFKEKLAG-DEKHQRAVRALRQEVESFAALFPLPGL 467

>pdb|1RVU|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine Hydroxymethyltransferase Length = 483

Iteration: 1
 Score =  548 bits (1413), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 278/457 (60%), Positives = 342/457 (74%), Gaps = 11/457 (2%)
Query: 74  LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
           L ++D EV +II KE  RQ   LELIASENF SRAV+EA+GSCL NKYS+G PG+RYYGG
Sbjct: 25  LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSQGYPGQRYYGG 84
Query: 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 193
            E+IDELETLCQKRAL A+ LD   WGVNVQP SGSPANF VYTA+++PH RIMGLDLP 
Sbjct: 85  TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 144
Query: 194 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253
           GGHL+HGFMT K+++S TSI+FESM Y+++  TG +DYD LE+ A LF PKLIIAG S Y
Sbjct: 145 GGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCY 204
Query: 254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313
            R+ DY R+R+IAD  GA LM DMAHISGLV A VV  PF++C VVTTTTHK+LRG R G
Sbjct: 205 SRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAG 264
Query: 314 MIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 364
           MIF+++     DP  G E    LES IN+AVFPGLQGGPHNH I G+AV LK A +PEFK
Sbjct: 265 MIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFK 324
Query: 365 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 424
            YQ +VV+NCRAL++ LVELGYK+V+GGSDNHL+LVDLR  G DG R EK+L+  SI  N
Sbjct: 325 EYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 384
Query: 425 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLV-QGSKL 483
           KN+ PGDKSAL P G+R+G+PA+T+RG  EK+F  +A FIH G+E+T++ +      + L
Sbjct: 385 KNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATL 444
Query: 484 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
           ++F   +   +      V  LR  VE+    FP+PG+
Sbjct: 445 KEFKEKLAG-DEKHQRAVRALRQEVESFAALFPLPGL 480

>pdb|1RV3|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine Hydroxymethyltransferase, Complex With Glycine Length = 483

Iteration: 1
 Score =  546 bits (1408), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 278/457 (60%), Positives = 341/457 (74%), Gaps = 11/457 (2%)
Query: 74  LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
           L ++D EV +II KE  RQ   LELIASENF SRAV+EA+GSCL NKYS G PG+RYYGG
Sbjct: 25  LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGG 84
Query: 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 193
            E+IDELETLCQKRAL A+ LD   WGVNVQP SGSPANF VYTA+++PH RIMGLDLP 
Sbjct: 85  TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 144
Query: 194 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253
           GGHL+HGFMT K+++S TSI+FESM Y+++  TG +DYD LE+ A LF PKLIIAG S Y
Sbjct: 145 GGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCY 204
Query: 254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313
            R+ DY R+R+IAD  GA LM DMAHISGLV A VV  PF++C VVTTTTHK+LRG R G
Sbjct: 205 SRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAG 264
Query: 314 MIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 364
           MIF+++     DP  G E    LES IN+AVFPGLQGGPHNH I G+AV LK A +PEFK
Sbjct: 265 MIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFK 324
Query: 365 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 424
            YQ +VV+NCRAL++ LVELGYK+V+GGSDNHL+LVDLR  G DG R EK+L+  SI  N
Sbjct: 325 EYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 384
Query: 425 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLV-QGSKL 483
           KN+ PGDKSAL P G+R+G+PA+T+RG  EK+F  +A FIH G+E+T++ +      + L
Sbjct: 385 KNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATL 444
Query: 484 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
           ++F   +   +      V  LR  VE+    FP+PG+
Sbjct: 445 KEFKEKLAG-DEKHQRAVRALRQEVESFAALFPLPGL 480

>pdb|1EJI|A Chain A, Recombinant Serine Hydroxymethyltransferase (Mouse) Length = 478

Iteration: 1
 Score =  530 bits (1364), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 269/457 (58%), Positives = 333/457 (72%), Gaps = 11/457 (2%)
Query: 74  LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
           L ++D EV  II KE  RQ   LELIASENF SRAV+EA+GS L NKYSEG PG+RYYGG
Sbjct: 20  LKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSSLNNKYSEGYPGQRYYGG 79
Query: 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 193
            E+IDELE LCQKRAL A++LD   WGVNVQP SGSPANF VYTA+++PH RI GLDLP 
Sbjct: 80  TEFIDELEXLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIXGLDLPD 139
Query: 194 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253
           GGHL+HGF T K+++S TSI+FES PY++   TG ++YD LE+ A LF PKLIIAG S Y
Sbjct: 140 GGHLTHGFXTDKKKISATSIFFESXPYKVYPETGYINYDQLEENASLFHPKLIIAGTSCY 199
Query: 254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313
            R+ DY R+R+IAD  GA L  D AHISGLVAA VV  PF++C VVTTTTHK+LRG R G
Sbjct: 200 SRNLDYARLRKIADDNGAYLXADXAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAG 259
Query: 314 MIFFKK-----DPVLG----VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 364
            IF++K     DP  G     ELES IN+AVFPGLQGGPHNH I G+AV LK A + EFK
Sbjct: 260 XIFYRKGVRSVDPKTGKETYYELESLINSAVFPGLQGGPHNHAIAGVAVALKQAXTTEFK 319
Query: 365 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 424
           +YQ +V++NCRAL+  L ELGYK+V+GGSDNHL+L DLR  G DG R EK+L+  SI  N
Sbjct: 320 IYQLQVLANCRALSDALTELGYKIVTGGSDNHLILXDLRSKGTDGGRAEKVLEACSIACN 379
Query: 425 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKK-LVQGSKL 483
           KN+ PGDKSAL P G+R+G+PA+T+RG  E++F  +A FIH G+E+TL+ +      + L
Sbjct: 380 KNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQSHXATKATL 439
Query: 484 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
           ++F   +      + + VA LR  VE   + F +PG+
Sbjct: 440 KEFKEKLAGDE-KIQSAVATLREEVENFASNFSLPGL 475

>pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From B.Stearothermophilus Length = 419

Iteration: 1
 Score =  377 bits (969), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/392 (50%), Positives = 259/392 (66%), Gaps = 16/392 (4%)
Query: 74  LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
           L + DP+V   I +E++RQ   +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG
Sbjct: 4   LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 193
            EY+D +E L ++RA   F  +      NVQP SG+ AN  VY  +L+  D ++G++L H
Sbjct: 64  CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 194 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253
           GGHL+HG  +P   V+ + + +  + Y +D  T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313
           PR  D+ + R+IAD VGA LM+DMAHI+GLVAA +  +P  Y   VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 373
           MI  ++      +    I+ A+FPG+QGGP  H I   AV    A   +FK Y  +VV N
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDN 288
Query: 374 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 432
            + LAS L   G+ LVSGG+DNHL+LVDLRP  + G   EK+LD   IT+NKN++P D +
Sbjct: 289 AKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPE 348
Query: 433 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 464
           S  V  GIRIG+ A+TTRGF  +E   IA  I
Sbjct: 349 SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380

>pdb|1YJS|A Chain A, K226q Mutant Of Serine Hydroxymethyltransferase From B. Stearothermophilus, Complex With Glycine Length = 419

Iteration: 1
 Score =  376 bits (966), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/392 (50%), Positives = 259/392 (66%), Gaps = 16/392 (4%)
Query: 74  LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
           L + DP+V   I +E++RQ   +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG
Sbjct: 4   LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 193
            EY+D +E L ++RA   F  +      NVQP SG+ AN  VY  +L+  D ++G++L H
Sbjct: 64  CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 194 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253
           GGHL+HG  +P   V+ + + +  + Y +D  T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313
           PR  D+ + R+IAD VGA LM+DMAHI+GLVAA +  +P  Y   VTTTTH++LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHQTLRGPRGG 234
Query: 314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 373
           MI  ++      +    I+ A+FPG+QGGP  H I   AV    A   +FK Y  +VV N
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDN 288
Query: 374 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 432
            + LAS L   G+ LVSGG+DNHL+LVDLRP  + G   EK+LD   IT+NKN++P D +
Sbjct: 289 AKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPE 348
Query: 433 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 464
           S  V  GIRIG+ A+TTRGF  +E   IA  I
Sbjct: 349 SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380

>pdb|2VI8|A Chain A, Crystal Structure Of S172absshmt Internal Aldimine Length = 405

Iteration: 1
 Score =  376 bits (966), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/392 (50%), Positives = 259/392 (66%), Gaps = 16/392 (4%)
Query: 74  LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
           L + DP+V   I +E++RQ   +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG
Sbjct: 4   LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 193
            EY+D +E L ++RA   F  +      NVQP SG+ AN  VY  +L+  D ++G++L H
Sbjct: 64  CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 194 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253
           GGHL+HG  +P   V+ + + +  + Y +D  T ++DYD + + A L RPKLI+A A+AY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAAAAY 174
Query: 254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313
           PR  D+ + R+IAD VGA LM+DMAHI+GLVAA +  +P  Y   VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 373
           MI  ++      +    I+ A+FPG+QGGP  H I   AV    A   +FK Y  +VV N
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDN 288
Query: 374 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 432
            + LAS L   G+ LVSGG+DNHL+LVDLRP  + G   EK+LD   IT+NKN++P D +
Sbjct: 289 AKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPE 348
Query: 433 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 464
           S  V  GIRIG+ A+TTRGF  +E   IA  I
Sbjct: 349 SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380

>pdb|2VGS|A Chain A, Crystal Structure Of E53qbsshmt Internal Aldimine Length = 407

Iteration: 1
 Score =  376 bits (965), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/392 (50%), Positives = 259/392 (66%), Gaps = 16/392 (4%)
Query: 74  LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
           L + DP+V   I +E++RQ   +ELIASENF SRAVMEA GS LTNKY++G PG+RYYGG
Sbjct: 4   LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAQGYPGRRYYGG 63
Query: 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 193
            EY+D +E L ++RA   F  +      NVQP SG+ AN  VY  +L+  D ++G++L H
Sbjct: 64  CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 194 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253
           GGHL+HG  +P   V+ + + +  + Y +D  T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313
           PR  D+ + R+IAD VGA LM+DMAHI+GLVAA +  +P  Y   VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 373
           MI  ++      +    I+ A+FPG+QGGP  H I   AV    A   +FK Y  +VV N
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDN 288
Query: 374 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 432
            + LAS L   G+ LVSGG+DNHL+LVDLRP  + G   EK+LD   IT+NKN++P D +
Sbjct: 289 AKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPE 348
Query: 433 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 464
           S  V  GIRIG+ A+TTRGF  +E   IA  I
Sbjct: 349 SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380

>pdb|2W7D|A Chain A, Crystal Structure Of Y51fbsshmt Internal Aldimine Length = 405

Iteration: 1
 Score =  376 bits (965), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/392 (50%), Positives = 259/392 (66%), Gaps = 16/392 (4%)
Query: 74  LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
           L + DP+V   I +E++RQ   +ELIASENF SRAVMEA GS LTNK++EG PG+RYYGG
Sbjct: 4   LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKFAEGYPGRRYYGG 63
Query: 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 193
            EY+D +E L ++RA   F  +      NVQP SG+ AN  VY  +L+  D ++G++L H
Sbjct: 64  CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 194 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253
           GGHL+HG  +P   V+ + + +  + Y +D  T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313
           PR  D+ + R+IAD VGA LM+DMAHI+GLVAA +  +P  Y   VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 373
           MI  ++      +    I+ A+FPG+QGGP  H I   AV    A   +FK Y  +VV N
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDN 288
Query: 374 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 432
            + LAS L   G+ LVSGG+DNHL+LVDLRP  + G   EK+LD   IT+NKN++P D +
Sbjct: 289 AKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPE 348
Query: 433 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 464
           S  V  GIRIG+ A+TTRGF  +E   IA  I
Sbjct: 349 SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380

>pdb|2VMV|A Chain A, Crystal Structure Of F351gbsshmt Internal Aldimine Length = 405

Iteration: 1
 Score =  375 bits (964), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/392 (50%), Positives = 259/392 (66%), Gaps = 16/392 (4%)
Query: 74  LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
           L + DP+V   I +E++RQ   +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG
Sbjct: 4   LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 193
            EY+D +E L ++RA   F  +      NVQP SG+ AN  VY  +L+  D ++G++L H
Sbjct: 64  CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 194 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253
           GGHL+HG  +P   V+ + + +  + Y +D  T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313
           PR  D+ + R+IAD VGA LM+DMAHI+GLVAA +  +P  Y   VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 373
           MI  ++      +    I+ A+FPG+QGGP  H I   AV    A   +FK Y  +VV N
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDN 288
Query: 374 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 432
            + LAS L   G+ LVSGG+DNHL+LVDLRP  + G   EK+LD   IT+NKN++P D +
Sbjct: 289 AKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPE 348
Query: 433 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 464
           S  V  GIRIG+ A+TTRGF  +E   IA  I
Sbjct: 349 SPGVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380

>pdb|1YJY|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B. Stearothermophilus, Complex With Serine Length = 419

Iteration: 1
 Score =  375 bits (963), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/392 (50%), Positives = 258/392 (65%), Gaps = 16/392 (4%)
Query: 74  LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
           L + DP+V   I +E++RQ   +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG
Sbjct: 4   LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 193
            EY+D +E L ++RA   F  +      NVQP SG+ AN  VY  +L+  D ++G++L H
Sbjct: 64  CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 194 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253
           GGHL+HG  +P   V+ + + +  + Y +D  T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313
           PR  D+ + R+IAD VGA LM+DMAHI+GLVAA +  +P  Y   VTTTTH +LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHMTLRGPRGG 234
Query: 314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 373
           MI  ++      +    I+ A+FPG+QGGP  H I   AV    A   +FK Y  +VV N
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDN 288
Query: 374 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 432
            + LAS L   G+ LVSGG+DNHL+LVDLRP  + G   EK+LD   IT+NKN++P D +
Sbjct: 289 AKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPE 348
Query: 433 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 464
           S  V  GIRIG+ A+TTRGF  +E   IA  I
Sbjct: 349 SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380

>pdb|2VMN|A Chain A, Crystal Structure Of N341absshmt Internal Aldimine Length = 405

Iteration: 1
 Score =  374 bits (961), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/392 (50%), Positives = 258/392 (65%), Gaps = 16/392 (4%)
Query: 74  LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
           L + DP+V   I +E++RQ   +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG
Sbjct: 4   LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 193
            EY+D +E L ++RA   F  +      NVQP SG+ AN  VY  +L+  D ++G++L H
Sbjct: 64  CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 194 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253
           GGHL+HG  +P   V+ + + +  + Y +D  T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313
           PR  D+ + R+IAD VGA LM+DMAHI+GLVAA +  +P  Y   VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 373
           MI  ++      +    I+ A+FPG+QGGP  H I   AV    A   +FK Y  +VV N
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDN 288
Query: 374 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 432
            + LAS L   G+ LVSGG+DNHL+LVDLRP  + G   EK+LD   IT+NK ++P D +
Sbjct: 289 AKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKATIPYDPE 348
Query: 433 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 464
           S  V  GIRIG+ A+TTRGF  +E   IA  I
Sbjct: 349 SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380

>pdb|2W7I|A Chain A, Crystal Structure Of Y61absshmt Internal Aldimine Length = 405

Iteration: 1
 Score =  374 bits (959), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/392 (50%), Positives = 258/392 (65%), Gaps = 16/392 (4%)
Query: 74  LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
           L + DP+V   I +E++RQ   +ELIASENF SRAVMEA GS LTNKY+EG PG+RY GG
Sbjct: 4   LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYAGG 63
Query: 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 193
            EY+D +E L ++RA   F  +      NVQP SG+ AN  VY  +L+  D ++G++L H
Sbjct: 64  CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 194 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253
           GGHL+HG  +P   V+ + + +  + Y +D  T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313
           PR  D+ + R+IAD VGA LM+DMAHI+GLVAA +  +P  Y   VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 373
           MI  ++      +    I+ A+FPG+QGGP  H I   AV    A   +FK Y  +VV N
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDN 288
Query: 374 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 432
            + LAS L   G+ LVSGG+DNHL+LVDLRP  + G   EK+LD   IT+NKN++P D +
Sbjct: 289 AKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPE 348
Query: 433 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 464
           S  V  GIRIG+ A+TTRGF  +E   IA  I
Sbjct: 349 SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380

>pdb|2VMR|A Chain A, Crystal Structure Of Y60absshmt Internal Aldimine Length = 405

Iteration: 1
 Score =  374 bits (959), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/392 (50%), Positives = 258/392 (65%), Gaps = 16/392 (4%)
Query: 74  LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
           L + DP+V   I +E++RQ   +ELIASENF SRAVMEA GS LTNKY+EG PG+R YGG
Sbjct: 4   LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRAYGG 63
Query: 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 193
            EY+D +E L ++RA   F  +      NVQP SG+ AN  VY  +L+  D ++G++L H
Sbjct: 64  CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 194 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253
           GGHL+HG  +P   V+ + + +  + Y +D  T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313
           PR  D+ + R+IAD VGA LM+DMAHI+GLVAA +  +P  Y   VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 373
           MI  ++      +    I+ A+FPG+QGGP  H I   AV    A   +FK Y  +VV N
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDN 288
Query: 374 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 432
            + LAS L   G+ LVSGG+DNHL+LVDLRP  + G   EK+LD   IT+NKN++P D +
Sbjct: 289 AKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPE 348
Query: 433 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 464
           S  V  GIRIG+ A+TTRGF  +E   IA  I
Sbjct: 349 SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380

>pdb|2DKJ|A Chain A, Crystal Structure Of T.Th.Hb8 Serine Hydroxymethyltransferase Length = 407

Iteration: 1
 Score =  371 bits (952), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/388 (50%), Positives = 256/388 (65%), Gaps = 15/388 (3%)
Query: 78  DPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 137
           D  + E+I  E++RQ + LELIASENF S+ V EAVGS LTNKY+EG PG RYYGG E I
Sbjct: 8   DEALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVI 67
Query: 138 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 197
           D +E+L  +RA A F      W  NVQP SGS AN  VY A+++P D +MG+DL  GGHL
Sbjct: 68  DRVESLAIERAKALFG---AAWA-NVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHL 123
Query: 198 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 257
           +HG      RV+ +   ++ + Y +   T L+D + + + A+  RPK+I+AGASAYPR +
Sbjct: 124 THG-----SRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYPRFW 178
Query: 258 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 317
           D+   R+IAD VGA L++DMAH +GLVAA +  +P  Y  VVT+TTHK+LRGPRGG+I  
Sbjct: 179 DFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGLI-L 237
Query: 318 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 377
             DP LG      I+  +FPG+QGGP  H I G AV    A  PEFK Y   VV N + L
Sbjct: 238 SNDPELG----KRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRL 293
Query: 378 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 436
           A  L   GY++V+GG+DNHL LVDLRP G+ G   E+ LD   IT+NKN++P D K   V
Sbjct: 294 AEELARRGYRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRV 353
Query: 437 PGGIRIGSPAMTTRGFSEKEFVAIADFI 464
             GIRIG+PA+TTRGF+ +E   +A+ I
Sbjct: 354 TSGIRIGTPAITTRGFTPEEMPLVAELI 381

>pdb|3ECD|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From Burkholderia Pseudomallei Length = 425

Iteration: 1
 Score =  367 bits (943), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/406 (49%), Positives = 258/406 (63%), Gaps = 15/406 (3%)
Query: 65  DGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEG 124
           + + F   SL E D  V   I KE ERQ   +ELIASEN  SRAV++A GS LTNKY+EG
Sbjct: 4   NANPFFSQSLAERDASVRGAILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYAEG 63
Query: 125 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHD 184
            PGKRYYGG E+ DE+E L  +R    FN        NVQP SG+ AN  V  A+ KP D
Sbjct: 64  YPGKRYYGGCEFADEVEALAIERVKRLFNAGH----ANVQPHSGAQANGAVMLALAKPGD 119
Query: 185 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK 244
            ++G+ L  GGHL+HG    K  +SG   +F ++ Y +   T L+DYD +E  A   +P 
Sbjct: 120 TVLGMSLDAGGHLTHG---AKPALSGK--WFNALQYGVSRDTMLIDYDQVEALAQQHKPS 174
Query: 245 LIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH 304
           LIIAG SAYPR  D+ R R IAD+VGA LM+DMAHI+G++AA   A+P ++  VVT+TTH
Sbjct: 175 LIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTH 234
Query: 305 KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 364
           K+LRGPRGG +    +     E+   IN+AVFPGLQGGP  H I G AV    A + +FK
Sbjct: 235 KTLRGPRGGFVLTNDE-----EIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFK 289
Query: 365 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 424
            Y ++V++N +AL   L   G  LV+GG+DNHL+LVDLRP G+ GA+VE+ L+ A IT N
Sbjct: 290 TYIDRVLANAQALGDVLKAGGVDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCN 349
Query: 425 KNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 469
           KN +P D +   +  GIR+G+PA TTRGF   EF  +   I E  E
Sbjct: 350 KNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFE 395

>pdb|3PGY|A Chain A, Serine Hydroxymethyltransferase From Staphylococcus Aureus, S95p Mutant. Length = 415

Iteration: 1
 Score =  365 bits (936), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/407 (46%), Positives = 261/407 (64%), Gaps = 17/407 (4%)
Query: 78  DPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 137
           D  + E I +E +RQ  ++ELIASENF S AVMEA GS LTNKY+EG PG+RYYGG E++
Sbjct: 11  DKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRYYGGCEFV 70
Query: 138 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 197
           D  E++   RA A F  +     VNVQP SG  AN  VY   L+  D ++G++L HGGHL
Sbjct: 71  DVTESIAIDRAKALFGAEH----VNVQPHSGPQANMAVYLVALEMGDTVLGMNLSHGGHL 126
Query: 198 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 257
           +HG   P   V+ +  ++  + Y +D+ T  ++YD + K A+  +PKLI+AGASAY R  
Sbjct: 127 THG--AP---VNFSGKFYNFVEYGVDKDTERINYDEVRKLALEHKPKLIVAGASAYSRTI 181
Query: 258 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 317
           D+ + ++IAD V A LM+DMAHI+GLVAA +  +P +Y D VTTTTHK+LRGPRGGMI  
Sbjct: 182 DFKKFKEIADEVNAKLMVDMAHIAGLVAAGLHPNPVEYADFVTTTTHKTLRGPRGGMILC 241
Query: 318 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 377
           K+      E +  I+  +FPG+QGGP  H I   AV    A    FK YQ +VV N + L
Sbjct: 242 KE------EYKKDIDKTIFPGIQGGPLEHVIAAKAVAFGEALENNFKTYQQQVVKNAKVL 295
Query: 378 ASRLVELGYKLVSGGSDNHLVLVDLR-PMGIDGARVEKILDMASITLNKNSVPGDKSA-L 435
           A  L+  G+++VSGG+DNHLV VD++  +G+ G   E+ LD   IT NKN++P D+    
Sbjct: 296 AEALINEGFRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPF 355
Query: 436 VPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSK 482
           V  GIR+G+PA TTRGF EK F  +A  I   ++ + + +KL Q  +
Sbjct: 356 VTSGIRLGTPAATTRGFDEKAFEEVAKIISLALKNSKDEEKLQQAKE 402

>pdb|3H7F|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From Mycobacterium Tuberculosis Length = 447

Iteration: 1
 Score =  360 bits (923), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 202/450 (44%), Positives = 273/450 (60%), Gaps = 46/450 (10%)
Query: 74  LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
           L E DP++ E++ KE  RQ  +LE+IASENF  RAV++A GS LTNKY+EGLPG+RYYGG
Sbjct: 26  LAEVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGG 85
Query: 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 193
            E++D +E L + RA A F  +      NVQP SG+ AN  V  A++ P +R++GLDL +
Sbjct: 86  CEHVDVVENLARDRAKALFGAEF----ANVQPHSGAQANAAVLHALMSPGERLLGLDLAN 141
Query: 194 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253
           GGHL+HG      R++ +   +E+  Y +D +T L+D D +  TA+ FRPK+IIAG SAY
Sbjct: 142 GGHLTHGM-----RLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAY 196
Query: 254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313
           PR  D+   R IAD VGA L++DMAH +GLVAA +   P  + DVV+TT H +L G R G
Sbjct: 197 PRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHXTLGGGRSG 256
Query: 314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 373
           +I  K+      +   AIN+AVFPG QGGP  H I G AV LK A +PEF   Q + +S 
Sbjct: 257 LIVGKQ------QYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSG 310
Query: 374 CRALASRLV-----ELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSV 428
            R +A RL+     + G  +VSGG+D HLVLVDLR   +DG   E +L    IT+N+N+V
Sbjct: 311 ARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAV 370
Query: 429 PGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFM 487
           P D +  +V  G+RIG+PA+ TRGF + EF  +AD I         A  L  GS +    
Sbjct: 371 PNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADII---------ATALATGSSV---- 417
Query: 488 NFVTSPNFSLMNNVADLRGRVEALTTQFPI 517
                       +V+ L+ R   L   FP+
Sbjct: 418 ------------DVSALKDRATRLARAFPL 435

>pdb|1DFO|A Chain A, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli Serine Hydroxymethyltransferase In Complex With Glycine And 5-Formyl Tetrahydrofolate Length = 417

Iteration: 1
 Score =  352 bits (903), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 200/393 (50%), Positives = 261/393 (66%), Gaps = 14/393 (3%)
Query: 73  SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 132
           ++ + D E+ + + +EK RQ + +ELIASEN+TS  VM+A GS LTNKY+EG PGKRYYG
Sbjct: 7   NIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYG 66
Query: 133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 192
           G EY+D +E L   RA   F  D      NVQP SGS ANF VYTA+L+P D ++G++L 
Sbjct: 67  GCEYVDIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLA 122
Query: 193 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 252
           HGGHL+HG  +P   V+ +   +  +PY +D +TG +DY  LEK A   +PK+II G SA
Sbjct: 123 HGGHLTHG--SP---VNFSGKLYNIVPYGID-ATGHIDYADLEKQAKEHKPKMIIGGFSA 176
Query: 253 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 312
           Y    D+ +MR+IAD++GA L +DMAH++GLVAA V  +P  +  VVTTTTHK+L GPRG
Sbjct: 177 YSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRG 236
Query: 313 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVS 372
           G+I  K       EL   +N+AVFPG QGGP  H I G AV LK A  PEFK YQ +V  
Sbjct: 237 GLILAKGG---SEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAK 293
Query: 373 NCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD- 431
           N +A+    +E GYK+VSGG+DNHL LVDL    + G   +  L  A+IT+NKNSVP D 
Sbjct: 294 NAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDP 353
Query: 432 KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 464
           KS  V  GIR+G+PA+T RGF E E   +A ++
Sbjct: 354 KSPFVTSGIRVGTPAITRRGFKEAEAKELAGWM 386

>pdb|1EQB|A Chain A, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of Ternary Complex Between The Y65f Mutant Of E-Coli Serine Hydroxymethyltransferase, Glycine And 5-Formyl Tetrahydrofolate Length = 417

Iteration: 1
 Score =  350 bits (899), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 199/393 (50%), Positives = 261/393 (66%), Gaps = 14/393 (3%)
Query: 73  SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 132
           ++ + D E+ + + +EK RQ + +ELIASEN+TS  VM+A GS LTNKY+EG PGKRY+G
Sbjct: 7   NIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYFG 66
Query: 133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 192
           G EY+D +E L   RA   F  D      NVQP SGS ANF VYTA+L+P D ++G++L 
Sbjct: 67  GCEYVDIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLA 122
Query: 193 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 252
           HGGHL+HG  +P   V+ +   +  +PY +D +TG +DY  LEK A   +PK+II G SA
Sbjct: 123 HGGHLTHG--SP---VNFSGKLYNIVPYGID-ATGHIDYADLEKQAKEHKPKMIIGGFSA 176
Query: 253 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 312
           Y    D+ +MR+IAD++GA L +DMAH++GLVAA V  +P  +  VVTTTTHK+L GPRG
Sbjct: 177 YSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRG 236
Query: 313 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVS 372
           G+I  K       EL   +N+AVFPG QGGP  H I G AV LK A  PEFK YQ +V  
Sbjct: 237 GLILAKGG---SEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAK 293
Query: 373 NCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD- 431
           N +A+    +E GYK+VSGG+DNHL LVDL    + G   +  L  A+IT+NKNSVP D 
Sbjct: 294 NAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDP 353
Query: 432 KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 464
           KS  V  GIR+G+PA+T RGF E E   +A ++
Sbjct: 354 KSPFVTSGIRVGTPAITRRGFKEAEAKELAGWM 386

>pdb|3G8M|A Chain A, Serine Hydroxymethyltransferase Y55f Mutant Length = 417

Iteration: 1
 Score =  350 bits (899), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 199/393 (50%), Positives = 261/393 (66%), Gaps = 14/393 (3%)
Query: 73  SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 132
           ++ + D E+ + + +EK RQ + +ELIASEN+TS  VM+A GS LTNK++EG PGKRYYG
Sbjct: 7   NIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKFAEGYPGKRYYG 66
Query: 133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 192
           G EY+D +E L   RA   F  D      NVQP SGS ANF VYTA+L+P D ++G++L 
Sbjct: 67  GCEYVDIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLA 122
Query: 193 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 252
           HGGHL+HG  +P   V+ +   +  +PY +D +TG +DY  LEK A   +PK+II G SA
Sbjct: 123 HGGHLTHG--SP---VNFSGKLYNIVPYGID-ATGHIDYADLEKQAKEHKPKMIIGGFSA 176
Query: 253 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 312
           Y    D+ +MR+IAD++GA L +DMAH++GLVAA V  +P  +  VVTTTTHK+L GPRG
Sbjct: 177 YSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRG 236
Query: 313 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVS 372
           G+I  K       EL   +N+AVFPG QGGP  H I G AV LK A  PEFK YQ +V  
Sbjct: 237 GLILAKGG---SEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAK 293
Query: 373 NCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD- 431
           N +A+    +E GYK+VSGG+DNHL LVDL    + G   +  L  A+IT+NKNSVP D 
Sbjct: 294 NAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDP 353
Query: 432 KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 464
           KS  V  GIR+G+PA+T RGF E E   +A ++
Sbjct: 354 KSPFVTSGIRVGTPAITRRGFKEAEAKELAGWM 386

>pdb|3N0L|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From Campylobacter Jejuni Length = 417

Iteration: 1
 Score =  341 bits (875), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 188/393 (47%), Positives = 248/393 (63%), Gaps = 16/393 (4%)
Query: 73  SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 132
           SL   D E+ ++  KE ERQ + LE IASENFT   V E  GS LTNKY+EG PGKRYYG
Sbjct: 5   SLEXFDKEIFDLTNKELERQCEGLEXIASENFTLPEVXEVXGSILTNKYAEGYPGKRYYG 64
Query: 133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 192
           G E++DE+ETL  +R    FN    K+  NVQP SGS AN  VY A++ P D+I+G DL 
Sbjct: 65  GCEFVDEIETLAIERCKKLFNC---KFA-NVQPNSGSQANQGVYAALINPGDKILGXDLS 120
Query: 193 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 252
           HGGHL+HG      +VS +   +ES  Y + E  G +DY+ + + A   +PKLI+ GASA
Sbjct: 121 HGGHLTHG-----AKVSSSGKXYESCFYGV-ELDGRIDYEKVREIAKKEKPKLIVCGASA 174
Query: 253 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 312
           Y R  D+ + R+IAD +GA L  D+AHI+GLV A     PF Y  VV++TTHK+LRGPRG
Sbjct: 175 YARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPRG 234
Query: 313 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVS 372
           G+I    +     EL   IN+A+FPG+QGGP  H I   AV  K   S E+KVY  +V +
Sbjct: 235 GIIXTNDE-----ELAKKINSAIFPGIQGGPLXHVIAAKAVGFKFNLSDEWKVYAKQVRT 289
Query: 373 NCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD- 431
           N + LA+ L +  +KLVS G+DNHLVL         G   +  L  A IT NKN+VPG+ 
Sbjct: 290 NAQVLANVLXDRKFKLVSDGTDNHLVLXSFLDREFSGKDADLALGNAGITANKNTVPGEI 349
Query: 432 KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 464
           +S  +  G+R+G+PA+T RGF EKE   ++++I
Sbjct: 350 RSPFITSGLRLGTPALTARGFKEKEXEIVSNYI 382

>pdb|3GBX|A Chain A, Serine Hydroxymethyltransferase From Salmonella Typhimurium Length = 420

Iteration: 1
 Score =  334 bits (856), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 194/392 (49%), Positives = 250/392 (63%), Gaps = 14/392 (3%)
Query: 73  SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 132
           ++ + D E+ +   +EK RQ + +ELIASEN+TS  V +A GS LTNKY+EG PGKRYYG
Sbjct: 10  NIADYDAELWQAXEQEKVRQEEHIELIASENYTSPRVXQAQGSQLTNKYAEGYPGKRYYG 69
Query: 133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 192
           G EY+D +E L   RA   F  D      NVQP SGS ANF VYTA+L+P D ++G +L 
Sbjct: 70  GCEYVDVVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLQPGDTVLGXNLA 125
Query: 193 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 252
            GGHL+HG  +P   V+ +   +  +PY +DES G +DYD   K A   +PK II G SA
Sbjct: 126 QGGHLTHG--SP---VNFSGKLYNIVPYGIDES-GKIDYDEXAKLAKEHKPKXIIGGFSA 179
Query: 253 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 312
           Y    D+ + R+IAD++GA L +D AH++GL+AA V  +P  +  VVTTTTHK+L GPRG
Sbjct: 180 YSGVVDWAKXREIADSIGAYLFVDXAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRG 239
Query: 313 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVS 372
           G+I  K       EL   +N+AVFP  QGGP  H I G AV LK A  PEFKVYQ +V  
Sbjct: 240 GLILAKGGDE---ELYKKLNSAVFPSAQGGPLXHVIAGKAVALKEAXEPEFKVYQQQVAK 296
Query: 373 NCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD- 431
           N +A     +  GYK+VSGG++NHL L+DL    + G   +  L  A+IT+NKNSVP D 
Sbjct: 297 NAKAXVEVFLNRGYKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDP 356
Query: 432 KSALVPGGIRIGSPAMTTRGFSEKEFVAIADF 463
           KS  V  GIRIGSPA+T RGF E E   +A +
Sbjct: 357 KSPFVTSGIRIGSPAVTRRGFKEAEVKELAGW 388

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	520
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	0.0
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	0.0
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	0.0
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	0.0
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	0.0
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	0.0
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	0.0
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	0.0
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	8e-14
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* Length = 483

 Score =  821 bits (2124), Expect = 0.0
 Identities = 272/463 (58%), Positives = 334/463 (72%), Gaps = 9/463 (1%)

Query: 67  SSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLP 126
              +   L ++D EV +II KE  RQ   LELIASENF SRAV+EA+GSCL NKYS G P
Sbjct: 18  EQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYP 77

Query: 127 GKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRI 186
           G+RYYGG E+IDELETLCQKRAL A+ LD   WGVNVQP SGSPANF VYTA+++PH RI
Sbjct: 78  GQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRI 137

Query: 187 MGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI 246
           MGLDLP GGHL+HGFMT K+++S TSI+FESM Y+++  TG +DYD LE+ A LF PKLI
Sbjct: 138 MGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLI 197

Query: 247 IAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKS 306
           IAG S Y R+ DY R+R+IAD  GA LM DMAHISGLV A VV  PF++C VVTTTTHK+
Sbjct: 198 IAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKT 257

Query: 307 LRGPRGGMIFFKKDP---------VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH 357
           LRG R GMIF+++            +   LES IN+AVFPGLQGGPHNH I G+AV LK 
Sbjct: 258 LRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQ 317

Query: 358 AQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILD 417
           A +PEFK YQ +VV+NCRAL++ LVELGYK+V+GGSDNHL+LVDLR  G DG R EK+L+
Sbjct: 318 AMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLE 377

Query: 418 MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKL 477
             SI  NKN+ PGDKSAL P G+R+G+PA+T+RG  EK+F  +A FIH G+E+T++ +  
Sbjct: 378 ACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDD 437

Query: 478 VQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
                         + +      V  LR  VE+    FP+PG+
Sbjct: 438 TGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPGL 480

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} SCOP: c.67.1.4 PDB: 3ou5_A Length = 490

 Score =  818 bits (2115), Expect = 0.0
 Identities = 272/479 (56%), Positives = 344/479 (71%), Gaps = 12/479 (2%)

Query: 50  RPPSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAV 109
           R   S +        +       SL ++DPE+ E++ +EK+RQ + LELIASENF SRA 
Sbjct: 11  RAQHSNAAQTQTGEANRGWTGQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAA 70

Query: 110 MEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS 169
           +EA+GSCL NKYSEG PGKRYYGG E +DE+E LCQ+RAL AF+LD  +WGVNVQP SGS
Sbjct: 71  LEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGS 130

Query: 170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV 229
           PAN  VYTA+L+PHDRIMGLDLP GGHL+HG+M+  +R+S TSI+FESMPY+L+  TGL+
Sbjct: 131 PANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLI 190

Query: 230 DYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV 289
           DY+ L  TA LFRP+LIIAG SAY R  DY RMR++ D V A L+ DMAHISGLVAA V+
Sbjct: 191 DYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVI 250

Query: 290 ADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDP---------VLGVELESAINNAVFPGLQ 340
             PFK+ D+VTTTTHK+LRG R G+IF++K            +    E  IN AVFP LQ
Sbjct: 251 PSPFKHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQ 310

Query: 341 GGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV 400
           GGPHNH I  +AV LK A +P F+ Y  +V+ N RA+A  L+E GY LVSGG+DNHLVLV
Sbjct: 311 GGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLV 370

Query: 401 DLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAI 460
           DLRP G+DGAR E++L++ SIT NKN+ PGD+SA+ PGG+R+G+PA+T+R F E +F  +
Sbjct: 371 DLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRV 430

Query: 461 ADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 519
            DFI EGV I LE K   + +KLQDF +F+   +      +A+LR RVE     FP+PG
Sbjct: 431 VDFIDEGVNIGLEVKS--KTAKLQDFKSFLLK-DSETSQRLANLRQRVEQFARAFPMPG 486

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} Length = 407

 Score =  581 bits (1501), Expect = 0.0
 Identities = 202/447 (45%), Positives = 262/447 (58%), Gaps = 43/447 (9%)

Query: 73  SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 132
           S  + D  + E+I  E++RQ + LELIASENF S+ V EAVGS LTNKY+EG PG RYYG
Sbjct: 3   STLKRDEALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYG 62

Query: 133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 192
           G E ID +E+L  +RA A F         NVQP SGS AN  VY A+++P D +MG+DL 
Sbjct: 63  GCEVIDRVESLAIERAKALFGAAW----ANVQPHSGSQANMAVYMALMEPGDTLMGMDLA 118

Query: 193 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 252
            GGHL+HG    +   SG    ++ + Y +   T L+D + + + A+  RPK+I+AGASA
Sbjct: 119 AGGHLTHGS---RVNFSG--KLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASA 173

Query: 253 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 312
           YPR +D+   R+IAD VGA L++DMAH +GLVAA +  +P  Y  VVT+TTHK+LRGPRG
Sbjct: 174 YPRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRG 233

Query: 313 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVS 372
           G+I          EL   I+  +FPG+QGGP  H I G AV    A  PEFK Y   VV 
Sbjct: 234 GLILSNDP-----ELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVE 288

Query: 373 NCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD- 431
           N + LA  L   GY++V+GG+DNHL LVDLRP G+ G   E+ LD   IT+NKN++P D 
Sbjct: 289 NAKRLAEELARRGYRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDP 348

Query: 432 KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVT 491
           K   V  GIRIG+PA+TTRGF+ +E   +A+ I       L                   
Sbjct: 349 KPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDR----ALLEG---------------- 388

Query: 492 SPNFSLMNNVADLRGRVEALTTQFPIP 518
                       LR  V  L    P+P
Sbjct: 389 --------PSEALREEVRRLALAHPMP 407

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} Length = 425

 Score =  581 bits (1501), Expect = 0.0
 Identities = 207/454 (45%), Positives = 269/454 (59%), Gaps = 34/454 (7%)

Query: 65  DGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEG 124
           + + F   SL E D  V   I KE ERQ   +ELIASEN  SRAV++A GS LTNKY+EG
Sbjct: 4   NANPFFSQSLAERDASVRGAILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYAEG 63

Query: 125 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHD 184
            PGKRYYGG E+ DE+E L  +R    FN        NVQP SG+ AN  V  A+ KP D
Sbjct: 64  YPGKRYYGGCEFADEVEALAIERVKRLFNAGH----ANVQPHSGAQANGAVMLALAKPGD 119

Query: 185 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK 244
            ++G+ L  GGHL+HG    K  +SG   +F ++ Y +   T L+DYD +E  A   +P 
Sbjct: 120 TVLGMSLDAGGHLTHGA---KPALSG--KWFNALQYGVSRDTMLIDYDQVEALAQQHKPS 174

Query: 245 LIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH 304
           LIIAG SAYPR  D+ R R IAD+VGA LM+DMAHI+G++AA   A+P ++  VVT+TTH
Sbjct: 175 LIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTH 234

Query: 305 KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 364
           K+LRGPRGG +    +     E+   IN+AVFPGLQGGP  H I G AV    A + +FK
Sbjct: 235 KTLRGPRGGFVLTNDE-----EIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFK 289

Query: 365 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 424
            Y ++V++N +AL   L   G  LV+GG+DNHL+LVDLRP G+ GA+VE+ L+ A IT N
Sbjct: 290 TYIDRVLANAQALGDVLKAGGVDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCN 349

Query: 425 KNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKL 483
           KN +P D +   +  GIR+G+PA TTRGF   EF  +   I E      EA +       
Sbjct: 350 KNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILE----VFEALRTNPEGDH 405

Query: 484 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPI 517
                               +R  + AL  +FPI
Sbjct: 406 A---------------TEQRVRREIFALCERFPI 424

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} PDB: 1dfo_A* 3g8m_A* 1eqb_A* Length = 420

 Score =  581 bits (1500), Expect = 0.0
 Identities = 200/450 (44%), Positives = 272/450 (60%), Gaps = 38/450 (8%)

Query: 71  DYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRY 130
           + ++ + D E+ + + +EK RQ + +ELIASEN+TS  VM+A GS LTNKY+EG PGKRY
Sbjct: 8   EMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRY 67

Query: 131 YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLD 190
           YGG EY+D +E L   RA   F  D      NVQP SGS ANF VYTA+L+P D ++G++
Sbjct: 68  YGGCEYVDVVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLQPGDTVLGMN 123

Query: 191 LPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 250
           L  GGHL+HG        SG    +  +PY +DE +G +DYD + K A   +PK+II G 
Sbjct: 124 LAQGGHLTHG---SPVNFSG--KLYNIVPYGIDE-SGKIDYDEMAKLAKEHKPKMIIGGF 177

Query: 251 SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGP 310
           SAY    D+ +MR+IAD++GA L +DMAH++GL+AA V  +P  +  VVTTTTHK+L GP
Sbjct: 178 SAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGP 237

Query: 311 RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV 370
           RGG+I  K       EL   +N+AVFP  QGGP  H I G AV LK A  PEFKVYQ +V
Sbjct: 238 RGGLILAKGG---DEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQV 294

Query: 371 VSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG 430
             N +A+    +  GYK+VSGG++NHL L+DL    + G   +  L  A+IT+NKNSVP 
Sbjct: 295 AKNAKAMVEVFLNRGYKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPN 354

Query: 431 D-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNF 489
           D KS  V  GIRIGSPA+T RGF E E   +A ++ + ++                    
Sbjct: 355 DPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLD-------------------- 394

Query: 490 VTSPNFSLMNNVADLRGRVEALTTQFPIPG 519
               N +    +  ++ +V  +  +FP+  
Sbjct: 395 ----NINDEATIERVKAKVLDICARFPVYA 420

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} Length = 417

 Score =  578 bits (1492), Expect = 0.0
 Identities = 191/446 (42%), Positives = 265/446 (59%), Gaps = 40/446 (8%)

Query: 73  SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 132
           SL   D E+ ++  KE ERQ + LE+IASENFT   VME +GS LTNKY+EG PGKRYYG
Sbjct: 5   SLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYG 64

Query: 133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 192
           G E++DE+ETL  +R    FN        NVQP SGS AN  VY A++ P D+I+G+DL 
Sbjct: 65  GCEFVDEIETLAIERCKKLFNCKF----ANVQPNSGSQANQGVYAALINPGDKILGMDLS 120

Query: 193 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 252
           HGGHL+HG    K   SG    +ES  Y ++   G +DY+ + + A   +PKLI+ GASA
Sbjct: 121 HGGHLTHG---AKVSSSG--KMYESCFYGVEL-DGRIDYEKVREIAKKEKPKLIVCGASA 174

Query: 253 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 312
           Y R  D+ + R+IAD +GA L  D+AHI+GLV A     PF Y  VV++TTHK+LRGPRG
Sbjct: 175 YARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPRG 234

Query: 313 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVS 372
           G+I    +     EL   IN+A+FPG+QGGP  H I   AV  K   S E+KVY  +V +
Sbjct: 235 GIIMTNDE-----ELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRT 289

Query: 373 NCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD- 431
           N + LA+ L++  +KLVS G+DNHLVL+        G   +  L  A IT NKN+VPG+ 
Sbjct: 290 NAQVLANVLMDRKFKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEI 349

Query: 432 KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVT 491
           +S  +  G+R+G+PA+T RGF EKE   ++++I + ++                      
Sbjct: 350 RSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILD---------------------- 387

Query: 492 SPNFSLMNNVADLRGRVEALTTQFPI 517
             + +      +++  ++ L + F I
Sbjct: 388 --DVNNEKLQENIKQELKKLASNFII 411

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... Length = 405

 Score =  577 bits (1490), Expect = 0.0
 Identities = 195/395 (49%), Positives = 257/395 (65%), Gaps = 16/395 (4%)

Query: 73  SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 132
            L + DP+V   I +E++RQ   +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYG
Sbjct: 3   YLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYG 62

Query: 133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 192
           G EY+D +E L ++RA   F  +      NVQP SG+ AN  VY  +L+  D ++G++L 
Sbjct: 63  GCEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLS 118

Query: 193 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 252
           HGGHL+HG       V+ + + +  + Y +D  T ++DYD + + A L RPKLI+A A+A
Sbjct: 119 HGGHLTHGS-----PVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAAAA 173

Query: 253 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 312
           YPR  D+ + R+IAD VGA LM+DMAHI+GLVAA +  +P  Y   VTTTTHK+LRGPRG
Sbjct: 174 YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG 233

Query: 313 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVS 372
           GMI  ++      +    I+ A+FPG+QGGP  H I   AV    A   +FK Y  +VV 
Sbjct: 234 GMILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVD 287

Query: 373 NCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD- 431
           N + LAS L   G+ LVSGG+DNHL+LVDLRP  + G   EK+LD   IT+NKN++P D 
Sbjct: 288 NAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDP 347

Query: 432 KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE 466
           +S  V  GIRIG+ A+TTRGF  +E   IA  I  
Sbjct: 348 ESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGL 382

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} Length = 447

 Score =  578 bits (1492), Expect = 0.0
 Identities = 201/459 (43%), Positives = 270/459 (58%), Gaps = 46/459 (10%)

Query: 65  DGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEG 124
            G   +   L E DP++ E++ KE  RQ  +LE+IASENF  RAV++A GS LTNKY+EG
Sbjct: 17  QGPGSMSAPLAEVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEG 76

Query: 125 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHD 184
           LPG+RYYGG E++D +E L + RA A F  +      NVQP SG+ AN  V  A++ P +
Sbjct: 77  LPGRRYYGGCEHVDVVENLARDRAKALFGAEF----ANVQPHSGAQANAAVLHALMSPGE 132

Query: 185 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK 244
           R++GLDL +GGHL+HG    +   SG    +E+  Y +D +T L+D D +  TA+ FRPK
Sbjct: 133 RLLGLDLANGGHLTHGM---RLNFSGK--LYENGFYGVDPATHLIDMDAVRATALEFRPK 187

Query: 245 LIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH 304
           +IIAG SAYPR  D+   R IAD VGA L++DMAH +GLVAA +   P  + DVV+TT H
Sbjct: 188 VIIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVH 247

Query: 305 KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 364
           K+L G R G+I  K+      +   AIN+AVFPG QGGP  H I G AV LK A +PEF 
Sbjct: 248 KTLGGGRSGLIVGKQ------QYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFA 301

Query: 365 VYQNKVVSNCRALASRLV-----ELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMA 419
             Q + +S  R +A RL+     + G  +VSGG+D HLVLVDLR   +DG   E +L   
Sbjct: 302 DRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEV 361

Query: 420 SITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLV 478
            IT+N+N+VP D +  +V  G+RIG+PA+ TRGF + EF  +AD I   +          
Sbjct: 362 GITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALATGSSVD--- 418

Query: 479 QGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPI 517
                                 V+ L+ R   L   FP+
Sbjct: 419 ----------------------VSALKDRATRLARAFPL 435

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* Length = 456

 Score = 72.5 bits (177), Expect = 8e-14
 Identities = 56/346 (16%), Positives = 99/346 (28%), Gaps = 55/346 (15%)

Query: 89  KERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA 148
           +E  + +  L + + +          +    +++  + G   Y G+E    LE     R 
Sbjct: 29  QEAGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMMMGDEAYAGSENFYHLE-----RT 83

Query: 149 LAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMG---LDLPHGGHLSHGFMTPK 205
           +      ++    +     G  A   +    +KP   + G             +G     
Sbjct: 84  VQELFGFKHIVPTH----QGRGAENLLSQLAIKPGQYVAGNMYFTTTRYHQEKNGA---- 135

Query: 206 RRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI----------IAGASAYPR 255
                                G +D   L+K       + I          +AG      
Sbjct: 136 -VFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSM 194

Query: 256 DFDYPRMRQIADAVGALLMMDMAHISG--------------LVAASVVADPFKYCDVVTT 301
             +   +R++ +A G  +  D                       A +V + F Y D  T 
Sbjct: 195 A-NMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTM 253

Query: 302 TTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGL----QGGPHNHTIGGLAVCLKH 357
           +  K      GG +    D     E+ S+    V         GG     +  +A+ L+ 
Sbjct: 254 SGKKDCLVNIGGFLCMNDD-----EMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLRE 308

Query: 358 AQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLR 403
           A   E   Y    V   R L  +L   G  +V      H V +D R
Sbjct: 309 AMQYE---YIEHRVKQVRYLGDKLKAAGVPIVE-PVGGHAVFLDAR 350

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467

 Score = 51.7 bits (123), Expect = 4e-07
 Identities = 46/269 (17%), Positives = 78/269 (28%), Gaps = 35/269 (13%)

Query: 167 SGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKR-RVSGTSIYFESMPYRLDES 225
            G  A   ++  +LK   +      P      H   T     ++G            D  
Sbjct: 99  QGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSE 158

Query: 226 T-----GLVDYDMLEKTAILFRPKLIIA---------GASAYPRDFDYPR-MRQIADAVG 270
           T     G  D   L++  I       I           A   P      + + +IA   G
Sbjct: 159 TYDDWKGDFDIKKLKE-NIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHG 217

Query: 271 ALLMMDMAHI--------------SGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIF 316
             ++MD A                       V+ D +KY D +T +  K      GG++ 
Sbjct: 218 IFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVA 277

Query: 317 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA 376
            + +  +                 GG     +  +   L+     E   Y +  +   + 
Sbjct: 278 IRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEE---YLHYRIGQVKY 334

Query: 377 LASRLVELGYKLVSGGSDNHLVLVDLRPM 405
           L  RL E G  +    +  H V VD + +
Sbjct: 335 LGDRLREAGIPIQY-PTGGHAVFVDCKKL 362

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 4e-07
 Identities = 58/413 (14%), Positives = 115/413 (27%), Gaps = 123/413 (29%)

Query: 71  DYSLGEADPEVCEIITKEKERQFKSLELIAS-ENFTSRAVMEAVGSCLTNKYSEGLPGKR 129
           D        E  + I   K+    +L L  +  +     V + V   L   Y        
Sbjct: 40  DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-------- 91

Query: 130 YYGGNEYI-DELETLCQKRAL--AAFNLDENKWGVNVQPLSGSPAN---FEVYTAI---- 179
                +++   ++T  ++ ++    +    ++   + Q  +    N    + Y  +    
Sbjct: 92  -----KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA--KYNVSRLQPYLKLRQAL 144

Query: 180 --LKPHDRI----MG------------LDLPHGGHLSHG-F-MTPKRRVSGTSI--YFES 217
             L+P   +    +             L       +    F +  K   S  ++    + 
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204

Query: 218 MPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYPRDF----DYPRMRQIADAVGAL 272
           + Y++D + T   D+            KL I    A  R       Y            L
Sbjct: 205 LLYQIDPNWTSRSDHS--------SNIKLRIHSIQAELRRLLKSKPYEN---------CL 247

Query: 273 LMMDMAHISGLVAASVVADPFKY-CDVVTTT--------------THKSLRGPRGGMIFF 317
           L++   +    V  +   + F   C ++ TT              TH SL          
Sbjct: 248 LVLL--N----VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT---L 298

Query: 318 KKDPVLGVELESAINNAVF--P--GLQGGPHNHTIGGLAVCLKHAQSPEFKV-YQNKVVS 372
             D V  + L   ++      P   L   P         + +      +    + N    
Sbjct: 299 TPDEVKSL-LLKYLDCRPQDLPREVLTTNP-------RRLSIIAESIRDGLATWDNWKHV 350

Query: 373 NCRALASRLVELGYKLVSGGSDNHLVLVDLRPM----GI--DGARV-EKILDM 418
           NC  L + ++E           N L   + R M     +    A +   +L +
Sbjct: 351 NCDKL-TTIIESSL--------NVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	520
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	100.0
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	100.0
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	100.0
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	100.0
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	100.0
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	100.0
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	100.0
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	100.0
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	100.0
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.96
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.96
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.96
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.96
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.96
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.96
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.96
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.96
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.96
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.96
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.96
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.96
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.96
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.95
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.95
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.95
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.95
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.95
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.95
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.95
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.95
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.95
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.95
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.95
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.95
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.95
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.95
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.95
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.95
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.95
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.95
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.95
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.95
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.95
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.95
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.95
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.95
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.95
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.94
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.94
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.94
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.94
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.94
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.94
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.94
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.94
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.94
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.94
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.94
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.94
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.94
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.94
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.94
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.94
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.94
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.94
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.94
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.94
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.94
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.94
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.94
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.94
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.94
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.94
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.94
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.93
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.93
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.93
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.93
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.93
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.93
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.93
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.93
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.93
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.93
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.93
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.93
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.93
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.93
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.93
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.93
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.93
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.93
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.93
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.93
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.93
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.92
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.92
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.92
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.92
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.92
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.92
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.92
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.92
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.92
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.92
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.92
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.92
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.92
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.92
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.92
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.92
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.92
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.92
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.92
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.92
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.92
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.91
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.91
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.91
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.91
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.91
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.91
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.91
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.91
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.91
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.91
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.91
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.91
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.91
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.91
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.91
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.91
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.91
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.91
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.9
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.9
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.9
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.9
1svv_A	359	Threonine aldolase; structural genomics, structura	99.9
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.9
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.9
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.9
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.9
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.9
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.9
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.89
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.89
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.89
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.89
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.82
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.89
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.89
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.89
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.89
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.89
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.89
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.88
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.88
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.88
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.88
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.88
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.88
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.88
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.88
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.88
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.87
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.87
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.87
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.87
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.87
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.87
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.87
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.87
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.87
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.87
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.87
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.87
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.86
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.86
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.86
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.86
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.86
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.86
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.86
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.86
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.85
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.85
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.85
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.85
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.84
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.84
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.84
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.84
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.84
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.84
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.84
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.83
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.83
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.83
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.83
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.83
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.82
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.82
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.81
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.8
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.8
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.79
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.79
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.79
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.79
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.78
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.78
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.78
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.77
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.77
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.76
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.76
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.76
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.76
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.75
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.74
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.74
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.74
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.73
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.73
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.73
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.72
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.72
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.72
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.72
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.6
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.49
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.17
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.2
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.04
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	98.95

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=100.00  E-value=2.4e-109  Score=851.37  Aligned_cols=448  Identities=60%  Similarity=1.023  Sum_probs=386.6

Q ss_pred             hhhhccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHH
Q 010008           70 VDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL  149 (520)
Q Consensus        70 ~~~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~  149 (520)
                      .++.|.+.|||++++|++|.+||+++|+||||||++|++|++|++|+|+|||+|||||+|||+||+++|++|.+|++|++
T Consensus        31 ~~~~l~~~Dpei~~~i~~E~~RQ~~~ieLIASEN~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak  110 (490)
T 3ou5_A           31 GQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRAL  110 (490)
T ss_dssp             SCCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHH
T ss_pred             cccchhhhCHHHHHHHHHHHHHHHcCceEecCCCcCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHH
Confidence            46779999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCC
Q 010008          150 AAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV  229 (520)
Q Consensus       150 ~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~i  229 (520)
                      ++||+++++|+|||||+||++||+++|+||++|||+||.+++++|||+|||+.+..++++++|.+|+.++|++|++++.|
T Consensus       111 ~lF~a~~A~w~VNVQP~SGs~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~I  190 (490)
T 3ou5_A          111 EAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLI  190 (490)
T ss_dssp             HHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC-CCCEECBC----------------------------CBCEETTTTEE
T ss_pred             HHhCCCccccCCCCCcCCHHHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999988776788999999999999999999999


Q ss_pred             CHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCC
Q 010008          230 DYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRG  309 (520)
Q Consensus       230 D~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~G  309 (520)
                      |||++++++.++|||+||++.|+||+.+|++++++||+++|++|++|+||++|||+.+++++|+++||||++||||||+|
T Consensus       191 Dyd~~~~~A~~~kPklIi~G~SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~ADvVTtTTHKTLrG  270 (490)
T 3ou5_A          191 DYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRG  270 (490)
T ss_dssp             CHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSSTTCS
T ss_pred             cHHHHHHHHhhcCCCeEEECCccCccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccccceEEeccccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEeeCCC---------cchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 010008          310 PRGGMIFFKKDP---------VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASR  380 (520)
Q Consensus       310 prgG~I~~~~~~---------~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~  380 (520)
                      ||||+|+++++.         ...+++.++|++++||++||+|++|.|||+|+||+++++++|++|++|+++|++.|++.
T Consensus       271 PrGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~  350 (490)
T 3ou5_A          271 ARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADA  350 (490)
T ss_dssp             CSCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence            999999999841         12236889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHH
Q 010008          381 LVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAI  460 (520)
Q Consensus       381 L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~l  460 (520)
                      |.+.|++++++|||+|++++|+++.+++|..+++.|+++||.+|+|.+|+|.+++.++||||||+++|||||+++||++|
T Consensus       351 L~~~G~~vvsGgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~I  430 (490)
T 3ou5_A          351 LLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRV  430 (490)
T ss_dssp             HHHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHH
T ss_pred             HHhCCCeeecCCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCCC
Q 010008          461 ADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV  520 (520)
Q Consensus       461 a~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~~~  520 (520)
                      +++|.+++....+++++.  .++++|+..+..+. ....++++||++|.+||++||+|||
T Consensus       431 A~~I~~~l~~~~~~~~~~--~kl~~f~~~~~~~~-~~~~~i~~lr~~V~~l~~~FP~pg~  487 (490)
T 3ou5_A          431 VDFIDEGVNIGLEVKSKT--AKLQDFKSFLLKDS-ETSQRLANLRQRVEQFARAFPMPGF  487 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTC--CSHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHTTSCCSSC
T ss_pred             HHHHHHHHHhhhhhhhhh--hhhHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHhCCCCCC
Confidence            999999999998887654  46789887653322 1124689999999999999999996

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=100.00  E-value=1.5e-76  Score=632.92  Aligned_cols=447  Identities=60%  Similarity=1.028  Sum_probs=369.6

Q ss_pred             hhhccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHH
Q 010008           71 DYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALA  150 (520)
Q Consensus        71 ~~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~  150 (520)
                      ++.|++.||+++++|.+|.+||++.|+||+|||++|+.|++||++.++++|++|||++|||+|+++++++|++|++++++
T Consensus        32 ~~~l~~~d~~~~~~~~~e~~rq~~~i~lias~n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~  111 (490)
T 2a7v_A           32 QESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALE  111 (490)
T ss_dssp             CCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHH
T ss_pred             cchhhhcCHHHHHHHHHHHHHHHcCceEECCCCCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCC
Q 010008          151 AFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVD  230 (520)
Q Consensus       151 lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD  230 (520)
                      +||+++++|.++|+++||++||.+++.++++|||+|+++++.|+||++|++......+++.|..+++++|+++++++.+|
T Consensus       112 l~g~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD  191 (490)
T 2a7v_A          112 AFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLID  191 (490)
T ss_dssp             HTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBC
T ss_pred             HcCCCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcC
Confidence            99999887877899999999999999999999999999999999999998754333456778777888888887789999


Q ss_pred             HHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCC
Q 010008          231 YDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGP  310 (520)
Q Consensus       231 ~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gp  310 (520)
                      +++|++++++++||+|+++.++||+..|+++|++||+++|++|++|+||++|+++.+..+++++++|++++|+||+|+||
T Consensus       192 ~d~le~~l~~~~~klIi~~~s~~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~~aDiv~~S~hK~l~Gp  271 (490)
T 2a7v_A          192 YNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGA  271 (490)
T ss_dssp             HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCSC
T ss_pred             HHHHHHHHhhcCCcEEEEcCCCCCCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCCCCCEEEECCcccCccc
Confidence            99999999866899999999999999999999999999999999999999999988888888889999999999999999


Q ss_pred             CceEEEeeCCCc---------chhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 010008          311 RGGMIFFKKDPV---------LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRL  381 (520)
Q Consensus       311 rgG~I~~~~~~~---------~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L  381 (520)
                      +||+|+++++..         ..+++.+++++.+|++.||+|+++.++|+++|++++..+++++|.+++.+|+++|++.|
T Consensus       272 ~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L  351 (490)
T 2a7v_A          272 RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADAL  351 (490)
T ss_dssp             SCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            999999998410         01246778888899999999999999999999998877788999999999999999999


Q ss_pred             HHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHH
Q 010008          382 VELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA  461 (520)
Q Consensus       382 ~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la  461 (520)
                      .+.|++++.+++++|++++|+++.++++.++.+.|+++||.++++.+|++.+++.+++||||++++|+||++++||++++
T Consensus       352 ~~~G~~v~~~~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~  431 (490)
T 2a7v_A          352 LERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVV  431 (490)
T ss_dssp             HHTTCEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHH
T ss_pred             HHcCcEEecCCCCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHH
Confidence            99999998877889999999988888999999999999999999999999888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCCC
Q 010008          462 DFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV  520 (520)
Q Consensus       462 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~~~  520 (520)
                      ++|.++++...++|++.  ++++||++.+++++ ....++.+||++|.+||++||+|+|
T Consensus       432 ~~i~~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~  487 (490)
T 2a7v_A          432 DFIDEGVNIGLEVKSKT--AKLQDFKSFLLKDS-ETSQRLANLRQRVEQFARAFPMPGF  487 (490)
T ss_dssp             HHHHHHHHHHHHHHHHC--CSHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHTTSCCSSC
T ss_pred             HHHHHHHHhhhhhhhhh--chhhHHHhhhccCh-hhHHHHHHHHHHHHHHHHhCCCCCc
Confidence            99999999998888766  56899998886543 0112588999999999999999986

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=100.00  E-value=4.9e-68  Score=569.52  Aligned_cols=452  Identities=61%  Similarity=1.012  Sum_probs=396.1

Q ss_pred             chhhhhccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHH
Q 010008           68 SFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKR  147 (520)
Q Consensus        68 ~~~~~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~  147 (520)
                      .++++++...||++++++.+|..+|.+.|+|+++||++|+.|++++.+.+.++|++|||+.+||+|++.++++|+.++++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~a~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~   98 (483)
T 1rv3_A           19 QMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKR   98 (483)
T ss_dssp             HHTTSCHHHHCHHHHHHHHHHHHHHHSSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhcCHHHHHHHHHHHHHhhcCeEEEcCCCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHH
Confidence            34455788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCC
Q 010008          148 ALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG  227 (520)
Q Consensus       148 ~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~  227 (520)
                      ++++||+++++|.++|+++||++||.+++.++++|||+|++++++|++|++|++..+...+.+.|..++.++++++++++
T Consensus        99 ~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~  178 (483)
T 1rv3_A           99 ALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTG  178 (483)
T ss_dssp             HHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTC
T ss_pred             HHHHhCCCcccCceEEEECCcHHHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCC
Confidence            99999999877767899999999999999999999999999999999999999877666677788777888988887789


Q ss_pred             CCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCccc
Q 010008          228 LVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL  307 (520)
Q Consensus       228 ~iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l  307 (520)
                      .+|+|+|++++++.+||+|+++.+++++.+|+++|++||+++|++|++|++|+.|+++.+.+++|++++|++++|+||+|
T Consensus       179 ~iD~d~le~~i~~~~tklIi~~~sn~~~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l  258 (483)
T 1rv3_A          179 YIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTL  258 (483)
T ss_dssp             SBCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGG
T ss_pred             cCCHHHHHHHHhhcCCcEEEEeCCcCCCcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcccC
Confidence            99999999999845999999966677778899999999999999999999999999988888888888999999999999


Q ss_pred             CCCCceEEEeeCCCc---------chhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 010008          308 RGPRGGMIFFKKDPV---------LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA  378 (520)
Q Consensus       308 ~GprgG~I~~~~~~~---------~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~  378 (520)
                      +|||||+|+++++..         ..+++.++++...+|+.+|+|+++.++++++|++++..++++++.+++.++++++.
T Consensus       259 ~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~  338 (483)
T 1rv3_A          259 RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALS  338 (483)
T ss_dssp             CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH
Confidence            999999999998421         00124556677778888999999999999999998877788999999999999999


Q ss_pred             HHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHH
Q 010008          379 SRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFV  458 (520)
Q Consensus       379 ~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~  458 (520)
                      +.|.+.|++++.+++++|+++++++..++++.++.+.|+++||.++++++||+.+++.+++||||++.+|+||++++|++
T Consensus       339 ~~L~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~  418 (483)
T 1rv3_A          339 AALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQ  418 (483)
T ss_dssp             HHHHHTTCEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHH
T ss_pred             HHHHhcCCEeccCCCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHH
Confidence            99999999998876778999999987778889999999999999998888987656678999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc-ccchhhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCCC
Q 010008          459 AIADFIHEGVEITLEAKKLVQ-GSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV  520 (520)
Q Consensus       459 ~la~~i~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~~~  520 (520)
                      +++++|.++++...+++.+.. .+++++|++.+.++. .....++++|++|.+||++||+|+|
T Consensus       419 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  480 (483)
T 1rv3_A          419 KVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDE-KHQRAVRALRQEVESFAALFPLPGL  480 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHSCH-HHHHHHHHHHHHHHHHHTTSCCCSS
T ss_pred             HHHHHHHHHHHhccchhccccccchhhHHHHhhcccc-chhHHHHHHHHHHHHHHHhCCCCCc
Confidence            999999999987555443331 236889998886432 0012688999999999999999975

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=100.00  E-value=7.6e-54  Score=454.96  Aligned_cols=408  Identities=49%  Similarity=0.791  Sum_probs=350.9

Q ss_pred             hhhccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHH
Q 010008           71 DYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALA  150 (520)
Q Consensus        71 ~~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~  150 (520)
                      ..++...+|++++.+.++.+++.+.|+|++++|+++|.|++++.+.+.++|.+|||+.|||.|++..+.+|+++++++++
T Consensus        23 ~~~l~~~~~~i~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~  102 (447)
T 3h7f_A           23 SAPLAEVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKA  102 (447)
T ss_dssp             GCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHhCceeEecCCCCCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHH
Confidence            45678889999999999999999999999999999999999999999899999999999999999999999888899999


Q ss_pred             HcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCC
Q 010008          151 AFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVD  230 (520)
Q Consensus       151 lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD  230 (520)
                      ++|++.    ++|+++||++||.+++.++++|||+|+++++.|++|++++.     .+.+.|..+..++++++++++.+|
T Consensus       103 ~~g~~~----~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~d  173 (447)
T 3h7f_A          103 LFGAEF----ANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGM-----RLNFSGKLYENGFYGVDPATHLID  173 (447)
T ss_dssp             HHTCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTC-----TTSHHHHSSEEEEECCCTTTCSCC
T ss_pred             HcCCCc----eEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhh-----hhhhcCCeeEEEEcCcCcccCCcC
Confidence            999986    46768999999999999999999999999999999877765     234456656778888877778999


Q ss_pred             HHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCC
Q 010008          231 YDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGP  310 (520)
Q Consensus       231 ~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gp  310 (520)
                      +++++++++..+|++|+++.++||+..++++|+++|+++|++||+|++|+.|++..+..+.+++++|++++|+||+|+||
T Consensus       174 ~~~l~~~i~~~~~~~i~~~~~~~~~~~~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~~~~di~~~s~sK~l~G~  253 (447)
T 3h7f_A          174 MDAVRATALEFRPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHKTLGGG  253 (447)
T ss_dssp             HHHHHHHHHHHCCSEEEEECSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSGGGCCC
T ss_pred             HHHHHHHHHhcCCeEEEEcCCCCCCccCHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCCCCCcEEEecCCcCCCCC
Confidence            99999999766899999988999988899999999999999999999999998877776777778999999999999999


Q ss_pred             CceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-----C
Q 010008          311 RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-----G  385 (520)
Q Consensus       311 rgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-----G  385 (520)
                      +||++++++      ++.+.++...+++.+|+++...++++++++..+..++++++.+++.++++++.+.|.+.     |
T Consensus       254 ~gG~i~~~~------~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g  327 (447)
T 3h7f_A          254 RSGLIVGKQ------QYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAG  327 (447)
T ss_dssp             SCEEEEECG------GGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTT
T ss_pred             CeEEEEECH------HHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence            999999988      67777777777888899998888888888888766678889999999999999999887     9


Q ss_pred             CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHH
Q 010008          386 YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  464 (520)
Q Consensus       386 ~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i  464 (520)
                      ++++.+++++++++++++..++++..+.+.|++.||.++.+.+|++. ++..++++|||++.+|++|++++|+++++++|
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l  407 (447)
T 3h7f_A          328 VSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADII  407 (447)
T ss_dssp             CEEGGGSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHH
T ss_pred             eEEecCCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHH
Confidence            99887556788889999877788888999999999999988888864 56778899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCC
Q 010008          465 HEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIP  518 (520)
Q Consensus       465 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~  518 (520)
                      .++++..                    ++.     +++++|++|.+|++.||++
T Consensus       408 ~~~l~~~--------------------~~~-----~~~~~~~~v~~~~~~~~~~  436 (447)
T 3h7f_A          408 ATALATG--------------------SSV-----DVSALKDRATRLARAFPLY  436 (447)
T ss_dssp             HHHHHSG--------------------GGC-----CHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHhcc--------------------Cch-----hHHHHHHHHHHHHHhCCCC
Confidence            9988642                    012     2789999999999999994

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=100.00  E-value=6.3e-50  Score=418.72  Aligned_cols=409  Identities=46%  Similarity=0.768  Sum_probs=344.7

Q ss_pred             hhccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 010008           72 YSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA  151 (520)
Q Consensus        72 ~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~l  151 (520)
                      ..+..++|++++.+.+|..++.+.|+|++++|++++.|++++...+.+.|.+|||+.+||.+....+++|+.++++++++
T Consensus         4 ~~~~~~~~~i~~~~~~e~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~   83 (417)
T 3n0l_A            4 MSLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKL   83 (417)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cchhhcCHHHHHHHHHHHHHHhcCeeeecccCCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHH
Confidence            34778999999999998888889999999999999999999999998899999999999999999999999999999999


Q ss_pred             cCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCH
Q 010008          152 FNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY  231 (520)
Q Consensus       152 fg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~  231 (520)
                      +|++++    +|.++||++|+.+++.++++|||+|+++++.|.++..++.     .+...|..+.+++++++ +++.+|+
T Consensus        84 ~g~~~~----~i~~~sGt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~-~~~~~d~  153 (417)
T 3n0l_A           84 FNCKFA----NVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGA-----KVSSSGKMYESCFYGVE-LDGRIDY  153 (417)
T ss_dssp             HTCSEE----ECCCSSHHHHHHHHHHHHSCTTCEEEEECC---------------------CCSEEEEECCC-TTSSCCH
T ss_pred             hCCCCc----ceEeccHHHHHHHHHHHhcCCCCEEEecccccccccchhh-----hhhhhcceeeeEeccCC-CCCCcCH
Confidence            999863    5777999999999999999999999999999988776554     23345555677788777 6788999


Q ss_pred             HHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCC
Q 010008          232 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPR  311 (520)
Q Consensus       232 d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gpr  311 (520)
                      ++|++++++.+|++|+++.++|+...|+++|+++|+++|++||+|++|+.|..+.+..+.++.++|++++|+||+|+|||
T Consensus       154 ~~l~~~i~~~~~~~v~~~~~~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~  233 (417)
T 3n0l_A          154 EKVREIAKKEKPKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPR  233 (417)
T ss_dssp             HHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTTTCSEEEEESSTTTCSCS
T ss_pred             HHHHHHHHhcCCeEEEECCcccCccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccccceEEEeeCccccCCCC
Confidence            99999998558999999888888899999999999999999999999999988777666666678999999999999999


Q ss_pred             ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecC
Q 010008          312 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG  391 (520)
Q Consensus       312 gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~  391 (520)
                      ||+++++++     ++.+.+....+++..++++...+++++.++......+++++.+++.++++.+.+.|.+.|+++..+
T Consensus       234 ~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~  308 (417)
T 3n0l_A          234 GGIIMTNDE-----ELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRKFKLVSD  308 (417)
T ss_dssp             CEEEEESCH-----HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGG
T ss_pred             eeEEEECCH-----HHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCceeccC
Confidence            999999853     677777776677778888999998888888876656778999999999999999999999998775


Q ss_pred             CCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          392 GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       392 gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +...+++++++...+++...+.+.|+++||.++....|+.. +++.++++|+|++.+++++++++|++++++.|.++++.
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~  388 (417)
T 3n0l_A          309 GTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDD  388 (417)
T ss_dssp             SCSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred             CCCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence            55678888888777778889999999999999877777765 56677899999999999999999999999999998864


Q ss_pred             HHHHHHhhcccchhhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCC
Q 010008          471 TLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG  519 (520)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~~  519 (520)
                      .                    .+.    ..+.+++++|.+|+++||+|+
T Consensus       389 ~--------------------~~~----~~~~~~~~~v~~~~~~~~~~~  413 (417)
T 3n0l_A          389 V--------------------NNE----KLQENIKQELKKLASNFIIYE  413 (417)
T ss_dssp             T--------------------TCH----HHHHHHHHHHHHHHTTCCCCS
T ss_pred             c--------------------cch----hhHHHHHHHHHHHHhcCCCcc
Confidence            2                    011    368899999999999999975

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=100.00  E-value=1.9e-47  Score=399.95  Aligned_cols=409  Identities=48%  Similarity=0.788  Sum_probs=323.0

Q ss_pred             ccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC
Q 010008           74 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN  153 (520)
Q Consensus        74 l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg  153 (520)
                      +...+|++++++.++.+++.+.+.+++++|+++|.|.+++...+.+.|..|||+.+||.+..+.+.+++.+++++++++|
T Consensus        11 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~   90 (420)
T 3gbx_A           11 IADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFG   90 (420)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHT
T ss_pred             hhhcCHHHHHHHHHHHHhhhcceeeeccCCCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhC
Confidence            67889999999999888888999999999999999999999999888888999999999888888889889899999999


Q ss_pred             CCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHH
Q 010008          154 LDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDM  233 (520)
Q Consensus       154 ~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~  233 (520)
                      ++++    +|.++||++|+.+++.++++|||+|++.++.|++++.++.     .+...|..+..++++++ +++.+|+++
T Consensus        91 ~~~~----~v~~~sGs~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~-~~~~~d~~~  160 (420)
T 3gbx_A           91 ADYA----NVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHGS-----PVNFSGKLYNIVPYGID-ESGKIDYDE  160 (420)
T ss_dssp             CSEE----ECCCSSHHHHHHHHHHHHCCTTCEEEEEEEC-----------------CHHHHSEEEEEEEC-TTCSCCHHH
T ss_pred             CCCc----eeEecCcHHHHHHHHHHhcCCCCEEEecchhhcceeccch-----hhhhcccceeEEeccCC-ccCCcCHHH
Confidence            9864    5667999999999999999999999999999988765554     23344555566777777 568899999


Q ss_pred             HHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCce
Q 010008          234 LEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG  313 (520)
Q Consensus       234 le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~GprgG  313 (520)
                      |++++++.++++|+++.|++|+..|+++|+++|+++|++||+|++|+.|....+..+.++..+|++++|+||++.||+||
T Consensus       161 l~~~i~~~~~~~v~~~~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~gg  240 (420)
T 3gbx_A          161 MAKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRGG  240 (420)
T ss_dssp             HHHHHHHHCCSEEEECCTTCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTTTSSEEEEESSGGGCSCSCE
T ss_pred             HHHHHHhcCCeEEEEecCccCCccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccccCCEEEeecccCCCCCCce
Confidence            99999876799999988999999999999999999999999999998888766655555667899999999999999999


Q ss_pred             EEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCC
Q 010008          314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS  393 (520)
Q Consensus       314 ~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt  393 (520)
                      ++++++..   .++.+.++...+++.+++++...+++++.++......+++++.+++.++++++.+.|.+.|++++.++.
T Consensus       241 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  317 (420)
T 3gbx_A          241 LILAKGGD---EELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGGT  317 (420)
T ss_dssp             EEEESSCC---HHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC
T ss_pred             EEEEcCCc---HHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCeeccCCC
Confidence            99998721   046666666667777888888888888888877655667888999999999999999999999877545


Q ss_pred             CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHHH
Q 010008          394 DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITL  472 (520)
Q Consensus       394 ~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~~  472 (520)
                      ..+++++++...+.+...+.+.|+++||.+.....|++. .++.+.++||+++..++++++++|++++++.|+++++.. 
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~-  396 (420)
T 3gbx_A          318 ENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNI-  396 (420)
T ss_dssp             SSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT-
T ss_pred             CCeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhCc-
Confidence            567888888766677888999999999999876667654 456678899999999999999999999999999988642 


Q ss_pred             HHHHhhcccchhhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCC
Q 010008          473 EAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG  519 (520)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~~  519 (520)
                                         ++.    ..+++++++|.+|+++||+++
T Consensus       397 -------------------~~~----~~~~~~~~~~~~~~~~~~~~~  420 (420)
T 3gbx_A          397 -------------------NDE----ATIERVKAKVLDICARFPVYA  420 (420)
T ss_dssp             -------------------TCH----HHHHHHHHHHHHHHHHSCSCC
T ss_pred             -------------------ccc----hhHHHHHHHHHHHHHhCCCCC
Confidence                               011    368899999999999999874

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=100.00  E-value=1.4e-46  Score=394.02  Aligned_cols=417  Identities=49%  Similarity=0.766  Sum_probs=323.4

Q ss_pred             hhhhhccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHH
Q 010008           69 FVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA  148 (520)
Q Consensus        69 ~~~~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~  148 (520)
                      ++..++...+|+++..+.++..++.+.++|++++|+.++.|++++...+.+.|..|+|+.+||.+....+.+++++++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   87 (425)
T 3ecd_A            8 FFSQSLAERDASVRGAILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERV   87 (425)
T ss_dssp             HHHCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHH
T ss_pred             HHHHHHHhhCHHHHHHHHHHHHHHhcceeeecccCCCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHH
Confidence            45677888999999999888888888999999999999999999999998899899999999998887778888888899


Q ss_pred             HHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCC
Q 010008          149 LAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL  228 (520)
Q Consensus       149 ~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~  228 (520)
                      ++++|++.    ++|.+++|++|+..++.++++|||+|++.++.|++++.++.     .....|..+..++++++++++.
T Consensus        88 ~~~~~~~~----~~v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~  158 (425)
T 3ecd_A           88 KRLFNAGH----ANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGA-----KPALSGKWFNALQYGVSRDTML  158 (425)
T ss_dssp             HHHHTCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECC-----------------------CEEEEECCCTTTSS
T ss_pred             HHHhCCCC----ceeecCchHHHHHHHHHHccCCCCEEEEcccccccceecch-----hhhhcccceeeeecCCCcccCc
Confidence            99999986    35667899999999999999999999999999887654443     2234555567778877766789


Q ss_pred             CCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccC
Q 010008          229 VDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLR  308 (520)
Q Consensus       229 iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~  308 (520)
                      +|+++|+++++..+|++|+++.++||...++++|+++|+++|++||+|++|+.|....+....+++.+|++++|+||+|+
T Consensus       159 ~d~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~l~  238 (425)
T 3ecd_A          159 IDYDQVEALAQQHKPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLR  238 (425)
T ss_dssp             CCHHHHHHHHHHHCCSEEEEECSCCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGC
T ss_pred             cCHHHHHHHHhhcCCcEEEEccccCCCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhcCcEEEecCCcccC
Confidence            99999999998558999999988999999999999999999999999999999887766555555568999999999999


Q ss_pred             CCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEE
Q 010008          309 GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL  388 (520)
Q Consensus       309 GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v  388 (520)
                      |||+|+++++++     ++.+.+....+++.+++++...+++++.++......+++++.+++.++++++.+.|.+.|+++
T Consensus       239 g~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~  313 (425)
T 3ecd_A          239 GPRGGFVLTNDE-----EIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGGVDL  313 (425)
T ss_dssp             CCSCEEEEESCH-----HHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             CCCcEEEEeCCH-----HHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence            999999999864     576777766677777788888888888787766656678899999999999999999999998


Q ss_pred             ecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          389 VSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       389 ~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      +.++...+++++++.+.+.+...+.+.|+++||.+.....||+. +++.++++|+|++.+++++++++|++++++.|.++
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~  393 (425)
T 3ecd_A          314 VTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEV  393 (425)
T ss_dssp             GGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             ccCCCCceEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHH
Confidence            86544567788888765667888999999999999866667754 45567899999999999999999999999999998


Q ss_pred             HHHHHHHHHhhcccchhhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCC
Q 010008          468 VEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIP  518 (520)
Q Consensus       468 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~  518 (520)
                      ++....      ++         +.+.    ..+++++++|.+||+.||+.
T Consensus       394 l~~~~~------~~---------~~~~----~~~~~~~~~~~~~~~~~~~~  425 (425)
T 3ecd_A          394 FEALRT------NP---------EGDH----ATEQRVRREIFALCERFPIY  425 (425)
T ss_dssp             HHHHHH------CT---------TCCH----HHHHHHHHHHHHHHHTSCCC
T ss_pred             Hhcccc------cc---------ccCc----hhHHHHHHHHHHHHhcCCCC
Confidence            875310      10         1112    36789999999999999974

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=100.00  E-value=2.2e-41  Score=352.82  Aligned_cols=402  Identities=50%  Similarity=0.809  Sum_probs=318.8

Q ss_pred             cccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC
Q 010008           75 GEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL  154 (520)
Q Consensus        75 ~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~  154 (520)
                      ...||++++.+.++..++...|++..++|+.++.|++++...+.+.+..+||+.+++.|.+..+.+|+.+++++++++|+
T Consensus         5 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~   84 (407)
T 2dkj_A            5 LKRDEALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGA   84 (407)
T ss_dssp             -CCCHHHHHHHHHHHHHHHTSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             cccCHHHHHHHHHHHHHhhcceeeccCCCCCCHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCC
Confidence            45689999999999888888999999999999999999999987666678888777777777778888888899999999


Q ss_pred             CCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHH
Q 010008          155 DENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDML  234 (520)
Q Consensus       155 ~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~l  234 (520)
                      +++    +|.++||++|+.+++.++++|||+|+++++.|++++....     .+...|..+..++++++++++.+|++++
T Consensus        85 ~~~----~i~~~sGt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~d~~~l  155 (407)
T 2dkj_A           85 AWA----NVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHGS-----RVNFSGKLYKVVSYGVRPDTELIDLEEV  155 (407)
T ss_dssp             SEE----ECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTC-----TTSHHHHHSEEEEECCCTTTSSCCHHHH
T ss_pred             Ccc----eEEecchHHHHHHHHHHhcCCCCEEEEecccccCccchHH-----HHHhcCceEEEEecCCCcccCccCHHHH
Confidence            863    5667999999999999999999999999998876642221     2334555446667666655688999999


Q ss_pred             HHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCceE
Q 010008          235 EKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGM  314 (520)
Q Consensus       235 e~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~GprgG~  314 (520)
                      ++.+++.++++|+++.|+||...|+++|.++|+++|+++|+|++|..|+...+....++..+|++++|+||+|+|+++|+
T Consensus       156 ~~~l~~~~~~~v~~~~p~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~G~  235 (407)
T 2dkj_A          156 RRLALEHRPKVIVAGASAYPRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGL  235 (407)
T ss_dssp             HHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSCEE
T ss_pred             HHHHhhcCCeEEEEeccccCCCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCceE
Confidence            99998558999999888899888999999999999999999999988777666544444468999999999999999999


Q ss_pred             EEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCC
Q 010008          315 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD  394 (520)
Q Consensus       315 I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~  394 (520)
                      ++++++     ++.+.+.....++..++++...++++..+++.....++++..+++.++++++.+.|.+.|++++.+...
T Consensus       236 ~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  310 (407)
T 2dkj_A          236 ILSNDP-----ELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRGYRIVTGGTD  310 (407)
T ss_dssp             EEESCH-----HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCS
T ss_pred             EEECCH-----HHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCceeecCCCC
Confidence            999832     677766655455556777777776777778775555668888999999999999999889988753234


Q ss_pred             CeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHHHH
Q 010008          395 NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLE  473 (520)
Q Consensus       395 ~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~~~  473 (520)
                      .+++++++...+.+...+.+.|.+.||.+..+..|.+. .+..++++|++.+.+|+++.+++|++++++.|+++++.   
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~---  387 (407)
T 2dkj_A          311 NHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE---  387 (407)
T ss_dssp             SSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH---
T ss_pred             ceEEEEECcccCCCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc---
Confidence            56778887644557788888899999999765433221 22346789999876665667899999999999887652   


Q ss_pred             HHHhhcccchhhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCC
Q 010008          474 AKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIP  518 (520)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~  518 (520)
                                         ++      .+.++++|.+|..+||+|
T Consensus       388 -------------------~~------~~~~~~~~~~~~~~~~~~  407 (407)
T 2dkj_A          388 -------------------GP------SEALREEVRRLALAHPMP  407 (407)
T ss_dssp             -------------------CC------CHHHHHHHHHHHHTSCCC
T ss_pred             -------------------Cc------hHHHHHHHHHHHHhcCCC
Confidence                               01      145888999999999985

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=100.00  E-value=7.7e-41  Score=348.45  Aligned_cols=401  Identities=50%  Similarity=0.820  Sum_probs=316.0

Q ss_pred             hccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHc
Q 010008           73 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF  152 (520)
Q Consensus        73 ~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lf  152 (520)
                      .+..+||+++..+.++..++.+.+.+.+++++.++.|++++...+.++|..|||+.+||.|.+...++|+.+++++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~   82 (405)
T 2vi8_A            3 YLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLF   82 (405)
T ss_dssp             SHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhCHHHHHHHHHHHHHhhcceeeccCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHh
Confidence            35668999999999888887777878889999999999999999877777788888888887778889988889999999


Q ss_pred             CCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHH
Q 010008          153 NLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYD  232 (520)
Q Consensus       153 g~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d  232 (520)
                      |++++    +|.++||++|+.+++.++++|||+|+++++.|+++...+.     .+...|..++++.++++++++.+|++
T Consensus        83 g~~~~----~i~~~sGt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~d~~  153 (405)
T 2vi8_A           83 GAEHA----NVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGS-----PVNFSGVQYNFVAYGVDPETHVIDYD  153 (405)
T ss_dssp             TCSEE----ECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTC-----TTSHHHHHSEEEEECBCTTTCSBCHH
T ss_pred             CCCce----EEEecCcHHHHHHHHHHhcCCCCEEEEecccccchhcccc-----hhhhccceeEEEecccccccCCcCHH
Confidence            99853    4667899999999999999999999999988776543221     12234544467777776556889999


Q ss_pred             HHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc
Q 010008          233 MLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG  312 (520)
Q Consensus       233 ~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg  312 (520)
                      ++++++++.++++|+++.++++...|+++|+++|+++|++||+|++|..|....+....++.++|++++|+||++.||.|
T Consensus       154 ~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~g  233 (405)
T 2vi8_A          154 DVREKARLHRPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG  233 (405)
T ss_dssp             HHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC
T ss_pred             HHHHHHHhcCCeEEEEeCCCCCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCC
Confidence            99999986589999987677776779999999999999999999999877655444443344689999999999988889


Q ss_pred             eEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCC
Q 010008          313 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG  392 (520)
Q Consensus       313 G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~g  392 (520)
                      |++++++      ++.+.+.....++..++++...++++..+++.....++++..+++.++++++.+.|.+.|++++.+.
T Consensus       234 G~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~  307 (405)
T 2vi8_A          234 GMILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGG  307 (405)
T ss_dssp             EEEEECH------HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS
T ss_pred             eEEEEcH------HHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeEecCC
Confidence            9999986      6777666554555667778888888777887765556688889999999999999998899887643


Q ss_pred             CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          393 SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       393 t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      ...+++++++...+.+...+.+.|.+.||.+..+..|.+. ++..++++|++++.++++.++++|++++++.|.++++..
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~  387 (405)
T 2vi8_A          308 TDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV  387 (405)
T ss_dssp             CSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred             CCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhcc
Confidence            3456778887644567788888999999999765433222 233467899998877777788999999999998876521


Q ss_pred             HHHHHhhcccchhhhhcccCCCCccchHHHHHHHHHHHHHH
Q 010008          472 LEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALT  512 (520)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  512 (520)
                                         . ++    ..+..+|++|.+|+
T Consensus       388 -------------------~-~~----~~~~~~~~~~~~~~  404 (405)
T 2vi8_A          388 -------------------G-SE----QALEEARQRVAALT  404 (405)
T ss_dssp             -------------------T-CH----HHHHHHHHHHHHHH
T ss_pred             -------------------c-cc----ccHHHHHHHHHHhh
Confidence                               1 11    24678999999987

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.96  E-value=4.6e-28  Score=249.43  Aligned_cols=330  Identities=16%  Similarity=0.116  Sum_probs=235.2

Q ss_pred             ceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCC--CCCceeeecCChHHHHH
Q 010008           96 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE--NKWGVNVQPLSGSPANF  173 (520)
Q Consensus        96 i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~--~~~~~~V~~~sGs~A~~  173 (520)
                      +.+.++..++++.|++++...+.+.+           +.. ...+...+++++++++|+++  ++   .+...+|++|+.
T Consensus         4 ~~~~~gp~~~~~~v~~a~~~~~~~~~-----------~~~-~~~~~~~~~~~la~~~~~~~~~~~---v~~~~g~t~al~   68 (384)
T 3zrp_A            4 LLLHVGPTTIKEDVLVAGLENNVGFT-----------SKE-FVEALAYSLKGLRYVMGASKNYQP---LIIPGGGTSAME   68 (384)
T ss_dssp             --CCSSCSCCCHHHHHHTTCCSCCTT-----------SHH-HHHHHHHHHHHHHHHHTCCTTSEE---EEEESCHHHHHH
T ss_pred             eeccCCCCCCCHHHHHHhhccccccc-----------cHH-HHHHHHHHHHHHHHHhCCCCCCcE---EEEcCCcHHHHH
Confidence            45677788899999999987654221           111 23344456689999999987  42   133345569999


Q ss_pred             HHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC
Q 010008          174 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  253 (520)
Q Consensus       174 ~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~  253 (520)
                       ++.++++|||+|++++++|.+.   .+.   ..+...|.  +++.++++. ++.+|++++++++++.++++|+++.++|
T Consensus        69 -~~~~~~~~gd~vi~~~~~~~~~---~~~---~~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~i~~~~~~~v~~~~~~n  138 (384)
T 3zrp_A           69 -SVTSLLKPNDKILVVSNGVFGD---RWE---QIFKRYPV--NVKVLRPSP-GDYVKPGEVEEEVRKSEYKLVALTHVET  138 (384)
T ss_dssp             -HGGGGCCTTCEEEEECSSHHHH---HHH---HHHTTSSC--EEEEECCST-TCCCCHHHHHHHHHHSCEEEEEEESEET
T ss_pred             -HHHhhcCCCCEEEEecCCcchH---HHH---HHHHHcCC--cEEEecCCC-CCCCCHHHHHHHHHhCCCcEEEEeCCCC
Confidence             9999999999999998765331   110   11233454  666777763 6789999999999887899999998888


Q ss_pred             CC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHh
Q 010008          254 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA  330 (520)
Q Consensus       254 p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~  330 (520)
                      |+  ..|+++|.++|+++|++||+|++|..+....+...   .++|++++|+||++.|+.| |++++++      ++.++
T Consensus       139 ptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~---~~~d~~~~s~~K~~~~~~g~g~~~~~~------~~~~~  209 (384)
T 3zrp_A          139 STGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEE---WNVDVYLTASQKALGSAAGLGLLLLSP------KALSI  209 (384)
T ss_dssp             TTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTT---TTCSEEEEETTSTTCCCSSEEEEEECH------HHHHH
T ss_pred             CCceECcHHHHHHHHHhcCCEEEEECcccccCccccccc---cCCCEEEecCcccccCCCceEEEEECH------HHHHH
Confidence            76  78999999999999999999999886654222111   1589999999999977665 9999987      55444


Q ss_pred             h-cccC---------------------CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEE
Q 010008          331 I-NNAV---------------------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL  388 (520)
Q Consensus       331 i-~~~~---------------------~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v  388 (520)
                      + ....                     .....|+++...++++..+++.....++++..+++.++++.+.+.|.+.|+++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~  289 (384)
T 3zrp_A          210 LDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLEI  289 (384)
T ss_dssp             HHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCB
T ss_pred             hcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCeE
Confidence            4 1000                     11112577788888887788766544567888999999999999999888887


Q ss_pred             ecCC---CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHH
Q 010008          389 VSGG---SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  465 (520)
Q Consensus       389 ~~~g---t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~  465 (520)
                      ..+.   ...+++++.+..  .+..++.+.|.+.||.+..    |...+.  +++||+....+    +++|++++++.|+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~----g~~~~~--~~iRi~~~~~~----~~e~i~~~~~~l~  357 (384)
T 3zrp_A          290 VARRPESYSNTVTGVILKV--ADPQKVLAGTVNEGVEFAP----GVHPAF--KYFRIGHMGWV----TPNDAIIAISVIE  357 (384)
T ss_dssp             SCSSGGGBCSSEEEEECSS--SCHHHHHHHHHTTTCCCEE----CCCTTC--CEEEEECCSSC----CHHHHHHHHHHHH
T ss_pred             ccCcccccCccEEEEECCC--CCHHHHHHHHHHCCEEEec----CCCCCc--CEEEEeccccC----CHHHHHHHHHHHH
Confidence            6542   123455666643  5778888888888999853    331111  78999976544    4899999999999


Q ss_pred             HHHHHH
Q 010008          466 EGVEIT  471 (520)
Q Consensus       466 ~~l~~~  471 (520)
                      ++++..
T Consensus       358 ~~l~~~  363 (384)
T 3zrp_A          358 RTLRKL  363 (384)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            988753

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.96  E-value=5.3e-28  Score=246.20  Aligned_cols=324  Identities=13%  Similarity=0.041  Sum_probs=231.5

Q ss_pred             ceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecC-ChHHHHHH
Q 010008           96 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPL-SGSPANFE  174 (520)
Q Consensus        96 i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~-sGs~A~~~  174 (520)
                      +.+.++..++++.|++++...+...        +++   .. .......++++++++|++++    +|..+ +|++|+..
T Consensus         3 ~l~~~~p~~~~~~v~~a~~~~~~~~--------~~~---~~-~~~~~~l~~~la~~~g~~~~----~i~~~~g~t~a~~~   66 (352)
T 1iug_A            3 WLLTPGPVRLHPKALEALARPQLHH--------RTE---AA-REVFLKARGLLREAFRTEGE----VLILTGSGTLAMEA   66 (352)
T ss_dssp             EECSSSSCCCCHHHHHHHHSCCCCT--------TSH---HH-HHHHHHHHHHHHHHHTCSSE----EEEEESCHHHHHHH
T ss_pred             ccccCCCCCCCHHHHHHhccCCCCc--------cCH---HH-HHHHHHHHHHHHHHhCCCCc----eEEEcCchHHHHHH
Confidence            5667788889999999998766421        112   11 12223456889999999864    33344 56699999


Q ss_pred             HHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC
Q 010008          175 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP  254 (520)
Q Consensus       175 ~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p  254 (520)
                      ++.++++|||+|+++++.|.++.  ..    ..+...|.  +++.++++ +++.+|++++++   + ++++|++++++||
T Consensus        67 ~~~~~~~~gd~vl~~~~~~~~~~--~~----~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~---~-~~~~v~~~~~~np  133 (352)
T 1iug_A           67 LVKNLFAPGERVLVPVYGKFSER--FY----EIALEAGL--VVERLDYP-YGDTPRPEDVAK---E-GYAGLLLVHSETS  133 (352)
T ss_dssp             HHHHHCCTTCEEEEEECSHHHHH--HH----HHHHHTTC--EEEEEECC-TTCCCCTTTSCC---S-SCSEEEEESEETT
T ss_pred             HHHhccCCCCeEEEEeCCchhHH--HH----HHHHHcCC--ceEEEeCC-CCCCCCHHHHhc---c-CCcEEEEEEecCC
Confidence            99999999999999998765532  00    01122354  66666666 356789988876   3 7999999988887


Q ss_pred             C--CCCHHHHHHHHHHh--CCEEEEechhhcccccccccCCCCC--cccEEEeccCcccCCCCc-eEEEeeCCCcchhhH
Q 010008          255 R--DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL  327 (520)
Q Consensus       255 ~--~~d~~~i~~ia~~~--g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l  327 (520)
                      +  ..|+++|.++|+++  |+++++|++|..|....+     +.  ++|++++|+||++.||.| |++++++      ++
T Consensus       134 tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~-----~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~------~~  202 (352)
T 1iug_A          134 TGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVA-----LEAMGVDAAASGSQKGLMCPPGLGFVALSP------RA  202 (352)
T ss_dssp             TTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCC-----SGGGTCSEEEEESSSTTCCCSCEEEEEECH------HH
T ss_pred             cceecCHHHHHHHHHhhCCCCEEEEECCccccCccee-----ccccCeeEEEecCcccccCCCceeEEEECH------HH
Confidence            6  78999999999999  999999999876543221     22  579999999999988876 9999987      44


Q ss_pred             HHhh---------c----ccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCC
Q 010008          328 ESAI---------N----NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSD  394 (520)
Q Consensus       328 ~~~i---------~----~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~  394 (520)
                      .+++         .    ........++++...++++..+++.... ++++..+++.++++++.+.|++.|+++..+...
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  281 (352)
T 1iug_A          203 LERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLP-RLEEHLALKAWQNALLYGVGEEGGLRPVPKRFS  281 (352)
T ss_dssp             HHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHTTCEESCSSBC
T ss_pred             HHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCcccccccC
Confidence            3331         1    0001122456677777777778877653 367888899999999999998888887654213


Q ss_pred             CeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          395 NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       395 ~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      .+++++.+. .+.+..++.+.|.+.||.+..+.     .+..++++||++...+    +++|++++++.|+++++.
T Consensus       282 ~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~~~-----~~~~~~~iRi~~~~~~----~~~~i~~~~~~l~~~~~~  347 (352)
T 1iug_A          282 PAVAAFYLP-EGVPYARVKEAFAQRGAVIAGGQ-----GPLKGKVFRLSLMGAY----DRYEALGVAGMFREVLEE  347 (352)
T ss_dssp             TTCEEEECC-TTCCHHHHHHHHHTTTEECEECC-----GGGTTTEEEECCCSSC----CHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEcC-CCCCHHHHHHHHHHCCEEEEeCC-----CccCCCEEEEEccccC----CHHHHHHHHHHHHHHHHH
Confidence            456677764 25677888888888899985432     1223578999987544    489999999999988753

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.96  E-value=1.9e-27  Score=247.48  Aligned_cols=334  Identities=15%  Similarity=0.121  Sum_probs=237.7

Q ss_pred             cceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHH
Q 010008           95 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE  174 (520)
Q Consensus        95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~  174 (520)
                      .+.+.++...+++.|++++.+.+.+.+           ...+. .+...+++++++++|++.++.  .+...||++|+.+
T Consensus        14 ~~~~~pgp~~~~~~v~~a~~~~~~~~~-----------~~~~~-~~~~~~~~~la~~~~~~~~~~--v~~~~sgt~al~~   79 (411)
T 3nnk_A           14 RLLMGPGPINADPRVLRAMSSQLIGQY-----------DPAMT-HYMNEVMALYRGVFRTENRWT--MLVDGTSRAGIEA   79 (411)
T ss_dssp             CEEESSSCCCCCHHHHHHHTSCCCCTT-----------CHHHH-HHHHHHHHHHHHHHTCCCSEE--EEEESCHHHHHHH
T ss_pred             ceeecCCCCCCCHHHHHHhhccccccc-----------cHHHH-HHHHHHHHHHHHHhCCCCCcE--EEECCCcHHHHHH
Confidence            356667777889999999976542211           11222 333455689999999986532  2344567899999


Q ss_pred             HHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC
Q 010008          175 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP  254 (520)
Q Consensus       175 ~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p  254 (520)
                      ++.++++|||+|++.++.|.+..   +   ...+...|.  +++.++++ +++.+|+++|++++++.++++|++++++||
T Consensus        80 ~~~~~~~~gd~Vl~~~~~~~~~~---~---~~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~np  150 (411)
T 3nnk_A           80 ILVSAIRPGDKVLVPVFGRFGHL---L---CEIARRCRA--EVHTIEVP-WGEVFTPDQVEDAVKRIRPRLLLTVQGDTS  150 (411)
T ss_dssp             HHHHHCCTTCEEEEEECSHHHHH---H---HHHHHHTTC--EEEEEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEETT
T ss_pred             HHHHhcCCCCEEEEecCCchHHH---H---HHHHHHcCC--eEEEEecC-CCCCCCHHHHHHHHhhCCCeEEEEeCCCCC
Confidence            99999999999999998664321   1   012233454  56666665 467899999999998668999999987777


Q ss_pred             C--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhh
Q 010008          255 R--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI  331 (520)
Q Consensus       255 ~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i  331 (520)
                      +  ..|+++|+++|+++|+++|+|++|..|....+...   .++|++++|+||++.||.| |++++++      ++.+++
T Consensus       151 tG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~---~~~d~~~~s~~K~l~~~~g~g~~~~~~------~~~~~~  221 (411)
T 3nnk_A          151 TTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDV---WGLDAVSAGMQKCLGGPSGTSPITLSA------RMEEAI  221 (411)
T ss_dssp             TTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTT---TTCSEEECCSTTTTCCCSSEEEEEECH------HHHHHH
T ss_pred             cceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhc---cCCcEEEecCccccCCCCceEEEEECH------HHHHHH
Confidence            6  78999999999999999999999876644222111   1589999999999877766 9999887      565554


Q ss_pred             cccC-----------------------------------CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q 010008          332 NNAV-----------------------------------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA  376 (520)
Q Consensus       332 ~~~~-----------------------------------~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~  376 (520)
                      ....                                   .....++++...++++..+++.....++++..+++.+++++
T Consensus       222 ~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~  301 (411)
T 3nnk_A          222 RRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDA  301 (411)
T ss_dssp             HTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             hhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            4321                                   01123567778888887788766544467888999999999


Q ss_pred             HHHHHHHCCCEEecCCC--CCeeEEEEecCCCCCHHHHHHHHhh-cCeEEcCCCCCCCCCCCCCCEEEEcc-CCccccCC
Q 010008          377 LASRLVELGYKLVSGGS--DNHLVLVDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGS-PAMTTRGF  452 (520)
Q Consensus       377 l~~~L~~~G~~v~~~gt--~~~~~~vd~~~~g~~~~~~~~~L~~-~gI~v~~~~~Pg~~~~~~~~giRig~-~~~tt~g~  452 (520)
                      +.+.|.+.|+++..+..  ..+++++.+. .+.+..++.+.|.+ +||.+..+..     +...+++||++ +..+    
T Consensus       302 l~~~L~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~gi~v~~g~~-----~~~~~~iRi~~~~~~~----  371 (411)
T 3nnk_A          302 LVKGIQAMGLETFGDLKHKMNNVLGVVIP-QGINGDQARKLMLEDFGIEIGTSFG-----PLHGKVWRIGTMGYNA----  371 (411)
T ss_dssp             HHHHHHHTTCCBCSCGGGBCSSEEEEECC-TTCCHHHHHHHHHHHHSEEEEECCG-----GGTTTEEEEECCGGGC----
T ss_pred             HHHHHHHcCCEeCCCcccccccEEEEECC-CCCCHHHHHHHHHHhcCeEEeCccC-----CCCCCEEEEeCccCcC----
Confidence            99999998888765321  2345555553 35677787777755 5999964321     22356899997 4333    


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q 010008          453 SEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       453 ~~~d~~~la~~i~~~l~~  470 (520)
                      +++|++++++.|+++++.
T Consensus       372 ~~~~i~~~~~~l~~~l~~  389 (411)
T 3nnk_A          372 RKDCVMTTLSALEAVLNY  389 (411)
T ss_dssp             SHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            489999999999998864

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.96  E-value=2.3e-27  Score=247.30  Aligned_cols=335  Identities=13%  Similarity=0.095  Sum_probs=236.9

Q ss_pred             cceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHH
Q 010008           95 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE  174 (520)
Q Consensus        95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~  174 (520)
                      .+.+.++...+++.|++++.......          +.  .....+....++++++++|++++..  .+.+.||++|+.+
T Consensus        12 ~~~~~p~p~~~~~~v~~a~~~~~~~~----------~~--~~~~~~~~~l~~~la~~~g~~~~~~--~~~~~s~t~al~~   77 (416)
T 3isl_A           12 RTIMTPGPVEVDPRVLRVMSTPVVGQ----------FD--PAFTGIMNETMEMLRELFQTKNRWA--YPIDGTSRAGIEA   77 (416)
T ss_dssp             CEECSSSSCCCCHHHHHHTTSCCCCT----------TS--HHHHHHHHHHHHHHHHHTTCCCSEE--EEEESCHHHHHHH
T ss_pred             ceeecCCCcCcCHHHHHHhcccCCCC----------cc--HHHHHHHHHHHHHHHHHhCCCCCcE--EEecCcHHHHHHH
Confidence            35566777778999999886532111          11  1123444456689999999987521  2245677799999


Q ss_pred             HHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC
Q 010008          175 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP  254 (520)
Q Consensus       175 ~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p  254 (520)
                      ++.++++|||+|+++++.|.++.   +   ...+...|.  +++.++++ .++.+|++++++++++.++++|++++++||
T Consensus        78 ~~~~l~~~gd~Vl~~~~~~~~~~---~---~~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~np  148 (416)
T 3isl_A           78 VLASVIEPEDDVLIPIYGRFGYL---L---TEIAERYGA--NVHMLECE-WGTVFDPEDIIREIKKVKPKIVAMVHGETS  148 (416)
T ss_dssp             HHHHHCCTTCEEEEEESSHHHHH---H---HHHHHHTTC--EEEEEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEETT
T ss_pred             HHHHhcCCCCEEEEecCCcccHH---H---HHHHHhcCC--eeEEEecC-CCCCCCHHHHHHHHhhCCCcEEEEEccCCC
Confidence            99999999999999998654311   1   012334454  66666676 457899999999998448999999988887


Q ss_pred             C--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhh
Q 010008          255 R--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI  331 (520)
Q Consensus       255 ~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i  331 (520)
                      +  ..|+++|.++|+++|+++++|++|..|....+...   .++|++++|+||++.||.| |++++++      ++.+++
T Consensus       149 tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~---~~~d~~~~s~~K~l~g~~g~g~~~~~~------~~~~~~  219 (416)
T 3isl_A          149 TGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDE---WKIDAAIGGTQKCLSVPSGMAPITYNE------RVADVI  219 (416)
T ss_dssp             TTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTT---TTCSEEECCSSSTTCCCSSEEEEEECH------HHHHHH
T ss_pred             CceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhh---cCCCEEEecCccccCCCCCeEEEEECH------HHHHHh
Confidence            6  78999999999999999999999887654322111   1589999999999877776 8998887      555544


Q ss_pred             ccc-------------------------------------CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010008          332 NNA-------------------------------------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNC  374 (520)
Q Consensus       332 ~~~-------------------------------------~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na  374 (520)
                      ...                                     ......++++...++++..+++.....++++..+++.+++
T Consensus       220 ~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~  299 (416)
T 3isl_A          220 AARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHE  299 (416)
T ss_dssp             HTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             hccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            321                                     1111245677778888877887665444788889999999


Q ss_pred             HHHHHHHHHCCCEEecCCC--CCeeEEEEecCCCCCHHHHHHHHhh-cCeEEcCCCCCCCCCCCCCCEEEEccCCccccC
Q 010008          375 RALASRLVELGYKLVSGGS--DNHLVLVDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRG  451 (520)
Q Consensus       375 ~~l~~~L~~~G~~v~~~gt--~~~~~~vd~~~~g~~~~~~~~~L~~-~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g  451 (520)
                      +++.+.|.+.|+++..+..  ..+++++.+. .+.+..++.+.|.+ +||.+..+.     .+..++++||+.+..++  
T Consensus       300 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~gi~v~~g~-----~~~~~~~iRi~~~~~~~--  371 (416)
T 3isl_A          300 AALAAGIKAMGLRLFGDDSCKMPVVTCVEIP-GGIDGESVRDMLLAQFGIEIASSF-----GPLAGKIWRIGTMGYSC--  371 (416)
T ss_dssp             HHHHHHHHHTTCCBCSCGGGBCTTEEEEECC-TTCCHHHHHHHHHHHHCEECBCCC-----STTTTTEEEEECCGGGC--
T ss_pred             HHHHHHHHHcCCEeccCccccCCcEEEEeCC-CCCCHHHHHHHHHHhCCEEEecCC-----CCCCCCEEEEecccCCC--
Confidence            9999999998888765421  1344555552 35677888887765 499996432     12346799999855443  


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q 010008          452 FSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       452 ~~~~d~~~la~~i~~~l~~  470 (520)
                       .+++++++++.|+++++.
T Consensus       372 -~~e~i~~~~~~l~~~~~~  389 (416)
T 3isl_A          372 -RKENVLFVLAGLEAVLLR  389 (416)
T ss_dssp             -SHHHHHHHHHHHHHHHHH
T ss_pred             -cHHHHHHHHHHHHHHHHH
Confidence             244499999999998864

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.96  E-value=3.9e-27  Score=242.84  Aligned_cols=326  Identities=13%  Similarity=0.131  Sum_probs=233.2

Q ss_pred             ecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC-CCCCceeee-cCChHHHHHHHH
Q 010008           99 IASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQ-PLSGSPANFEVY  176 (520)
Q Consensus        99 iasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~-~~~~~~~V~-~~sGs~A~~~~l  176 (520)
                      .++...+++.|++++...+.+.|          + .. ...+.+.+++++++++|++ ++    +|. +.+|++|+..++
T Consensus        25 ~~~~~~~~~~v~~a~~~~~~~~~----------~-~~-~~~~~~~~~~~la~~~g~~~~~----~v~~~~g~t~a~~~~~   88 (386)
T 2dr1_A           25 TAGPVACFPEVLEIMKVQMFSHR----------S-KE-YRKVHMDTVERLREFLEVEKGE----VLLVPSSGTGIMEASI   88 (386)
T ss_dssp             CSSSCCCCHHHHHHTTSCCCCTT----------S-HH-HHHHHHHHHHHHHHHHTCSSSE----EEEESSCHHHHHHHHH
T ss_pred             cCCCcCCcHHHHHHHhccccccc----------C-HH-HHHHHHHHHHHHHHHhCCCCCc----EEEEeCChHHHHHHHH
Confidence            34556789999999987654322          1 11 2445556678999999997 32    343 455569999999


Q ss_pred             HhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh-cCCcEEEEcCCCCCC
Q 010008          177 TAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-FRPKLIIAGASAYPR  255 (520)
Q Consensus       177 ~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~-~~pklIi~~~s~~p~  255 (520)
                      .++++|||+|+++++.|.++.   +.   ..+...|.  +++.++++ .++.+|+++|++++++ .++++|++++++||+
T Consensus        89 ~~l~~~gd~vl~~~~~~~~~~---~~---~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~npt  159 (386)
T 2dr1_A           89 RNGVSKGGKVLVTIIGAFGKR---YK---EVVESNGR--KAVVLEYE-PGKAVKPEDLDDALRKNPDVEAVTITYNETST  159 (386)
T ss_dssp             HHHSCTTCEEEEEESSHHHHH---HH---HHHHHTTC--EEEEEECC-TTCCCCHHHHHHHHHHCTTCCEEEEESEETTT
T ss_pred             HHhhcCCCeEEEEcCCchhHH---HH---HHHHHhCC--ceEEEecC-CCCCCCHHHHHHHHhcCCCCcEEEEEeecCCc
Confidence            999999999999998775420   10   12233454  66666676 3578999999999953 379999998877776


Q ss_pred             --CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHh
Q 010008          256 --DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA  330 (520)
Q Consensus       256 --~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~  330 (520)
                        ..|+++|.++|+++|+++|+|++|..|....     ++.  ++|++++|+||++.+|.| |++++++      ++.++
T Consensus       160 G~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~-----~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~------~~~~~  228 (386)
T 2dr1_A          160 GVLNPLPELAKVAKEHDKLVFVDAVSAMGGADI-----KFDKWGLDVVFSSSQKAFGVPPGLAIGAFSE------RFLEI  228 (386)
T ss_dssp             TEECCHHHHHHHHHHTTCEEEEECTTTBTTBCC-----CTTTTTCSEEEEETTSTTCCCSSCEEEEECH------HHHHH
T ss_pred             chhCCHHHHHHHHHHcCCeEEEEccccccCccc-----cccccCCcEEEEeccccccCCCceEEEEECH------HHHHH
Confidence              7899999999999999999999988664321     222  579999999999988754 9999987      55554


Q ss_pred             hcc---------------cC--CCCCCCCChHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHCCCEEecCC
Q 010008          331 INN---------------AV--FPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELGYKLVSGG  392 (520)
Q Consensus       331 i~~---------------~~--~p~~~g~p~~~~iaala~al~~~~~~-~~~~~~~~i~~na~~l~~~L~~~G~~v~~~g  392 (520)
                      +..               ..  .....++++...++++..+++..... ++++..+++.++++.+.+.|.+.|+++..+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~  308 (386)
T 2dr1_A          229 AEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEP  308 (386)
T ss_dssp             HTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCT
T ss_pred             HhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCc
Confidence            421               00  01223456666777777778765433 4678889999999999999998888876541


Q ss_pred             --CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          393 --SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       393 --t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                        ...+++++.+. .+.+..++.+.|.+.||.+..+..|     ..++++||++...+    +++|++++++.|+++++.
T Consensus       309 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~~~~~-----~~~~~iRi~~~~~~----~~~~i~~~~~~l~~~~~~  378 (386)
T 2dr1_A          309 GHESPTITAVLTP-PGIKGDEVYEAMRKRGFELAKGYGS-----VKEKTFRIGHMGYM----KFEDIQEMLDNLREVINE  378 (386)
T ss_dssp             TCBCSSEEEEECC-TTCCHHHHHHHHHHTTEECEECCGG-----GTTTEEEEECCSSC----CHHHHHHHHHHHHHHHHH
T ss_pred             cccCCceEEEEcC-CCCCHHHHHHHHHHCCeEEecCccc-----cCCCEEEEECCCCC----CHHHHHHHHHHHHHHHHH
Confidence              12456667664 3557778888888889998543211     23578999987533    489999999999998764

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.96  E-value=3.8e-27  Score=243.98  Aligned_cols=334  Identities=12%  Similarity=0.095  Sum_probs=236.1

Q ss_pred             cceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceee-ecCChHHHHH
Q 010008           95 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNV-QPLSGSPANF  173 (520)
Q Consensus        95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V-~~~sGs~A~~  173 (520)
                      .+.+.+++..+++.|++++...+.+.|            ....+......++++++++|+++++   +| ...+|++|+.
T Consensus        20 ~~~~~~g~~~~~~~v~~a~~~~~~~~~------------~~~~~~~~~~l~~~la~~~g~~~~~---~i~~~~g~t~a~~   84 (393)
T 2huf_A           20 KLLMGPGPSNAPQRVLDAMSRPILGHL------------HPETLKIMDDIKEGVRYLFQTNNIA---TFCLSASGHGGME   84 (393)
T ss_dssp             CEECSSSCCCCCHHHHHHTTSCCCCTT------------SHHHHHHHHHHHHHHHHHHTCCCSE---EEEESSCHHHHHH
T ss_pred             eEEecCCCCCCCHHHHHHHHhhhccCC------------CHHHHHHHHHHHHHHHHHhCCCCCc---EEEEcCcHHHHHH
Confidence            466666777789999999987654322            1122333445668999999997641   33 3455669999


Q ss_pred             HHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC
Q 010008          174 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  253 (520)
Q Consensus       174 ~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~  253 (520)
                      .++.++++|||+|+++++.|.++.   +   ...+...|.  +++.++++ +++.+|++++++++++.++++|++++++|
T Consensus        85 ~~~~~~~~~gd~vl~~~~~~~~~~---~---~~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~n  155 (393)
T 2huf_A           85 ATLCNLLEDGDVILIGHTGHWGDR---S---ADMATRYGA--DVRVVKSK-VGQSLSLDEIRDALLIHKPSVLFLTQGDS  155 (393)
T ss_dssp             HHHHHHCCTTCEEEEEESSHHHHH---H---HHHHHHTTC--EEEEEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred             HHHHHHhCCCCEEEEECCCcchHH---H---HHHHHHcCC--eeEEEeCC-CCCCCCHHHHHHHHhccCCcEEEEEccCC
Confidence            999999999999999998765421   1   001122354  56666666 35789999999999765799999998888


Q ss_pred             CC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHh
Q 010008          254 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA  330 (520)
Q Consensus       254 p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~  330 (520)
                      |+  ..|+++|.++|+++|+++|+|++|..|....+...   .++|++++|+||++.||.| |++++++      ++.++
T Consensus       156 ptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~---~~~d~~~~s~sK~l~g~~G~G~~~~~~------~~~~~  226 (393)
T 2huf_A          156 STGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDR---WEIDAMYTGSQKVLGAPPGITPVSFSH------RAVER  226 (393)
T ss_dssp             TTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTT---TTCSEEECCSSSTTCCCSSCEEEEECH------HHHHH
T ss_pred             CccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhh---cCccEEEECCCcccccCCCeEEEEECH------HHHHH
Confidence            76  77899999999999999999999876644222111   1579999999999887777 9999987      66665


Q ss_pred             hccc---CCC-------------------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEE
Q 010008          331 INNA---VFP-------------------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL  388 (520)
Q Consensus       331 i~~~---~~p-------------------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v  388 (520)
                      +...   ..+                   ...++++...++++..+++.....++++..+++.++++++.+.|.+.|+++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~  306 (393)
T 2huf_A          227 YKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFEL  306 (393)
T ss_dssp             HHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCB
T ss_pred             HhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCee
Confidence            5432   111                   123567788888777788765433467788899999999999998888877


Q ss_pred             ecCC--CCCeeEEEEecCCCCCHHHHHHHHh-hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHH
Q 010008          389 VSGG--SDNHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  465 (520)
Q Consensus       389 ~~~g--t~~~~~~vd~~~~g~~~~~~~~~L~-~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~  465 (520)
                      +.+.  ..++++++.+. .+.+..++.+.|. +.||.+..+..+     ..++++||++...+   .+++|++++++.|+
T Consensus       307 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~~gi~v~~g~~~-----~~~~~~Ri~~~~~~---~~~e~i~~~~~~l~  377 (393)
T 2huf_A          307 YADPKDRLSTVTTIKVP-QGVDWLKAAQYAMKTYLVEISGGLGP-----TAGQVFRIGLMGQN---ATTERVDRVLQVFQ  377 (393)
T ss_dssp             SSCGGGBCTTEEEEECC-TTCCHHHHHHHHHHHHCEECBCCCGG-----GTTTEEEEECCGGG---CSHHHHHHHHHHHH
T ss_pred             ccCccccCCcEEEEEcC-CCCCHHHHHHHHHHhCCEEEecCccc-----ccCCEEEEEcccCc---CCHHHHHHHHHHHH
Confidence            6542  12345566653 3567777777775 469998543211     23578999984332   24789999999999


Q ss_pred             HHHHH
Q 010008          466 EGVEI  470 (520)
Q Consensus       466 ~~l~~  470 (520)
                      ++++.
T Consensus       378 ~~~~~  382 (393)
T 2huf_A          378 EAVAA  382 (393)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.96  E-value=5.1e-27  Score=243.44  Aligned_cols=342  Identities=15%  Similarity=0.119  Sum_probs=238.3

Q ss_pred             cceEecCCC-CChHHHHHHHhhhhhccCCCCCCCCC-CCCcchhHHHHHHHHHHHHHHHcCC-CCCCCceeeecC-ChHH
Q 010008           95 SLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKR-YYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQPL-SGSP  170 (520)
Q Consensus        95 ~i~Liasen-~~~~~V~ea~~s~l~~~y~~G~p~~r-yy~g~~~~d~lE~~a~~~~~~lfg~-~~~~~~~~V~~~-sGs~  170 (520)
                      .+.|..+++ +.|+.|++++...+.+.+  +.|... +..+... .......++++++++|. +++    +|..+ +|++
T Consensus        24 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~~~la~~~~~~~~~----~v~~~~g~t~   96 (406)
T 1kmj_A           24 LAYLDSAASAQKPSQVIDAEAEFYRHGY--AAVHRGIHTLSAQA-TEKMENVRKRASLFINARSAE----ELVFVRGTTE   96 (406)
T ss_dssp             CEECCTTTCCCCCHHHHHHHHHHHHHTC--CCCSSCSSHHHHHH-HHHHHHHHHHHHHHTTCSCGG----GEEEESSHHH
T ss_pred             eEEecCCccCCCCHHHHHHHHHHHHhhc--CCCCCCcchHHHHH-HHHHHHHHHHHHHHcCCCCCC----eEEEeCChhH
Confidence            567765553 678999999998886543  222210 1111111 22223456889999999 444    33344 4559


Q ss_pred             HHHHHHHhh----CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEE
Q 010008          171 ANFEVYTAI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       171 A~~~~l~al----l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklI  246 (520)
                      |+.+++.++    ++|||+|+++++.|.+.+.. +.   ..+...|.  +++.++++ +++.+|+++|++++++ ++++|
T Consensus        97 a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~-~~---~~~~~~g~--~~~~~~~~-~~~~~d~~~l~~~l~~-~~~~v  168 (406)
T 1kmj_A           97 GINLVANSWGNSNVRAGDNIIISQMEHHANIVP-WQ---MLCARVGA--ELRVIPLN-PDGTLQLETLPTLFDE-KTRLL  168 (406)
T ss_dssp             HHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHH-HH---HHHHHHTC--EEEEECBC-TTSCBCGGGHHHHCCT-TEEEE
T ss_pred             HHHHHHHHhhhhcCCCCCEEEEecccchHHHHH-HH---HHHHhCCC--EEEEEecC-CCCCcCHHHHHHHhcc-CCeEE
Confidence            999999999    89999999999988665321 10   01223354  66667776 4578999999999987 89999


Q ss_pred             EEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCcccCCCCc-eEEEeeCCC
Q 010008          247 IAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDP  321 (520)
Q Consensus       247 i~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l~Gprg-G~I~~~~~~  321 (520)
                      +++.++||+  ..|+++|.++|+++|+++++|++|..|....     .+.  ++|++++|+||++ ||.| |++++++  
T Consensus       169 ~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~-----~~~~~~~d~~~~s~~K~~-g~~G~G~~~~~~--  240 (406)
T 1kmj_A          169 AITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPV-----DVQALDCDFYVFSGHKLY-GPTGIGILYVKE--  240 (406)
T ss_dssp             EEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCC-----CHHHHTCSEEEEEGGGTT-SCTTCEEEEECH--
T ss_pred             EEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCC-----cccccCCCEEEEEchhcc-CCCCcEEEEEeH--
Confidence            998887775  7899999999999999999999987664321     121  5799999999988 7776 9999987  


Q ss_pred             cchhhHHHhhcccCCC---------------------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 010008          322 VLGVELESAINNAVFP---------------------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASR  380 (520)
Q Consensus       322 ~~~~~l~~~i~~~~~p---------------------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~  380 (520)
                          ++.+++......                     ...|+++..+++++..+++.+...++++..+++.++++.+.+.
T Consensus       241 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~  316 (406)
T 1kmj_A          241 ----ALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQ  316 (406)
T ss_dssp             ----HHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence                676666543321                     1145677778888766777654345677788888999999999


Q ss_pred             HHHC-CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC--CCC-CCCEEEEccCCccccCCCHHH
Q 010008          381 LVEL-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK--SAL-VPGGIRIGSPAMTTRGFSEKE  456 (520)
Q Consensus       381 L~~~-G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~--~~~-~~~giRig~~~~tt~g~~~~d  456 (520)
                      |.+. |+++..+.....++++.+.  +.+..++.+.|.+.||.+..+......  ..+ .++++||+.+..+    +++|
T Consensus       317 L~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~----t~~~  390 (406)
T 1kmj_A          317 LESVPDLTLYGPQNRLGVIAFNLG--KHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYN----THEE  390 (406)
T ss_dssp             HTTSTTEEEESCTTCCSEEEEEET--TCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTC----CHHH
T ss_pred             HhcCCCeEEecCCCcCCEEEEEEC--CCCHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCC----CHHH
Confidence            9885 8887764213455666664  456778888999999998543210000  001 2578999987543    4899


Q ss_pred             HHHHHHHHHHHHH
Q 010008          457 FVAIADFIHEGVE  469 (520)
Q Consensus       457 ~~~la~~i~~~l~  469 (520)
                      ++++++.|+++++
T Consensus       391 i~~~~~~l~~~~~  403 (406)
T 1kmj_A          391 VDRLVTGLQRIHR  403 (406)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998875

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.96  E-value=2.3e-27  Score=244.05  Aligned_cols=332  Identities=13%  Similarity=0.095  Sum_probs=230.6

Q ss_pred             hccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHH
Q 010008           93 FKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN  172 (520)
Q Consensus        93 ~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~  172 (520)
                      ....++.+++..+|+.|++++...+...+         +  ..+ ..+.+.+++++++++|++.+.- +.+.+.+|++|+
T Consensus        18 ~~~~~~~pgp~~~~~~v~~a~~~~~~~~~---------~--~~~-~~~~~~~~~~la~~~g~~~~~~-~i~~~~ggt~al   84 (376)
T 3f0h_A           18 QGMLNFTVGPVMSSEEVRAIGAEQVPYFR---------T--TEF-SSTMLENEKFMLEYAKAPEGSK-AVFMTCSSTGSM   84 (376)
T ss_dssp             SSCEECSSSSCCCCHHHHHHHTSCCCCCS---------S--HHH-HHHHHHHHHHHHHHHTCCTTCE-EEEESSCHHHHH
T ss_pred             cCceeecCCCCCCcHHHHHHhcCCCCCCC---------C--HHH-HHHHHHHHHHHHHHhCCCCCce-EEEEcCChhHHH
Confidence            35688888888899999999987553211         1  112 2333455688999999975311 222345667999


Q ss_pred             HHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 010008          173 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA  252 (520)
Q Consensus       173 ~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~  252 (520)
                      .+++.++++|||+|+++++.+.++.   +.   ......|.  +++.++++ .++.+|++++++++++ ++++|++++++
T Consensus        85 ~~~~~~~~~~gd~vi~~~~~~~~~~---~~---~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~~~~-~~~~v~~~~~~  154 (376)
T 3f0h_A           85 EAVVMNCFTKKDKVLVIDGGSFGHR---FV---QLCEIHEI--PYVALKLE-HGKKLTKEKLYEYDNQ-NFTGLLVNVDE  154 (376)
T ss_dssp             HHHHHHHCCTTCCEEEEESSHHHHH---HH---HHHHHTTC--CEEEEECC-TTCCCCHHHHHTTTTS-CCCEEEEESEE
T ss_pred             HHHHHhccCCCCeEEEEeCChhhHH---HH---HHHHHcCC--ceEEEeCC-CCCCCCHHHHHHhhcc-CceEEEEeccc
Confidence            9999999999999999987543321   10   01223344  44555555 4578999999998876 89999998777


Q ss_pred             CCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCcccCCCCc-eEEEeeCCCcchhhH
Q 010008          253 YPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL  327 (520)
Q Consensus       253 ~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l  327 (520)
                      ||+  ..|+++|+++|+++|+++|+|++|..+....     .+.  ++|++++|+||++.|+.| |++++++      ++
T Consensus       155 nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~-----~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~------~~  223 (376)
T 3f0h_A          155 TSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPF-----NMNECGADVMITGSQKVLACPPGISVIVLAP------RG  223 (376)
T ss_dssp             TTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCC-----CHHHHTCSEEEEETTTTTCCCSSCEEEEECH------HH
T ss_pred             CCcceecCHHHHHHHHHHcCCEEEEEcCccccCccc-----cccccCccEEEecCcccccCCCceEEEEECH------HH
Confidence            776  7899999999999999999999987654321     122  479999999999986666 8888877      56


Q ss_pred             HHhhcccCCC----------------CCCCCChHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHCCCEEec
Q 010008          328 ESAINNAVFP----------------GLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELGYKLVS  390 (520)
Q Consensus       328 ~~~i~~~~~p----------------~~~g~p~~~~iaala~al~~~~~~-~~~~~~~~i~~na~~l~~~L~~~G~~v~~  390 (520)
                      .+++.....+                +...+++...++++..+++.+... ++++..++..++++++.+.|.+.|+++..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  303 (376)
T 3f0h_A          224 VERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVS  303 (376)
T ss_dssp             HHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECC
T ss_pred             HHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCc
Confidence            5555432111                123355566667777777766544 46778888889999999999888887765


Q ss_pred             CCCCCeeEEEEecCCCCCHHHHHHHHhhc-CeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          391 GGSDNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       391 ~gt~~~~~~vd~~~~g~~~~~~~~~L~~~-gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +.....++.+.  +.+.+..++.+.|.+. ||.+..+.     ++...+.+||+.+..+    +++|++++++.|+++++
T Consensus       304 ~~~~~~~~~~~--~~~~~~~~l~~~l~~~~gi~v~~g~-----~~~~~~~lRis~~~~~----t~e~i~~~~~~l~~~l~  372 (376)
T 3f0h_A          304 ESPANGVTSVH--PTTANAYDIFLKLKDEYGIWICPNG-----GEMKDTIFRVGHIGAL----THEDNTTLVNAFKDLQK  372 (376)
T ss_dssp             SSBBTTEEEEE--ESSSCHHHHHHHHHHHSSEECEECC-----GGGTTTCEEEECCSSC----CHHHHHHHHHHHHHHHH
T ss_pred             cccCceEEEEe--CCCCCHHHHHHHHHHhCCEEEecCc-----cccCCCEEEEecCCCC----CHHHHHHHHHHHHHHHH
Confidence            43223333332  3456778887777776 99985431     1223578999987543    48999999999998875

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.96  E-value=1.6e-27  Score=244.72  Aligned_cols=335  Identities=15%  Similarity=0.162  Sum_probs=233.1

Q ss_pred             CCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhh
Q 010008          101 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAI  179 (520)
Q Consensus       101 sen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~al  179 (520)
                      +..++++.|++++...+.+.+  ++|+..|..+. ....+.+.+++++++++|++++    +|..++|+ +|+.+++.++
T Consensus         8 ~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~----~i~~~~g~~~a~~~~~~~~   80 (382)
T 4hvk_A            8 SAKPVDERILEAMLPYMTESF--GNPSSVHSYGF-KAREAVQEAREKVAKLVNGGGG----TVVFTSGATEANNLAIIGY   80 (382)
T ss_dssp             TCCCCCHHHHHHHHHHHHTSC--CCTTCSSHHHH-HHHHHHHHHHHHHHHHTTCTTE----EEEEESSHHHHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHHHhhc--CCCcccchHHH-HHHHHHHHHHHHHHHHcCCCcC----eEEEECCchHHHHHHHHHh
Confidence            345789999999999887644  45554332222 2234444567899999999875    34445555 8999999998


Q ss_pred             C----CCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC
Q 010008          180 L----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR  255 (520)
Q Consensus       180 l----~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~  255 (520)
                      +    +|||+|+++++.|.+......     .+...|.  +++.++++ +++.+|+++|++++++ ++++|++++++||+
T Consensus        81 ~~~~~~~gd~vi~~~~~~~~~~~~~~-----~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~npt  151 (382)
T 4hvk_A           81 AMRNARKGKHILVSAVEHMSVINPAK-----FLQKQGF--EVEYIPVG-KYGEVDVSFIDQKLRD-DTILVSVQHANNEI  151 (382)
T ss_dssp             HHHHGGGCCEEEEETTCCHHHHHHHH-----HHHHTTC--EEEEECBC-TTSCBCHHHHHHHCCT-TEEEEECCSBCTTT
T ss_pred             hhhhcCCCCEEEECCCCcHHHHHHHH-----HHHhcCC--EEEEeccC-CCCCcCHHHHHHHhcc-CceEEEEECCCCCc
Confidence            7    999999999988765432110     1112344  66777776 4678999999999987 89999999888876


Q ss_pred             --CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhc
Q 010008          256 --DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAIN  332 (520)
Q Consensus       256 --~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~  332 (520)
                        ..|+++|.++|+++|+ +++|++|..|....+...   .++|++++|+||++ ||.| |+++++++      .  .+.
T Consensus       152 G~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~---~~~d~~~~s~~K~~-g~~g~g~~~~~~~------~--~~~  218 (382)
T 4hvk_A          152 GTIQPVEEISEVLAGKAA-LHIDATASVGQIEVDVEK---IGADMLTISSNDIY-GPKGVGALWIRKE------A--KLQ  218 (382)
T ss_dssp             CBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCCHHH---HTCSEEEEESGGGT-SCTTCEEEEEETT------C--CCC
T ss_pred             eeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCCchh---cCCCEEEEeHHHhc-CCCceEEEEEcCc------c--CcC
Confidence              7899999999999999 999999887654222111   15799999999975 6665 99998874      2  222


Q ss_pred             ccCCC------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCC--CeeEEEEec
Q 010008          333 NAVFP------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSD--NHLVLVDLR  403 (520)
Q Consensus       333 ~~~~p------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~--~~~~~vd~~  403 (520)
                      ...+.      ...++++...++++..+++... .++++..+++.++++.+.+.|.+. |+.+..+...  .+++.+.+ 
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~-  296 (382)
T 4hvk_A          219 PVILGGGQENGLRSGSENVPSIVGFGKAAEITA-MEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRF-  296 (382)
T ss_dssp             CSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEE-
T ss_pred             cccccCCCcCccccCCcCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEE-
Confidence            22111      1145567777777777777543 456788889999999999999874 7887654211  23444444 


Q ss_pred             CCCCCHHHHHHHHhhcCeEEcCCCCCCCCC--C------CC------CCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          404 PMGIDGARVEKILDMASITLNKNSVPGDKS--A------LV------PGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       404 ~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~--~------~~------~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                       .+.+..++.+.|.+.||.+..+..++...  +      +.      +++|||++...+    +++|++++++.|+++++
T Consensus       297 -~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~----t~e~i~~~~~~l~~~~~  371 (382)
T 4hvk_A          297 -SYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYN----TDEDVDRLLEVLPGVIE  371 (382)
T ss_dssp             -TTCCHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTC----CHHHHHHHHHHHHHHHH
T ss_pred             -CCCCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCC----CHHHHHHHHHHHHHHHH
Confidence             35678888899999999986542111100  0      00      578999987543    48999999999999887


Q ss_pred             HH
Q 010008          470 IT  471 (520)
Q Consensus       470 ~~  471 (520)
                      ..
T Consensus       372 ~~  373 (382)
T 4hvk_A          372 RL  373 (382)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.96  E-value=2.4e-27  Score=245.72  Aligned_cols=335  Identities=20%  Similarity=0.218  Sum_probs=236.9

Q ss_pred             ccceEecCCC---CChHHHHHHHhhhhhccCCCCCCCCCCCCc-chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH
Q 010008           94 KSLELIASEN---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS  169 (520)
Q Consensus        94 ~~i~Liasen---~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g-~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs  169 (520)
                      ..|++..+..   ..++.+.+++...+.+ |..++++.+|..| .+..++++    +++++++|.+.     +|.+++|+
T Consensus        44 ~~id~~~~~~~g~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l~----~~la~~~~~~~-----~i~~~sGt  113 (399)
T 3tqx_A           44 EVLNFCANNYLGLADHPALIKTAQTVVEQ-YGFGMASVRFICGTQTIHKELE----KDISEFLGTDD-----TILYSSCF  113 (399)
T ss_dssp             EEEECSSCCTTSCTTCHHHHHHHHHHHHH-HCSCCCSCCCCCCCBHHHHHHH----HHHHHHHTCSE-----EEEESCHH
T ss_pred             eEEEeeccCcccccCCHHHHHHHHHHHHH-hCCCCCCcCccccCchHHHHHH----HHHHHHHCCCc-----EEEECchH
Confidence            3466666532   2368999999888764 5455666666444 34344444    78888999863     56679999


Q ss_pred             HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc-----CCc
Q 010008          170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPK  244 (520)
Q Consensus       170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~-----~pk  244 (520)
                      +|+..++.++++|||+|++.++.|++...        .+...|.  +++.++.      +|++++++.+++.     +++
T Consensus       114 ~a~~~~l~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~--~~~~~~~------~d~~~l~~~l~~~~~~~~~~~  177 (399)
T 3tqx_A          114 DANGGLFETLLGPEDAIISDELNHASIID--------GIRLCKA--QRYRYKN------NAMGDLEAKLKEADEKGARFK  177 (399)
T ss_dssp             HHHHTTHHHHCCTTCEEEEETTCCHHHHH--------HHHSCCS--EEEEECT------TCTTHHHHHHHHHHTTTCSSE
T ss_pred             HHHHHHHHHhcCCCCEEEECCcccHHHHH--------HHHHcCC--ceeEeCC------CCHHHHHHHHHhhhccCCCce
Confidence            99999999999999999999998865431        2344554  5555543      5778898888764     789


Q ss_pred             EEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC----CC-CCcccEEEeccCcccCCCCceEEEe
Q 010008          245 LIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA----DP-FKYCDVVTTTTHKSLRGPRGGMIFF  317 (520)
Q Consensus       245 lIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~----~p-~~~aDiv~~S~hK~l~GprgG~I~~  317 (520)
                      +|+++.++||+  ..|+++|.++|+++|+++|+|++|..|........    .. ....|++++|+||++.|++||++++
T Consensus       178 ~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~gG~~~~  257 (399)
T 3tqx_A          178 LIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASGGYTSG  257 (399)
T ss_dssp             EEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCCEEEEE
T ss_pred             EEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCceEEEEc
Confidence            99999888876  77899999999999999999999876653221000    00 1246899999999998899999999


Q ss_pred             eCCCcchhhHHHhhcccCCCC-CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCe
Q 010008          318 KKDPVLGVELESAINNAVFPG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH  396 (520)
Q Consensus       318 ~~~~~~~~~l~~~i~~~~~p~-~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~  396 (520)
                      ++      ++.+.+.....+. ..++++...+++...+++... .+.++..+++.++++++.+.|.+.|+++..+  ..+
T Consensus       258 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~  328 (399)
T 3tqx_A          258 HK------EIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKLGFQLVPG--NHP  328 (399)
T ss_dssp             CH------HHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHTCCBCCC--SSS
T ss_pred             CH------HHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHcCCCcCCC--CCC
Confidence            88      6666654421111 134455666666666676553 3457888999999999999999888887643  345


Q ss_pred             eEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          397 LVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       397 ~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      ++++.+.. +.+..++.+.|.+.||.+.....|+.  +...+++||+.+..    .+++|++++++.|.++++.
T Consensus       329 ~~~~~~~~-~~~~~~~~~~l~~~gi~v~~~~~~~~--~~~~~~iRi~~~~~----~~~~~i~~~~~~l~~~~~~  395 (399)
T 3tqx_A          329 IIPVMLGD-AQLATNMADHLLQEGIYVVGFSYPVV--PMGKARIRVQMSAV----HTQQQLDRAIEAFGQVGKK  395 (399)
T ss_dssp             EEEEEEEC-HHHHHHHHHHHHHTTEECCEECTTTS--CTTCEEEEEECCTT----CCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCC-HHHHHHHHHHHHHCCCEEeeeCCCCC--CCCCceEEEEeecC----CCHHHHHHHHHHHHHHHHH
Confidence            66776642 22456677888889999864322211  22356899997643    3589999999999998764

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.96  E-value=5.1e-27  Score=244.74  Aligned_cols=345  Identities=17%  Similarity=0.147  Sum_probs=238.1

Q ss_pred             cceEecCCC-CChHHHHHHHhhhhhccCCCCCCC--CCCCCcchhHHHHHHHHHHHHHHHcCC-CCCCCceeeecCChHH
Q 010008           95 SLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPG--KRYYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQPLSGSP  170 (520)
Q Consensus        95 ~i~Liasen-~~~~~V~ea~~s~l~~~y~~G~p~--~ryy~g~~~~d~lE~~a~~~~~~lfg~-~~~~~~~~V~~~sGs~  170 (520)
                      .|.|..+++ +.|+.|++++...+.+.+  +.|.  ...|+ ....+.++ ..++.+++++|. ++++   .+...+|++
T Consensus        29 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~y~-~~~~~~~~-~l~~~la~~~~~~~~~~---v~~~~g~t~  101 (420)
T 1t3i_A           29 LVYLDNAATSQKPRAVLEKLMHYYENDN--ANVHRGAHQLS-VRATDAYE-AVRNKVAKFINARSPRE---IVYTRNATE  101 (420)
T ss_dssp             CEECBTTTCCCCCHHHHHHHHHHHHHTC--CCC--CCSHHH-HHHHHHHH-HHHHHHHHHTTCSCGGG---EEEESSHHH
T ss_pred             eEEecCCccCCCCHHHHHHHHHHHHhcc--CCCCcccchHH-HHHHHHHH-HHHHHHHHHcCCCCCCe---EEEcCChHH
Confidence            577776554 578999999998886533  1222  11121 11112222 355789999999 5542   233445569


Q ss_pred             HHHHHHHhh----CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEE
Q 010008          171 ANFEVYTAI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       171 A~~~~l~al----l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklI  246 (520)
                      |+.+++.++    ++|||+|+++++.|.++... +.   ..+...|.  +++.++++ +++.+|++++++++++ ++++|
T Consensus       102 a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~-~~---~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~-~~~~v  173 (420)
T 1t3i_A          102 AINLVAYSWGMNNLKAGDEIITTVMEHHSNLVP-WQ---MVAAKTGA--VLKFVQLD-EQESFDLEHFKTLLSE-KTKLV  173 (420)
T ss_dssp             HHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHH-HH---HHHHHHCC--EEEEECBC-TTSSBCHHHHHHHCCT-TEEEE
T ss_pred             HHHHHHHHhhhcccCCCCEEEECcchhHHHHHH-HH---HHHHhcCc--EEEEeccC-CCCCcCHHHHHHhhCC-CceEE
Confidence            999999999    99999999999988764210 10   01122344  66677776 4678999999999987 89999


Q ss_pred             EEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcc
Q 010008          247 IAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVL  323 (520)
Q Consensus       247 i~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~  323 (520)
                      ++++++||+  ..|+++|.++|+++|+++|+|++|..|....+....   ++|++++|+||.+ ||.| |++++++    
T Consensus       174 ~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~---~~di~~~s~sK~~-~~~g~G~~~~~~----  245 (420)
T 1t3i_A          174 TVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLI---DCDWLVASGHKMC-APTGIGFLYGKE----  245 (420)
T ss_dssp             EEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---TCSEEEEEGGGTT-SCTTCEEEEECH----
T ss_pred             EEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchhhc---CCCEEEEehhhhc-CCCceEEEEEch----
Confidence            999888775  789999999999999999999998866432111000   4799999999965 5554 9999987    


Q ss_pred             hhhHHHhhcccCCCC--------------------CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Q 010008          324 GVELESAINNAVFPG--------------------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE  383 (520)
Q Consensus       324 ~~~l~~~i~~~~~p~--------------------~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~  383 (520)
                        ++.+++......+                    ..|+++..+++++..+++.+...++++..+++.++++.+.+.|.+
T Consensus       246 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~  323 (420)
T 1t3i_A          246 --EILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQ  323 (420)
T ss_dssp             --HHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             --HHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence              6777665433221                    135677777777776777654335677888899999999999988


Q ss_pred             C-CCEEecCCC----CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC--CCCC-CCEEEEccCCccccCCCHH
Q 010008          384 L-GYKLVSGGS----DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK--SALV-PGGIRIGSPAMTTRGFSEK  455 (520)
Q Consensus       384 ~-G~~v~~~gt----~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~--~~~~-~~giRig~~~~tt~g~~~~  455 (520)
                      . |++++.+..    ...++++.+.  +.+..++.+.|.+.||.+..+..+...  ..++ ++++||+....+    +++
T Consensus       324 ~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~----~~~  397 (420)
T 1t3i_A          324 IPQLRLYGPNPKHGDRAALASFNVA--GLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYN----TKE  397 (420)
T ss_dssp             CTTEEEESCCGGGSCBCSEEEEEET--TBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTC----CHH
T ss_pred             CCCeEEeCCCccccccCCEEEEEEC--CCCHHHHHHHHHHCCeEEeeccccchHHHHhcCCCCeEEEecCCCC----CHH
Confidence            5 888876531    2455666664  356778889999999998543211000  0112 578999977543    589


Q ss_pred             HHHHHHHHHHHHHHH
Q 010008          456 EFVAIADFIHEGVEI  470 (520)
Q Consensus       456 d~~~la~~i~~~l~~  470 (520)
                      |++++++.|+++++.
T Consensus       398 ~i~~~~~~l~~~~~~  412 (420)
T 1t3i_A          398 EIDLFLQSLQATIRF  412 (420)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988764

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.96  E-value=5.3e-27  Score=242.21  Aligned_cols=335  Identities=13%  Similarity=0.078  Sum_probs=233.5

Q ss_pred             cceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHH
Q 010008           95 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE  174 (520)
Q Consensus        95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~  174 (520)
                      .+.+.++...+++.|++++...+.+.+         +  .. ...+....++++++++|.+.++.  .+.+.+|++|+..
T Consensus        24 ~~~~~p~p~~~~~~v~~a~~~~~~~~~---------~--~~-~~~~~~~l~~~la~~~~~~~~~~--v~~~~gg~~al~~   89 (393)
T 3kgw_A           24 RLLLGPGPSNLAPRVLAAGSLRMIGHM---------Q--KE-MLQIMEEIKQGIQYVFQTRNPLT--LVVSGSGHCAMET   89 (393)
T ss_dssp             CEECSSSCCCCCHHHHHHTTCCCCCTT---------S--HH-HHHHHHHHHHHHHHHHTCCCSEE--EEESCCTTTHHHH
T ss_pred             ceeccCCCCCCCHHHHHHhcccccCcc---------c--HH-HHHHHHHHHHHHHHHhCCCCCcE--EEEeCCcHHHHHH
Confidence            355677777889999999976432211         1  11 22333345688999999975421  1334566699999


Q ss_pred             HHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC
Q 010008          175 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP  254 (520)
Q Consensus       175 ~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p  254 (520)
                      ++.++++|||+|+++++.+.++   .+   ...+...|.  +++.++++ +++.+|++++++++++.++++|+++.++||
T Consensus        90 ~~~~~~~~gd~vl~~~~~~~~~---~~---~~~~~~~g~--~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~np  160 (393)
T 3kgw_A           90 ALFNLLEPGDSFLTGTNGIWGM---RA---AEIADRIGA--RVHQMIKK-PGEHYTLQEVEEGLAQHKPVLLFLVHGESS  160 (393)
T ss_dssp             HHHHHCCTTCEEEEEESSHHHH---HH---HHHHHHTTC--EEEEEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEETT
T ss_pred             HHHhcCCCCCEEEEEeCCchhH---HH---HHHHHHcCC--ceEEEeCC-CCCCCCHHHHHHHHhhCCCcEEEEeccCCc
Confidence            9999999999999987543211   00   012233454  56666665 356899999999998778999999988887


Q ss_pred             C--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhh
Q 010008          255 R--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI  331 (520)
Q Consensus       255 ~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i  331 (520)
                      +  ..|+++|.++|+++|++||+|++|..|....+...   .++|++++|+||++.|+.| |++++++      ++.+.+
T Consensus       161 tG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~---~~~d~~~~s~sK~~~~~~g~g~~~~~~------~~~~~~  231 (393)
T 3kgw_A          161 TGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQ---QGIDIMYSSSQKVLNAPPGISLISFND------KAKYKV  231 (393)
T ss_dssp             TTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTT---TTCCEEEEESSSTTCCCSSCEEEEECH------HHHHHH
T ss_pred             chhhccHHHHHHHHHHcCCEEEEECCccccCcccchhh---cCCCEEEecCcccccCCCceeEEEECH------HHHHHH
Confidence            6  77899999999999999999999876643222111   1579999999999977665 9999987      565555


Q ss_pred             cccCCC----------------------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEe
Q 010008          332 NNAVFP----------------------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLV  389 (520)
Q Consensus       332 ~~~~~p----------------------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~  389 (520)
                      .....+                      ...++++...++++..+++.....++++..+++.++++.+.+.|.+.|+++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~  311 (393)
T 3kgw_A          232 YSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLKFF  311 (393)
T ss_dssp             HTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBS
T ss_pred             hccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeec
Confidence            332111                      1235667777877777777665445688889999999999999998888876


Q ss_pred             cCC--C-CCeeEEEEecCCCCCHHHHHHHHhhc-CeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHH
Q 010008          390 SGG--S-DNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  465 (520)
Q Consensus       390 ~~g--t-~~~~~~vd~~~~g~~~~~~~~~L~~~-gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~  465 (520)
                      .+.  . ...+.++.+. .+.+..++.+.|.+. ||.+..+..     +...+++||+....+   .+++|++++++.|+
T Consensus       312 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~-----~~~~~~iRi~~~~~~---~~~~~i~~~~~~l~  382 (393)
T 3kgw_A          312 VKDPEIRLPTITTVTVP-AGYNWRDIVSYVLDHFSIEISGGLG-----PTEERVLRIGLLGYN---ATTENVDRVAEALR  382 (393)
T ss_dssp             SSSGGGBCSSEEEEECC-TTBCHHHHHHHHHHHHCEECBCCCG-----GGTTTEEEEECCGGG---CCHHHHHHHHHHHH
T ss_pred             cCChhhcCCeEEEEeCC-CCCCHHHHHHHHHHhCCEEEeCCcc-----cCCCCEEEEEecccC---CCHHHHHHHHHHHH
Confidence            321  1 1234445543 356777777777665 999964321     224578999963322   24899999999999


Q ss_pred             HHHHH
Q 010008          466 EGVEI  470 (520)
Q Consensus       466 ~~l~~  470 (520)
                      ++++.
T Consensus       383 ~~l~~  387 (393)
T 3kgw_A          383 EALQH  387 (393)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98864

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.96  E-value=3.2e-27  Score=240.05  Aligned_cols=326  Identities=14%  Similarity=0.090  Sum_probs=231.5

Q ss_pred             ceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCceeeecCC-hHHHH
Q 010008           96 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLS-GSPAN  172 (520)
Q Consensus        96 i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~s-Gs~A~  172 (520)
                      +.+++++.++|+.|++++...+.+.        +|+   . ........++++++++|++  ++    +|..++ |++|+
T Consensus         2 ~~~~~gp~~~~~~v~~a~~~~~~~~--------~~~---~-~~~~~~~l~~~la~~~g~~~~~~----~v~~t~g~t~a~   65 (353)
T 2yrr_A            2 LLLTPGPTPIPERVQKALLRPMRGH--------LDP---E-VLRVNRAIQERLAALFDPGEGAL----VAALAGSGSLGM   65 (353)
T ss_dssp             EECSSSSCCCCHHHHGGGGSCCCCT--------TCH---H-HHHHHHHHHHHHHHHHCCCTTCE----EEEESSCHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHhcccccc--------cCH---H-HHHHHHHHHHHHHHHhCCCCCCc----eEEEcCCcHHHH
Confidence            4677888889999999998766431        111   1 1233345668999999996  33    344455 45999


Q ss_pred             HHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 010008          173 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA  252 (520)
Q Consensus       173 ~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~  252 (520)
                      ..++.++++  |+|++++++|.++ .  +   ...+...|.  +++.++++ +++.+|++++++.+++.++++|++++++
T Consensus        66 ~~~~~~~~~--d~vl~~~~~~~~~-~--~---~~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~v~~~~~~  134 (353)
T 2yrr_A           66 EAGLANLDR--GPVLVLVNGAFSQ-R--V---AEMAALHGL--DPEVLDFP-PGEPVDPEAVARALKRRRYRMVALVHGE  134 (353)
T ss_dssp             HHHHHTCSC--CCEEEEECSHHHH-H--H---HHHHHHTTC--CEEEEECC-TTSCCCHHHHHHHHHHSCCSEEEEESEE
T ss_pred             HHHHHHhcC--CcEEEEcCCCchH-H--H---HHHHHHcCC--ceEEEeCC-CCCCCCHHHHHHHHHhCCCCEEEEEccC
Confidence            999999887  8999988766443 1  1   011233454  55666666 3578999999999976579999999888


Q ss_pred             CCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCcccCCCCc-eEEEeeCCCcchhhH
Q 010008          253 YPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL  327 (520)
Q Consensus       253 ~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l  327 (520)
                      ||+  ..|+++|.++|+++|+++++|++|..|..     +.++.  ++|++++|+||++.||.| |++++++      ++
T Consensus       135 nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~------~~  203 (353)
T 2yrr_A          135 TSTGVLNPAEAIGALAKEAGALFFLDAVTTLGML-----PFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASL------EA  203 (353)
T ss_dssp             TTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTS-----CCCHHHHTCSEEECCTTSTTCCCSSCEEEEECH------HH
T ss_pred             CCcceecCHHHHHHHHHHcCCeEEEEcCcccccc-----cccccccCceEEEecCcccccCCCceEEEEECH------HH
Confidence            876  78999999999999999999999865532     12222  479999999999887766 9999988      56


Q ss_pred             HHhhcc--cC------------CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCC-
Q 010008          328 ESAINN--AV------------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG-  392 (520)
Q Consensus       328 ~~~i~~--~~------------~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~g-  392 (520)
                      .+++..  ..            .....++++...++++..+++.....++++..+++.++++++.+.|++.|+++..+. 
T Consensus       204 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  283 (353)
T 2yrr_A          204 RKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARGFRPYPKAS  283 (353)
T ss_dssp             HHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEESCSSS
T ss_pred             HHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCccccCcc
Confidence            555531  00            011235667777777777777654444678889999999999999988888877532 


Q ss_pred             CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHH-HHHHHHHHHHH
Q 010008          393 SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFV-AIADFIHEGVE  469 (520)
Q Consensus       393 t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~-~la~~i~~~l~  469 (520)
                      ..++++++.+. .+.+..++.+.|.+.||.+..+..+     ..++++|++.+...    +++|++ ++++.|+++++
T Consensus       284 ~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~g~~~-----~~~~~iRi~~~~~~----~~~~~~~~~~~~l~~~l~  351 (353)
T 2yrr_A          284 PLPTVLVVRPP-EGVDADRLVRALYAEGVAVAGGIGP-----TRGQVLRLGLMGEG----ARREAYQAFLKALDRALA  351 (353)
T ss_dssp             BCTTEEEEECC-TTCCHHHHHHHHHHTTEECEECCGG-----GTTTCEEEECSGGG----SCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECC-CCCCHHHHHHHHHHCCEEEeCCccc-----cCCCeEEEecCccC----CHHHHHHHHHHHHHHHHh
Confidence            13455566663 3567788888888889998543211     23568999985443    368898 99999988765

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.95  E-value=6.6e-27  Score=243.38  Aligned_cols=340  Identities=14%  Similarity=0.073  Sum_probs=234.9

Q ss_pred             cceEecCCC-CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh-HHHH
Q 010008           95 SLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPAN  172 (520)
Q Consensus        95 ~i~Liasen-~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG-s~A~  172 (520)
                      .+.|..+++ ++++.|++++...+.+.+  +.|...|..+... +.....+++++++++|++++    +|.+++| ++++
T Consensus        27 ~~~ld~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~l~~~la~~~g~~~~----~v~~~~g~t~al   99 (406)
T 3cai_A           27 WVHFDAPAGMLIPDSVATTVSTAFRRSG--ASTVGAHPSARRS-AAVLDAAREAVADLVNADPG----GVVLGADRAVLL   99 (406)
T ss_dssp             CEECBGGGCCCCCHHHHHHHHHHHHHCC--SSSCSSSHHHHHH-HHHHHHHHHHHHHHHTCCGG----GEEEESCHHHHH
T ss_pred             eEEEeCCCcCCCCHHHHHHHHHHHHhcC--CCCCCccHHHHHH-HHHHHHHHHHHHHHhCCCCC----eEEEeCChHHHH
Confidence            466665543 688999999998886543  2333333222111 22333466889999999765    3444555 4888


Q ss_pred             HHHHHhh---CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 010008          173 FEVYTAI---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  249 (520)
Q Consensus       173 ~~~l~al---l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~  249 (520)
                      .+++.++   ++|||+|++++++|.++......    .....|.  +++.++++++++.+|+++|++.+++ ++++|+++
T Consensus       100 ~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~----~~~~~g~--~v~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~  172 (406)
T 3cai_A          100 SLLAEASSSRAGLGYEVIVSRLDDEANIAPWLR----AAHRYGA--KVKWAEVDIETGELPTWQWESLISK-STRLVAVN  172 (406)
T ss_dssp             HHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHH----HHHHHBC--EEEEECCCTTTCCCCGGGHHHHCCT-TEEEEEEE
T ss_pred             HHHHHHHhhccCCCCEEEEcCCccHHHHHHHHH----HHHhcCC--eEEEEecCcccCCcCHHHHHHHhCC-CceEEEEe
Confidence            8888887   79999999999888765321110    0011343  6777777756788999999999987 89999999


Q ss_pred             CCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCce-EEEeeCCCcchhh
Q 010008          250 ASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG-MIFFKKDPVLGVE  326 (520)
Q Consensus       250 ~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~GprgG-~I~~~~~~~~~~~  326 (520)
                      .++||+  ..|+++|.++|+++|++|++|++|..|....+...   -++|++++|+||++ ||++| ++++++      +
T Consensus       173 ~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~---~~~d~~~~s~~K~~-g~~~G~~~~~~~------~  242 (406)
T 3cai_A          173 SASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRE---TDADVVTVNAHAWG-GPPIGAMVFRDP------S  242 (406)
T ss_dssp             SBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCCHHH---HCCSEEEEEGGGGT-SCSCEEEEESCH------H
T ss_pred             CCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCCchh---cCCCEEEeehhhhc-CCCcCeEEEEeh------H
Confidence            888875  78999999999999999999999886643221110   05799999999976 57788 999987      6


Q ss_pred             HHHhhcccCC--C------CCCCCChHHHHHHHHHHHHHhcCc--------------hhHHHHHHHHHHHHHHHHHHHHC
Q 010008          327 LESAINNAVF--P------GLQGGPHNHTIGGLAVCLKHAQSP--------------EFKVYQNKVVSNCRALASRLVEL  384 (520)
Q Consensus       327 l~~~i~~~~~--p------~~~g~p~~~~iaala~al~~~~~~--------------~~~~~~~~i~~na~~l~~~L~~~  384 (520)
                      +.+++.....  .      ...|+++...++++..+++.....              .+++..+++.++++++.+.|.+.
T Consensus       243 ~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  322 (406)
T 3cai_A          243 VMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSL  322 (406)
T ss_dssp             HHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence            7666654321  0      114667777777777777765542              25777888889999999999884


Q ss_pred             -CCEEecCC-CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCC------CCCCCCCCCCEEEEccCCccccCCCHHH
Q 010008          385 -GYKLVSGG-SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSV------PGDKSALVPGGIRIGSPAMTTRGFSEKE  456 (520)
Q Consensus       385 -G~~v~~~g-t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~------Pg~~~~~~~~giRig~~~~tt~g~~~~d  456 (520)
                       |+++..+. ....++++.+.  +.+..++.+.|.+.||.+..+..      .|.  +...+.+||++...+    +++|
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~--~~~~~~iRis~~~~~----t~e~  394 (406)
T 3cai_A          323 PLVMLIGRPEAQIPVVSFAVH--KVPADRVVQRLADNGILAIANTGSRVLDVLGV--NDVGGAVTVGLAHYS----TMAE  394 (406)
T ss_dssp             TTEEECCCCSSBCSEEEEEET--TBCHHHHHHHHHHTTEECEECCSCHHHHHHTT--TTTTCCEEEECCTTC----CHHH
T ss_pred             CCeEEcCCccccCCEEEEEEC--CcCHHHHHHHHHHCCcEEecCChHHHHHHcCC--CCCCCeEEEEeecCC----CHHH
Confidence             78776542 12234555553  45678888888899999864320      010  012468999987544    4899


Q ss_pred             HHHHHHHHHH
Q 010008          457 FVAIADFIHE  466 (520)
Q Consensus       457 ~~~la~~i~~  466 (520)
                      ++++++.|++
T Consensus       395 i~~~~~~l~~  404 (406)
T 3cai_A          395 VDQLVRALAS  404 (406)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9999988864

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.95  E-value=2.6e-26  Score=234.43  Aligned_cols=318  Identities=12%  Similarity=0.064  Sum_probs=231.2

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      +.|+|..++|+  +++.|++++...+.+.  .+||.       ....+    .++++++++|++++    +|.+++|+ +
T Consensus        17 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~-------~~~~~----l~~~la~~~~~~~~----~i~~~~g~~~   79 (354)
T 3ly1_A           17 NPIRINFNENPLGMSPKAQAAARDAVVKA--NRYAK-------NEILM----LGNKLAAHHQVEAP----SILLTAGSSE   79 (354)
T ss_dssp             SCEECSSCCCSSCCCHHHHHHHHHTGGGT--TSCCH-------HHHHH----HHHHHHHHTTSCGG----GEEEESHHHH
T ss_pred             ceEEccCCCCCCCCCHHHHHHHHHHHhhC--cCCCC-------CchHH----HHHHHHHHhCCChH----HEEEeCChHH
Confidence            56888888875  6899999999887642  23332       22333    34788899998875    44556666 9


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh-cCCcEEEEc
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-FRPKLIIAG  249 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~-~~pklIi~~  249 (520)
                      |+.+++.++++|||+|++.+|.|.++..        .+...|.  +++.+++++ ++.+|+++++++++. .++++|+++
T Consensus        80 a~~~~~~~l~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~-~~~~d~~~l~~~l~~~~~~~~v~l~  148 (354)
T 3ly1_A           80 GIRAAIEAYASLEAQLVIPELTYGDGEH--------FAKIAGM--KVTKVKMLD-NWAFDIEGLKAAVAAYSGPSIVYLV  148 (354)
T ss_dssp             HHHHHHHHHCCTTCEEEEESSSCTHHHH--------HHHHTTC--EEEEECCCT-TSCCCHHHHHHHHHTCSSCEEEEEE
T ss_pred             HHHHHHHHHhCCCCeEEECCCCchHHHH--------HHHHcCC--EEEEecCCC-CCCCCHHHHHHHhccCCCCCEEEEe
Confidence            9999999999999999999988765421        2334454  667777763 588999999999983 389999999


Q ss_pred             CCCCCC--CCCHHHHHHHHHH--hCCEEEEechhhcccccccccCCCCC------cccEEEeccCccc--CCCCceEEEe
Q 010008          250 ASAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK------YCDVVTTTTHKSL--RGPRGGMIFF  317 (520)
Q Consensus       250 ~s~~p~--~~d~~~i~~ia~~--~g~~li~D~Ah~~gli~~~~~~~p~~------~aDiv~~S~hK~l--~GprgG~I~~  317 (520)
                      .++||+  ..+.+++.++++.  +|+++++|++|. ++...+.....+.      ..+++++|+||++  +|.|.|++++
T Consensus       149 ~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~  227 (354)
T 3ly1_A          149 NPNNPTGTITPADVIEPWIASKPANTMFIVDEAYA-EFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVA  227 (354)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTG-GGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEEC
T ss_pred             CCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHH-HhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeec
Confidence            888886  7788888888887  999999999976 4443332222221      2348899999997  5778899999


Q ss_pred             eCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCee
Q 010008          318 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL  397 (520)
Q Consensus       318 ~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~  397 (520)
                      ++      ++.+.+.....+   .+++....+++..+++..  ..+++..+++.++++.+.+.|.+.|+.+..+  ...+
T Consensus       228 ~~------~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~~  294 (354)
T 3ly1_A          228 HP------TVIALMGRYVAG---EKINFSGVDAALASMNDS--AFITYSKKSNDVSRQILLKALEDLKLPYLPS--EGNF  294 (354)
T ss_dssp             CH------HHHHHHGGGTTC---SCCCHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC--CSSE
T ss_pred             CH------HHHHHHHHhcCC---CCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHCCCeECCC--CceE
Confidence            77      777777665443   244555555554455422  3357778888999999999998888877643  2345


Q ss_pred             EEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          398 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       398 ~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +++++..   +..++.+.|.++||.+. +..++     .++++||++.       +++|++++++.|+++++
T Consensus       295 ~~~~~~~---~~~~~~~~l~~~gi~v~-g~~~~-----~~~~iRis~~-------~~~~i~~~~~~l~~~l~  350 (354)
T 3ly1_A          295 VFHQLVV---PLKDYQTHMADAGVLIG-RAFPP-----ADNWCRISLG-------TPQEMQWVADTMREFRK  350 (354)
T ss_dssp             EEEECSS---CHHHHHHHHHHTTEECC-CCCTT-----CTTEEEEECC-------CHHHHHHHHHHHHHHHH
T ss_pred             EEEECCC---CHHHHHHHHHHCCEEEe-ecCCC-----CCCEEEEEcC-------CHHHHHHHHHHHHHHHH
Confidence            6777753   67788888889999986 43222     3679999953       47999999999998876

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.95  E-value=5.1e-26  Score=234.71  Aligned_cols=328  Identities=16%  Similarity=0.052  Sum_probs=227.6

Q ss_pred             EecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHH
Q 010008           98 LIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT  177 (520)
Q Consensus        98 Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~  177 (520)
                      +.....++++.|.+++...+.+.+.  .+. . |   ....+++..+++++++++|++++++   +.+.+|++|+..++.
T Consensus        35 ~~~~~~~~~~~v~~a~~~~~~~~~~--~~~-~-~---~~~~~~~~~l~~~la~~~~~~~~~i---~~~~ggt~a~~~~~~  104 (397)
T 3f9t_A           35 FGSMCSNVLPITRKIVDIFLETNLG--DPG-L-F---KGTKLLEEKAVALLGSLLNNKDAYG---HIVSGGTEANLMALR  104 (397)
T ss_dssp             CSCSCCCCCTHHHHHHHHHTTCCTT--SGG-G-B---HHHHHHHHHHHHHHHHHTTCTTCEE---EEESCHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHHhhcCC--Ccc-c-C---hhHHHHHHHHHHHHHHHhCCCCCCE---EEecCcHHHHHHHHH
Confidence            3344456788999999888765431  221 1 1   2345666677799999999987521   334556699999999


Q ss_pred             hhCCC-------------CCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCc
Q 010008          178 AILKP-------------HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK  244 (520)
Q Consensus       178 all~p-------------GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pk  244 (520)
                      ++.++             ||+|++.++.|.+...        .+...|.  +++.++++ +++.+|++++++++++.+++
T Consensus       105 ~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~  173 (397)
T 3f9t_A          105 CIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEK--------GREMMDL--EYIYAPIK-EDYTIDEKFVKDAVEDYDVD  173 (397)
T ss_dssp             HHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHH--------HHHHHTC--EEEEECBC-TTSSBCHHHHHHHHHHSCCC
T ss_pred             HHHHHHHhhhhhcccCCCCeEEEECCcchhHHHH--------HHHHcCc--eeEEEeeC-CCCcCCHHHHHHHHhhcCCe
Confidence            98766             9999999998765421        2334455  66777776 46889999999999876789


Q ss_pred             EEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhccccccccc-------CCCCC---cccEEEeccCcccCC-CC
Q 010008          245 LIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV-------ADPFK---YCDVVTTTTHKSLRG-PR  311 (520)
Q Consensus       245 lIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-------~~p~~---~aDiv~~S~hK~l~G-pr  311 (520)
                      +|+++.++||+  ..|+++|.++|+++|++||+|++|..+.......       ..++.   ++|++++|+||++.+ .+
T Consensus       174 ~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~~~  253 (397)
T 3f9t_A          174 GIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIP  253 (397)
T ss_dssp             EEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGGTCSEEECCTTTTTCCCSS
T ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccccCCeEEEccccccCCCCC
Confidence            99988888776  7899999999999999999999986554321110       01221   579999999999854 46


Q ss_pred             ceEEEeeCCCcchhhHHHhhcccCCCCC--------CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Q 010008          312 GGMIFFKKDPVLGVELESAINNAVFPGL--------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE  383 (520)
Q Consensus       312 gG~I~~~~~~~~~~~l~~~i~~~~~p~~--------~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~  383 (520)
                      .|+++++++     .+.+.+... .+..        .+++....+.+..+++..+...++++..+++.++++++.+.|.+
T Consensus       254 ~g~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  327 (397)
T 3f9t_A          254 SGGILFKDI-----GYKRYLDVD-APYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKE  327 (397)
T ss_dssp             CEEEEESSG-----GGGGGTCEE-CTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEeCH-----HHHHhhccC-CccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            688888774     444444321 1111        12322223444444555444456678888999999999999998


Q ss_pred             CCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHH
Q 010008          384 LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF  463 (520)
Q Consensus       384 ~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~  463 (520)
                      .|++++.+. ..+++++++.    +..++.+.|.+.||.+...    .    .++++||+++..+    +++|++++++.
T Consensus       328 ~g~~~~~~~-~~~~~~~~~~----~~~~~~~~l~~~gi~v~~~----~----~~~~~Ri~~~~~~----~~e~i~~~~~~  390 (397)
T 3f9t_A          328 NNFKPVIEP-ILNIVAIEDE----DYKEVCKKLRDRGIYVSVC----N----CVKALRIVVMPHI----KREHIDNFIEI  390 (397)
T ss_dssp             TTCCBSSCC-SSSEEEEECT----THHHHHHHHHHTTCBCEEC----S----SSSEEEEECCTTC----CHHHHHHHHHH
T ss_pred             CCCEEEcCC-CccEEEEEeC----CHHHHHHHHHhCCeEEecc----C----CCCEEEEEEcCCC----CHHHHHHHHHH
Confidence            888866543 3455666653    2677888888889988542    2    2579999987443    48999999999


Q ss_pred             HHHHHH
Q 010008          464 IHEGVE  469 (520)
Q Consensus       464 i~~~l~  469 (520)
                      |+++++
T Consensus       391 l~~~l~  396 (397)
T 3f9t_A          391 LNSIKR  396 (397)
T ss_dssp             HHHHC-
T ss_pred             HHHhhC
Confidence            988754

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.95  E-value=1.7e-26  Score=239.15  Aligned_cols=329  Identities=13%  Similarity=0.081  Sum_probs=230.0

Q ss_pred             ceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecC-ChHHHHHH
Q 010008           96 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPL-SGSPANFE  174 (520)
Q Consensus        96 i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~-sGs~A~~~  174 (520)
                      +.+.++..++++.|++++...+.+.|          + .. ...+.+.+++++++++|++++.   +|.++ +|++|+.+
T Consensus        36 ~l~~~~~~~~~~~v~~a~~~~~~~~~----------~-~~-~~~~~~~~~~~la~~~g~~~~~---~v~~t~g~t~al~~  100 (393)
T 1vjo_A           36 LLLGPGPSNAHPSVLQAMNVSPVGHL----------D-PA-FLALMDEIQSLLRYVWQTENPL---TIAVSGTGTAAMEA  100 (393)
T ss_dssp             EECSSSCCCCCHHHHHHHSSCCCCTT----------S-HH-HHHHHHHHHHHHHHHHTCCCSC---EEEESSCHHHHHHH
T ss_pred             eeccCCCCCCCHHHHHHHhccccccc----------C-HH-HHHHHHHHHHHHHHHhCCCCCc---EEEEeCchHHHHHH
Confidence            34445666789999999987664322          1 11 2344445668999999997641   23344 55599999


Q ss_pred             HHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC
Q 010008          175 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP  254 (520)
Q Consensus       175 ~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p  254 (520)
                      ++.++++|||+|+++++.|.+.   .+   ...+...|.  +++.++++. ++.+|+++|++.+++.++++|+++.++||
T Consensus       101 ~~~~~~~~gd~Vl~~~~~~~~~---~~---~~~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~v~~~~~~np  171 (393)
T 1vjo_A          101 TIANAVEPGDVVLIGVAGYFGN---RL---VDMAGRYGA--DVRTISKPW-GEVFSLEELRTALETHRPAILALVHAETS  171 (393)
T ss_dssp             HHHHHCCTTCEEEEEESSHHHH---HH---HHHHHHTTC--EEEEEECCT-TCCCCHHHHHHHHHHHCCSEEEEESEETT
T ss_pred             HHHhccCCCCEEEEEcCChhHH---HH---HHHHHHcCC--ceEEEecCC-CCCCCHHHHHHHHhhCCceEEEEeccCCC
Confidence            9999999999999999876541   01   112233454  666666763 57899999999997657999999988877


Q ss_pred             C--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHH
Q 010008          255 R--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES  329 (520)
Q Consensus       255 ~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~  329 (520)
                      +  ..|+++|.++|+++|+++++|++|..|...     ..+.  ++|++++|+||++.+|.+ |++++++      ++.+
T Consensus       172 tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~-----~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~------~~~~  240 (393)
T 1vjo_A          172 TGARQPLEGVGELCREFGTLLLVDTVTSLGGVP-----IFLDAWGVDLAYSCSQKGLGCSPGASPFTMSS------RAIE  240 (393)
T ss_dssp             TTEECCCTTHHHHHHHHTCEEEEECTTTTTTSC-----CCTTTTTCSEEECCSSSTTCSCSSCEEEEECH------HHHH
T ss_pred             cceeccHHHHHHHHHHcCCEEEEECCccccCcC-----CcccccCccEEEEcCcccccCCCceEEEEECH------HHHH
Confidence            6  778999999999999999999998855332     1222  579999999999977655 9999987      5665


Q ss_pred             hhccc------C-C------------CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEec
Q 010008          330 AINNA------V-F------------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVS  390 (520)
Q Consensus       330 ~i~~~------~-~------------p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~  390 (520)
                      ++...      . +            ....|+++...++++..+++.....++++..+++.++++.+.+.|.+.|+++..
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~  320 (393)
T 1vjo_A          241 KLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHV  320 (393)
T ss_dssp             HHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSS
T ss_pred             HHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence            55221      0 0            011236677777777778876543346778889999999999999888888765


Q ss_pred             CCC--CCeeEEEEecCCCCCHHHHHHHHhhc-CeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          391 GGS--DNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       391 ~gt--~~~~~~vd~~~~g~~~~~~~~~L~~~-gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      +..  ..+++++.+. .+.+..++.+.|.+. ||.+..+    .. ...++++||+...++   .++++++++++.|.++
T Consensus       321 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g----~~-~~~~~~iRis~~~~~---~~~~~i~~~~~~l~~~  391 (393)
T 1vjo_A          321 EKEYRLPTLTTVCIP-DGVDGKAVARRLLNEHNIEVGGG----LG-ELAGKVWRVGLMGFN---SRKESVDQLIPALEQV  391 (393)
T ss_dssp             CGGGBCSSEEEEECC-TTCCHHHHHHHHHHHHCEECEEC----CG-GGTTTEEEEECCGGG---CSHHHHHHHHHHHHHH
T ss_pred             CccccCCcEEEEEcC-CCCCHHHHHHHHHhhCCEEEecC----cc-ccCCCEEEEeCCccC---ChHHHHHHHHHHHHHH
Confidence            421  1244555552 355777787777766 9998543    21 123678999953332   2367899999999876


Q ss_pred             H
Q 010008          468 V  468 (520)
Q Consensus       468 l  468 (520)
                      +
T Consensus       392 l  392 (393)
T 1vjo_A          392 L  392 (393)
T ss_dssp             H
T ss_pred             h
Confidence            5

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.95  E-value=1.2e-26  Score=236.92  Aligned_cols=331  Identities=15%  Similarity=0.123  Sum_probs=227.4

Q ss_pred             cceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCc-c-hhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHH
Q 010008           95 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG-N-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN  172 (520)
Q Consensus        95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g-~-~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~  172 (520)
                      .+++.++...+++.|++++...+.+          +++. . +..++    .++++++++| .++++...+...+|++|+
T Consensus         5 ~~~~~~gp~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~----l~~~la~~~g-~~~~~~~v~~~~g~t~a~   69 (366)
T 1m32_A            5 YLLLTPGPLTTSRTVKEAMLFDSCT----------WDDDYNIGVVEQ----IRQQLTALAT-ASEGYTSVLLQGSGSYAV   69 (366)
T ss_dssp             CEECSSSSCCCCHHHHHTTCCCCCT----------TSHHHHTTTHHH----HHHHHHHHHC-SSSSEEEEEEESCHHHHH
T ss_pred             cccccCCCcCCCHHHHHHHhhhhcC----------CCHHHHHHHHHH----HHHHHHHHhC-CCCcCcEEEEecChHHHH
Confidence            4777777666899999998764311          1110 0 22333    4478889999 332211123345566999


Q ss_pred             HHHHHhhCCCCCEEEEcC-CCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc-CCcEEEEcC
Q 010008          173 FEVYTAILKPHDRIMGLD-LPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-RPKLIIAGA  250 (520)
Q Consensus       173 ~~~l~all~pGD~Vl~~~-~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~-~pklIi~~~  250 (520)
                      ..++.++++|||+|++++ +.|++.+.       ..+...|.  +++.++++ +++.+|++++++++++. ++++|++..
T Consensus        70 ~~~~~~~~~~gd~vi~~~~~~~~~~~~-------~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~  139 (366)
T 1m32_A           70 EAVLGSALGPQDKVLIVSNGAYGARMV-------EMAGLMGI--AHHAYDCG-EVARPDVQAIDAILNADPTISHIAMVH  139 (366)
T ss_dssp             HHHHHHSCCTTCCEEEEESSHHHHHHH-------HHHHHHTC--CEEEEECC-TTSCCCHHHHHHHHHHCTTCCEEEEES
T ss_pred             HHHHHHhcCCCCeEEEEeCCCccHHHH-------HHHHHhCC--ceEEEeCC-CCCCCCHHHHHHHHhcCCCeEEEEEec
Confidence            999999999999988776 33332110       11223354  45556665 45779999999999874 588998887


Q ss_pred             CCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhH
Q 010008          251 SAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL  327 (520)
Q Consensus       251 s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l  327 (520)
                      ++||+  ..|+++|.++|+++|+++|+|++|..|....+...   .++|++++|+||++.||.| |++++++      ++
T Consensus       140 ~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~---~~~di~~~s~~K~~~~~~g~G~~~~~~------~~  210 (366)
T 1m32_A          140 SETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAA---LHIDYLISSANKCIQGVPGFAFVIARE------QK  210 (366)
T ss_dssp             EETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTT---TTCSEEEEESSSTTCCCSSEEEEEEEH------HH
T ss_pred             ccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcCccccc---cCccEEEecCcccccCCCceEEEEECH------HH
Confidence            77765  78999999999999999999999876644222111   1479999999999988877 9999998      56


Q ss_pred             HHhhcccCC-----------------CCCCCCChHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHHHHHCCCEEe
Q 010008          328 ESAINNAVF-----------------PGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASRLVELGYKLV  389 (520)
Q Consensus       328 ~~~i~~~~~-----------------p~~~g~p~~~~iaala~al~~~~~~~-~~~~~~~i~~na~~l~~~L~~~G~~v~  389 (520)
                      .+++.....                 ....++++...++++..+++.....+ +++..+++.++++++.+.|.+.|+++.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~  290 (366)
T 1m32_A          211 LAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTL  290 (366)
T ss_dssp             HTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBS
T ss_pred             HHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHCCCeec
Confidence            555543210                 01124566677777777777654333 677888999999999999988888765


Q ss_pred             cCC--CCCeeEEEEecC-CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          390 SGG--SDNHLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       390 ~~g--t~~~~~~vd~~~-~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      .+.  ..++++++++.. .+.+..++.+.|.+.||.+..    |.  .+.++++|++.+..+    +++|++++++.|++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~----~~--~~~~~~iRi~~~~~~----~~~~i~~~~~~l~~  360 (366)
T 1m32_A          291 LDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYP----GK--VSQSDCFRIGNIGEV----YAADITALLTAIRT  360 (366)
T ss_dssp             SCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEE----CC--CSSSCEEEEECCSSC----CHHHHHHHHHHHHH
T ss_pred             cCchhcCceEEEEEcCccCCCCHHHHHHHHHHCCEEEEC----Cc--CCCCCEEEEecCCCC----CHHHHHHHHHHHHH
Confidence            431  123466777642 145778888888888999853    32  124678999987554    48999999999987


Q ss_pred             HHH
Q 010008          467 GVE  469 (520)
Q Consensus       467 ~l~  469 (520)
                      +++
T Consensus       361 ~~~  363 (366)
T 1m32_A          361 AMY  363 (366)
T ss_dssp             HCT
T ss_pred             HHH
Confidence            653

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.95  E-value=1.3e-26  Score=239.94  Aligned_cols=358  Identities=13%  Similarity=0.068  Sum_probs=238.0

Q ss_pred             ccccChHHHHHHHHHHHHhhccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 010008           74 LGEADPEVCEIITKEKERQFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA  151 (520)
Q Consensus        74 l~~~d~~~~~~~~~e~~~~~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~l  151 (520)
                      +....+..+..+.+..++..+.|+|..+++.  .++.|.+++...+.+. ..+|+.      .....++++...+++.+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~------~~g~~~l~~~la~~~~~~   79 (389)
T 1gd9_A            7 LELVSASEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKG-LTHYGP------NIGLLELREAIAEKLKKQ   79 (389)
T ss_dssp             HHHSCCCHHHHHHHHHHTCSSCEECCCCSCSSCCCHHHHHHHHHHHHTT-CCSCCC------TTCCHHHHHHHHHHHHHH
T ss_pred             hHhCChhHHHHHHHHHhhhcCeEecCCCCCCCCCCHHHHHHHHHHHhCC-CCCCCC------CCCcHHHHHHHHHHHHHH
Confidence            3344444443333333333467888877753  5789999998887543 123432      112346666666777777


Q ss_pred             cCC--CCCCCceeeecCCh-HHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CC
Q 010008          152 FNL--DENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TG  227 (520)
Q Consensus       152 fg~--~~~~~~~~V~~~sG-s~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~  227 (520)
                      +|.  ++++   .|.+++| ++|+.+++.++++|||+|++.+|.|.++..        .+...|.  +++.++++++ ++
T Consensus        80 ~g~~~~~~~---~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~  146 (389)
T 1gd9_A           80 NGIEADPKT---EIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAP--------AVILAGG--KPVEVPTYEEDEF  146 (389)
T ss_dssp             HCCCCCTTT---SEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHH--------HHHHHTC--EEEEEECCGGGTT
T ss_pred             hCCCCCCCC---eEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHCCC--EEEEeccCCccCC
Confidence            785  4542   0344555 599999999999999999999998865421        2334454  5666666542 46


Q ss_pred             CCCHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccc-cCC--CC---Ccc
Q 010008          228 LVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV-VAD--PF---KYC  296 (520)
Q Consensus       228 ~iD~d~le~~i~~~~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~~--p~---~~a  296 (520)
                      .+|++++++++++ ++++|+++.++||+  ..   ++++|+++|+++|+++|+|++|..+. ..+. ..+  .+   ...
T Consensus       147 ~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~~~  224 (389)
T 1gd9_A          147 RLNVDELKKYVTD-KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFI-YDDARHYSIASLDGMFER  224 (389)
T ss_dssp             CCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCB-CTTCCCCCGGGSTTCGGG
T ss_pred             CCCHHHHHHhcCc-CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcc-cCCCCCCCHhhccCCCCC
Confidence            7899999999987 89999988888876  44   58999999999999999999976543 2221 111  11   246


Q ss_pred             cEEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Q 010008          297 DVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSN  373 (520)
Q Consensus       297 Div~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~-~~~~~~~~i~~n  373 (520)
                      |++++|+||++  +|.|.|++++++      ++.+.+.........+. +....+++..+|+..... .+++..+++.++
T Consensus       225 ~i~~~s~sK~~~~~G~r~G~~~~~~------~~~~~l~~~~~~~~~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  297 (389)
T 1gd9_A          225 TITVNGFSKTFAMTGWRLGFVAAPS------WIIERMVKFQMYNATCP-VTFIQYAAAKALKDERSWKAVEEMRKEYDRR  297 (389)
T ss_dssp             EEEEEESTTTTTCGGGCCEEEECCH------HHHHHHHHHHTTTTCSC-CHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecChhhcCCcccceEEEEECH------HHHHHHHHHHhhhccCC-CHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence            89999999997  467789999987      67766654333222233 333444444455432111 346677888899


Q ss_pred             HHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHh-hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCC
Q 010008          374 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGF  452 (520)
Q Consensus       374 a~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~-~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~  452 (520)
                      ++.+.+.|.+.|+++..+. .+.++++++...+.+..++.+.|. ++||.+..+..++   +..++++||++..      
T Consensus       298 ~~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~---~~~~~~iRi~~~~------  367 (389)
T 1gd9_A          298 RKLVWKRLNEMGLPTVKPK-GAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFG---KAGEGYVRISYAT------  367 (389)
T ss_dssp             HHHHHHHHHHTTCCCCCCC-BTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGC---GGGTTBEEEECCS------
T ss_pred             HHHHHHHHHHcCCeecCCC-eeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhC---CCCCCeEEEEecC------
Confidence            9999999988888776532 344566676533557777777775 8999985432221   1135789999652      


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q 010008          453 SEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       453 ~~~d~~~la~~i~~~l~~  470 (520)
                      ++++++++++.|.++++.
T Consensus       368 ~~~~i~~~l~~l~~~~~~  385 (389)
T 1gd9_A          368 AYEKLEEAMDRMERVLKE  385 (389)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            579999999999888753

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.95  E-value=9.9e-27  Score=240.72  Aligned_cols=330  Identities=13%  Similarity=0.091  Sum_probs=229.8

Q ss_pred             ceEe-cCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHH
Q 010008           96 LELI-ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE  174 (520)
Q Consensus        96 i~Li-asen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~  174 (520)
                      +.|. ++...+++.|++++...+.+.        +++   .. .......++++++++|+++++   .+.+.+|++|+.+
T Consensus        10 ~yl~~~~~~~~~~~v~~a~~~~~~~~--------~~~---~~-~~~~~~l~~~la~~~g~~~~~---v~~t~g~t~a~~~   74 (392)
T 2z9v_A           10 VITLTAGPVNAYPEVLRGLGRTVLYD--------YDP---AF-QLLYEKVVDKAQKAMRLSNKP---VILHGEPVLGLEA   74 (392)
T ss_dssp             SEECSSSCCCCCHHHHHHTTSCCCCT--------TSH---HH-HHHHHHHHHHHHHHTTCSSCC---EEESSCTHHHHHH
T ss_pred             ceeecCCCcCCCHHHHHHHhcccccc--------ccH---HH-HHHHHHHHHHHHHHhCCCCCE---EEEeCCchHHHHH
Confidence            4444 344578999999998766431        111   11 122234568899999997642   2334556699999


Q ss_pred             HHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh-cCCcEEEEcCCCC
Q 010008          175 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-FRPKLIIAGASAY  253 (520)
Q Consensus       175 ~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~-~~pklIi~~~s~~  253 (520)
                      ++.++++|||+|+++++.|.++.   +.   ......|.  +++.+++++ ++.+|+++++++++. .++++|++++++|
T Consensus        75 ~~~~~~~~gd~Vl~~~~~~~~~~---~~---~~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~~v~~~~~~n  145 (392)
T 2z9v_A           75 AAASLISPDDVVLNLASGVYGKG---FG---YWAKRYSP--HLLEIEVPY-NEAIDPQAVADMLKAHPEITVVSVCHHDT  145 (392)
T ss_dssp             HHHHHCCTTCCEEEEESSHHHHH---HH---HHHHHHCS--CEEEEECCT-TSCCCHHHHHHHHHHCTTCCEEEEESEEG
T ss_pred             HHHHhcCCCCEEEEecCCcccHH---HH---HHHHHcCC--ceEEeeCCC-CCCCCHHHHHHHHhcCCCCcEEEEeccCC
Confidence            99999999999999998764431   10   01122344  556666663 467999999999953 2789999988888


Q ss_pred             CC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCcccCCCCc-eEEEeeCCCcchhhHH
Q 010008          254 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE  328 (520)
Q Consensus       254 p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~  328 (520)
                      |+  ..|+++|.++|+++|+++++|++|..|....     ++.  ++|++++|+||++.||.| |++++++      ++.
T Consensus       146 ptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~-----~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~------~~~  214 (392)
T 2z9v_A          146 PSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKT-----HPEDCKADIYVTGPNKCLGAPPGLTMMGVSE------RAW  214 (392)
T ss_dssp             GGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSC-----CGGGGTCSEEEECSSSTTCCCSCCEEEEECH------HHH
T ss_pred             CCceeccHHHHHHHHHHcCCeEEEEcccccCCccc-----ccccccceEEEecCcccccCCCceeEEEECH------HHH
Confidence            75  7899999999999999999999987654322     122  479999999999988776 9999987      555


Q ss_pred             HhhcccC-------------------CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEe
Q 010008          329 SAINNAV-------------------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLV  389 (520)
Q Consensus       329 ~~i~~~~-------------------~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~  389 (520)
                      +++....                   .....++++...++++..+++.....++++..+++.++++++.+.|.+.|+++.
T Consensus       215 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~  294 (392)
T 2z9v_A          215 AKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAMGLSVW  294 (392)
T ss_dssp             HHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBS
T ss_pred             HHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCeec
Confidence            5543210                   011245677777777777777654434677888999999999999988888776


Q ss_pred             c-CC--CCCeeEEEEecCCCCCHHHHHHHHhhc-CeEEcCCCCCCCCCCCCCCEEEEccCC-ccccCCCHHHHHHHHHHH
Q 010008          390 S-GG--SDNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPA-MTTRGFSEKEFVAIADFI  464 (520)
Q Consensus       390 ~-~g--t~~~~~~vd~~~~g~~~~~~~~~L~~~-gI~v~~~~~Pg~~~~~~~~giRig~~~-~tt~g~~~~d~~~la~~i  464 (520)
                      . +.  ...+++++.+. .+.+..++.+.|.+. ||.+..+..     +..++++||++.. .    .+++|++++++.|
T Consensus       295 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~gi~v~~g~~-----~~~~~~lRi~~~~~~----~~~~~i~~~~~~l  364 (392)
T 2z9v_A          295 AASDSIASPTTTAVRTP-DGVDEKALRQAARARYGVVFSSGRG-----ETLGKLTRIGHMGPT----AQPIYAIAALTAL  364 (392)
T ss_dssp             SSSGGGBCTTEEEEECC-TTCCHHHHHHHHHHHHCEECEECCG-----GGTTTEEEEECCGGG----CSHHHHHHHHHHH
T ss_pred             cCCccccCCceEEEECC-CCCCHHHHHHHHHhcCCEEEecCCC-----CCCCCeEEEeCcccc----cCHHHHHHHHHHH
Confidence            5 21  12455566653 356777888888775 999854321     1235789999532 2    3489999999999


Q ss_pred             HHHHHH
Q 010008          465 HEGVEI  470 (520)
Q Consensus       465 ~~~l~~  470 (520)
                      +++++.
T Consensus       365 ~~~~~~  370 (392)
T 2z9v_A          365 GGAMNA  370 (392)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988763

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.95  E-value=2.5e-26  Score=238.07  Aligned_cols=331  Identities=12%  Similarity=0.060  Sum_probs=229.5

Q ss_pred             ceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCC-hHHHHHH
Q 010008           96 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS-GSPANFE  174 (520)
Q Consensus        96 i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~s-Gs~A~~~  174 (520)
                      +.+.++...+++.|++++...+.+.|            ..+.+......++.+++++|++++.   +|.+++ |++|+.+
T Consensus        20 ~~~~~~p~~~~~~v~~a~~~~~~~~~------------~~~~~~~~~~l~~~la~~~~~~~~~---~v~~~~g~t~al~~   84 (396)
T 2ch1_A           20 IMMGPGPSNCSKRVLTAMTNTVLSNF------------HAELFRTMDEVKDGLRYIFQTENRA---TMCVSGSAHAGMEA   84 (396)
T ss_dssp             BCCSSSSCCCCHHHHHHTTSCCCCTT------------CHHHHHHHHHHHHHHHHHHTCCCSC---EEEESSCHHHHHHH
T ss_pred             eeecCCCCCCCHHHHHHhccccccCC------------ChhHHHHHHHHHHHHHHHhCCCCCc---EEEECCcHHHHHHH
Confidence            44444555678999999876553322            1122232334568899999998751   343445 5599999


Q ss_pred             HHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC
Q 010008          175 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP  254 (520)
Q Consensus       175 ~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p  254 (520)
                      ++.++++|||+|+++++.|.++...      ..+...|.  +++.++++ +++.+|++++++++++.++++|+++.++||
T Consensus        85 ~~~~~~~~gd~vl~~~~~~~~~~~~------~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~v~~~~~~np  155 (396)
T 2ch1_A           85 MLSNLLEEGDRVLIAVNGIWAERAV------EMSERYGA--DVRTIEGP-PDRPFSLETLARAIELHQPKCLFLTHGDSS  155 (396)
T ss_dssp             HHHHHCCTTCEEEEEESSHHHHHHH------HHHHHTTC--EEEEEECC-TTSCCCHHHHHHHHHHHCCSEEEEESEETT
T ss_pred             HHHHhcCCCCeEEEEcCCcccHHHH------HHHHHcCC--ceEEecCC-CCCCCCHHHHHHHHHhCCCCEEEEECCCCC
Confidence            9999999999999999877553100      01233454  56666666 357899999999997657999999888887


Q ss_pred             C--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHH
Q 010008          255 R--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES  329 (520)
Q Consensus       255 ~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~  329 (520)
                      +  ..|+++|.++|+++|+++|+|++|..|...     ..+.  ++|++++|+||++.|+.| |++++++      ++.+
T Consensus       156 tG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~-----~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~------~~~~  224 (396)
T 2ch1_A          156 SGLLQPLEGVGQICHQHDCLLIVDAVASLCGVP-----FYMDKWEIDAVYTGAQKVLGAPPGITPISISP------KALD  224 (396)
T ss_dssp             TTEECCCTTHHHHHHHTTCEEEEECTTTBTTBC-----CCTTTTTCCEEECCCC-CCCCCSSCEEEEECH------HHHH
T ss_pred             CceecCHHHHHHHHHHcCCEEEEEccccccCCc-----cchhhcCcCEEEEcCCccccCCCCeEEEEECH------HHHH
Confidence            6  778999999999999999999998765332     1222  479999999999887766 8999887      4544


Q ss_pred             hhccc-------C---------C------CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCE
Q 010008          330 AINNA-------V---------F------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYK  387 (520)
Q Consensus       330 ~i~~~-------~---------~------p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~  387 (520)
                      .+...       .         +      ....++++...++++..+++.....++++..+++.++++.+.+.|.+.|++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  304 (396)
T 2ch1_A          225 VIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLD  304 (396)
T ss_dssp             HHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence            43211       0         0      112355666666666667776543456788889999999999999888888


Q ss_pred             EecCCC---CCeeEEEEecCCCCCHHHHHHHHhh-cCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHH
Q 010008          388 LVSGGS---DNHLVLVDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF  463 (520)
Q Consensus       388 v~~~gt---~~~~~~vd~~~~g~~~~~~~~~L~~-~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~  463 (520)
                      ++.+..   ..+++++.+. .+.+..++.+.|.+ .||.+..+..     +..++++||++...+   .+++|++++++.
T Consensus       305 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~~gi~v~~g~~-----~~~~~~iRi~~~~~~---~~~e~i~~~~~~  375 (396)
T 2ch1_A          305 IFVKDPRHRLPTVTGIMIP-KGVDWWKVSQYAMNNFSLEVQGGLG-----PTFGKAWRVGIMGEC---STVQKIQFYLYG  375 (396)
T ss_dssp             BSSCSGGGBCTTEEEEECC-TTCCHHHHHHHHHHHHCBCCBCCCG-----GGTTTEEEEECCGGG---CSHHHHHHHHHH
T ss_pred             eccCCccccCCceEEEEcC-CCCCHHHHHHHHHHhCCEEEecCcc-----ccCCCEEEEECCCCc---CCHHHHHHHHHH
Confidence            765421   1135566653 35677788777755 6999854321     124578999973322   358999999999


Q ss_pred             HHHHHHH
Q 010008          464 IHEGVEI  470 (520)
Q Consensus       464 i~~~l~~  470 (520)
                      |+++++.
T Consensus       376 l~~~l~~  382 (396)
T 2ch1_A          376 FKESLKA  382 (396)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.95  E-value=1.4e-26  Score=240.02  Aligned_cols=331  Identities=18%  Similarity=0.133  Sum_probs=225.8

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCceeeecCChH
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGS  169 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~sGs  169 (520)
                      +.|+|..+++.  +++.+.+++...+.... .+|+..   .|   ..++++...+++.+.+|++  ++    +|.+++|+
T Consensus        32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~~---~g---~~~lr~~ia~~~~~~~g~~~~~~----~i~~t~g~  100 (385)
T 1b5p_A           32 DLVALTAGEPDFDTPEHVKEAARRALAQGK-TKYAPP---AG---IPELREALAEKFRRENGLSVTPE----ETIVTVGG  100 (385)
T ss_dssp             CCEECCCSSCSSCCCHHHHHHHHHHHHTTC-CSCCCT---TC---CHHHHHHHHHHHHHTTCCCCCGG----GEEEESHH
T ss_pred             CEEEecCCCCCCCCCHHHHHHHHHHHhcCC-CCCCCC---CC---CHHHHHHHHHHHHHHhCCCCChH----HEEEcCCh
Confidence            56888777763  57889999887775432 234321   12   2455555667777777864  43    45567776


Q ss_pred             -HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC-CCCCCCHHHHHHHhhhcCCcEEE
Q 010008          170 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLII  247 (520)
Q Consensus       170 -~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-~~~~iD~d~le~~i~~~~pklIi  247 (520)
                       +|+.+++.++++|||+|++++|.|.++.        ..+...|.  +++.+++++ +++.+|++++++++++ ++|+|+
T Consensus       101 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~--------~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~  169 (385)
T 1b5p_A          101 SQALFNLFQAILDPGDEVIVLSPYWVSYP--------EMVRFAGG--VVVEVETLPEEGFVPDPERVRRAITP-RTKALV  169 (385)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEEESCCTHHH--------HHHHHTTC--EEEEEECCGGGTTCCCHHHHHTTCCT-TEEEEE
T ss_pred             HHHHHHHHHHhcCCCCEEEEcCCCchhHH--------HHHHHcCC--EEEEeecCcccCCCCCHHHHHHhcCC-CCEEEE
Confidence             9999999999999999999999875432        12334565  666677764 3568999999999987 799999


Q ss_pred             EcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC----cccEEEeccCccc--CCCCceEEE
Q 010008          248 AGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSL--RGPRGGMIF  316 (520)
Q Consensus       248 ~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~----~aDiv~~S~hK~l--~GprgG~I~  316 (520)
                      +++++||+  .++   +++|.++|+++|++||+|++|. .+...+ ...++.    ..++++.|+||++  +|.|.|+++
T Consensus       170 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~-~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~  247 (385)
T 1b5p_A          170 VNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYE-HLLYEG-EHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYAC  247 (385)
T ss_dssp             EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBSSS-CCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEE
T ss_pred             EeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccch-hcccCC-CCCCHHHcCCCCEEEEEechhhcCCcccceEEEE
Confidence            98899987  444   8899999999999999999964 344333 111221    3468899999987  578899999


Q ss_pred             eeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHH---hcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCC
Q 010008          317 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH---AQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS  393 (520)
Q Consensus       317 ~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~---~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt  393 (520)
                      +++      ++.+.+......+..+.+...+.+ ...+|+.   . ....++..+++.++++.+.+.|.+.|+.+..+ .
T Consensus       248 ~~~------~~~~~l~~~~~~~~~~~~~~~~~a-~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~  318 (385)
T 1b5p_A          248 GPK------EVIKAMASVSRQSTTSPDTIAQWA-TLEALTNQEAS-RAFVEMAREAYRRRRDLLLEGLTALGLKAVRP-S  318 (385)
T ss_dssp             CCH------HHHHHHHHHHHTTTCSCCHHHHHH-HHHHHHCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC-S
T ss_pred             eCH------HHHHHHHHHHhhccCCCCHHHHHH-HHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHHHHHHCCCeecCC-C
Confidence            977      666666543323323333333333 3335542   1 12346677888888999999998878876554 2


Q ss_pred             CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          394 DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       394 ~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      .+++.|+++...+.+..++.+.|.+.||.+..    |.... .++++||++.      .+++++++..+.|.+++
T Consensus       319 ~~~~~~~~~~~~~~~~~~l~~~l~~~gv~v~~----g~~f~-~~~~iRis~~------~~~~~i~~~l~~l~~~l  382 (385)
T 1b5p_A          319 GAFYVLMDTSPIAPDEVRAAERLLEAGVAVVP----GTDFA-AFGHVRLSYA------TSEENLRKALERFARVL  382 (385)
T ss_dssp             BTTEEEEECTTTCSSHHHHHHHHHHTTEECEE----SGGGT-CTTEEEEECC------SCHHHHHHHHHHGGGGC
T ss_pred             eeEEEEEecCCCCCCHHHHHHHHHHCCeEEec----ccccC-CCCeEEEEec------CCHHHHHHHHHHHHHHH
Confidence            34556777754456777788888899999854    32211 1578999964      34788888777776554

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.95  E-value=5.7e-27  Score=241.96  Aligned_cols=337  Identities=15%  Similarity=0.097  Sum_probs=230.8

Q ss_pred             ccceEecCC-CCChHHHHHHHhhhhhccCCCCCCCC-CCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHH
Q 010008           94 KSLELIASE-NFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA  171 (520)
Q Consensus        94 ~~i~Liase-n~~~~~V~ea~~s~l~~~y~~G~p~~-ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A  171 (520)
                      +.+.|..+. .+.|+.|++++...+.+.. ...+.. +.|..  +. ......++.+++++|++++++   +...+|++|
T Consensus        16 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~-~~~~~~~~~y~~--~~-~~~~~l~~~la~~~g~~~~~v---~~~~g~t~a   88 (390)
T 1elu_A           16 NKTYFNFGGQGILPTVALEAITAMYGYLQ-ENGPFSIAANQH--IQ-QLIAQLRQALAETFNVDPNTI---TITDNVTTG   88 (390)
T ss_dssp             TSEECCTTTCCCCCHHHHHHHHHHHHHHH-HHCSSSHHHHHH--HH-HHHHHHHHHHHHHTTSCGGGE---EEESSHHHH
T ss_pred             CeEEecCCccCCCCHHHHHHHHHHHHHHh-ccCCcchhhHHH--HH-HHHHHHHHHHHHHcCCCHHHE---EEeCChHHH
Confidence            346665443 3567889999988876432 111110 01111  11 222345578999999987532   334556699


Q ss_pred             HHHHHHhh-CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC-CCCCCCHHHHHHHhhhcCCcEEEEc
Q 010008          172 NFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIAG  249 (520)
Q Consensus       172 ~~~~l~al-l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-~~~~iD~d~le~~i~~~~pklIi~~  249 (520)
                      +.+++.++ ++|||+|+++++.|.++.....    ......|.  +++.+++++ +++.+|++++++.+++ ++++|+++
T Consensus        89 ~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~----~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~  161 (390)
T 1elu_A           89 CDIVLWGLDWHQGDEILLTDCEHPGIIAIVQ----AIAARFGI--TYRFFPVAATLNQGDAAAVLANHLGP-KTRLVILS  161 (390)
T ss_dssp             HHHHHHHSCCCTTCEEEEETTCCHHHHHHHH----HHHHHHCC--EEEEECCGGGSSSSCHHHHHHTTCCT-TEEEEEEE
T ss_pred             HHHHHhCCCCCCCCEEEEecCcccHHHHHHH----HHHHHhCc--EEEEEcCCCCCCccchHHHHHHhcCC-CceEEEEe
Confidence            99999999 8999999999998765421100    00122344  566666643 3578999999999987 89999999


Q ss_pred             CCCCCC--CCCHHHHHHHHH----HhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCc
Q 010008          250 ASAYPR--DFDYPRMRQIAD----AVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPV  322 (520)
Q Consensus       250 ~s~~p~--~~d~~~i~~ia~----~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~  322 (520)
                      .++||+  ..|+++|.++|+    ++|+++|+|++|..|....+...   .+.|++++|+||++.|+.| |++++++   
T Consensus       162 ~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~---~~~d~~~~s~~K~~~~~~g~G~~~~~~---  235 (390)
T 1elu_A          162 HLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSR---LEVDYYAFTGHKWFAGPAGVGGLYIHG---  235 (390)
T ss_dssp             SBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTT---SCCSEEEEESSSTTCCCTTCEEEEECT---
T ss_pred             ccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhh---cCCCEEEccccccccCCCceEEEEECH---
Confidence            888876  789999999999    99999999999986643222111   1579999999998766665 9999987   


Q ss_pred             chhhHHHhhcccCC---------------------CCCCCCChHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHH
Q 010008          323 LGVELESAINNAVF---------------------PGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASR  380 (520)
Q Consensus       323 ~~~~l~~~i~~~~~---------------------p~~~g~p~~~~iaala~al~~~~~~~-~~~~~~~i~~na~~l~~~  380 (520)
                         ++.+++.....                     ....++++...++++..+++.+...+ +++..+++.++++.+.+.
T Consensus       236 ---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~  312 (390)
T 1elu_A          236 ---DCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRG  312 (390)
T ss_dssp             ---TTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred             ---HhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence               45555443211                     01135666666666666777554334 678889999999999999


Q ss_pred             HHHC-CCEEecC-CCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHH
Q 010008          381 LVEL-GYKLVSG-GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFV  458 (520)
Q Consensus       381 L~~~-G~~v~~~-gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~  458 (520)
                      |.+. |++++.+ .....++++++. .+.+..++.+.|.+.||.+..    |.    .++++||+++..+    +++|++
T Consensus       313 L~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~----~~----~~~~iRis~~~~~----~~~~i~  379 (390)
T 1elu_A          313 LNQLPHVHCLATSAPQAGLVSFTVD-SPLGHRAIVQKLEEQRIYLRT----IA----DPDCIRACCHYIT----DEEEIN  379 (390)
T ss_dssp             HHHSTTEEESCSSCCSSSEEEEEEC-SSSCHHHHHHHHHHTTEECEE----ET----TTTEEEEECCTTC----CHHHHH
T ss_pred             HHhcCCcEEecCccccccEEEEEcC-CCCCHHHHHHHHHHCCEEEEe----cC----CCCeEEEecccCC----CHHHHH
Confidence            9885 8888753 123456666774 355778888888899999853    32    2578999975443    489999


Q ss_pred             HHHHHHHH
Q 010008          459 AIADFIHE  466 (520)
Q Consensus       459 ~la~~i~~  466 (520)
                      ++++.|++
T Consensus       380 ~~~~~l~~  387 (390)
T 1elu_A          380 HLLARLAD  387 (390)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            99988764

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.95  E-value=6.7e-27  Score=241.74  Aligned_cols=337  Identities=15%  Similarity=0.130  Sum_probs=233.3

Q ss_pred             ccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC--CCCCCCceeeecCCh-
Q 010008           94 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSG-  168 (520)
Q Consensus        94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg--~~~~~~~~~V~~~sG-  168 (520)
                      +.|+|..+++  +.++.|++++...+.+. ..+|+..        ..++++.+++++++.+|  ++++    +|.+++| 
T Consensus        28 ~~i~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~--------~~~l~~~la~~l~~~~g~~~~~~----~i~~~~g~   94 (391)
T 3dzz_A           28 KELPMWIAEMDFKIAPEIMASMEEKLKVA-AFGYESV--------PAEYYKAVADWEEIEHRARPKED----WCVFASGV   94 (391)
T ss_dssp             TCEECCSSCCSSCCCHHHHHHHHHHHTTC-CCCCBCC--------CHHHHHHHHHHHHHHHSCCCCGG----GEEEESCH
T ss_pred             CceeccccCCCCCCCHHHHHHHHHHHhcC-cCCCCCC--------CHHHHHHHHHHHHHHhCCCCCHH----HEEECCCH
Confidence            5678877664  36899999999887653 2233321        24566667788999999  4454    4455666 


Q ss_pred             HHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccC--CCCCCCCHHHHHHHhhhcCCcEE
Q 010008          169 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD--ESTGLVDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       169 s~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d--~~~~~iD~d~le~~i~~~~pklI  246 (520)
                      ++|+.+++.++++|||+|++.++.|.++..        .+...|.  +++.++++  ..++.+|+++|+++++..++++|
T Consensus        95 ~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v  164 (391)
T 3dzz_A           95 VPAISAMVRQFTSPGDQILVQEPVYNMFYS--------VIEGNGR--RVISSDLIYENSKYSVNWADLEEKLATPSVRMM  164 (391)
T ss_dssp             HHHHHHHHHHHSCTTCEEEECSSCCHHHHH--------HHHHTTC--EEEECCCEEETTEEECCHHHHHHHHTSTTEEEE
T ss_pred             HHHHHHHHHHhCCCCCeEEECCCCcHHHHH--------HHHHcCC--EEEEeeeeecCCceeecHHHHHHHHhccCceEE
Confidence            599999999999999999999998765421        2334454  66677664  22345999999999984489999


Q ss_pred             EEcCCCCCC--C---CCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-----ccc--EEEeccCccc--CCCCc
Q 010008          247 IAGASAYPR--D---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCD--VVTTTTHKSL--RGPRG  312 (520)
Q Consensus       247 i~~~s~~p~--~---~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-----~aD--iv~~S~hK~l--~Gprg  312 (520)
                      ++..++||+  .   .++++|+++|+++|++||+|++|. ++...+....++.     +.|  +++.|+||++  +|+|.
T Consensus       165 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~  243 (391)
T 3dzz_A          165 VFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHG-DLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHA  243 (391)
T ss_dssp             EEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCC
T ss_pred             EEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccc-cccCCCCCceehhhcCccccCcEEEEEeChhhccccchhh
Confidence            998888886  4   468899999999999999999975 3333332222221     256  8899999986  67888


Q ss_pred             eEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCEEec
Q 010008          313 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVS  390 (520)
Q Consensus       313 G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~v~~  390 (520)
                      |+++++++     ++.+.+..........+++...+++...+++.. ....++..+++.++++.+.+.|.+.  |+.+..
T Consensus       244 G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  317 (391)
T 3dzz_A          244 ACAIIPNP-----DLRARAEESFFLAGIGEPNLLAIPAAIAAYEEG-HDWLRELKQVLRDNFAYAREFLAKEVPEVKVLD  317 (391)
T ss_dssp             EEEECCSH-----HHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECC
T ss_pred             eEEEECCH-----HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEec
Confidence            99999842     666665443211111123333444444566552 2234777888889999999999884  888875


Q ss_pred             CCCCCeeEEEEecCCCCCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          391 GGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       391 ~gt~~~~~~vd~~~~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +. .+.+.++++...+.+..++.+.| ++.||.+..+...   +...++++||++.      .++++++++++.|.++++
T Consensus       318 ~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~---~~~~~~~iRis~~------~~~~~i~~~l~~l~~~l~  387 (391)
T 3dzz_A          318 SN-ASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGY---RGNGHEFVRINLA------CPKELVIDGMQRLKQGVL  387 (391)
T ss_dssp             CC-BSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGG---CTTGGGEEEEECC------SCHHHHHHHHHHHHHHHH
T ss_pred             cC-ceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhh---CCCCCCEEEEEec------CCHHHHHHHHHHHHHHHH
Confidence            42 34556778765566788888888 5899999543211   1223578999865      347999999999988875


Q ss_pred             H
Q 010008          470 I  470 (520)
Q Consensus       470 ~  470 (520)
                      .
T Consensus       388 ~  388 (391)
T 3dzz_A          388 N  388 (391)
T ss_dssp             T
T ss_pred             H
Confidence            3

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.95  E-value=5.3e-26  Score=233.98  Aligned_cols=342  Identities=18%  Similarity=0.176  Sum_probs=229.7

Q ss_pred             ceEecCC-CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecC-ChHHHHH
Q 010008           96 LELIASE-NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPL-SGSPANF  173 (520)
Q Consensus        96 i~Liase-n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~-sGs~A~~  173 (520)
                      +.|..++ .++++.|++++...+.+.|.  .|...+..+.... ......++++++++|+++++    |.++ +|++|+.
T Consensus         3 ~yld~~~~~~~~~~v~~a~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~l~~~la~~~g~~~~~----v~~~~g~t~a~~   75 (384)
T 1eg5_A            3 VYFDNNATTRVDDRVLEEMIVFYREKYG--NPNSAHGMGIEAN-LHMEKAREKVAKVLGVSPSE----IFFTSCATESIN   75 (384)
T ss_dssp             EECBTTTCCCCCHHHHHHHHHHHHTCCC--CTTCSSHHHHHHH-HHHHHHHHHHHHHHTSCGGG----EEEESCHHHHHH
T ss_pred             EEEecCccCCCCHHHHHHHHHHHHhcCC--CCccccHHHHHHH-HHHHHHHHHHHHHcCCCCCe----EEEECCHHHHHH
Confidence            3454444 46899999999998876552  2322121111112 22234568899999988652    3344 4569999


Q ss_pred             HHHHhhC----CCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 010008          174 EVYTAIL----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  249 (520)
Q Consensus       174 ~~l~all----~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~  249 (520)
                      +++.++.    +|||+|+++++.|.++....     ..+...|.  +++.++++ +++.+|+++|++++++ ++++|+++
T Consensus        76 ~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~-----~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~  146 (384)
T 1eg5_A           76 WILKTVAETFEKRKRTIITTPIEHKAVLETM-----KYLSMKGF--KVKYVPVD-SRGVVKLEELEKLVDE-DTFLVSIM  146 (384)
T ss_dssp             HHHHHHHHHTTTTCCEEEECTTSCHHHHHHH-----HHHHHTTC--EEEECCBC-TTSCBCHHHHHHHCCT-TEEEEEEE
T ss_pred             HHHHhhhhhccCCCCEEEECCCCchHHHHHH-----HHHHhcCC--EEEEEccC-CCCccCHHHHHHHhCC-CCeEEEEE
Confidence            9999987    89999999998775442111     01123454  67777776 4678999999999987 89999999


Q ss_pred             CCCCCC--CCCHHHHHHHHHHhC--CEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcch
Q 010008          250 ASAYPR--DFDYPRMRQIADAVG--ALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLG  324 (520)
Q Consensus       250 ~s~~p~--~~d~~~i~~ia~~~g--~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~  324 (520)
                      .++||+  ..|+++|.++|+++|  ++||+|++|..|....+...  + ++|++++|+||++ ||.| |+++++++    
T Consensus       147 ~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~--~-~~di~~~s~sK~~-g~~G~G~~~~~~~----  218 (384)
T 1eg5_A          147 AANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEK--L-EVDYASFSAHKFH-GPKGVGITYIRKG----  218 (384)
T ss_dssp             SBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTT--T-CCSEEEEEGGGGT-SCTTCEEEEECTT----
T ss_pred             CCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCcccCchh--c-CCCEEEecHHHhc-CCCceEEEEEcCC----
Confidence            888875  789999999999999  99999999875533211110  1 5899999999985 6665 99999883    


Q ss_pred             hhH--HHhhcccC--CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCC--CCCeeE
Q 010008          325 VEL--ESAINNAV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG--SDNHLV  398 (520)
Q Consensus       325 ~~l--~~~i~~~~--~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~g--t~~~~~  398 (520)
                        +  ...+....  .....++++...++++..+++... .++++..+++.++++.+.+.|.+.|++++.+.  ....++
T Consensus       219 --~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~  295 (384)
T 1eg5_A          219 --VPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAV-EELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTL  295 (384)
T ss_dssp             --SCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEE
T ss_pred             --CccccccccCcccccccCCCCChHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCCCeEEeCCcccCCCCEE
Confidence              3  11111100  011234566666766666777643 35678888999999999999988888886542  112334


Q ss_pred             EEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCC----------C----CCCCEEEEccCCccccCCCHHHHHHHHHHH
Q 010008          399 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKS----------A----LVPGGIRIGSPAMTTRGFSEKEFVAIADFI  464 (520)
Q Consensus       399 ~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~----------~----~~~~giRig~~~~tt~g~~~~d~~~la~~i  464 (520)
                      .+.+.  +.+..++.+.|.+.||.+..+...+...          .    ...+++||++...+    +++|++++++.|
T Consensus       296 ~~~~~--~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~----~~~~i~~~~~~l  369 (384)
T 1eg5_A          296 SVSFP--NIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYN----TEEEVDYFLKKI  369 (384)
T ss_dssp             EEECT--TCCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTC----CHHHHHHHHHHH
T ss_pred             EEEeC--CCCHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCC----CHHHHHHHHHHH
Confidence            44443  4577888888999999996432110000          0    01368999976433    489999999999


Q ss_pred             HHHHHH
Q 010008          465 HEGVEI  470 (520)
Q Consensus       465 ~~~l~~  470 (520)
                      +++++.
T Consensus       370 ~~~~~~  375 (384)
T 1eg5_A          370 EEILSF  375 (384)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.95  E-value=2.1e-26  Score=236.95  Aligned_cols=331  Identities=14%  Similarity=0.150  Sum_probs=230.1

Q ss_pred             CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecC-ChHHHHHHHHHhhC-
Q 010008          103 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPL-SGSPANFEVYTAIL-  180 (520)
Q Consensus       103 n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~-sGs~A~~~~l~all-  180 (520)
                      .++++.|++++...+.+.+  +.|+..|..+.... ......++++++++|++++    +|..+ +|++|+.+++.++. 
T Consensus        10 ~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~l~~~la~~~g~~~~----~v~~~~g~t~a~~~~~~~l~~   82 (382)
T 4eb5_A           10 KPVDERILEAMLPYMTESF--GNPSSVHSYGFKAR-EAVQEAREKVAKLVNGGGG----TVVFTSGATEANNLAIIGYAM   82 (382)
T ss_dssp             CCCCHHHHHHHHHHHHTSC--CCTTCSSHHHHHHH-HHHHHHHHHHHHHHTCTTE----EEEEESSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhcc--CCCCCCcHHHHHHH-HHHHHHHHHHHHHhCCCCC----eEEEcCchHHHHHHHHHHHHh
Confidence            4789999999998887543  44443343222222 2333466889999999864    33344 55699999999987 


Q ss_pred             ---CCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--
Q 010008          181 ---KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--  255 (520)
Q Consensus       181 ---~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--  255 (520)
                         +|||+|+++++.|.+.....     ..+...|.  +++.++++ +++.+|+++|++++++ ++++|++++++||+  
T Consensus        83 ~~~~~gd~Vl~~~~~~~~~~~~~-----~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~  153 (382)
T 4eb5_A           83 RNARKGKHILVSAVEHMSVINPA-----KFLQKQGF--EVEYIPVG-KYGEVDVSFIDQKLRD-DTILVSVQHANNEIGT  153 (382)
T ss_dssp             HHGGGCCEEEEETTCCHHHHHHH-----HHHTTTTC--EEEEECBC-TTSCBCHHHHHHHCCT-TEEEEECCSBCTTTCB
T ss_pred             hccCCCCEEEECCCcchHHHHHH-----HHHHhCCc--EEEEeccC-CCCccCHHHHHHHhcC-CCeEEEEeccCCCccc
Confidence               89999999998875442111     01112354  67777776 4678999999999987 89999998888876  


Q ss_pred             CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhc
Q 010008          256 DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAIN  332 (520)
Q Consensus       256 ~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~  332 (520)
                      ..|+++|.++|+++|++ |+|++|..|...     .++.  ++|++++|+||+ .||.| |+++++++      .  .+.
T Consensus       154 ~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~-----~~~~~~~~di~~~s~sK~-~g~~g~G~~~~~~~------~--~l~  218 (382)
T 4eb5_A          154 IQPVEEISEVLAGKAAL-HIDATASVGQIE-----VDVEKIGADMLTISSNDI-YGPKGVGALWIRKE------A--KLQ  218 (382)
T ss_dssp             BCCHHHHHHHHTTSSEE-EEECTTTBTTBC-----CCHHHHTCSEEEEETGGG-TCCSSCEEEEEETT------C--CCC
T ss_pred             cCCHHHHHHHHHHCCCE-EEEcchhcCCcc-----cCccccCCCEEEeehHHh-cCCCceEEEEEccc------c--ccC
Confidence            78999999999999999 999998765332     1122  579999999997 56765 99999874      1  122


Q ss_pred             ccCC------CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCC--CCeeEEEEec
Q 010008          333 NAVF------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGS--DNHLVLVDLR  403 (520)
Q Consensus       333 ~~~~------p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt--~~~~~~vd~~  403 (520)
                      ....      ....++++...++++..+++.+. .++++..+++.++++.+.+.|.+. |+++..+..  ..+++++.+.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~  297 (382)
T 4eb5_A          219 PVILGGGQENGLRSGSENVPSIVGFGKAAEITA-MEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFS  297 (382)
T ss_dssp             CSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEET
T ss_pred             ceecCCCccccccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeC
Confidence            1111      11235667777777777777654 356778888999999999999875 887765321  1345566654


Q ss_pred             CCCCCHHHHHHHHhhcCeEEcCCCC--CCCC---------C---CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          404 PMGIDGARVEKILDMASITLNKNSV--PGDK---------S---ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       404 ~~g~~~~~~~~~L~~~gI~v~~~~~--Pg~~---------~---~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                        +.+..++.+.|.+.||.+..+..  ++..         +   ...++.+||++...+    +++|++++++.|+++++
T Consensus       298 --~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~----~~~~i~~~~~~l~~~~~  371 (382)
T 4eb5_A          298 --YIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYN----TDEDVDRLLEVLPGVIE  371 (382)
T ss_dssp             --TSCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTC----CHHHHHHHHHHHHHHHH
T ss_pred             --CcCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCC----CHHHHHHHHHHHHHHHH
Confidence              45778888888899999865321  1000         0   012478999976443    48999999999999886


Q ss_pred             HH
Q 010008          470 IT  471 (520)
Q Consensus       470 ~~  471 (520)
                      ..
T Consensus       372 ~~  373 (382)
T 4eb5_A          372 RL  373 (382)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.95  E-value=1.2e-25  Score=241.61  Aligned_cols=340  Identities=13%  Similarity=0.029  Sum_probs=238.5

Q ss_pred             CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCceeeecCChHHHHHHHHHhhC
Q 010008          103 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGSPANFEVYTAIL  180 (520)
Q Consensus       103 n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~sGs~A~~~~l~all  180 (520)
                      .++++.+.+++.+.+...+.  .     +...+...++|+.+++++++++|++  +++....+.+++|++||+.++.++.
T Consensus        66 ~~~~~~v~~~l~~~~~~~~~--~-----~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~  138 (502)
T 3hbx_A           66 TWMEPECDKLIMSSINKNYV--D-----MDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFK  138 (502)
T ss_dssp             CCCCHHHHHHHHHTTTCBTT--C-----TTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhccCCC--C-----hhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHH
Confidence            45789999999988765432  1     1223446789999999999999998  5444333445677799999888876


Q ss_pred             CC--------CC-----EEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 010008          181 KP--------HD-----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII  247 (520)
Q Consensus       181 ~p--------GD-----~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi  247 (520)
                      ++        ||     +|++.++.|.+..        +.+...|.  +++.++++++++.+|+++|++++++ +|++|+
T Consensus       139 ~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~--------~~~~~~G~--~~~~v~~~~~~~~~d~~~l~~~i~~-~t~~v~  207 (502)
T 3hbx_A          139 RKWQNKRKAEGKPVDKPNIVTGANVQVCWE--------KFARYFEV--ELKEVKLSEGYYVMDPQQAVDMVDE-NTICVA  207 (502)
T ss_dssp             HHHHHHHHHTTCCCSCCEEEEETTCCHHHH--------HHHHHTTC--EEEEECCBTTBCSCCHHHHHHHCCT-TEEEEE
T ss_pred             HHHhHHHHhcCCCCCCcEEEEcCCchHHHH--------HHHHHcCc--eeEEEecCCCcCcCCHHHHHHHHhh-CCEEEE
Confidence            55        87     8998887654321        23345565  5666667754589999999999988 899998


Q ss_pred             EcCCCCCC--CCCHHHHHHHHHHh------CCEEEEechhhccccc--ccccCCC--CCcccEEEeccCcccCCCCc-eE
Q 010008          248 AGASAYPR--DFDYPRMRQIADAV------GALLMMDMAHISGLVA--ASVVADP--FKYCDVVTTTTHKSLRGPRG-GM  314 (520)
Q Consensus       248 ~~~s~~p~--~~d~~~i~~ia~~~------g~~li~D~Ah~~gli~--~~~~~~p--~~~aDiv~~S~hK~l~Gprg-G~  314 (520)
                      +..++|++  ..|+++|.++|+++      |++|++|+||..+...  .+..+..  ..++|++++++||++.+|.| |+
T Consensus       208 ~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~  287 (502)
T 3hbx_A          208 AILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGW  287 (502)
T ss_dssp             EEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEE
T ss_pred             EecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeEE
Confidence            88777765  78999999999999      9999999998644321  1211222  23799999999999977666 88


Q ss_pred             EEeeCCCcchhhHH-Hhhcc--cCC------CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCC
Q 010008          315 IFFKKDPVLGVELE-SAINN--AVF------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG  385 (520)
Q Consensus       315 I~~~~~~~~~~~l~-~~i~~--~~~------p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G  385 (520)
                      ++++++     +.. +.+..  ...      ..+.++.....++++..++..+...++.++.++..+++++|.+.|.+.|
T Consensus       288 ~~~~~~-----~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~  362 (502)
T 3hbx_A          288 VIWRNK-----EDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTE  362 (502)
T ss_dssp             EEESSG-----GGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             EEEeCH-----HHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            888763     222 11110  100      1112344444556666677765556778889999999999999999865


Q ss_pred             -CEEecCCCCCeeEEEEecC-CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHH
Q 010008          386 -YKLVSGGSDNHLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF  463 (520)
Q Consensus       386 -~~v~~~gt~~~~~~vd~~~-~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~  463 (520)
                       ++++.++...+++.+.+.. .+++...+.+.|.+.||.+.....|..  ......+||++...    .+++|++.+.+.
T Consensus       363 ~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~--~~~~~~lRisv~~~----~t~edid~li~~  436 (502)
T 3hbx_A          363 RFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPN--AQHITVLRVVIRED----FSRTLAERLVID  436 (502)
T ss_dssp             CEEECSCSSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTT--CTTCEEEEEECCTT----CCHHHHHHHHHH
T ss_pred             CEEEEeCCCCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcc--cCCceEEEEEeCCC----CCHHHHHHHHHH
Confidence             8887652345566666653 235667899999999999754333322  12346799997654    458999999999


Q ss_pred             HHHHHHHH
Q 010008          464 IHEGVEIT  471 (520)
Q Consensus       464 i~~~l~~~  471 (520)
                      |+++++..
T Consensus       437 L~~~l~~l  444 (502)
T 3hbx_A          437 IEKVMREL  444 (502)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988754

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.95  E-value=3.8e-26  Score=238.95  Aligned_cols=348  Identities=14%  Similarity=0.128  Sum_probs=235.9

Q ss_pred             hhccceEecCC-CCChHHHHHHHhhhhh--ccCCCCCCCC-CCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCC
Q 010008           92 QFKSLELIASE-NFTSRAVMEAVGSCLT--NKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS  167 (520)
Q Consensus        92 ~~~~i~Liase-n~~~~~V~ea~~s~l~--~~y~~G~p~~-ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~s  167 (520)
                      ..+.+.|..+. .++++.|++++...+.  +.|  ++|.. .|..+.. .......+++++++++|++++++   +...+
T Consensus        20 ~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~~~~~v---~~~~g   93 (423)
T 3lvm_A           20 MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTF--GNPASRSHRFGWQ-AEEAVDIARNQIADLVGADPREI---VFTSG   93 (423)
T ss_dssp             CCSSEECBTTTCCCCCHHHHHHHTTSSSTTSCC--SCTTCTTSHHHHH-HHHHHHHHHHHHHHHHTCCGGGE---EEESS
T ss_pred             cCCCEeecCCCcCCCCHHHHHHHHHHHhhcccc--cCCCccccchhHH-HHHHHHHHHHHHHHHcCCCCCeE---EEeCC
Confidence            34667776544 4789999999998887  554  44543 2222222 23334456689999999987532   23345


Q ss_pred             hHHHHHHHHHhhCC----CCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCC
Q 010008          168 GSPANFEVYTAILK----PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRP  243 (520)
Q Consensus       168 Gs~A~~~~l~all~----pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~p  243 (520)
                      |++|+.+++.++++    |||+|+++++.|.+......     .+...|.  +++.+++++ ++.+|+++|++++++ ++
T Consensus        94 gt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~i~~-~~  164 (423)
T 3lvm_A           94 ATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCR-----QLEREGF--EVTYLAPQR-NGIIDLKELEAAMRD-DT  164 (423)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHH-----HHHHTTC--EEEEECCCT-TSCCCHHHHHHHCCT-TE
T ss_pred             hHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHH-----HHHHcCC--EEEEeccCC-CCccCHHHHHHhcCC-Cc
Confidence            56999999988874    89999999988765421110     1122354  666777763 688999999999987 89


Q ss_pred             cEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCceEEEeeCCC
Q 010008          244 KLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDP  321 (520)
Q Consensus       244 klIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~GprgG~I~~~~~~  321 (520)
                      ++|+++.++||+  ..|+++|+++|+++|++||+|++|..|....+...   .++|++++|+||++.++..|+++++++ 
T Consensus       165 ~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~---~~~di~~~s~sK~~g~~g~G~~~~~~~-  240 (423)
T 3lvm_A          165 ILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQ---LKVDLMSFSGHKIYGPKGIGALYVRRK-  240 (423)
T ss_dssp             EEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTT---SCCSEEEEESTTTTSCSSCEEEEECBT-
T ss_pred             EEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhh---cCCCEEEechHHhcCCCCeEEEEEecc-
Confidence            999998888776  78999999999999999999999876644221111   157999999999654333599999873 


Q ss_pred             cchhhHHHhhcccCC------CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCC-
Q 010008          322 VLGVELESAINNAVF------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGS-  393 (520)
Q Consensus       322 ~~~~~l~~~i~~~~~------p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt-  393 (520)
                           ....+.....      ....++++...++++..+++.+. ..+++..+++.++++.+.+.|.+. |+.+..+.. 
T Consensus       241 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  314 (423)
T 3lvm_A          241 -----PRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAK-EEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEH  314 (423)
T ss_dssp             -----TBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTT
T ss_pred             -----ccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccc
Confidence                 3333433222      12245667777777777777654 236778888999999999999875 888875421 


Q ss_pred             -CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCC--CCCCC------------CCCCCEEEEccCCccccCCCHHHHH
Q 010008          394 -DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSV--PGDKS------------ALVPGGIRIGSPAMTTRGFSEKEFV  458 (520)
Q Consensus       394 -~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~--Pg~~~------------~~~~~giRig~~~~tt~g~~~~d~~  458 (520)
                       ..+++.+.+  .+.+..++.+.|.+  |.+..+..  |+...            ...++.|||+++..    .+++|++
T Consensus       315 ~~~~~~~~~~--~~~~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~----~t~e~i~  386 (423)
T 3lvm_A          315 GAPNILNVSF--NYVEGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRF----TTEEEID  386 (423)
T ss_dssp             BCTTEEEEEE--TTSCHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTT----CCHHHHH
T ss_pred             cCCCeEEEEe--CCCCHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCC----CCHHHHH
Confidence             123444444  35577888888877  77654321  10000            00137899997644    4589999


Q ss_pred             HHHHHHHHHHHHHH
Q 010008          459 AIADFIHEGVEITL  472 (520)
Q Consensus       459 ~la~~i~~~l~~~~  472 (520)
                      ++++.|+++++...
T Consensus       387 ~~~~~l~~~~~~~~  400 (423)
T 3lvm_A          387 YTIELVRKSIGRLR  400 (423)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999987653

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.95  E-value=2e-26  Score=239.56  Aligned_cols=334  Identities=17%  Similarity=0.198  Sum_probs=232.4

Q ss_pred             ccceEecCCCC---ChHHHHHHHhhhhhccCCCCCCCCCCCCc-chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH
Q 010008           94 KSLELIASENF---TSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS  169 (520)
Q Consensus        94 ~~i~Liasen~---~~~~V~ea~~s~l~~~y~~G~p~~ryy~g-~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs  169 (520)
                      ..|++..+...   .++.|++++...+.. |..++.+.+|..| .+..+++    ++.+++++|++ +    +|.+++|+
T Consensus        46 ~~id~~~~~~~g~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l----~~~la~~~g~~-~----~i~~~sGs  115 (401)
T 1fc4_A           46 HVINFCANNYLGLANHPDLIAAAKAGMDS-HGFGMASVRFICGTQDSHKEL----EQKLAAFLGME-D----AILYSSCF  115 (401)
T ss_dssp             EEEECCCSCTTSCTTCHHHHHHHHHHHHH-HCSCCCSCHHHHCCBHHHHHH----HHHHHHHHTCS-E----EEEESCHH
T ss_pred             cEEEeeccCcccccCCHHHHHHHHHHHHH-hCCCCCCCCcccCCcHHHHHH----HHHHHHHhCCC-c----EEEeCChH
Confidence            34677666322   379999999888753 4344443344322 3334444    47788899987 3    46679999


Q ss_pred             HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc-----CCc
Q 010008          170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPK  244 (520)
Q Consensus       170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~-----~pk  244 (520)
                      +|+..++.++++|||+|++.++.|++++.        .+...|.  +++.++      .+|++++++++++.     +++
T Consensus       116 ~a~~~~~~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~--~~~~~~------~~d~~~l~~~l~~~~~~~~~~~  179 (401)
T 1fc4_A          116 DANGGLFETLLGAEDAIISDALNHASIID--------GVRLCKA--KRYRYA------NNDMQELEARLKEAREAGARHV  179 (401)
T ss_dssp             HHHHTTHHHHCCTTCEEEEETTCCHHHHH--------HHHTSCS--EEEEEC------TTCHHHHHHHHHHHHHTTCSSE
T ss_pred             HHHHHHHHHHcCCCCEEEEcchhHHHHHH--------HHHHcCC--ceEEEC------CCCHHHHHHHHHHhhccCCCce
Confidence            99999999999999999999987765431        2334454  555544      25889999988753     689


Q ss_pred             EEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhccccc-cccc-C--CCC-CcccEEEeccCcccCCCCceEEEe
Q 010008          245 LIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVA-ASVV-A--DPF-KYCDVVTTTTHKSLRGPRGGMIFF  317 (520)
Q Consensus       245 lIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~-~~~~-~--~p~-~~aDiv~~S~hK~l~GprgG~I~~  317 (520)
                      +|+++.++||+  ..++++|.++|+++|+++|+|++|..|+.. .+.. +  ..+ ++.|++++|+||++.|+.||++++
T Consensus       180 ~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~gG~~~~  259 (401)
T 1fc4_A          180 LIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAA  259 (401)
T ss_dssp             EEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEE
T ss_pred             EEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCCCEEEEc
Confidence            99998888876  788999999999999999999998777763 2211 0  111 257999999999996666999999


Q ss_pred             eCCCcchhhHHHhhcccCCCC-CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCe
Q 010008          318 KKDPVLGVELESAINNAVFPG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH  396 (520)
Q Consensus       318 ~~~~~~~~~l~~~i~~~~~p~-~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~  396 (520)
                      ++      ++.+.+.....+. ..++++...++++..+++....  .++..+++.++++.+.+.|.+.|+++..  ...+
T Consensus       260 ~~------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~  329 (401)
T 1fc4_A          260 RK------EVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEA--GSELRDRLWANARQFREQMSAAGFTLAG--ADHA  329 (401)
T ss_dssp             CH------HHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTTCCBCC--SSSS
T ss_pred             CH------HHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCcccC--CCCC
Confidence            87      6666665432111 1234455555555557776532  3677888999999999999988888763  2456


Q ss_pred             eEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          397 LVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       397 ~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      ++++++.. +.+..++.+.|.+.||.+.....|+.  +...+++||+++..+    +++|++++++.|.++++.
T Consensus       330 ~~~~~~~~-~~~~~~l~~~l~~~gi~v~~~~~~~~--~~~~~~iRi~~~~~~----~~~~i~~~~~~l~~~~~~  396 (401)
T 1fc4_A          330 IIPVMLGD-AVVAQKFARELQKEGIYVTGFFYPVV--PKGQARIRTQMSAAH----TPEQITRAVEAFTRIGKQ  396 (401)
T ss_dssp             EEEEEEEC-HHHHHHHHHHHHHTTEECCEECTTSS--CTTCEEEEEECCTTC----CHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCC-hHHHHHHHHHHHHCCcEEeeecCCCC--CCCCceEEEEeCCCC----CHHHHHHHHHHHHHHHHH
Confidence            67777742 23456677888888999965433321  112467999976443    489999999999988753

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.95  E-value=2.2e-26  Score=237.79  Aligned_cols=334  Identities=14%  Similarity=0.124  Sum_probs=232.7

Q ss_pred             hccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC--CCCCCCceeeecCCh
Q 010008           93 FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSG  168 (520)
Q Consensus        93 ~~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg--~~~~~~~~~V~~~sG  168 (520)
                      .+.|+|..+++  +.++.|++++...+.+.. .+|+.     +   .+++++..++++++++|  ++++    +|.+++|
T Consensus        32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~-----~---~~~~~~~l~~~l~~~~g~~~~~~----~v~~~~g   98 (391)
T 4dq6_A           32 NDLLPMWVADMDFKAAPCIIDSLKNRLEQEI-YGYTT-----R---PDSYNESIVNWLYRRHNWKIKSE----WLIYSPG   98 (391)
T ss_dssp             SCSEECCSSSCSSCCCHHHHHHHHHHHTTCC-CCCBC-----C---CHHHHHHHHHHHHHHHCCCCCGG----GEEEESC
T ss_pred             CCceeccccCCCCCCCHHHHHHHHHHHhCCC-CCCCC-----C---CHHHHHHHHHHHHHHhCCCCcHH----HeEEcCC
Confidence            46688887776  367999999998876421 23321     1   14556666789999999  5554    3444555


Q ss_pred             H-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccC-C--CCCCCCHHHHHHHhhhcCCc
Q 010008          169 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-E--STGLVDYDMLEKTAILFRPK  244 (520)
Q Consensus       169 s-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d-~--~~~~iD~d~le~~i~~~~pk  244 (520)
                      + +|+.+++.++++|||+|++.++.|.++..        .+...|.  +++.++++ .  .++.+|++++++++++  ++
T Consensus        99 ~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~  166 (391)
T 4dq6_A           99 VIPAISLLINELTKANDKIMIQEPVYSPFNS--------VVKNNNR--ELIISPLQKLENGNYIMDYEDIENKIKD--VK  166 (391)
T ss_dssp             HHHHHHHHHHHHSCTTCEEEECSSCCTHHHH--------HHHHTTC--EEEECCCEECTTSCEECCHHHHHHHCTT--EE
T ss_pred             hHHHHHHHHHHhCCCCCEEEEcCCCCHHHHH--------HHHHcCC--eEEeeeeeecCCCceEeeHHHHHHHhhc--CC
Confidence            5 99999999999999999999988765421        2234454  66677765 2  2356999999999977  89


Q ss_pred             EEEEcCCCCCC--C---CCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--ccc-----EEEeccCccc--CCC
Q 010008          245 LIIAGASAYPR--D---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCD-----VVTTTTHKSL--RGP  310 (520)
Q Consensus       245 lIi~~~s~~p~--~---~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aD-----iv~~S~hK~l--~Gp  310 (520)
                      +|++..++||+  .   .++++|+++|+++|+++|+|++|. ++...+....++.  ..|     +++.|+||++  +|.
T Consensus       167 ~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~  245 (391)
T 4dq6_A          167 LFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHS-DIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGL  245 (391)
T ss_dssp             EEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGG
T ss_pred             EEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeecccc-ccccCCCCccCHHHcCccccCcEEEEEechhhccCccc
Confidence            99998888886  4   368899999999999999999975 4444332222332  122     8899999987  678


Q ss_pred             CceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH--CCCEE
Q 010008          311 RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE--LGYKL  388 (520)
Q Consensus       311 rgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~--~G~~v  388 (520)
                      |.|+++++++     ++.+.+.........++++...+++...+++.. ....++..+++.++++.+.+.|.+  .|+.+
T Consensus       246 r~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  319 (391)
T 4dq6_A          246 QSSYVVLPDE-----KDYKLLDDAFTRIDIKRNNCFSLVATEASYNNG-ESWLESFLEYLESNIDFAIKYINENMPKLKV  319 (391)
T ss_dssp             CCEEEECCSH-----HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred             ceEEEEeCCH-----HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCEe
Confidence            8899999863     566655443222223455555555555566652 123477788889999999999987  38888


Q ss_pred             ecCCCCCeeEEEEecCCCCCHHHHHHHHhhc-CeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          389 VSGGSDNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       389 ~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~-gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      ..+ ..+.+.|+++...+.+..++.+.|.+. ||.+..+...   +....+++||+..      .++++++++++.|.++
T Consensus       320 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~---~~~~~~~iRis~~------~~~~~i~~~l~~l~~~  389 (391)
T 4dq6_A          320 RKP-EGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSF---GIGGSGYQRINLA------CPRSMLEEALIRIKNA  389 (391)
T ss_dssp             CCC-SBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGG---CTTCTTEEEEECC------SCHHHHHHHHHHHHHH
T ss_pred             cCC-CccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhh---CCCCCCeEEEEEc------CCHHHHHHHHHHHHHH
Confidence            754 234556678764456788888888776 9999543211   1223578999865      3478999999998876


Q ss_pred             H
Q 010008          468 V  468 (520)
Q Consensus       468 l  468 (520)
                      +
T Consensus       390 l  390 (391)
T 4dq6_A          390 I  390 (391)
T ss_dssp             H
T ss_pred             h
Confidence            5

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.95  E-value=3.3e-26  Score=237.20  Aligned_cols=336  Identities=12%  Similarity=0.072  Sum_probs=224.0

Q ss_pred             hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceeeecCCh
Q 010008           93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSG  168 (520)
Q Consensus        93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V~~~sG  168 (520)
                      ++.|+|..+++.  +++.|++++...+.+.. .+|+.      .....++++...+++.+.+|.  +++    +|.+++|
T Consensus        31 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~-~~y~~------~~g~~~lr~~ia~~~~~~~g~~~~~~----~v~~t~g   99 (391)
T 3h14_A           31 RRIIHMEVGQPGTGAPRGAVEALAKSLETDA-LGYTV------ALGLPALRQRIARLYGEWYGVDLDPG----RVVITPG   99 (391)
T ss_dssp             CCCEECCCSSCSSCSCHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHHHCCCCCGG----GEEEESS
T ss_pred             CCeEEccCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC------CCChHHHHHHHHHHHHHHhCCCCCHH----HEEEecC
Confidence            467899888764  57889999988876532 23432      111245665666777777885  443    3444555


Q ss_pred             H-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEE
Q 010008          169 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       169 s-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklI  246 (520)
                      + +|+.+++.++++|||+|++.+|.|.++..        .+...|.  +++.++++++ ++.+|+++++++    ++++|
T Consensus       100 ~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~----~~~~v  165 (391)
T 3h14_A          100 SSGGFLLAFTALFDSGDRVGIGAPGYPSYRQ--------ILRALGL--VPVDLPTAPENRLQPVPADFAGL----DLAGL  165 (391)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHHTTC--EEEEEECCGGGTTSCCHHHHTTS----CCSEE
T ss_pred             hHHHHHHHHHHhcCCCCEEEEcCCCCccHHH--------HHHHcCC--EEEEeecCcccCCCCCHHHHHhc----CCeEE
Confidence            5 99999999999999999999988755421        2334455  6666666643 357899999776    78999


Q ss_pred             EEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCccc--CCCCceEEEe
Q 010008          247 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL--RGPRGGMIFF  317 (520)
Q Consensus       247 i~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l--~GprgG~I~~  317 (520)
                      +++.++||+  ..+   +++|.++|+++|+++|+|++|. ++...+.......  ..++++.|+||++  +|.|.|++++
T Consensus       166 ~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~  244 (391)
T 3h14_A          166 MVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYH-GIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWMVV  244 (391)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEEEC
T ss_pred             EECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcch-hcccCCCCcChhhcCCCEEEEEechhccCCccceeEEEEe
Confidence            998888886  555   8889999999999999999965 4443332222111  3458899999987  6788899999


Q ss_pred             eCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCee
Q 010008          318 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL  397 (520)
Q Consensus       318 ~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~  397 (520)
                      ++      ++.+.+........ .+++....++...+++  .....++..+++.++++.+.+.|.+.|+..+..+..+.+
T Consensus       245 ~~------~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  315 (391)
T 3h14_A          245 PE------DQVRVVERIAQNMF-ICAPHASQVAALAALD--CDAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAFY  315 (391)
T ss_dssp             CG------GGHHHHHHHHHHTT-CCCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCBTTE
T ss_pred             CH------HHHHHHHHHHhhhc-cCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCeeEE
Confidence            87      56555543322222 2333334333333454  223457778888899999999998877655433334566


Q ss_pred             EEEEecCCCCCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          398 VLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       398 ~~vd~~~~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      +++++...+.+..++.+.| +++||.+..+..++.  ...++++||+...      +++|+++.++.|.++++..
T Consensus       316 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~~~~iRis~~~------~~~~i~~~l~~l~~~~~~~  382 (391)
T 3h14_A          316 VYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDP--ERGAGTLRFSYAR------ATADIEEGLDRLEAFMQAR  382 (391)
T ss_dssp             EEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCT--TTGGGEEEEECCS------CHHHHHHHHHHHHHHHHHC
T ss_pred             EEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCC--CCCCCeEEEEecC------CHHHHHHHHHHHHHHHHHh
Confidence            7778765456777776664 557999964332221  1235789998653      4799999999999888754

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.95  E-value=5.7e-26  Score=233.26  Aligned_cols=320  Identities=14%  Similarity=0.096  Sum_probs=227.2

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC-CCCCCceeeecCChH-
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQPLSGS-  169 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~-~~~~~~~~V~~~sGs-  169 (520)
                      +.|+|..++|+  +++.|++++...+.+....+|+.       ....+++    +++++++|+ +++    +|.+++|+ 
T Consensus        31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-------~~~~~l~----~~la~~~g~~~~~----~i~~~~g~t   95 (367)
T 3euc_A           31 GLVKLDAMENPYRLPPALRSELAARLGEVALNRYPV-------PSSEALR----AKLKEVMQVPAGM----EVLLGNGSD   95 (367)
T ss_dssp             TCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCC-------CCHHHHH----HHHHHHHTCCTTC----EEEEEEHHH
T ss_pred             CeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC-------CcHHHHH----HHHHHHhCCCCcc----eEEEcCCHH
Confidence            56889888875  68999999988876432234443       1133444    678889998 554    45556666 


Q ss_pred             HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 010008          170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  249 (520)
Q Consensus       170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~  249 (520)
                      +|+.+++.++++|||+|++.++.|.++..        .+...|.  +++.+++++ ++.+|++++++++++.++++|+++
T Consensus        96 ~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~v~~~  164 (367)
T 3euc_A           96 EIISMLALAAARPGAKVMAPVPGFVMYAM--------SAQFAGL--EFVGVPLRA-DFTLDRGAMLAAMAEHQPAIVYLA  164 (367)
T ss_dssp             HHHHHHHHHTCCTTCEEEEEESCSCCSCH--------HHHTTTC--EEEEEECCT-TSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred             HHHHHHHHHHcCCCCEEEEcCCCHHHHHH--------HHHHcCC--eEEEecCCC-CCCCCHHHHHHHhhccCCCEEEEc
Confidence            89999999999999999999998765421        2334454  666777764 678999999999987789999999


Q ss_pred             CCCCCC--CC---CHHHHHHHHHHh--CCEEEEechhhcccccccccCCCCC--cccEEEeccCccc-CCCCceEEEeeC
Q 010008          250 ASAYPR--DF---DYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL-RGPRGGMIFFKK  319 (520)
Q Consensus       250 ~s~~p~--~~---d~~~i~~ia~~~--g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l-~GprgG~I~~~~  319 (520)
                      .++||+  ..   ++++|+++|+++  |+++|+|++|.. +...+..+ .+.  ..++++.|+||+. +|.|.|++++++
T Consensus       165 ~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~-~~~~~~~~-~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~  242 (367)
T 3euc_A          165 YPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQP-FAQESWMS-RLTDFGNLLVMRTVSKLGLAGIRLGYVAGDP  242 (367)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCC-SSSCCSGG-GGGTCTTEEEEEECCCTTSCSCCEEEEEECH
T ss_pred             CCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchh-hcccchHH-HHhhCCCEEEEecchhhcccccCceeeeeCH
Confidence            888886  43   577888889999  999999999653 33222111 111  3458889999983 567789999977


Q ss_pred             CCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCCeeE
Q 010008          320 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLV  398 (520)
Q Consensus       320 ~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~~~  398 (520)
                            ++.+.+.....++   +++....++...+++.  ...+++..+++.++++.+.+.|.+. |+.+..+  ...++
T Consensus       243 ------~~~~~~~~~~~~~---~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~--~~~~~  309 (367)
T 3euc_A          243 ------QWLEQLDKVRPPY---NVNVLTEATALFALEH--VAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPS--AANFL  309 (367)
T ss_dssp             ------HHHHHHGGGCCSS---CCCHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCC--SSSEE
T ss_pred             ------HHHHHHHHhCCCC---CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCC--CCeEE
Confidence                  6777776544322   2344455555555554  2335778888999999999999886 8886543  24456


Q ss_pred             EEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          399 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       399 ~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      ++++.    +..++.+.|.+.||.+......   .+..++++||++.       +++|++++++.|++++
T Consensus       310 ~~~~~----~~~~l~~~l~~~gi~v~~~~~~---~~~~~~~iRis~~-------~~~~i~~~~~~l~~~l  365 (367)
T 3euc_A          310 LARVP----DAAQTFDRLLARKVLIKNVSKM---HPLLANCLRVTVS-------TPEENAQFLEAFAASL  365 (367)
T ss_dssp             EEECS----CHHHHHHHHHTTTEECEECGGG---CGGGTTEEEEECC-------CHHHHHHHHHHHHHHT
T ss_pred             EEECC----CHHHHHHHHHHCCeEEEECCcc---CCCCCCEEEEecC-------CHHHHHHHHHHHHHHh
Confidence            77764    5778888899999998643211   1224679999954       4899999999998765

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.95  E-value=4.9e-26  Score=233.60  Aligned_cols=319  Identities=13%  Similarity=0.049  Sum_probs=228.7

Q ss_pred             hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-
Q 010008           93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-  169 (520)
Q Consensus        93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-  169 (520)
                      .+.|+|..++|+  +++.|++++...+...  .+||...      . .+++    +++++++|++++    +|.+++|+ 
T Consensus        30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~~~------~-~~lr----~~la~~~~~~~~----~v~~~~g~~   92 (365)
T 3get_A           30 KEVIKLASNENPFGTPPKAIECLRQNANKA--HLYPDDS------M-IELK----STLAQKYKVQNE----NIIIGAGSD   92 (365)
T ss_dssp             SCCEECSSCCCTTCSCHHHHHHHHHHGGGT--TSCCCTT------C-HHHH----HHHHHHHTCCGG----GEEEESSHH
T ss_pred             CceEEecCCCCCCCCCHHHHHHHHHHHHhh--ccCCCCC------h-HHHH----HHHHHHhCCCcc----eEEECCCHH
Confidence            467899888875  5799999999887632  3455421      1 2343    678888998775    34445555 


Q ss_pred             HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 010008          170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  249 (520)
Q Consensus       170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~  249 (520)
                      +|+.+++.++++|||+|++.+|.|.++..        .+...|.  +++.++++.+++ +|++++++++++ ++++|+++
T Consensus        93 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~-~d~~~l~~~l~~-~~~~v~~~  160 (365)
T 3get_A           93 QVIEFAIHSKLNSKNAFLQAGVTFAMYEI--------YAKQCGA--KCYKTQSITHNL-DEFKKLYETHKD-EIKLIFLC  160 (365)
T ss_dssp             HHHHHHHHHHCCTTCEEEECSSCCTHHHH--------HHHHHTC--EEEECSSSSCCH-HHHHHHHHHTTT-TEEEEEEE
T ss_pred             HHHHHHHHHHhCCCCEEEEeCCChHHHHH--------HHHHcCC--EEEEEecCCCCC-CCHHHHHHHhCC-CCCEEEEc
Confidence            99999999999999999999987754421        2233454  667777633567 999999999986 89999998


Q ss_pred             CCCCCC--CCCHHHHHHHHH--HhCCEEEEechhhcccc--cccccCCCCC-----cccEEEeccCccc--CCCCceEEE
Q 010008          250 ASAYPR--DFDYPRMRQIAD--AVGALLMMDMAHISGLV--AASVVADPFK-----YCDVVTTTTHKSL--RGPRGGMIF  316 (520)
Q Consensus       250 ~s~~p~--~~d~~~i~~ia~--~~g~~li~D~Ah~~gli--~~~~~~~p~~-----~aDiv~~S~hK~l--~GprgG~I~  316 (520)
                      .++||+  ..+.+++.++++  ++|+++++|++|..+..  ..+.....+.     ..+++++|+||++  +|+|.|+++
T Consensus       161 ~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~  240 (365)
T 3get_A          161 LPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGI  240 (365)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEE
T ss_pred             CCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEE
Confidence            888886  788888888888  67999999999764321  2111111111     2458899999996  678889999


Q ss_pred             eeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCe
Q 010008          317 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH  396 (520)
Q Consensus       317 ~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~  396 (520)
                      +++      ++.+.+.....+.   +++....+++..+++..  ...++..+++.++++.+.+.|.+.|+++..+  ...
T Consensus       241 ~~~------~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~--~~~  307 (365)
T 3get_A          241 ANA------NIISAFYKLRAPF---NVSNLALKAAVAAMDDD--EFTEKTLENNFSQMELYKEFAKKHNIKIIDS--YTN  307 (365)
T ss_dssp             ECH------HHHHHHHHHSCTT---CSCHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHHHHHTTCEECCC--SSS
T ss_pred             cCH------HHHHHHHHhcCCC---CcCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhCCCEECCC--CCe
Confidence            976      6777766543332   24555555555556531  3457788889999999999999889987654  234


Q ss_pred             eEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          397 LVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       397 ~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      ++++++...  +..++.+.|.+.||.+..+..++      ++++||++.       +++|++++++.|++++
T Consensus       308 ~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~~~~------~~~iRis~~-------~~~~i~~l~~~l~~~l  364 (365)
T 3get_A          308 FITYFFDEK--NSTDLSEKLLKKGIIIRNLKSYG------LNAIRITIG-------TSYENEKFFTEFDKIL  364 (365)
T ss_dssp             EEEEECSSS--CHHHHHHHHHTTTEECEECGGGT------CSEEEEECC-------CHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCC--CHHHHHHHHHHCCEEEEECccCC------CCEEEEEcC-------CHHHHHHHHHHHHHHh
Confidence            567777532  67888888988999995432221      679999964       4799999999998765

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.95  E-value=9.3e-26  Score=237.32  Aligned_cols=334  Identities=17%  Similarity=0.162  Sum_probs=233.8

Q ss_pred             cceEecCCC---CChHHHHHHHhhhhhccCCCCCCCCCCCCc-chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHH
Q 010008           95 SLELIASEN---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP  170 (520)
Q Consensus        95 ~i~Liasen---~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g-~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~  170 (520)
                      .|++..+++   ..++.|++++...+.. |..++++.++..| .+...+++    +++++++|++.     .+.++||++
T Consensus        66 ~id~~~~~~lg~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~G~~~~~~~l~----~~la~~~g~~~-----~i~~~sGs~  135 (427)
T 2w8t_A           66 TILLGTYNYMGMTFDPDVIAAGKEALEK-FGSGTCGSRMLNGTFHDHMEVE----QALRDFYGTTG-----AIVFSTGYM  135 (427)
T ss_dssp             EEECSCCCTTCGGGCHHHHHHHHHHHHH-HCSCCCSCTTTTCCCHHHHHHH----HHHHHHHTCSE-----EEEESCHHH
T ss_pred             EEEEECcccccCCCCHHHHHHHHHHHHH-hCCCCcccccccCCcHHHHHHH----HHHHHHhCCCc-----eEEecCcHH
Confidence            456665543   2578999999888754 3345665555545 34444554    67888899862     466799999


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc---CCcEEE
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLII  247 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~---~pklIi  247 (520)
                      ||..++.+++++||.|++..+.|++...        .+...|.  +++.++      .+|+++|++++++.   ++++|+
T Consensus       136 a~~~al~~l~~~gd~vl~~~~~h~~~~~--------~~~~~g~--~~~~~~------~~d~~~le~~l~~~~~~~~~~v~  199 (427)
T 2w8t_A          136 ANLGIISTLAGKGEYVILDADSHASIYD--------GCQQGNA--EIVRFR------HNSVEDLDKRLGRLPKEPAKLVV  199 (427)
T ss_dssp             HHHHHHHHHSCTTCEEEEETTCCHHHHH--------HHHHSCS--EEEEEC------TTCHHHHHHHHHTSCSSSCEEEE
T ss_pred             HHHHHHHHhcCCCCEEEECCcccHHHHH--------HHHHcCC--eeEEeC------CCCHHHHHHHHHhccCCCCeEEE
Confidence            9999999999999999999987765431        2334454  555544      36999999998764   688999


Q ss_pred             EcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccc-cc--cC-CCC-CcccEEEeccCcccCCCCceEEEeeCC
Q 010008          248 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAA-SV--VA-DPF-KYCDVVTTTTHKSLRGPRGGMIFFKKD  320 (520)
Q Consensus       248 ~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~-~~--~~-~p~-~~aDiv~~S~hK~l~GprgG~I~~~~~  320 (520)
                      ++.++|++  ..|+++|+++|+++|++||+|++|..|.... +.  .. ..+ +.+|++++|+||++ |++||++++++ 
T Consensus       200 ~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~-g~~gG~v~~~~-  277 (427)
T 2w8t_A          200 LEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSV-GTVGGFVVSNH-  277 (427)
T ss_dssp             EESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTT-CSCCEEEEECC-
T ss_pred             EcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhh-ccCCCEEEeCH-
Confidence            98777765  7899999999999999999999987765431 10  00 111 25799999999998 47889999987 


Q ss_pred             CcchhhHHHhhcccCCCC-CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEE
Q 010008          321 PVLGVELESAINNAVFPG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVL  399 (520)
Q Consensus       321 ~~~~~~l~~~i~~~~~p~-~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~  399 (520)
                           ++.+.+.....+. ..++++...++++..+++...  ..++..+++.++++++.+.|.+.|+++..+....++++
T Consensus       278 -----~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~  350 (427)
T 2w8t_A          278 -----PKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM--TAHEKRERLWSNARALHGGLKAMGFRLGTETCDSAIVA  350 (427)
T ss_dssp             -----TTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHHHHHHTCEESCSSCCSSEEE
T ss_pred             -----HHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCEEE
Confidence                 4555554321111 123445566666656777653  24677888999999999999888998863221345677


Q ss_pred             EEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          400 VDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       400 vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +.+.. +.+...+.+.|.+.||.+.....|+.  +...+.+||+.+..    .+++|++++++.|.++++.
T Consensus       351 ~~~~~-~~~~~~l~~~L~~~Gi~v~~~~~~~~--~~~~~~lRi~~~~~----~t~e~i~~~~~~l~~~l~~  414 (427)
T 2w8t_A          351 VMLED-QEQAAMMWQALLDGGLYVNMARPPAT--PAGTFLLRCSICAE----HTPAQIQTVLGMFQAAGRA  414 (427)
T ss_dssp             EEESS-HHHHHHHHHHHHHTTEECEEECTTTS--CTTCEEEEEECCTT----CCHHHHHHHHHHHHHHHHH
T ss_pred             EEECC-HHHHHHHHHHHHHCCeEEeeeCCCCC--CCCCeEEEEEeCCC----CCHHHHHHHHHHHHHHHHH
Confidence            77642 22345677778788999865433332  12346899997754    3589999999999998764

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.95  E-value=1.3e-25  Score=230.14  Aligned_cols=315  Identities=16%  Similarity=0.134  Sum_probs=226.1

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh-HH
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SP  170 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG-s~  170 (520)
                      +.|+|..++|+  +++.|++++...+...  .+||.       ....++    ++++++++|++++    +|.+++| ++
T Consensus        33 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~-------~~~~~l----r~~la~~~~~~~~----~v~~~~g~t~   95 (363)
T 3ffh_A           33 KITKLSSNENPLGTSKKVAAIQANSSVET--EIYPD-------GWASSL----RKEVADFYQLEEE----ELIFTAGVDE   95 (363)
T ss_dssp             CCEECSSCSCTTCCCHHHHHHHHTCBSCC--CBC-----------CHHH----HHHHHHHHTCCGG----GEEEESSHHH
T ss_pred             ceEEccCCCCCCCCCHHHHHHHHHHHHHh--hcCCC-------cchHHH----HHHHHHHhCCChh----hEEEeCCHHH
Confidence            56889888875  5899999998866432  23442       112333    4778889998875    3444555 59


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  250 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~  250 (520)
                      |+..++.++++|||+|+++++.|.++.        ..+...|.  +++.+++++ ++.+|++++++++++ ++++|+++.
T Consensus        96 a~~~~~~~~~~~gd~vl~~~~~~~~~~--------~~~~~~g~--~~~~v~~~~-~~~~d~~~l~~~i~~-~~~~v~~~~  163 (363)
T 3ffh_A           96 LIELLTRVLLDTTTNTVMATPTFVQYR--------QNALIEGA--EVREIPLLQ-DGEHDLEGMLNAIDE-KTTIVWICN  163 (363)
T ss_dssp             HHHHHHHHHCSTTCEEEEEESSCHHHH--------HHHHHHTC--EEEEEECCT-TSCCCHHHHHHHCCT-TEEEEEEES
T ss_pred             HHHHHHHHHccCCCEEEEcCCChHHHH--------HHHHHcCC--EEEEecCCC-CCCcCHHHHHHhccc-CCCEEEEeC
Confidence            999999999999999999998765432        12333454  666777764 688999999999987 899999998


Q ss_pred             CCCCC--CCCHHHHHHHHHHh--CCEEEEechhhcccccccccCCCCC-----cccEEEeccCccc--CCCCceEEEeeC
Q 010008          251 SAYPR--DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK-----YCDVVTTTTHKSL--RGPRGGMIFFKK  319 (520)
Q Consensus       251 s~~p~--~~d~~~i~~ia~~~--g~~li~D~Ah~~gli~~~~~~~p~~-----~aDiv~~S~hK~l--~GprgG~I~~~~  319 (520)
                      ++||+  ..|.+++.++++.+  |+++|+|++|.. +.. +.....+.     ..++++.|++|++  +|.|.|++++++
T Consensus       164 p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~-~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~  241 (363)
T 3ffh_A          164 PNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIE-YVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADK  241 (363)
T ss_dssp             SCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGG-GCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECH
T ss_pred             CCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHh-hcC-ccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCH
Confidence            88876  78999999999888  999999999763 232 22222221     2347889999987  577889999977


Q ss_pred             CCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecCCCCCeeE
Q 010008          320 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLV  398 (520)
Q Consensus       320 ~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~gt~~~~~  398 (520)
                            ++.+.+.....+   .+++....+++..+++..  ...++..+++.++++.+.+.|.+ .|+.+..+  ...++
T Consensus       242 ------~~~~~l~~~~~~---~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~--~~~~~  308 (363)
T 3ffh_A          242 ------EIIRQLNIVRPP---FNTTSIGQKLAIEAIKDQ--AFIGECRTSNANGIKQYEAFAKRFEKVKLYPA--NGNFV  308 (363)
T ss_dssp             ------HHHHHHHHTCCS---CCCBHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHHHHCTTCEECCC--CSSEE
T ss_pred             ------HHHHHHHHhCCC---CCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHhhCCCceECCC--CCeEE
Confidence                  677777654332   234555555555566531  34477888899999999999999 89988654  23556


Q ss_pred             EEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          399 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       399 ~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      ++++..   +..++.+.|.+.||.+..+..++     .++++||++.       +++|++++++.|+++
T Consensus       309 ~~~~~~---~~~~~~~~l~~~gi~v~~g~~~~-----~~~~iRis~~-------~~~~i~~~~~~l~~~  362 (363)
T 3ffh_A          309 LIDLGI---EAGTIFSYLEKNGYITRSGAALG-----FPTAVRITIG-------KEEDNSAVIALLEKL  362 (363)
T ss_dssp             EEECSS---CHHHHHHHHHHTTEECEETTTTT-----CTTEEEEECC-------CHHHHHHHHHHHHHH
T ss_pred             EEECCC---CHHHHHHHHHHCCeEEEeCccCC-----CCCeEEEECC-------CHHHHHHHHHHHHHh
Confidence            777753   67888888889999986433221     2679999864       479999999998875

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.95  E-value=3.6e-26  Score=235.53  Aligned_cols=331  Identities=15%  Similarity=0.103  Sum_probs=226.2

Q ss_pred             ccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC----CCCCceeeec-CCh
Q 010008           94 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD----ENKWGVNVQP-LSG  168 (520)
Q Consensus        94 ~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~----~~~~~~~V~~-~sG  168 (520)
                      +.+.+.++...+++.|++++...+.+.   ++|        ...+.. ...+++++++++..    ++    +|.. .+|
T Consensus         5 ~~~~~~p~p~~~~~~v~~a~~~~~~~~---~~~--------~~~~~~-~~~~~~l~~~~~~~~~~~~~----~v~~~~g~   68 (385)
T 2bkw_A            5 VDTLLIPGPIILSGAVQKALDVPSLGH---TSP--------EFVSIF-QRVLKNTRAVFKSAAASKSQ----PFVLAGSG   68 (385)
T ss_dssp             CCEECSSSSCCCCHHHHHTTSCCCCCT---TSH--------HHHHHH-HHHHHHHHHHTTCCGGGTCE----EEEEESCT
T ss_pred             cceeecCCCcCchHHHHHHHhcccccc---CCH--------HHHHHH-HHHHHHHHHHhCCCCCCCCc----eEEEcCch
Confidence            456778888889999999987654321   121        111122 23456777888764    33    3434 455


Q ss_pred             HHHHHHHHHhhC---CCCCEEEEcCCCCCccccccccccccccccccceEEEEEccc-CCCCCCCCHHHHHHHhhhcCCc
Q 010008          169 SPANFEVYTAIL---KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEKTAILFRPK  244 (520)
Q Consensus       169 s~A~~~~l~all---~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~-d~~~~~iD~d~le~~i~~~~pk  244 (520)
                      ++|+.+++.++.   +|||+|++++.++.    |.+.  ...+...|.  +++.+++ + +++.+|+++|++++++.+++
T Consensus        69 t~al~~~~~~~~~~~~~gd~vlv~~~~~~----~~~~--~~~~~~~g~--~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~  139 (385)
T 2bkw_A           69 TLGWDIFASNFILSKAPNKNVLVVSTGTF----SDRF--ADCLRSYGA--QVDVVRPLK-IGESVPLELITEKLSQNSYG  139 (385)
T ss_dssp             THHHHHHHHHHSCTTCSCCEEEEECSSHH----HHHH--HHHHHHTTC--EEEEECCSS-TTSCCCHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHhccCCCCCeEEEEcCCcc----hHHH--HHHHHHcCC--ceEEEecCC-CCCCCCHHHHHHHHhcCCCC
Confidence            699999999997   99999988854321    1110  012233454  6666666 5 46789999999999765799


Q ss_pred             EEEEcCCCCCC--CCCHHHHHHHHHHh--CCEEEEechhhcccccccccCCCCC--cccEEEeccCcccCCCCc-eEEEe
Q 010008          245 LIIAGASAYPR--DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFF  317 (520)
Q Consensus       245 lIi~~~s~~p~--~~d~~~i~~ia~~~--g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l~Gprg-G~I~~  317 (520)
                      +|++++++||+  ..|+++|.++|+++  |+++++|++|..|....+     +.  ++|++++|+||++.||.| |++++
T Consensus       140 ~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~-----~~~~~~d~~~~s~~K~~~~~~G~G~~~~  214 (385)
T 2bkw_A          140 AVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFE-----FDEWGVDFALTASQKAIGAPAGLSISLC  214 (385)
T ss_dssp             EEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCC-----TTTTTCSEEEEESSSTTCCCSCEEEEEE
T ss_pred             EEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCcccc-----ccccCceEEEecCccccccCCcceEEEE
Confidence            99998888775  78999999999999  999999999876643221     22  579999999999988777 99999


Q ss_pred             eCCCcchhhHHH-hhcc---------------------cCCC---CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010008          318 KKDPVLGVELES-AINN---------------------AVFP---GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVS  372 (520)
Q Consensus       318 ~~~~~~~~~l~~-~i~~---------------------~~~p---~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~  372 (520)
                      ++      ++.+ ++..                     ....   ...++++...++++..+++.+...++++..+++.+
T Consensus       215 ~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~  288 (385)
T 2bkw_A          215 SS------RFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHRE  288 (385)
T ss_dssp             CH------HHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             cH------HHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            87      4443 3310                     0000   11246677777777777876543346777888999


Q ss_pred             HHHHHHHHH-HHCCCEEecC-C---CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEc-cCC
Q 010008          373 NCRALASRL-VELGYKLVSG-G---SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIG-SPA  446 (520)
Q Consensus       373 na~~l~~~L-~~~G~~v~~~-g---t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig-~~~  446 (520)
                      +++++.+.| .+.|++++.+ +   ...+++++.+..    ..++.+.|.+.||.+..+    ......++.+||+ ++.
T Consensus       289 ~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gi~v~~g----~~~~~~~~~iRis~~~~  360 (385)
T 2bkw_A          289 MSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD----PPDVIAFLKSHGVVIAGG----IHKDIGPKYIRIGHMGV  360 (385)
T ss_dssp             HHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC----HHHHHHHHHHTTEECBCC----CCTTTGGGEEEECCCGG
T ss_pred             HHHHHHHHHHHhcCceecccCcccccCCceEEEecCC----HHHHHHHHHHCCeEEeCC----CCcccCCCEEEEEcccc
Confidence            999999999 7778888752 1   134566776642    667888888899999543    2211235789999 431


Q ss_pred             ccccCCCHHHHHHHHHHHHHHHH
Q 010008          447 MTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       447 ~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                       +....+++|++++++.|+++++
T Consensus       361 -~~~~~~~e~i~~~~~~l~~~~~  382 (385)
T 2bkw_A          361 -TACNKNLPYMKNCFDLIKLALQ  382 (385)
T ss_dssp             -GTSSTTCTHHHHHHHHHHHHTT
T ss_pred             -ccccCCHHHHHHHHHHHHHHHH
Confidence             1112457999999999988754

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.95  E-value=1.6e-25  Score=231.76  Aligned_cols=336  Identities=12%  Similarity=0.050  Sum_probs=228.3

Q ss_pred             hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-
Q 010008           93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-  169 (520)
Q Consensus        93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-  169 (520)
                      .+.|+|..+++.  .++.+.+++...+.+. ..+|+.      .....++++...+++.+.+|++.+.  -+|.+++|+ 
T Consensus        30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~------~~g~~~l~~~la~~~~~~~g~~~~~--~~v~~~~g~~  100 (388)
T 1j32_A           30 IDVCSFSAGEPDFNTPKHIVEAAKAALEQG-KTRYGP------AAGEPRLREAIAQKLQRDNGLCYGA--DNILVTNGGK  100 (388)
T ss_dssp             CCCEECCCSSCSSCCCHHHHHHHHHHHHTT-CCSCCC------TTCCHHHHHHHHHHHHHHHCCCCCG--GGEEEESHHH
T ss_pred             CCEEECCCCCCCCCCCHHHHHHHHHHHhcC-CCCCCC------CCCCHHHHHHHHHHHHHhcCCCCCh--hhEEEcCCHH
Confidence            356888877753  5789999998877542 123432      1123466666677888888864221  145556765 


Q ss_pred             HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEEEE
Q 010008          170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIA  248 (520)
Q Consensus       170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklIi~  248 (520)
                      +|+..++.++++|||+|++.++.|.++..        .+...|.  +++.++++++ ++.+|+++|++++++ ++++|++
T Consensus       101 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~  169 (388)
T 1j32_A          101 QSIFNLMLAMIEPGDEVIIPAPFWVSYPE--------MVKLAEG--TPVILPTTVETQFKVSPEQIRQAITP-KTKLLVF  169 (388)
T ss_dssp             HHHHHHHHHHCCTTCEEEEESSCCTHHHH--------HHHHTTC--EEEEECCCGGGTTCCCHHHHHHHCCT-TEEEEEE
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCCChhHHH--------HHHHcCC--EEEEecCCcccCCCCCHHHHHHhcCc-CceEEEE
Confidence            99999999999999999999998765421        2334454  5666666542 467999999999987 8999998


Q ss_pred             cCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCC---C----CcccEEEeccCccc--CCCCceE
Q 010008          249 GASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADP---F----KYCDVVTTTTHKSL--RGPRGGM  314 (520)
Q Consensus       249 ~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p---~----~~aDiv~~S~hK~l--~GprgG~  314 (520)
                      +.++||+  ..   ++++|.++|+++|+++|+|++|.. +...+....+   +    .+.|+++.|+||++  +|+|.|+
T Consensus       170 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~  248 (388)
T 1j32_A          170 NTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEK-ILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGF  248 (388)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEE
T ss_pred             eCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchh-cccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEE
Confidence            8888876  43   489999999999999999999654 3333211111   1    13679999999997  5677899


Q ss_pred             EEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCC
Q 010008          315 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGS  393 (520)
Q Consensus       315 I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt  393 (520)
                      +++++      ++.+.+......+..+.+...+.++ ..+|+.. ....++..+++.++++.+.+.|++. |+++..+. 
T Consensus       249 ~~~~~------~~~~~l~~~~~~~~~~~~~~~~~a~-~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-  319 (388)
T 1j32_A          249 LAGPV------PLVKAATKIQGHSTSNVCTFAQYGA-IAAYENS-QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPD-  319 (388)
T ss_dssp             EECCH------HHHHHHHHHHHTTTCSCCHHHHHHH-HHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCC-
T ss_pred             EEeCH------HHHHHHHHHHhhcccCCCHHHHHHH-HHHHhCC-cHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCC-
Confidence            99987      6666655433233334444333333 3355432 2335777888889999999999885 88776542 


Q ss_pred             CCeeEEEEecCCCCCHHHHHHHHh-hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          394 DNHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       394 ~~~~~~vd~~~~g~~~~~~~~~L~-~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      .+.+.++++...+.+..++.+.|. ++||.+..+...+     .++++||+..      .+++++++.++.|.++++
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-----~~~~iRis~~------~~~~~i~~~~~~l~~~l~  385 (388)
T 1j32_A          320 GAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFG-----ADDCIRLSYA------TDLDTIKRGMERLEKFLH  385 (388)
T ss_dssp             BTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGT-----CTTBEEEECC------SCHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhC-----CCCcEEEEec------CCHHHHHHHHHHHHHHHH
Confidence            344556666432456777777775 4899985432111     1578999964      358999999999988775

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.95  E-value=5.6e-26  Score=234.75  Aligned_cols=332  Identities=13%  Similarity=0.110  Sum_probs=228.3

Q ss_pred             ccceEecCCC---CChHHHHHHHhhhhhccCCCCCCCCCCC-CcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH
Q 010008           94 KSLELIASEN---FTSRAVMEAVGSCLTNKYSEGLPGKRYY-GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS  169 (520)
Q Consensus        94 ~~i~Liasen---~~~~~V~ea~~s~l~~~y~~G~p~~ryy-~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs  169 (520)
                      ..|++..+++   +.++.+++++...+.+ +..+++..+|. +..+...++    ++.+++++|++ +    .|.++||+
T Consensus        40 ~~id~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l----~~~la~~~g~~-~----~i~~~sGt  109 (384)
T 1bs0_A           40 QYLNFSSNDYLGLSHHPQIIRAWQQGAEQ-FGIGSGGSGHVSGYSVVHQAL----EEELAEWLGYS-R----ALLFISGF  109 (384)
T ss_dssp             EEEECSCCCTTSGGGCHHHHHHHHHHHHH-HCSCCCSBTTTTCCCHHHHHH----HHHHHHHHTCS-E----EEEESCHH
T ss_pred             eEEEeeccCccCCCCCHHHHHHHHHHHHH-hCCCCCCcCcccCChHHHHHH----HHHHHHHhCCC-c----EEEeCCcH
Confidence            4577777765   4689999999888754 22334444443 223334444    47788889986 2    56679999


Q ss_pred             HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc--CCcEEE
Q 010008          170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLII  247 (520)
Q Consensus       170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~--~pklIi  247 (520)
                      +|+..++.++++|||.|++.++.|++...        .+...|.  +++.++      .+|++++++.+++.  ++++|+
T Consensus       110 ~a~~~~~~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~--~~~~~~------~~d~~~l~~~l~~~~~~~~~v~  173 (384)
T 1bs0_A          110 AANQAVIAAMMAKEDRIAADRLSHASLLE--------AASLSPS--QLRRFA------HNDVTHLARLLASPCPGQQMVV  173 (384)
T ss_dssp             HHHHHHHHHHCCTTCEEEEETTCCHHHHH--------HHHTSSS--EEEEEC------TTCHHHHHHHHHSCCSSCEEEE
T ss_pred             HHHHHHHHHhCCCCcEEEEcccccHHHHH--------HHHHcCC--CEEEeC------CCCHHHHHHHHHhcCCCCeEEE
Confidence            99999999999999999999987764321        2334555  555554      25899999998763  267888


Q ss_pred             EcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhccccc-cccc-CCCC-CcccEEEeccCcccCCCCceEEEeeCCCc
Q 010008          248 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVA-ASVV-ADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPV  322 (520)
Q Consensus       248 ~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~-~~~~-~~p~-~~aDiv~~S~hK~l~GprgG~I~~~~~~~  322 (520)
                      +++++||+  ..|+++|.++|+++|+++|+|++|..|... .+.. ...+ .+.|++++|+||++. |.||++++++   
T Consensus       174 ~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~GG~~~~~~---  249 (384)
T 1bs0_A          174 TEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFG-VSGAAVLCSS---  249 (384)
T ss_dssp             EESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTS-SCCEEEEECH---
T ss_pred             EeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhh-ccCcEEEeCH---
Confidence            88888876  789999999999999999999998776532 1110 1111 147899999999985 7889999987   


Q ss_pred             chhhHHHhhcccCCCCC-CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEE
Q 010008          323 LGVELESAINNAVFPGL-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVD  401 (520)
Q Consensus       323 ~~~~l~~~i~~~~~p~~-~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd  401 (520)
                         ++.+.+.....+.. .++++...++++..+++.....+.++..+++.++++++.+.|.+.|+++..+  ..++++++
T Consensus       250 ---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~~~~~~  324 (384)
T 1bs0_A          250 ---TVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADS--CSAIQPLI  324 (384)
T ss_dssp             ---HHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECSC--CSSBCCEE
T ss_pred             ---HHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcCCcccCC--CCCEEEEE
Confidence               66665544211111 1234555555555567765422446778889999999999998888887642  34556666


Q ss_pred             ecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          402 LRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       402 ~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      +. .+.+..++.+.|.+.||.+.....|+.  +...+++||+++..    .+++|++++++.|+++
T Consensus       325 ~~-~~~~~~~l~~~l~~~gi~v~~~~~~~~--~~~~~~~Ri~~~~~----~~~~~i~~~~~~l~~~  383 (384)
T 1bs0_A          325 VG-DNSRALQLAEKLRQQGCWVTAIRPPTV--PAGTARLRLTLTAA----HEMQDIDRLLEVLHGN  383 (384)
T ss_dssp             EE-SHHHHHHHHHHHHHTTEECCEECTTSS--CTTCEEECCBCCTT----CCHHHHHHHHHHHHHH
T ss_pred             eC-CHHHHHHHHHHHHHCCcEEEeecCCCC--CCCCceEEEEEcCC----CCHHHHHHHHHHHHhh
Confidence            64 223456677888888999965443331  12346899997643    3589999999988764

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.94  E-value=2.8e-25  Score=225.07  Aligned_cols=315  Identities=18%  Similarity=0.205  Sum_probs=221.0

Q ss_pred             HHhhccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCC
Q 010008           90 ERQFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS  167 (520)
Q Consensus        90 ~~~~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~s  167 (520)
                      ...+..|+|..++|+  +++.|++++...+...  .+||.       +...+++    +.+++++|++++    +|.+++
T Consensus        13 ~~~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~--~~y~~-------~~~~~lr----~~la~~~~~~~~----~i~~t~   75 (337)
T 3p1t_A           13 RAAAQAVCLAFNENPEAVEPRVQAAIAAAAARI--NRYPF-------DAEPRVM----RKLAEHFSCPED----NLMLVR   75 (337)
T ss_dssp             -CCCCCEECSSCCCCSCCCHHHHHHHHHHGGGT--TSCCT-------THHHHHH----HHHHHHHTSCGG----GEEEES
T ss_pred             cCCCCceEeeCCCCCCCCCHHHHHHHHHhhhhh--ccCCC-------CchHHHH----HHHHHHhCcCHH----HEEEeC
Confidence            334567999999885  6899999998876532  23332       2334444    678888999875    456688


Q ss_pred             hH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEE
Q 010008          168 GS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       168 Gs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklI  246 (520)
                      |+ +++.+++.++  |||+|++.+|.|.++..        .+...|.  +++.++++ +++.+|+++++++  . ++++|
T Consensus        76 G~~~~l~~~~~~~--~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~--~-~~~~v  139 (337)
T 3p1t_A           76 GIDECFDRISAEF--SSMRFVTAWPGFDGYRA--------RIAVSGL--RHFEIGLT-DDLLLDPNDLAQV--S-RDDCV  139 (337)
T ss_dssp             HHHHHHHHHHHHS--TTSEEEEESSSCSHHHH--------HHTTSCC--EEEEECBC-TTSSBCHHHHTTC--C-TTEEE
T ss_pred             CHHHHHHHHHHhc--CCCeEEEeCCCcHHHHH--------HHHHcCC--EEEEecCC-CCCCCCHHHHHhh--c-CCCEE
Confidence            87 7888888877  99999999988765431        2334454  66777776 4578999999876  2 78999


Q ss_pred             EEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCccc--CCCCceEEEeeCCCc
Q 010008          247 IAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL--RGPRGGMIFFKKDPV  322 (520)
Q Consensus       247 i~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l--~GprgG~I~~~~~~~  322 (520)
                      ++++++||+  ..|.+++.++|+++++ +++|++|. ++...+.........++++.|+||++  +|+|.|++++++   
T Consensus       140 ~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~-~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~---  214 (337)
T 3p1t_A          140 VLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYV-DYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPS---  214 (337)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTG-GGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECCH---
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCCh-hhccccccccccCCCEEEEeeCchhccCcchheEEEEeCH---
Confidence            999998886  8899999999999997 56699965 33322211111124679999999987  588899999987   


Q ss_pred             chhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEe
Q 010008          323 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDL  402 (520)
Q Consensus       323 ~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~  402 (520)
                         ++.+.+.....+   ++++...++++..+++..  ..+.+..+++.++++.+.+.|.+.|+.+..+.  ..++++..
T Consensus       215 ---~~~~~l~~~~~~---~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--~~~~~~~~  284 (337)
T 3p1t_A          215 ---ELIAAMKRKQWF---CNVGTLDLHALEAALDND--RAREAHIAKTLAQRRRVADALRGLGYRVASSE--ANFVLVEN  284 (337)
T ss_dssp             ---HHHHHHHTTSCT---TCSCHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCS--SSEEEEEC
T ss_pred             ---HHHHHHHhhcCC---CCCCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHCcCEECCCC--CeEEEEEc
Confidence               677776654322   234444555544455421  23566777888889999999998888776542  34556554


Q ss_pred             cCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          403 RPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       403 ~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      .    ++..+.+.|.++||.+..+..++     .++++||++.       +++|++++.+.|+++.
T Consensus       285 ~----~~~~~~~~l~~~gi~v~~g~~~~-----~~~~iRis~~-------~~~~~~~l~~al~~~~  334 (337)
T 3p1t_A          285 A----AGERTLRFLRERGIQVKDAGQFG-----LHHHIRISIG-------REEDNDRLLAALAEYS  334 (337)
T ss_dssp             T----TTHHHHHHHHHTTEECEEGGGGT-----CCSEEEEECC-------CHHHHHHHHHHHHHHT
T ss_pred             C----CHHHHHHHHHHCCeEEEECccCC-----CCCeEEEecC-------CHHHHHHHHHHHHHHh
Confidence            3    35678888999999996543222     2579999864       3799999999988764

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.94  E-value=8.8e-26  Score=236.24  Aligned_cols=365  Identities=12%  Similarity=0.055  Sum_probs=242.8

Q ss_pred             hhhccccChHHHHHHHHHHHHhhccceEecCCCC--ChHHHHHHHhhhhhccC-CCCCCCCCCCCcchhHHHHHHHHHHH
Q 010008           71 DYSLGEADPEVCEIITKEKERQFKSLELIASENF--TSRAVMEAVGSCLTNKY-SEGLPGKRYYGGNEYIDELETLCQKR  147 (520)
Q Consensus        71 ~~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~--~~~~V~ea~~s~l~~~y-~~G~p~~ryy~g~~~~d~lE~~a~~~  147 (520)
                      .+++...++..+..+.+.. ...+.|+|..+++.  +++.|.+++...+.... ..+|+..   .|   ..++++...++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~---~g---~~~lr~~la~~   79 (422)
T 3fvs_A            7 ARRLDGIDYNPWVEFVKLA-SEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKT---FG---YPPLTKILASF   79 (422)
T ss_dssp             CGGGTTCCCCHHHHHHHHH-HTSCCEECCCSSCSSCCCHHHHHHHHHHHHSCGGGGSCCCT---TC---CHHHHHHHHHH
T ss_pred             HHHhhccCccHHHHHHHHh-hcCCceEeCCCCCCCCCCHHHHHHHHHHHhCCCccCCCCCC---CC---CHHHHHHHHHH
Confidence            3455666666555443322 23467888877753  78999999998876532 2344431   11   23555566678


Q ss_pred             HHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC--
Q 010008          148 ALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE--  224 (520)
Q Consensus       148 ~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~--  224 (520)
                      +.+.+|.+.+. .-+|.+++|+ +|+..++.++++|||+|++.+|.|.++..        .+...|.  +++.+++++  
T Consensus        80 ~~~~~g~~~~~-~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~  148 (422)
T 3fvs_A           80 FGELLGQEIDP-LRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEP--------MTMMAGG--RPVFVSLKPGP  148 (422)
T ss_dssp             HHHHHTCCCCH-HHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECBCCC
T ss_pred             HHHhhCCCCCC-CCcEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHH--------HHHHcCC--EEEEEeccccc
Confidence            88888865321 0145556766 99999999999999999999998765421        2234454  555666653  


Q ss_pred             ---------CCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          225 ---------STGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       225 ---------~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                               .++.+|++++++++++ ++++|+++.++||+  ..   ++++|+++|+++|+++|+|++|. ++...+..+
T Consensus       149 ~~~G~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~~~  226 (422)
T 3fvs_A          149 IQNGELGSSSNWQLDPMELAGKFTS-RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQ-WMVYDGHQH  226 (422)
T ss_dssp             CCSSSCCBGGGSBCCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTCCC
T ss_pred             ccccccccccCCCCCHHHHHhhcCC-CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccch-hhccCCCCC
Confidence                     2356899999999987 89999999888887  45   58999999999999999999965 444433222


Q ss_pred             CCCC------cccEEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHh----
Q 010008          291 DPFK------YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA----  358 (520)
Q Consensus       291 ~p~~------~aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~----  358 (520)
                      .++.      ..++++.|+||++  +|+|.|++++++      ++.+.+.........+ ++....+++..+++..    
T Consensus       227 ~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~a~~~~l~~~~~~~  299 (422)
T 3fvs_A          227 ISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPD------HIMKHLRTVHQNSVFH-CPTQSQAAVAESFEREQLLF  299 (422)
T ss_dssp             CCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCH------HHHHHHHHHHHTTTCC-CCHHHHHHHHHHHHHHHHTT
T ss_pred             CChhhcccccCcEEEEecchhccCCccceEEEEEeCH------HHHHHHHHHHhhccCC-CCcHHHHHHHHHHhhccccc
Confidence            2221      2348889999987  578889999987      6666654432222222 3344445555566541    


Q ss_pred             --cCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCC--CC----------HHH-HHHHHhhcCeEE
Q 010008          359 --QSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMG--ID----------GAR-VEKILDMASITL  423 (520)
Q Consensus       359 --~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g--~~----------~~~-~~~~L~~~gI~v  423 (520)
                        ....+++..+++.++++.+.+.|.+.|++++.+. .+.++|+++...+  .+          ..+ +..+|+++||.+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v  378 (422)
T 3fvs_A          300 RQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQ-GSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVA  378 (422)
T ss_dssp             TCTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEBCS-BSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEEC
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCC-eeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEE
Confidence              2334577888899999999999998899877653 3566777764311  11          223 445677899998


Q ss_pred             cCCCCCCCC--CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          424 NKNSVPGDK--SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       424 ~~~~~Pg~~--~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ..+...+..  .+...+.+||++..      +++++++.++.|.++++
T Consensus       379 ~~g~~f~~~~~~~~~~~~iRis~~~------~~e~i~~~l~~l~~~l~  420 (422)
T 3fvs_A          379 IPVSIFYSVPHQKHFDHYIRFCFVK------DEATLQAMDEKLRKWKV  420 (422)
T ss_dssp             EEGGGGSCHHHHTTSCSEEEEECCC------CHHHHHHHHHHHHHHHH
T ss_pred             eCcHHhcCCcCCCCCCCeEEEEecC------CHHHHHHHHHHHHHHHh
Confidence            543211110  12346899998542      58999999999988764

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.94  E-value=7.8e-26  Score=233.60  Aligned_cols=349  Identities=16%  Similarity=0.120  Sum_probs=231.8

Q ss_pred             hccccChHHHHHHHHHHHHhhccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHH
Q 010008           73 SLGEADPEVCEIITKEKERQFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALA  150 (520)
Q Consensus        73 ~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~  150 (520)
                      ++....+..+..+.+... ..+.|+|..+++.  .++.+.+++...+.+  ..+|+..      ....+++    +.+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~------~~~~~l~----~~la~   72 (381)
T 1v2d_A            6 RTEAAKESIFPRMSGLAQ-RLGAVNLGQGFPSNPPPPFLLEAVRRALGR--QDQYAPP------AGLPALR----EALAE   72 (381)
T ss_dssp             GGGGC---CHHHHHHHHH-HHTCEECCCCSCSSCCCHHHHHHHHHHTTT--SCSCCCT------TCCHHHH----HHHHH
T ss_pred             hhhhcCccHHHHHHHHHh-cCCeEEecCCCCCCCCCHHHHHHHHHHHHH--hcCCCCC------CCCHHHH----HHHHH
Confidence            344444444444433322 2467888877753  578999999887754  2233321      1123444    67778


Q ss_pred             HcCCCCCCCceeeecCC-hHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccC--CCCC
Q 010008          151 AFNLDENKWGVNVQPLS-GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD--ESTG  227 (520)
Q Consensus       151 lfg~~~~~~~~~V~~~s-Gs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d--~~~~  227 (520)
                      ++++++++    |.+++ |++|+..++.++++|||+|++.++.|.++..        .+...|.  +++.++++  ++++
T Consensus        73 ~~~~~~~~----v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~  138 (381)
T 1v2d_A           73 EFAVEPES----VVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLP--------DAFLAGA--KARLVRLDLTPEGF  138 (381)
T ss_dssp             HHTSCGGG----EEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECEEETTEE
T ss_pred             hcCCChhh----EEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEEeCCCCCccC
Confidence            89998753    33344 5599999999999999999999998865421        2334454  55666665  3457


Q ss_pred             CCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCC----CcccE
Q 010008          228 LVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF----KYCDV  298 (520)
Q Consensus       228 ~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~----~~aDi  298 (520)
                      .+|+++|++++++ ++++|+++.++||+  ..+   +++|.++|+++|+++|+|++|..+ .. +..+.++    .+.|+
T Consensus       139 ~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~-g~~~~~~~~~~~~~~~  215 (381)
T 1v2d_A          139 RLDLSALEKALTP-RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDEL-YY-GERPRRLREFAPERTF  215 (381)
T ss_dssp             ECCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTC-BS-SSCCCCHHHHCTTTEE
T ss_pred             CcCHHHHHHhcCc-CCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccc-cc-CCCCCCHHHhcCCCEE
Confidence            8999999999976 89999998888876  444   889999999999999999997543 22 2111111    25789


Q ss_pred             EEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHH
Q 010008          299 VTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-SPEFKVYQNKVVSNCR  375 (520)
Q Consensus       299 v~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~-~~~~~~~~~~i~~na~  375 (520)
                      +++|+||++  +|+|.|++++++      ++.+.+....... ..+++....+++..+|+... ...+++..+++.++++
T Consensus       216 ~~~s~sK~~~~~G~r~G~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~  288 (381)
T 1v2d_A          216 TVGSAGKRLEATGYRVGWIVGPK------EFMPRLAGMRQWT-SFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRD  288 (381)
T ss_dssp             EEEEHHHHTTCGGGCCEEEECCT------TTHHHHHHHHHHH-TSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             EEeechhhcCCcccceEEEEeCH------HHHHHHHHHHhhc-ccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            999999987  577889999987      4555443321100 11223444445555666442 3456778889999999


Q ss_pred             HHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHH
Q 010008          376 ALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK  455 (520)
Q Consensus       376 ~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~  455 (520)
                      .+.+.|.+.|+++..+. .+.++++++...  +   +.+.|+++||.+..+..++. .+..++++||++..      +++
T Consensus       289 ~l~~~L~~~g~~~~~~~-~~~~~~~~~~~~--~---~~~~l~~~gi~v~~g~~~~~-~~~~~~~iRi~~~~------~~~  355 (381)
T 1v2d_A          289 LLAGGLRAMGLRVYVPE-GTYFLMAELPGW--D---AFRLVEEARVALIPASAFYL-EDPPKDLFRFAFCK------TEE  355 (381)
T ss_dssp             HHHHHHHHTTCCEECCS-BSSEEEEECTTC--C---HHHHHHHTCEECEEGGGGCS-SSCCTTEEEEECCS------CHH
T ss_pred             HHHHHHHHCCCEecCCC-cceEEEEecChH--h---HHHHHHhCCEEEecchHhCC-CCCCCCEEEEEeCC------CHH
Confidence            99999998899887642 345667777532  2   77888999999964322211 11235789999753      579


Q ss_pred             HHHHHHHHHHHHHHHH
Q 010008          456 EFVAIADFIHEGVEIT  471 (520)
Q Consensus       456 d~~~la~~i~~~l~~~  471 (520)
                      |++++++.|.+++...
T Consensus       356 ~i~~~~~~l~~~l~~~  371 (381)
T 1v2d_A          356 ELHLALERLGRVVNSP  371 (381)
T ss_dssp             HHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            9999999999887643

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.94  E-value=6.4e-26  Score=233.84  Aligned_cols=335  Identities=15%  Similarity=0.111  Sum_probs=223.6

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      +.|+|..+++.  .++.|++++...+.+....+|+      ......++++...+++.+.+|++.+.- .+|.+++|+ +
T Consensus        26 ~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~------~~~~~~~l~~~ia~~~~~~~g~~~~~~-~~v~~~~g~~~   98 (376)
T 2dou_A           26 GLIDLSIGSTDLPPPEAPLKALAEALNDPTTYGYC------LKSCTLPFLEEAARWYEGRYGVGLDPR-REALALIGSQE   98 (376)
T ss_dssp             CCEECSSCCCCCCCCHHHHHHHHHHTTCGGGSSCC------CHHHHHHHHHHHHHHHHHHHSCCCCTT-TSEEEESSHHH
T ss_pred             CEEeccCCCCCCCCCHHHHHHHHHHHhCCCcCCCC------CCCCCHHHHHHHHHHHHHHhCCCCCCC-ccEEEcCCcHH
Confidence            56888877764  5799999998887542222332      223355666666677777779862100 034446665 8


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  250 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~  250 (520)
                      |+.+++.++++|||+|++.+|.|.++..        .+...|.  +++.+++ ++++.+|++++++.+++ ++++|+++.
T Consensus        99 a~~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~-~~~~~~d~~~l~~~l~~-~~~~v~l~~  166 (376)
T 2dou_A           99 GLAHLLLALTEPEDLLLLPEVAYPSYFG--------AARVASL--RTFLIPL-REDGLADLKAVPEGVWR-EAKVLLLNY  166 (376)
T ss_dssp             HHHHHHHHHCCTTCEEEEESSCCHHHHH--------HHHHTTC--EEEEECB-CTTSSBCGGGSCHHHHH-HEEEEEECS
T ss_pred             HHHHHHHHhcCCCCEEEECCCCcHhHHH--------HHHHcCC--EEEEeeC-CCCCCCCHHHHHHhhcc-CceEEEECC
Confidence            9999999999999999999988755421        2233454  5666666 34567999999998876 799999988


Q ss_pred             CCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-----cccEEEeccCccc--CCCCceEEEee
Q 010008          251 SAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCDVVTTTTHKSL--RGPRGGMIFFK  318 (520)
Q Consensus       251 s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-----~aDiv~~S~hK~l--~GprgG~I~~~  318 (520)
                      ++||+  ..+   +++|.++|+++|+++|+|++|..+ ...+...+.+.     ..++++.|+||++  +|+|.|+++++
T Consensus       167 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~  245 (376)
T 2dou_A          167 PNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQ-VYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGS  245 (376)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGG-BSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEEC
T ss_pred             CCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhc-ccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecC
Confidence            88886  444   678899999999999999997643 33221112121     3468899999987  57888999988


Q ss_pred             CCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeE
Q 010008          319 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLV  398 (520)
Q Consensus       319 ~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~  398 (520)
                      +      ++.+.+.....+...+. +....+++..+++.. ...+++..+++.++++.+.+.|.+. +.+..+ ..++++
T Consensus       246 ~------~~~~~l~~~~~~~~~~~-~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~-~~~~~~  315 (376)
T 2dou_A          246 E------EALARLERVKGVIDFNQ-YAGVLRMGVEALKTP-KEVVRGYARVYRERALGMAEALKGV-LSLLPP-RATMYL  315 (376)
T ss_dssp             H------HHHHHHHHHHHHHCCCS-CHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHHHHHTTT-SEECCC-CBSSEE
T ss_pred             H------HHHHHHHHHHHhcccCC-CHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHh-cCccCC-CeeEEE
Confidence            7      66666554322211222 333444444455431 1234667778888899999999877 776543 234566


Q ss_pred             EEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          399 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       399 ~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      ++++. .+.+..++.+.|.+.||.+..+...+   ...++++||++..      ++++++++.+.|.+++
T Consensus       316 ~~~~~-~~~~~~~~~~~l~~~gi~v~~g~~f~---~~~~~~~Ris~~~------~~~~i~~~l~~l~~~l  375 (376)
T 2dou_A          316 WGRLP-EGVDDLEFGLRLVERGVALAPGRGFG---PGGKGFVRIALVR------PLEELLEAAKRIREAL  375 (376)
T ss_dssp             EEECC-TTCCHHHHHHHHHHTTEECEEGGGGC---GGGTTEEEEECCS------CHHHHHHHHHHHHHTC
T ss_pred             EEECC-CCCCHHHHHHHHHHCCEEEcCchhhC---CCCCCeEEEEecC------CHHHHHHHHHHHHHHh
Confidence            77774 35567777777777799985432211   1135789999752      4789999888887654

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.94  E-value=2.7e-25  Score=230.64  Aligned_cols=327  Identities=16%  Similarity=0.107  Sum_probs=225.1

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceeeecCChH
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSGS  169 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V~~~sGs  169 (520)
                      ..|+|..+++.  .++.+++++...+... ..+|+.      .....++++...+++.+.+|+  +++    +|.+++|+
T Consensus        42 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~------~~g~~~lr~~la~~~~~~~g~~~~~~----~v~~~~g~  110 (389)
T 1o4s_A           42 DVINLTAGEPDFPTPEPVVEEAVRFLQKG-EVKYTD------PRGIYELREGIAKRIGERYKKDISPD----QVVVTNGA  110 (389)
T ss_dssp             CCEECCCSSCSSCCCHHHHHHHHHHHTTC-CCCCCC------TTCCHHHHHHHHHHHHHHHTCCCCGG----GEEEESHH
T ss_pred             CEEEccCCCCCCCCCHHHHHHHHHHHhcC-CCCCCC------CCCCHHHHHHHHHHHHHHhCCCCCHH----HEEEecCH
Confidence            56888877753  5789999998887542 123332      122356776666777777787  443    45556665


Q ss_pred             -HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEEE
Q 010008          170 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLII  247 (520)
Q Consensus       170 -~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklIi  247 (520)
                       +|+..++.++++|||+|+++++.|.++..        .+...|.  +++.++++++ ++.+|+++|++++++ ++++|+
T Consensus       111 t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~  179 (389)
T 1o4s_A          111 KQALFNAFMALLDPGDEVIVFSPVWVSYIP--------QIILAGG--TVNVVETFMSKNFQPSLEEVEGLLVG-KTKAVL  179 (389)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECCGGGTTCCCHHHHHHTCCT-TEEEEE
T ss_pred             HHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEEecCCccCCCCCHHHHHHhccc-CceEEE
Confidence             99999999999999999999998865421        2334455  5666666542 467999999999987 899999


Q ss_pred             EcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCC--C---CcccEEEeccCccc--CCCCceEE
Q 010008          248 AGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP--F---KYCDVVTTTTHKSL--RGPRGGMI  315 (520)
Q Consensus       248 ~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p--~---~~aDiv~~S~hK~l--~GprgG~I  315 (520)
                      ++.++||+  ..+   +++|.++|+++|+++|+|++|..+ ...+...+.  +   .+.|++++|+||++  +|.|.|++
T Consensus       180 ~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~-~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l  258 (389)
T 1o4s_A          180 INSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSL-VYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYL  258 (389)
T ss_dssp             EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTS-BCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEE
T ss_pred             EcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEE
Confidence            88888876  555   899999999999999999997643 332211111  1   24689999999997  56778999


Q ss_pred             EeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCC
Q 010008          316 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDN  395 (520)
Q Consensus       316 ~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~  395 (520)
                      ++++      ++.+.+......+..+.+...+.++ ..+|+    ...++..+++.++++.+.+.|.+.|+++..+ ..+
T Consensus       259 ~~~~------~~~~~l~~~~~~~~~~~~~~~~~a~-~~~l~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~  326 (389)
T 1o4s_A          259 ISSE------KVATAVSKIQSHTTSCINTVAQYAA-LKALE----VDNSYMVQTFKERKNFVVERLKKMGVKFVEP-EGA  326 (389)
T ss_dssp             ECCH------HHHHHHHHHHHHHTCSCCHHHHHHH-HHHTT----CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCC-SBS
T ss_pred             EeCH------HHHHHHHHHhhhcccCCCHHHHHHH-HHHHh----ccHHHHHHHHHHHHHHHHHHHHhcCCeeecC-Ccc
Confidence            9987      6666655432222233333333332 22332    2267778889999999999998888877643 234


Q ss_pred             eeEEEEecCCCCCHHHHHHHHh-hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          396 HLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       396 ~~~~vd~~~~g~~~~~~~~~L~-~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      .++++++.   .+..++.+.|. +.||.+..+...+     .++++||++..      +++++++..+.|.++++
T Consensus       327 ~~~~~~~~---~~~~~l~~~l~~~~gi~v~~g~~f~-----~~~~~Ris~~~------~~~~l~~~l~~l~~~l~  387 (389)
T 1o4s_A          327 FYLFFKVR---GDDVKFCERLLEEKKVALVPGSAFL-----KPGFVRLSFAT------SIERLTEALDRIEDFLN  387 (389)
T ss_dssp             SEEEEECS---SCHHHHHHHHHHHHCEECEEGGGGT-----CTTEEEEECCS------CHHHHHHHHHHHHHHHT
T ss_pred             eEEEEeCC---CCHHHHHHHHHHHCCEEEeCchhcC-----CCCeEEEEEeC------CHHHHHHHHHHHHHHHh
Confidence            55666764   46677777774 8999985432111     14689999762      57899999988887663

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.94  E-value=1.2e-25  Score=233.38  Aligned_cols=337  Identities=15%  Similarity=0.139  Sum_probs=229.2

Q ss_pred             ccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC--CCCCCCceeeecCChH
Q 010008           94 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSGS  169 (520)
Q Consensus        94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg--~~~~~~~~~V~~~sGs  169 (520)
                      +.|+|..+++  .+++.|.+++...+.+. ..+|+.     +   ..++++...+++.+.+|  ++++    +|.+++|+
T Consensus        32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~-----~---~~~l~~~la~~l~~~~g~~~~~~----~v~~t~g~   98 (399)
T 1c7n_A           32 EVVPLSVADMEFKNPPELIEGLKKYLDET-VLGYTG-----P---TEEYKKTVKKWMKDRHQWDIQTD----WIINTAGV   98 (399)
T ss_dssp             TCCCCCSSSCSSCCCHHHHHHHHHHHHHC-CCSSBC-----C---CHHHHHHHHHHHHHHHCCCCCGG----GEEEESSH
T ss_pred             CceeeeecCCCCCCCHHHHHHHHHHHhcC-CCCCCC-----C---cHHHHHHHHHHHHHHhCCCCChh----hEEEcCCH
Confidence            5678877776  35789999998887542 123332     1   34566666677777788  4444    34456665


Q ss_pred             -HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC--CCCCCHHHHHHHhhhcCCcEE
Q 010008          170 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--TGLVDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       170 -~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~--~~~iD~d~le~~i~~~~pklI  246 (520)
                       +|+.+++.++++|||+|++.+|.|.++..        .+...|.  +++.++++.+  ++.+|+++|+++++..++++|
T Consensus        99 ~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v  168 (399)
T 1c7n_A           99 VPAVFNAVREFTKPGDGVIIITPVYYPFFM--------AIKNQER--KIIECELLEKDGYYTIDFQKLEKLSKDKNNKAL  168 (399)
T ss_dssp             HHHHHHHHHHHCCTTCEEEECSSCCTHHHH--------HHHTTTC--EEEECCCEEETTEEECCHHHHHHHHTCTTEEEE
T ss_pred             HHHHHHHHHHhcCCCCEEEEcCCCcHhHHH--------HHHHcCC--EEEecccccCCCCEEEcHHHHHHHhccCCCcEE
Confidence             99999999999999999999998765421        2233454  6666666422  245999999999984489999


Q ss_pred             EEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-------cccEEEeccCccc--CCCCc
Q 010008          247 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-------YCDVVTTTTHKSL--RGPRG  312 (520)
Q Consensus       247 i~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-------~aDiv~~S~hK~l--~Gprg  312 (520)
                      +++.++||+  ..+   +++|+++|+++|++||+|++|.. +...+....++.       ..++++.|+||++  +|+|.
T Consensus       169 ~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~  247 (399)
T 1c7n_A          169 LFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFD-LIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGM  247 (399)
T ss_dssp             EEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTT-CBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCC
T ss_pred             EEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccc-cccCCCCcccHHHcCccccCcEEEEEeChhhccccchhe
Confidence            998888886  666   89999999999999999999754 333332112221       2348889999987  67788


Q ss_pred             eEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-C-CCEEec
Q 010008          313 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-L-GYKLVS  390 (520)
Q Consensus       313 G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~-G~~v~~  390 (520)
                      |+++++++     ++.+.+.....+...++++....++...+++.. ...+++..+++.++++.+.+.|.+ . |+.+..
T Consensus       248 G~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  321 (399)
T 1c7n_A          248 SNIIIKNP-----DIRERFTKSRDATSGMPFTTLGYKACEICYKEC-GKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPL  321 (399)
T ss_dssp             EEEECCCH-----HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCC
T ss_pred             EEEEECCH-----HHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEec
Confidence            99999753     566666543322223344444555555566542 233467778888999999999987 4 787654


Q ss_pred             CCCCCeeEEEEecCCCCCHHHHHHHHh-hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          391 GGSDNHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       391 ~gt~~~~~~vd~~~~g~~~~~~~~~L~-~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      + ..+.+.|+++...+.+..++.+.|. ++||.+..+...   ++..++++||++..      .+++++++++.|.++++
T Consensus       322 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~---~~~~~~~iRis~~~------~~~~l~~~l~~l~~~l~  391 (399)
T 1c7n_A          322 I-EGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIF---GDGGIGFERINLAA------PSSVIQESLERLNKALK  391 (399)
T ss_dssp             C-SBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGG---CGGGTTEEEEECCS------CHHHHHHHHHHHHHHHH
T ss_pred             C-CceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCcccc---CCCCCCeEEEEecc------CHHHHHHHHHHHHHHHH
Confidence            3 2345556787543456777777775 799998543211   11235789999753      26889999988888775


Q ss_pred             H
Q 010008          470 I  470 (520)
Q Consensus       470 ~  470 (520)
                      .
T Consensus       392 ~  392 (399)
T 1c7n_A          392 D  392 (399)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.94  E-value=6.2e-27  Score=242.91  Aligned_cols=342  Identities=15%  Similarity=0.157  Sum_probs=217.1

Q ss_pred             ccceEecCC-CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh-HHH
Q 010008           94 KSLELIASE-NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPA  171 (520)
Q Consensus        94 ~~i~Liase-n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG-s~A  171 (520)
                      +.|.|..+. .++++.|++++...+.+.+  +.|+..|..+.. ...+.+..++++++++|++++    +|.+++| ++|
T Consensus        20 ~~iyld~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~~~~----~v~~~~g~t~a   92 (400)
T 3vax_A           20 HMTYLDAAATTRVDQRVADIVLHWMTAEF--GNAGSRHEYGIR-AKRGVERAREYLASTVSAEPD----ELIFTSGATES   92 (400)
T ss_dssp             --CCCCCCCCSSSCHHHHHHHHHHHHHHH--SCSSCHHHHHHH-HHHHHHHHHHHHHHHTTCCGG----GEEEESCHHHH
T ss_pred             CcEEecCCCCCCCCHHHHHHHHHHHHhcc--CCCcccchhHHH-HHHHHHHHHHHHHHHcCCCCC----cEEEeCCHHHH
Confidence            446665444 4689999999998887554  334332222222 233334566899999999875    3334555 599


Q ss_pred             HHHHHHhhC----CCCC-EEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEE
Q 010008          172 NFEVYTAIL----KPHD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       172 ~~~~l~all----~pGD-~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklI  246 (520)
                      +.+++.+++    +||| +|++++++|.+......     .+...|.  +++.++++ +++.+|+++|++++++ ++++|
T Consensus        93 l~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~-----~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~-~~~~v  163 (400)
T 3vax_A           93 NNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLE-----HLAGRGF--EVDFLTPG-PSGRISVEGVMERLRP-DTLLV  163 (400)
T ss_dssp             HHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHH-----HHHTTTC--EEEEECCC-TTCCCCHHHHHTTCCT-TEEEE
T ss_pred             HHHHHHHHHHhhccCCCCEEEECccccHhHHHHHH-----HHHhcCC--eEEEEccC-CCCCcCHHHHHHhcCC-CceEE
Confidence            999999998    8999 99999887765432111     1112354  67777776 4688999999999987 89999


Q ss_pred             EEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEE-eeCCCc
Q 010008          247 IAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIF-FKKDPV  322 (520)
Q Consensus       247 i~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~-~~~~~~  322 (520)
                      +++.++||+  ..|+++|.++|+++|++||+|++|..|....+...    .+|++++|+|| +.||.| |+++ ++++  
T Consensus       164 ~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~----~~d~~~~s~~K-~~g~~g~g~~~~~~~~--  236 (400)
T 3vax_A          164 SLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTT----PIDMISISGHK-IGAPKGVGALVTRRRE--  236 (400)
T ss_dssp             ECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGS----CCSEEEEETGG-GTSCSSCEEEEECBCS--
T ss_pred             EEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhh----cCcEEEEeHHH-hCCCCceEEEEEecch--
Confidence            999888876  78999999999999999999999887654332211    17999999999 456765 8888 8762  


Q ss_pred             chhhHH---HhhcccCC------CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCC
Q 010008          323 LGVELE---SAINNAVF------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS  393 (520)
Q Consensus       323 ~~~~l~---~~i~~~~~------p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt  393 (520)
                         ++.   ..+.....      ....++++...++++..+++... .++++..+++.++++++.+.|...|+++..+..
T Consensus       237 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  312 (400)
T 3vax_A          237 ---EMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFE-AEHAQWQVAAQDLRSRLLAGLASTSFQVNGDQD  312 (400)
T ss_dssp             ---SSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HSHHHHHHHHHHHHHHHHHHHTTTTCEECSCTT
T ss_pred             ---hccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhhCCCCEEEeCCcc
Confidence               111   11222111      11245667777777777777654 356788889999999999999856888876422


Q ss_pred             --CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCC----------CCCCC----CCEEEEcc-CCccccCCCHHH
Q 010008          394 --DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD----------KSALV----PGGIRIGS-PAMTTRGFSEKE  456 (520)
Q Consensus       394 --~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~----------~~~~~----~~giRig~-~~~tt~g~~~~d  456 (520)
                        ..+++++.+.  +.+.+++.+.|. .||.++.+...+.          .-...    .++|||+. +..+    +++|
T Consensus       313 ~~~~~~~~~~~~--~~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~----t~e~  385 (400)
T 3vax_A          313 HVVPHILNLSFE--DVDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQA----TDLD  385 (400)
T ss_dssp             SBCTTEEEEECT--TCCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC----------
T ss_pred             cCCCCEEEEEeC--CCCHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCC----CHHH
Confidence              1234454443  567888888898 9998854321000          00011    47899997 5443    4799


Q ss_pred             HHHHHHHHHHHHH
Q 010008          457 FVAIADFIHEGVE  469 (520)
Q Consensus       457 ~~~la~~i~~~l~  469 (520)
                      ++++++.|+++++
T Consensus       386 i~~~~~~l~~~~~  398 (400)
T 3vax_A          386 VEELARGVAKLKP  398 (400)
T ss_dssp             -------------
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988764

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.94  E-value=4.1e-25  Score=232.25  Aligned_cols=341  Identities=15%  Similarity=0.126  Sum_probs=233.4

Q ss_pred             hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-
Q 010008           93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-  169 (520)
Q Consensus        93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-  169 (520)
                      .+.|+|..+++.  +++.|++++...+.+....+|+...   |   ..++++...+++.+.+|.+.+.  -+|.+++|+ 
T Consensus        44 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~---g---~~~lr~~la~~~~~~~g~~~~~--~~i~~t~g~t  115 (437)
T 3g0t_A           44 TKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPNLD---G---LPELKQEASRFAKLFVNIDIPA--RACVPTVGSM  115 (437)
T ss_dssp             CCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCTT---C---CHHHHHHHHHHHHHHHCCCCCG--GGEEEESHHH
T ss_pred             CCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCCC---C---hHHHHHHHHHHHHHhhCCCCCc--ccEEEeCCHH
Confidence            367888887764  5799999999888753324454311   1   2456656666777777754221  145556766 


Q ss_pred             HHHHHHHHhhC--CCCC--EEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcE
Q 010008          170 PANFEVYTAIL--KPHD--RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKL  245 (520)
Q Consensus       170 ~A~~~~l~all--~pGD--~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pkl  245 (520)
                      +|+.+++.+++  +|||  +|++.+|.|.++..        .+...|.  +++.++++++++.+|+++|+++++..++++
T Consensus       116 ~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~  185 (437)
T 3g0t_A          116 QGCFVSFLVANRTHKNREYGTLFIDPGFNLNKL--------QCRILGQ--KFESFDLFEYRGEKLREKLESYLQTGQFCS  185 (437)
T ss_dssp             HHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHH--------HHHHHTC--CCEEEEGGGGCTTHHHHHHHHHHTTTCCCE
T ss_pred             HHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHH--------HHHHcCC--EEEEEeecCCCCccCHHHHHHHHhcCCceE
Confidence            99999999998  9999  99999987755321        2233454  455556654566799999999994448999


Q ss_pred             EEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCC--------CC---CcccEEEeccCccc--
Q 010008          246 IIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD--------PF---KYCDVVTTTTHKSL--  307 (520)
Q Consensus       246 Ii~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~--------p~---~~aDiv~~S~hK~l--  307 (520)
                      |+++.++||+  ..+   +++|+++|+++|++||+|++|... ...+..+.        .+   ...+++++|+||++  
T Consensus       186 v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~  264 (437)
T 3g0t_A          186 IIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGM-DFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSY  264 (437)
T ss_dssp             EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTC-CTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSC
T ss_pred             EEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhc-ccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCC
Confidence            9998888886  454   778899999999999999997532 32221111        11   13458899999986  


Q ss_pred             CCCCceEEEeeCCCcchhhHHH-h-----------------hcccCCCCCCCCChHHHHHHHHHHHHHhcC--chhHHHH
Q 010008          308 RGPRGGMIFFKKDPVLGVELES-A-----------------INNAVFPGLQGGPHNHTIGGLAVCLKHAQS--PEFKVYQ  367 (520)
Q Consensus       308 ~GprgG~I~~~~~~~~~~~l~~-~-----------------i~~~~~p~~~g~p~~~~iaala~al~~~~~--~~~~~~~  367 (520)
                      +|+|.|++++++      ++.+ .                 +....... ..+++....+++..+++....  ..+++..
T Consensus       265 ~G~r~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  337 (437)
T 3g0t_A          265 AGQRIGVLMISG------KLYEREYPDLEESFGRLRFGEALSSSALYAL-SSGATHSAQWGMAAMLKACNDGEYNFRDSV  337 (437)
T ss_dssp             GGGCCEEEEECH------HHHHCBCGGGHHHHSCSBHHHHHHTTHHHHH-HSSSCHHHHHHHHHHHHHHHTTSCCHHHHH
T ss_pred             ccceeEEEEECH------HHhhhhhhcccccccccchhHHHHHHHHhhh-cCCCCHHHHHHHHHHHhCcHhHHHHHHHHH
Confidence            677889999987      5665 5                 43321111 123344445555556665421  1167888


Q ss_pred             HHHHHHHHHHHHHHHHCCCEEe------cCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEE
Q 010008          368 NKVVSNCRALASRLVELGYKLV------SGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIR  441 (520)
Q Consensus       368 ~~i~~na~~l~~~L~~~G~~v~------~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giR  441 (520)
                      +++.++++.+.+.|.+.|+++.      .+...++++++++.  +.+..++.+.|.+.||.+.....++   ...++++|
T Consensus       338 ~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~gi~v~~~~~~~---~~~~~~iR  412 (437)
T 3g0t_A          338 IEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYK--GMDSSKLIEKFVRYGMCAITLKTTG---SKRNEAMR  412 (437)
T ss_dssp             HHHHHHHHHHHHHHHTTTEEESSCEETTEECCSSSEEEEEET--TCCHHHHHHHHHHTTEECEESTTTT---CCCTTCEE
T ss_pred             HHHHHHHHHHHHHHHHcCCEEeccccCCCCCceeEEEEEecC--CCCHHHHHHHHHHcCeEEeeccccC---CCCCCEEE
Confidence            9999999999999998898887      22123566788875  6678888888888999995432222   22237899


Q ss_pred             EccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          442 IGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       442 ig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      |++...     +++|++++++.|.++++
T Consensus       413 is~~~~-----~~e~i~~~~~~l~~~~~  435 (437)
T 3g0t_A          413 ICTSLL-----PESQFPDLEKRLQMLNA  435 (437)
T ss_dssp             EECSSS-----CGGGHHHHHHHHHHHHH
T ss_pred             EEEecC-----CHHHHHHHHHHHHHHHh
Confidence            987643     47999999999988765

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.94  E-value=1.3e-25  Score=234.71  Aligned_cols=336  Identities=14%  Similarity=0.094  Sum_probs=221.9

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CC-CCCceeeecCC-
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DE-NKWGVNVQPLS-  167 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~-~~~~~~V~~~s-  167 (520)
                      +.|+|..+++.  .++.|.+++...+.+....+|+.      .....++++...+++.+.+|+  ++ +    +|.+++ 
T Consensus        38 ~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~g~~~l~~~ia~~~~~~~g~~~~~~~----~v~~t~g  107 (412)
T 2x5d_A           38 DIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHGYST------SRGIPRLRRAISHWYRDRYDVQIDPES----EAIVTIG  107 (412)
T ss_dssp             CCEECSSCCCCSCCCHHHHHHHHHTC---------C------TTCCHHHHHHHHHHHHHHHCCCCCTTT----SEEEESC
T ss_pred             CEEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC------CCCcHHHHHHHHHHHHHHhCCCCCCCc----CEEEcCC
Confidence            46888777753  57999999988775431223432      112346665666677777786  33 3    233355 


Q ss_pred             hHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEE
Q 010008          168 GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       168 Gs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklI  246 (520)
                      |++|+.+++.++++|||+|++.+|.|.++..        .+...|.  +++.++++++ ++.+|++++++++++ ++++|
T Consensus       108 ~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v  176 (412)
T 2x5d_A          108 SKEGLAHLMLATLDHGDTILVPNPSYPIHIY--------GAVIAGA--QVRSVPLVPGIDFFNELERAIRESIP-KPRMM  176 (412)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHHHTC--EEEEEECSTTSCHHHHHHHHHHTEES-CCSEE
T ss_pred             hHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEeecCCccCCCCCHHHHHHhccc-CceEE
Confidence            4599999999999999999999998765421        2233454  5666667644 334899999999986 89999


Q ss_pred             EEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCC---C---CcccEEEeccCccc--CCCCce
Q 010008          247 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP---F---KYCDVVTTTTHKSL--RGPRGG  313 (520)
Q Consensus       247 i~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p---~---~~aDiv~~S~hK~l--~GprgG  313 (520)
                      +++.++||+  ..+   +++|.++|+++|+++|+|++|..+. ..+....+   +   ...+++++|+||++  +|+|.|
T Consensus       177 ~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~-~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G  255 (412)
T 2x5d_A          177 ILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIV-YDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIG  255 (412)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCB-CTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCE
T ss_pred             EECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccc-cCCCCCCChhhccCccCcEEEEecCccccCCcccceE
Confidence            998888886  444   6889999999999999999976543 22211111   1   14578999999998  577889


Q ss_pred             EEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCC
Q 010008          314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS  393 (520)
Q Consensus       314 ~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt  393 (520)
                      ++++++      ++.+.+........ .+.+....++...+|+.. ...+++..+++.++++.+.+.|.+.|+.+..+ .
T Consensus       256 ~~~~~~------~~~~~l~~~~~~~~-~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~  326 (412)
T 2x5d_A          256 FMVGNP------ELVSALARIKSYHD-YGTFTPLQVAAIAALEGD-QQCVRDIARQYQQRRDVLVKGLREAGWMVENP-K  326 (412)
T ss_dssp             EEEECH------HHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC-S
T ss_pred             EEEcCH------HHHHHHHHHHhhhc-cCCCHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCEecCC-C
Confidence            999977      66665543221111 223334444444456532 23457778888899999999998878876543 2


Q ss_pred             CCeeEEEEecCCCC---CHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          394 DNHLVLVDLRPMGI---DGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       394 ~~~~~~vd~~~~g~---~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      .++++++++. .++   +..++.+.| +++||.+..+..++   ...++++||++..      +++++++.++.|.++++
T Consensus       327 ~g~~~~~~~~-~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~---~~~~~~iRis~~~------~~~~l~~~l~~l~~~l~  396 (412)
T 2x5d_A          327 ASMYVWAKIP-EPYAHLGSLEFAKKLLQDAKVSVSPGIGFG---DYGDDHVRFALIE------NRDRLRQAVRGIKAMFR  396 (412)
T ss_dssp             BSSEEEEECC-TTTGGGCHHHHHHHHHHHHCEECEEGGGGC---GGGTTEEEEECCS------CHHHHHHHHHHHHHHHH
T ss_pred             eeeEEEEEcC-CccCCCCHHHHHHHHHHHCCEEEeCchhhC---CCCCCeEEEEecC------CHHHHHHHHHHHHHHHH
Confidence            3456777774 344   566666666 56899995432211   1235789999763      47899999999998876


Q ss_pred             H
Q 010008          470 I  470 (520)
Q Consensus       470 ~  470 (520)
                      .
T Consensus       397 ~  397 (412)
T 2x5d_A          397 A  397 (412)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.94  E-value=3.2e-25  Score=231.46  Aligned_cols=321  Identities=15%  Similarity=0.167  Sum_probs=221.1

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCC-CCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCC
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRY-YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH  183 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ry-y~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pG  183 (520)
                      .+|.|.+++...+. +|..++.+.++ ++..+..++++    +++++++|.+.     .+.+++|++|+..++.++++||
T Consensus        74 ~~p~v~~a~~~~l~-~~~~~~~~~~~~~g~~~~~~~l~----~~la~~~g~~~-----~i~~~sGt~a~~~~l~~~~~~g  143 (409)
T 3kki_A           74 NHPLIKARLAKSLL-EEQQSLFMSASFLQNDYDKPMIE----KRLAKFTGFDE-----CLLSQSGWNANVGLLQTICQPN  143 (409)
T ss_dssp             TCHHHHHHHHHHHH-SCCCCCCSBGGGGCSTTTSCHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHHCCTT
T ss_pred             CCHHHHHHHHHHHH-HcCCCCCccccccCCcHHHHHHH----HHHHHHhCCCe-----EEEecchHHHHHHHHHHhcCCC
Confidence            47999999988875 34333333222 22223333444    67888999875     3566999999999999999999


Q ss_pred             CEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHH
Q 010008          184 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPR  261 (520)
Q Consensus       184 D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~  261 (520)
                      |.|++.++.|+++..        .+...|.  +++.++.      +|+++|++++++.++++|++++++||+  ..|+++
T Consensus       144 d~Vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~------~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~  207 (409)
T 3kki_A          144 TNVYIDFFAHMSLWE--------GARYANA--QAHPFMH------NNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAE  207 (409)
T ss_dssp             CEEEEETTSCHHHHH--------HHHHTTC--EEEEECT------TCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHH
T ss_pred             CEEEECCCcCHHHHH--------HHHHcCC--eEEEecC------CCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHH
Confidence            999999987765431        2334454  5555432      689999999987679999999888775  789999


Q ss_pred             HHHHHHHhCCEEEEechhhcccccc-cc--c-CCCC-CcccEEEeccCcccCCCCceEEEeeCCCcchhhHHHhhcccCC
Q 010008          262 MRQIADAVGALLMMDMAHISGLVAA-SV--V-ADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVF  336 (520)
Q Consensus       262 i~~ia~~~g~~li~D~Ah~~gli~~-~~--~-~~p~-~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i~~~~~  336 (520)
                      |+++|+++|++||+|++|..|.... +.  . ...+ ...|+++.|+||++.++ ||++++++      ++.+.+.....
T Consensus       208 l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~-gg~v~~~~------~~~~~~~~~~~  280 (409)
T 3kki_A          208 LVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR-AGAIWCNN------EVNRCVPFISY  280 (409)
T ss_dssp             HHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS-CEEEEESS------SGGGTHHHHCH
T ss_pred             HHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC-ceEEEECH------HHHHHHHHhCc
Confidence            9999999999999999987654321 10  0 0011 24789999999999766 89999988      44444332111


Q ss_pred             CC-CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHH
Q 010008          337 PG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKI  415 (520)
Q Consensus       337 p~-~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~  415 (520)
                      +. ..++++...+++...+++...  +.++..+++.++++++.+.|.+.|+++..   ...++++.+... .+..++.+.
T Consensus       281 ~~~~~~~~~~~~~aa~~aal~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~~---~~~~~~~~~~~~-~~~~~~~~~  354 (409)
T 3kki_A          281 PAIFSSTLLPYEAAGLETTLEIIE--SADNRRQHLDRMARKLRIGLSQLGLTIRS---ESQIIGLETGDE-RNTEKVRDY  354 (409)
T ss_dssp             HHHHSBCCCHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHTTTCCCCC---SSSEEEEEEESH-HHHHHHHHH
T ss_pred             CccccCCCcHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHcCCccCC---CCCEEEEEeCCH-HHHHHHHHH
Confidence            11 112234445555555676543  22567788889999999999988887763   345666666421 234557777


Q ss_pred             HhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          416 LDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       416 L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      |.+.||.+.....|..  +...++|||+.+..    .+++|++++++.|+++++.
T Consensus       355 L~~~Gv~v~~~~~~~~--~~~~~~iRi~~~~~----~t~e~i~~~~~~l~~~l~~  403 (409)
T 3kki_A          355 LESNGVFGSVFCRPAT--SKNKNIIRLSLNSD----VNDEQIAKIIEVCSDAVNY  403 (409)
T ss_dssp             HHHTTEECEEECTTSS--CTTCEEEEEECCTT----CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCceEeeeCCCCc--CCCCcEEEEEccCC----CCHHHHHHHHHHHHHHHhc
Confidence            8788999865433322  23467899998754    3589999999999998864

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.94  E-value=1.5e-25  Score=228.60  Aligned_cols=330  Identities=10%  Similarity=0.035  Sum_probs=226.2

Q ss_pred             ccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHH
Q 010008           94 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  173 (520)
Q Consensus        94 ~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~  173 (520)
                      +.+.+.++...+|+.|++++...+.+... ++. .+   ...+. ++.+.+++++++++|++..+.  .+.+.+|++|+.
T Consensus         4 ~~~~~~p~p~~~~~~v~~~~~~~~~~~~~-~~~-~~---~~~~~-~~~~~~~~~la~~~g~~~~~~--v~~~~g~t~al~   75 (362)
T 3ffr_A            4 NKIYFTPGPSELYPTVRQHMITALDEKIG-VIS-HR---SKKFE-EVYKTASDNLKTLLELPSNYE--VLFLASATEIWE   75 (362)
T ss_dssp             CCEEECSSSCCCCTTHHHHHHHHHHTTTT-TSC-TT---SHHHH-HHHHHHHHHHHHHTTCCTTEE--EEEESCHHHHHH
T ss_pred             cceeccCCCcCCCHHHHHHHHHHhcCCcc-CcC-CC---CHHHH-HHHHHHHHHHHHHhCCCCCcE--EEEeCCchHHHH
Confidence            35778888888999999888777765321 111 11   12222 333456789999999863221  233455669999


Q ss_pred             HHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC
Q 010008          174 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  253 (520)
Q Consensus       174 ~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~  253 (520)
                      +++.++++|  .+++..+++.++   .+.   ......|.  +++.++++ .++.+|+++++  +++ +||+|++++++|
T Consensus        76 ~~~~~l~~~--~~i~~~~~~~~~---~~~---~~~~~~g~--~~~~v~~~-~~~~~d~~~l~--~~~-~~~~v~~~~~~n  141 (362)
T 3ffr_A           76 RIIQNCVEK--KSFHCVNGSFSK---RFY---EFAGELGR--EAYKEEAA-FGKGFYPADIT--VPA-DAEIICLTHNET  141 (362)
T ss_dssp             HHHHHHCSS--EEEEEECSHHHH---HHH---HHHHHTTC--EEEEEECC-TTCCCCGGGCC--CCT-TCCEEEEESEET
T ss_pred             HHHHhccCC--cEEEEcCcHHHH---HHH---HHHHHhCC--CeEEEecC-CCCCCCHHHHh--ccC-CccEEEEEcCCC
Confidence            999999988  444444332221   110   01223354  55566665 45789999998  655 899999998888


Q ss_pred             CC--CCCHHHHHHHHHHh-CCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHH
Q 010008          254 PR--DFDYPRMRQIADAV-GALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES  329 (520)
Q Consensus       254 p~--~~d~~~i~~ia~~~-g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~  329 (520)
                      |+  ..|+++|.++|+++ |+++++|++|..|....     ++..+|++++|+||++.||.| |+++.++      ++.+
T Consensus       142 ptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~-----~~~~~d~~~~s~~K~~~~~~G~g~~~~~~------~~~~  210 (362)
T 3ffr_A          142 SSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKF-----DWTKIDSVFFSVQKCFGLPAGLGVWILND------RVIE  210 (362)
T ss_dssp             TTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCC-----CTTSCSEEEEETTSTTCCCSCCEEEEEEH------HHHH
T ss_pred             CcceeCCHHHHHHHHHhCCCCEEEEecccccCCccc-----ChhHCcEEEEecccccCCCCceEEEEECH------HHHH
Confidence            76  88999999999999 99999999987664322     222389999999999986766 8888887      4544


Q ss_pred             hhcccCC--------------------CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEE
Q 010008          330 AINNAVF--------------------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKL  388 (520)
Q Consensus       330 ~i~~~~~--------------------p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v  388 (520)
                      ++.....                    ....++++...++++..+++.+...++++..++..++++.+.+.|.+. |+++
T Consensus       211 ~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  290 (362)
T 3ffr_A          211 KSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSF  290 (362)
T ss_dssp             HHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEE
T ss_pred             HhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCcee
Confidence            4432111                    112456677777777777776544457788899999999999999986 8988


Q ss_pred             ecC-C--CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHH
Q 010008          389 VSG-G--SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  465 (520)
Q Consensus       389 ~~~-g--t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~  465 (520)
                      ..+ .  ....++++.+..   +..++.+.|.+.||.+..+..     +..+++|||++...+    +++|++++++.|+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~g~~-----~~~~~~iRis~~~~~----~~e~i~~l~~~l~  358 (362)
T 3ffr_A          291 GVEDAKLRSMTTIVANTTM---LPGEINKILEPFDMAVGAGYG-----SKKETQIRIANFPAH----SLEQVHKLVQTLK  358 (362)
T ss_dssp             SSSCGGGBCSSEEEEEESS---CHHHHHHHHGGGTEEEEECSG-----GGTTTEEEEECCTTS----CHHHHHHHHHHHH
T ss_pred             ccCChhhcCCceEEEecCC---CHHHHHHHHHHCCeEEecCcc-----ccCCCEEEEECCCCC----CHHHHHHHHHHHH
Confidence            752 1  123455666643   678888888888999964321     224578999987543    4899999999988


Q ss_pred             HHH
Q 010008          466 EGV  468 (520)
Q Consensus       466 ~~l  468 (520)
                      +++
T Consensus       359 ~~~  361 (362)
T 3ffr_A          359 EKI  361 (362)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            753

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.94  E-value=8.1e-26  Score=235.04  Aligned_cols=339  Identities=14%  Similarity=0.059  Sum_probs=227.1

Q ss_pred             cceEecCC-C--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           95 SLELIASE-N--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        95 ~i~Liase-n--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      .|+|..+. +  ++++.|++++...+.+....+|+..   .|   ..++.+...+++++++|.+.+.- -+|.+++|+ +
T Consensus        41 ~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~---~g---~~~l~~~l~~~l~~~~g~~~~~~-~~i~~~~g~~~  113 (407)
T 3nra_A           41 PVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEY---RG---DLGIRDLLAPRLAAFTGAPVDAR-DGLIITPGTQG  113 (407)
T ss_dssp             CEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHHSCCT---TC---CHHHHHHHHHHHHHHHTSCCCTT-TSEEEESHHHH
T ss_pred             eeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCCcCCC---CC---CHHHHHHHHHHHHHHhCCCCCCC-CcEEEeCCcHH
Confidence            46665432 3  3678999999888764322234321   12   13445555688999999853100 034446665 9


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccC-----CCCCCCCHHHHHHHhhhcCCcE
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-----ESTGLVDYDMLEKTAILFRPKL  245 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d-----~~~~~iD~d~le~~i~~~~pkl  245 (520)
                      |+..++.++++|||+|++.+|.|.++..        .+...|.  +++.++++     .+++.+|++++++++++ ++++
T Consensus       114 a~~~~~~~l~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~  182 (407)
T 3nra_A          114 ALFLAVAATVARGDKVAIVQPDYFANRK--------LVEFFEG--EMVPVQLDYVSADETRAGLDLTGLEEAFKA-GARV  182 (407)
T ss_dssp             HHHHHHHTTCCTTCEEEEEESCCTHHHH--------HHHHTTC--EEEEEEBCCCSSCCSSCCBCHHHHHHHHHT-TCCE
T ss_pred             HHHHHHHHhCCCCCEEEEcCCcccchHH--------HHHHcCC--EEEEeecccccccCcCCCcCHHHHHHHHhh-CCcE
Confidence            9999999999999999999998765431        2334555  55566663     24678999999999988 8999


Q ss_pred             EEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCC-------CcccEEEeccCccc--CCCC
Q 010008          246 IIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-------KYCDVVTTTTHKSL--RGPR  311 (520)
Q Consensus       246 Ii~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~-------~~aDiv~~S~hK~l--~Gpr  311 (520)
                      |++..++||+  ..+   +++|+++|+++|+++|+|++|..+ ...+....++       ...++++.|+||++  .|.|
T Consensus       183 v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~-~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r  261 (407)
T 3nra_A          183 FLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRL-RYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYR  261 (407)
T ss_dssp             EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTS-BCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGC
T ss_pred             EEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeee
Confidence            9998888886  566   899999999999999999997643 3332211121       13458899999997  5788


Q ss_pred             ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEec
Q 010008          312 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVS  390 (520)
Q Consensus       312 gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~  390 (520)
                      .|++++++      ++.+.+.........++ +....+++..+++. ....+++..+++.++++.+.+.|.+. |+.+..
T Consensus       262 ~G~~~~~~------~~~~~l~~~~~~~~~~~-~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  333 (407)
T 3nra_A          262 LGVAFGSR------AIIARMEKLQAIVSLRA-AGYSQAVLRGWFDE-APGWMEDRIARHQAIRDELLHVLRGCEGVFART  333 (407)
T ss_dssp             CEEEEECH------HHHHHHHHHHHHHTSSS-CHHHHGGGGGTTCC-CTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCC
T ss_pred             EEEEEcCH------HHHHHHHHHHhhhccCC-ChHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCceecc
Confidence            89999977      66666544322222222 22233333323331 11335777888889999999999885 787755


Q ss_pred             CCCCCeeEEEEecCCCCCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          391 GGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       391 ~gt~~~~~~vd~~~~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +. ...++++++...+.+..++.+.| +++||.+..+..++   +..++++||++..      ++++++++++.|.++++
T Consensus       334 ~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~---~~~~~~iRis~~~------~~~~i~~~~~~l~~~~~  403 (407)
T 3nra_A          334 PQ-AGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFS---PHTADSVRLNFSQ------DHEAAVAAARRIVTLVE  403 (407)
T ss_dssp             CS-BSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTC---TTCTTBEEEECCS------CHHHHHHHHHHHHHHHH
T ss_pred             CC-eeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhC---CCCCCEEEEEeCC------CHHHHHHHHHHHHHHHH
Confidence            42 33556777754456777777777 56799996543222   2346789999752      58999999999998876


Q ss_pred             H
Q 010008          470 I  470 (520)
Q Consensus       470 ~  470 (520)
                      .
T Consensus       404 ~  404 (407)
T 3nra_A          404 R  404 (407)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.94  E-value=4.9e-25  Score=227.99  Aligned_cols=352  Identities=13%  Similarity=0.114  Sum_probs=232.2

Q ss_pred             cccChHHHHHHHHHHHHhhccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHc
Q 010008           75 GEADPEVCEIITKEKERQFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF  152 (520)
Q Consensus        75 ~~~d~~~~~~~~~e~~~~~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lf  152 (520)
                      ....+.++..+.+.. ...+.|+|..+++.  .++.|++++...+.+. ..+|+..      ....++++...+++++.+
T Consensus        13 ~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~------~g~~~l~~~la~~l~~~~   84 (386)
T 1u08_A           13 PQLGTTIFTQMSALA-QQHQAINLSQGFPDFDGPRYLQERLAHHVAQG-ANQYAPM------TGVQALREAIAQKTERLY   84 (386)
T ss_dssp             CCCCCCHHHHHHHHH-HHTTCEECCCSSCSSCCCHHHHHHHHHHHHTT-CCSCCCT------TCCHHHHHHHHHHHHHHH
T ss_pred             hcCCccHHHHHHHHH-hcCCeEEecCCCCCCCCCHHHHHHHHHHHHhh-ccCCCCC------CCCHHHHHHHHHHHHHHh
Confidence            334444454443322 22456888777642  6799999998887642 1234321      113466666667888888


Q ss_pred             CCC--CCCCceeeecCCh-HHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCC
Q 010008          153 NLD--ENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV  229 (520)
Q Consensus       153 g~~--~~~~~~~V~~~sG-s~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~i  229 (520)
                      |.+  ++.   +|.+++| ++|+..++.++++|||+|++.+|.|.++..        .+...|.  +++.++++++++.+
T Consensus        85 g~~~~~~~---~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~  151 (386)
T 1u08_A           85 GYQPDADS---DITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAP--------AIALSGG--IVKRMALQPPHFRV  151 (386)
T ss_dssp             SCCCCTTT---TEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECCTTTCCC
T ss_pred             CCCCCCCC---CEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHH--------HHHHcCC--EEEEeecCcccCcC
Confidence            854  430   2333555 599999999999999999999998865421        2334454  66666676546789


Q ss_pred             CHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCC------CcccE
Q 010008          230 DYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF------KYCDV  298 (520)
Q Consensus       230 D~d~le~~i~~~~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~------~~aDi  298 (520)
                      |+++|++++++ ++++|+++.++||+  ..   ++++|.++|+++|+++|+|++|.. +...+....++      ...|+
T Consensus       152 d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~i  229 (386)
T 1u08_A          152 DWQEFAALLSE-RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEH-INFSQQGHASVLAHPQLRERAV  229 (386)
T ss_dssp             CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTT-CBCCSSCCCCGGGSHHHHTTEE
T ss_pred             CHHHHHHhhcc-cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccc-cccCCCCCcChhcccCccCcEE
Confidence            99999999976 89999998888886  44   468899999999999999999754 33322211122      14689


Q ss_pred             EEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q 010008          299 VTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA  376 (520)
Q Consensus       299 v~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~  376 (520)
                      +++|+||++  +|.|.|++++++      ++.+.+.........+. +....+++..+|+.. ....++..+++.++++.
T Consensus       230 ~~~s~sK~~~~~G~r~G~~~~~~------~~~~~l~~~~~~~~~~~-~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~  301 (386)
T 1u08_A          230 AVSSFGKTYHMTGWKVGYCVAPA------PISAEIRKVHQYLTFSV-NTPAQLALADMLRAE-PEHYLALPDFYRQKRDI  301 (386)
T ss_dssp             EEEEHHHHTTCGGGCCEEEECCH------HHHHHHHHHHHHHTSSC-CHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHH
T ss_pred             EEecchhhcCCcccceEEEEcCH------HHHHHHHHHHHhhccCC-ChHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHH
Confidence            999999997  467789999987      66665543221111222 333444555567654 33456778888899999


Q ss_pred             HHHHHHHCCCEEecCCCCCeeEEEEecCCC-CCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCH
Q 010008          377 LASRLVELGYKLVSGGSDNHLVLVDLRPMG-IDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSE  454 (520)
Q Consensus       377 l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g-~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~  454 (520)
                      +.+.|.+.|+++..+ ..++++++++...+ .+..++.+.| +++||.+..+...+. .+..++++||++.      .++
T Consensus       302 l~~~L~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~-~~~~~~~iRis~~------~~~  373 (386)
T 1u08_A          302 LVNALNESRLEILPC-EGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCA-DPFPHKLIRLCFA------KKE  373 (386)
T ss_dssp             HHHHTTSSSCEECCC-CBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCS-SCCCSCEEEEECC------SCH
T ss_pred             HHHHHHHCCCeecCC-CceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCC-CCCCCCEEEEEEc------CCH
Confidence            999998888887654 23466777775321 4566776655 579999854321110 1124578999975      257


Q ss_pred             HHHHHHHHHHH
Q 010008          455 KEFVAIADFIH  465 (520)
Q Consensus       455 ~d~~~la~~i~  465 (520)
                      ++++++++.|.
T Consensus       374 ~~i~~~~~~l~  384 (386)
T 1u08_A          374 STLLAAAERLR  384 (386)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            89988888775

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.94  E-value=1e-25  Score=236.43  Aligned_cols=337  Identities=13%  Similarity=0.116  Sum_probs=232.7

Q ss_pred             hccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC--CCCCCCceeeecCCh
Q 010008           93 FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSG  168 (520)
Q Consensus        93 ~~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg--~~~~~~~~~V~~~sG  168 (520)
                      ++.|+|..+++  ..++.|.+++...+.+. ..+|+.      .  .+++++..++++++.+|  ++++    +|.+++|
T Consensus        61 ~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~------~--~~~l~~~l~~~l~~~~g~~~~~~----~v~~~~g  127 (421)
T 3l8a_A           61 PELLQMWVADMDFLPVPEIKEAIINYGREH-IFGYNY------F--NDDLYQAVIDWERKEHDYAVVKE----DILFIDG  127 (421)
T ss_dssp             TTCEECCSSCCCSCCCHHHHHHHHHHHHHC-CSSCBC------C--CHHHHHHHHHHHHHHHCCCCCGG----GEEEESC
T ss_pred             CCeeecccCCCCCCCCHHHHHHHHHHHhcC-CcCCCC------C--CHHHHHHHHHHHHHHhCCCCCHH----HEEEcCC
Confidence            35688876664  36899999999887642 224432      1  14556667789999999  4454    3444565


Q ss_pred             H-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccC--CCCCCCCHHHHHHHhhhcCCcE
Q 010008          169 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD--ESTGLVDYDMLEKTAILFRPKL  245 (520)
Q Consensus       169 s-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d--~~~~~iD~d~le~~i~~~~pkl  245 (520)
                      + +|+.+++.+++++||+|++.++.|.+...        .+...|.  +++.++++  ..++.+|+++|+++++..++++
T Consensus       128 ~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~  197 (421)
T 3l8a_A          128 VVPAISIALQAFSEKGDAVLINSPVYYPFAR--------TIRLNDH--RLVENSLQIINGRFEIDFEQLEKDIIDNNVKI  197 (421)
T ss_dssp             HHHHHHHHHHHHSCTEEEEEEEESCCHHHHH--------HHHHTTE--EEEEEECEEETTEEECCHHHHHHHHHHTTEEE
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCCCcHHHHH--------HHHHCCC--EEEeccccccCCCeeeCHHHHHHHhhccCCeE
Confidence            5 89999999999999999999988755321        2333454  55555554  2335789999999998448999


Q ss_pred             EEEcCCCCCC--C---CCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-------cccEEEeccCccc--CCCC
Q 010008          246 IIAGASAYPR--D---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-------YCDVVTTTTHKSL--RGPR  311 (520)
Q Consensus       246 Ii~~~s~~p~--~---~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-------~aDiv~~S~hK~l--~Gpr  311 (520)
                      |+++.++||+  .   .++++|+++|+++|++||+|++|. ++...+....++.       ..++++.|+||++  +|.|
T Consensus       198 vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~  276 (421)
T 3l8a_A          198 YLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQ-DLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTK  276 (421)
T ss_dssp             EEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGC
T ss_pred             EEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcccc-ccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhh
Confidence            9999888886  3   368899999999999999999964 5444432222221       2348889999987  5778


Q ss_pred             ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEec
Q 010008          312 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVS  390 (520)
Q Consensus       312 gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~  390 (520)
                      .|+++++++     ++.+.+.........++++...+++...+++.. ....++..+++.++++.+.+.|++ .|+.++.
T Consensus       277 ~G~~~~~~~-----~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~  350 (421)
T 3l8a_A          277 NSFAIIQNE-----SLRRKFQYRQLANNQHEVPTVGMIATQAAFQYG-KPWLEELKTVIEGNIKLVIKELEAKTKIKVME  350 (421)
T ss_dssp             CEEEECCSH-----HHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCSCEEEC
T ss_pred             eEeEEcCCH-----HHHHHHHHHHHhcccCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhCCCceEeC
Confidence            899999843     666666543222223345555666666667652 223477788888999999999988 5888876


Q ss_pred             CCCCCeeEEEEecCCCCCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          391 GGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       391 ~gt~~~~~~vd~~~~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      + ..+.+.|+++...+++..++.+.| +++||.++.+...+   ....+.+||+.+      .+++++++.++.|.++++
T Consensus       351 ~-~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~---~~~~~~iRi~~~------~~~~~i~~~l~~l~~~l~  420 (421)
T 3l8a_A          351 P-EGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFG---KEGKYFARLNVA------TPKNTVQEALSRIISVFG  420 (421)
T ss_dssp             C-SBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGC---GGGTTEEEEECC------SCHHHHHHHHHHHHHHC-
T ss_pred             C-CeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhC---CCCCCEEEEEec------CCHHHHHHHHHHHHHHHh
Confidence            4 235566788865456666777666 57899996432221   223578999865      247999999999987754

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.1e-25  Score=241.25  Aligned_cols=327  Identities=13%  Similarity=0.100  Sum_probs=229.2

Q ss_pred             hHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCceeeecCChHHHHHHHHHhhCC--
Q 010008          106 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGSPANFEVYTAILK--  181 (520)
Q Consensus       106 ~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~sGs~A~~~~l~all~--  181 (520)
                      ++.+.+++...+... ....+.  .|...+...++|+.+++++++++|++  .+ .  .+.+++|++|+.+++.++.+  
T Consensus        77 ~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~l~~~~~~~la~~~g~~~~~~-~--~~~~~ggt~a~~~a~~a~~~~~  150 (497)
T 3mc6_A           77 GDDLIHLQTIAYEKY-CVANQL--HPDVFPAVRKMESEVVSMVLRMFNAPSDTG-C--GTTTSGGTESLLLACLSAKMYA  150 (497)
T ss_dssp             CHHHHHHHHHHHHHT-SSCBTT--CTTTCHHHHHHHHHHHHHHHHHTTCCTTTC-C--EEEESSHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHH-hhcCCC--CcccChHHHHHHHHHHHHHHHHhCCCCCCC-e--EEEcCcHHHHHHHHHHHHHHHH
Confidence            466777776665432 111111  13334556788888889999999998  33 2  34456667999999998865  


Q ss_pred             ---CC---CEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC
Q 010008          182 ---PH---DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR  255 (520)
Q Consensus       182 ---pG---D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~  255 (520)
                         +|   |+|+++.+.|.++.        +.+...|.  +++.++++++++.+|+++|++++++ +|++|+++.++||+
T Consensus       151 ~~~~g~~~~~Vi~~~~~h~~~~--------~~~~~~G~--~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~p~npt  219 (497)
T 3mc6_A          151 LHHRGITEPEIIAPVTAHAGFD--------KAAYYFGM--KLRHVELDPTTYQVDLGKVKKFINK-NTVLLVGSAPNFPH  219 (497)
T ss_dssp             HHHSCCSSCEEEEETTSCHHHH--------HHHHHSCC--EEEEECBCTTTCSBCTTTTGGGCCS-SEEEEEEETTCTTT
T ss_pred             HhcCCCCCceEEEeCCccHHHH--------HHHHHcCC--eEEEEecCcccCcCCHHHHHHHHhh-CCEEEEEECCCCCC
Confidence               56   99999988765432        23445565  6667777754689999999999987 89999999888765


Q ss_pred             --CCCHHHHHHHHHHhCCEEEEechhhccccc----ccccCC-CC----CcccEEEeccCcccCCCC-ceEEEeeCCCcc
Q 010008          256 --DFDYPRMRQIADAVGALLMMDMAHISGLVA----ASVVAD-PF----KYCDVVTTTTHKSLRGPR-GGMIFFKKDPVL  323 (520)
Q Consensus       256 --~~d~~~i~~ia~~~g~~li~D~Ah~~gli~----~~~~~~-p~----~~aDiv~~S~hK~l~Gpr-gG~I~~~~~~~~  323 (520)
                        ..|+++|+++|+++|++|++|++|..+...    .+.... ++    .++|++++|+||++.||. .|++++++    
T Consensus       220 G~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~----  295 (497)
T 3mc6_A          220 GIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRN----  295 (497)
T ss_dssp             CCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSS----
T ss_pred             CcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecC----
Confidence              789999999999999999999998754432    111111 12    278999999999985554 49999987    


Q ss_pred             hhhHHHhhcccCCCC----------CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCEEecC
Q 010008          324 GVELESAINNAVFPG----------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVSG  391 (520)
Q Consensus       324 ~~~l~~~i~~~~~p~----------~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~v~~~  391 (520)
                        +..........+.          ..|+.....+++++++++.+...+++++.+++.++++++.+.|.+.  |++++.+
T Consensus       296 --~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~  373 (497)
T 3mc6_A          296 --SDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGN  373 (497)
T ss_dssp             --HHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSC
T ss_pred             --HHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC
Confidence              3333322211121          2233344456677777776666677889999999999999999984  8998754


Q ss_pred             CCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          392 GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       392 gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      .. ..++.+.  ..++++.++.+.|.+.||.++...        .+.++|+++..     .+++|++++++.|.++++..
T Consensus       374 ~~-~~~v~~~--~~~~~~~~l~~~L~~~Gi~v~~~~--------~~~~~ri~~~~-----~t~e~i~~~~~~L~~~l~~~  437 (497)
T 3mc6_A          374 PR-YSVISFS--SKTLNIHELSDRLSKKGWHFNALQ--------KPVALHMAFTR-----LSAHVVDEICDILRTTVQEL  437 (497)
T ss_dssp             CC-SSEEEEE--CTTTTHHHHHHHHHTTTCBCEECC--------SSCCEEEECCT-----TTTCTHHHHHHHHHHHHHHH
T ss_pred             CC-eeEEEEe--CCCCCHHHHHHHHHhCCEEEecCC--------CCCeEEEEEeC-----CCHHHHHHHHHHHHHHHHHH
Confidence            32 2334443  345678889999999999885432        23478998762     34799999999999988654

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.94  E-value=2.9e-25  Score=233.25  Aligned_cols=282  Identities=17%  Similarity=0.131  Sum_probs=200.7

Q ss_pred             ccChHHH---HHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccC----CCCCCCCCCCCcchhHHHHHHHHHHHH
Q 010008           76 EADPEVC---EIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKY----SEGLPGKRYYGGNEYIDELETLCQKRA  148 (520)
Q Consensus        76 ~~d~~~~---~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y----~~G~p~~ryy~g~~~~d~lE~~a~~~~  148 (520)
                      .+++++.   +.++++.++|...+++++++|.  +.|++++.+.....+    ++||+..|+     ..+.+|    +++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~n~--~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~-----g~~~Le----~~l   83 (427)
T 3hvy_A           15 NINERVLELYERALNDVEKEFKYYDEIREYNQ--LKVLKAFQEERISESHFTNSSGYGYNDI-----GRDSLD----RVY   83 (427)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTTCCGGGSCCCCTTCTTCH-----HHHHHH----HHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHhcccCcCCCCCch-----hHHHHH----HHH
Confidence            4577766   6667788888899999999997  899999998654322    345543332     356666    678


Q ss_pred             HHHcCCCCCCCceeee--cCChHHHHHHHHHhhCCCCCEEEEcC-CCCCcccc--cccccc-ccccccccceEEEEEccc
Q 010008          149 LAAFNLDENKWGVNVQ--PLSGSPANFEVYTAILKPHDRIMGLD-LPHGGHLS--HGFMTP-KRRVSGTSIYFESMPYRL  222 (520)
Q Consensus       149 ~~lfg~~~~~~~~~V~--~~sGs~A~~~~l~all~pGD~Vl~~~-~~~~ghls--~g~~~~-~~~v~~~g~~~~~v~~~~  222 (520)
                      ++++|++..    .|+  ++||++||.+++.++++|||+|++.+ +.|+++..  ++.... ...+...|.  +++.+++
T Consensus        84 A~l~g~e~a----lv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~--~~~~v~~  157 (427)
T 3hvy_A           84 ANIFNTESA----FVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGV--KYKMVDL  157 (427)
T ss_dssp             HHHHTCSEE----EEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTC--EEEECCC
T ss_pred             HHHhCCCce----EEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCC--EEEEecC
Confidence            999999863    454  68999999999999999999999998 77765431  000000 011223454  6666665


Q ss_pred             CCCCCCCCHHHHHHHhhh-cCCcEEEEcC----CCCCC--CCCHHHHHHHHHH--hCCEEEEechhhcccccccccCCCC
Q 010008          223 DESTGLVDYDMLEKTAIL-FRPKLIIAGA----SAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPF  293 (520)
Q Consensus       223 d~~~~~iD~d~le~~i~~-~~pklIi~~~----s~~p~--~~d~~~i~~ia~~--~g~~li~D~Ah~~gli~~~~~~~p~  293 (520)
                        +++.+|++++++++++ .+||+|+++.    ++||+  ..|+++|+++|++  +|+++++|++|..+..    ...|+
T Consensus       158 --~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~----~~~p~  231 (427)
T 3hvy_A          158 --KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVE----EKEPT  231 (427)
T ss_dssp             --BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTS----SSCGG
T ss_pred             --CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCcccccc----CCCCc
Confidence              4688999999999983 3899999987    77775  5799999999999  8999999999865542    12344


Q ss_pred             C-cccEEEeccCcccCC---CCceEEEeeCCCcchhhHHHhhccc-CCCCCC--CCChHHHHHHHHHHHHHhcCchhHHH
Q 010008          294 K-YCDVVTTTTHKSLRG---PRGGMIFFKKDPVLGVELESAINNA-VFPGLQ--GGPHNHTIGGLAVCLKHAQSPEFKVY  366 (520)
Q Consensus       294 ~-~aDiv~~S~hK~l~G---prgG~I~~~~~~~~~~~l~~~i~~~-~~p~~~--g~p~~~~iaala~al~~~~~~~~~~~  366 (520)
                      . ++|++++|+||+++|   ++||+|++++      ++.+++... ..++..  .++.......+...++.     ...+
T Consensus       232 ~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~------~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~-----~~~r  300 (427)
T 3hvy_A          232 DVGADIIAGSLIKNIGGGIATTGGYIAGKE------EYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFM-----APHV  300 (427)
T ss_dssp             GGTCSEEEEETTSGGGTTTCCSCEEEEECH------HHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHH-----HHHH
T ss_pred             ccCCeEEEECCcccccccccceEEEEEECH------HHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhH-----HHHH
Confidence            4 689999999999987   8899999987      777776552 233331  22322111111112222     2457


Q ss_pred             HHHHHHHHHHHHHHHHHCCCEEecC
Q 010008          367 QNKVVSNCRALASRLVELGYKLVSG  391 (520)
Q Consensus       367 ~~~i~~na~~l~~~L~~~G~~v~~~  391 (520)
                      .++..+|+..+++.|++.|+++..+
T Consensus       301 ~~~~~~~a~~la~~L~~~g~~V~p~  325 (427)
T 3hvy_A          301 TIEAVKGAVFCARIMELAGFDVLPK  325 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEESC
T ss_pred             HHHHHHHHHHHHHHHHhCCCeecCC
Confidence            8889999999999999999988543

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.94  E-value=1.5e-24  Score=225.19  Aligned_cols=334  Identities=14%  Similarity=0.109  Sum_probs=221.7

Q ss_pred             ccceEecCCC--CChHHHHHHHhhhhhccC---CCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceeeecC
Q 010008           94 KSLELIASEN--FTSRAVMEAVGSCLTNKY---SEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPL  166 (520)
Q Consensus        94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y---~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V~~~  166 (520)
                      +.|+|..+.+  .+++.|.+++...+.+..   ..+|+.   ..|   ..++++...+++.+.+|.  +++    +|.++
T Consensus        36 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~---~~g---~~~lr~~la~~l~~~~g~~~~~~----~i~~~  105 (398)
T 3ele_A           36 NVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTS---AQG---DVETRAAIAEFLNNTHGTHFNAD----NLYMT  105 (398)
T ss_dssp             GCEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCC---TTC---CHHHHHHHHHHHHHHHCCCCCGG----GEEEE
T ss_pred             CeEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCC---CCC---cHHHHHHHHHHHHHHhCCCCChH----HEEEc
Confidence            5688876654  367899999988876521   123432   112   235555666788888885  443    44556


Q ss_pred             ChH-HHHHHHHHhhCCCC-CEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCc
Q 010008          167 SGS-PANFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK  244 (520)
Q Consensus       167 sGs-~A~~~~l~all~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pk  244 (520)
                      +|+ +|+..++.++++|| |+|++.+|.|.++..        .+...|.  +++.++++++++.+|++++++++++ +++
T Consensus       106 ~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~-~~~  174 (398)
T 3ele_A          106 MGAAASLSICFRALTSDAYDEFITIAPYFPEYKV--------FVNAAGA--RLVEVPADTEHFQIDFDALEERINA-HTR  174 (398)
T ss_dssp             SSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHH--------HHHHTTC--EEEEECCCTTTSSCCHHHHHHTCCT-TEE
T ss_pred             cCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHH--------HHHHcCC--EEEEEecCCcCCcCCHHHHHHHhCc-CCC
Confidence            665 99999999999999 999999998765421        2234454  6777777765679999999999987 899


Q ss_pred             EEEEcCCCCCC--CCC---HHHHHHHHHH------hCCEEEEechhhcccccccc-cCCCCC--cccEEEeccCccc--C
Q 010008          245 LIIAGASAYPR--DFD---YPRMRQIADA------VGALLMMDMAHISGLVAASV-VADPFK--YCDVVTTTTHKSL--R  308 (520)
Q Consensus       245 lIi~~~s~~p~--~~d---~~~i~~ia~~------~g~~li~D~Ah~~gli~~~~-~~~p~~--~aDiv~~S~hK~l--~  308 (520)
                      +|+++.++||+  .++   +++|.++|++      +|+++|+|++|.. +...+. .+....  ..++++.|+||++  +
T Consensus       175 ~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~  253 (398)
T 3ele_A          175 GVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYRE-IVYDGIKVPFVTKYYDNTLVCYSYSKSLSLP  253 (398)
T ss_dssp             EEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTT-CBCTTCCCCCGGGTCSSEEEEEESTTTSSCT
T ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccc-cccCCCCcCChHhhcCCeEEEEehhhcCCCc
Confidence            99999888887  566   6677789998      9999999999653 343331 121111  3458899999987  6


Q ss_pred             CCCceEEEeeCCCcchhhHHHhhcccC-CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCE
Q 010008          309 GPRGGMIFFKKDPVLGVELESAINNAV-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYK  387 (520)
Q Consensus       309 GprgG~I~~~~~~~~~~~l~~~i~~~~-~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~  387 (520)
                      |+|.|+++++++......+...+.... ..+..+ ++....+++..+++   ...   ..+++.++++.+.+.|.+.|++
T Consensus       254 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~l~---~~~---~~~~~~~~~~~l~~~L~~~g~~  326 (398)
T 3ele_A          254 GERIGYVLVPDEVYDKAELYAAVCGAGRALGYVC-APSLFQKMIVKCQG---ATG---DINAYKENRDLLYEGLTRIGYH  326 (398)
T ss_dssp             TTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCC-SCHHHHHHHTTCTT---CCC---CHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cceeEEEEEcchhhhHHHHHHHHHHHhhhccccC-CCHHHHHHHHHHhc---CHH---HHHHHHHHHHHHHHHHHHcCCe
Confidence            788899999884211001222221110 111112 22222222222222   111   3567778889999999888888


Q ss_pred             EecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          388 LVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       388 v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      +..+. .+.++|+++..  .+..++.+.|.+.||.+..+..++     .++++||++.      .+++++++..+.|.++
T Consensus       327 ~~~~~-~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~-----~~~~iRis~~------~~~e~i~~~l~~l~~~  392 (398)
T 3ele_A          327 CFKPD-GAFYMFVKALE--DDSNAFCEKAKEEDVLIVAADGFG-----CPGWVRISYC------VDREMIKHSMPAFEKI  392 (398)
T ss_dssp             EECCS-BSSEEEEECSS--SCHHHHHHHHHTTTEECEESGGGT-----CTTEEEEECC------SCHHHHHHHHHHHHHH
T ss_pred             ecCCC-eeEEEEEEcCC--CCHHHHHHHHHHCCEEEeCccccC-----CCCeEEEEec------CCHHHHHHHHHHHHHH
Confidence            76542 34556777642  367788888999999995432221     2579999863      3589999999999988


Q ss_pred             HHH
Q 010008          468 VEI  470 (520)
Q Consensus       468 l~~  470 (520)
                      ++.
T Consensus       393 l~~  395 (398)
T 3ele_A          393 YKK  395 (398)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.94  E-value=1.9e-26  Score=236.57  Aligned_cols=332  Identities=14%  Similarity=0.095  Sum_probs=222.6

Q ss_pred             ccceEec--CCCCChHHHHHHHhhhhhccCCCCCC--CCCCCCcchhHHHHHHHHHHH-HHHHcCCCCCCCceeeecCCh
Q 010008           94 KSLELIA--SENFTSRAVMEAVGSCLTNKYSEGLP--GKRYYGGNEYIDELETLCQKR-ALAAFNLDENKWGVNVQPLSG  168 (520)
Q Consensus        94 ~~i~Lia--sen~~~~~V~ea~~s~l~~~y~~G~p--~~ryy~g~~~~d~lE~~a~~~-~~~lfg~~~~~~~~~V~~~sG  168 (520)
                      +.+.|..  +.+++++.|++++...+.+....++.  ....+...+...++    +++ +++++|.+      +|.+++|
T Consensus         8 ~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~la~~~~~~------~v~~~~g   77 (371)
T 2e7j_A            8 DFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDF----IHNQLPKFLGCD------VARVTNG   77 (371)
T ss_dssp             CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHH----HHTHHHHHTTSS------EEEEESS
T ss_pred             CcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHH----HHHHHHHHcCCC------EEEEeCC
Confidence            4456654  34678999999999877653211111  00011122333444    477 88999986      2334565


Q ss_pred             -HHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcc--cCCCCCCCCHHHHHHHhhh----c
Q 010008          169 -SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR--LDESTGLVDYDMLEKTAIL----F  241 (520)
Q Consensus       169 -s~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~--~d~~~~~iD~d~le~~i~~----~  241 (520)
                       ++|+..++.++++|||+|+++++.|.++..        .+...|.  +++.++  ++ +++.+|+++|+++++.    .
T Consensus        78 ~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~  146 (371)
T 2e7j_A           78 AREAKFAVMHSLAKKDAWVVMDENCHYSSYV--------AAERAGL--NIALVPKTDY-PDYAITPENFAQTIEETKKRG  146 (371)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEETTCCHHHHH--------HHHHTTC--EEEEECCCCT-TTCCCCHHHHHHHHHHHTTTS
T ss_pred             hHHHHHHHHHHHhCCCCEEEEccCcchHHHH--------HHHHcCC--eEEEeecccC-CCCCcCHHHHHHHHHhhcccC
Confidence             599999999999999999999998765432        2334555  566666  65 3578999999999983    2


Q ss_pred             CCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCcccCCC-CceEEE
Q 010008          242 RPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGP-RGGMIF  316 (520)
Q Consensus       242 ~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l~Gp-rgG~I~  316 (520)
                      ++++|++++++||+  ..|+++|.++|+++|+++|+|++|..|....     ++.  ++|++++|+||++.+| ++|+++
T Consensus       147 ~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~-----~~~~~~~di~~~s~sK~~~~~~~~G~~~  221 (371)
T 2e7j_A          147 EVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPV-----SLKEIGADFIVGSGHKSMAASGPIGVMG  221 (371)
T ss_dssp             CEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCC-----CHHHHTCSEEEEEHHHHSSCCSSCEEEE
T ss_pred             CeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCC-----ChhhcCCCEEEecCCcCCCCCCCcEEEE
Confidence            78999999888876  7899999999999999999999987764321     121  4799999999998665 559999


Q ss_pred             eeCCCcchhhHHHh-hcccCCCCC------CCCChHHHHHHHHHHHHHhcCchhHHHHHHH--HHHHHHHHHHHHHCCCE
Q 010008          317 FKKDPVLGVELESA-INNAVFPGL------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV--VSNCRALASRLVELGYK  387 (520)
Q Consensus       317 ~~~~~~~~~~l~~~-i~~~~~p~~------~g~p~~~~iaala~al~~~~~~~~~~~~~~i--~~na~~l~~~L~~~G~~  387 (520)
                      +++      ++.++ +......+.      .++++...++++..+++.+..    ++.+++  .++++++.+.|.+.|++
T Consensus       222 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~~~~  291 (371)
T 2e7j_A          222 MKE------EWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE----RIKRWDEEVEKARRFAAEMEKLGIK  291 (371)
T ss_dssp             ECT------TTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH----HGGGHHHHHHHHHHHHHHHHHTTCE
T ss_pred             Eec------hhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCcE
Confidence            988      45555 544332111      355666667666666765432    455667  78889999999888898


Q ss_pred             EecCCC-CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEE-EccCCccccCCCHHHHHHHHHHH
Q 010008          388 LVSGGS-DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIR-IGSPAMTTRGFSEKEFVAIADFI  464 (520)
Q Consensus       388 v~~~gt-~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giR-ig~~~~tt~g~~~~d~~~la~~i  464 (520)
                      ++.+.. ..+++++++.    +..++.+.|.+.||.+.. ..++.. ....++++| +++...   ..+++|++++++.|
T Consensus       292 ~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~---~~~~~~i~~~~~~l  363 (371)
T 2e7j_A          292 QLGDNPHNHDLMFFHAE----VLYEISKKAKGGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTY---GLSDEEVDYVLNAF  363 (371)
T ss_dssp             EESSSSCCSSEEEEECH----HHHHHHHHSSSGGGHHHH-HHHHTTEECSCTTCCSEEEEECT---TCCHHHHHHHHHHH
T ss_pred             EecCCCccCceEEEECC----CHHHHHHHHHHCCEEEEe-ccccccccCCCCCceEEEEeecc---CCCHHHHHHHHHHH
Confidence            875421 2456777764    456788888899998853 111000 011257899 987643   03489999999999


Q ss_pred             HHHHH
Q 010008          465 HEGVE  469 (520)
Q Consensus       465 ~~~l~  469 (520)
                      +++++
T Consensus       364 ~~~~~  368 (371)
T 2e7j_A          364 KEIIE  368 (371)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98875

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.94  E-value=3.9e-25  Score=229.67  Aligned_cols=334  Identities=15%  Similarity=0.171  Sum_probs=227.0

Q ss_pred             ccceEecCCC--C-ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHH
Q 010008           94 KSLELIASEN--F-TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP  170 (520)
Q Consensus        94 ~~i~Liasen--~-~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~  170 (520)
                      ..|+|..+++  + .++.+++++...+.+. ..++.+.++..|..   .+.+..++++++++|.+.     .+.+++|++
T Consensus        44 ~~idl~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~g~~---~~~~~l~~~la~~~g~~~-----v~~~~ggt~  114 (398)
T 3a2b_A           44 RVLMFGSNSYLGLTTDTRIIKAAQDALEKY-GTGCAGSRFLNGTL---DIHVELEEKLSAYVGKEA-----AILFSTGFQ  114 (398)
T ss_dssp             EEEECSCSCTTCGGGCHHHHHHHHHHHHHH-CSCCCSBTTTTCCC---HHHHHHHHHHHHHHTCSE-----EEEESSHHH
T ss_pred             eEEEeecccccCCCCCHHHHHHHHHHHHHc-CCCCCCcCcccCCc---HHHHHHHHHHHHHhCCCc-----EEEECCHHH
Confidence            4577777654  2 6789999998887542 22333222222321   222344578889999752     344566779


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc---CCcEEE
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLII  247 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~---~pklIi  247 (520)
                      |+..++.++++|||+|++.+|.|+++..        .+...|.  +++.++.      +|++++++++++.   ++++|+
T Consensus       115 a~~~~~~~~~~~gd~V~~~~p~~~~~~~--------~~~~~g~--~~~~v~~------~d~~~l~~~l~~~~~~~~~~v~  178 (398)
T 3a2b_A          115 SNLGPLSCLMGRNDYILLDERDHASIID--------GSRLSFS--KVIKYGH------NNMEDLRAKLSRLPEDSAKLIC  178 (398)
T ss_dssp             HHHHHHHHSSCTTCEEEEETTCCHHHHH--------HHHHSSS--EEEEECT------TCHHHHHHHHHTSCSSSCEEEE
T ss_pred             HHHHHHHHHhCCCCEEEECCccCHHHHH--------HHHHcCC--ceEEeCC------CCHHHHHHHHHhhccCCceEEE
Confidence            9999999999999999999998765531        2334555  5555543      6899999998764   689999


Q ss_pred             EcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccc-cccC-C--CCC-cccEEEeccCcccCCCCceEEEeeCC
Q 010008          248 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAA-SVVA-D--PFK-YCDVVTTTTHKSLRGPRGGMIFFKKD  320 (520)
Q Consensus       248 ~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~-~~~~-~--p~~-~aDiv~~S~hK~l~GprgG~I~~~~~  320 (520)
                      ++.++||+  ..++++|.++|+++|+++|+|++|..+.... +... .  .+. .+|++++|+||++. |.||++++++ 
T Consensus       179 ~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~GG~~~~~~-  256 (398)
T 3a2b_A          179 TDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLA-SLGGFVAGDA-  256 (398)
T ss_dssp             EESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC-SSCEEEEECH-
T ss_pred             EeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEeccccccc-CCCcEEEeCH-
Confidence            98888875  7899999999999999999999987664311 1100 0  111 36999999999985 6669999987 


Q ss_pred             CcchhhHHHhhcccCCC-CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEE
Q 010008          321 PVLGVELESAINNAVFP-GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVL  399 (520)
Q Consensus       321 ~~~~~~l~~~i~~~~~p-~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~  399 (520)
                           ++.+.+.....+ ...++++..+.++...+|+..  .+.++..+++.++++.+.+.|.+.|+++..+  ..++++
T Consensus       257 -----~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~g~~~~  327 (398)
T 3a2b_A          257 -----DVIDFLKHNARSVMFSASMTPASVASTLKALEII--QNEPEHIEKLWKNTDYAKAQLLDHGFDLGAT--ESPILP  327 (398)
T ss_dssp             -----HHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHTTCCBCSC--CSSEEE
T ss_pred             -----HHHHHHHHhcccceecCCCCHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHhcCCCcCCC--CCCEEE
Confidence                 666665442111 122344555554444566653  2345677888899999999999888887654  246667


Q ss_pred             EEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          400 VDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       400 vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +.+. .+.+..++.+.|.+.||.+..+..++.  +...+++||++...    .+++|++++++.|.++++.
T Consensus       328 ~~~~-~~~~~~~l~~~l~~~gi~v~~~~~~~~--~~~~~~iRis~~~~----~~~e~i~~~~~~l~~~l~~  391 (398)
T 3a2b_A          328 IFIR-SNEKTFWVTKMLQDDGVFVNPVVSPAV--PAEESLIRFSLMAT----HTYDQIDEAIEKMVKVFKQ  391 (398)
T ss_dssp             EECC-CHHHHHHHHHHHHHTTEECEEECTTTS--CGGGCEEEEECCTT----CCHHHHHHHHHHHHHHHHH
T ss_pred             EEcC-CHHHHHHHHHHHHHCCcEEEeeCCCCC--CCCCceEEEEEeCC----CCHHHHHHHHHHHHHHHHH
Confidence            7763 233456677778777999865432211  11357899997753    3589999999999988753

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.94  E-value=4.1e-24  Score=220.02  Aligned_cols=320  Identities=17%  Similarity=0.155  Sum_probs=226.1

Q ss_pred             ceEecCCCC--ChHHHHHHHhhhhhccC--CCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCceeeecCChH
Q 010008           96 LELIASENF--TSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGS  169 (520)
Q Consensus        96 i~Liasen~--~~~~V~ea~~s~l~~~y--~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~sGs  169 (520)
                      |+|..+++.  .++.+++++...+.+..  ..+|+.      ... .++++...+++.+.+|..  ++    +|.+++|+
T Consensus        33 idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~------~~~-~~l~~~la~~l~~~~g~~~~~~----~v~~~~G~  101 (369)
T 3cq5_A           33 IRLNTNENPYPPSEALVADLVATVDKIATELNRYPE------RDA-VELRDELAAYITKQTGVAVTRD----NLWAANGS  101 (369)
T ss_dssp             EECSSCCCCSCCCHHHHHHHHHHHHHHGGGTTSCCC------TTC-HHHHHHHHHHHHHHHCCCCCGG----GEEEESHH
T ss_pred             eeccCCCCCCCCCHHHHHHHHHHHHhcccccccCCC------ccH-HHHHHHHHHhhhhcccCCCChH----hEEECCCh
Confidence            788777764  57899999988875421  123332      112 466666666777776654  43    45667777


Q ss_pred             -HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEE
Q 010008          170 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA  248 (520)
Q Consensus       170 -~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~  248 (520)
                       +|+.+++.++++|||+|++.++.|.++..        .+...|.  +++.++.+ +++.+|++++++++++.++++|++
T Consensus       102 ~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~~  170 (369)
T 3cq5_A          102 NEILQQLLQAFGGPGRTALGFQPSYSMHPI--------LAKGTHT--EFIAVSRG-ADFRIDMDVALEEIRAKQPDIVFV  170 (369)
T ss_dssp             HHHHHHHHHHHCSTTCEEEEEESSCTHHHH--------HHHHTTC--EEEEEECC-TTSSCCHHHHHHHHHHHCCSEEEE
T ss_pred             HHHHHHHHHHhcCCCCEEEEcCCChHHHHH--------HHHHcCC--EEEEecCC-cCCCCCHHHHHHHhhccCCCEEEE
Confidence             88989999999999999999998865421        2233454  55666665 356899999999987657999999


Q ss_pred             cCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--c-ccEEEeccCccc--CCCCceEEEeeCCC
Q 010008          249 GASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--Y-CDVVTTTTHKSL--RGPRGGMIFFKKDP  321 (520)
Q Consensus       249 ~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~-aDiv~~S~hK~l--~GprgG~I~~~~~~  321 (520)
                      +.++||+  ..|.+++.++|+.+++++|+|++|..+........ .++  + .+++++|+||++  +|+|.|++++++  
T Consensus       171 ~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~--  247 (369)
T 3cq5_A          171 TTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATT-LLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANP--  247 (369)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGG-GTTTCTTTEEEEEESSSTTSCGGGCCEEEEECT--
T ss_pred             eCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHH-HHhhCCCCEEEEEechHhcCCcccceEEEEeCH--
Confidence            8888876  78999999999999999999999765431111000 011  2 458999999998  577889999987  


Q ss_pred             cchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEE
Q 010008          322 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVD  401 (520)
Q Consensus       322 ~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd  401 (520)
                          ++.+.+.....+.   +++....++...+++..  ..+++..+++.++++.+.+.|.+.|+.+..+  ..++++++
T Consensus       248 ----~~~~~l~~~~~~~---~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~~~~~~  316 (369)
T 3cq5_A          248 ----AFIDAVMLVRLPY---HLSALSQAAAIVALRHS--ADTLGTVEKLSVERVRVAARLEELGYAVVPS--ESNFVFFG  316 (369)
T ss_dssp             ----HHHHHHHTTSCTT---CSCHHHHHHHHHHHHTH--HHHHTHHHHHHHHHHHHHHHHHHHTCEEECC--SSSEEEEE
T ss_pred             ----HHHHHHHHcCCCC---CCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHhCCCEECCC--CCeEEEEE
Confidence                6777766543322   23444444444456531  2346677888899999999998888888643  34566777


Q ss_pred             ecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          402 LRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       402 ~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +.   .+..++.+.|.++||.+.    ||.    .++++||+++       +++|++++.+.|.++++
T Consensus       317 ~~---~~~~~l~~~l~~~gi~v~----~~~----~~~~iRis~~-------~~~~i~~~~~~l~~~~~  366 (369)
T 3cq5_A          317 DF---SDQHAAWQAFLDRGVLIR----DVG----IAGHLRTTIG-------VPEENDAFLDAAAEIIK  366 (369)
T ss_dssp             CC---SSHHHHHHHHHHTTEECB----CCS----CTTEEEEECC-------CHHHHHHHHHHHHHHHT
T ss_pred             CC---CCHHHHHHHHHHCCEEEE----ECC----CCCeEEEEeC-------CHHHHHHHHHHHHHHHh
Confidence            64   367778888899999984    331    2578999865       47999999999988764

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.94  E-value=2.1e-24  Score=226.55  Aligned_cols=360  Identities=12%  Similarity=0.044  Sum_probs=236.6

Q ss_pred             hccccChHHHHHHHHHHHHhhccceEecCCC--CChHHHHHHHhhhhhcc--CCCCCCCCCCCCcchhHHHHHHHHHHHH
Q 010008           73 SLGEADPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNK--YSEGLPGKRYYGGNEYIDELETLCQKRA  148 (520)
Q Consensus        73 ~l~~~d~~~~~~~~~e~~~~~~~i~Liasen--~~~~~V~ea~~s~l~~~--y~~G~p~~ryy~g~~~~d~lE~~a~~~~  148 (520)
                      ++...++.++..+.+.. .....|+|..+++  ..++.|++++...+...  ...+|+.      .....++++...+++
T Consensus        18 ~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~------~~g~~~l~~~la~~l   90 (429)
T 1yiz_A           18 RYQGSTKSVWVEYIQLA-AQYKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTR------GFGHPRLVQALSKLY   90 (429)
T ss_dssp             SCCCCTTCHHHHHHHHH-HHHCCEECCSSSCSSCCCHHHHHHHHHHHTCSCGGGGSCCC------SSCCHHHHHHHHHHH
T ss_pred             HhhhCCchHHHHHHHHh-ccCCEEEecCCCCCCCCCHHHHHHHHHHHhccccCccCCCC------CCCcHHHHHHHHHHH
Confidence            34445555665554432 2346788887765  36799999998887542  1123332      111245665666777


Q ss_pred             HHHcCCC--CCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC
Q 010008          149 LAAFNLD--ENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES  225 (520)
Q Consensus       149 ~~lfg~~--~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~  225 (520)
                      .+.+|.+  ++.   +|.+++|+ +|+.+++.++++|||+|++.+|.|.++..        .+...|.  +++.++++.+
T Consensus        91 ~~~~g~~~~~~~---~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~  157 (429)
T 1yiz_A           91 SQLVDRTINPMT---EVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEP--------MVKAAGG--IPRFIPLKPN  157 (429)
T ss_dssp             HHHHTSCCCTTT---SEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECBCC
T ss_pred             HHHhCCCCCCcC---CEEEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEEeCCcc
Confidence            7778854  430   24446665 99999999999999999999998765421        2233454  5566666644


Q ss_pred             ---------CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCC
Q 010008          226 ---------TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD  291 (520)
Q Consensus       226 ---------~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~  291 (520)
                               ++.+|+++|++++++ ++++|+++.++||+  ..   ++++|+++|+++|++||+|++|. ++...+....
T Consensus       158 ~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~g~~~~  235 (429)
T 1yiz_A          158 KTGGTISSADWVLDNNELEALFNE-KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYE-HMVFEPFEHI  235 (429)
T ss_dssp             CSSSSEEGGGCBCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTSCCC
T ss_pred             cccccccccCcccCHHHHHHHhcc-CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEecccc-ccccCCCCCc
Confidence                     457999999999976 89999988888886  44   48999999999999999999965 3333221111


Q ss_pred             C---C---CcccEEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHH-----h
Q 010008          292 P---F---KYCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH-----A  358 (520)
Q Consensus       292 p---~---~~aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~-----~  358 (520)
                      +   +   .+.|+++.|+||++  +|.|.|++++++      ++.+.+.........+ .+....+++..+|+.     .
T Consensus       236 ~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~------~~~~~l~~~~~~~~~~-~~~~~~~a~~~~l~~~~~~~~  308 (429)
T 1yiz_A          236 RICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPE------ALLKNLQMVHQNCVYT-CATPIQEAIAVGFETELKRLK  308 (429)
T ss_dssp             CGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEESCH------HHHHHHHHHHHTTTCC-CCHHHHHHHHHHHHHHHTTTT
T ss_pred             ChhhccCCcCceEEEecchhccCCCCcceEEEEeCH------HHHHHHHHHHhhcccC-CChHHHHHHHHHHhccccccc
Confidence            1   1   24689999999987  467789999987      6666654422111122 233444455556765     3


Q ss_pred             c-CchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCC-----------CCHHHHHHHH-hhcCeEEcC
Q 010008          359 Q-SPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMG-----------IDGARVEKIL-DMASITLNK  425 (520)
Q Consensus       359 ~-~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g-----------~~~~~~~~~L-~~~gI~v~~  425 (520)
                      . ...+++..+++.++++.+.+.|.+.|+.+..+. .++++++++....           .+..++.+.| +++||.+..
T Consensus       309 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~  387 (429)
T 1yiz_A          309 SPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQ-GGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIP  387 (429)
T ss_dssp             STTSHHHHHHHHHHHHHHHHHHHHHHHTCEEEECS-BSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-cceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeC
Confidence            1 233577788888999999999988888876542 3556777875321           3445566655 589999954


Q ss_pred             CCCCCCCC--CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          426 NSVPGDKS--ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       426 ~~~Pg~~~--~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      +...+...  ...++++||+..      .++++++++++.|.+++
T Consensus       388 g~~f~~~~~~~~~~~~iRis~~------~~~e~i~~~l~~l~~~l  426 (429)
T 1yiz_A          388 PSAFYSEPNKHLGEDFVRYCFF------KKDENLQKAAEILRKWK  426 (429)
T ss_dssp             GGGGSCGGGGGGTTTEEEEECC------SCHHHHHHHHHHHHHHS
T ss_pred             chHhCCCcccCCCCCeEEEEec------CCHHHHHHHHHHHHHhc
Confidence            32111000  012578999975      25899999999998765

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.94  E-value=4.5e-26  Score=236.38  Aligned_cols=333  Identities=16%  Similarity=0.133  Sum_probs=220.5

Q ss_pred             ccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHH
Q 010008           94 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  173 (520)
Q Consensus        94 ~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~  173 (520)
                      +.++|..+.+.+++.+++++...+...+   |     .+..+...+++    +.+++++|.+.     .|.++||++|+.
T Consensus        23 ~~~~l~~~~p~~~~~~~~a~~~~~~~~~---~-----~~~~~~~~~l~----~~la~~~~~~~-----~i~~~~gt~al~   85 (391)
T 3dr4_A           23 DLPRISVAAPRLDGNERDYVLECMDTTW---I-----SSVGRFIVEFE----KAFADYCGVKH-----AIACNNGTTALH   85 (391)
T ss_dssp             -----CCCCCCCCSSHHHHHHHHHHHTC---C-----SSCSHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHH
T ss_pred             CCceeccCCCCCCHHHHHHHHHHHHcCC---c-----cCCChHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHH
Confidence            4566666777788999999988876532   1     11234445555    67888999873     466789999999


Q ss_pred             HHHHhh-CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 010008          174 EVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA  252 (520)
Q Consensus       174 ~~l~al-l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~  252 (520)
                      +++.++ ++|||+|+++++.|.++..        .+...|.  +++.++++++++.+|++++++++++ ++++|+++++ 
T Consensus        86 ~~l~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~n~-  153 (391)
T 3dr4_A           86 LALVAMGIGPGDEVIVPSLTYIASAN--------SVTYCGA--TPVLVDNDPRTFNLDAAKLEALITP-RTKAIMPVHL-  153 (391)
T ss_dssp             HHHHHHTCCTTCEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTCSBCGGGSGGGCCT-TEEEECCBCG-
T ss_pred             HHHHHcCCCCcCEEEECCCchHHHHH--------HHHHCCC--EEEEEecCccccCcCHHHHHHhcCC-CceEEEEECC-
Confidence            999999 9999999999998865531        2334454  6777778767789999999999987 8888875421 


Q ss_pred             CCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEec--cCcccCCCCceEEEeeCCCcchhhHHHh
Q 010008          253 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTT--THKSLRGPRGGMIFFKKDPVLGVELESA  330 (520)
Q Consensus       253 ~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S--~hK~l~GprgG~I~~~~~~~~~~~l~~~  330 (520)
                      .+...|+++|.++|+++|++||+|++|..|....+.....  ..|++++|  .||+++|++||+++++++     ++.++
T Consensus       154 tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~--~~di~~~S~s~~K~l~~g~gg~~~~~~~-----~~~~~  226 (391)
T 3dr4_A          154 YGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGS--LGDCATFSFFGNAIITTGEGGMITTNDD-----DLAAK  226 (391)
T ss_dssp             GGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTS--SSSEEEEECBTTSSSCCBSCEEEEESCH-----HHHHH
T ss_pred             CCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeecc--cCCEEEEECCCCCcCCcCCeEEEEECCH-----HHHHH
Confidence            2237899999999999999999999998887655432222  24666666  669998888999998874     45444


Q ss_pred             hcccCCCCC----------CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecC--C----CC
Q 010008          331 INNAVFPGL----------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG--G----SD  394 (520)
Q Consensus       331 i~~~~~p~~----------~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~--g----t~  394 (520)
                      +......+.          .|.. . .+.++..++.......++++.++..++++++.+.|.+.|+.+...  .    ..
T Consensus       227 ~~~~~~~g~~~~~~~~~~~~g~~-~-~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~  304 (391)
T 3dr4_A          227 MRLLRGQGMDPNRRYWFPIVGFN-Y-RMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRHV  304 (391)
T ss_dssp             HHHHHBTTCCTTSTTCCSSCCCB-C-BCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGGTTSEECCCCCTTSCCC
T ss_pred             HHHHHhcCCCCCCcccccccccc-c-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCcCCCCCCcce
Confidence            432211110          0100 0 111122222222223456777888888999999998878876643  1    11


Q ss_pred             CeeEEEEecC-CCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCC--------------CCCEEEEccCCccccCCCHHHHH
Q 010008          395 NHLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDK-SAL--------------VPGGIRIGSPAMTTRGFSEKEFV  458 (520)
Q Consensus       395 ~~~~~vd~~~-~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~--------------~~~giRig~~~~tt~g~~~~d~~  458 (520)
                      .+++++.+.. .+++.+++.+.|.+.||.++....|.+. +.+              ....+|+++...    ++++|++
T Consensus       305 ~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~----~t~edi~  380 (391)
T 3dr4_A          305 FWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAG----LTEADID  380 (391)
T ss_dssp             CSSEEEEECSSCSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTT----CCHHHHH
T ss_pred             eEEEEEEECCccchhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCC----CCHHHHH
Confidence            2334555532 2567888999999999998755433211 110              134689987644    4699999


Q ss_pred             HHHHHHHHHH
Q 010008          459 AIADFIHEGV  468 (520)
Q Consensus       459 ~la~~i~~~l  468 (520)
                      ++++.|++++
T Consensus       381 ~~~~~l~~~l  390 (391)
T 3dr4_A          381 RVIAALDQVL  390 (391)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHHHh
Confidence            9999987653

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.94  E-value=3.9e-25  Score=230.25  Aligned_cols=341  Identities=12%  Similarity=0.020  Sum_probs=226.8

Q ss_pred             hccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-
Q 010008           93 FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-  169 (520)
Q Consensus        93 ~~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-  169 (520)
                      .+.|+|..+++  ++++.|++++...+.+....+|+...   |   ..++++...+++.+.+|.+.+. .-+|.+++|+ 
T Consensus        23 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~---g---~~~l~~~la~~~~~~~~~~~~~-~~~i~~~~g~~   95 (410)
T 3e2y_A           23 PSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRGF---G---HPALVKALSCLYGKIYQRQIDP-NEEILVAVGAY   95 (410)
T ss_dssp             TTSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCCTT---C---CHHHHHHHHHHHHHHHTSCCCT-TTSEEEESHHH
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHHhCccccCCCCCC---C---hHHHHHHHHHHHHHHhCCCCCC-CCCEEEeCCcH
Confidence            35688887765  36899999999888654333454311   1   2455655667777777765321 0145556766 


Q ss_pred             HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC----------CCCCCCHHHHHHHhh
Q 010008          170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE----------STGLVDYDMLEKTAI  239 (520)
Q Consensus       170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~----------~~~~iD~d~le~~i~  239 (520)
                      +|+..++.++++|||+|++++|.|.++..        .+...|.  +++.+++++          .++.+|+++++++++
T Consensus        96 ~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~  165 (410)
T 3e2y_A           96 GSLFNSIQGLVDPGDEVIIMVPFYDCYEP--------MVRMAGA--VPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFS  165 (410)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECEECCCCSSCCBGGGEECCHHHHHTTCC
T ss_pred             HHHHHHHHHhcCCCCEEEEeCCCchhhHH--------HHHHcCC--EEEEEeccccccccccccccCCcCCHHHHHhhcC
Confidence            99999999999999999999988765421        2334455  444554442          245689999999997


Q ss_pred             hcCCcEEEEcCCCCCC--C---CCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC------cccEEEeccCccc-
Q 010008          240 LFRPKLIIAGASAYPR--D---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK------YCDVVTTTTHKSL-  307 (520)
Q Consensus       240 ~~~pklIi~~~s~~p~--~---~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~------~aDiv~~S~hK~l-  307 (520)
                      + ++++|+++.++||+  .   .++++|+++|+++|+++|+|++|. ++...+....++.      ..++++.|+||++ 
T Consensus       166 ~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g  243 (410)
T 3e2y_A          166 S-KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYE-WLVYTGHTHVKIATLPGMWERTITIGSAGKTFS  243 (410)
T ss_dssp             T-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSS
T ss_pred             C-CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhh-hcccCCCCCCCHHHcCCccCeEEEEecchhhcC
Confidence            7 89999999888886  3   268999999999999999999964 4443332221221      2348889999987 


Q ss_pred             -CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHH------hcCchhHHHHHHHHHHHHHHHHH
Q 010008          308 -RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH------AQSPEFKVYQNKVVSNCRALASR  380 (520)
Q Consensus       308 -~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~------~~~~~~~~~~~~i~~na~~l~~~  380 (520)
                       +|+|.|++++++      ++.+.+.........+. +....++++.+++.      ......++..+++.++++.+.+.
T Consensus       244 ~~G~r~G~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  316 (410)
T 3e2y_A          244 VTGWKLGWSIGPA------HLIKHLQTVQQNSFYTC-ATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRL  316 (410)
T ss_dssp             CGGGCCEEEECCH------HHHHHHHHHHHTTTCCC-CHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEECH------HHHHHHHHHHHhhccCC-ChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHH
Confidence             578889999987      66666554322222233 33444444455653      11334577888889999999999


Q ss_pred             HHHCCCEEecCCCCCeeEEEEecCC--CCCH---------HHHHHHHhhcCeEEcCCCCCCCCC--CCCCCEEEEccCCc
Q 010008          381 LVELGYKLVSGGSDNHLVLVDLRPM--GIDG---------ARVEKILDMASITLNKNSVPGDKS--ALVPGGIRIGSPAM  447 (520)
Q Consensus       381 L~~~G~~v~~~gt~~~~~~vd~~~~--g~~~---------~~~~~~L~~~gI~v~~~~~Pg~~~--~~~~~giRig~~~~  447 (520)
                      |.+.|+.+..+. .++++++++...  +++.         +.+..+|+++||.+..+...+...  +...+.|||++.  
T Consensus       317 L~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--  393 (410)
T 3e2y_A          317 LNSVGLKPIVPD-GGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFI--  393 (410)
T ss_dssp             HHTTTCEEEBCS-BSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECC--
T ss_pred             HHHCCCeecCCC-ccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEc--
Confidence            998899876653 356677777532  2222         345556788999995432111100  113578999854  


Q ss_pred             cccCCCHHHHHHHHHHHHH
Q 010008          448 TTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       448 tt~g~~~~d~~~la~~i~~  466 (520)
                          .+++++++.++.|++
T Consensus       394 ----~~~e~l~~~l~~l~~  408 (410)
T 3e2y_A          394 ----KKDSTLDAAEEIFRA  408 (410)
T ss_dssp             ----CCHHHHHHHHHHHHT
T ss_pred             ----CCHHHHHHHHHHHHh
Confidence                268999999988764

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.94  E-value=2.6e-25  Score=228.82  Aligned_cols=332  Identities=14%  Similarity=0.128  Sum_probs=225.7

Q ss_pred             hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCceeeecCCh
Q 010008           93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSG  168 (520)
Q Consensus        93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~sG  168 (520)
                      ++.|+|..+++.  +++.|++++...+.+. ..+|+. .   +.    ++++...+++.+.+|.+  ++    +|.+++|
T Consensus        23 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~-~---~~----~lr~~la~~~~~~~~~~~~~~----~i~~t~g   89 (377)
T 3fdb_A           23 QGVLPLWVAESDFSTCPAVLQAITDAVQRE-AFGYQP-D---GS----LLSQATAEFYADRYGYQARPE----WIFPIPD   89 (377)
T ss_dssp             TTSEECCSSCCCSCCCHHHHHHHHHHHHTT-CCSSCC-S---SC----CHHHHHHHHHHHHHCCCCCGG----GEEEESC
T ss_pred             CCeeeecccCCCCCCCHHHHHHHHHHHHcC-CCCCCC-C---CH----HHHHHHHHHHHHHhCCCCCHH----HEEEeCC
Confidence            367888887763  6899999999887653 234543 2   12    34444556777777754  43    3444555


Q ss_pred             H-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 010008          169 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII  247 (520)
Q Consensus       169 s-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi  247 (520)
                      + +|+.+++.++++|||+|++.+|.|.++..        .+...|.  +++.++++++   +|++++++++++ ++++|+
T Consensus        90 ~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~---~d~~~l~~~l~~-~~~~v~  155 (377)
T 3fdb_A           90 VVRGLYIAIDHFTPAQSKVIVPTPAYPPFFH--------LLSATQR--EGIFIDATGG---INLHDVEKGFQA-GARSIL  155 (377)
T ss_dssp             HHHHHHHHHHHHSCTTCCEEEEESCCTHHHH--------HHHHHTC--CEEEEECTTS---CCHHHHHHHHHT-TCCEEE
T ss_pred             hHHHHHHHHHHhcCCCCEEEEcCCCcHhHHH--------HHHHcCC--EEEEccCCCC---CCHHHHHHHhcc-CCCEEE
Confidence            5 99999999999999999999998765431        2233454  5666666643   999999999988 799999


Q ss_pred             EcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhccccccc-ccCCCCC-----cccEEEeccCccc--CCCCceE
Q 010008          248 AGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAAS-VVADPFK-----YCDVVTTTTHKSL--RGPRGGM  314 (520)
Q Consensus       248 ~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~-~~~~p~~-----~aDiv~~S~hK~l--~GprgG~  314 (520)
                      +..++||+  ..   ++++|+++|+++|+++|+|++|.. +...+ ....++.     ..++++.|+||++  +|.|.|+
T Consensus       156 i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~  234 (377)
T 3fdb_A          156 LCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAP-LVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQ  234 (377)
T ss_dssp             EESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGG-GBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEE
T ss_pred             EeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccch-hhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheE
Confidence            99888886  44   467788889999999999999654 44333 2222221     2348899999997  6778898


Q ss_pred             EEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCEEecCC
Q 010008          315 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVSGG  392 (520)
Q Consensus       315 I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~v~~~g  392 (520)
                      +++.++     ++.+.+...... ...+++....++...+++.. ...+++..+++.++++.+.+.|++.  |+.+..+.
T Consensus       235 ~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  307 (377)
T 3fdb_A          235 IIFSNP-----SDAEHWQQLSPV-IKDGASTLGLIAAEAAYRYG-TDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQ  307 (377)
T ss_dssp             EECCSH-----HHHHHHHHSCHH-HHCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCS
T ss_pred             EEeCCH-----HHHHHHHHHHHh-hcCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCC
Confidence            887543     666666543211 12334444555555566643 2335777888999999999999884  88887542


Q ss_pred             CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          393 SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       393 t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                       .+.+.++++...+.+.+.+..+++++||.+..+...   +...++++||+..      .+++++++.++.|.++++
T Consensus       308 -~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~---~~~~~~~~Ris~~------~~~e~i~~~l~~l~~~l~  374 (377)
T 3fdb_A          308 -ATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWF---GEDGTGFCRLNFA------TSREVLEEAIDRMAKAVS  374 (377)
T ss_dssp             -BCSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGG---CGGGTTEEEEECC------SCHHHHHHHHHHHHHHHT
T ss_pred             -eeEEEEEECcccCCCHHHHHHHHHhCCEEecCChhc---cCCCCCEEEEEeC------CCHHHHHHHHHHHHHHHh
Confidence             345557888654455445566667779999543211   1123678999865      247999999999988764

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.94  E-value=2.8e-25  Score=232.09  Aligned_cols=360  Identities=14%  Similarity=0.083  Sum_probs=235.4

Q ss_pred             hccccChHHHHHHHHHHHHhhccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHH
Q 010008           73 SLGEADPEVCEIITKEKERQFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALA  150 (520)
Q Consensus        73 ~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~  150 (520)
                      ++..+.+..+..+.+. ....+.|+|..+++.  .++.+.+++...+.+. ..+|+..      ....++++...+++.+
T Consensus         6 ~~~~~~~~~~~~~~~~-~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~------~g~~~l~~~la~~~~~   77 (411)
T 2o0r_A            6 RLRPYATTVFAEMSAL-ATRIGAVNLGQGFPDEDGPPKMLQAAQDAIAGG-VNQYPPG------PGSAPLRRAIAAQRRR   77 (411)
T ss_dssp             GGGGGSSCHHHHHHHH-HHTTTCEESSCSSCSSCCCHHHHHHHHHHHHTT-CCSCCCT------TCCHHHHHHHHHHHHH
T ss_pred             HhHhcCccHHHHHHHH-hhcCCeeeccCcCCCCCCCHHHHHHHHHHHhcC-CCCCCCC------CCCHHHHHHHHHHHHH
Confidence            3444555566555433 223456888777653  6789999999888652 2234321      1134666666678888


Q ss_pred             HcCCC--CCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC--
Q 010008          151 AFNLD--ENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--  225 (520)
Q Consensus       151 lfg~~--~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~--  225 (520)
                      .+|++  +++   +|.+++|+ +|+.+++.++++|||+|++.+|.|.++..        .+...|.  +++.++++++  
T Consensus        78 ~~g~~~~~~~---~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~--------~~~~~g~--~~~~v~~~~~~~  144 (411)
T 2o0r_A           78 HFGVDYDPET---EVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSP--------VVAMAGA--HRVTVPLVPDGR  144 (411)
T ss_dssp             HHCCCCCTTT---SEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECEEETT
T ss_pred             HcCCCCCCCc---eEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHH--------HHHHcCC--EEEEeecccccc
Confidence            88864  320   23446655 99999999999999999999998866421        2334455  5556666533  


Q ss_pred             CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCC------C
Q 010008          226 TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF------K  294 (520)
Q Consensus       226 ~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~------~  294 (520)
                      ++.+|+++|++++++ ++++|+++.++||+  ..+   +++|+++|+++|++||+|++|..+ ...+..+.++      .
T Consensus       145 ~~~~d~~~l~~~l~~-~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~  222 (411)
T 2o0r_A          145 GFALDADALRRAVTP-RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHL-VFDHARHLPLAGFDGMA  222 (411)
T ss_dssp             EEECCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTC-BCTTCCCCCGGGSTTTG
T ss_pred             CCCCCHHHHHHhhcc-CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCCCCCcChhhccCCC
Confidence            356999999999987 89999988888876  444   589999999999999999997543 3322211111      2


Q ss_pred             cccEEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010008          295 YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVS  372 (520)
Q Consensus       295 ~aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~  372 (520)
                      +.|++++|+||++  +|.|.|++++++      ++.+.+.........+.+. ...+++..+|+.. ...+++..+++.+
T Consensus       223 ~~~i~~~s~sK~~~~~G~r~G~~~~~~------~~~~~l~~~~~~~~~~~~~-~~~~a~~~~l~~~-~~~~~~~~~~~~~  294 (411)
T 2o0r_A          223 ERTITISSAAKMFNCTGWKIGWACGPA------ELIAGVRAAKQYLSYVGGA-PFQPAVALALDTE-DAWVAALRNSLRA  294 (411)
T ss_dssp             GGEEEEEEHHHHTTCTTTCEEEEECCH------HHHHHHHHHHHHHTSCCCT-THHHHHHHHHHHC-HHHHHHHHHHHHH
T ss_pred             CCEEEEeechhhcCCccceEEEEeeCH------HHHHHHHHHHhhccCCCCh-HHHHHHHHHHhCC-hHHHHHHHHHHHH
Confidence            4689999999987  567789999976      6666554321110111222 2334444566543 2345777888889


Q ss_pred             HHHHHHHHHHHCCCEEecCCCCCeeEEEEecCC-CCCHHHHHHHH-hhcCeEEcCCCCC-CCC-------CCCCCCEEEE
Q 010008          373 NCRALASRLVELGYKLVSGGSDNHLVLVDLRPM-GIDGARVEKIL-DMASITLNKNSVP-GDK-------SALVPGGIRI  442 (520)
Q Consensus       373 na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~-g~~~~~~~~~L-~~~gI~v~~~~~P-g~~-------~~~~~~giRi  442 (520)
                      +++.+.+.|.+.|+++..+. .+.++++++... +.+..++.+.| ++.||.+..+... +..       ....++++||
T Consensus       295 ~~~~l~~~L~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRi  373 (411)
T 2o0r_A          295 RRDRLAAGLTEIGFAVHDSY-GTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRF  373 (411)
T ss_dssp             HHHHHHHHHHHHTCEECCCC-BSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEE
T ss_pred             HHHHHHHHHHHcCCEecCCC-eeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEE
Confidence            99999999988888876542 345677777532 24566666655 5789998543211 100       0013467999


Q ss_pred             ccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          443 GSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       443 g~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      ++.      .+++|++++++.|.++++.
T Consensus       374 s~~------~~~e~i~~~~~~l~~~~~~  395 (411)
T 2o0r_A          374 TFC------KRDDTLDEAIRRLSVLAER  395 (411)
T ss_dssp             ECC------SCHHHHHHHHHHHGGGGC-
T ss_pred             Eec------CCHHHHHHHHHHHHHHHhc
Confidence            964      2578999999999876643

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=4.8e-25  Score=233.33  Aligned_cols=356  Identities=13%  Similarity=0.096  Sum_probs=232.7

Q ss_pred             cChHHHHHHHHHHH--------HhhccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHH
Q 010008           77 ADPEVCEIITKEKE--------RQFKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQK  146 (520)
Q Consensus        77 ~d~~~~~~~~~e~~--------~~~~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~  146 (520)
                      ..+..+..+.+...        ...+.|+|..+++  .+++.|.+++...+.+....+|+..   .|   ..++++...+
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~---~g---~~~lr~~ia~  106 (447)
T 3b46_A           33 TAKDVWSLTNEAAAKAANNSKNQGRELINLGQGFFSYSPPQFAIKEAQKALDIPMVNQYSPT---RG---RPSLINSLIK  106 (447)
T ss_dssp             CCCCHHHHHHHHHHHHCCC---TTSCCEECCCCSCSSCCCHHHHHHHHHHTTSGGGGSCCCT---TC---CHHHHHHHHH
T ss_pred             cCccHHHHHHHHHHhhccchhccCCCeEEccCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCC---CC---CHHHHHHHHH
Confidence            55666766655442        2235788877764  3678999999888754112234321   12   2355555556


Q ss_pred             HHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC
Q 010008          147 RALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES  225 (520)
Q Consensus       147 ~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~  225 (520)
                      ++.+.+|.+.+ . -+|.+++|+ +|+.+++.++++|||+|++++|.|.++..        .+...|.  +++.++++++
T Consensus       107 ~l~~~~g~~~~-~-~~v~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~  174 (447)
T 3b46_A          107 LYSPIYNTELK-A-ENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIP--------NIELCGG--KVVYVPINPP  174 (447)
T ss_dssp             HHTTTTTSCCC-G-GGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEEEECC
T ss_pred             HHHHhcCCCCC-h-hhEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHH--------HHHHcCC--EEEEEeCCCc
Confidence            77777776432 1 145567775 99999999999999999999998765421        2334555  5556666543


Q ss_pred             -----------CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhccccccccc
Q 010008          226 -----------TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVV  289 (520)
Q Consensus       226 -----------~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~  289 (520)
                                 ++.+|+++|++++++ ++++|+++.++||+  ..   ++++|+++|+++|++||+|++|. ++.+.+..
T Consensus       175 ~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~~~~g~~  252 (447)
T 3b46_A          175 KELDQRNTRGEEWTIDFEQFEKAITS-KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYE-HLYFTDSF  252 (447)
T ss_dssp             GGGGTSCBCSTTSEECHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBCSSCC
T ss_pred             cccccccccccCcccCHHHHHHhhcc-CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccch-hcccCCCC
Confidence                       467999999999986 89999999888886  33   68899999999999999999965 44443311


Q ss_pred             CC--CC----CcccEEEeccCccc--CCCCceEEEe-eCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc-
Q 010008          290 AD--PF----KYCDVVTTTTHKSL--RGPRGGMIFF-KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-  359 (520)
Q Consensus       290 ~~--p~----~~aDiv~~S~hK~l--~GprgG~I~~-~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~-  359 (520)
                      ..  .+    .+.++++.|+||++  +|+|.|++++ ++      ++.+.+.........+. +....++++.+|+... 
T Consensus       253 ~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~~~------~l~~~l~~~~~~~~~~~-~~~~~~a~~~aL~~~~~  325 (447)
T 3b46_A          253 TRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNA------ELLSYAAKAHTRICFAS-PSPLQEACANSINDALK  325 (447)
T ss_dssp             CCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECSCH------HHHHHHHHHHHHHTSSC-CHHHHHHHHHHHHHHHH
T ss_pred             cCHHHcCCCCCCcEEEEecCchhcCCcchhhEEEEeCCH------HHHHHHHHHHhhccCCC-ChHHHHHHHHHHhCCcc
Confidence            11  12    14679999999987  5888999999 66      66665543211111223 3334444555676542 


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCC--------------CCCHHHHHHHH-hhcCeEEc
Q 010008          360 SPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM--------------GIDGARVEKIL-DMASITLN  424 (520)
Q Consensus       360 ~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~--------------g~~~~~~~~~L-~~~gI~v~  424 (520)
                      ...+++..+++.++++.+.+.|.+.|+++..+ ..+.++|+++...              +.+..++.+.| +++||.+.
T Consensus       326 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~  404 (447)
T 3b46_A          326 IGYFEKMRQEYINKFKIFTSIFDELGLPYTAP-EGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAI  404 (447)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHTCCEECC-SBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECB
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHCCCeecCC-CeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEE
Confidence            12357778889999999999998888887654 2356678887532              12344565555 57999994


Q ss_pred             CCCCCCCCC--CCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          425 KNSVPGDKS--ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       425 ~~~~Pg~~~--~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      .+...+...  +..+++|||+..      .+++++++.++.|.+
T Consensus       405 pg~~f~~~~~~~~~~~~iRls~~------~~~e~l~~~~~~l~~  442 (447)
T 3b46_A          405 PPTEFYIKEHEKAAENLLRFAVC------KDDAYLENAVERLKL  442 (447)
T ss_dssp             CGGGGSCGGGGGGGTTEEEEECC------SCHHHHHHHHHHGGG
T ss_pred             CchHhCCCCccCCCCCEEEEEEe------CCHHHHHHHHHHHHH
Confidence            432111000  112578999975      247888888877754

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.93  E-value=6.1e-25  Score=229.48  Aligned_cols=338  Identities=17%  Similarity=0.114  Sum_probs=224.1

Q ss_pred             hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh-H
Q 010008           93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-S  169 (520)
Q Consensus        93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG-s  169 (520)
                      ...|+|..+++.  .++.|++++ ..+.+. ..+|+.      .....++++...+++.+.+|.+.+.  -+|.+++| +
T Consensus        43 ~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~-~~~y~~------~~g~~~l~~~la~~~~~~~g~~~~~--~~v~~~~g~t  112 (409)
T 2gb3_A           43 VRIHHLNIGQPDLKTPEVFFERI-YENKPE-VVYYSH------SAGIWELREAFASYYKRRQRVDVKP--ENVLVTNGGS  112 (409)
T ss_dssp             CEEEECSSCCCCSCCCTHHHHHH-HHTCCS-SCCCCC------TTCCHHHHHHHHHHHHHTSCCCCCG--GGEEEESHHH
T ss_pred             CCEEeccCCCCCCCCCHHHHHHH-HHHhcC-CCCCCC------CCCcHHHHHHHHHHHHHHhCCCCCH--HHEEEeCCHH
Confidence            356888777653  578999999 877542 223432      1223466666667777767754221  13444555 5


Q ss_pred             HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC-CCCCCCHHHHHHHhhhcCCcEEEE
Q 010008          170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIA  248 (520)
Q Consensus       170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-~~~~iD~d~le~~i~~~~pklIi~  248 (520)
                      +|+.+++.++++|||+|+++++.|.++..        .+...|.  +++.+++++ +++.+ +++|++++++ ++++|++
T Consensus       113 ~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~-~~~l~~~l~~-~~~~v~~  180 (409)
T 2gb3_A          113 EAILFSFAVIANPGDEILVLEPFYANYNA--------FAKIAGV--KLIPVTRRMEEGFAI-PQNLESFINE-RTKGIVL  180 (409)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHHTC--EEEEEECCGGGTSCC-CTTGGGGCCT-TEEEEEE
T ss_pred             HHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEeccCCCCCCcc-HHHHHHhhCc-CCeEEEE
Confidence            99999999999999999999998765421        2334454  566666653 23445 8889988877 8999999


Q ss_pred             cCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCC---CcccEEEeccCccc--CCCCceEEEee
Q 010008          249 GASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYCDVVTTTTHKSL--RGPRGGMIFFK  318 (520)
Q Consensus       249 ~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~---~~aDiv~~S~hK~l--~GprgG~I~~~  318 (520)
                      +.++||+  ..   ++++|.++|+++|++||+|++|..+ ...+.....+   ...|++++|+||++  +|.|.|+++++
T Consensus       181 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~  259 (409)
T 2gb3_A          181 SNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEI-VFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITR  259 (409)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTC-BCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECS
T ss_pred             CCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECccccc-ccCCCCCCccccCCCCEEEEecchhccCCccceEEEEEEC
Confidence            8888876  33   5899999999999999999997653 3322111112   24689999999998  56778999998


Q ss_pred             CCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEE-ecCCCCCee
Q 010008          319 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL-VSGGSDNHL  397 (520)
Q Consensus       319 ~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v-~~~gt~~~~  397 (520)
                      ++     ++.+.+........  +++....+++..+|+. ....+++..+++.++++.+.+.|.+.|+.+ ..+ ..+.+
T Consensus       260 ~~-----~l~~~l~~~~~~~~--~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~  330 (409)
T 2gb3_A          260 NE-----ELISHAMKLAQGRL--APPLLEQIGSVGLLNL-DDSFFDFVRETYRERVETVLKKLEEHGLKRFTKP-SGAFY  330 (409)
T ss_dssp             CH-----HHHHHHHHHHHHSC--CCCHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCC-SBSSE
T ss_pred             cH-----HHHHHHHHHHhccC--CCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHcCceeeeCC-CeeEE
Confidence            73     35555443222222  3344444444445543 122346777888899999999998888877 443 23455


Q ss_pred             EEEEecCCCCCHHHHHHHHhhc------CeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          398 VLVDLRPMGIDGARVEKILDMA------SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       398 ~~vd~~~~g~~~~~~~~~L~~~------gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +++++.  +.+..++.+.|.+.      ||.+..+...+......++++||+++      .++++++++++.|.++++.
T Consensus       331 ~~~~~~--~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~------~~~e~i~~~~~~l~~~l~~  401 (409)
T 2gb3_A          331 ITAELP--VEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV------LEKDLLSRAIDVLMEGLKM  401 (409)
T ss_dssp             EEEECS--SSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC------SCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeC--CCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC------CCHHHHHHHHHHHHHHHHH
Confidence            666774  45677777777655      99986432111101123678999865      3579999999999988764

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.93  E-value=1.5e-24  Score=228.15  Aligned_cols=337  Identities=16%  Similarity=0.101  Sum_probs=225.0

Q ss_pred             ccceEecCCC------CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC-----CCCCCCcee
Q 010008           94 KSLELIASEN------FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN-----LDENKWGVN  162 (520)
Q Consensus        94 ~~i~Liasen------~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg-----~~~~~~~~~  162 (520)
                      +.|+|..+..      ++++.|++++...+......+|+..      ....+++    +.++++++     ++++    +
T Consensus        55 ~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~------~g~~~lr----~~la~~~~~~~~~~~~~----~  120 (427)
T 3dyd_A           55 TMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPS------IGFLSSR----EEIASYYHCPEAPLEAK----D  120 (427)
T ss_dssp             CCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSCCCT------TCCHHHH----HHHHHHHCBTTBCCCGG----G
T ss_pred             CEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCCCCCC------CCcHHHH----HHHHHHHhhcCCCCChH----H
Confidence            4588876542      5789999999988875433345331      1123444    56677777     5554    3


Q ss_pred             eecCC-hHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC-CCCCCCHHHHHHHhhh
Q 010008          163 VQPLS-GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAIL  240 (520)
Q Consensus       163 V~~~s-Gs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-~~~~iD~d~le~~i~~  240 (520)
                      |.+++ |++|+..++.++++|||+|++++|.|.++..        .+...|.  +++.+++++ +++.+|++++++.+++
T Consensus       121 v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~  190 (427)
T 3dyd_A          121 VILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKT--------LAESMGI--EVKLYNLLPEKSWEIDLKQLEYLIDE  190 (427)
T ss_dssp             EEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHTTC--EEEEEEEEGGGTTEECHHHHHSSCCT
T ss_pred             EEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHH--------HHHHcCC--EEEEEecccccCCCCCHHHHHHHhcc
Confidence            33444 5599999999999999999999998765431        2334455  555555543 3578999999999987


Q ss_pred             cCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--ccc---EEEeccCccc--C
Q 010008          241 FRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCD---VVTTTTHKSL--R  308 (520)
Q Consensus       241 ~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aD---iv~~S~hK~l--~  308 (520)
                       ++++|++..++||+  ..+   +++|+++|+++|+++|+|++|. ++...+....++.  ..|   +++.|+||++  +
T Consensus       191 -~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~-~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~  268 (427)
T 3dyd_A          191 -KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYG-DMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVP  268 (427)
T ss_dssp             -TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTT-TCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCG
T ss_pred             -CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCch-hhccCCCcCccHHHhCCCCcEEEEeeccccCCCc
Confidence             79999998888887  667   9999999999999999999954 4444332222221  222   6778999974  7


Q ss_pred             CCCceEEEeeCCCcch-hhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CC
Q 010008          309 GPRGGMIFFKKDPVLG-VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GY  386 (520)
Q Consensus       309 GprgG~I~~~~~~~~~-~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~  386 (520)
                      |+|.|+++++++.... .++.+.+......  ..+++....+++..+|+......+++..+++.++++.+.+.|++. |+
T Consensus       269 G~riG~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  346 (427)
T 3dyd_A          269 GWRLGWILIHDRRDIFGNEIRDGLVKLSQR--ILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGL  346 (427)
T ss_dssp             GGCCEEEEEECSTTSSHHHHHHHHHHHHHH--HCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTE
T ss_pred             CcceEEEEecCcchhhHHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            8889999998631100 1344333322111  123455555566666765333345778888999999999999885 88


Q ss_pred             EEecCCCCCeeEEEEecC----CCCCHHHHHHH-HhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHH
Q 010008          387 KLVSGGSDNHLVLVDLRP----MGIDGARVEKI-LDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA  461 (520)
Q Consensus       387 ~v~~~gt~~~~~~vd~~~----~g~~~~~~~~~-L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la  461 (520)
                      .++.+. ...++++.+..    .+.+..++.+. +++.||.+..+..++     .++++||++.      .+++++++++
T Consensus       347 ~~~~p~-~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~-----~~~~iRis~~------~~~e~i~~~l  414 (427)
T 3dyd_A          347 RPVRPS-GAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFE-----YPNFIRVVIT------VPEVMMLEAC  414 (427)
T ss_dssp             EEECCS-BTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGT-----CTTEEEEESC------SCHHHHHHHH
T ss_pred             eecCCC-eeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccC-----CCCeEEEEEC------CCHHHHHHHH
Confidence            876542 34556666642    12455555554 478999995432221     3579999853      4589999999


Q ss_pred             HHHHHHHHH
Q 010008          462 DFIHEGVEI  470 (520)
Q Consensus       462 ~~i~~~l~~  470 (520)
                      +.|.++++.
T Consensus       415 ~~l~~~l~~  423 (427)
T 3dyd_A          415 SRIQEFCEQ  423 (427)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.93  E-value=9e-25  Score=229.44  Aligned_cols=348  Identities=14%  Similarity=0.155  Sum_probs=218.6

Q ss_pred             ccceEecCCC-CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh-HHH
Q 010008           94 KSLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPA  171 (520)
Q Consensus        94 ~~i~Liasen-~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG-s~A  171 (520)
                      +.+.|..+++ ++|+.|++++...+.+.+  +||...|..+... .......++++++++|++++    +|.+++| ++|
T Consensus        18 ~~~~Ld~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~l~~~la~~~g~~~~----~v~~~~g~t~a   90 (432)
T 3a9z_A           18 RKVYMDYNATTPLEPEVIQAVTEAMKEAW--GNPSSSYVAGRKA-KDIINTARASLAKMIGGKPQ----DIIFTSGGTES   90 (432)
T ss_dssp             CCEECBTTTCCCCCHHHHHHHHHHHHHCC--SCTTCSSHHHHHH-HHHHHHHHHHHHHHHTCCGG----GEEEESCHHHH
T ss_pred             CcEEeeCCccCCCCHHHHHHHHHHHHHhc--CCCccCcHHHHHH-HHHHHHHHHHHHHHcCCCcC----eEEEeCChHHH
Confidence            4567766554 689999999998886533  5666444333222 23334566899999999765    3444666 599


Q ss_pred             HHHHHHhhC--------CCCCEEEEcCCCCCccc-------cccccc--cccccccccceEEEEEcccCCCCCCCCHHHH
Q 010008          172 NFEVYTAIL--------KPHDRIMGLDLPHGGHL-------SHGFMT--PKRRVSGTSIYFESMPYRLDESTGLVDYDML  234 (520)
Q Consensus       172 ~~~~l~all--------~pGD~Vl~~~~~~~ghl-------s~g~~~--~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~l  234 (520)
                      +.+++.+++        +|||+|++++|.|.++-       +|....  ........|.  +++.++++++++.+|+++|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~--~v~~v~~~~~~~~~d~~~l  168 (432)
T 3a9z_A           91 NNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVA--EVTFVPVSKVNGQVEVEDI  168 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSC--EEEEECCCTTTSSCCHHHH
T ss_pred             HHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCc--EEEEEecCcccCCcCHHHH
Confidence            999998886        59999999998875431       011000  0000011344  6667777644678999999


Q ss_pred             HHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhC----------CEEEEechhhcccccccccCCCCC--cccEEE
Q 010008          235 EKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVG----------ALLMMDMAHISGLVAASVVADPFK--YCDVVT  300 (520)
Q Consensus       235 e~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g----------~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~  300 (520)
                      ++++++ ++++|+++.++||+  ..|+++|.++|+++|          ++|++|++|..|...     ..+.  ++|+++
T Consensus       169 ~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~-----~~~~~~~~d~~~  242 (432)
T 3a9z_A          169 LAAVRP-TTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRR-----VDVEDLGVDFLT  242 (432)
T ss_dssp             HHTCCT-TEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSC-----CCHHHHCCSEEE
T ss_pred             HHhccC-CceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcc-----cChhhcCCCEEE
Confidence            999987 89999999888876  789999999999999          999999998765321     1121  579999


Q ss_pred             eccCcccCCCCceEEEeeCCCcchhhH-HHhhcccCCC------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010008          301 TTTHKSLRGPRGGMIFFKKDPVLGVEL-ESAINNAVFP------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN  373 (520)
Q Consensus       301 ~S~hK~l~GprgG~I~~~~~~~~~~~l-~~~i~~~~~p------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~n  373 (520)
                      +|+||++ ||+.|+++++++      . ...+....+.      ...++++...++++..+++... .++++..+++.++
T Consensus       243 ~s~~K~~-g~~~G~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~-~~~~~~~~~~~~~  314 (432)
T 3a9z_A          243 IVGHKFY-GPRIGALYVRGV------GKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVS-ENCETYEAHMRDI  314 (432)
T ss_dssp             EEGGGTT-CCSCEEEEETTB------TTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             EehhHhc-CCcceEEEEccc------cccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHH-hhHHHHHHHHHHH
Confidence            9999986 799999999873      2 2223221111      1135567777777777777654 3567788889999


Q ss_pred             HHHHHHHHHH-CCCEEe--cC--C-C-CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCC--CCCC----------CCC
Q 010008          374 CRALASRLVE-LGYKLV--SG--G-S-DNHLVLVDLRPMGIDGARVEKILDMASITLNKNS--VPGD----------KSA  434 (520)
Q Consensus       374 a~~l~~~L~~-~G~~v~--~~--g-t-~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~--~Pg~----------~~~  434 (520)
                      ++++.+.|.+ .|+.+.  .+  + . ...++.+.+...+.++..+.+.|  .+|.++.+.  .++.          .+-
T Consensus       315 ~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~G~~~~~~~~~~~~~~l~~~g~  392 (432)
T 3a9z_A          315 RDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQC--QTLLASVGASCHSDHEDRPSPVLLSCGI  392 (432)
T ss_dssp             HHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHC--SSEECBSSCGGGGGGTTSCCHHHHHTTC
T ss_pred             HHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHh--cCeEEeccccccCCCCCCccHHHHhcCC
Confidence            9999999987 466543  21  1 1 12234445543334555555544  366665431  1110          000


Q ss_pred             ---CCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          435 ---LVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       435 ---~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                         ...++|||+++..+    +++|++++++.|+++++.
T Consensus       393 ~~~~~~~~iRis~~~~~----t~eei~~~~~~l~~~~~~  427 (432)
T 3a9z_A          393 PVDVARNAVRLSVGRST----TRAEVDLIVQDLKQAVNQ  427 (432)
T ss_dssp             CHHHHTTEEEEECCTTC----CHHHHHHHHHHHHHHHHH
T ss_pred             CccccCceEEEEcCCCC----CHHHHHHHHHHHHHHHHH
Confidence               01378999987544    489999999999988753

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.93  E-value=8.6e-25  Score=226.47  Aligned_cols=335  Identities=14%  Similarity=0.135  Sum_probs=224.1

Q ss_pred             ccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHH-HHHHHHHHHHHHcC--CCCCCCceeeecCCh
Q 010008           94 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDE-LETLCQKRALAAFN--LDENKWGVNVQPLSG  168 (520)
Q Consensus        94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~-lE~~a~~~~~~lfg--~~~~~~~~~V~~~sG  168 (520)
                      +.|+|..+++  ..++.|.+++...+.+. ..+|+.     +   ..+ +++...+++.+.+|  ++++    +|.+++|
T Consensus        29 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~-----~---~~~~lr~~la~~l~~~~g~~~~~~----~v~~t~g   95 (390)
T 1d2f_A           29 DLLPFTISDMDFATAPCIIEALNQRLMHG-VFGYSR-----W---KNDEFLAAIAHWFSTQHYTAIDSQ----TVVYGPS   95 (390)
T ss_dssp             -CEECCSSSCSSCCCHHHHHHHHHHHTTC-CCCCCC-----S---CCHHHHHHHHHHHHHHSCCCCCGG----GEEEESC
T ss_pred             CeeEeeecCCCCCCCHHHHHHHHHHHhCC-CCCCCC-----C---ChHHHHHHHHHHHHHhcCCCCCHH----HEEEcCC
Confidence            5678876665  36799999998887532 223432     1   234 66566677777888  4454    4555666


Q ss_pred             H-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC--CCCCCHHHHHHHhhhcCCcE
Q 010008          169 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--TGLVDYDMLEKTAILFRPKL  245 (520)
Q Consensus       169 s-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~--~~~iD~d~le~~i~~~~pkl  245 (520)
                      + +|+.+++.++++|||+|++.+|.|.++..        .+...|.  +++.++++++  ++.+|+++|++++++.++++
T Consensus        96 ~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~  165 (390)
T 1d2f_A           96 VIYMVSELIRQWSETGEGVVIHTPAYDAFYK--------AIEGNQR--TVMPVALEKQADGWFCDMGKLEAVLAKPECKI  165 (390)
T ss_dssp             HHHHHHHHHHHSSCTTCEEEEEESCCHHHHH--------HHHHTTC--EEEEEECEECSSSEECCHHHHHHHHTSTTEEE
T ss_pred             HHHHHHHHHHHhcCCCCEEEEcCCCcHHHHH--------HHHHCCC--EEEEeecccCCCccccCHHHHHHHhccCCCeE
Confidence            5 89999999999999999999988765421        2233454  5556666533  23599999999997557899


Q ss_pred             EEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC----c-ccEEEeccCccc--CCCCce
Q 010008          246 IIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----Y-CDVVTTTTHKSL--RGPRGG  313 (520)
Q Consensus       246 Ii~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~----~-aDiv~~S~hK~l--~GprgG  313 (520)
                      |+++.++||+  ..+   +++|+++|+++|++||+|++|... ...+....++.    . .|. +.|+||++  +|.|.|
T Consensus       166 v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G  243 (390)
T 1d2f_A          166 MLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDM-VWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGA  243 (390)
T ss_dssp             EEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTC-BCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCE
T ss_pred             EEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhhe
Confidence            9888888886  444   889999999999999999997643 33332111211    1 277 99999987  577889


Q ss_pred             EEEeeCCCcchhhHHHhhcccCC-CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-C-CCEEec
Q 010008          314 MIFFKKDPVLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-L-GYKLVS  390 (520)
Q Consensus       314 ~I~~~~~~~~~~~l~~~i~~~~~-p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~-G~~v~~  390 (520)
                      +++++++     ++.+.+..... ....++++....++...+++.. ...+++..+++.++++.+.+.|.+ . |+.++.
T Consensus       244 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  317 (390)
T 1d2f_A          244 YGIIENS-----SSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG-APWLDALRIYLKDNLTYIADKMNAAFPELNWQI  317 (390)
T ss_dssp             EEEECSH-----HHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCC
T ss_pred             EEEECCH-----HHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEec
Confidence            9998643     56665544322 1112344555555555566642 223467778888899999999987 3 777654


Q ss_pred             CCCCCeeEEEEecCCCCCHHHHHHHHh-hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          391 GGSDNHLVLVDLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       391 ~gt~~~~~~vd~~~~g~~~~~~~~~L~-~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      + ..+.++++++...+++..++.+.|. +.||.+..+...+   +..++++||+...      +++++++..+.|.++++
T Consensus       318 ~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~---~~~~~~~Ris~~~------~~~~l~~~l~~l~~~l~  387 (390)
T 1d2f_A          318 P-QSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYG---EEGRGFVRLNAGC------PRSKLEKGVAGLINAIR  387 (390)
T ss_dssp             C-SBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGC---GGGTTEEEEECCS------CHHHHHHHHHHHHHHHH
T ss_pred             C-CccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccC---CCCCCeEEEEecC------CHHHHHHHHHHHHHHHH
Confidence            3 2345556787543356777777776 7899995432111   1235789999763      36888888888887765

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.93  E-value=7.9e-25  Score=225.12  Aligned_cols=328  Identities=15%  Similarity=0.049  Sum_probs=220.1

Q ss_pred             hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh-H
Q 010008           93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-S  169 (520)
Q Consensus        93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG-s  169 (520)
                      .+.|+|..+++.  .++.+.+++...+.+. ..+|+.      .....++++...+++.+.+|.+.+.  -+|.+++| +
T Consensus        29 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~------~~~~~~l~~~la~~~~~~~g~~~~~--~~v~~~~g~~   99 (370)
T 2z61_A           29 KKVIHLEIGEPDFNTPKPIVDEGIKSLKEG-KTHYTD------SRGILELREKISELYKDKYKADIIP--DNIIITGGSS   99 (370)
T ss_dssp             CCCEECCCCSCSSCCCHHHHHHHHHHHHTT-CCSCCC------TTCCHHHHHHHHHHHHHHSSCCCCG--GGEEEESSHH
T ss_pred             CCEEEccCCCCCCCCCHHHHHHHHHHHHcC-ccCCCC------CCCCHHHHHHHHHHHHHHhCCCCCh--hhEEECCChH
Confidence            356888877753  5789999998887542 123332      1123466666667777777754221  13444555 5


Q ss_pred             HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 010008          170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  249 (520)
Q Consensus       170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~  249 (520)
                      +|+.+++.++++|||+|++.+|.|.++..        .+...|.  +++.++       +|++++++++++ ++++|+++
T Consensus       100 ~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~v~-------~d~~~l~~~l~~-~~~~v~~~  161 (370)
T 2z61_A          100 LGLFFALSSIIDDGDEVLIQNPCYPCYKN--------FIRFLGA--KPVFCD-------FTVESLEEALSD-KTKAIIIN  161 (370)
T ss_dssp             HHHHHHHHHHCCTTCEEEEESSCCTHHHH--------HHHHTTC--EEEEEC-------SSHHHHHHHCCS-SEEEEEEE
T ss_pred             HHHHHHHHHhcCCCCEEEEeCCCchhHHH--------HHHHcCC--EEEEeC-------CCHHHHHHhccc-CceEEEEc
Confidence            99999999999999999999998865421        2233454  555543       789999999987 89999998


Q ss_pred             CCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCC--CC---CcccEEEeccCccc--CCCCceEEEeeCC
Q 010008          250 ASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PF---KYCDVVTTTTHKSL--RGPRGGMIFFKKD  320 (520)
Q Consensus       250 ~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~--p~---~~aDiv~~S~hK~l--~GprgG~I~~~~~  320 (520)
                      .++||+  ..+.+ |.++|+++|+++|+|++|..+ ...+...+  .+   .+.|++++|+||++  +|.|.|++++++ 
T Consensus       162 ~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-  238 (370)
T 2z61_A          162 SPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGL-VYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISND-  238 (370)
T ss_dssp             SSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTC-BSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCH-
T ss_pred             CCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhc-ccCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECH-
Confidence            888875  78888 999999999999999997653 33221111  11   14689999999998  567789999988 


Q ss_pred             CcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEE
Q 010008          321 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV  400 (520)
Q Consensus       321 ~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~v  400 (520)
                           ++.+.+........ ++++....+++..+|+.......++..+++.++++.+.+.|.+.|+++..+. .++++++
T Consensus       239 -----~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~  311 (370)
T 2z61_A          239 -----EIIEAILKLQQNLF-ISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFGWEVNNPI-GAYYVFP  311 (370)
T ss_dssp             -----HHHHHHHHHHHHHT-SSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCCC-BTTEECC
T ss_pred             -----HHHHHHHHHHhhcc-cCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCC-cceEEEE
Confidence                 66666544322221 2333444444444454311223466778888999999999988888775432 3455566


Q ss_pred             EecCCCCCHHHHHHHHh-hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          401 DLRPMGIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       401 d~~~~g~~~~~~~~~L~-~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ++..   +..++.+.|. ++||.+..+...+   ...++++||++.      .+++++++.++.|.++++
T Consensus       312 ~~~~---~~~~~~~~l~~~~gi~v~~g~~f~---~~~~~~~Ri~~~------~~~~~i~~~~~~l~~~l~  369 (370)
T 2z61_A          312 NIGE---DGREFAYKLLKEKFVALTPGIGFG---SKGKNYIRISYA------NSYENIKEGLERIKEFLN  369 (370)
T ss_dssp             BCSS---CHHHHHHHHHHHHCEECEEGGGGC---GGGSSBEEEECC------SCHHHHHHHHHHHHHHHC
T ss_pred             ecCC---CHHHHHHHHHHhCCEEEeCchhhC---CCCCCEEEEEEe------CCHHHHHHHHHHHHHHHh
Confidence            6643   5667777775 8999995432111   112578999976      247899999998887653

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.93  E-value=3.3e-25  Score=231.38  Aligned_cols=338  Identities=15%  Similarity=0.103  Sum_probs=225.3

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      +.|+|..+++.  .++.|++++...+.+....+|+..   .|   ..++++...+++++.+|++.+.. -+|.+++|+ +
T Consensus        48 ~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~---~g---~~~lr~~ia~~~~~~~g~~~~~~-~~v~~t~G~~~  120 (404)
T 2o1b_A           48 PLINMAVGIPDGPTPQGIIDHFQKALTIPENQKYGAF---HG---KEAFKQAIVDFYQRQYNVTLDKE-DEVCILYGTKN  120 (404)
T ss_dssp             CCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCCT---TC---CHHHHHHHHHHHHHHHCCCCCTT-TSEEEESSHHH
T ss_pred             CEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCCC---CC---CHHHHHHHHHHHHHHhCCCCCCc-ccEEEcCCcHH
Confidence            45788777754  578999999887743212234321   11   24566666677777779752100 034446665 8


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  250 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~  250 (520)
                      |+.+++.++++|||+|++.+|.|.++..        .+...|.  +++.++++++++.+|+++|++++++ ++++|+++.
T Consensus       121 al~~~~~~l~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~l~~  189 (404)
T 2o1b_A          121 GLVAVPTCVINPGDYVLLPDPGYTDYLA--------GVLLADG--KPVPLNLEPPHYLPDWSKVDSQIID-KTKLIYLTY  189 (404)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCSSHHH--------HHHHTTC--EEEEEECCTTTCCCCGGGSCHHHHH-HEEEEEECS
T ss_pred             HHHHHHHHhcCCCCEEEEcCCCchhHHH--------HHHHCCC--EEEEeccCcccCcCCHHHHHHhhcc-CceEEEEcC
Confidence            9999999999999999999998765431        2233454  5666666643456899999998876 799999988


Q ss_pred             CCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-----cccEEEeccCccc--CCCCceEEEee
Q 010008          251 SAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCDVVTTTTHKSL--RGPRGGMIFFK  318 (520)
Q Consensus       251 s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-----~aDiv~~S~hK~l--~GprgG~I~~~  318 (520)
                      ++||+  ..   ++++|.++|+++|++||+|++|..+ ...+...+.+.     ..+++++|+||++  +|+|.|+++++
T Consensus       190 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~  268 (404)
T 2o1b_A          190 PNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAF-GFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGN  268 (404)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTC-BSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEEC
T ss_pred             CCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhc-ccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeEecC
Confidence            88876  44   3788999999999999999997643 33231111111     3468899999998  57788999997


Q ss_pred             CCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeE
Q 010008          319 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLV  398 (520)
Q Consensus       319 ~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~  398 (520)
                      +      ++.+.+....... ..+++....+++..+|+.. ...+++..+++.++++.+.+.|.+.|+++..+ ..+.++
T Consensus       269 ~------~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~g~~~  339 (404)
T 2o1b_A          269 K------DMIQALKKYQTHT-NAGMFGALQDAAIYALNHY-DDFLEEQSNVFKTRRDRFEAMLAKADLPFVHA-KGGIYV  339 (404)
T ss_dssp             H------HHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCEECC-CBSSEE
T ss_pred             H------HHHHHHHHHHhhc-cCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhcCCeecCC-CcceEE
Confidence            7      6666654432111 1233444444444566543 23456777888889999999998888887654 234557


Q ss_pred             EEEecCCCCCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          399 LVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       399 ~vd~~~~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ++++. .+++..++.+.| ++.||.+..+...+   ...++++||++..      ++++++++++.|.++++
T Consensus       340 ~~~~~-~~~~~~~l~~~l~~~~gi~v~~g~~f~---~~~~~~iRis~~~------~~e~l~~~l~~l~~~l~  401 (404)
T 2o1b_A          340 WLETP-PGYDSEQFEQFLVQEKSILVAPGKPFG---ENGNRYVRISLAL------DDQKLDEAAIRLTELAY  401 (404)
T ss_dssp             EEECC-TTCCHHHHHHHHHHHHCEECEESGGGC---GGGTTEEEEECCS------CTTHHHHHHHHHHGGGG
T ss_pred             EEeCC-CCCCHHHHHHHHHHHCCEEEeCchhhC---cCCCCeEEEEEcC------CHHHHHHHHHHHHHHHH
Confidence            77774 355666666665 57899995432111   1135789999763      36788888888876654

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.93  E-value=6e-24  Score=225.23  Aligned_cols=339  Identities=9%  Similarity=0.001  Sum_probs=227.1

Q ss_pred             CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCC--CceeeecCChHHHHHHHHHhhC
Q 010008          103 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENK--WGVNVQPLSGSPANFEVYTAIL  180 (520)
Q Consensus       103 n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~--~~~~V~~~sGs~A~~~~l~all  180 (520)
                      .+.++.+.+++.+.+..... +      |...+...++|+.+++++++++|++.+.  ...-+...+|++||+.++.++.
T Consensus        52 ~~~~~~v~e~~~~a~~~~~~-~------~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~  124 (452)
T 2dgk_A           52 TWDDENVHKLMDLSINKNWI-D------KEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMK  124 (452)
T ss_dssp             CCCCHHHHHHHHHTTTCBTT-C------TTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhccCCC-C------hhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHH
Confidence            35678899999877643211 1      1122446688888999999999998753  1012334556699999988875


Q ss_pred             C--------CC-----CEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 010008          181 K--------PH-----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII  247 (520)
Q Consensus       181 ~--------pG-----D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi  247 (520)
                      +        +|     |+|++++ .|...   .     +.+...|.  +++.++++++++.+|+++|++++++ +|++|+
T Consensus       125 ~~~~~~~~~~G~~~~~~~vi~~~-~h~~~---~-----~~~~~~G~--~v~~v~~~~~~~~~d~~~l~~~i~~-~t~~v~  192 (452)
T 2dgk_A          125 WRWRKRMEAAGKPTDKPNLVCGP-VQICW---H-----KFARYWDV--ELREIPMRPGQLFMDPKRMIEACDE-NTIGVV  192 (452)
T ss_dssp             HHHHHHHHHTTCCCSCCEEEESS-CCHHH---H-----HHHHHTTC--EEEECCCBTTBCSCCHHHHHHHCCT-TEEEEE
T ss_pred             HHHHHHHHhcCCCCCCcEEEECC-CcHHH---H-----HHHHHcCc--eEEEEecCCCCCeECHHHHHHHHhh-CCEEEE
Confidence            4        66     5888876 54321   1     23344565  6777777754689999999999987 899999


Q ss_pred             EcCCCCCC--CCCHHHHHHHHHHh------CCEEEEechhhccccc--ccccCCC--CCcccEEEeccCcccC-CCCceE
Q 010008          248 AGASAYPR--DFDYPRMRQIADAV------GALLMMDMAHISGLVA--ASVVADP--FKYCDVVTTTTHKSLR-GPRGGM  314 (520)
Q Consensus       248 ~~~s~~p~--~~d~~~i~~ia~~~------g~~li~D~Ah~~gli~--~~~~~~p--~~~aDiv~~S~hK~l~-GprgG~  314 (520)
                      ++.++|++  ..|+++|.++|+++      |+++++|+||..+...  .+..+..  ..++|++++++||++. +++.|+
T Consensus       193 ~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~  272 (452)
T 2dgk_A          193 PTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGW  272 (452)
T ss_dssp             CBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEE
T ss_pred             EEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeEE
Confidence            98887775  78999999999996      9999999997655431  1111111  2379999999999874 456699


Q ss_pred             EEeeCCCcchhhHH-Hhhcc-cCCC-------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-
Q 010008          315 IFFKKDPVLGVELE-SAINN-AVFP-------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-  384 (520)
Q Consensus       315 I~~~~~~~~~~~l~-~~i~~-~~~p-------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-  384 (520)
                      ++++++     ++. +.+.. ..+.       +..++......+++..+++.+...++++..++..++++++.+.|.+. 
T Consensus       273 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~  347 (452)
T 2dgk_A          273 VIWRDE-----EALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLG  347 (452)
T ss_dssp             EEESSG-----GGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             EEEcCH-----HHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999763     222 22211 1111       12334333344455556655444567888899999999999999885 


Q ss_pred             CCEEecCC---CCCeeEEEEecCC---CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHH
Q 010008          385 GYKLVSGG---SDNHLVLVDLRPM---GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFV  458 (520)
Q Consensus       385 G~~v~~~g---t~~~~~~vd~~~~---g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~  458 (520)
                      |++++.++   ...+++.+.+...   .++..++.+.|.+.||.+.....|...  .....+|+++...+    +++|++
T Consensus       348 ~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~--~~~~~lRis~~~~~----t~e~id  421 (452)
T 2dgk_A          348 PYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEA--TDIVVMRIMCRRGF----EMDFAE  421 (452)
T ss_dssp             SEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEECSTTC--TTCEEEEEECCTTC----CHHHHH
T ss_pred             CeEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeeeCCccc--CCeEEEEEEecCCC----CHHHHH
Confidence            58887542   2334555555432   245678888998999976432223221  12457999976544    489999


Q ss_pred             HHHHHHHHHHHHH
Q 010008          459 AIADFIHEGVEIT  471 (520)
Q Consensus       459 ~la~~i~~~l~~~  471 (520)
                      ++++.|++++...
T Consensus       422 ~li~~l~~~~~~~  434 (452)
T 2dgk_A          422 LLLEDYKASLKYL  434 (452)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887643

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.93  E-value=5.2e-25  Score=229.67  Aligned_cols=342  Identities=16%  Similarity=0.071  Sum_probs=223.7

Q ss_pred             hccceEecCCC-----CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCC
Q 010008           93 FKSLELIASEN-----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS  167 (520)
Q Consensus        93 ~~~i~Liasen-----~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~s  167 (520)
                      .+.|+|..+++     ..++.+.+++...+.+.+ .+|+.      .....++++...+++.+.+|+..+.  -+|.+++
T Consensus        38 ~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~------~~g~~~l~~~la~~l~~~~g~~~~~--~~v~~t~  108 (406)
T 1xi9_A           38 IKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGH-NYYGD------SEGLPELRKAIVEREKRKNGVDITP--DDVRVTA  108 (406)
T ss_dssp             CCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTC-CSCCC------TTCCHHHHHHHHHHHHHHHCCCCCG--GGEEEES
T ss_pred             CCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCC-CCCCC------CCCcHHHHHHHHHHHHHhcCCCCCH--HHEEEcC
Confidence            35688877766     467899999988875432 23332      1223466666667777777654321  1455566


Q ss_pred             hH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC-CCCCCCHHHHHHHhhhcCCcE
Q 010008          168 GS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKL  245 (520)
Q Consensus       168 Gs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-~~~~iD~d~le~~i~~~~pkl  245 (520)
                      |+ +|+.+++.++++|||+|++.+|.|.++.        ..+...|.  +++.+++++ +++.+|+++|++++++ ++++
T Consensus       109 g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~--------~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~  177 (406)
T 1xi9_A          109 AVTEALQLIFGALLDPGDEILVPGPSYPPYT--------GLVKFYGG--KPVEYRTIEEEDWQPDIDDIRKKITD-RTKA  177 (406)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEEEEESCCHHHH--------HHHHHTTC--EEEEEEEEGGGTSEECHHHHHHHCCT-TEEE
T ss_pred             ChHHHHHHHHHHhCCCCCEEEEcCCCCccHH--------HHHHHcCC--EEEEeecCCCcCCcCCHHHHHHhhCc-CceE
Confidence            65 9999999999999999999999875432        12234455  556666654 3467899999999987 8999


Q ss_pred             EEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCC--C-Ccc-cEEEeccCccc--CCCCceE
Q 010008          246 IIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP--F-KYC-DVVTTTTHKSL--RGPRGGM  314 (520)
Q Consensus       246 Ii~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p--~-~~a-Div~~S~hK~l--~GprgG~  314 (520)
                      |+++.++||+  ..+   +++|.++|+++|++||+|++|..+ ...+.....  + ... |++++|+||++  +|+|.|+
T Consensus       178 v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~  256 (406)
T 1xi9_A          178 IAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLM-TYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGY  256 (406)
T ss_dssp             EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTC-BSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEE
T ss_pred             EEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCcccc-ccCCCCCCHHHcCCCceEEEEeccccccCCCccEEEE
Confidence            9988888876  444   899999999999999999997653 322211110  1 235 78999999998  4778899


Q ss_pred             EE--eeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecC
Q 010008          315 IF--FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSG  391 (520)
Q Consensus       315 I~--~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~  391 (520)
                      ++  .+++.  ..++.+.+.......  .+++....+++..+|+.. ....++..+++.++++.+.+.|.+. |+.+..+
T Consensus       257 ~~~~~~~~~--~~~l~~~l~~~~~~~--~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  331 (406)
T 1xi9_A          257 MYFVDPENK--LSEVREAIDRLARIR--LCPNTPAQFAAIAGLTGP-MDYLKEYMKKLKERRDYIYKRLNEIPGISTTKP  331 (406)
T ss_dssp             EEEECTTCT--THHHHHHHHHHHHHT--CCSCSHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCC
T ss_pred             EEEecCchh--HHHHHHHHHHHHHhh--cCCCHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecC
Confidence            98  66510  002333333211111  122333344444556532 2335677788889999999999885 7776543


Q ss_pred             CCCCeeEEEEecCC-CCCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          392 GSDNHLVLVDLRPM-GIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       392 gt~~~~~~vd~~~~-g~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                       ..+.+.++++... +.+..++.+.| ++.||.+..+...+   ...++++||++.      .++++++++++.|.++++
T Consensus       332 -~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~---~~~~~~lRis~~------~~~~~i~~~~~~l~~~l~  401 (406)
T 1xi9_A          332 -QGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFG---EYGAGHFRAVFL------PPIEILEEAMDRFEKFMK  401 (406)
T ss_dssp             -CBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGC---GGGTTBEEEECC------SCHHHHHHHHHHHHHHHH
T ss_pred             -CeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcC---CCCCCEEEEEec------CCHHHHHHHHHHHHHHHH
Confidence             2344555566431 45677777666 48999985432111   112578999975      347999999999988875


Q ss_pred             H
Q 010008          470 I  470 (520)
Q Consensus       470 ~  470 (520)
                      .
T Consensus       402 ~  402 (406)
T 1xi9_A          402 E  402 (406)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.93  E-value=2.5e-25  Score=230.60  Aligned_cols=321  Identities=10%  Similarity=0.040  Sum_probs=210.7

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHH-HHHcC-CCCCCCceeeecCChHHHHHHHHHhh-C
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA-LAAFN-LDENKWGVNVQPLSGSPANFEVYTAI-L  180 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~-~~lfg-~~~~~~~~~V~~~sGs~A~~~~l~al-l  180 (520)
                      .+++.+++++...+.+.+        |+...+..+++|    +.+ ++++| .+.     .|.++||++|+.+++.++ +
T Consensus        13 ~~~~~i~~a~~~~~~~~~--------~~~~~~~~~~l~----~~~~a~~~g~~~~-----~v~~~sgt~al~~al~~l~~   75 (377)
T 3ju7_A           13 VPVIEYLDELKEIDASHI--------YTNYGPINQRFE----QTIMSGFFQNRGA-----VTTVANATLGLMAAIQLKKR   75 (377)
T ss_dssp             CCGGGGHHHHHHHHHHTC--------CSSSCHHHHHHH----HHHHHHTSTTCSE-----EEEESCHHHHHHHHHHHHSC
T ss_pred             CCcHHHHHHHHHHHHcCC--------cccCCHHHHHHH----HHHHHHHhCCCCe-----EEEeCCHHHHHHHHHHHcCC
Confidence            467888899888876543        111124456666    567 88999 332     466789999999999998 9


Q ss_pred             CCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHh-hhcC--CcEEEEcCCCCCCCC
Q 010008          181 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTA-ILFR--PKLIIAGASAYPRDF  257 (520)
Q Consensus       181 ~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i-~~~~--pklIi~~~s~~p~~~  257 (520)
                      +|||+|+++++.|.++..        .+...|.  +++.++++++++.+|++++++++ ++ +  ||+|+..++ ++...
T Consensus        76 ~~Gd~Vi~~~~~~~~~~~--------~~~~~G~--~~~~v~~~~~~~~~d~~~l~~~i~~~-~~~tk~v~~~~~-~G~~~  143 (377)
T 3ju7_A           76 KKGKYALMPSFTFPATPL--------AAIWCGL--EPYFIDISIDDWYMDKTVLWDKIEEL-KEEVAIVVPYAT-FGSWM  143 (377)
T ss_dssp             TTCCEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTCSBCHHHHHHHHHHH-GGGEEEECCBCG-GGBCC
T ss_pred             CCcCEEEECCCCcHHHHH--------HHHHcCC--EEEEEecCCccCCcCHHHHHHHHhcC-CCCceEEEEECC-CCCcc
Confidence            999999999998765431        2344565  77788887678899999999988 45 6  888875432 34578


Q ss_pred             CHHHHHHHHHHhCCEEEEechhhcccccccccC-CCCCcccEEEec--cCcccCCCCceEEEeeCCCcchhhHHHhhccc
Q 010008          258 DYPRMRQIADAVGALLMMDMAHISGLVAASVVA-DPFKYCDVVTTT--THKSLRGPRGGMIFFKKDPVLGVELESAINNA  334 (520)
Q Consensus       258 d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~-~p~~~aDiv~~S--~hK~l~GprgG~I~~~~~~~~~~~l~~~i~~~  334 (520)
                      |+++|.++|+ +|++|++|++|..|....+... ..  .+|+.++|  .||++.++.||+++++++     ++.++++..
T Consensus       144 ~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~--~~d~~~~S~~~~K~l~~g~gG~~~~~~~-----~l~~~~~~~  215 (377)
T 3ju7_A          144 NLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQD--FSGMIIYSFHATKPFGIGEGGLIYSKNE-----EDIQRIKRM  215 (377)
T ss_dssp             CCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTT--CSSEEEEECBTTSSSCCBSCEEEEESCH-----HHHHHHHHH
T ss_pred             CHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCC--CCcEEEEECCCCCcCCCCCcEEEEECCH-----HHHHHHHHH
Confidence            9999999999 9999999999988865443221 11  35665555  579998888899999875     566655433


Q ss_pred             CCCCC--------CC-CChH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCC---CEEecCCC--CCee-E
Q 010008          335 VFPGL--------QG-GPHN-HTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG---YKLVSGGS--DNHL-V  398 (520)
Q Consensus       335 ~~p~~--------~g-~p~~-~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G---~~v~~~gt--~~~~-~  398 (520)
                      ...+.        .| +..+ ...++++  +..+  ..++++.++..++++.+.+.|.+.+   +.+....+  ..|. +
T Consensus       216 ~~~g~~~~~~~~~~g~~~~~~~~~aa~~--~~~l--~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~  291 (377)
T 3ju7_A          216 GNFGFDTNRECTMMGFNCKMSEYAAAIG--IATM--KKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFM  291 (377)
T ss_dssp             TBTTBCTTSCBCSSCCBCCCCHHHHHHH--HHHH--HTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSE
T ss_pred             HhcCCCCCCceeeccccCCCCHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEE
Confidence            22221        01 1111 1222222  2222  3456778888899999999998854   22222111  2232 2


Q ss_pred             EEEecCCCCCHHHHHHHHhhcCeEEcCCCC-CCCC-CCC--------------CCCEEEEccCCccccCCCHHHHHHHHH
Q 010008          399 LVDLRPMGIDGARVEKILDMASITLNKNSV-PGDK-SAL--------------VPGGIRIGSPAMTTRGFSEKEFVAIAD  462 (520)
Q Consensus       399 ~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~-Pg~~-~~~--------------~~~giRig~~~~tt~g~~~~d~~~la~  462 (520)
                      .+.+. .+.+.+.+.+.|.+.||.++..+. |.+. +.+              ..+.||+.+..    .++++|++++++
T Consensus       292 ~~~~~-~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~----~~t~~di~~v~~  366 (377)
T 3ju7_A          292 PILCP-EEVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWE----GMTKEIVEQIVI  366 (377)
T ss_dssp             EEECC-TTSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCT----TCCHHHHHHHHH
T ss_pred             EEEeC-ChhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCC----CCCHHHHHHHHH
Confidence            33332 233578899999999999987652 3222 111              12358887653    467999999999


Q ss_pred             HHHHHHHH
Q 010008          463 FIHEGVEI  470 (520)
Q Consensus       463 ~i~~~l~~  470 (520)
                      .|.+++..
T Consensus       367 ~l~~~~~~  374 (377)
T 3ju7_A          367 CLGQKVVS  374 (377)
T ss_dssp             HHTC----
T ss_pred             HHHHHHhc
Confidence            99887764

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.93  E-value=1.5e-25  Score=238.34  Aligned_cols=293  Identities=13%  Similarity=0.137  Sum_probs=208.1

Q ss_pred             HHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCE---EEEcCCCCCccccccccccccccccccceE---E
Q 010008          144 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDR---IMGLDLPHGGHLSHGFMTPKRRVSGTSIYF---E  216 (520)
Q Consensus       144 a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~---Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~---~  216 (520)
                      +++++++++|++++    +|.+++|+ +++.+++.++++|||.   |++.++.|.+... .+.   ..+...|...   .
T Consensus       116 l~~~la~~~g~~~~----~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~-~~~---~~~~~~G~~~~~~~  187 (465)
T 3e9k_A          116 IVGLMKDIVGANEK----EIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHY-AIE---SQLQLHGLNIEESM  187 (465)
T ss_dssp             HHGGGHHHHTCCGG----GEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHH-HHH---HHHHHTTCCHHHHE
T ss_pred             HHHHHHHHcCCCcC----CEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHH-HHH---HHHHHcCCcceeee
Confidence            45789999999875    34446655 8999999999887765   9999998865321 010   0112233311   1


Q ss_pred             EEEcccCCCCCCCCHHHHHHHhhhc--CCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCC
Q 010008          217 SMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADP  292 (520)
Q Consensus       217 ~v~~~~d~~~~~iD~d~le~~i~~~--~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p  292 (520)
                      +...+.+ +++.+|+++|+++++++  ++++|++++++|++  ..|+++|.++|+++|+++++|++|..|.+..++... 
T Consensus       188 v~~~~~~-~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~-  265 (465)
T 3e9k_A          188 RMIKPRE-GEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDW-  265 (465)
T ss_dssp             EEECCCT-TCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH-
T ss_pred             EEEecCC-CCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhc-
Confidence            1122333 45789999999999732  78999999888875  789999999999999999999999887653322111 


Q ss_pred             CCcccEEEeccCccc-CCCCc-eEEEeeCCCcchhhHHHhhcccC-----------------C-------CCCCCCChHH
Q 010008          293 FKYCDVVTTTTHKSL-RGPRG-GMIFFKKDPVLGVELESAINNAV-----------------F-------PGLQGGPHNH  346 (520)
Q Consensus       293 ~~~aDiv~~S~hK~l-~Gprg-G~I~~~~~~~~~~~l~~~i~~~~-----------------~-------p~~~g~p~~~  346 (520)
                        ++|++++|+||++ .||.+ |+++++++      +.+.+....                 +       ....|+++..
T Consensus       266 --~~D~~~~s~~K~l~~gp~~~g~l~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~  337 (465)
T 3e9k_A          266 --GVDFACWCSYKYLNAGAGGIAGAFIHEK------HAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPIL  337 (465)
T ss_dssp             --TCCEEEECSSSTTCCCTTCCCEEEECGG------GTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHH
T ss_pred             --CCCEEEECcccccccCCCceEEEEEcHH------HHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHH
Confidence              5899999999999 48876 99998873      332222110                 0       0113578888


Q ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-----------CCCEEecCCC---CCeeEEEEecCCCCCHHHH
Q 010008          347 TIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-----------LGYKLVSGGS---DNHLVLVDLRPMGIDGARV  412 (520)
Q Consensus       347 ~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-----------~G~~v~~~gt---~~~~~~vd~~~~g~~~~~~  412 (520)
                      .++++.++++.+...+.++..++..++++++.+.|.+           .|++++.+..   ...++++.+.   .+..++
T Consensus       338 ~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~---~~~~~l  414 (465)
T 3e9k_A          338 LVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFS---VPNKDV  414 (465)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEEC---CTTCCH
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEec---CCHHHH
Confidence            8888888888765445688888999999999999987           6888876421   1345566664   245667


Q ss_pred             HHHHhhcCeEEcCCCCCCCCCCCCCCEEEEcc-CCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          413 EKILDMASITLNKNSVPGDKSALVPGGIRIGS-PAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       413 ~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~-~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      .+.|.+.||.++..         .++.||++. +.+++    ++|++++++.|+++++.
T Consensus       415 ~~~L~~~Gi~v~~~---------~~~~iRis~~~~~~t----~edi~~~~~~l~~~l~~  460 (465)
T 3e9k_A          415 FQELEKRGVVCDKR---------NPNGIRVAPVPLYNS----FHDVYKFTNLLTSILDS  460 (465)
T ss_dssp             HHHHHTTTEECEEE---------TTTEEEEBCCTTTCC----HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCEEEecC---------CCCEEEEeCcccCCC----HHHHHHHHHHHHHHHHh
Confidence            88888899998521         257999997 55554    89999999999988763

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.93  E-value=7.3e-25  Score=224.72  Aligned_cols=330  Identities=13%  Similarity=0.092  Sum_probs=217.2

Q ss_pred             ccceEecCCCCChHHHHHHHhhhhhccCCCCCC---CCCCCCcchhHHHHHHHHHHHHHHHcCCCCC-CCceeeecCCh-
Q 010008           94 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLP---GKRYYGGNEYIDELETLCQKRALAAFNLDEN-KWGVNVQPLSG-  168 (520)
Q Consensus        94 ~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p---~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~-~~~~~V~~~sG-  168 (520)
                      ..+.+.+++.++|+.|++++...+.+.+..|..   ...+  +..+ .++.+.+++++++++|++.+ +   .|..++| 
T Consensus         4 ~~~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~la~~~g~~~~~~---~i~~t~g~   77 (362)
T 2c0r_A            4 RAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHR--GAVY-EAVHNEAQARLLALLGNPTGYK---VLFIQGGA   77 (362)
T ss_dssp             CCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTT--SHHH-HHHHHHHHHHHHHHTTCCSSEE---EEEESSHH
T ss_pred             ceeeccCCCCCCCHHHHHHHHHHHhhhhhcCccccccCCC--cHHH-HHHHHHHHHHHHHHhCCCCCcE---EEEECCCc
Confidence            346777888899999999999887643222211   0111  2223 33334677899999999753 2   1334555 


Q ss_pred             HHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCC-CCCCHHHHHHHhhhcCCcEEE
Q 010008          169 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILFRPKLII  247 (520)
Q Consensus       169 s~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~-~~iD~d~le~~i~~~~pklIi  247 (520)
                      ++|+.+++.++++|||+|+++++.+.++   .+.   ..+...| ....++++.+.+. ..+|.++++  +++ +||+|+
T Consensus        78 t~a~~~~~~~l~~~gd~vl~~~~~~~~~---~~~---~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~-~t~~v~  147 (362)
T 2c0r_A           78 STQFAMIPMNFLKEGQTANYVMTGSWAS---KAL---KEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQD-NAAYLH  147 (362)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEEECSHHHH---HHH---HHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCT-TEEEEE
T ss_pred             hHHHHHHHHhcCCCCCeEEEEecCcHhH---HHH---HHHHHhC-CeEEEecccccccccCCCHHHcc--cCC-CcCEEE
Confidence            5999999999999999999887543222   110   0122234 3444443211112 246776654  555 799999


Q ss_pred             EcCCCCCC--C-CCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcc
Q 010008          248 AGASAYPR--D-FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVL  323 (520)
Q Consensus       248 ~~~s~~p~--~-~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~  323 (520)
                      +++++||+  . .|+++|      +|+++++|++|..|...     .++...|++++|+||++ ||.| |++++++    
T Consensus       148 ~~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~~-----~~~~~~d~~~~s~~K~~-g~~G~G~l~~~~----  211 (362)
T 2c0r_A          148 LTSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSRP-----FDLNQFGLVYAGAQKNL-GPSGVTVVIVRE----  211 (362)
T ss_dssp             EESEETTTTEECSSCCCC------TTSCEEEECTTTTTSSC-----CCGGGCSEEEEETTTTT-CCSSCEEEEEEG----
T ss_pred             EeCCcCccceeccccccc------CCCEEEEEChhhccCCc-----cchhHCcEEEEeccccc-cCcCcEEEEEcH----
Confidence            98888776  2 466665      89999999999876432     12333499999999999 5777 9999988    


Q ss_pred             hhhHHHhhccc---CC--------CCCCCCChHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHCC-C-EEe
Q 010008          324 GVELESAINNA---VF--------PGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELG-Y-KLV  389 (520)
Q Consensus       324 ~~~l~~~i~~~---~~--------p~~~g~p~~~~iaala~al~~~~~~-~~~~~~~~i~~na~~l~~~L~~~G-~-~v~  389 (520)
                        ++.+.+...   .+        ....++++...++++..|++.+... ++++..+++.++++++.+.|.+.| + ++.
T Consensus       212 --~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  289 (362)
T 2c0r_A          212 --DLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGC  289 (362)
T ss_dssp             --GGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEES
T ss_pred             --HHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccC
Confidence              444444321   00        0224577777888888888876543 568888999999999999999877 6 775


Q ss_pred             cCC--CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          390 SGG--SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       390 ~~g--t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      .+.  ....++++.+. .+.+..++.+.|++.||.+    .||...   .++|||++...+    +++|++++++.|+++
T Consensus       290 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~gi~~----~~g~~~---~~~iRis~~~~~----~~e~i~~l~~~l~~~  357 (362)
T 2c0r_A          290 VDVDSRSDMNITFRLA-SEELEKEFVKASEQEGFVG----LKGHRS---VGGLRASIYNAV----PYESCEALVQFMEHF  357 (362)
T ss_dssp             SCGGGBCSSEEEEECS-CHHHHHHHHHHHHHTTEES----CBCCTT---TCSEEEECCTTS----CHHHHHHHHHHHHHH
T ss_pred             CChHHcCCcEEEEEcC-CcchHHHHHHHHHHCCCee----ccCCCC---CCEEEEECCCCC----CHHHHHHHHHHHHHH
Confidence            321  12234555553 2334567888899999976    344321   457999986544    489999999999887


Q ss_pred             HH
Q 010008          468 VE  469 (520)
Q Consensus       468 l~  469 (520)
                      ++
T Consensus       358 ~~  359 (362)
T 2c0r_A          358 KR  359 (362)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.93  E-value=2.1e-24  Score=223.34  Aligned_cols=321  Identities=13%  Similarity=0.109  Sum_probs=213.5

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-CCCC
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPH  183 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al-l~pG  183 (520)
                      +++.+++++...+.... .+     |+.+ +..++++    +.+++++|.+.     .|.++||++|+.+++.++ ++||
T Consensus        15 ~~~~~~~a~~~~l~~~~-~~-----~~~~-~~~~~l~----~~la~~~~~~~-----~i~~~sGt~al~~~l~~l~~~~g   78 (388)
T 1b9h_A           15 YDDAERNGLVRALEQGQ-WW-----RMGG-DEVNSFE----REFAAHHGAAH-----ALAVTNGTHALELALQVMGVGPG   78 (388)
T ss_dssp             CCHHHHHHHHHHHHTSC-CB-----TTTC-SHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHHHHHHHTTCCTT
T ss_pred             CCHHHHHHHHHHHHcCC-ee-----ecCC-HHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHcCCCCc
Confidence            34899999988876521 01     2222 3345555    67888999863     466799999999999999 9999


Q ss_pred             CEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHH
Q 010008          184 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPR  261 (520)
Q Consensus       184 D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~  261 (520)
                      |+|++++++|.+...        .+...|.  +++.++++++++.+|+++|++++++ ++++|+   ++|++  ..|+++
T Consensus        79 d~Vi~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~---~~n~tG~~~~l~~  144 (388)
T 1b9h_A           79 TEVIVPAFTFISSSQ--------AAQRLGA--VTVPVDVDAATYNLDPEAVAAAVTP-RTKVIM---PVHMAGLMADMDA  144 (388)
T ss_dssp             CEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTCCBCHHHHHHHCCT-TEEEEC---CBCGGGCCCCHHH
T ss_pred             CEEEECCCccHHHHH--------HHHHcCC--EEEEEecCCCcCCCCHHHHHHhcCc-CceEEE---EeCCccCcCCHHH
Confidence            999999998765431        2334454  6777788766688999999999977 788887   44443  789999


Q ss_pred             HHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCceEEEeeCCCcchhhH--HHhhcccCCC--
Q 010008          262 MRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVEL--ESAINNAVFP--  337 (520)
Q Consensus       262 i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l--~~~i~~~~~p--  337 (520)
                      |.++|+++|++||+|++|..|....+.....+..+++.++|.||+++|+++|+++++++     .+  .+.+......  
T Consensus       145 i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~~i~~~S~s~~K~l~g~~~G~~~~~~~-----~~~~~~~~~~~~~~~~  219 (388)
T 1b9h_A          145 LAKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDG-----ETEKYETAFLRHSCGR  219 (388)
T ss_dssp             HHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTT-----CHHHHHHHHHHTBTTC
T ss_pred             HHHHHHHcCCEEEEecchhcCCccCCeecccccceEEEEccCCCcccCCCeEEEEECCH-----HHHHHHHHHHHHhCCC
Confidence            99999999999999999988776533211111113344455669998999999999874     24  3333211100  


Q ss_pred             ---------CCCCC---ChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCC-----CCCeeEE
Q 010008          338 ---------GLQGG---PHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGG-----SDNHLVL  399 (520)
Q Consensus       338 ---------~~~g~---p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~g-----t~~~~~~  399 (520)
                               ...|+   ++....+++   +.. . ..+++..+++.++++++.+.|.+. |+.+..+.     ...++++
T Consensus       220 ~~~~~~~~~~~~g~~~~~~~~~~a~~---~~~-~-~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~  294 (388)
T 1b9h_A          220 PRDDRRYFHKIAGSNMRLNEFSASVL---RAQ-L-ARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAM  294 (388)
T ss_dssp             CTTCSSCCCCSCCCBCBCBHHHHHHH---HHH-H-TTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEE
T ss_pred             CccCccceeecccccCCcCHHHHHHH---HHH-H-HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEE
Confidence                     01122   232222222   121 1 235667788888899999999885 88876421     1245677


Q ss_pred             EEecCCC-CCHHHHHHHHhhcCeEEcCCCCCCCCCC------------------C------CCCEEEEccCCccccCC-C
Q 010008          400 VDLRPMG-IDGARVEKILDMASITLNKNSVPGDKSA------------------L------VPGGIRIGSPAMTTRGF-S  453 (520)
Q Consensus       400 vd~~~~g-~~~~~~~~~L~~~gI~v~~~~~Pg~~~~------------------~------~~~giRig~~~~tt~g~-~  453 (520)
                      +.+...+ .+.+++.+.|.+.||.++.++.|.+..+                  +      ..+.|||++...    + +
T Consensus       295 ~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~----~~t  370 (388)
T 1b9h_A          295 FRIPGLTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVL----LAG  370 (388)
T ss_dssp             EECTTCCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGG----GSC
T ss_pred             EEeCCcCcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCC----CCC
Confidence            7764311 2456688888889999976543321100                  0      013589987643    4 5


Q ss_pred             HHHHHHHHHHHHHHHH
Q 010008          454 EKEFVAIADFIHEGVE  469 (520)
Q Consensus       454 ~~d~~~la~~i~~~l~  469 (520)
                      ++|++++++.|+++++
T Consensus       371 ~edi~~~~~~l~~~~~  386 (388)
T 1b9h_A          371 EPELHATAEIIADAVA  386 (388)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8999999999998775

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.93  E-value=4.1e-24  Score=219.11  Aligned_cols=313  Identities=15%  Similarity=0.146  Sum_probs=219.3

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhcc--CCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh-
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNK--YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-  168 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~--y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG-  168 (520)
                      +.|+|..++++  +++.|++++...+.+.  ...+||...       ..+++    +++++++|++++    +|.+++| 
T Consensus        27 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~-------~~~lr----~~la~~~g~~~~----~i~~t~g~   91 (360)
T 3hdo_A           27 SWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPSAS-------SQKLR----EVAGELYGFDPS----WIIMANGS   91 (360)
T ss_dssp             TSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCCSS-------CHHHH----HHHHHHHTCCGG----GEEEESSH
T ss_pred             ceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCCCc-------hHHHH----HHHHHHhCcCcc----eEEEcCCH
Confidence            56888888874  5799999999887653  022454311       13444    678888998775    3444555 


Q ss_pred             HHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEE
Q 010008          169 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA  248 (520)
Q Consensus       169 s~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~  248 (520)
                      ++|+.+++.++++|||+|++.+|.|.++..        .+...|.  +++.++++. ++.+  ++++   +..++|++++
T Consensus        92 ~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~-~~~~--~~l~---~~~~~~~v~i  155 (360)
T 3hdo_A           92 DEVLNNLIRAFAAEGEEIGYVHPSYSYYGT--------LAEVQGA--RVRTFGLTG-DFRI--AGFP---ERYEGKVFFL  155 (360)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEESSSCTHHHH--------HHHHHTC--EEEEECBCT-TSSB--TTCC---SSBCSSEEEE
T ss_pred             HHHHHHHHHHHhCCCCEEEEcCCChHHHHH--------HHHHCCC--EEEEeeCCC-CCCH--HHHH---hhcCCCEEEE
Confidence            499999999999999999999998765421        2333454  666777753 3444  4433   3336889999


Q ss_pred             cCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-----cccEEEeccCccc--CCCCceEEEeeC
Q 010008          249 GASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCDVVTTTTHKSL--RGPRGGMIFFKK  319 (520)
Q Consensus       249 ~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-----~aDiv~~S~hK~l--~GprgG~I~~~~  319 (520)
                      +.++||+  ..|.+++.++|+++|+++|+|++|.. +.  +.  .++.     ..+++++|+||++  +|.|.|++++++
T Consensus       156 ~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~-~~--~~--~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~  230 (360)
T 3hdo_A          156 TTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAE-FA--ES--NALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARP  230 (360)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGG-GS--SC--CCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCH
T ss_pred             eCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHh-hC--Cc--chhHHhccCCCEEEEecchHhhcCCccceeeEeeCH
Confidence            8888876  88999999999999999999999753 22  11  1111     2348889999996  678889999976


Q ss_pred             CCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEE
Q 010008          320 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVL  399 (520)
Q Consensus       320 ~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~  399 (520)
                            ++.+.+.....+   .+++....+++..+|+.  ...+++..+++.++++.+.+.|.+.|+.+..+  ...+++
T Consensus       231 ------~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~~~  297 (360)
T 3hdo_A          231 ------EVIAALDKIRDH---YNLDRLAQAACVAALRD--QAYLSECCRRIRETREWFTTELRSIGYDVIPS--QGNYLF  297 (360)
T ss_dssp             ------HHHHHHHHHSCS---CCSCHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHTTCEECCC--SSSEEE
T ss_pred             ------HHHHHHHHhCCC---CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCEEcCC--CccEEE
Confidence                  677776654332   23444455555556653  22357788889999999999999888887653  234566


Q ss_pred             EEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          400 VDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       400 vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +.+.  +.+..++.+.|.+.||.+...    .. +..++++||++.       +++|++++.+.++++.+
T Consensus       298 ~~~~--~~~~~~l~~~l~~~gi~v~~~----~~-~~~~~~iRis~~-------~~~e~~~l~~al~~~~~  353 (360)
T 3hdo_A          298 ATPP--DRDGKRVYDGLYARKVLVRHF----SD-PLLAHGMRISIG-------TREEMEQTLAALKEIGE  353 (360)
T ss_dssp             EECT--TCCHHHHHHHHHHTTEECBCC----CS-TTTTTSEEEECC-------CHHHHHHHHHHHHHHHC
T ss_pred             EECC--CCCHHHHHHHHHHCCEEEEEC----CC-CCCCCEEEEEcC-------CHHHHHHHHHHHHHHhc
Confidence            6553  457788889999999999543    22 223578999964       47999999999887654

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.93  E-value=6.7e-24  Score=220.86  Aligned_cols=338  Identities=16%  Similarity=0.042  Sum_probs=220.1

Q ss_pred             ccceEecCCC----CChHHHHHHHhhhhhccC--CCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceeeec
Q 010008           94 KSLELIASEN----FTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQP  165 (520)
Q Consensus        94 ~~i~Liasen----~~~~~V~ea~~s~l~~~y--~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V~~  165 (520)
                      +.|+|..+..    +.++.+.+++...+.+..  .. |+.      .....++++...+++.+.+|+  +++    +|.+
T Consensus        35 ~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~-y~~------~~~~~~l~~~la~~~~~~~g~~~~~~----~v~~  103 (407)
T 2zc0_A           35 KLISLAAGDPDPELIPRAVLGEIAKEVLEKEPKSVM-YTP------ANGIPELREELAAFLKKYDHLEVSPE----NIVI  103 (407)
T ss_dssp             CCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGGGGS-CCC------TTCCHHHHHHHHHHHHHHSCCCCCGG----GEEE
T ss_pred             ceEeCCCCCCCchhCCHHHHHHHHHHHHhhcccccc-CCC------CCCCHHHHHHHHHHHHHhcCCCCCcc----eEEE
Confidence            5678865432    256889999888775421  01 221      122356666666677777794  443    4556


Q ss_pred             CChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhh----h
Q 010008          166 LSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAI----L  240 (520)
Q Consensus       166 ~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~----~  240 (520)
                      ++|+ +|+.+++.++++|||+|++.+|.|.++.        ..+...|.  +++.+++++ ++ +|+++|+++++    +
T Consensus       104 t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~--------~~~~~~g~--~~~~v~~~~-~~-~d~~~l~~~l~~~~~~  171 (407)
T 2zc0_A          104 TIGGTGALDLLGRVLIDPGDVVITENPSYINTL--------LAFEQLGA--KIEGVPVDN-DG-MRVDLLEEKIKELKAK  171 (407)
T ss_dssp             ESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHH--------HHHHTTTC--EEEEEEEET-TE-ECHHHHHHHHHHHHHT
T ss_pred             ecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHH--------HHHHHcCC--EEEEcccCC-CC-CCHHHHHHHHHhhhcc
Confidence            7775 9999999999999999999998775532        12334554  566666664 33 99999999987    4


Q ss_pred             -cCCcEEE-EcCCCCCC--CCCHH---HHHHHHHHhCCEEEEechhhcccccccccCCCCC-----cccEEEeccCcccC
Q 010008          241 -FRPKLII-AGASAYPR--DFDYP---RMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCDVVTTTTHKSLR  308 (520)
Q Consensus       241 -~~pklIi-~~~s~~p~--~~d~~---~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-----~aDiv~~S~hK~l~  308 (520)
                       .++++|+ +..++||+  ..+.+   +|.++|+++|++||+|++|..+ ...+....++.     +.++++.|+||++.
T Consensus       172 ~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~  250 (407)
T 2zc0_A          172 GQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFM-RYEGGDIVPLKALDNEGRVIVAGTLSKVLG  250 (407)
T ss_dssp             TCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTS-BSSCSSCCCGGGGCSSCCEEEEEESTTTTC
T ss_pred             cCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCccc-ccCCCCCCChhhcCCCCCEEEEcccccccC
Confidence             2688874 56777775  66765   8999999999999999997643 33222111121     23478899999985


Q ss_pred             -CCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc-C-chhHHHHHHHHHHHHHHHHHHHHC-
Q 010008          309 -GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-S-PEFKVYQNKVVSNCRALASRLVEL-  384 (520)
Q Consensus       309 -GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~-~-~~~~~~~~~i~~na~~l~~~L~~~-  384 (520)
                       |.|+|++++++      ++.+.+.....+...+++... .++...+++... . ...++..+++.++++.+.+.|.+. 
T Consensus       251 ~G~r~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  323 (407)
T 2zc0_A          251 TGFRIGWIIAEG------EILKKVLMQKQPIDFCAPAIS-QYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHL  323 (407)
T ss_dssp             TTSCCEEEECCH------HHHHHHHHHHTTTTSSSCHHH-HHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCcceEEEecCH------HHHHHHHHHHHhhcCCCCHHH-HHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence             56889999986      677666543333323333333 333333454320 1 223556677788889999999773 


Q ss_pred             -CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhc-CeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHH
Q 010008          385 -GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIAD  462 (520)
Q Consensus       385 -G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~-gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~  462 (520)
                       |+.++.+. ...++++++. .+++..++.+.|.+. ||.+..+...+. ....++++||++...     +++|++++++
T Consensus       324 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~l~~~l~~~~gi~v~~g~~~~~-~~~~~~~iRis~~~~-----~~~~i~~~~~  395 (407)
T 2zc0_A          324 PNAEFTKPI-AGMFVMFFLP-EGADGISFANELMEREGVVVVPGKPFYT-DESGKNAIRLNFSRP-----SKEEIPIGIK  395 (407)
T ss_dssp             TTSCBCCCS-BSSEEEEECS-TTCCHHHHHHHHHHHTCEECBCSGGGCS-SSCCTTEEEEECSSS-----CTTHHHHHHH
T ss_pred             CCCEEecCC-CcEEEEEEcC-CCCCHHHHHHHHHHhCCeEEECchhccC-CCCCCCeEEEEeCCC-----CHHHHHHHHH
Confidence             67665432 3456777774 356777777777666 999964321111 111357899987643     4799999999


Q ss_pred             HHHHHHHH
Q 010008          463 FIHEGVEI  470 (520)
Q Consensus       463 ~i~~~l~~  470 (520)
                      .|.++++.
T Consensus       396 ~l~~~l~~  403 (407)
T 2zc0_A          396 KLAKLYKE  403 (407)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988754

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.93  E-value=2.5e-24  Score=223.10  Aligned_cols=353  Identities=14%  Similarity=0.092  Sum_probs=230.3

Q ss_pred             ccccChHHHHHHHHHHHHh-----hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHH
Q 010008           74 LGEADPEVCEIITKEKERQ-----FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQK  146 (520)
Q Consensus        74 l~~~d~~~~~~~~~e~~~~-----~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~  146 (520)
                      +..+.+..+..+.+...+.     ++.|+|..+++.  +++.|++++...+...  .+|+..   .|   ..++++...+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~~---~g---~~~lr~~la~   77 (396)
T 3jtx_A            6 LKQLKPYPFARLHEAMQGISAPEGMEAVPLHIGEPKHPTPKVITDALTASLHEL--EKYPLT---AG---LPELRQACAN   77 (396)
T ss_dssp             HHHCCSCHHHHHHHHTTTCCCCTTCCCEECSCCSCCSCCCHHHHHHHHHTGGGG--GSCCCT---TC---CHHHHHHHHH
T ss_pred             hccCCCChHHHHHHHHHhhhhccCCCeEEeCCcCCCCCCCHHHHHHHHHHhhhc--cCCCCC---CC---cHHHHHHHHH
Confidence            3444555444443333221     356888877753  6799999998877522  244431   12   2355666667


Q ss_pred             HHHHHcCCC---CCCCceeeecCChH-HHHHHHHHhhCCCC-----CEEEEcCCCCCccccccccccccccccccceEEE
Q 010008          147 RALAAFNLD---ENKWGVNVQPLSGS-PANFEVYTAILKPH-----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES  217 (520)
Q Consensus       147 ~~~~lfg~~---~~~~~~~V~~~sGs-~A~~~~l~all~pG-----D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~  217 (520)
                      ++.+.+|.+   +++   +|.+++|+ +|+.+++.++++||     |+|++.+|.|.++..        .+...|.  ++
T Consensus        78 ~l~~~~g~~~~~~~~---~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~--------~~~~~g~--~~  144 (396)
T 3jtx_A           78 WLKRRYDGLTVDADN---EILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEG--------ATLLGGG--EI  144 (396)
T ss_dssp             HHHHHTTTCCCCTTT---SEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHH--------HHHHTTC--EE
T ss_pred             HHHHhcCCCCCCCCC---eEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHH--------HHHHcCC--EE
Confidence            888888964   541   23445655 89999999999997     799999987754321        2334455  56


Q ss_pred             EEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCC
Q 010008          218 MPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP  292 (520)
Q Consensus       218 v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p  292 (520)
                      +.++++.+++.+|++++++++++ ++++|+++.++||+  .++   +++|.++|+++|+++|+|++|. ++...+..+.+
T Consensus       145 ~~v~~~~~g~~~d~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~~~~~  222 (396)
T 3jtx_A          145 HFANCPAPSFNPDWRSISEEVWK-RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYS-EIYFDGNKPLG  222 (396)
T ss_dssp             EEEECCTTTCCCCGGGSCHHHHH-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTT-TCCSTTCCCCC
T ss_pred             EEeecCCCCCccCHHHHHHhhcc-CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcccc-ccccCCCCCch
Confidence            66666655567999999999988 89999998888886  555   5558899999999999999965 33433311111


Q ss_pred             C----------CcccEEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcC
Q 010008          293 F----------KYCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS  360 (520)
Q Consensus       293 ~----------~~aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~  360 (520)
                      +          ...++++.|+||++  +|.|.|++++++      ++.+.+....... ..+++....+++..+++.  .
T Consensus       223 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~--~  293 (396)
T 3jtx_A          223 CLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDA------ELLKNFLLYRTYH-GSAMSIPVQRASIAAWDD--E  293 (396)
T ss_dssp             HHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECH------HHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHC--C
T ss_pred             HHhhhhhcccccCcEEEEeccccccCCcccceEEEEeCH------HHHHHHHHHHhhc-ccCCCHHHHHHHHHHhCC--H
Confidence            0          23568899999964  688889999877      6666654422111 123344444444445653  3


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHH-hhcCeEEcCCCCCCCC---CCCC
Q 010008          361 PEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDK---SALV  436 (520)
Q Consensus       361 ~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~---~~~~  436 (520)
                      ...++..+++.++++.+.+.|.+. +.+..+ ..++++|+++..  .+..++.+.| +++||.+..+..++..   ....
T Consensus       294 ~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~-~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~  369 (396)
T 3jtx_A          294 QHVIDNRRLYQEKFERVIPILQQV-FDVKLP-DASFYIWLKVPD--GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPG  369 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTT-SCCCCC-SSSSEEEEECTT--SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc-CCccCC-CeeEEEEEECCC--CCHHHHHHHHHHHCCEEEeCChHhCCcccccCCC
Confidence            345777788888889999988764 333333 235667778753  4566666555 7789999654322210   1234


Q ss_pred             CCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          437 PGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       437 ~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      .+++||++..      +++++++.++.|.+++
T Consensus       370 ~~~iRis~~~------~~~~i~~~l~~l~~~l  395 (396)
T 3jtx_A          370 EGYVRIALVA------DVATCVKAAEDIVSLY  395 (396)
T ss_dssp             TTEEEEECCS------CHHHHHHHHHHHHHHC
T ss_pred             CCeEEEEEcC------CHHHHHHHHHHHHHHh
Confidence            6799998652      5899999999887754

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.93  E-value=3e-24  Score=224.06  Aligned_cols=324  Identities=15%  Similarity=0.135  Sum_probs=220.2

Q ss_pred             cceEecCC-CCChHHHHHHHhhhhhccCCCCCCCCC-CC-Cc-chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHH
Q 010008           95 SLELIASE-NFTSRAVMEAVGSCLTNKYSEGLPGKR-YY-GG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP  170 (520)
Q Consensus        95 ~i~Liase-n~~~~~V~ea~~s~l~~~y~~G~p~~r-yy-~g-~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~  170 (520)
                      .+.|..++ .+.|+.|++++...+.+.|  |++... +| .+ .+..+    .+++++++++|++++++   +.+.+|++
T Consensus        29 ~~yld~~~~~~~~~~v~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~~----~l~~~la~~~g~~~~~v---~~~~g~t~   99 (416)
T 1qz9_A           29 VIYLDGNSLGARPVAALARAQAVIAEEW--GNGLIRSWNSAGWRDLSE----RLGNRLATLIGARDGEV---VVTDTTSI   99 (416)
T ss_dssp             CEECCTTTSCCCBTTHHHHHHHHHHTCC--CCCGGGHHHHTSGGGHHH----HHHHHHHTTTTCCTTSE---EECSCHHH
T ss_pred             eEeecCCCcCCCcHHHHHHHHHHHHHHH--hccCccccchhhHHHHHH----HHHHHHHHHcCCCcccE---EEeCChhH
Confidence            45665444 3678899999998886544  222110 11 11 12223    34578999999986532   22344558


Q ss_pred             HHHHHHHhhC------CCCCEEEEcC-CCCCccccccccccccccccc--cceEEEEEcccCCCCCCCCHHHHHHHhhhc
Q 010008          171 ANFEVYTAIL------KPHDRIMGLD-LPHGGHLSHGFMTPKRRVSGT--SIYFESMPYRLDESTGLVDYDMLEKTAILF  241 (520)
Q Consensus       171 A~~~~l~all------~pGD~Vl~~~-~~~~ghls~g~~~~~~~v~~~--g~~~~~v~~~~d~~~~~iD~d~le~~i~~~  241 (520)
                      ++.+++.+++      +|||+|++.+ +.|+++......    .....  |.  +++.+++        +++|++++++ 
T Consensus       100 al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~----~~~~~~~g~--~~~~v~~--------~~~l~~~i~~-  164 (416)
T 1qz9_A          100 NLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEG----LADMLQQGY--TLRLVDS--------PEELPQAIDQ-  164 (416)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHH----HHHHHCSSC--EEEEESS--------GGGHHHHCST-
T ss_pred             HHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHH----HHHHhcCCc--eEEEeCc--------HHHHHHHhCC-
Confidence            8877888776      8999755554 455433211000    00111  43  5555443        6888988887 


Q ss_pred             CCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCccc-CCCCc-eEE
Q 010008          242 RPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL-RGPRG-GMI  315 (520)
Q Consensus       242 ~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l-~Gprg-G~I  315 (520)
                      ++++|++++++||+  ..|+++|.++|+++|+++|+|++|..|....     ++.  ++|++++|+||++ .|+++ |++
T Consensus       165 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~-----~~~~~~~d~~~~s~~K~l~~g~~~~g~l  239 (416)
T 1qz9_A          165 DTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPV-----DLHQAGADYAIGCTYKYLNGGPGSQAFV  239 (416)
T ss_dssp             TEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCC-----CHHHHTCSEEEECSSSTTCCCTTCCCEE
T ss_pred             CceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCC-----ChhhcCCCEEEecCcccCCCCCCCeEEE
Confidence            89999999888875  7899999999999999999999987654321     122  4799999999997 57888 999


Q ss_pred             EeeCCCcchhhHHHhhcccCC----------------------CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010008          316 FFKKDPVLGVELESAINNAVF----------------------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN  373 (520)
Q Consensus       316 ~~~~~~~~~~~l~~~i~~~~~----------------------p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~n  373 (520)
                      ++++      ++.+++.....                      ....++++...++++..+++.....++++..+++.++
T Consensus       240 ~~~~------~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~  313 (416)
T 1qz9_A          240 WVSP------QLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLAL  313 (416)
T ss_dssp             EECT------TTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             EECH------HHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            9988      34443332110                      0123567777887877788877655678888999999


Q ss_pred             HHHHHHHHHHC----CCEEecCCC---CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCC
Q 010008          374 CRALASRLVEL----GYKLVSGGS---DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPA  446 (520)
Q Consensus       374 a~~l~~~L~~~----G~~v~~~gt---~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~  446 (520)
                      ++++.+.|.+.    |++++.+..   ..+++++.+.    +..++.+.|.+.||.+..         ..++.+||+++.
T Consensus       314 ~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~gi~~~~---------~~~~~lRis~~~  380 (416)
T 1qz9_A          314 TDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP----EGYAVIQALIDRGVIGDY---------REPRIMRFGFTP  380 (416)
T ss_dssp             HHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT----THHHHHHHHHTTTEECEE---------ETTTEEEEECCT
T ss_pred             HHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC----CHHHHHHHHHhCCcEecc---------CCCCeEEEeCcc
Confidence            99999999875    898876421   2455666653    367788888889998742         135789999763


Q ss_pred             -ccccCCCHHHHHHHHHHHHHHHHH
Q 010008          447 -MTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       447 -~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                       .    .+++|++++++.|.++++.
T Consensus       381 ~~----~t~~~i~~~~~~l~~~~~~  401 (416)
T 1qz9_A          381 LY----TTFTEVWDAVQILGEILDR  401 (416)
T ss_dssp             TT----CCHHHHHHHHHHHHHHHHH
T ss_pred             cC----CCHHHHHHHHHHHHHHHhc
Confidence             3    3489999999999998764

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.93  E-value=1.3e-24  Score=221.25  Aligned_cols=324  Identities=18%  Similarity=0.188  Sum_probs=207.7

Q ss_pred             cceEecCCC-CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHH
Q 010008           95 SLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  173 (520)
Q Consensus        95 ~i~Liasen-~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~  173 (520)
                      .|+|..+++ ++++.+++++...+...        ..|+..+...+++    +++++++|.+.     .+.+++|++|+.
T Consensus         5 ~i~~~~~~~~~p~~~~~~a~~~~~~~~--------~~y~~~~~~~~l~----~~la~~~g~~~-----~~~~~~gt~a~~   67 (347)
T 1jg8_A            5 MIDLRSDTVTKPTEEMRKAMAQAEVGD--------DVYGEDPTINELE----RLAAETFGKEA-----ALFVPSGTMGNQ   67 (347)
T ss_dssp             CEECSCGGGCCCCHHHHHHHHTCCCCC--------GGGTCCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHH
T ss_pred             EEEeccccCCCCCHHHHHHHhcCCCCC--------cccCCChHHHHHH----HHHHHHhCCce-----EEEecCcHHHHH
Confidence            467777665 46788999986543211        1122334455555    67888999863     355688999999


Q ss_pred             HHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc-----CCcEEEE
Q 010008          174 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIA  248 (520)
Q Consensus       174 ~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~-----~pklIi~  248 (520)
                      +++.++++|||+|+++++.|.+.+..+     ......|.  +++.+ .+ +++.+|+++|++++++.     ++|+|++
T Consensus        68 ~~~~~~~~~gd~Vl~~~~~~~~~~~~~-----~~~~~~g~--~~~~v-~~-~~~~~d~~~l~~~i~~~~~~~~~~~~v~~  138 (347)
T 1jg8_A           68 VSIMAHTQRGDEVILEADSHIFWYEVG-----AMAVLSGV--MPHPV-PG-KNGAMDPDDVRKAIRPRNIHFPRTSLIAI  138 (347)
T ss_dssp             HHHHHHCCTTCEEEEETTCHHHHSSTT-----HHHHHTCC--EEEEE-CE-ETTEECHHHHHHHSCCSCTTSCCEEEEEE
T ss_pred             HHHHHhcCCCCEEEEcCcchhhhcccc-----chhhccCe--EEEEe-cC-CCCccCHHHHHHHhccccccccCceEEEE
Confidence            999999999999999998765432111     01223454  55555 33 35678999999998752     6899999


Q ss_pred             cCCCCCC---CCC---HHHHHHHHHHhCCEEEEechhhcccc-cccccCCCC-CcccEEEeccCcccCCCCceEEEeeCC
Q 010008          249 GASAYPR---DFD---YPRMRQIADAVGALLMMDMAHISGLV-AASVVADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKD  320 (520)
Q Consensus       249 ~~s~~p~---~~d---~~~i~~ia~~~g~~li~D~Ah~~gli-~~~~~~~p~-~~aDiv~~S~hK~l~GprgG~I~~~~~  320 (520)
                      ++++||+   ..+   +++|.++|+++|++|++|++|..+.. ..+....++ .++|.+++|+||++.+|.||+++.++ 
T Consensus       139 ~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~-  217 (347)
T 1jg8_A          139 ENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDR-  217 (347)
T ss_dssp             ESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECH-
T ss_pred             eccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCCceEEEEcCH-
Confidence            8888764   444   57888999999999999999754321 112111111 15788888999999877666676665 


Q ss_pred             CcchhhHHHhhccc--CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeE
Q 010008          321 PVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLV  398 (520)
Q Consensus       321 ~~~~~~l~~~i~~~--~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~  398 (520)
                           ++.+++...  .+.+..........++ ..+++... ..    .++..++++.+.+.|.+.|+.+.......+++
T Consensus       218 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~-~~----~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~  286 (347)
T 1jg8_A          218 -----DFIERARKARKMLGGGMRQAGVLAAAG-IIALTKMV-DR----LKEDHENARFLALKLKEIGYSVNPEDVKTNMV  286 (347)
T ss_dssp             -----HHHHHHHHHHHHHTCCCSSTHHHHHHH-HHHHHHSS-TT----HHHHHHHHHHHHHHHHHHTCBCCGGGCCSSEE
T ss_pred             -----HHHHHHHHHHHHcCCchhHHHHHHHHH-HHHHHHHH-HH----HHHHHHHHHHHHHHHHhcCceeccCCCcceEE
Confidence                 555544321  1111111111112222 22455432 12    23344677888888877677653211234567


Q ss_pred             EEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          399 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       399 ~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ++++...+.+..++.+.|.+.||.+..    +     ..+.+|++.+..    .+++|++++++.|.++++
T Consensus       287 ~~~~~~~~~~~~~~~~~l~~~gi~v~~----~-----~~~~iRl~~~~~----~~~e~i~~~~~~l~~~l~  344 (347)
T 1jg8_A          287 ILRTDNLKVNAHGFIEALRNSGVLANA----V-----SDTEIRLVTHKD----VSRNDIEEALNIFEKLFR  344 (347)
T ss_dssp             EEECTTSSSCHHHHHHHHHHHTEECEE----E-----ETTEEEEECCTT----SCHHHHHHHHHHHHHHHH
T ss_pred             EEEcccccCCHHHHHHHHHHCCCEEec----C-----CCCeEEEEeCCC----CCHHHHHHHHHHHHHHHH
Confidence            777753356778888888889999852    2     246899987533    468999999999988765

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.93  E-value=8.2e-24  Score=224.12  Aligned_cols=340  Identities=13%  Similarity=0.037  Sum_probs=221.8

Q ss_pred             hccceEecCCC----CChHHHHHHHhhhhhccC--CCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC-CCCCCceeeec
Q 010008           93 FKSLELIASEN----FTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQP  165 (520)
Q Consensus        93 ~~~i~Liasen----~~~~~V~ea~~s~l~~~y--~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~-~~~~~~~~V~~  165 (520)
                      .+.|+|..+..    +.++.+.+++...+.+..  ..+|+.      .....++++...+++.+.+|+ +++    +|.+
T Consensus        76 ~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~------~~g~~~lr~~ia~~~~~~~g~~~~~----~v~~  145 (448)
T 3aow_A           76 SDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGT------TKGFTPLRETLMKWLGKRYGISQDN----DIMI  145 (448)
T ss_dssp             SSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCC------TTCCHHHHHHHHHHHHHHHCCCTTS----EEEE
T ss_pred             CCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHHHhCCCC------CCCcHHHHHHHHHHHHHhcCcCChh----hEEE
Confidence            45688865542    257889998887775421  123322      111245665555666667798 443    4556


Q ss_pred             CChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhh----h
Q 010008          166 LSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAI----L  240 (520)
Q Consensus       166 ~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~----~  240 (520)
                      ++|+ +|+..++.++++|||+|++.+|.|.+...        .+...|.  +++.+++++ + .+|+++|+++++    +
T Consensus       146 t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~~-~-g~d~~~L~~~l~~~~~~  213 (448)
T 3aow_A          146 TSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQ--------AFNFYEP--QYIQIPLDD-E-GMKVEILEEKLKELKSQ  213 (448)
T ss_dssp             ESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHTTCC--EEEEEEEET-T-EECHHHHHHHHHHHHHT
T ss_pred             eCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHH--------HHHHcCC--EEEEeccCC-C-CCCHHHHHHHHhhhhcc
Confidence            7766 99999999999999999999998765421        2333454  666666764 3 399999999987    3


Q ss_pred             -cCCcEEE-EcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCC---C--cccEEEeccCccc-
Q 010008          241 -FRPKLII-AGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K--YCDVVTTTTHKSL-  307 (520)
Q Consensus       241 -~~pklIi-~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~---~--~aDiv~~S~hK~l-  307 (520)
                       .+||+|+ +..++||+  ..+   +++|.++|+++|++||+|++|.. +.+.+....++   .  +.++++.|++|++ 
T Consensus       214 ~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~-~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~  292 (448)
T 3aow_A          214 GKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGE-LRYSGNPEKKIKALDNEGRVIYLGTFSKILA  292 (448)
T ss_dssp             TCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTT-CBCSSCCCCCTGGGCTTSCEEEEEESTTTTC
T ss_pred             CCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCcc-ccCCCCCCcCHHhcCCCCCEEEEccchhhcc
Confidence             3789874 56778876  454   56899999999999999999654 33333211122   1  3468899999998 


Q ss_pred             CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHHHHHC--
Q 010008          308 RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-SPEFKVYQNKVVSNCRALASRLVEL--  384 (520)
Q Consensus       308 ~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~-~~~~~~~~~~i~~na~~l~~~L~~~--  384 (520)
                      +|+|.||+++++      ++.+++.........+++.. ..+++..+|+... ....+...+.+.++++.+.+.|.+.  
T Consensus       293 ~GlriG~v~~~~------~l~~~l~~~~~~~~~~~~~~-~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  365 (448)
T 3aow_A          293 PGFRIGWMVGDP------GIIRKMEIAKQSTDLCTNVF-GQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMP  365 (448)
T ss_dssp             GGGCCEEEEECH------HHHHHHHHHHHHHHSSCCHH-HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             ccccEEEEEeCH------HHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            467789999987      67666544322212233333 3333344454310 1123555667778889999999874  


Q ss_pred             -CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHH
Q 010008          385 -GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF  463 (520)
Q Consensus       385 -G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~  463 (520)
                       |+.+..+ ....++|+++. .+.+..++.+.|.+.||.+..+...+. ....++++||++...     +++++++.++.
T Consensus       366 ~g~~~~~p-~~g~~~~v~~~-~~~~~~~l~~~l~~~gV~v~pg~~f~~-~~~~~~~iRls~~~~-----~~e~i~~~~~~  437 (448)
T 3aow_A          366 EGVKWTKP-EGGMFIWVTLP-DGIDSKKMLERAIKKGVAYVPGEAFYA-HRDVKNTMRLNFTYV-----DEDKIMEGIKR  437 (448)
T ss_dssp             TTCEECCC-SBSSEEEEECS-TTCCHHHHHHHHHHTTEECEEGGGGST-TCCCCSEEEEECSSS-----CTHHHHHHHHH
T ss_pred             CCeEEeCC-CccEEEEEEcC-CCCCHHHHHHHHHHCCcEEEcchhhcC-CCCCCCEEEEEeCCC-----CHHHHHHHHHH
Confidence             7887654 23456788874 356777777777777999854321111 112357899997643     47999999999


Q ss_pred             HHHHHHH
Q 010008          464 IHEGVEI  470 (520)
Q Consensus       464 i~~~l~~  470 (520)
                      |.++++.
T Consensus       438 L~~~l~~  444 (448)
T 3aow_A          438 LAETIKE  444 (448)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.93  E-value=5.8e-24  Score=220.93  Aligned_cols=336  Identities=13%  Similarity=0.029  Sum_probs=219.5

Q ss_pred             hccceEecCC-C---CChHHHHHHHhhhhhccC--CCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecC
Q 010008           93 FKSLELIASE-N---FTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPL  166 (520)
Q Consensus        93 ~~~i~Liase-n---~~~~~V~ea~~s~l~~~y--~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~  166 (520)
                      ...|+|..+. +   +.++.+.+++...+.+..  ..+|+..   .|   ..+++    +.+++++|++++    +|.++
T Consensus        32 ~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~---~~---~~~l~----~~la~~~g~~~~----~v~~~   97 (397)
T 2zyj_A           32 PGILSFAGGLPAPELFPKEEAAEAAARILREKGEVALQYSPT---EG---YAPLR----AFVAEWIGVRPE----EVLIT   97 (397)
T ss_dssp             TTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHTSCCCT---TC---CHHHH----HHHHHHHTSCGG----GEEEE
T ss_pred             CCceecCCCCCCchhCCHHHHHHHHHHHHHhcchhhhCCCCC---CC---CHHHH----HHHHHHhCCChh----hEEEe
Confidence            3567886543 2   257889999887775311  1233321   11   23444    567777787765    45567


Q ss_pred             ChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcE
Q 010008          167 SGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKL  245 (520)
Q Consensus       167 sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pkl  245 (520)
                      +|+ +|+.+++.++++|||+|++.+|.|.++..        .+...|.  +++.+++++ + .+|++++++++++.++++
T Consensus        98 ~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~-~-~~d~~~l~~~l~~~~~~~  165 (397)
T 2zyj_A           98 TGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQ--------AFRLQGP--RFLTVPAGE-E-GPDLDALEEVLKRERPRF  165 (397)
T ss_dssp             SHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHTTCC--EEEEEEEET-T-EECHHHHHHHHHHCCCSC
T ss_pred             ccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH--------HHHHcCC--EEEecCcCC-C-CCCHHHHHHHHhhcCCeE
Confidence            776 89999999999999999999988765421        2233454  566666663 3 399999999998657898


Q ss_pred             EE-EcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--ccc------EEEeccCcccC-CC
Q 010008          246 II-AGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCD------VVTTTTHKSLR-GP  310 (520)
Q Consensus       246 Ii-~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aD------iv~~S~hK~l~-Gp  310 (520)
                      |+ +..++||+  ..+   +++|.++|+++|+++|+|++|..+ ...+..+.++.  ..|      +++.|+||++. |.
T Consensus       166 v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~  244 (397)
T 2zyj_A          166 LYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYREL-YFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGL  244 (397)
T ss_dssp             EEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTC-BCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGG
T ss_pred             EEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccc-cCCCCCCCchhhhCcccCCCeEEEEecccccccccc
Confidence            74 56777875  555   458999999999999999997643 33222111221  122      78899999985 56


Q ss_pred             CceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC---CCE
Q 010008          311 RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL---GYK  387 (520)
Q Consensus       311 rgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~---G~~  387 (520)
                      |.|++++++      ++.+.+.....+...+++... .++...+|+.......++..+++.++++.+.+.|.+.   |+.
T Consensus       245 r~G~~~~~~------~~~~~l~~~~~~~~~~~~~~~-~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~  317 (397)
T 2zyj_A          245 RVAFAVAHP------EALQKLVQAKQGADLHTPMLN-QMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVR  317 (397)
T ss_dssp             CCEEEECCH------HHHHHHHHHHHHHHSSCCHHH-HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSE
T ss_pred             eeEEEecCH------HHHHHHHHHHHhhcCCCCHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeE
Confidence            779999987      666665433222222333333 3333334442100224566777888899999999874   788


Q ss_pred             EecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          388 LVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       388 v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      +..+. ...++++++. .+.+..++.+.|.+.||.+..+...+. ....++++||++...     +++|++++++.|.++
T Consensus       318 ~~~~~-~g~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~g~~f~~-~~~~~~~iRis~~~~-----~~~~i~~~~~~l~~~  389 (397)
T 2zyj_A          318 YTRPK-GGMFVWMELP-KGLSAEGLFRRALEENVAFVPGGPFFA-NGGGENTLRLSYATL-----DREGIAEGVRRLGRA  389 (397)
T ss_dssp             ECCCS-BSSEEEEECS-TTCCHHHHHHHHHHTTEEEEESGGGCT-TSCCTTEEEEECSSS-----CHHHHHHHHHHHHHH
T ss_pred             EccCC-ccEEEEEEcC-CCCCHHHHHHHHHHCCCEEechHHhcC-CCCCCCeEEEEcCCC-----CHHHHHHHHHHHHHH
Confidence            76542 3456777774 356777888888888999964321111 112357899997643     489999999999988


Q ss_pred             HHH
Q 010008          468 VEI  470 (520)
Q Consensus       468 l~~  470 (520)
                      ++.
T Consensus       390 l~~  392 (397)
T 2zyj_A          390 LKG  392 (397)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.93  E-value=1.2e-24  Score=225.24  Aligned_cols=307  Identities=11%  Similarity=0.092  Sum_probs=207.4

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +.++.+.++ .+++++++++|++ +   ..+.+.||++|+.+++.. ++|||+|+++++.|.++.   +.   ......|
T Consensus        30 ~~~~~~~~~-~~~~~l~~~~~~~-~---~v~~~~sgt~a~~~~~~~-~~~gd~vi~~~~~~~~~~---~~---~~~~~~g   97 (379)
T 3ke3_A           30 SKAFQEVMN-DLLSNLKTVYNAE-A---AVIIPGSGTYGMEAVARQ-LTIDEDCLIIRNGWFSYR---WT---QILEKGK   97 (379)
T ss_dssp             SHHHHHHHH-HHHHHHHHHHTCS-E---EEEEESCHHHHHHHHHHH-HCTTCEEEEEECSHHHHH---HH---HHHHHHC
T ss_pred             CHHHHHHHH-HHHHHHHHHhCCC-C---EEEEcCChhHHHHHHHHh-CCCCCeEEEEeCCchhHH---HH---HHHHHhC
Confidence            455555544 5678999999997 2   234456888999987754 579999999987553321   10   0111223


Q ss_pred             ceEEEEEcccCCC-------C-CCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechh
Q 010008          213 IYFESMPYRLDES-------T-GLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAH  279 (520)
Q Consensus       213 ~~~~~v~~~~d~~-------~-~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah  279 (520)
                      ..++++.++++..       . +.+|+++++++++..++++|++...++++  ..|   +++|+++|+++|+++++|++|
T Consensus        98 ~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~  177 (379)
T 3ke3_A           98 FAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIA  177 (379)
T ss_dssp             CSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEecc
Confidence            2234444444310       1 26899999999965589999887665544  778   999999999999999999998


Q ss_pred             hcccccccccCCCCC--cccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhcccC---C---------------CC
Q 010008          280 ISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAV---F---------------PG  338 (520)
Q Consensus       280 ~~gli~~~~~~~p~~--~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~~~~---~---------------p~  338 (520)
                      . |..     +..+.  ++|++++|+||+|.||.| |++++++      ++.+++....   +               .+
T Consensus       178 ~-g~~-----~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g  245 (379)
T 3ke3_A          178 S-GCV-----WLDMKELGIDVLISAPQKGWSSTPCAGLVMLSA------AAIKKVESTESNCFSLDLKQWLTIMRAYENG  245 (379)
T ss_dssp             C-TTC-----CCCHHHHTCSEEEECTTTTTCSCCCEEEEEECH------HHHHHHHTCCCSCSTTCHHHHHHHHHHHHTT
T ss_pred             c-CCc-----cccccccCCCEEEecchhhcCCCCceEEEEECH------HHHHhhhcCCCCceeecHHHHHHHHHhhhcc
Confidence            6 532     11122  689999999999988876 8888887      5544443210   0               01


Q ss_pred             ---CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCC-CCe-eEEEEecCCCCCHHHHH
Q 010008          339 ---LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS-DNH-LVLVDLRPMGIDGARVE  413 (520)
Q Consensus       339 ---~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt-~~~-~~~vd~~~~g~~~~~~~  413 (520)
                         +.++++...++++..+++.+...++++..++..++++++.+.|.+.|++++.+.. ... +..+..  .+. .....
T Consensus       246 ~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~--~~~-~~~~~  322 (379)
T 3ke3_A          246 GHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIESVAAEGFEAPGVVVSYT--ERD-DMHKG  322 (379)
T ss_dssp             SCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCBCSSEEEEEC--SCH-HHHSS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCccccCceEEEEcc--CCc-chHHH
Confidence               2357888899999889987765557888899999999999999999998865421 122 222222  111 11125


Q ss_pred             HHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          414 KILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       414 ~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +.|.+.||.+..+.-|....+...+.|||+++..++    ++|++++++.|+++++.
T Consensus       323 ~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t----~~di~~~~~~l~~~l~~  375 (379)
T 3ke3_A          323 SAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDK----LTDIDGTVERFEKALDE  375 (379)
T ss_dssp             HHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHH----HTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCC----HHHHHHHHHHHHHHHHH
Confidence            678889998854321111112336789999876654    79999999999988764

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.93  E-value=1.8e-24  Score=222.16  Aligned_cols=323  Identities=14%  Similarity=0.082  Sum_probs=212.7

Q ss_pred             CCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-
Q 010008          101 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-  179 (520)
Q Consensus       101 sen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al-  179 (520)
                      +..++++.|++++...+.+.+  .+|      + +...+++    +.+++++|++.     .+...+|++|+.+++.++ 
T Consensus         7 ~~~~~~~~v~~a~~~~~~~~~--~~~------~-~~~~~l~----~~la~~~~~~~-----v~~~~ggt~al~~~~~~~~   68 (375)
T 2fnu_A            7 SEPCLDKEDKKAVLEVLNSKQ--LTQ------G-KRSLLFE----EALCEFLGVKH-----ALVFNSATSALLTLYRNFS   68 (375)
T ss_dssp             CCCCCCHHHHHHHHHHHTSSC--CSS------S-HHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHSS
T ss_pred             CCCCCCHHHHHHHHHHHHcCc--ccC------C-hHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHhc
Confidence            567889999999998886532  122      1 2334444    77889999872     244567779999999999 


Q ss_pred             --CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCC
Q 010008          180 --LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF  257 (520)
Q Consensus       180 --l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~~~  257 (520)
                        ++|||+|+++++.|.+...        .+...|.  +++.++++++ +.+|++++++++++ ++++|++..+ .+...
T Consensus        69 ~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~-~~~d~~~l~~~i~~-~~~~v~~~~~-tG~~~  135 (375)
T 2fnu_A           69 EFSADRNEIITTPISFVATAN--------MLLESGY--TPVFAGIKND-GNIDELALEKLINE-RTKAIVSVDY-AGKSV  135 (375)
T ss_dssp             CCCTTSCEEEECSSSCTHHHH--------HHHHTTC--EEEECCBCTT-SSBCGGGSGGGCCT-TEEEEEEECG-GGCCC
T ss_pred             ccCCCCCEEEECCCccHhHHH--------HHHHCCC--EEEEeccCCC-CCCCHHHHHhhcCc-CceEEEEeCC-cCCcc
Confidence              8999999999998765432        2233454  7777778743 58999999999987 8898877766 55588


Q ss_pred             CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEEEec--cCcccCCCCceEEEe-eCCCcchhhHHHhhcc
Q 010008          258 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTT--THKSLRGPRGGMIFF-KKDPVLGVELESAINN  333 (520)
Q Consensus       258 d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S--~hK~l~GprgG~I~~-~~~~~~~~~l~~~i~~  333 (520)
                      |+++|.++|+++|+++|+|++|..|....+.   .+. ..|+++.|  .||++ |+..|++++ +++     ++.+++..
T Consensus       136 ~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~---~~~~~~~i~~~s~s~~K~~-~~g~g~~~~~~~~-----~~~~~~~~  206 (375)
T 2fnu_A          136 EVESVQKLCKKHSLSFLSDSSHALGSEYQNK---KVGGFALASVFSFHAIKPI-TTAEGGAVVTNDS-----ELHEKMKL  206 (375)
T ss_dssp             CHHHHHHHHHHHTCEEEEECTTCTTCEETTE---ETTSSSSEEEEECCTTSSS-CCSSCEEEEESCH-----HHHHHHHH
T ss_pred             CHHHHHHHHHHcCCEEEEECccccCCeECCe---eccccCCeEEEeCCCCCCc-cccCceEEEeCCH-----HHHHHHHH
Confidence            9999999999999999999999877543221   121 23565555  55998 453366666 432     45554433


Q ss_pred             cCCCCC------------CCCC-hHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecC--C--CCC
Q 010008          334 AVFPGL------------QGGP-HNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSG--G--SDN  395 (520)
Q Consensus       334 ~~~p~~------------~g~p-~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~--g--t~~  395 (520)
                      ....+.            .+.+ ....+++ ++++..  ...+++..++..++++++.+.|.+. |+++..+  +  ...
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~  283 (375)
T 2fnu_A          207 FRSHGMLKKDFFEGEVKSIGHNFRLNEIQS-ALGLSQ--LKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSN  283 (375)
T ss_dssp             HTBTTEEESSSSCEEESSCCCBCCCCHHHH-HHHHHH--HTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCC
T ss_pred             HHhcCCccccccccccccccccCCCCHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcce
Confidence            221110            1110 1112211 112222  1355777888899999999999884 7877653  1  123


Q ss_pred             eeEEEEecCCCC-CHHHHHHHHhhcCeEEcCCCCCCCC-CCC---------------CCCEEEEccCCccccCCCHHHHH
Q 010008          396 HLVLVDLRPMGI-DGARVEKILDMASITLNKNSVPGDK-SAL---------------VPGGIRIGSPAMTTRGFSEKEFV  458 (520)
Q Consensus       396 ~~~~vd~~~~g~-~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~---------------~~~giRig~~~~tt~g~~~~d~~  458 (520)
                      +++++.+...++ +..++.+.|.+.||.++..+.|++. ..+               ..+.|||+++..    .+++|++
T Consensus       284 ~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~----~t~~~i~  359 (375)
T 2fnu_A          284 HLYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHAN----LNLESVQ  359 (375)
T ss_dssp             SCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTT----CCHHHHH
T ss_pred             EEEEEEeCccccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCC----CCHHHHH
Confidence            445666653334 5677888899999999743333321 000               125799997654    3589999


Q ss_pred             HHHHHHHHHHHH
Q 010008          459 AIADFIHEGVEI  470 (520)
Q Consensus       459 ~la~~i~~~l~~  470 (520)
                      ++++.|+++++.
T Consensus       360 ~~~~~l~~~~~~  371 (375)
T 2fnu_A          360 NIAHSVLKTFES  371 (375)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988753

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.92  E-value=3.9e-24  Score=221.41  Aligned_cols=330  Identities=14%  Similarity=0.126  Sum_probs=219.5

Q ss_pred             cceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHH
Q 010008           95 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE  174 (520)
Q Consensus        95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~  174 (520)
                      .|+|..  ...++.+++++...+.+.+        |+. .+..++++    +.+++++|.+.     .+.+.+|++|+.+
T Consensus        10 ~i~~~~--p~~~~~~~~a~~~~~~~~~--------~~~-~~~~~~l~----~~la~~~~~~~-----~~~~~~gt~al~~   69 (393)
T 1mdo_A           10 FLPFSR--PAMGAEELAAVKTVLDSGW--------ITT-GPKNQELE----AAFCRLTGNQY-----AVAVSSATAGMHI   69 (393)
T ss_dssp             CBCSCC--CCCCHHHHHHHHHHHHHTC--------CSS-SHHHHHHH----HHHHHHHCCSE-----EEEESCHHHHHHH
T ss_pred             ccccCC--CCCCHHHHHHHHHHHhcCC--------cCC-ChHHHHHH----HHHHHHhCCCc-----EEEecChHHHHHH
Confidence            455543  4467889999988876532        111 23344554    67888999862     3555778899999


Q ss_pred             HHHhh-CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC
Q 010008          175 VYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  253 (520)
Q Consensus       175 ~l~al-l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~  253 (520)
                      ++.++ ++|||+|+++++.|.+...        .+...|.  +++.++++++++.+|++++++++++ ++++|+++.+ .
T Consensus        70 ~~~~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~-~  137 (393)
T 1mdo_A           70 ALMALGIGEGDEVITPSMTWVSTLN--------MIVLLGA--NPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPVHY-A  137 (393)
T ss_dssp             HHHHTTCCTTCEEEEESSSCHHHHH--------HHHHTTC--EEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCBCG-G
T ss_pred             HHHHcCCCCCCEEEeCCCccHhHHH--------HHHHCCC--EEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEeCC-C
Confidence            99999 9999999999998765421        2334555  6777777765678999999999987 8999887642 3


Q ss_pred             CCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccC--cccCCCCceEEEeeCCCcchhhHHHhh
Q 010008          254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAI  331 (520)
Q Consensus       254 p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~h--K~l~GprgG~I~~~~~~~~~~~l~~~i  331 (520)
                      +...|+++|.++|+++|+++|+|++|..|....+. +...  .|++++|+|  |+++|+++|+++++++     ++.+++
T Consensus       138 G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~-~~~~--~d~~~~S~~k~K~l~~~~~g~~~~~~~-----~~~~~l  209 (393)
T 1mdo_A          138 GAPADLDAIYALGERYGIPVIEDAAHATGTSYKGR-HIGA--RGTAIFSFHAIKNITCAEGGIVVTDNP-----QFADKL  209 (393)
T ss_dssp             GCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTE-ETTS--SSEEEEECCTTSSSCSSSCEEEEESCH-----HHHHHH
T ss_pred             CCcCCHHHHHHHHHHcCCeEEEECccccCCeECCe-ecCC--CCeEEEeCCCCCccccccceEEEeCCH-----HHHHHH
Confidence            34779999999999999999999998877654331 1111  799999999  9998889999999742     455444


Q ss_pred             cccCCCC--------------------CCCC-ChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEec
Q 010008          332 NNAVFPG--------------------LQGG-PHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVS  390 (520)
Q Consensus       332 ~~~~~p~--------------------~~g~-p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~  390 (520)
                      ......+                    ..|. ..+..+++ ++++..+  ..+++..++..++++.+.+.|.+.++++..
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-a~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  286 (393)
T 1mdo_A          210 RSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNA-AIALAQL--QKLDALNARRAAIAAQYHQAMADLPFQPLS  286 (393)
T ss_dssp             HHHTBTTEECC-----------CCEESSCCCBCCCCHHHH-HHHHHHH--HTHHHHHHHHHHHHHHHHHHHHTSSCEECC
T ss_pred             HHHHhcCCcccchhhhcccccccccccccCccCCCCHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence            3211110                    0111 01111211 1122222  234566777778889999999887777653


Q ss_pred             CC-----CCCeeEEEEecC--CCCCHHHHHHHHhhcCeEEcCCCCCCC----------CCCC------CCCEEEEccCCc
Q 010008          391 GG-----SDNHLVLVDLRP--MGIDGARVEKILDMASITLNKNSVPGD----------KSAL------VPGGIRIGSPAM  447 (520)
Q Consensus       391 ~g-----t~~~~~~vd~~~--~g~~~~~~~~~L~~~gI~v~~~~~Pg~----------~~~~------~~~giRig~~~~  447 (520)
                      ..     ...+++++.+..  .+.+..++.+.|.+.||.++....|..          .+..      ....+|+++...
T Consensus       287 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~  366 (393)
T 1mdo_A          287 LPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPD  366 (393)
T ss_dssp             CCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTT
T ss_pred             CCCCCCCceeEEEEEEecccccccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCC
Confidence            11     223456776642  045778888999999999976543310          0000      134799987643


Q ss_pred             cccCCCHHHHHHHHHHHHHHHHHH
Q 010008          448 TTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       448 tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                          ++++|++++++.|+++++..
T Consensus       367 ----~t~~~i~~~~~~l~~~~~~~  386 (393)
T 1mdo_A          367 ----MTESDFDRVITALHQIAGQG  386 (393)
T ss_dssp             ----CCHHHHHHHHHHHHHHHC--
T ss_pred             ----CCHHHHHHHHHHHHHHHhcC
Confidence                45899999999999887643

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.92  E-value=4.2e-24  Score=225.70  Aligned_cols=340  Identities=14%  Similarity=0.112  Sum_probs=210.8

Q ss_pred             ccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHc--CCCCCCCceeeecCChH
Q 010008           94 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF--NLDENKWGVNVQPLSGS  169 (520)
Q Consensus        94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lf--g~~~~~~~~~V~~~sGs  169 (520)
                      +.|+|..+++  .+++.|++++...+.+....  ++...|+......++++...+++.  +  +++++    +|.+++|+
T Consensus        70 ~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~--~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~----~i~~t~G~  141 (449)
T 3qgu_A           70 KIISLGIGDTTEPLPKYIADAMAKAAAGLATR--EGYSGYGAEQGQGALREAVASTFY--GHAGRAAD----EIFISDGS  141 (449)
T ss_dssp             CCEECSSCCCCCCCCHHHHHHHHHHHHGGGGS--CCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGG----GEEEESCH
T ss_pred             CEEEeeCCCCCCCCCHHHHHHHHHHHHhhccc--cCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHH----HEEEccCH
Confidence            4688887775  36899999998887642210  111113222223455544334333  3  44554    45567777


Q ss_pred             -HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccce--------EEEEEcccCCC-CCCCCHHHHHHHhh
Q 010008          170 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY--------FESMPYRLDES-TGLVDYDMLEKTAI  239 (520)
Q Consensus       170 -~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~--------~~~v~~~~d~~-~~~iD~d~le~~i~  239 (520)
                       +++..+ .++++|||+|++.+|.|.++..        .+...|..        ++++.++++.+ ....|++++     
T Consensus       142 ~~al~~~-~~l~~~gd~Vl~~~p~~~~~~~--------~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  207 (449)
T 3qgu_A          142 KCDIARI-QMMFGSKPTVAVQDPSYPVYVD--------TSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----  207 (449)
T ss_dssp             HHHHHHH-HHHHCSSSCEEEEESCCTHHHH--------HHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----
T ss_pred             HHHHHHH-HHHhCCCCEEEEcCCCChhHHH--------HHHHcCCcccccccccceeEEEecccccCCcCChhHc-----
Confidence             777766 8899999999999998876532        12223321        12555556543 345565432     


Q ss_pred             hcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCC------CcccEEEeccCccc-
Q 010008          240 LFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF------KYCDVVTTTTHKSL-  307 (520)
Q Consensus       240 ~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~------~~aDiv~~S~hK~l-  307 (520)
                      + ++++|+++.++||+  ..+   +++|+++|+++|++||+|++|. ++...+..+.++      ...++++.|+||++ 
T Consensus       208 ~-~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g  285 (449)
T 3qgu_A          208 K-RTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYA-LYISNPDCPKTIYEIPGADEVAIETCSFSKYAG  285 (449)
T ss_dssp             C-CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTG-GGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGT
T ss_pred             C-CCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchH-hhhcCCCCCCCHhhccCCCCcEEEEecchhhcC
Confidence            3 78999999899987  444   7888899999999999999965 444433222122      13468899999997 


Q ss_pred             -CCCCceEEEeeCCCcch--hhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC
Q 010008          308 -RGPRGGMIFFKKDPVLG--VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL  384 (520)
Q Consensus       308 -~GprgG~I~~~~~~~~~--~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~  384 (520)
                       +|+|.|+++++++....  ..+...+.........+.+.. ..++...+++.......++..+++.++++.+.+.|.+.
T Consensus       286 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  364 (449)
T 3qgu_A          286 FTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNI-VQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM  364 (449)
T ss_dssp             CTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHH-HHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CccceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence             58899999998842100  000011211111112233333 33333334433111345677888999999999999998


Q ss_pred             CCEEecCCCCCeeEEEEecCCCCCHHHHHH-HHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHH
Q 010008          385 GYKLVSGGSDNHLVLVDLRPMGIDGARVEK-ILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF  463 (520)
Q Consensus       385 G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~-~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~  463 (520)
                      |+++..+ ...+++|+++.  +.+..++.+ +++++||.+..+..+   ++..+++|||+..      .++++++++++.
T Consensus       365 g~~~~~~-~~~~~~~~~~~--~~~~~~~~~~l~~~~gI~v~pg~~f---~~~~~~~iRis~~------~~~e~i~~~l~~  432 (449)
T 3qgu_A          365 GFSVYGG-DDAPYIWVGFP--GKPSWDVFAEILERCNIVTTPGSGY---GPAGEGFVRASAF------GSRENILEAVRR  432 (449)
T ss_dssp             TCCEEES-SSSSEEEEECT--TSCHHHHHHHHHHHHCEECEEGGGG---CGGGTTEEEEECC------SCHHHHHHHHHH
T ss_pred             CCeeeCC-CCeeEEEEECC--CCCHHHHHHHHHHHCCEEEecchHh---CCCCCCeEEEEec------CCHHHHHHHHHH
Confidence            9988754 23567788875  567766654 455679998543222   2234689999842      258999999999


Q ss_pred             HHHHHHH
Q 010008          464 IHEGVEI  470 (520)
Q Consensus       464 i~~~l~~  470 (520)
                      |.++++.
T Consensus       433 l~~~~~~  439 (449)
T 3qgu_A          433 FKEAYGK  439 (449)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHHh
Confidence            9888753

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.92  E-value=6.5e-24  Score=222.32  Aligned_cols=330  Identities=16%  Similarity=0.139  Sum_probs=216.1

Q ss_pred             CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-CC
Q 010008          103 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LK  181 (520)
Q Consensus       103 n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al-l~  181 (520)
                      .++++.+++++...+.+.....|+.  .++..+..++++    +++++++|++.     .|.++||++|+..++.++ ++
T Consensus        12 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~g~~~l~~~l~----~~la~~~g~~~-----~i~~~~gt~al~~~~~~~~~~   80 (418)
T 2c81_A           12 PQHSDRTRRKIEEVFQSNRWAISGY--WTGEESMERKFA----KAFADFNGVPY-----CVPTTSGSTALMLALEALGIG   80 (418)
T ss_dssp             SCCCHHHHHHHHHHHHHTCCSTTSB--CCSSCCHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHTTCC
T ss_pred             CCCCHHHHHHHHHHHhcCCccccCc--ccCCHHHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHcCCC
Confidence            4568999999988886532111321  122223344444    78889999873     466789999999999999 89


Q ss_pred             CCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHH
Q 010008          182 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPR  261 (520)
Q Consensus       182 pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~~  261 (520)
                      |||+|+++++.|.+...        .+...|.  +++.++++++++.+|++++++++++ ++++|+++++ .+...|+++
T Consensus        81 ~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~-~G~~~~~~~  148 (418)
T 2c81_A           81 EGDEVIVPSLTWIATAT--------AVLNVNA--LPVFVDVEADTYCIDPQLIKSAITD-KTKAIIPVHL-FGSMANMDE  148 (418)
T ss_dssp             TTCEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTCSBCHHHHGGGCCT-TEEEECCBCC-TTCCCCHHH
T ss_pred             CcCEEEECCCccHhHHH--------HHHHcCC--EEEEEecCCCCCCcCHHHHHHhhCC-CCeEEEEeCC-cCCcccHHH
Confidence            99999999998765431        2334454  6777777755789999999999987 8899887643 344789999


Q ss_pred             HHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEecc--CcccCCCCceEEEeeCCCcchhhHHHhhcccCCC--
Q 010008          262 MRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTT--HKSLRGPRGGMIFFKKDPVLGVELESAINNAVFP--  337 (520)
Q Consensus       262 i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~--hK~l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p--  337 (520)
                      |.++|+++|++||+|++|..+....+.....  ..|++++|+  ||+++++++|+++++++     ++.+++......  
T Consensus       149 i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~--~~~~~~~s~s~~K~~~~g~~g~~~~~~~-----~l~~~~~~~~~~~~  221 (418)
T 2c81_A          149 INEIAQEHNLFVIEDCAQSHGSVWNNQRAGT--IGDIGAFSCQQGKVLTAGEGGIIVTKNP-----RLFELIQQLRADSR  221 (418)
T ss_dssp             HHHHHHHTTCEEEEECTTCTTCEETTEETTS--SSSEEEEECCTTSSSCSSSCEEEEESCH-----HHHHHHHHHHBTTE
T ss_pred             HHHHHHHCCCEEEEECcccccCccCCEeccc--ccceEEEeccCCcccCCCCeEEEEECCH-----HHHHHHHHHHHhCc
Confidence            9999999999999999988775332211111  246666666  99986568899999643     444443321111  


Q ss_pred             --------------------CCCCCC--hHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCC
Q 010008          338 --------------------GLQGGP--HNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSD  394 (520)
Q Consensus       338 --------------------~~~g~p--~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~  394 (520)
                                          ...|-.  .....+++.  +...  ..+++..++..++++++.+.|.+. |+++......
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~--~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  297 (418)
T 2c81_A          222 VYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAIL--LDQL--QELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQ  297 (418)
T ss_dssp             EECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHH--HHHH--TTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTT
T ss_pred             cccccccccccchhhccccccccCcCCCcCHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCC
Confidence                                000100  001112221  1221  245667788888899999999875 8887632111


Q ss_pred             ----C-eeEEEEecC---CCCCHHHHHHHHhhc-CeE---EcCCCCCCCC-CCC-----------------------C--
Q 010008          395 ----N-HLVLVDLRP---MGIDGARVEKILDMA-SIT---LNKNSVPGDK-SAL-----------------------V--  436 (520)
Q Consensus       395 ----~-~~~~vd~~~---~g~~~~~~~~~L~~~-gI~---v~~~~~Pg~~-~~~-----------------------~--  436 (520)
                          . +++.+.+..   .+++..++.+.|.+. ||.   ++..+.|.+. ..+                       .  
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (418)
T 2c81_A          298 VSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPV  377 (418)
T ss_dssp             EEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHH
T ss_pred             CcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChH
Confidence                2 233355542   256788888888887 999   8766544221 000                       0  


Q ss_pred             -----CCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          437 -----PGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       437 -----~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                           .+.|||+++..+   -+++|++++++.|+++++
T Consensus       378 ~~~~~~~~lrl~~~~~~---gt~edi~~~~~~l~~~~~  412 (418)
T 2c81_A          378 SERASGQSIVIHHAILL---AEPSHLSLLVDAVAELAR  412 (418)
T ss_dssp             HHHHHHHEEEEEGGGGG---SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCEEEecCCccC---CCHHHHHHHHHHHHHHHH
Confidence                 157999987544   048999999999998875

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.92  E-value=2.1e-24  Score=226.67  Aligned_cols=306  Identities=15%  Similarity=0.113  Sum_probs=207.6

Q ss_pred             cChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhh--ccC--CCCCCCCCCCCcchhHHHHHHHHHHHHHHHc
Q 010008           77 ADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLT--NKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAF  152 (520)
Q Consensus        77 ~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~--~~y--~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lf  152 (520)
                      ...++++.+.++..++...|+.++++|.  +.|++|+.....  ..+  +.||..     +....+++|    +++++++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~a~~n~--~~Vl~A~~~~~~~~~~~~~~~gy~y-----~~~~~~~Le----~~lA~l~   86 (427)
T 3i16_A           18 RVLKLYETAMNDIQNQFKILDDIREFNQ--LKVLNAFQEERISEAHFTNSSGYGY-----GDIGRDSLD----AVYARVF   86 (427)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHHHHH--HHHHHHHHHTTCCGGGSCCCCTTCT-----TCHHHHHHH----HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHhchhHHhcCCCCCCCC-----CHHHHHHHH----HHHHHHh
Confidence            3445677778888888888999999987  779999976421  111  233332     223356666    6789999


Q ss_pred             CCCCCCCceeee--cCChHHHHHHHHHhhCCCCCEEEEcC-CCCCcccccc-cccc--ccccccccceEEEEEcccCCCC
Q 010008          153 NLDENKWGVNVQ--PLSGSPANFEVYTAILKPHDRIMGLD-LPHGGHLSHG-FMTP--KRRVSGTSIYFESMPYRLDEST  226 (520)
Q Consensus       153 g~~~~~~~~~V~--~~sGs~A~~~~l~all~pGD~Vl~~~-~~~~ghls~g-~~~~--~~~v~~~g~~~~~v~~~~d~~~  226 (520)
                      |++.+    .|+  ++||++||.+++.++++|||+|++.+ +.|+++.... ....  ...+...|.  +++.++++ ++
T Consensus        87 g~e~a----lv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~--~~~~v~~~-~~  159 (427)
T 3i16_A           87 NTESA----LVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGI--NYKQVDLK-ED  159 (427)
T ss_dssp             TCSEE----EEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTC--EEEECCCC-TT
T ss_pred             CCcce----EEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCC--EEEEecCc-cC
Confidence            99863    443  68999999999999999999999998 8776653100 0000  001223354  66777776 45


Q ss_pred             CCCCHHHHHHHhhh-cCCcEEEEcC----CCCCC--CCCHHHHHHHHHH--hCCEEEEechhhcccccccccCCCCC-cc
Q 010008          227 GLVDYDMLEKTAIL-FRPKLIIAGA----SAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK-YC  296 (520)
Q Consensus       227 ~~iD~d~le~~i~~-~~pklIi~~~----s~~p~--~~d~~~i~~ia~~--~g~~li~D~Ah~~gli~~~~~~~p~~-~a  296 (520)
                      +.+|++++++++++ .+||+|+++.    ++||+  ..|+++|+++|++  +|+++++|++|..+...    ..|+. ++
T Consensus       160 g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~----~~p~~~ga  235 (427)
T 3i16_A          160 GKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDT----KEPTDVGA  235 (427)
T ss_dssp             SSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSS----SCGGGGTC
T ss_pred             CCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCcccccc----CCccccCC
Confidence            78999999999983 2899999987    77775  5799999999999  99999999998755421    23444 68


Q ss_pred             cEEEeccCcccCC---CCceEEEeeCCCcchhhHHHhhcccC-CCCC--CCCChHHHHHHHHHHHHHhcCchhHHHHHHH
Q 010008          297 DVVTTTTHKSLRG---PRGGMIFFKKDPVLGVELESAINNAV-FPGL--QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV  370 (520)
Q Consensus       297 Div~~S~hK~l~G---prgG~I~~~~~~~~~~~l~~~i~~~~-~p~~--~g~p~~~~iaala~al~~~~~~~~~~~~~~i  370 (520)
                      |++++|+||+++|   ++||+|++++      ++.+++.... .+++  ..+|.... +  ..+++.+.  ....+.++.
T Consensus       236 Div~~S~sK~lgg~g~~~gG~i~~~~------~li~~l~~~~~~~~~g~~~~~~~~~-a--~~~l~gl~--~~~~r~~~~  304 (427)
T 3i16_A          236 DLIAGSLIKNIGGGIAPTGGYLAGTK------DCIEKTSYRLTVPGIGGECGSTFGV-V--RSMYQGLF--LAPHISMEA  304 (427)
T ss_dssp             SEEEEETTSGGGTTTCCSCEEEEECH------HHHHHHHHHHSCTTTGGGCCCCTTC-H--HHHHHHHH--HHHHHHHHH
T ss_pred             eEEEecCcccCCCCCCceEEEEEECH------HHHHHHHHhcccCccCccCCccHHH-H--HHHHHHHH--HHHHHHHHH
Confidence            9999999999987   8899999987      7777765422 2222  11221110 1  11122111  124678899


Q ss_pred             HHHHHHHHHHHHHCCCEEecCCCCCe-----eEEEEecCCCCCHHH---HHHHHhhcCe
Q 010008          371 VSNCRALASRLVELGYKLVSGGSDNH-----LVLVDLRPMGIDGAR---VEKILDMASI  421 (520)
Q Consensus       371 ~~na~~l~~~L~~~G~~v~~~gt~~~-----~~~vd~~~~g~~~~~---~~~~L~~~gI  421 (520)
                      .+|+..+++.|++.|+++..+  .+|     ++.+.+.    +.+.   +.+.|.....
T Consensus       305 ~~~a~~la~~L~~~g~~V~p~--~~~~~~~~i~~i~l~----~~~~~~~f~~~l~~~~~  357 (427)
T 3i16_A          305 LKGAILCSRIMELAGFEVMPK--YDEKRSDIIQSIKFN----DKDKLIEFCKGIQTGSP  357 (427)
T ss_dssp             HHHHHHHHHHHHHTTCEEESC--TTSCCSSSCEEEECS----SHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHhCCCeecCC--CCCCCccEEEEEEEC----CHHHHHHHHHHHhhcCc
Confidence            999999999999999988543  334     5555553    3333   4455555543

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.92  E-value=3.3e-24  Score=224.25  Aligned_cols=349  Identities=12%  Similarity=0.143  Sum_probs=220.4

Q ss_pred             cccChHHHHHHHHHHHHhh-----ccceEecCC------C-CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHH
Q 010008           75 GEADPEVCEIITKEKERQF-----KSLELIASE------N-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELET  142 (520)
Q Consensus        75 ~~~d~~~~~~~~~e~~~~~-----~~i~Liase------n-~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~  142 (520)
                      ...++.++.+..+..+...     +.|+|..++      + ++++.|.+++....... ..+|+.   ..|   ..++++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~---~~g---~~~lr~   87 (418)
T 3rq1_A           15 KKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSE-HVGYAP---IAG---IPDFLC   87 (418)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHCGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHH-HHSCCC---TTC---CHHHHH
T ss_pred             CCCCchHHHHHHHHHhhhhhhcCCCeEECCCCcccCCCCCccccHHHHHHHHHhcccc-cCCCCC---CCC---hHHHHH
Confidence            3444556666654433322     568887763      2 47889999987654321 123332   112   234454


Q ss_pred             HHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcc
Q 010008          143 LCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR  221 (520)
Q Consensus       143 ~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~  221 (520)
                      ...+++....+.+..   .+|.+++|+ +|+..++.++++|||+|++++|.|.++..        .+...|.  +++.++
T Consensus        88 ~ia~~~~~~~~~~~~---~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~--------~~~~~g~--~~~~v~  154 (418)
T 3rq1_A           88 AAEKECFGNFRPEGH---IRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRV--------ICSDTGR--TLVTYS  154 (418)
T ss_dssp             HHHHHHHGGGCCSSE---EEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHH--------HHHHTTC--EEEEEC
T ss_pred             HHHHHHhcccCcccc---ccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHH--------HHHHcCC--EEEEEe
Confidence            444555555554421   245567766 99999999999999999999998765431        2334555  677777


Q ss_pred             cCCCCCCCCHHHHHHHhhhc---CCc-EEEEcCC-CCCC--CCCHHH---HHHHHH------HhCCEEEEechhhccccc
Q 010008          222 LDESTGLVDYDMLEKTAILF---RPK-LIIAGAS-AYPR--DFDYPR---MRQIAD------AVGALLMMDMAHISGLVA  285 (520)
Q Consensus       222 ~d~~~~~iD~d~le~~i~~~---~pk-lIi~~~s-~~p~--~~d~~~---i~~ia~------~~g~~li~D~Ah~~gli~  285 (520)
                      ++++++.+|++++++.+++.   +++ ++++++| +||+  ..+.++   |+++|+      ++|+++|+|++| .++..
T Consensus       155 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y-~~~~~  233 (418)
T 3rq1_A          155 LFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAY-LDYSG  233 (418)
T ss_dssp             SBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTT-GGGSS
T ss_pred             eeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccc-ccccC
Confidence            76556789999999998753   666 7888878 8886  666554   555555      889999999996 45544


Q ss_pred             ccccCCCC----C--ccc---EEEeccCccc--CCCCceEEEe---eCCCcchhhHHHhhcccCCC---CCCCCChHHHH
Q 010008          286 ASVVADPF----K--YCD---VVTTTTHKSL--RGPRGGMIFF---KKDPVLGVELESAINNAVFP---GLQGGPHNHTI  348 (520)
Q Consensus       286 ~~~~~~p~----~--~aD---iv~~S~hK~l--~GprgG~I~~---~~~~~~~~~l~~~i~~~~~p---~~~g~p~~~~i  348 (520)
                      .+....++    .  ..|   ++++|+||++  +|+|.|++++   ++      ++.+.+......   +...+++....
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (418)
T 3rq1_A          234 EKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDE------EIADEFFEVNKSTSRATWSNICRPAM  307 (418)
T ss_dssp             CHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSH------HHHHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred             ChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCH------HHHHHHHHHHHHHHhhccCCCchHHH
Confidence            32111011    1  123   7789999986  6889999998   55      566555432100   00122233333


Q ss_pred             HHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEE
Q 010008          349 GGLAVCLKHAQ-----SPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITL  423 (520)
Q Consensus       349 aala~al~~~~-----~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v  423 (520)
                      +++..+++...     ..+.+.+.+++.++++.+.+.|.+.|+++..+. .+.++|+++.    +..++.+.|.++||.+
T Consensus       308 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~~~~----~~~~~~~~l~~~gi~v  382 (418)
T 3rq1_A          308 RTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPMLPYR-GGFFITIPTD----SANAICEELKKEHIYV  382 (418)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC-SSSEEEEECT----THHHHHHHHHHTTEEC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-ceEEEEcCCC----CHHHHHHHHHhCCEEE
Confidence            33333332110     011234556778888889999988888876542 3455566653    5677888899999998


Q ss_pred             cCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          424 NKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       424 ~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      .    ||      ++++||++..     .++++++++++.|.++++.
T Consensus       383 ~----~g------~~~iRis~~~-----~~~~~i~~~~~~l~~~l~~  414 (418)
T 3rq1_A          383 I----AL------ANGIRIAACG-----IPKCQMTGLAEKIYNAMKS  414 (418)
T ss_dssp             E----EC------SSEEEEEGGG-----SCHHHHTTHHHHHHHHHHH
T ss_pred             e----cC------CCCeEEEEec-----CCHHHHHHHHHHHHHHHHH
Confidence            3    43      4689998542     4589999999999988764

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.92  E-value=5.9e-25  Score=226.08  Aligned_cols=326  Identities=12%  Similarity=0.091  Sum_probs=216.1

Q ss_pred             cceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHH
Q 010008           95 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE  174 (520)
Q Consensus        95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~  174 (520)
                      .+++..+.+..++ +++++...+....        |+ ..+...+++    +.+++++|.+.     .+.+++|++|+.+
T Consensus         8 ~~~l~~~~~~~~~-~~~~~~~~~~~~~--------~~-~~~~~~~l~----~~la~~~~~~~-----~~~~~~gt~a~~~   68 (374)
T 3uwc_A            8 YSYLERQFADIEP-YLNDLREFIKTAD--------FT-LGAELEKFE----KRFAALHNAPH-----AIGVGTGTDALAM   68 (374)
T ss_dssp             SCCHHHHTSSCHH-HHHHHHHHHHHTC--------CS-SCHHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHHH
T ss_pred             eeccccCCCCchH-HHHHHHHHHHcCC--------cc-cChhHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHH
Confidence            4556566667777 9999887775431        22 234445555    67889999873     3566889999999


Q ss_pred             HHHhh-CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC
Q 010008          175 VYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  253 (520)
Q Consensus       175 ~l~al-l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~  253 (520)
                      ++.++ ++|||+|+++++.|.++..        .+...|.  +++.++++ +++.+|++++++++++ ++++|+   ++|
T Consensus        69 ~~~~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~--~~~~~~~~-~~~~~d~~~l~~~~~~-~~~~v~---~~n  133 (374)
T 3uwc_A           69 SFKMLNIGAGDEVITCANTFIASVG--------AIVQAGA--TPVLVDSE-NGYVIDPEKIEAAITD-KTKAIM---PVH  133 (374)
T ss_dssp             HHHHTTCCTTCEEEEESSSCHHHHH--------HHHHTTC--EEEEECBC-TTSSBCGGGTGGGCCT-TEEEEC---CBC
T ss_pred             HHHHcCCCCCCEEEECCCccHHHHH--------HHHHcCC--EEEEEecC-CCCCcCHHHHHHhCCC-CceEEE---EeC
Confidence            99999 9999999999998765431        2334454  66777776 5788999999999987 888887   444


Q ss_pred             CC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccC--cccCC-CCceEEEeeCCCcchhhHH
Q 010008          254 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH--KSLRG-PRGGMIFFKKDPVLGVELE  328 (520)
Q Consensus       254 p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~h--K~l~G-prgG~I~~~~~~~~~~~l~  328 (520)
                      |+  ..|+++|.++|+++|+++|+|++|..|....+....  ..+|++++|+|  |++++ +.+|+++++++     ++.
T Consensus       134 ~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~--~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~-----~~~  206 (374)
T 3uwc_A          134 YTGNIADMPALAKIAKKHNLHIVEDACQTILGRINDKFVG--SWGQFACFSLHPLKNLNVWSDAGVIITHSD-----EYA  206 (374)
T ss_dssp             GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETT--SSSSEEEEECSSSSSSCCSSCCEEEEESCH-----HHH
T ss_pred             CcCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeecc--ccccEEEEeCCCCCcCCccceeEEEEeCCH-----HHH
Confidence            43  789999999999999999999999877553322111  13699999988  99977 56899998774     454


Q ss_pred             HhhcccCCCCC-------CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCC--CEEecCCC---CC-
Q 010008          329 SAINNAVFPGL-------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG--YKLVSGGS---DN-  395 (520)
Q Consensus       329 ~~i~~~~~p~~-------~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G--~~v~~~gt---~~-  395 (520)
                      +++......+.       ..+.+. .+.++..++.......++++.++..++++.+.+.|.+.+  +.+.....   .. 
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  285 (374)
T 3uwc_A          207 EKLRLYRNHGLINRDVCVEYGINC-RMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVF  285 (374)
T ss_dssp             HHHHHHTBTTEEETTEESSCCCBC-BCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCC
T ss_pred             HHHHHHHhcCccccCccccccccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceee
Confidence            44432211100       011110 111222222222234567778888888999999998754  66543211   11 


Q ss_pred             eeEEEEecCCCCCHHHHHHHHhhcCeEEcCCC-CCCCCC-CC----------------CCCEEEEccCCccccCCCHHHH
Q 010008          396 HLVLVDLRPMGIDGARVEKILDMASITLNKNS-VPGDKS-AL----------------VPGGIRIGSPAMTTRGFSEKEF  457 (520)
Q Consensus       396 ~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~-~Pg~~~-~~----------------~~~giRig~~~~tt~g~~~~d~  457 (520)
                      +.+.+..    .+...+.+.|.+.||.+...+ .|.... .+                ..+.+|++++..+    +++|+
T Consensus       286 ~~~~~~~----~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~----t~edi  357 (374)
T 3uwc_A          286 HIYVLRV----KYRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYL----TEEEI  357 (374)
T ss_dssp             SSEEEEE----TTHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTS----CHHHH
T ss_pred             EEEEEEc----CCHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCC----CHHHH
Confidence            1222222    156788899999999987653 111110 00                0167999877544    58999


Q ss_pred             HHHHHHHHHHHHH
Q 010008          458 VAIADFIHEGVEI  470 (520)
Q Consensus       458 ~~la~~i~~~l~~  470 (520)
                      +++++.|+++++.
T Consensus       358 ~~~~~~l~~~l~~  370 (374)
T 3uwc_A          358 NYIIKKVREFYLE  370 (374)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998763

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.92  E-value=2.8e-24  Score=223.82  Aligned_cols=328  Identities=19%  Similarity=0.169  Sum_probs=215.9

Q ss_pred             ccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHH
Q 010008           94 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  173 (520)
Q Consensus        94 ~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~  173 (520)
                      ..|+|..+++..++.|++++...+.+.        +|+.+ +..++++    +.+++++|.+.     .|.+++|++|+.
T Consensus        31 ~~id~~~~~~~~~~~v~~a~~~~~~~~--------~y~~~-~~~~~l~----~~la~~~~~~~-----~v~~~~Gt~a~~   92 (399)
T 2oga_A           31 PFLDLKAAYEELRAETDAAIARVLDSG--------RYLLG-PELEGFE----AEFAAYCETDH-----AVGVNSGMDALQ   92 (399)
T ss_dssp             CSCCHHHHHHHTHHHHHHHHHHHHHHT--------CCSSS-HHHHHHH----HHHHHHTTSSE-----EEEESCHHHHHH
T ss_pred             cccccCcCCCCCCHHHHHHHHHHHhcC--------CCCCc-hhHHHHH----HHHHHHHCCCe-----EEEecCHHHHHH
Confidence            456777777666799999998887542        12222 3344444    67888999862     466789999999


Q ss_pred             HHHHhh-CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 010008          174 EVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA  252 (520)
Q Consensus       174 ~~l~al-l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~  252 (520)
                      .++.++ ++|||+|+++++.|.+...        .+...|.  +++.++++++++.+|++++++++++ ++++|+++++ 
T Consensus        93 ~~l~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~n~-  160 (399)
T 2oga_A           93 LALRGLGIGPGDEVIVPSHTYIASWL--------AVSATGA--TPVPVEPHEDHPTLDPLLVEKAITP-RTRALLPVHL-  160 (399)
T ss_dssp             HHHHHTTCCTTCEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCSSSSSBCHHHHHHHCCT-TEEEECCBCG-
T ss_pred             HHHHHhCCCCcCEEEECCCccHHHHH--------HHHHCCC--EEEEEecCCCCCCcCHHHHHHhcCC-CCeEEEEeCC-
Confidence            999999 9999999999998765421        2334455  6667777755678999999999987 7898875432 


Q ss_pred             CCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccC--cccCCC-CceEEEeeCCCcchhhHHH
Q 010008          253 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH--KSLRGP-RGGMIFFKKDPVLGVELES  329 (520)
Q Consensus       253 ~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~h--K~l~Gp-rgG~I~~~~~~~~~~~l~~  329 (520)
                      .+...|+++|.++|+++|+++|+|++|..|....+....  ...|++++|+|  |++.++ ++|+++++++     ++.+
T Consensus       161 tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~di~~~S~~~sK~~~~~G~~g~~~~~~~-----~~~~  233 (399)
T 2oga_A          161 YGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIG--AGSSVAAFSFYPGKNLGCFGDGGAVVTGDP-----ELAE  233 (399)
T ss_dssp             GGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTEETT--CTTCEEEEECCTTSSSCCSSCCEEEEESCH-----HHHH
T ss_pred             cCCccCHHHHHHHHHHcCCEEEEECcccccCccCCeecc--cccCEEEEeCCCCccCCcCCceEEEEeCCH-----HHHH
Confidence            233789999999999999999999999777543221111  13699999995  998553 8899998743     5555


Q ss_pred             hhcccCCC-----------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCCee
Q 010008          330 AINNAVFP-----------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHL  397 (520)
Q Consensus       330 ~i~~~~~p-----------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~~  397 (520)
                      ++......           +....++....++...+++.     +++..++..++++.+.+.|.+. |+++.........
T Consensus       234 ~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~  308 (399)
T 2oga_A          234 RLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAH-----LDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDP  308 (399)
T ss_dssp             HHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHT-----HHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEEC
T ss_pred             HHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcc
Confidence            44332111           11112233333333333432     3455667777788888888774 7766432111222


Q ss_pred             EE--EEecCCCCCHHHHHHHHhhcCeEEcCCC-CCCCC-----------CCC------CCCEEEEccCCccccCCCHHHH
Q 010008          398 VL--VDLRPMGIDGARVEKILDMASITLNKNS-VPGDK-----------SAL------VPGGIRIGSPAMTTRGFSEKEF  457 (520)
Q Consensus       398 ~~--vd~~~~g~~~~~~~~~L~~~gI~v~~~~-~Pg~~-----------~~~------~~~giRig~~~~tt~g~~~~d~  457 (520)
                      ++  +.+.  ..+..++.+.|.+.||.+...+ .|.+.           ...      ..+.|||+.+..+    +++|+
T Consensus       309 ~~~~~~~~--~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~----t~edi  382 (399)
T 2oga_A          309 VWHLFTVR--TERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHL----ERPQA  382 (399)
T ss_dssp             CCSSEEEE--CSSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTC----CHHHH
T ss_pred             eeEEEEEE--CCCHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCC----CHHHH
Confidence            22  2222  2357788889999999987532 11000           000      0257999976544    58999


Q ss_pred             HHHHHHHHHHHH
Q 010008          458 VAIADFIHEGVE  469 (520)
Q Consensus       458 ~~la~~i~~~l~  469 (520)
                      +++++.|+++++
T Consensus       383 ~~~~~~l~~~~~  394 (399)
T 2oga_A          383 LRVIDAVREWAE  394 (399)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998775

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.92  E-value=3.7e-23  Score=217.26  Aligned_cols=303  Identities=13%  Similarity=0.069  Sum_probs=201.7

Q ss_pred             HHHHHHHHHHHHHcCCCCCC------CceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccc
Q 010008          139 ELETLCQKRALAAFNLDENK------WGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT  211 (520)
Q Consensus       139 ~lE~~a~~~~~~lfg~~~~~------~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~  211 (520)
                      ++.+...+++++.+|.+.+.      . -+|.+++|+ +|+.+++.++++|||+|++.+|.|.++..        .+...
T Consensus        82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~-~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~  152 (425)
T 2r2n_A           82 ELLSWLKQLQIKLHNPPTIHYPPSQGQ-MDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQ--------SLHPL  152 (425)
T ss_dssp             HHHHHHHHHHHHHHCCTTTTSCGGGTC-EEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH--------HHGGG
T ss_pred             HHHHHHHHHHHHhcCCCCccccccCCc-CcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH--------HHHHc
Confidence            44445557888888987521      0 156667776 89999999999999999999998765421        23345


Q ss_pred             cceEEEEEcccCCCCCCCCHHHHHHHhhh-----------cCCcEEEE-cCCCCCC--CCCHH---HHHHHHHHhCCEEE
Q 010008          212 SIYFESMPYRLDESTGLVDYDMLEKTAIL-----------FRPKLIIA-GASAYPR--DFDYP---RMRQIADAVGALLM  274 (520)
Q Consensus       212 g~~~~~v~~~~d~~~~~iD~d~le~~i~~-----------~~pklIi~-~~s~~p~--~~d~~---~i~~ia~~~g~~li  274 (520)
                      |.  +++.++++. + .+|+++|+++++.           .++|+|++ ..++||+  ..+.+   +|.++|+++|++||
T Consensus       153 g~--~~~~v~~~~-~-~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li  228 (425)
T 2r2n_A          153 GC--NIINVASDE-S-GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLII  228 (425)
T ss_dssp             TC--EEEEECEET-T-EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             CC--EEEEeCcCC-C-CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEE
Confidence            55  666666763 2 4899999999872           26898877 4778886  56544   89999999999999


Q ss_pred             EechhhcccccccccCCCC---C--cccEEEeccCccc-CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHH
Q 010008          275 MDMAHISGLVAASVVADPF---K--YCDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTI  348 (520)
Q Consensus       275 ~D~Ah~~gli~~~~~~~p~---~--~aDiv~~S~hK~l-~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~i  348 (520)
                      +|++|. ++.+.+....++   .  +.++++.|+||++ +|+|.|++++++      ++.+.+.........+ ++....
T Consensus       229 ~De~~~-~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~------~l~~~l~~~~~~~~~~-~~~~~q  300 (425)
T 2r2n_A          229 EDDPYY-FLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPK------PLIERVILHIQVSTLH-PSTFNQ  300 (425)
T ss_dssp             EECTTG-GGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEH------HHHHHHHHHHHTTTCS-SCHHHH
T ss_pred             EECCcc-cccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCH------HHHHHHHHHHHHhcCC-CCHHHH
Confidence            999965 444433211122   1  2358889999998 577889999998      6666665432222222 334444


Q ss_pred             HHHHHHHHHhcC----chhHHHHHHHHHHHHHHHHHHHHC--CCE-EecCCCCCeeEEEEecCCCCCHHH-HHHHHhhcC
Q 010008          349 GGLAVCLKHAQS----PEFKVYQNKVVSNCRALASRLVEL--GYK-LVSGGSDNHLVLVDLRPMGIDGAR-VEKILDMAS  420 (520)
Q Consensus       349 aala~al~~~~~----~~~~~~~~~i~~na~~l~~~L~~~--G~~-v~~~gt~~~~~~vd~~~~g~~~~~-~~~~L~~~g  420 (520)
                      +++..+|+....    ...++..+++.++++.+.+.|.+.  |+. +..+ ....++|+++.. ..+..+ +.+.|.++|
T Consensus       301 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p-~~g~~~~~~~~~-~~~~~~~~~~~l~~~g  378 (425)
T 2r2n_A          301 LMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVP-AAGMFLWIKVKG-INDVKELIEEKAVKMG  378 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCC-SBSSEEEEEETT-CSCCHHHHHTHHHHTT
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCC-CceEEEEEEeCC-CCCHHHHHHHHHHHCC
Confidence            444455654321    223556677788888999999873  763 4333 335667888853 234444 678888999


Q ss_pred             eEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          421 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       421 I~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      |.+..+...+.......+++||++..     .++++++++++.|.++++
T Consensus       379 v~v~pg~~f~~~~~~~~~~iRis~~~-----~~~~~i~~~~~~l~~~l~  422 (425)
T 2r2n_A          379 VLMLPGNAFYVDSSAPSPYLRASFSS-----ASPEQMDVAFQVLAQLIK  422 (425)
T ss_dssp             EECEEGGGGSSSTTSCCCEEEEECSS-----CCHHHHHHHHHHHHHHHH
T ss_pred             cEEechhhhcCCCCCCCCEEEEEeCC-----CCHHHHHHHHHHHHHHHH
Confidence            99964432221111134789999653     358999999999988875

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.92  E-value=9.3e-24  Score=221.68  Aligned_cols=339  Identities=14%  Similarity=0.081  Sum_probs=217.3

Q ss_pred             ccceEecCCCC-ChHHHHHHHhhhhhcc----------CCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC----CCCCC
Q 010008           94 KSLELIASENF-TSRAVMEAVGSCLTNK----------YSEGLPGKRYYGGNEYIDELETLCQKRALAAFN----LDENK  158 (520)
Q Consensus        94 ~~i~Liasen~-~~~~V~ea~~s~l~~~----------y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg----~~~~~  158 (520)
                      ..|+|..++|+ .++.+.+++.......          ...+|+..   .|   ..++++...+++.+.+|    ++++ 
T Consensus        37 ~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~---~g---~~~lr~~la~~~~~~~g~~~~~~~~-  109 (428)
T 1iay_A           37 GVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDY---HG---LPEFRKAIAKFMEKTRGGRVRFDPE-  109 (428)
T ss_dssp             SBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCT---TC---CHHHHHHHHHHHHHHTTTCSCCCTT-
T ss_pred             ceeeeccccchhhHHHHHHHHHhccccccccccccccHhhcCCCCC---CC---cHHHHHHHHHHHHHhcCCCCCCChh-
Confidence            34678777876 4567777776432100          01123321   12   34566566667777777    4454 


Q ss_pred             CceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHH
Q 010008          159 WGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEK  236 (520)
Q Consensus       159 ~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~  236 (520)
                         +|.+++|+ +++.+++.++++|||+|++++|.|.++.. .      .....|.  +++.++++.+ ++.+|++++++
T Consensus       110 ---~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~-~------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~  177 (428)
T 1iay_A          110 ---RVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNR-D------LRWRTGV--QLIPIHCESSNNFKITSKAVKE  177 (428)
T ss_dssp             ---SCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHH-H------TTTTTCC--EEEEECCCTTTTTCCCHHHHHH
T ss_pred             ---hEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHH-H------HHHhcCC--EEEEeecCCccCCcCCHHHHHH
Confidence               44557776 89999999999999999999998865421 1      1123454  5666666543 45789999999


Q ss_pred             Hhhhc-----CCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCC----Cc-------
Q 010008          237 TAILF-----RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF----KY-------  295 (520)
Q Consensus       237 ~i~~~-----~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~----~~-------  295 (520)
                      ++++.     ++++|+++.++||+  ..+   +++|.++|+++|++||+|++|.. +.+.+....++    ..       
T Consensus       178 ~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~-~~~~~~~~~~~~~~~~~~~~~~~~  256 (428)
T 1iay_A          178 AYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAA-TVFDTPQFVSIAEILDEQEMTYCN  256 (428)
T ss_dssp             HHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGG-GCCSSSCCCCHHHHHTSGGGTTSC
T ss_pred             HHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccc-cccCCCCccCHHHhccccccccCC
Confidence            88752     68988888888876  667   89999999999999999999764 33222111111    12       


Q ss_pred             cc--EEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHh--cCchhHHHHHH
Q 010008          296 CD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA--QSPEFKVYQNK  369 (520)
Q Consensus       296 aD--iv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~--~~~~~~~~~~~  369 (520)
                      .|  +++.|+||++  +|.|.|+++++++     ++.+.+.....+  .+. +....+++..+++..  ....+++..++
T Consensus       257 ~d~viv~~s~sK~~g~~Glr~G~~~~~~~-----~~~~~~~~~~~~--~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~  328 (428)
T 1iay_A          257 KDLVHIVYSLSKDMGLPGFRVGIIYSFND-----DVVNCARKMSSF--GLV-STQTQYFLAAMLSDEKFVDNFLRESAMR  328 (428)
T ss_dssp             TTSEEEEEESTTTSSCGGGCEEEEEESCH-----HHHHHHHHHHTT--SCC-CHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEecchhhcCCCCceEEEEEeCCH-----HHHHHHHHHHhc--ccC-CHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            57  8899999998  6778899999542     566655543222  122 233333333333321  01123567778


Q ss_pred             HHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCC-----CCHHHHHHHHhh-cCeEEcCCCCCCCCCCCCCCEEEEc
Q 010008          370 VVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMG-----IDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIG  443 (520)
Q Consensus       370 i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g-----~~~~~~~~~L~~-~gI~v~~~~~Pg~~~~~~~~giRig  443 (520)
                      +.++++.+.+.|.+.|++++.+ ..+.++++++....     .+..++.+.|.+ +||.+..+...+   ...++++||+
T Consensus       329 ~~~~~~~l~~~L~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~---~~~~~~iRis  404 (428)
T 1iay_A          329 LGKRHKHFTNGLEVVGIKCLKN-NAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFE---CQEPGWFRVC  404 (428)
T ss_dssp             HHHHHHHHHHHHHHTTCCBCCC-SSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGT---CSSSSEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCcccCC-CeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhC---CCCCCEEEEE
Confidence            8888999999998888876543 23456777775321     123456666654 599996432111   1125689999


Q ss_pred             cCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          444 SPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       444 ~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +..     .++++++++++.|+++++
T Consensus       405 ~~~-----~~~e~i~~~~~~l~~~l~  425 (428)
T 1iay_A          405 FAN-----MDDGTVDIALARIRRFVG  425 (428)
T ss_dssp             CSS-----SCHHHHHHHHHHHHHHHH
T ss_pred             Eec-----CCHHHHHHHHHHHHHHHh
Confidence            752     358999999999998875

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.92  E-value=2.3e-25  Score=229.55  Aligned_cols=320  Identities=13%  Similarity=0.072  Sum_probs=209.3

Q ss_pred             CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-CC
Q 010008          103 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LK  181 (520)
Q Consensus       103 n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al-l~  181 (520)
                      +.+++.+++++...+...+         |...+...++|    +.+++++|.+.     .+.+.||++|+..++.++ ++
T Consensus        13 ~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~l~----~~la~~~~~~~-----~i~~~sgt~al~~~l~~l~~~   74 (373)
T 3frk_A           13 DEIEYEIKFKFEEIYKRNW---------FILGDEDKKFE----QEFADYCNVNY-----CIGCGNGLDALHLILKGYDIG   74 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTC---------CSSSHHHHHHH----HHHHHHHTSSE-----EEEESCHHHHHHHHHHHTTCC
T ss_pred             CCCCHHHHHHHHHHHHCCC---------ccCCchHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHcCCC
Confidence            3457888888887776432         12224455555    67888999863     356688999999999999 99


Q ss_pred             CCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHH
Q 010008          182 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPR  261 (520)
Q Consensus       182 pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~~  261 (520)
                      |||+|+++++.|.+...        .+...|.  +++.++++++++.+|++++++++++ ++++|++.++ .+...|+++
T Consensus        75 ~gd~Vi~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~n~-~G~~~~l~~  142 (373)
T 3frk_A           75 FGDEVIVPSNTFIATAL--------AVSYTGA--KPIFVEPDIRTYNIDPSLIESAITE-KTKAIIAVHL-YGQPADMDE  142 (373)
T ss_dssp             TTCEEEEETTSCTHHHH--------HHHHHSC--EEEEECEETTTTEECGGGTGGGCCT-TEEEEEEECC-TTCCCCHHH
T ss_pred             CcCEEEECCCCcHHHHH--------HHHHcCC--EEEEEeccccccCcCHHHHHHhcCC-CCeEEEEECC-CcCcccHHH
Confidence            99999999998866431        2334454  6777778767789999999999987 8998885432 334789999


Q ss_pred             HHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccC--cccCC-CCceEEEeeCCCcchhhHHHhhcccCCCC
Q 010008          262 MRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH--KSLRG-PRGGMIFFKKDPVLGVELESAINNAVFPG  338 (520)
Q Consensus       262 i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~h--K~l~G-prgG~I~~~~~~~~~~~l~~~i~~~~~p~  338 (520)
                      |.++|+++|++||+|++|..|....+....  ..+|++++|+|  |++++ ++||+++++++     ++.+++......+
T Consensus       143 i~~l~~~~~~~li~D~a~~~g~~~~~~~~~--~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~-----~~~~~~~~~~~~g  215 (373)
T 3frk_A          143 IKRIAKKYNLKLIEDAAQAHGSLYKGMKVG--SLGDAAGFSFYPAKNLGSLGDGGAVVTNDK-----DLAEKIKALSNYG  215 (373)
T ss_dssp             HHHHHHHHTCEEEEECTTCTTCEETTEETT--SSSSEEEEECCTTSSSCCSSSCEEEEESCH-----HHHHHHHHHHBTT
T ss_pred             HHHHHHHcCCEEEEECCcccCCEECCEecc--ccccEEEEeCcCCCccCccceeEEEEeCCH-----HHHHHHHHHHhcC
Confidence            999999999999999999887663322111  13689988855  99987 67899999873     4544443221111


Q ss_pred             --------CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCC--CCC--eeEEEEecCCC
Q 010008          339 --------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG--SDN--HLVLVDLRPMG  406 (520)
Q Consensus       339 --------~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~g--t~~--~~~~vd~~~~g  406 (520)
                              ..|.+.  .+.++..++.......+++..++..++++++.+.|.+.++.+....  ...  +.+.+..    
T Consensus       216 ~~~~~~~~~~g~~~--~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----  289 (373)
T 3frk_A          216 SEKKYHHIYKGFNS--RLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPNVIIPVEADYAKHVWYTFVIRS----  289 (373)
T ss_dssp             CSBTTBCCSCCCBC--CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTEECCCCCTTEECCCSSEEEEE----
T ss_pred             cccCCccccccccC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEeccCCCCCceeeEEEEEEe----
Confidence                    011100  0111112222221234566677778888888888877664443211  111  2222222    


Q ss_pred             CCHHHHHHHHhhcCeEEcCCC-CCCCCCC-----------C------CCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          407 IDGARVEKILDMASITLNKNS-VPGDKSA-----------L------VPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       407 ~~~~~~~~~L~~~gI~v~~~~-~Pg~~~~-----------~------~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      .+.+.+.+.|.+.||.++..+ .|.+..+           +      ..+.||+++...    ++++|++++++.|++..
T Consensus       290 ~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~----~t~~di~~~~~~l~~~~  365 (373)
T 3frk_A          290 EKRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYG----MKNEEIEYVIDKINAWK  365 (373)
T ss_dssp             SSHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTT----CCHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCC----CCHHHHHHHHHHHHHHh
Confidence            157889999999999998653 2221100           0      016799987754    45999999999987654


Q ss_pred             H
Q 010008          469 E  469 (520)
Q Consensus       469 ~  469 (520)
                      .
T Consensus       366 ~  366 (373)
T 3frk_A          366 L  366 (373)
T ss_dssp             -
T ss_pred             h
Confidence            3

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.92  E-value=7.9e-24  Score=217.82  Aligned_cols=325  Identities=13%  Similarity=0.034  Sum_probs=216.4

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceeeecCCh-
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSG-  168 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V~~~sG-  168 (520)
                      +.|+|..+++.  .|+.|++++...+..  ..+|+..   .|   ..++++...+++.+.+|+  +++    +|.+++| 
T Consensus        24 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~---~g---~~~lr~~la~~l~~~~g~~~~~~----~i~~t~g~   91 (376)
T 3ezs_A           24 RGLDLGIGEPQFETPKFIQDALKNHTHS--LNIYPKS---AF---EESLRAAQRGFFKRRFKIELKEN----ELISTLGS   91 (376)
T ss_dssp             CCCBCSSCCCCSCCCHHHHHHHHTTGGG--GGSCCCT---TC---CHHHHHHHHHHHHHHHSCCCCGG----GEEEESSS
T ss_pred             CEEEeCCCCCCCCCCHHHHHHHHHhhhh--cCCCCCC---CC---CHHHHHHHHHHHHHHhCCCCCHH----HEEECcCc
Confidence            45788777763  579999999887732  2234431   11   235565666788888898  454    3444554 


Q ss_pred             HHHHHHHHHhhCCC--CCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEE
Q 010008          169 SPANFEVYTAILKP--HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       169 s~A~~~~l~all~p--GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklI  246 (520)
                      ++|+..++.++++|  ||+|++.+|.|.++..        .+...|.  +++.++++.+ +.+++ ++++.+.+ ++++|
T Consensus        92 ~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~-~~~~~-~l~~~~~~-~~~~v  158 (376)
T 3ezs_A           92 REVLFNFPSFVLFDYQNPTIAYPNPFYQIYEG--------AAKFIKA--KSLLMPLTKE-NDFTP-SLNEKELQ-EVDLV  158 (376)
T ss_dssp             HHHHHHHHHHHTTTCSSCEEEEEESCCTHHHH--------HHHHTTC--EEEEEECCGG-GTSCC-CCCHHHHH-HCSEE
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEecCCcHhHHH--------HHHHcCC--EEEEcccCCC-CCcch-hHHhhhcc-CCCEE
Confidence            59999999999999  9999999998765421        2233454  5666666533 23444 66667766 79999


Q ss_pred             EEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCC----------CCcccEEEeccCccc--CC
Q 010008          247 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP----------FKYCDVVTTTTHKSL--RG  309 (520)
Q Consensus       247 i~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p----------~~~aDiv~~S~hK~l--~G  309 (520)
                      +++.++||+  ..+   +++|+++|+++|++||+|++|.. +...+.....          ....++++.|+||++  +|
T Consensus       159 ~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G  237 (376)
T 3ezs_A          159 ILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSE-IYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPG  237 (376)
T ss_dssp             EECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGG
T ss_pred             EEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchh-hccCCCCCCHHHccccccccccCcEEEEecchhccCCcc
Confidence            999888886  455   66777889999999999999654 3333311111          113568899999997  67


Q ss_pred             CCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEe
Q 010008          310 PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLV  389 (520)
Q Consensus       310 prgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~  389 (520)
                      .|.|++++++      ++.+.+....... ..+++....+++..+++.  ....++..+++.++++.+.+.|.  |+.  
T Consensus       238 ~r~G~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~--~~~--  304 (376)
T 3ezs_A          238 LRSGFIAGDS------RLLEKYKAFRAYL-GYTSANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIFK--NTL--  304 (376)
T ss_dssp             GCCEEEEECH------HHHHHHHHHHTTT-CCCCCHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHST--TCC--
T ss_pred             ceeEEEeeCH------HHHHHHHHHHhhh-cCCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhc--CCC--
Confidence            8889999877      6776665432222 223344445554455653  23356777888888888888886  665  


Q ss_pred             cCCCCCeeEEEEecCCCCCHHHHHHHHhh-cCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          390 SGGSDNHLVLVDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       390 ~~gt~~~~~~vd~~~~g~~~~~~~~~L~~-~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      .+ ..+.++++++.    +..++.+.|.+ +||.+..+..++. ....++++||++..      +++|++++++.|.+++
T Consensus       305 ~~-~~~~~~~~~~~----~~~~~~~~l~~~~gi~v~~g~~~~~-~~~~~~~iRis~~~------~~~~i~~~l~~l~~~l  372 (376)
T 3ezs_A          305 IY-PYSFYVYLPVQ----NGENFAKTLYQNEGIITLPALYLGR-NRIGADYVRLALVY------DTPLLEKPLEIIETYR  372 (376)
T ss_dssp             CC-SBSSEEEEECS----CHHHHHHHHHHHHCCBCEEGGGGCS-TTTTTTEEEEECCS------CHHHHHHHHHHHHHHH
T ss_pred             CC-CcceEEEEECC----CHHHHHHHHHHhCCEEEeCcHHhCC-CCCCCCeEEEEEcC------CHHHHHHHHHHHHHHH
Confidence            22 23456777774    56777777765 9999864432221 12346799998652      5899999999998876


Q ss_pred             H
Q 010008          469 E  469 (520)
Q Consensus       469 ~  469 (520)
                      +
T Consensus       373 ~  373 (376)
T 3ezs_A          373 E  373 (376)
T ss_dssp             C
T ss_pred             H
Confidence            4

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.92  E-value=1.8e-23  Score=220.08  Aligned_cols=339  Identities=15%  Similarity=0.089  Sum_probs=215.9

Q ss_pred             ccceEecCCCC-ChHHHHHHHhhhhhccC-C----------CCCCCCCCCCcchhHHHHHHHHHHHHHHHcC----CCCC
Q 010008           94 KSLELIASENF-TSRAVMEAVGSCLTNKY-S----------EGLPGKRYYGGNEYIDELETLCQKRALAAFN----LDEN  157 (520)
Q Consensus        94 ~~i~Liasen~-~~~~V~ea~~s~l~~~y-~----------~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg----~~~~  157 (520)
                      ..|+|..++|+ ..+.+.+++........ .          .+|+.      .....++++...+++.+.+|    ++++
T Consensus        39 ~~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~------~~g~~~l~~~la~~~~~~~~~~~~~~~~  112 (435)
T 3piu_A           39 GIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQD------YHGLPAFKKAMVDFMAEIRGNKVTFDPN  112 (435)
T ss_dssp             SBEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCC------TTCCHHHHHHHHHHHHHHTTTSSCCCGG
T ss_pred             CeEEeccccccccHHHHHHHHHhCccccccccccccccccccccCC------CCCcHHHHHHHHHHHHHhhCCCCCCCHH
Confidence            35788888886 56677777765443111 0          12322      22234666555556655554    4454


Q ss_pred             CCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccc-cccceEEEEEcccCCC-CCCCCHHHH
Q 010008          158 KWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS-GTSIYFESMPYRLDES-TGLVDYDML  234 (520)
Q Consensus       158 ~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~-~~g~~~~~v~~~~d~~-~~~iD~d~l  234 (520)
                          +|.+++|+ +||.+++.++++|||+|++.+|.|.++..        .+. ..|.  +++.++++++ ++.+|+++|
T Consensus       113 ----~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~--------~~~~~~g~--~~~~~~~~~~~~~~~d~~~l  178 (435)
T 3piu_A          113 ----HLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDR--------DLKWRTGV--EIVPIHCTSSNGFQITETAL  178 (435)
T ss_dssp             ----GEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HTTTTTCC--EEEEEECCGGGTSCCCHHHH
T ss_pred             ----HEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHH--------HHHHhcCC--EEEEeeCCCccCCcCCHHHH
Confidence                34456655 99999999999999999999998865531        122 3455  5666666543 357899999


Q ss_pred             HHHhhhc-----CCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--c-------
Q 010008          235 EKTAILF-----RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--Y-------  295 (520)
Q Consensus       235 e~~i~~~-----~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~-------  295 (520)
                      ++++++.     ++++|+++.++||+  ..+   +++|+++|+++|++||+|++|..+ .+.+....++.  .       
T Consensus       179 ~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~-~~~~~~~~~~~~~~~~~~~d~  257 (435)
T 3piu_A          179 EEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGT-AFSSPSFISVMEVLKDRNCDE  257 (435)
T ss_dssp             HHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGG-CCSSSCCCCHHHHHHC-----
T ss_pred             HHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCCCCCcCHHHhcccccccc
Confidence            9998763     78999998888886  444   578888999999999999997543 33322111110  0       


Q ss_pred             ----cc--EEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc--CchhHH
Q 010008          296 ----CD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ--SPEFKV  365 (520)
Q Consensus       296 ----aD--iv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~--~~~~~~  365 (520)
                          .|  +++.|+||++  +|.|.|+++++++     ++.+.+......+  + .+....++++.++....  ....++
T Consensus       258 ~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~-----~~~~~~~~~~~~~--~-~~~~~~~~~~~~l~~~~~~~~~~~~  329 (435)
T 3piu_A          258 NSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDD-----MVVAAATKMSSFG--L-VSSQTQHLLSAMLSDKKLTKNYIAE  329 (435)
T ss_dssp             --CGGGGEEEEEESSSSSCCGGGCEEEEEESCH-----HHHHHHHHHGGGS--C-CCHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             ccCCCCCEEEEEeeecccCCCceeEEEEEeCCH-----HHHHHHHHHhhcC--C-CCHHHHHHHHHHhcChHHHHHHHHH
Confidence                12  8889999987  6778899999653     5555554332221  1 12223333333343210  112356


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCC-----CHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCE
Q 010008          366 YQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGI-----DGARVEKIL-DMASITLNKNSVPGDKSALVPGG  439 (520)
Q Consensus       366 ~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~-----~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~g  439 (520)
                      ..+++.++++.+.+.|.+.|++++.+ ..++++++++.....     +..++.+.| +++||.+..+..+   .+..++.
T Consensus       330 ~~~~~~~~~~~l~~~L~~~g~~~~~~-~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~---~~~~~~~  405 (435)
T 3piu_A          330 NHKRLKQRQKKLVSGLQKSGISCLNG-NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSC---HCTEPGW  405 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCEECCC-CSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGG---TCSSTTE
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcccCC-CeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCccc---CCCCCCE
Confidence            67778888899999998889987754 234667887753210     223444444 5669998543221   2234679


Q ss_pred             EEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          440 IRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       440 iRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +||++..+     ++++++++++.|.++++.
T Consensus       406 iRi~~~~~-----~~e~i~~~l~~l~~~l~~  431 (435)
T 3piu_A          406 FRVCFANL-----PERTLDLAMQRLKAFVGE  431 (435)
T ss_dssp             EEEECSSS-----CHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeeCC-----CHHHHHHHHHHHHHHHHH
Confidence            99997533     479999999999988764

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.92  E-value=5.1e-23  Score=221.67  Aligned_cols=304  Identities=11%  Similarity=0.065  Sum_probs=217.6

Q ss_pred             hhHHHHHHHHHHHHHHHcCCCC--CCCceeeecCChHHHHHHHHHhhCCCC--------CEEEEcCCCCCcccccccccc
Q 010008          135 EYIDELETLCQKRALAAFNLDE--NKWGVNVQPLSGSPANFEVYTAILKPH--------DRIMGLDLPHGGHLSHGFMTP  204 (520)
Q Consensus       135 ~~~d~lE~~a~~~~~~lfg~~~--~~~~~~V~~~sGs~A~~~~l~all~pG--------D~Vl~~~~~~~ghls~g~~~~  204 (520)
                      +...++|...++++++++|++.  +++ ..+.+++|++|+..++.++.++|        |+|++..+.|.+..       
T Consensus       135 p~~~~le~~l~~~la~~~g~~~~~~~v-~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~-------  206 (514)
T 3mad_A          135 PSTAKFEAEVVAMTAHMLGGDAAGGTV-CGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFD-------  206 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTTGGGGTSCC-EEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHH-------
T ss_pred             hHHHHHHHHHHHHHHHHcCCCCccCCc-ceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHH-------
Confidence            4456788888899999999984  322 11444566699999999998877        99999998776532       


Q ss_pred             ccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcc
Q 010008          205 KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISG  282 (520)
Q Consensus       205 ~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~g  282 (520)
                       +.+...|.  +++.++++. ++.+|+++|++++++ ++++|+++.++||+  ..|+++|+++|+++|++||+|++|..+
T Consensus       207 -~~~~~~G~--~v~~v~~~~-~~~~d~~~Le~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~  281 (514)
T 3mad_A          207 -KAAQYFGI--KLVRTPLDA-DYRADVAAMREAITP-NTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGF  281 (514)
T ss_dssp             -HHHHHHTC--EEEEECBCT-TSCBCHHHHHHHCCT-TEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred             -HHHHHcCC--eeEEeeeCC-CCCCCHHHHHHHhcc-CCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccc
Confidence             13344565  566677764 788999999999987 89999999888865  789999999999999999999997654


Q ss_pred             ccc----ccccCCCC----CcccEEEeccCcccCCC-CceEEEeeCCCcchhhHHHhhcc---------cCCCCCCCCCh
Q 010008          283 LVA----ASVVADPF----KYCDVVTTTTHKSLRGP-RGGMIFFKKDPVLGVELESAINN---------AVFPGLQGGPH  344 (520)
Q Consensus       283 li~----~~~~~~p~----~~aDiv~~S~hK~l~Gp-rgG~I~~~~~~~~~~~l~~~i~~---------~~~p~~~g~p~  344 (520)
                      ...    .+....++    .++|++++|+||++.|+ +.|+++++++     .+......         ...+...|++.
T Consensus       282 ~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~gs~~  356 (514)
T 3mad_A          282 ILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRP-----DLLHYQYFIAADWPGGLYFSPTFAGSRP  356 (514)
T ss_dssp             THHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSH-----HHHTTTCEEESSCTTCSEEESSSCSSCC
T ss_pred             cchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCH-----HHhccccccccccCCCcccCCccCCCCc
Confidence            331    11100112    26899999999997555 4599999873     22221100         01123356666


Q ss_pred             HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEE
Q 010008          345 NHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITL  423 (520)
Q Consensus       345 ~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v  423 (520)
                      ...++++.++++.+...++++..+++.++++++.+.|.+. |++++.+.  ..++++..  .+.+..++.+.|.+.||.+
T Consensus       357 ~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~~~~~~~~--~~~~~~~l~~~L~~~Gi~v  432 (514)
T 3mad_A          357 GALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP--LWVIAVAS--DELNIYQVMEEMAGRGWRL  432 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC--SSEEEEEC--SSSCHHHHHHHHHTTTCBC
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC--eEEEEEeC--CCCCHHHHHHHHHhcCCEe
Confidence            6666677777776655567888999999999999999884 88887653  23444433  4567788889998899987


Q ss_pred             cCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          424 NKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       424 ~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      ...        ..+..+|++.....   .++++++++.+.|+++++..
T Consensus       433 ~g~--------~~~~~~Ri~~~~~~---~~~e~i~~~l~~L~~~l~~~  469 (514)
T 3mad_A          433 NGL--------HRPPAFHVALTLRH---TEPGVVDRFLADLQDAVAQV  469 (514)
T ss_dssp             EEE--------TTTTEEEEECCGGG---GSTTHHHHHHHHHHHHHHHH
T ss_pred             ccC--------CCCCeEEEEEecCC---CCHHHHHHHHHHHHHHHHHH
Confidence            221        12467999865333   34689999999999988754

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.92  E-value=1.8e-23  Score=217.41  Aligned_cols=331  Identities=17%  Similarity=0.156  Sum_probs=219.6

Q ss_pred             ceEecCCC-C--ChHHHHHHHhhhhhccCCCCCCCCC-CCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHH
Q 010008           96 LELIASEN-F--TSRAVMEAVGSCLTNKYSEGLPGKR-YYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA  171 (520)
Q Consensus        96 i~Liasen-~--~~~~V~ea~~s~l~~~y~~G~p~~r-yy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A  171 (520)
                      +++..+++ .  .+|.|++++...+.+.. .+..+.+ .|+..+..++++    +.+++++|.+ +    +|.+++|+++
T Consensus        49 i~~~~~~~~~~~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~----~~la~~~~~~-~----~i~~~sG~~a  118 (401)
T 2bwn_A           49 TVWCGNDYLGMGQHPVVLAAMHEALEAVG-AGSGGTRNISGTTAYHRRLE----AEIAGLHQKE-A----ALVFSSAYNA  118 (401)
T ss_dssp             EECSCSCTTSGGGCHHHHHHHHHHHHHHC-SCCCSBTTTBCCBHHHHHHH----HHHHHHTTCS-E----EEEESCHHHH
T ss_pred             EEeeCCCcccCCCCHHHHHHHHHHHHHcC-CCCCCcCcccCChHHHHHHH----HHHHHHhCCC-c----EEEECCcHHH
Confidence            44444444 1  36789999988876422 1111111 233334444444    6788899974 2    5667999998


Q ss_pred             HHHHHHhhC--CCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh---cCCcEE
Q 010008          172 NFEVYTAIL--KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLI  246 (520)
Q Consensus       172 ~~~~l~all--~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~---~~pklI  246 (520)
                      +..++.++.  +|||+|++.++.|++...        .+...|.  +++.++.+      |+++++++++.   .++++|
T Consensus       119 ~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~------d~~~le~~l~~~~~~~~~~v  182 (401)
T 2bwn_A          119 NDATLSTLRVLFPGLIIYSDSLNHASMIE--------GIKRNAG--PKRIFRHN------DVAHLRELIAADDPAAPKLI  182 (401)
T ss_dssp             HHHHHHHHHHHSTTCEEEEETTCCHHHHH--------HHHHSCC--CEEEECTT------CHHHHHHHHHHSCTTSCEEE
T ss_pred             HHHHHHHHhcCCCCCEEEECchhhHHHHH--------HHHHcCC--eEEEEcCC------CHHHHHHHHHhhccCCceEE
Confidence            888877653  699999999988765431        2233454  45555542      78999988873   278999


Q ss_pred             EEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccc-cc--c--CCCCCcccEEEeccCcccCCCCceEEEeeC
Q 010008          247 IAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAA-SV--V--ADPFKYCDVVTTTTHKSLRGPRGGMIFFKK  319 (520)
Q Consensus       247 i~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~-~~--~--~~p~~~aDiv~~S~hK~l~GprgG~I~~~~  319 (520)
                      ++++++||+  ..|+++|.++|+++|+++|+|++|..|.... +.  .  ....+..|+++.|++|++.+ .||++++++
T Consensus       183 ~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~-~GG~~~~~~  261 (401)
T 2bwn_A          183 AFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGV-FGGYIAASA  261 (401)
T ss_dssp             EEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCS-CCEEEEECH
T ss_pred             EEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccC-CCCEEecCH
Confidence            999888875  7899999999999999999999998665321 11  0  01011358999999999864 469998876


Q ss_pred             CCcchhhHHHhhcccC--CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCee
Q 010008          320 DPVLGVELESAINNAV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHL  397 (520)
Q Consensus       320 ~~~~~~~l~~~i~~~~--~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~  397 (520)
                            ++.+.+....  +....+++. ..++++..+++.....++++..+++.++++++.+.|.+.|++++.+  ..++
T Consensus       262 ------~~~~~l~~~~~~~~~~~~~~~-~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~~  332 (401)
T 2bwn_A          262 ------RMVDAVRSYAPGFIFSTSLPP-AIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDH--GSHI  332 (401)
T ss_dssp             ------HHHHHHHHHCHHHHTSBCCCH-HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC--SSSC
T ss_pred             ------HHHHHHHHhCcCceecCCCCH-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCCCcccCC--CCCe
Confidence                  5655544211  111234444 5556666678776544457788899999999999998878877653  2356


Q ss_pred             EEEEecCCCCCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          398 VLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       398 ~~vd~~~~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +++++.. +.+..++.+.| ++.||.+.....|+.  +...+.+|++.+..+    +++|++++++.|+++++
T Consensus       333 ~~~~~~~-~~~~~~~~~~L~~~~gi~v~~~~~~~~--~~~~~~iRis~~~~~----t~~~i~~~~~~l~~~~~  398 (401)
T 2bwn_A          333 VPVVIGD-PVHTKAVSDMLLSDYGVYVQPINFPTV--PRGTERLRFTPSPVH----DLKQIDGLVHAMDLLWA  398 (401)
T ss_dssp             EEEECCC-HHHHHHHHHHHHHHHCEECCEECTTTS--CTTCCEEEECCCTTS----CHHHHHHHHHHHHHHC-
T ss_pred             EEEEeCC-hHHHHHHHHHHHhcCCEEEeecCCCCC--CCCCceEEEEeeCCC----CHHHHHHHHHHHHHHHH
Confidence            7777642 23455677777 589999954332221  112358999987543    58999999999988764

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.92  E-value=8.2e-23  Score=217.99  Aligned_cols=327  Identities=16%  Similarity=0.136  Sum_probs=214.9

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh----C
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI----L  180 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al----l  180 (520)
                      ..|.+.+++.+.++ .|. -|....   ..+...+++...++++++++|++.    ..+.+.+|++|+.+++.++    .
T Consensus        78 ~~p~v~~~~~~~~~-~~~-~~~~~~---~~~g~~~l~~~l~~~la~~~g~~~----~~~~~~ggt~a~~~al~~~~~~~~  148 (474)
T 1wyu_B           78 YNPKLHEEAARLFA-DLH-PYQDPR---TAQGALRLMWELGEYLKALTGMDA----ITLEPAAGAHGELTGILIIRAYHE  148 (474)
T ss_dssp             CCCHHHHHHHHTTS-SCC-TTSCGG---GCHHHHHHHHHHHHHHHHHHTCSE----EECCCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH-hcC-CCCchh---hChHHHHHHHHHHHHHHHHHCCCc----eeecChHHHHHHHHHHHHHHHHHH
Confidence            34677777766532 221 111100   122234555667789999999975    2345577779998766554    4


Q ss_pred             CCCC-----EEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC
Q 010008          181 KPHD-----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR  255 (520)
Q Consensus       181 ~pGD-----~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~  255 (520)
                      ++||     +|+++++.|+.+..        .+...|.  +++.++++ +++.+|+++|++++++ ++++|+++++|+.+
T Consensus       149 ~~Gd~~~r~~Vlv~~~~h~~~~~--------~~~~~G~--~vv~v~~~-~~~~~d~~~L~~~i~~-~t~~v~~~~pn~~G  216 (474)
T 1wyu_B          149 DRGEGRTRRVVLVPDSAHGSNPA--------TASMAGY--QVREIPSG-PEGEVDLEALKRELGP-HVAALMLTNPNTLG  216 (474)
T ss_dssp             HTTCTTTCCEEEEETTSCTHHHH--------HHHHTTC--EEEEECBC-TTSSBCHHHHHHHCST-TEEEEEECSSCTTS
T ss_pred             hcCCccCCCEEEEeCCcChhhHH--------HHHHCCC--EEEEecCC-CCCCcCHHHHHHhhCC-CceEEEEECCCCCc
Confidence            6898     99999987765431        2344565  66777776 4688999999999987 79999998876434


Q ss_pred             -C-CCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEEEeccCcccCCC------CceEEEeeCCCcchhh
Q 010008          256 -D-FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGP------RGGMIFFKKDPVLGVE  326 (520)
Q Consensus       256 -~-~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S~hK~l~Gp------rgG~I~~~~~~~~~~~  326 (520)
                       . .|+++|+++|+++|+++++|++|..+..  +.. .+.. ++|++++|+||+|.+|      +.|++++++      +
T Consensus       217 ~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~--g~~-~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~------~  287 (474)
T 1wyu_B          217 LFERRILEISRLCKEAGVQLYYDGANLNAIM--GWA-RPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKA------H  287 (474)
T ss_dssp             CCCTTHHHHHHHHHHHTCEEEEEGGGGGGTT--TTC-CHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECG------G
T ss_pred             ccCCCHHHHHHHHHHcCCEEEEeCchhhhhc--cCC-CcccCCCcEEEEeCccccccCCCCCCCCeEEEEEcH------H
Confidence             4 5899999999999999999999865543  111 1111 5899999999998654      679999988      4


Q ss_pred             HHHhhcccC-------C------C-----CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEE
Q 010008          327 LESAINNAV-------F------P-----GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL  388 (520)
Q Consensus       327 l~~~i~~~~-------~------p-----~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v  388 (520)
                      +.+.+....       +      +     ...++++...+++....+......++++..+++.++++++.+.|.+.|+++
T Consensus       288 l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~g~~~  367 (474)
T 1wyu_B          288 LAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRV  367 (474)
T ss_dssp             GGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBC
T ss_pred             HHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcEe
Confidence            555443100       0      0     011122332222222234333234567778889999999999998888887


Q ss_pred             ecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          389 VSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       389 ~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      ..++...+.+++++ +.+.+..++.+.|.+.||.+.....|    ....+.+||+....+    +++|++++++.|++++
T Consensus       368 ~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~Gi~~~~~~~~----~~~~~~lRis~~~~~----t~e~id~~~~~L~~~~  438 (474)
T 1wyu_B          368 PYDGPSMHEFVAQP-PEGFRALDLAKGLLELGFHPPTVYFP----LIVKEALMVEPTETE----AKETLEAFAEAMGALL  438 (474)
T ss_dssp             SSCSSCCSCEEEBC-STTCCHHHHHHHHHHTTCCCCEESCS----TTSTTCEEECCCTTS----CHHHHHHHHHHHHHHH
T ss_pred             cCCCCcceEEEEEc-CCCCCHHHHHHHHHHCCccccccccc----cccCCEEEEEeecCC----CHHHHHHHHHHHHHHH
Confidence            44332233356666 34567788888888889975211111    113578999876433    4899999999999887


Q ss_pred             HH
Q 010008          469 EI  470 (520)
Q Consensus       469 ~~  470 (520)
                      +.
T Consensus       439 ~~  440 (474)
T 1wyu_B          439 KK  440 (474)
T ss_dssp             TS
T ss_pred             Hh
Confidence            54

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.92  E-value=8e-24  Score=235.43  Aligned_cols=301  Identities=14%  Similarity=0.120  Sum_probs=210.4

Q ss_pred             HHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEccc
Q 010008          144 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL  222 (520)
Q Consensus       144 a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~  222 (520)
                      ++++++++||++.     .+.+++|+ +||.++++++++|||+|++..+.|.+++. ++      +...|.  +++.++.
T Consensus       178 ~e~~lA~~~gae~-----~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~-~~------~~l~Ga--~~v~v~~  243 (730)
T 1c4k_A          178 AEKHAARVYNADK-----TYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYN-SA------LAMAGG--RPVYLQT  243 (730)
T ss_dssp             HHHHHHHHTTCSE-----EEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHH-HH------TTTTCC--EEEEECE
T ss_pred             HHHHHHHHHCCCc-----EEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHH-HH------HHHCCC--EEEEEeC
Confidence            4478999999985     24568887 89999999999999999999998765431 10      334565  4454444


Q ss_pred             CCCC----CCCCHHHH-----HHHhhhcC-----C----cEEEEcCCCCCC-CCCHHHHHHHHHHhCCEEEEechhhccc
Q 010008          223 DEST----GLVDYDML-----EKTAILFR-----P----KLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGL  283 (520)
Q Consensus       223 d~~~----~~iD~d~l-----e~~i~~~~-----p----klIi~~~s~~p~-~~d~~~i~~ia~~~g~~li~D~Ah~~gl  283 (520)
                      +.++    +.+|+++|     ++++++..     +    |+|+++.+++.+ ..|+++|+++|+++|++|++|+||..++
T Consensus       244 ~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn~~G~v~dl~~I~~la~~~g~~livDeAh~~~~  323 (730)
T 1c4k_A          244 NRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYE  323 (730)
T ss_dssp             EECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGG
T ss_pred             CccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCCCCCeecCHHHHHHHHHHcCCeEEEEccccccc
Confidence            3222    33688887     88887630     3    888888776544 7899999999999999999999997665


Q ss_pred             cccccc--CCCCC----ccc----EEEeccCcccCCCCc-eEEEeeCCCcch-hhH--HHhhcccCCCCCCCCChHHHHH
Q 010008          284 VAASVV--ADPFK----YCD----VVTTTTHKSLRGPRG-GMIFFKKDPVLG-VEL--ESAINNAVFPGLQGGPHNHTIG  349 (520)
Q Consensus       284 i~~~~~--~~p~~----~aD----iv~~S~hK~l~Gprg-G~I~~~~~~~~~-~~l--~~~i~~~~~p~~~g~p~~~~ia  349 (520)
                      .+.+..  .+++.    ++|    ++++|+||+|+|+++ |+|+++++.... ..+  ..+++........++|+...++
T Consensus       324 ~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~~~~ia  403 (730)
T 1c4k_A          324 QFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYA  403 (730)
T ss_dssp             GSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHH
T ss_pred             ccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCcHHHHH
Confidence            433221  12331    577    999999999999886 788777641000 000  1122222111235678888999


Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH--CCCEEecCCC----------------------------------
Q 010008          350 GLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE--LGYKLVSGGS----------------------------------  393 (520)
Q Consensus       350 ala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~--~G~~v~~~gt----------------------------------  393 (520)
                      ++.+|++.+..++..++.++..++++.+++.|.+  .|++++.+..                                  
T Consensus       404 al~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  483 (730)
T 1c4k_A          404 ALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEG  483 (730)
T ss_dssp             HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTT
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccchhccccc
Confidence            9988888765434577889999999999999988  6888864311                                  


Q ss_pred             --CCe--e----EEEEe----------cCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHH
Q 010008          394 --DNH--L----VLVDL----------RPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK  455 (520)
Q Consensus       394 --~~~--~----~~vd~----------~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~  455 (520)
                        +++  +    +++.+          ...|+++..+.+.|++.||.+++.         ....+|+.++    .|.+++
T Consensus       484 ~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~---------~~~~ir~~~s----~g~t~e  550 (730)
T 1c4k_A          484 YGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKS---------DLNSILFLMT----PAETPA  550 (730)
T ss_dssp             CCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEE---------CSSEEEEECC----TTCCHH
T ss_pred             cCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEEC---------CCCeEEEEeC----CCCCHH
Confidence              111  1    34444          234678899999999999988542         2467898765    455689


Q ss_pred             HHHHHHHHHHHHHHHH
Q 010008          456 EFVAIADFIHEGVEIT  471 (520)
Q Consensus       456 d~~~la~~i~~~l~~~  471 (520)
                      |++++++.|.++.+..
T Consensus       551 ~i~~Ll~aL~~i~~~~  566 (730)
T 1c4k_A          551 KMNNLITQLLQLQRLI  566 (730)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999887643

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.92  E-value=1.8e-23  Score=218.46  Aligned_cols=341  Identities=15%  Similarity=0.110  Sum_probs=219.5

Q ss_pred             ccceEecCC------CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHc------C--CCCCCC
Q 010008           94 KSLELIASE------NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF------N--LDENKW  159 (520)
Q Consensus        94 ~~i~Liase------n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lf------g--~~~~~~  159 (520)
                      +.|+|..+.      .++++.|++++...+.+....+|+.      .....++++...+++.+.|      |  ++++  
T Consensus        34 ~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~--  105 (416)
T 1bw0_A           34 PIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFP------TVGSPEAREAVATWWRNSFVHKEELKSTIVKD--  105 (416)
T ss_dssp             CCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCC------TTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGG--
T ss_pred             CeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCC------CCCCHHHHHHHHHHHHhhhcccccCCCCCCcc--
Confidence            457776554      2468999999988876432234432      1112355544444444222      2  4443  


Q ss_pred             ceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHH
Q 010008          160 GVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKT  237 (520)
Q Consensus       160 ~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~  237 (520)
                        +|.+++|+ +|+.+++.++++|||+|++.+|.|.++..        .+...|.  +++.++++++ ++.+|+++|+++
T Consensus       106 --~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~  173 (416)
T 1bw0_A          106 --NVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYET--------VCKAYGI--GMHFYNCRPENDWEADLDEIRRL  173 (416)
T ss_dssp             --GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHTTC--EEEEEEEEGGGTTEECHHHHHHH
T ss_pred             --eEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHH--------HHHHcCc--EEEEeecCcccCCCCCHHHHHHH
Confidence              45556766 89999999999999999999998765421        2334455  5556666543 467999999999


Q ss_pred             hhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccc----cCCCCC----c-ccEEEecc
Q 010008          238 AILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV----VADPFK----Y-CDVVTTTT  303 (520)
Q Consensus       238 i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~----~~~p~~----~-aDiv~~S~  303 (520)
                      +++ ++++|+++.++||+  ..+   +++|.++|+++|++||+|++|.. +.+.+.    ...++.    . .++++.|+
T Consensus       174 l~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~  251 (416)
T 1bw0_A          174 KDD-KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAG-MVFKGKDPNATFTSVADFETTVPRVILGGT  251 (416)
T ss_dssp             CCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTT-CBCCSSCTTCCCCCTTSSCCSCCEEEEEES
T ss_pred             hcc-CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccc-cccCCCCCCCCccCHHHccCCCcEEEEecc
Confidence            987 78998888888886  666   89999999999999999999654 443332    111221    1 24778999


Q ss_pred             Cccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 010008          304 HKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRL  381 (520)
Q Consensus       304 hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L  381 (520)
                      ||++  +|.|.|+++++++......+...+.....  ...+++....+++..+|+......+++..+++.++++.+.+.|
T Consensus       252 sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  329 (416)
T 1bw0_A          252 AKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGM--LVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHI  329 (416)
T ss_dssp             TTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHH--HHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhc--cccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            9986  67789999998730000112222211100  0123344555555556663322345777888899999999999


Q ss_pred             HHC-CCEEecCCCCCeeEEEEecC----CCCCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHH
Q 010008          382 VEL-GYKLVSGGSDNHLVLVDLRP----MGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK  455 (520)
Q Consensus       382 ~~~-G~~v~~~gt~~~~~~vd~~~----~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~  455 (520)
                      .+. |+.++.+. ...++++.+..    .+.+..++.+.| +++||.+..+...+     .++++||++.      .+++
T Consensus       330 ~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~-----~~~~iRis~~------~~~e  397 (416)
T 1bw0_A          330 GECIGLAPTMPR-GAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFH-----APGFTRLTTT------RPVE  397 (416)
T ss_dssp             TTSTTEEECCCC-BTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGT-----CTTEEEEECC------SCHH
T ss_pred             HhCCCCcccCCC-eeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccC-----CCCeEEEEec------CCHH
Confidence            885 88776442 24556666642    124566666655 78999995432111     2578999973      3578


Q ss_pred             HHHHHHHHHHHHHHH
Q 010008          456 EFVAIADFIHEGVEI  470 (520)
Q Consensus       456 d~~~la~~i~~~l~~  470 (520)
                      ++++..+.|.++++.
T Consensus       398 ~l~~~l~~l~~~l~~  412 (416)
T 1bw0_A          398 VYREAVERIKAFCQR  412 (416)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999888764

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.92  E-value=1.9e-24  Score=222.37  Aligned_cols=320  Identities=18%  Similarity=0.141  Sum_probs=213.2

Q ss_pred             eEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHH
Q 010008           97 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY  176 (520)
Q Consensus        97 ~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l  176 (520)
                      ++..+.+++++.+++++...+...+        |+ ..+...++|    +.+++++|.+.     .+.++||++|+.+++
T Consensus         6 ~~~~~~~~~~~~v~~a~~~~~~~~~--------~~-~~~~~~~l~----~~la~~~~~~~-----~~~~~sGt~al~~al   67 (367)
T 3nyt_A            6 DLKNQQARIKDKIDAGIQRVLRHGQ--------YI-LGPEVTELE----DRLADFVGAKY-----CISCANGTDALQIVQ   67 (367)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCC--------CS-SCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHH
T ss_pred             cccccccccCHHHHHHHHHHHhcCC--------cc-CChHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHH
Confidence            3333444567889999888776432        22 234455555    67888999873     356688999999999


Q ss_pred             Hhh-CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC
Q 010008          177 TAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR  255 (520)
Q Consensus       177 ~al-l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~  255 (520)
                      .++ ++|||+|+++++.|.+...        .+...|.  +++.++++++++.+|++++++++++ ++++|+++++ ++.
T Consensus        68 ~~~~~~~gd~Vi~~~~~~~~~~~--------~~~~~G~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~-~G~  135 (367)
T 3nyt_A           68 MALGVGPGDEVITPGFTYVATAE--------TVALLGA--KPVYVDIDPRTYNLDPQLLEAAITP-RTKAIIPVSL-YGQ  135 (367)
T ss_dssp             HHTTCCTTCEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTCSBCGGGTGGGCCT-TEEEECCBCG-GGC
T ss_pred             HHhCCCCcCEEEECCCccHHHHH--------HHHHcCC--EEEEEecCCccCCcCHHHHHHhcCc-CCcEEEeeCC-ccC
Confidence            999 9999999999988765431        2334454  7778888876789999999999977 8888884322 234


Q ss_pred             CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEecc--CcccCC-CCceEEEeeCCCcchhhHHHhhc
Q 010008          256 DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTT--HKSLRG-PRGGMIFFKKDPVLGVELESAIN  332 (520)
Q Consensus       256 ~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~--hK~l~G-prgG~I~~~~~~~~~~~l~~~i~  332 (520)
                      ..|+++|.++|+++|++||+|++|..|....+.....  ..|++++|+  ||++++ +.||+++++++     ++.+++.
T Consensus       136 ~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~--~~di~~~Sf~~~K~l~~~g~gg~~~~~~~-----~l~~~~~  208 (367)
T 3nyt_A          136 CADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCN--LSTVACTSFFPSAPLGCYGDGGAIFTNDD-----ELATAIR  208 (367)
T ss_dssp             CCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTS--SSSEEEEECCTTSSSCCSSCCEEEEESCH-----HHHHHHH
T ss_pred             hhhHHHHHHHHHHcCCEEEEECccccCCeECCeeccC--CCCEEEEECCCCCcCCCcCceeEEEeCCH-----HHHHHHH
Confidence            7899999999999999999999998876644322221  239999996  899976 45899999764     5655544


Q ss_pred             ccCCC-----------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCC----CCee
Q 010008          333 NAVFP-----------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS----DNHL  397 (520)
Q Consensus       333 ~~~~p-----------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt----~~~~  397 (520)
                      .....           +.....+... +++  ++..+  ..+++..++..++++.+.+.|.+.|+.+.....    ..++
T Consensus       209 ~~~~~g~~~~~~~~~~g~~~~~~~~~-aa~--~~~~l--~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~  283 (367)
T 3nyt_A          209 QIARHGQDRRYHHIRVGVNSRLDTLQ-AAI--LLPKL--EIFEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQ  283 (367)
T ss_dssp             HHTBTTEEETTEECSCCCBCCCCHHH-HHH--HHHHH--HTHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSS
T ss_pred             HHHhcCCCcCceeeccCcCCCccHHH-HHH--HHHHH--HHHHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEE
Confidence            32221           1111112111 221  22222  234566777888889999999887765543211    1123


Q ss_pred             EEEEecCCCCCHHHHHHHHhhcCeEEcCCCC-CCCC-CCCC-------------CCEEEEccCCccccCCCHHHHHHHHH
Q 010008          398 VLVDLRPMGIDGARVEKILDMASITLNKNSV-PGDK-SALV-------------PGGIRIGSPAMTTRGFSEKEFVAIAD  462 (520)
Q Consensus       398 ~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~-Pg~~-~~~~-------------~~giRig~~~~tt~g~~~~d~~~la~  462 (520)
                      +.+.+.    +.+.+.+.|.+.||.++..+. |.+. +++.             .+.||+++..    .++++|++++++
T Consensus       284 ~~~~~~----~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~----~~t~~~i~~v~~  355 (367)
T 3nyt_A          284 YTVRMD----NRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHP----YLDTASIKIICA  355 (367)
T ss_dssp             EEEECS----SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCT----TCCHHHHHHHHH
T ss_pred             EEEEeC----CHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCC----CCCHHHHHHHHH
Confidence            333332    578889999999999876542 3221 1111             2468887653    456999999999


Q ss_pred             HHHH
Q 010008          463 FIHE  466 (520)
Q Consensus       463 ~i~~  466 (520)
                      .|++
T Consensus       356 ~~~~  359 (367)
T 3nyt_A          356 ALTN  359 (367)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            8864

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.92  E-value=1.1e-23  Score=221.05  Aligned_cols=340  Identities=17%  Similarity=0.081  Sum_probs=222.7

Q ss_pred             hccceEecCCC----CChHHHHHHHhhhhhccC--CCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC---CCCCCCceee
Q 010008           93 FKSLELIASEN----FTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFN---LDENKWGVNV  163 (520)
Q Consensus        93 ~~~i~Liasen----~~~~~V~ea~~s~l~~~y--~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg---~~~~~~~~~V  163 (520)
                      .+.|+|..+..    +.++.+.+++...+....  ..+|+.      .....++++...+++.+.+|   ++++    +|
T Consensus        43 ~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~------~~g~~~lr~~la~~l~~~~g~~~~~~~----~v  112 (425)
T 1vp4_A           43 KDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYST------TEGDPVLKQQILKLLERMYGITGLDED----NL  112 (425)
T ss_dssp             TTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCC------TTCCHHHHHHHHHHHHHHHCCCSCCGG----GE
T ss_pred             CCceeCCCCCCCcccCCHHHHHHHHHHHHhhcchhhcCCCC------CCCCHHHHHHHHHHHHhccCCCCCCcc----cE
Confidence            35678765432    257889999988775421  123332      11124566555667777779   4454    45


Q ss_pred             ecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh--
Q 010008          164 QPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL--  240 (520)
Q Consensus       164 ~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~--  240 (520)
                      .+++|+ +|+.+++.++++|||+|++.+|.|.++..        .+...|.  +++.+++++ + .+|++++++++++  
T Consensus       113 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~-~-~~d~~~l~~~l~~~~  180 (425)
T 1vp4_A          113 IFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAIN--------AFRQYLA--NFVVVPLED-D-GMDLNVLERKLSEFD  180 (425)
T ss_dssp             EEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHTTTC--EEEEEEEET-T-EECHHHHHHHHHHHH
T ss_pred             EEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH--------HHHHcCC--EEEEeccCC-C-CCCHHHHHHHHHhhh
Confidence            567776 89999999999999999999988755421        2334454  566666664 3 3999999998875  


Q ss_pred             -----cCCcEE-EEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-----cccEEEeccC
Q 010008          241 -----FRPKLI-IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCDVVTTTTH  304 (520)
Q Consensus       241 -----~~pklI-i~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-----~aDiv~~S~h  304 (520)
                           .++++| +++.++||+  ..+   +++|.++|+++|+++|+|++|.. +...+....++.     ..+++++|+|
T Consensus       181 ~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~i~~~s~s  259 (425)
T 1vp4_A          181 KNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGA-LRYEGETVDPIFKIGGPERVVLLNTFS  259 (425)
T ss_dssp             HTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTT-CBCSSCCCCCHHHHHCTTTEEEEEEST
T ss_pred             hcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCcc-ccCCCCCCcCHHHhCCCCCEEEEeccc
Confidence                 368988 467888886  444   67889999999999999999754 333222111221     2468899999


Q ss_pred             cccC-CCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHHHH
Q 010008          305 KSLR-GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-SPEFKVYQNKVVSNCRALASRLV  382 (520)
Q Consensus       305 K~l~-GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~-~~~~~~~~~~i~~na~~l~~~L~  382 (520)
                      |++. |.|.|++++++      ++.+.+.....+...++ +....+++..+|+... ....++..+++.++++.+.+.|.
T Consensus       260 K~~~~G~r~G~~~~~~------~~~~~l~~~~~~~~~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~  332 (425)
T 1vp4_A          260 KVLAPGLRIGMVAGSK------EFIRKIVQAKQSADLCS-PAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALE  332 (425)
T ss_dssp             TTTCGGGCEEEEECCH------HHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccceEEEeeCH------HHHHHHHHHhhhhcCCC-CHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9984 66789999987      66666543222211222 3334444445665431 12236667778888999999998


Q ss_pred             HC-----CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHH
Q 010008          383 EL-----GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEF  457 (520)
Q Consensus       383 ~~-----G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~  457 (520)
                      +.     |+.++.+. ...++++++.. +.+..++.+.|.+.||.+..+...+. ....++++||++...     +++|+
T Consensus       333 ~~~~~~~g~~~~~~~-~g~~~~~~~~~-~~~~~~l~~~l~~~gi~v~~g~~f~~-~~~~~~~iRis~~~~-----~~e~i  404 (425)
T 1vp4_A          333 EYFSDIPGVKWVKSE-GGLFIWLTLPE-GFDTWEMFEYAKRKKVFYVPGRVFKV-YDEPSPSMRLSFCLP-----PDEKI  404 (425)
T ss_dssp             HHSTTSTTCEECCCS-BSSEEEEECCT-TCCTTTTHHHHHHHTEECEEGGGGCT-TCCCCSEEEEECSSS-----CHHHH
T ss_pred             HhCCCCCceEEecCC-ccEEEEEEcCC-CCCHHHHHHHHHHCCCEEECchhhcC-CCCCCCeEEEEeCCC-----CHHHH
Confidence            74     78876442 34567787753 45556666777677999854321111 112357899997643     48999


Q ss_pred             HHHHHHHHHHHHH
Q 010008          458 VAIADFIHEGVEI  470 (520)
Q Consensus       458 ~~la~~i~~~l~~  470 (520)
                      +++++.|.++++.
T Consensus       405 ~~~l~~l~~~l~~  417 (425)
T 1vp4_A          405 VEGIKRLREVVLE  417 (425)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998864

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.92  E-value=2.4e-23  Score=216.43  Aligned_cols=324  Identities=14%  Similarity=0.097  Sum_probs=211.8

Q ss_pred             CCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-C
Q 010008          102 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-L  180 (520)
Q Consensus       102 en~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al-l  180 (520)
                      ...+++.+++++...+.+.|.   +.    .| +...+++    +.+++++|.+.     .+...+|++|+..++.++ +
T Consensus         7 ~p~~~~~v~~a~~~~~~~~~~---~~----~g-~~~~~l~----~~la~~~~~~~-----v~~~~ggt~al~~~~~~l~~   69 (394)
T 1o69_A            7 PPHMGGNELKYIEEVFKSNYI---AP----LG-EFVNRFE----QSVKDYSKSEN-----ALALNSATAALHLALRVAGV   69 (394)
T ss_dssp             -----CCHHHHHHHHHHHTTT---SC----TT-HHHHHHH----HHHHHHHCCSE-----EEEESCHHHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHHHcCCc---cC----CC-hHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHcCC
Confidence            345678888998888765431   10    12 2344444    67888888842     244566679999999999 9


Q ss_pred             CCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc--CCcEEEEcCCCCCCCCC
Q 010008          181 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYPRDFD  258 (520)
Q Consensus       181 ~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~--~pklIi~~~s~~p~~~d  258 (520)
                      +|||+|+++++.|.+...        .+...|.  +++.++++ +++.+|++++++++++.  ++++|+++++ .+...|
T Consensus        70 ~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~~~v~~~~~-~G~~~~  137 (394)
T 1o69_A           70 KQDDIVLASSFTFIASVA--------PICYLKA--KPVFIDCD-ETYNIDVDLLKLAIKECEKKPKALILTHL-YGNAAK  137 (394)
T ss_dssp             CTTCEEEEESSSCGGGTH--------HHHHTTC--EEEEECBC-TTSSBCHHHHHHHHHHCSSCCCEEEEECG-GGCCCC
T ss_pred             CCCCEEEECCCccHHHHH--------HHHHcCC--EEEEEEeC-CCCCcCHHHHHHHHhcccCCceEEEEECC-CCChhh
Confidence            999999999998866531        2334454  66777776 57889999999999764  6899888752 334789


Q ss_pred             HHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCceEEEeeCCCcchhhHHHhhcccCCCC
Q 010008          259 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPG  338 (520)
Q Consensus       259 ~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~  338 (520)
                      +++|.++|+++|++||+|++|..|+.+.+.....+..+|+.++|.||.++|+++|+++++++     ++.+++......+
T Consensus       138 l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~~~G~~~~~~~-----~l~~~l~~~~~~~  212 (394)
T 1o69_A          138 MDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNK-----EKIEKARFYSTQA  212 (394)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCH-----HHHHHHHHHTBTC
T ss_pred             HHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCCCCceEEEECCH-----HHHHHHHHHHHhc
Confidence            99999999999999999999887876554322223357788888899998889999999642     5555543321111


Q ss_pred             ------CC--------CCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCC---CC-eeEEE
Q 010008          339 ------LQ--------GGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS---DN-HLVLV  400 (520)
Q Consensus       339 ------~~--------g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt---~~-~~~~v  400 (520)
                            .+        +++.....++    +..+  ..+++..+++.++++++.+.|.+. +++.....   .+ +++++
T Consensus       213 ~~~~~~~~~~~~g~~~~~~~~~aa~~----l~~l--~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~i  285 (394)
T 1o69_A          213 RENCLHYEHLDYGYNYRLSNVLGAIG----VAQM--EVLEQRVLKKREIYEWYKEFLGEY-FSFLDELENSRSNRWLSTA  285 (394)
T ss_dssp             CCSSSSCCCSSCCCBCBCCHHHHHHH----HHHH--TTHHHHHHHHHHHHHHHHHHHTTT-EECCCCCTTEECCCSSEEE
T ss_pred             cccCccccccccCcccCcCHHHHHHH----HHHH--HHHHHHHHHHHHHHHHHHHHhccc-ccccCCCCCCcceeEEEEE
Confidence                  11        1222222222    2221  235667788889999999999876 55544311   12 24566


Q ss_pred             EecCC--------------------CCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCC--------------CEEEEccC
Q 010008          401 DLRPM--------------------GIDGARVEKILDMASITLNKNSVPGDK-SALVP--------------GGIRIGSP  445 (520)
Q Consensus       401 d~~~~--------------------g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~--------------~giRig~~  445 (520)
                      .+...                    +++..++.+.|.+.||.++.++.|.+. ..+..              .++|+.+.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (394)
T 1o69_A          286 LINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSG  365 (394)
T ss_dssp             EESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCC
T ss_pred             EecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCC
Confidence            66421                    235677888999999999765433111 01111              34555443


Q ss_pred             CccccCCCHHHHHHHHHHHHHHHHH
Q 010008          446 AMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       446 ~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                          ..++++|++++++.|++++..
T Consensus       366 ----~~~t~edi~~~~~~l~~~~~~  386 (394)
T 1o69_A          366 ----TAMSKDDVYEISKLILKSIKA  386 (394)
T ss_dssp             ----TTCCHHHHHHHHHHHHHHHC-
T ss_pred             ----CCCCHHHHHHHHHHHHHHHhc
Confidence                335699999999999887653

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.92  E-value=3e-23  Score=217.73  Aligned_cols=332  Identities=16%  Similarity=0.218  Sum_probs=217.9

Q ss_pred             eEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCc-chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHH
Q 010008           97 ELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  173 (520)
Q Consensus        97 ~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g-~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~  173 (520)
                      +|..+++.  .|+.+++++...+...+         |.. .+...+++    +.+++++|.+.     .+...+|++|+.
T Consensus        20 ~l~~~~p~~~~p~~~~~a~~~~~~~~~---------y~~~~~~~~~l~----~~la~~~~~~~-----v~~~~ggt~al~   81 (424)
T 2po3_A           20 PLLVGRPNRIDRARLYERLDRALDSQW---------LSNGGPLVREFE----ERVAGLAGVRH-----AVATCNATAGLQ   81 (424)
T ss_dssp             CEETTCCCCCCHHHHHHHHHHHHHHTC---------CSSSCHHHHHHH----HHHHHHHTSSE-----EEEESCHHHHHH
T ss_pred             cccccCCCCCChHHHHHHHHHHHhcCC---------cccCCHHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHH
Confidence            45556654  46789999888775421         222 24445555    67888888752     244456669999


Q ss_pred             HHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC
Q 010008          174 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  253 (520)
Q Consensus       174 ~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~  253 (520)
                      +++.++. +||+|+++++.|.++..        .+...|.  +++.++++++++.+|+++|++.+++ ++++|+++.+ .
T Consensus        82 ~~l~~l~-~gd~Vlv~~~~~~~~~~--------~~~~~G~--~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~-t  148 (424)
T 2po3_A           82 LLAHAAG-LTGEVIMPSMTFAATPH--------ALRWIGL--TPVFADIDPDTGNLDPDQVAAAVTP-RTSAVVGVHL-W  148 (424)
T ss_dssp             HHHHHHT-CCSEEEEESSSCTHHHH--------HHHHTTC--EEEEECBCTTTSSBCHHHHGGGCCT-TEEEEEEECG-G
T ss_pred             HHHHHcC-CCCEEEECCCccHHHHH--------HHHHcCC--EEEEEecCCCcCCcCHHHHHHhhCc-CCcEEEEECC-C
Confidence            9999885 89999999998765431        2334555  6777778765788999999999987 8999988642 3


Q ss_pred             CCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEEEeccC--cccCCCCceEEEeeCCCcchhhHHHh
Q 010008          254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESA  330 (520)
Q Consensus       254 p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S~h--K~l~GprgG~I~~~~~~~~~~~l~~~  330 (520)
                      +...++++|.++|+++|++||+|++|..|+...+.   ++. ..|++++|+|  |+++|+++|+++++++     ++.++
T Consensus       149 G~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~---~~~~~~di~~~S~sk~K~l~~~~~G~~v~~~~-----~l~~~  220 (424)
T 2po3_A          149 GRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGR---PAGSLGDAEVFSFHATKAVNAFEGGAVVTDDA-----DLAAR  220 (424)
T ss_dssp             GCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTE---ETTSSSSEEEEECCTTSSSCCSSCEEEEESCH-----HHHHH
T ss_pred             CCcCCHHHHHHHHHHcCCEEEEECccccCCeECCe---ecccccCEEEEeCCCCCCccCCCCeEEEeCCH-----HHHHH
Confidence            34789999999999999999999998877764332   122 4689999988  8898899999999842     55555


Q ss_pred             hcccCCCCC--------CCCC-hHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEec-C-CC-CC-e
Q 010008          331 INNAVFPGL--------QGGP-HNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVS-G-GS-DN-H  396 (520)
Q Consensus       331 i~~~~~p~~--------~g~p-~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~-~-gt-~~-~  396 (520)
                      +......+.        .|.+ .+..+++ ++++...  ..++++.++..++++++.+.|.+. |+.+.. + +. .+ +
T Consensus       221 l~~~~~~~~~~~~~~~~~g~~~~~~~~~a-a~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~  297 (424)
T 2po3_A          221 IRALHNFGFDLPGGSPAGGTNAKMSEAAA-AMGLTSL--DAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQ  297 (424)
T ss_dssp             HHHHHBTTTTCTTCCTTCCCBCCCCHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCC
T ss_pred             HHHHHhcCccccccccccCcCCCcCHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccE
Confidence            433211111        1111 1112221 1223221  245667788888888888888774 888764 2 22 12 3


Q ss_pred             eEEEEecC--CCCCHHHHHHHHhhcCeEEcCCCCCC-CC-CCCC--------------CCEEEEccCCccccCCCHHHHH
Q 010008          397 LVLVDLRP--MGIDGARVEKILDMASITLNKNSVPG-DK-SALV--------------PGGIRIGSPAMTTRGFSEKEFV  458 (520)
Q Consensus       397 ~~~vd~~~--~g~~~~~~~~~L~~~gI~v~~~~~Pg-~~-~~~~--------------~~giRig~~~~tt~g~~~~d~~  458 (520)
                      ++.+++..  .+++..++.+.|.+.||.+...+.|. +. ..+.              ...||+++...    ++++|++
T Consensus       298 ~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~----~t~e~i~  373 (424)
T 2po3_A          298 YVIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTA----IGDDDIR  373 (424)
T ss_dssp             CEEEEECHHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTT----CCHHHHH
T ss_pred             EEEEEECCccchhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCC----CCHHHHH
Confidence            44455532  14577888889999999997532211 00 0010              11277875433    5689999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 010008          459 AIADFIHEGVEITLEA  474 (520)
Q Consensus       459 ~la~~i~~~l~~~~~~  474 (520)
                      ++++.|.++++...+.
T Consensus       374 ~~~~~L~~~~~~~~~~  389 (424)
T 2po3_A          374 RVADLLRLCATRGREL  389 (424)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHH
Confidence            9999999998765444

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.91  E-value=5.3e-23  Score=210.94  Aligned_cols=309  Identities=15%  Similarity=0.108  Sum_probs=204.1

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      ..|+|..++|+  +|+.|  ++    .  ...+||..      . ..+++    +.+++++|++++    +|.+++|+ +
T Consensus        30 ~~i~l~~~~~~~~~~~~v--a~----~--~~~~Y~~~------~-~~~lr----~~la~~~~~~~~----~v~~~~G~~~   86 (356)
T 1fg7_A           30 GDVWLNANEYPTAVEFQL--TQ----Q--TLNRYPEC------Q-PKAVI----ENYAQYAGVKPE----QVLVSRGADE   86 (356)
T ss_dssp             CSEECSSCCCSSCCCCCC--CC----C--CTTSCCCS------S-CHHHH----HHHHHHHTSCGG----GEEEESHHHH
T ss_pred             ceEEeeCCCCCCCCCHhH--hh----h--hhccCCCc------c-HHHHH----HHHHHHhCCChH----HEEEcCCHHH
Confidence            45888888885  34555  21    1  11234431      1 23333    677888899875    45667886 8


Q ss_pred             HHHHHHHhhCCCC-CEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 010008          171 ANFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  249 (520)
Q Consensus       171 A~~~~l~all~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~  249 (520)
                      ++.+++.++++|| |+|++++|.|.++..        .+...|.  +++.++++ +++.+|++++++.++  ++|+|+++
T Consensus        87 ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~--~~~~v~l~  153 (356)
T 1fg7_A           87 GIELLIRAFCEPGKDAILYCPPTYGMYSV--------SAETIGV--ECRTVPTL-DNWQLDLQGISDKLD--GVKVVYVC  153 (356)
T ss_dssp             HHHHHHHHHCCTTTCEEEECSSSCTHHHH--------HHHHHTC--EEEECCCC-TTSCCCHHHHHTSCT--TEEEEEEE
T ss_pred             HHHHHHHHHhCCCCCEEEEeCCChHHHHH--------HHHHcCC--EEEEeeCC-CCCCCCHHHHHHHhc--CCCEEEEe
Confidence            9999999999999 999999998765421        2233454  66677776 457899999999886  78999999


Q ss_pred             CCCCCC--CCCHHHHHHHHHH--hCCEEEEechhhcccccccccCCCCC--cccEEEeccCccc--CCCCceEEEeeCCC
Q 010008          250 ASAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL--RGPRGGMIFFKKDP  321 (520)
Q Consensus       250 ~s~~p~--~~d~~~i~~ia~~--~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l--~GprgG~I~~~~~~  321 (520)
                      .++||+  ..+.+++.++++.  +|+++|+|++|....-....... +.  ..++++.|+||++  +|+|.|++++++  
T Consensus       154 ~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~--  230 (356)
T 1fg7_A          154 SPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGW-LAEYPHLAILRTLSKAFALAGLRCGFTLANE--  230 (356)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCSGGG-TTTCTTEEEEEESSSTTCCGGGCCEEEEECH--
T ss_pred             CCCCCCCCCCCHHHHHHHHHhCCCCCEEEEEccchhhcCCCcHHHH-HhhCCCEEEEecchHhhcCchhhhEEEEeCH--
Confidence            999986  6666555554443  89999999997533211111110 11  3568899999987  678889999977  


Q ss_pred             cchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCC--CEEecCCCCCeeEE
Q 010008          322 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG--YKLVSGGSDNHLVL  399 (520)
Q Consensus       322 ~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G--~~v~~~gt~~~~~~  399 (520)
                          ++.+.+.....+.  + ++....++...+|+......+++..+++.++++.+.+.|.+.|  +.+. +. ...+++
T Consensus       231 ----~~~~~l~~~~~~~--~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~-~~~~~~  301 (356)
T 1fg7_A          231 ----EVINLLMKVIAPY--P-LSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVF-DS-ETNYIL  301 (356)
T ss_dssp             ----HHHHHHHHHSCSS--C-SCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEEC-CC-SSSEEE
T ss_pred             ----HHHHHHHHhcCCC--C-CCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEC-CC-CCeEEE
Confidence                6777665543322  2 3333333333344331101156677888889999999998865  3333 32 345667


Q ss_pred             EEecCCCCCHHHHHHHHhhcCeEEcC-CCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          400 VDLRPMGIDGARVEKILDMASITLNK-NSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       400 vd~~~~g~~~~~~~~~L~~~gI~v~~-~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      +++.    +..++.+.|.++||.+.. +..+|     .++++||+..       +++|++++++.|++
T Consensus       302 ~~~~----~~~~l~~~L~~~gI~v~~~g~~~~-----~~~~iRis~~-------~~~e~~~~~~~l~~  353 (356)
T 1fg7_A          302 ARFK----ASSAVFKSLWDQGIILRDQNKQPS-----LSGCLRITVG-------TREESQRVIDALRA  353 (356)
T ss_dssp             EEET----THHHHHHHHHHTTEECEECTTSTT-----CTTEEEEECC-------CHHHHHHHHHHHHT
T ss_pred             EECC----CHHHHHHHHHHCCEEEEECCCCCC-----CCCeEEEEeC-------CHHHHHHHHHHHHh
Confidence            7774    567788888999999964 32221     2468999864       37899999888764

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.91  E-value=2.7e-23  Score=219.11  Aligned_cols=345  Identities=12%  Similarity=0.008  Sum_probs=213.5

Q ss_pred             hccc-eEecCCCCChHHHHH----HHhhhhhc-------c----CCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--
Q 010008           93 FKSL-ELIASENFTSRAVME----AVGSCLTN-------K----YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--  154 (520)
Q Consensus        93 ~~~i-~Liasen~~~~~V~e----a~~s~l~~-------~----y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--  154 (520)
                      .+.| +|..+.+..++.+.+    ++...+.+       .    +..+|+.      .....++++...+++.+.+|+  
T Consensus        31 ~~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~------~~g~~~lr~~ia~~l~~~~g~~~  104 (444)
T 3if2_A           31 DQPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSN------PQGDSAFIDALVGFFNRHYDWNL  104 (444)
T ss_dssp             SSCCEECSCCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCC------TTCCHHHHHHHHHHHHHHHCCCC
T ss_pred             chhhhccCCCCCCcccchHHHHHHHHHHHHhccccccccchhhhhhhccCC------CCCCHHHHHHHHHHHHhhcCCCC
Confidence            4668 887766555555444    44444433       1    0113332      222346666666777777765  


Q ss_pred             CCCCCceeeecCChH-HHHHHHHHhhCCCCC--------------EEEEc-CCCCCccccccccccccccccccceEEEE
Q 010008          155 DENKWGVNVQPLSGS-PANFEVYTAILKPHD--------------RIMGL-DLPHGGHLSHGFMTPKRRVSGTSIYFESM  218 (520)
Q Consensus       155 ~~~~~~~~V~~~sGs-~A~~~~l~all~pGD--------------~Vl~~-~~~~~ghls~g~~~~~~~v~~~g~~~~~v  218 (520)
                      +++    +|.+++|+ +|+.+++.++++|||              +|+++ +|.|.++.......  .  .+.+....++
T Consensus       105 ~~~----~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~--~--~~~~~~~~~~  176 (444)
T 3if2_A          105 TSE----NIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEG--Q--HFAAVLPHID  176 (444)
T ss_dssp             CGG----GEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSS--C--CEEECCCEEE
T ss_pred             CHH----HEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhccccc--c--hhhccCceEE
Confidence            444    44456665 999999999999998              88876 77776653211000  0  1222334666


Q ss_pred             EcccCCCC----CCCCHHHHHHH---hhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccc--
Q 010008          219 PYRLDEST----GLVDYDMLEKT---AILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLV--  284 (520)
Q Consensus       219 ~~~~d~~~----~~iD~d~le~~---i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli--  284 (520)
                      ++++++++    +.+|+++|+++   +++ ++++|+++.++||+  ..+   +++|.++|+++|++||+|++|.....  
T Consensus       177 ~~~~~~~~g~~~~~~d~~~l~~~l~~~~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~  255 (444)
T 3if2_A          177 EVTHDGEEGFFKYRVDFEALENLPALKEG-RIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNI  255 (444)
T ss_dssp             EEEETTEEEEEEEECCHHHHHTCHHHHTT-CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCC
T ss_pred             ecccccccCccccCCCHHHHHHHHHhcCC-CceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCccccc
Confidence            66666422    37999999987   555 78999998888886  667   88889999999999999999753211  


Q ss_pred             -cccccCCCCCcccEEEeccCccc-CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCch
Q 010008          285 -AASVVADPFKYCDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPE  362 (520)
Q Consensus       285 -~~~~~~~p~~~aDiv~~S~hK~l-~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~  362 (520)
                       ..+..+ .....+++++|+||++ +|.|.|+++.++      ++.+.+.........+++...+. +.+..++.   ..
T Consensus       256 ~~~~~~~-~~~~~~i~~~S~sK~~~~G~r~G~~~~~~------~l~~~~~~~~~~~~~~~~~~~~~-a~~~~l~~---~~  324 (444)
T 3if2_A          256 IYSDAHL-NWDNNTILCFSLSKIGLPGMRTGIIVADA------KVIEAVSAMNAVVNLAPTRFGAA-IATPLVAN---DR  324 (444)
T ss_dssp             BCSCCCC-CCCTTEEEEEESTTTTCGGGCCEEEECCH------HHHHHHHHHHHHHHSSCCCHHHH-HHHHHHHT---SH
T ss_pred             ccccccc-cCCCCEEEEechhhccCCCCceEEEEECH------HHHHHHHHHHHhccCCCChHHHH-HHHHHHHc---Cc
Confidence             111111 1124678999999974 577889999877      66665543221111222222222 22223332   22


Q ss_pred             h----HH-HHHHHHHHHHHHHHHHHHC----CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCC--CC
Q 010008          363 F----KV-YQNKVVSNCRALASRLVEL----GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVP--GD  431 (520)
Q Consensus       363 ~----~~-~~~~i~~na~~l~~~L~~~----G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~P--g~  431 (520)
                      +    .+ ..+.+.++++.+.+.|.+.    ++.+..+. ...++|+++...+++..++.+.|.+.||.+..+...  +.
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~  403 (444)
T 3if2_A          325 IKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPE-GAIFLWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGV  403 (444)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCC-BSSEEEEEETTCSSCHHHHHHHHHHTTEECEEGGGSCTTC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCC-ccEEEEEEcCCCCCCHHHHHHHHHHCCeEEecchhhcCCC
Confidence            2    12 3455666777777777652    55655432 345677788654678888888999999999654321  11


Q ss_pred             CC---CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          432 KS---ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       432 ~~---~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      ..   +...++|||+++.      +++++++.++.|.++++.
T Consensus       404 ~~~~~~~~~~~iRis~~~------~~e~i~~~l~~l~~~~~~  439 (444)
T 3if2_A          404 DVSDYQHAHECIRMSIAA------DEQTLIDGIKVIGEVVRE  439 (444)
T ss_dssp             CCTTCSGGGSEEEEESSS------CHHHHHHHHHHHHHHHHH
T ss_pred             CCcccccCCCeEEEEEeC------CHHHHHHHHHHHHHHHHH
Confidence            10   1123689999763      489999999999988864

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.91  E-value=1.2e-22  Score=207.65  Aligned_cols=316  Identities=15%  Similarity=0.127  Sum_probs=215.2

Q ss_pred             hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh-H
Q 010008           93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-S  169 (520)
Q Consensus        93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG-s  169 (520)
                      ++.|+|..++|+  +++.|.+++...+.+.  .+||..       ...+++    +++++++|++++    +|.+++| +
T Consensus        26 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~~-------~~~~l~----~~la~~~~~~~~----~i~~~~g~t   88 (361)
T 3ftb_A           26 RELLDYSSNINPLGIPKSFLNNIDEGIKNL--GVYPDV-------NYRRLN----KSIENYLKLKDI----GIVLGNGAS   88 (361)
T ss_dssp             --CEETTCCCCTTCSCHHHHTTHHHHHHGG--GSCCCT-------TCHHHH----HHHHHHHTCCSC----EEEEESSHH
T ss_pred             CCEEEecCCCCCCCCCHHHHHHHHHHHHHh--cCCCCc-------cHHHHH----HHHHHHhCCCcc----eEEEcCCHH
Confidence            356888888775  5799999998877652  244431       123444    678888998875    3444555 4


Q ss_pred             HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 010008          170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  249 (520)
Q Consensus       170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~  249 (520)
                      +|+.+++.++    |+|++.++.|.++..        .+...|.  +++.+++++ ++.+|++++++++++  +++|+++
T Consensus        89 ~al~~~~~~~----d~vi~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~-~~~~~~~~l~~~l~~--~~~v~i~  151 (361)
T 3ftb_A           89 EIIELSISLF----EKILIIVPSYAEYEI--------NAKKHGV--SVVFSYLDE-NMCIDYEDIISKIDD--VDSVIIG  151 (361)
T ss_dssp             HHHHHHHTTC----SEEEEEESCCTHHHH--------HHHHTTC--EEEEEECCT-TSCCCHHHHHHHTTT--CSEEEEE
T ss_pred             HHHHHHHHHc----CcEEEecCChHHHHH--------HHHHcCC--eEEEeecCc-ccCCCHHHHHHhccC--CCEEEEe
Confidence            8999888887    999999987765321        2333454  666777763 457888999999976  9999999


Q ss_pred             CCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-----cccEEEeccCccc--CCCCceEEE-
Q 010008          250 ASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCDVVTTTTHKSL--RGPRGGMIF-  316 (520)
Q Consensus       250 ~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-----~aDiv~~S~hK~l--~GprgG~I~-  316 (520)
                      .++||+  ..+   +++|+++|+++|+++++|++|.. +... ....++.     ...++++|+||++  +|.|.|+++ 
T Consensus       152 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~  229 (361)
T 3ftb_A          152 NPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIE-FTGD-PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGIT  229 (361)
T ss_dssp             TTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGG-GTCC-TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEE
T ss_pred             CCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchh-hcCC-cccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEe
Confidence            888886  444   67788888899999999999753 3322 1111111     2347789999987  567889988 


Q ss_pred             eeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCE-EecCCCC
Q 010008          317 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYK-LVSGGSD  394 (520)
Q Consensus       317 ~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~-v~~~gt~  394 (520)
                      .++      ++.+.+.....+   .+++....+++..+++.  ....++..+++.++++.+.+.|.+. |+. +..+  .
T Consensus       230 ~~~------~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~  296 (361)
T 3ftb_A          230 NNK------EIAAKIKAKQNP---WNINCFAEMAAINCLKD--TNYIEESLLWIKKERKRFIEELNKIGFIKRVFSP--H  296 (361)
T ss_dssp             SCH------HHHHHHHTTSCT---TCSCHHHHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECC--S
T ss_pred             CCH------HHHHHHHhhCCC---CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCC--C
Confidence            554      677776654332   23444455554444542  1234677788889999999999885 777 5543  2


Q ss_pred             CeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          395 NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       395 ~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ..++++++..  .+..++.+.|.+.||.+..+...   +...++++||+..       +++|++++.+.|+++.+
T Consensus       297 ~~~~~~~~~~--~~~~~l~~~l~~~gi~v~~g~~~---~~~~~~~iRis~~-------~~~~~~~l~~~l~~~~~  359 (361)
T 3ftb_A          297 ANFVLCRLEN--ISGEKLYDSLLKEDIVIRRCCNF---IGLDDSFVRFAIK-------DEKKNTKFLRALKGVEN  359 (361)
T ss_dssp             SSEEEEEESS--SCHHHHHHHHHTTTEECEECTTS---TTCCTTEEEEECC-------CHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEcCC--CCHHHHHHHHHHCCeEEeeCccC---CCCCCCEEEEEcC-------CHHHHHHHHHHHHHHHh
Confidence            3456777753  56788888888889998543211   2234678999864       46889999998887654

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.91  E-value=4.9e-24  Score=217.98  Aligned_cols=330  Identities=12%  Similarity=0.056  Sum_probs=207.7

Q ss_pred             hhccceEecCCCCC--hHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH
Q 010008           92 QFKSLELIASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS  169 (520)
Q Consensus        92 ~~~~i~Liasen~~--~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs  169 (520)
                      +...+.+..++|+.  +|.|++++...+...         .|+..+..++++    +++++++|.+.     .+.+++|+
T Consensus        12 ~~~~~~~~~~~~~~g~~p~v~~ai~~~~~~~---------~~~~~~~~~~l~----~~la~~~~~~~-----~i~~~~g~   73 (359)
T 3pj0_A           12 KTPYKLGGNGPRNVGVLTEALQNIDDNLESD---------IYGNGAVIEDFE----TKIAKILGKQS-----AVFFPSGT   73 (359)
T ss_dssp             TCSEESSSSSCCBHHHHHHHTTTSCTTCBCC---------BTTBSHHHHHHH----HHHHHHHTCSE-----EEEESCHH
T ss_pred             hcchhhcCCCccccCCCHHHHHHHHhhcccC---------cccCCHHHHHHH----HHHHHHhCCCc-----EEEeCCHH
Confidence            34567777889986  899999987643211         133334455555    67889999875     24558999


Q ss_pred             HHHHHHHHhhCCCCCE--EEEcCCCCCcccccccccccccc-ccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEE
Q 010008          170 PANFEVYTAILKPHDR--IMGLDLPHGGHLSHGFMTPKRRV-SGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       170 ~A~~~~l~all~pGD~--Vl~~~~~~~ghls~g~~~~~~~v-~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklI  246 (520)
                      +|+..++.+++++||+  |++.++.|.......      .+ ...|.  +++.++.  +++.+|+++++++ .+ ++++|
T Consensus        74 ~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~------~~~~~~g~--~~~~v~~--~~~~~d~~~l~~~-~~-~~~~v  141 (359)
T 3pj0_A           74 MAQQIALRIWADRKENRRVAYHPLSHLEIHEQD------GLKELQQI--TPLLLGT--ANQLLTIDDIKSL-RE-PVSSV  141 (359)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTT------HHHHHHCC--EEEECSC--TTSCCCHHHHHTC-SS-CCSEE
T ss_pred             HHHHHHHHHHHhcCCCcEEEEeccceeeehhcc------hHHHhcCc--eEEecCC--cCCCcCHHHHHhc-cC-CceEE
Confidence            9999999999999997  444433322111000      11 22344  6666655  4678999999988 54 89999


Q ss_pred             EEcCCCCCC---CCCHHH---HHHHHHHhCCEEEEechhhcccc-cccccCCCC-CcccEEEeccCcccCCCCceEEEee
Q 010008          247 IAGASAYPR---DFDYPR---MRQIADAVGALLMMDMAHISGLV-AASVVADPF-KYCDVVTTTTHKSLRGPRGGMIFFK  318 (520)
Q Consensus       247 i~~~s~~p~---~~d~~~---i~~ia~~~g~~li~D~Ah~~gli-~~~~~~~p~-~~aDiv~~S~hK~l~GprgG~I~~~  318 (520)
                      +++.++||+   ..+.++   |+++|+++|++||+|++|..+.. ..+....++ .++|+++.|+||++.||.||+++.+
T Consensus       142 ~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~~~  221 (359)
T 3pj0_A          142 LIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIAGAILAGN  221 (359)
T ss_dssp             EEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCSSCEEEEEC
T ss_pred             EEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCcceEEEECC
Confidence            998776542   556554   59999999999999998765432 111111111 2579999999999988877888887


Q ss_pred             CCCcchhhHHHhhccc--CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCC
Q 010008          319 KDPVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDN  395 (520)
Q Consensus       319 ~~~~~~~~l~~~i~~~--~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~  395 (520)
                      +      ++.+++...  .+.+.....+....+++ .+++...     +..++..++++.+.+.|.+. |+++.......
T Consensus       222 ~------~l~~~~~~~~~~~~~~~~~~~~~~~a~~-~~l~~~~-----~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~  289 (359)
T 3pj0_A          222 D------DFVQEAKIWKRRYGGDLISLYPYILSAD-YYFEKRI-----GKMAEYFEAAKGLAERFNSCSGVKTVPEVPVS  289 (359)
T ss_dssp             H------HHHHHHHHHHHHTTCCCSCCHHHHHHHH-HHHHHHG-----GGHHHHHHHHHHHHHHHHTSTTEEEESSSCSS
T ss_pred             H------HHHHHHHHHHHHhCCCcchhHHHHHHHH-HHHHHHH-----HHhHHHHHHHHHHHHHHhhCCCceeeccCCcc
Confidence            7      676666431  12211112222233333 3454432     33456678889999999885 88885322345


Q ss_pred             eeEEEEecCCC-CCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          396 HLVLVDLRPMG-IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       396 ~~~~vd~~~~g-~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      +++++++...+ .+..++.+.|.++||.+..+..++.   ...+.+|+....-. ...+.+++++..+.|.++
T Consensus       290 ~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~---~~~~~~r~~i~~~~-~~~~~e~l~~~l~~l~~~  358 (359)
T 3pj0_A          290 NMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKS---ADVCAFEVSVGDAF-AEIPAKNLELVFRCLEKE  358 (359)
T ss_dssp             SEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEE---TTEEEEEEECCTTG-GGSCHHHHHHHHHHHHHH
T ss_pred             eEEEEEecCccchhHHHHHHHHHhcCcEecCCccccC---CCceEEEEEecCcc-ccCCHHHHHHHHHHHHhc
Confidence            66777775321 2346788889999999965432221   12457888543111 124577888777777654

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.91  E-value=2.1e-23  Score=219.09  Aligned_cols=337  Identities=14%  Similarity=0.094  Sum_probs=219.4

Q ss_pred             hccceEecCCC-C--ChHHH--HHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHc-CCCCCCCceeeecC
Q 010008           93 FKSLELIASEN-F--TSRAV--MEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF-NLDENKWGVNVQPL  166 (520)
Q Consensus        93 ~~~i~Liasen-~--~~~~V--~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lf-g~~~~~~~~~V~~~  166 (520)
                      .+.|+|..+++ .  .++.+  ++++...+......+|+..   .|   ..++++...+++.+.+ +++++++ ..|.++
T Consensus        47 ~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~---~g---~~~lr~~ia~~~~~~~~~~~~~~~-~~i~~t  119 (430)
T 2x5f_A           47 STTYNATIGMATNKDGKMFASSLDAMFNDLTPDEIFPYAPP---QG---IEELRDLWQQKMLRDNPELSIDNM-SRPIVT  119 (430)
T ss_dssp             TCSEECCCSSCEETTEECCCHHHHTTBSSCCGGGTSSCCCT---TC---CHHHHHHHHHHHHHHCTTCCGGGB-CCCEEE
T ss_pred             CCcEEeeeeeccCCCCchhhHHHHHHHHhcCcccccccCCC---CC---CHHHHHHHHHHHhccCcccCCCcc-ceEEEc
Confidence            45688887776 3  35656  7777665543112234321   11   2345543334444332 6666531 014556


Q ss_pred             ChH-HHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccc-ccceEEEEEcccCCCCCCCCHHHHHHHhhhc--C
Q 010008          167 SGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSG-TSIYFESMPYRLDESTGLVDYDMLEKTAILF--R  242 (520)
Q Consensus       167 sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~-~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~--~  242 (520)
                      +|+ +|+..++.++++|||+|++.+|.|.++..        .+.. .|.  +++.++++++++.+|++++++++++.  +
T Consensus       120 ~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~--------~~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~l~~~~~~  189 (430)
T 2x5f_A          120 NALTHGLSLVGDLFVNQDDTILLPEHNWGNYKL--------VFNTRNGA--NLQTYPIFDKDGHYTTDSLVEALQSYNKD  189 (430)
T ss_dssp             SHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHH--------HHTTTTCC--EEEEECCBCTTSCBCSHHHHHHHHHCCSS
T ss_pred             CCchHHHHHHHHHHhCCCCEEEEcCCcCccHHH--------HHHHhcCC--eEEEEeccCccCCcCHHHHHHHHHhcCCC
Confidence            665 99999999999999999999998866431        2233 454  66677776434679999999998763  6


Q ss_pred             CcEEEEcCCCCCC--CCC---HHHHHHHHHH-----hCCEEEEechhhcccccccc-cCC---CC---Ccc---cEEEec
Q 010008          243 PKLIIAGASAYPR--DFD---YPRMRQIADA-----VGALLMMDMAHISGLVAASV-VAD---PF---KYC---DVVTTT  302 (520)
Q Consensus       243 pklIi~~~s~~p~--~~d---~~~i~~ia~~-----~g~~li~D~Ah~~gli~~~~-~~~---p~---~~a---Div~~S  302 (520)
                      +++|+++.|+||+  ..+   +++|.++|++     +|+++|+|++|.. +...+. ...   .+   ...   +++++|
T Consensus       190 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s  268 (430)
T 2x5f_A          190 KVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYG-LFYEDVYTQSLFTALTNLHSNAILPIRLDG  268 (430)
T ss_dssp             EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTT-CBCSSSCCSCHHHHHHTTCCTTEEEEEEEE
T ss_pred             CEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhccc-ccCCcccchHHHHHHhhccCCcceEEEEEe
Confidence            7888888889886  566   8899999999     9999999999653 333322 111   11   123   577899


Q ss_pred             cCccc--CCCCceEEEe---eCCCcchhhHHHhhcccCCC---CCCCCChHHHHHHHHHHHH-Hhc-CchhHHHHHHHHH
Q 010008          303 THKSL--RGPRGGMIFF---KKDPVLGVELESAINNAVFP---GLQGGPHNHTIGGLAVCLK-HAQ-SPEFKVYQNKVVS  372 (520)
Q Consensus       303 ~hK~l--~GprgG~I~~---~~~~~~~~~l~~~i~~~~~p---~~~g~p~~~~iaala~al~-~~~-~~~~~~~~~~i~~  372 (520)
                      +||++  +|.|.|++++   ++      ++.+.+......   ....+++....+++..+|+ ... ....+...+++.+
T Consensus       269 ~sK~~~~~G~riG~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  342 (430)
T 2x5f_A          269 ATKEFFAWGFRVGFMTFGTSDQ------TTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKE  342 (430)
T ss_dssp             HHHHTTCGGGCCEEEEEBCCCH------HHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCCCeEEEEEecCCH------HHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence            99987  5778899999   66      566655432211   0122334444444445565 310 0112336778888


Q ss_pred             HHHHHHHHHH----HCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhh-cCeEEcCCCCCCCCCCCCCCEEEEccCCc
Q 010008          373 NCRALASRLV----ELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPAM  447 (520)
Q Consensus       373 na~~l~~~L~----~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~-~gI~v~~~~~Pg~~~~~~~~giRig~~~~  447 (520)
                      +++.+.+.|.    +.|+.+..+ ..+.++++++.  +.+..++.+.|.+ +||.+.    ||     .++++||++.. 
T Consensus       343 ~~~~l~~~L~~~~~~~g~~~~~~-~~g~~~~~~~~--~~~~~~~~~~l~~~~gi~v~----~g-----~~~~iRis~~~-  409 (430)
T 2x5f_A          343 RYEVTKEVVYADQYHSHWQAYDF-NSGYFMAIKVH--DVDPEALRKHLIDKYSIGVI----AL-----NATDIRIAFSC-  409 (430)
T ss_dssp             HHHHHHHHHTCGGGTTTEEECCC-CBSSEEEEEES--SSCHHHHHHHHHHHHCEECE----EC-----SSSEEEEEGGG-
T ss_pred             HHHHHHHHHHhhCCCCCceeeCC-CceEEEEeCCC--CCCHHHHHHHHHHhCCEEEe----cC-----CCCeEEEEEec-
Confidence            8999999998    567777654 23455777875  5677777777776 999984    44     35689999763 


Q ss_pred             cccCCCHHHHHHHHHHHHHHHHH
Q 010008          448 TTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       448 tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                          .++++++++++.|.++++.
T Consensus       410 ----~~~e~i~~~~~~l~~~l~~  428 (430)
T 2x5f_A          410 ----VEKDDIPHVFDSIAKAIDD  428 (430)
T ss_dssp             ----SCGGGHHHHHHHHHHHHHH
T ss_pred             ----CCHHHHHHHHHHHHHHHHh
Confidence                2478999999999888753

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.91  E-value=3.1e-23  Score=211.22  Aligned_cols=323  Identities=13%  Similarity=0.108  Sum_probs=207.7

Q ss_pred             cceEecCC-CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHH
Q 010008           95 SLELIASE-NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  173 (520)
Q Consensus        95 ~i~Liase-n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~  173 (520)
                      .|+|..+. ...++.|++++...+.. |..+      |+..+..+    ..++++++++| ...+   .+.+++|++|+.
T Consensus         9 ~id~~~~~~~~~~~~v~~a~~~~~~~-~~~~------~~~~~~~~----~l~~~la~~~g-~~~~---v~~~~~gt~a~~   73 (356)
T 1v72_A            9 ALGFSSDNIAGASPEVAQALVKHSSG-QAGP------YGTDELTA----QVKRKFCEIFE-RDVE---VFLVPTGTAANA   73 (356)
T ss_dssp             CCBCSCGGGCCCCHHHHHHHHHTTSS-CCCS------TTCSHHHH----HHHHHHHHHHT-SCCE---EEEESCHHHHHH
T ss_pred             eEeeccCCccCCCHHHHHHHHhhccC-cccc------cccchHHH----HHHHHHHHHhC-CCCc---EEEeCCccHHHH
Confidence            45555432 24689999999876532 2222      33233333    34478899999 3211   244577789999


Q ss_pred             HHHHhhCCCCCEEEEcCCCCCccccccccccccccccc--cceEEEEEcccCCCCCCCCHHHHHH-Hhhhc------CCc
Q 010008          174 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT--SIYFESMPYRLDESTGLVDYDMLEK-TAILF------RPK  244 (520)
Q Consensus       174 ~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~--g~~~~~v~~~~d~~~~~iD~d~le~-~i~~~------~pk  244 (520)
                      +++.++++|||+|++.++.|++.+..+      .+...  |.  +++.++.+  ++.+|+++|++ ++++.      +++
T Consensus        74 ~al~~~~~~gd~vi~~~~~~~~~~~~~------~~~~~~~g~--~~~~v~~~--~~~~d~~~l~~~~i~~~~~~~~~~~~  143 (356)
T 1v72_A           74 LCLSAMTPPWGNIYCHPASHINNDECG------APEFFSNGA--KLMTVDGP--AAKLDIVRLRERTREKVGDVHTTQPA  143 (356)
T ss_dssp             HHHHTSCCTTEEEEECTTSHHHHSSTT------HHHHHTTSC--EEEECCCG--GGCCCHHHHHHHTTSSTTCTTSCEEE
T ss_pred             HHHHHhcCCCCEEEEcCccchhhhhch------HHHHHhCCc--EEEEecCC--CCeEcHHHHHHHhhhcchhhccCCce
Confidence            999999999999999988665432210      02233  54  66666654  47899999999 88752      578


Q ss_pred             EEEEcCCCCCC-C---CCHHHHHHHHHHhCCEEEEechhhcccc-cccccCCCC---CcccEEEeccCcccCCCCc-eEE
Q 010008          245 LIIAGASAYPR-D---FDYPRMRQIADAVGALLMMDMAHISGLV-AASVVADPF---KYCDVVTTTTHKSLRGPRG-GMI  315 (520)
Q Consensus       245 lIi~~~s~~p~-~---~d~~~i~~ia~~~g~~li~D~Ah~~gli-~~~~~~~p~---~~aDiv~~S~hK~l~Gprg-G~I  315 (520)
                      +|+++++++.+ .   .++++|+++|+++|++||+|++|..+.. ..+..+..+   .++|++++|+||+ .+|.| |++
T Consensus       144 ~v~~~~~~~tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~~  222 (356)
T 1v72_A          144 CVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAAEAIV  222 (356)
T ss_dssp             EEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSCEEEE
T ss_pred             EEEEEcCCCCCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCccEEE
Confidence            99888766543 3   3578999999999999999999764322 222222222   2678999999999 55666 688


Q ss_pred             EeeCCCcchhhHHHhhcccC-CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecCCC
Q 010008          316 FFKKDPVLGVELESAINNAV-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGS  393 (520)
Q Consensus       316 ~~~~~~~~~~~l~~~i~~~~-~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~gt  393 (520)
                      ++++      ++.+++.... ..+....+.  ..++ ..+++.+....+.+..+++.++++++.+.|.+ .|+++..+ .
T Consensus       223 ~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~  292 (356)
T 1v72_A          223 LFNT------SLATEMSYRRKRAGHLSSKM--RFLS-AQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGG-T  292 (356)
T ss_dssp             ESSG------GGHHHHHHHHHHTTCCCSST--HHHH-HHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESC-C
T ss_pred             EECH------HHHhhHHHHhhccCchhhhH--HHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccC-C
Confidence            8876      4544443211 111111111  1222 22344444334566778888899999999988 58887654 2


Q ss_pred             CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          394 DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       394 ~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      ..+++++++.      .++.+.|.+.||.+..+    .   +.++.+|++++..    .+++|++++++.|+++++.
T Consensus       293 ~~~~~~~~~~------~~~~~~l~~~gi~v~~g----~---~~~~~iRi~~~~~----~~~~~i~~~~~~l~~~l~~  352 (356)
T 1v72_A          293 EANILFCRLD------SAMIDALLKAGFGFYHD----R---WGPNVVRFVTSFA----TTAEDVDHLLNQVRLAADR  352 (356)
T ss_dssp             CSSEEEEEEC------HHHHHHHHHTTCBCBCS----S---SSTTEEEEECCTT----CCHHHHHHHHHHHHHTC--
T ss_pred             CccEEEEEcC------HHHHHHHHhcCeEEecc----c---cCCCeEEEEecCC----CCHHHHHHHHHHHHHHHHh
Confidence            3456677663      35677788889998532    2   1257899986543    3589999999999887653

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.91  E-value=5.2e-23  Score=221.57  Aligned_cols=312  Identities=13%  Similarity=0.074  Sum_probs=205.8

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC--------------CCCEEEEcCCCCCcccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--------------PHDRIMGLDLPHGGHLS  198 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~--------------pGD~Vl~~~~~~~ghls  198 (520)
                      ..+...++|+.+.+|+++++|.+.+.- ..+.+.+|++||..++.++.+              |++.|++++..|.+.. 
T Consensus       129 ~~p~~~~le~~~~~~l~~~~g~~~~~~-~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~-  206 (511)
T 3vp6_A          129 IAPVFVLMEQITLKKMREIVGWSSKDG-DGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIK-  206 (511)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCSSSC-EEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHH-
T ss_pred             cCchHHHHHHHHHHHHHHHhCCCCCCC-ceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHH-
Confidence            346678999999999999999984211 234456777999988877654              6788998887664331 


Q ss_pred             ccccccccccccccceE-EEEEcccCCCCCCCCHHHHHHHhhhcC-----CcEEEEcCCCCCC--CCCHHHHHHHHHHhC
Q 010008          199 HGFMTPKRRVSGTSIYF-ESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIAGASAYPR--DFDYPRMRQIADAVG  270 (520)
Q Consensus       199 ~g~~~~~~~v~~~g~~~-~~v~~~~d~~~~~iD~d~le~~i~~~~-----pklIi~~~s~~p~--~~d~~~i~~ia~~~g  270 (520)
                             +.+...|... +++.++++ +++.+|+++|++++++.+     |++|+++.+++++  ..|+++|+++|+++|
T Consensus       207 -------~~~~~~g~g~~~~~~v~~d-~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~  278 (511)
T 3vp6_A          207 -------KAGAALGFGTDNVILIKCN-ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYN  278 (511)
T ss_dssp             -------HHHHHTTSCGGGEEEECBC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHT
T ss_pred             -------HHHHHcCCCCCcEEEeecC-CCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcC
Confidence                   2334445422 45555666 468999999999997632     8888888766654  789999999999999


Q ss_pred             CEEEEechhhcccccccccCCC---CCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhcccCCC---------
Q 010008          271 ALLMMDMAHISGLVAASVVADP---FKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFP---------  337 (520)
Q Consensus       271 ~~li~D~Ah~~gli~~~~~~~p---~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~~~~~p---------  337 (520)
                      +++++|+||..|......+...   +.++|++++++||||.+|.+ |+++++++     ++.+.......+         
T Consensus       279 ~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~-----~~~~~~~~~~~~yl~~~~~~~  353 (511)
T 3vp6_A          279 LWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEK-----GILQGCNQMHASYLFQQDKHY  353 (511)
T ss_dssp             CEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESST-----THHHHHHCCCCTTTCCSSCSS
T ss_pred             CEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCH-----HHHHHHhccCCccccCccccc
Confidence            9999999988776644322211   23689999999999988876 88888774     333322110000         


Q ss_pred             ---------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecC-CCCCeeEEEEecCCC
Q 010008          338 ---------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSG-GSDNHLVLVDLRPMG  406 (520)
Q Consensus       338 ---------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~-gt~~~~~~vd~~~~g  406 (520)
                               ..+++... ...++..+++.....++++..++..++++++.+.|++ .|++++.+ .....++.+.+.+.+
T Consensus       354 ~~~~~~~~~~~~~~r~~-~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~  432 (511)
T 3vp6_A          354 DVSYDTGDKAIQCGRHV-DIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQS  432 (511)
T ss_dssp             CGGGCCGGGSSCSSCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGG
T ss_pred             ccccCccCCCCCCCCch-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCcc
Confidence                     11112111 2334455666555567788999999999999999988 49998862 112334444444433


Q ss_pred             CC---------------HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEcc-CCccccCCCHHHHHHHHHHHHHHH
Q 010008          407 ID---------------GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS-PAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       407 ~~---------------~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~-~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      ++               ..++.+.|.+.|+.+-. ..|..   ...+.+|+++ ...    .+++|++++++.|.++-
T Consensus       433 ~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~-~~~~~---~~~~~lRi~~~~~~----~t~~di~~ll~~i~~~~  502 (511)
T 3vp6_A          433 LRGVPDSPQRREKLHKVAPKIKALMMESGTTMVG-YQPQG---DKANFFRMVISNPA----ATQSDIDFLIEEIERLG  502 (511)
T ss_dssp             GSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEE-EEEET---TEEEEEEECCCCTT----CCHHHHHHHHHHHHHHH
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHhcCCEEEE-EEEeC---CceEEEEEEecCCC----CCHHHHHHHHHHHHHHH
Confidence            21               12467777777754321 11211   1124699987 333    34899999998887653

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.91  E-value=4.3e-23  Score=212.39  Aligned_cols=287  Identities=14%  Similarity=0.136  Sum_probs=194.3

Q ss_pred             HHHHHHc-CCCCCCCceeeecCCh-HHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccC
Q 010008          146 KRALAAF-NLDENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD  223 (520)
Q Consensus       146 ~~~~~lf-g~~~~~~~~~V~~~sG-s~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d  223 (520)
                      +.+++++ +++++    +|.+++| ++|+.+++.++++|||+|++.+|.|.++..        .+...|.  +++.++++
T Consensus        70 ~~la~~~~~~~~~----~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~--------~~~~~g~--~~~~v~~~  135 (375)
T 3op7_A           70 KSVSQLYTGVKPE----QILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYD--------IPKSLGA--EVDLWQIE  135 (375)
T ss_dssp             HHHHTTSSSCCGG----GEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHH--------HHHHTTC--EEEEEEEE
T ss_pred             HHHHHHhccCChh----hEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHH--------HHHHcCC--EEEEEecc
Confidence            5566666 46665    3444555 599999999999999999999998765431        2334455  55566665


Q ss_pred             C-CCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--c
Q 010008          224 E-STGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--Y  295 (520)
Q Consensus       224 ~-~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~  295 (520)
                      + +++.+|++++++++++ ++++|+++.++||+  ..|   +++|.++|+++|+++|+|++|.. +...+ .+....  .
T Consensus       136 ~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~-~~~~~-~~~~~~~~~  212 (375)
T 3op7_A          136 EENGWLPDLEKLRQLIRP-TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRS-FSELD-VPSIIEVYD  212 (375)
T ss_dssp             GGGTTEECHHHHHHHCCT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCC-CSSSC-CCCHHHHCT
T ss_pred             ccCCCCCCHHHHHHhhcc-CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccc-ccccC-CCchhhhcC
Confidence            3 3456899999999987 89999999888886  678   99999999999999999999653 33221 111111  3


Q ss_pred             ccEEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010008          296 CDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN  373 (520)
Q Consensus       296 aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~n  373 (520)
                      .++++.|+||++  +|.|+|++++++      ++.+.+.........+++..... +...+++.. ....+...+.+.++
T Consensus       213 ~~i~~~s~sK~~~~~G~r~G~v~~~~------~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~-~~~~~~~~~~~~~~  284 (375)
T 3op7_A          213 KGIAVNSLSKTYSLPGIRIGWVAANH------QVTDILRDYRDYTMICAGVFDDL-VAQLALAHY-QEILERNRHILEEN  284 (375)
T ss_dssp             TEEEEEESSSSSSCGGGCCEEEECCH------HHHHHHTTTGGGTTSCCCHHHHH-HHHHHHHTH-HHHHHHHHHHHHHH
T ss_pred             CEEEEeEChhhcCCcccceEEEEeCH------HHHHHHHHHHhhhccCCCcHHHH-HHHHHHhcc-HHHHHHHHHHHHHH
Confidence            458899999997  577889999976      77777765433333333333333 333355532 12335666777888


Q ss_pred             HHHHHHHHHH-CCCEEecCCCCCeeEEEEecCCCCCHHHHHHH-HhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccC
Q 010008          374 CRALASRLVE-LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKI-LDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRG  451 (520)
Q Consensus       374 a~~l~~~L~~-~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~-L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g  451 (520)
                      ++.+.+.|.+ .++.++.+. ...+.++.+. .+.+..++.+. |+++||.+..+..++     .++++||++.      
T Consensus       285 ~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~ll~~~gi~v~~g~~~~-----~~~~iRi~~~------  351 (375)
T 3op7_A          285 LAILDQWIEEEPLVSYIRPA-VVSTSFVKIA-VDMPMEDFCLQLLQEHGVLLVPGNRFE-----RDGYVRLGFA------  351 (375)
T ss_dssp             HHHHHHHHHHCTTEEECCCS-SSSCEEEEEC-CSSCHHHHHHHHHHHHCEECEEGGGGT-----CTTEEEECCC------
T ss_pred             HHHHHHHHhhCCCceEecCC-CeEEEeEEcC-CCCCHHHHHHHHHHhCCEEEeChhhhC-----CCCeEEEEec------
Confidence            9999999988 477766542 2344566664 34566665555 478999985432221     2679999854      


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q 010008          452 FSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       452 ~~~~d~~~la~~i~~~l~~  470 (520)
                      ..++++++..+.|.++++.
T Consensus       352 ~~~~~i~~~l~~l~~~l~~  370 (375)
T 3op7_A          352 CEQETLIKGLEKLSQFLRR  370 (375)
T ss_dssp             SCHHHHHHHHHHHHHHHGG
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence            2358899999998887753

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.91  E-value=1.4e-23  Score=216.61  Aligned_cols=330  Identities=12%  Similarity=0.074  Sum_probs=221.8

Q ss_pred             cCCCCChHHHHHHHhhhhhccCCCCCCC-CCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeec-C-ChHHHHHHHH
Q 010008          100 ASENFTSRAVMEAVGSCLTNKYSEGLPG-KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP-L-SGSPANFEVY  176 (520)
Q Consensus       100 asen~~~~~V~ea~~s~l~~~y~~G~p~-~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~-~-sGs~A~~~~l  176 (520)
                      ++..++|+.|+++|...+.+.+..|... .....+.++.+.+| .+++.+++++|++.++   +|.. + +||+++.+++
T Consensus        19 at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~-~ar~~la~ll~~~~~~---evif~t~~~T~a~n~a~   94 (377)
T 3e77_A           19 YFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIIN-NTENLVRELLAVPDNY---KVIFLQGGGCGQFSAVP   94 (377)
T ss_dssp             ECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHH-HHHHHHHHHHTCCTTE---EEEEESSHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHH-HHHHHHHHHhCCCCCC---eEEEEcCchHHHHHHHH
Confidence            3556789999999999988765432211 11234556666666 6889999999997421   3333 3 5669999999


Q ss_pred             HhhCCC--CCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC-
Q 010008          177 TAILKP--HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY-  253 (520)
Q Consensus       177 ~all~p--GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~-  253 (520)
                      .+++.+  ||+|+.....+   +++.+.   ......|  +..+.++++ +++.+|+++++..+++ ++++|.+.+..+ 
T Consensus        95 ~~l~~~~~Gd~v~~~~~g~---~~~~~~---~~a~~~G--~~~~~~~~~-~~~~~~~~~~~~~i~~-~t~lV~~~h~et~  164 (377)
T 3e77_A           95 LNLIGLKAGRCADYVVTGA---WSAKAA---EEAKKFG--TINIVHPKL-GSYTKIPDPSTWNLNP-DASYVYYCANETV  164 (377)
T ss_dssp             HHHGGGSTTCEEEECCCSH---HHHHHH---HHHTTTS--EEEECSCCC-SSSCSCCCGGGCCCCT-TCSCEEEESEETT
T ss_pred             HhccCCCCCCeEEEEECCH---HHHHHH---HHHHHhC--CceEEeccC-CCcCCCCChHHhccCC-CccEEEEeCccCc
Confidence            999865  99998776533   333221   1122234  355555554 3456677777766766 889988775544 


Q ss_pred             -CCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCc-----chhh
Q 010008          254 -PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPV-----LGVE  326 (520)
Q Consensus       254 -p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~-----~~~~  326 (520)
                       +...|+     ||+++|+++++|++|++|.+..++.     ..|++++|.||++ ||.| |+++.+++..     ....
T Consensus       165 tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~-----~~~~~~~s~~K~~-gp~G~g~l~~~~~~l~~~~~~~p~  233 (377)
T 3e77_A          165 HGVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVS-----KFGVIFAGAQKNV-GSAGVTVVIVRDDLLGFALRECPS  233 (377)
T ss_dssp             TTEECSS-----CCCCTTCCEEEECTTTTTSSCCCGG-----GCSEEEEEGGGTT-SCTTCEEEEEETTSCSCCCTTSCG
T ss_pred             hheEchh-----hhccCCCEEEEEcccccCCCCCchh-----hcCEEEEeccccc-CCCccEEEEEcHHHHhhccCCCCc
Confidence             446777     5788999999999999887644432     2457899999999 8998 9999988521     0001


Q ss_pred             H---HHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCC--CC-eeE
Q 010008          327 L---ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVEL-GYKLVSGGS--DN-HLV  398 (520)
Q Consensus       327 l---~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~-~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt--~~-~~~  398 (520)
                      +   ....+   .....++|+...++++..|++.+.+. +.+...++..+.++++.+.|.+. |+.+.....  .. ..+
T Consensus       234 ~~~~~~~~~---~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~iv  310 (377)
T 3e77_A          234 VLEYKVQAG---NSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNI  310 (377)
T ss_dssp             GGCHHHHHT---TTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEE
T ss_pred             hhhHHHHhh---cCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEE
Confidence            1   11111   12235799999999999999988766 67888899999999999999985 887533111  11 223


Q ss_pred             EEEecCCCCCH-----HHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          399 LVDLRPMGIDG-----ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       399 ~vd~~~~g~~~-----~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      .+.+.  ++++     ..+...|++.||.+.    +|+.   ..+++|+|+...+    +++|+++++++|+++++.
T Consensus       311 sf~~~--~~~~~~~~~~~~l~~l~~~Gi~~~----~g~~---~~g~iRiS~~~~~----t~edId~l~~al~~~~~~  374 (377)
T 3e77_A          311 PFRIG--NAKGDDALEKRFLDKALELNMLSL----KGHR---SVGGIRASLYNAV----TIEDVQKLAAFMKKFLEM  374 (377)
T ss_dssp             EEEES--STTCCHHHHHHHHHHHHHTTEESC----BCCT---TTCSEEEECCTTS----CHHHHHHHHHHHHHHHHH
T ss_pred             EEEcC--CCCCchhHHHHHHHHHHHCCcEEe----CCCC---cCCEEEEECCCCC----CHHHHHHHHHHHHHHHHH
Confidence            44443  3332     234556668999973    3442   2457999987654    489999999999988753

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.91  E-value=3.5e-23  Score=212.87  Aligned_cols=328  Identities=11%  Similarity=0.050  Sum_probs=221.5

Q ss_pred             ccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCC---CCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeec-C-Ch
Q 010008           94 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKR---YYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP-L-SG  168 (520)
Q Consensus        94 ~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~r---yy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~-~-sG  168 (520)
                      +.+++.++..++|+.|+++|...+.+.+..  |..-   .+.+.++.+.+| .+++.++++||++.++   +|.. + +|
T Consensus         5 ~~~~f~pgpt~~~~~V~~a~~~~~~~~~~~--~~s~~~~~hr~~~~~~~~~-~~r~~la~ll~~~~~~---~v~f~t~~~   78 (361)
T 3m5u_A            5 RKINFSAGPSTLPLEILEQAQKELCDYQGR--GYSIMEISHRTKVFEEVHF-GAQEKAKKLYELNDDY---EVLFLQGGA   78 (361)
T ss_dssp             CCEECCSSSCCCCHHHHHHHHHTSSSGGGS--SSCGGGSCSSSHHHHHHHH-HHHHHHHHHHTCCTTE---EEEEESSHH
T ss_pred             ceEeecCCCCCCcHHHHHHHHHHHHhcccC--CceeeccCCCCHHHHHHHH-HHHHHHHHHhCCCCCc---eEEEEcCcH
Confidence            567889999999999999999988765532  2211   133556666666 6889999999996421   3333 4 45


Q ss_pred             HHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCC-CCHHHHHHHhhhcCCcEEE
Q 010008          169 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL-VDYDMLEKTAILFRPKLII  247 (520)
Q Consensus       169 s~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~-iD~d~le~~i~~~~pklIi  247 (520)
                      |+++.+++.+++ +||+++....   |+++|.+..   .....|.  ++..++++.+... ++++. +  +++ ++++|.
T Consensus        79 T~a~n~~~~~~~-~~~~~~~i~~---~~~~~~~~~---~a~~~G~--~v~~~~~~~~g~~~~~~~~-~--l~~-~t~lv~  145 (361)
T 3m5u_A           79 SLQFAMIPMNLA-LNGVCEYANT---GVWTKKAIK---EAQILGV--NVKTVASSEESNFDHIPRV-E--FSD-NADYAY  145 (361)
T ss_dssp             HHHHHHHHHHHC-CSSCEEEEEC---SHHHHHHHH---HHHHTTC--CEEEEEECTTTTSCSCCCC-C--CCT-TSSEEE
T ss_pred             HHHHHHHHHhcC-CCCeEEEEeC---CHHHHHHHH---HHHHcCC--ceEEEecccCcCCCcCChh-h--cCC-CCCEEE
Confidence            599999999998 8997744332   233333211   1122344  4444555533211 56666 4  766 899988


Q ss_pred             EcCCCC--CCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcch
Q 010008          248 AGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLG  324 (520)
Q Consensus       248 ~~~s~~--p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~  324 (520)
                      +.+..+  +...|.     |++ +|+++++|++|++|.+..++     ...|++++|.||++ ||.| |+++.++     
T Consensus       146 ~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~~id~-----~~~d~~~~s~~K~~-gp~G~g~l~~~~-----  208 (361)
T 3m5u_A          146 ICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSRKVDF-----SNIALFYGGVQKNA-GISGLSCIFIRK-----  208 (361)
T ss_dssp             EESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSSCCCC-----TTEEEEEEETTTTS-SCTTCEEEEEEH-----
T ss_pred             EeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCCCCCc-----ccCCEEEEechhcc-CCCccEEEEEcH-----
Confidence            875544  334441     444 49999999999988764443     24799999999999 7998 9999988     


Q ss_pred             hhHHHhhcccC------------CCCCCCCChHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHCC-C-EEe
Q 010008          325 VELESAINNAV------------FPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELG-Y-KLV  389 (520)
Q Consensus       325 ~~l~~~i~~~~------------~p~~~g~p~~~~iaala~al~~~~~~-~~~~~~~~i~~na~~l~~~L~~~G-~-~v~  389 (520)
                       ++.+++....            .....|+|+...+.++..|++.+.+. +.+...++..+.++++.+.|.+.+ + .+.
T Consensus       209 -~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~  287 (361)
T 3m5u_A          209 -DMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGH  287 (361)
T ss_dssp             -HHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEES
T ss_pred             -HHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeecc
Confidence             4433332100            11234789999999999999988877 688889999999999999998865 5 554


Q ss_pred             cCC--CCCeeEEEEecC-CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          390 SGG--SDNHLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       390 ~~g--t~~~~~~vd~~~-~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      .+.  ...+++.+.+.. .+++ ..+...|++.||.+..    |+.   ..+++|+|+...+    +++|+++++++|++
T Consensus       288 ~~~~~rs~~ivsf~~~~~~~~~-~~~~~~L~~~gI~~~~----g~~---~~g~iRiS~~~~~----t~edId~l~~al~~  355 (361)
T 3m5u_A          288 ADKKDRSLMNVSFNIAKNKDLE-PLFVKEAEEAGMIGLK----GHR---ILGGIRASIYNAL----NLDQVKTLCEFMKE  355 (361)
T ss_dssp             SCGGGBCSSEEEEEESSCTTHH-HHHHHHHHHTTEECCB----CCT---TTCSEEEECCTTS----CHHHHHHHHHHHHH
T ss_pred             CCHHHcCCeEEEEECCCchhhh-HHHHHHHHHCCCEEec----CCC---ccCeEEEEccCCC----CHHHHHHHHHHHHH
Confidence            321  112344455542 2233 4566888999999743    332   2356999987655    48999999999998


Q ss_pred             HHHH
Q 010008          467 GVEI  470 (520)
Q Consensus       467 ~l~~  470 (520)
                      +.+.
T Consensus       356 ~~~~  359 (361)
T 3m5u_A          356 FQGK  359 (361)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7753

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.91  E-value=7.9e-24  Score=216.35  Aligned_cols=326  Identities=12%  Similarity=0.087  Sum_probs=212.9

Q ss_pred             cceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCC----cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh--
Q 010008           95 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG----GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG--  168 (520)
Q Consensus        95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~----g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG--  168 (520)
                      .+.+.+++..+|+.|++++.+.+.+. .  .++...|.    .... ..+.+.+++++++++|++..+   +|.+++|  
T Consensus         4 ~~~~~~g~~~~p~~v~~a~~~~~~~~-~--~~~~~~~~~~~~~~~~-~~~~~~l~~~la~~~g~~~~~---~v~~~~g~g   76 (360)
T 1w23_A            4 VFNFNAGPSALPKPALERAQKELLNF-N--DTQMSVMELSHRSQSY-EEVHEQAQNLLRELLQIPNDY---QILFLQGGA   76 (360)
T ss_dssp             CEECCSSSCCCCHHHHHHHHHTSSSS-T--TSSSCGGGSCTTSHHH-HHHHHHHHHHHHHHHTCCTTE---EEEEESSHH
T ss_pred             eEeecCCCcCCCHHHHHHHHHHhhhh-c--cccccccccCCCCHHH-HHHHHHHHHHHHHHhCCCCCc---eEEEECCcc
Confidence            56777888889999999999887542 1  12211111    1122 223334668899999996311   3444443  


Q ss_pred             HHHHHHHHHhhCCC---CCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHH-HhhhcCCc
Q 010008          169 SPANFEVYTAILKP---HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEK-TAILFRPK  244 (520)
Q Consensus       169 s~A~~~~l~all~p---GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~-~i~~~~pk  244 (520)
                      ++|+.+++.+++.+   ||.|+...+.|      ...   ..+...|   +++.++++++++.+|++++++ ++++ +||
T Consensus        77 t~al~~~~~~l~~~~~~g~~vi~~~~~~------~~~---~~~~~~g---~~~~v~~~~~~~~~d~~~l~~~~i~~-~~k  143 (360)
T 1w23_A           77 SLQFTMLPMNLLTKGTIGNYVLTGSWSE------KAL---KEAKLLG---ETHIAASTKANSYQSIPDFSEFQLNE-NDA  143 (360)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEEECSHHHH------HHH---HHHHTTS---EEEEEEECGGGTSCSCCCGGGCCCCT-TEE
T ss_pred             hHHHHHHHHHhcCCCCcccEEEecchhH------HHH---HHHHHhC---CeEEeecccccCcCCccchHhhccCC-CCC
Confidence            68999999999876   55566544322      110   0122334   455666664456689999988 8866 899


Q ss_pred             EEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCC
Q 010008          245 LIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDP  321 (520)
Q Consensus       245 lIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~  321 (520)
                      +|++++++||+  ..+     +|++++|++|++|++|..+....     ++...|++++|+||+++ |.| |++++++  
T Consensus       144 ~v~~~~~~nptG~~~~-----~i~~~~~~~li~D~a~~~~~~~~-----~~~~~di~~~s~sK~~~-~~G~G~~~~~~--  210 (360)
T 1w23_A          144 YLHITSNNTIYGTQYQ-----NFPEINHAPLIADMSSDILSRPL-----KVNQFGMIYAGAQKNLG-PSGVTVVIVKK--  210 (360)
T ss_dssp             EEEEESEETTTTEECS-----SCCCCCSSCEEEECTTTTTSSCC-----CGGGCSEEEEETTTTTS-CTTCEEEEEEH--
T ss_pred             EEEEeCCCCCcceecc-----cccccCCceEEEechhhcCCCCc-----CcccCCEEEEEcccccC-CCCcEEEEEcH--
Confidence            99998888776  445     33448999999999987664321     22223899999999885 556 9999987  


Q ss_pred             cchhhHHHhhcccC-----------CCCCCCCChHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHCC-C-E
Q 010008          322 VLGVELESAINNAV-----------FPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELG-Y-K  387 (520)
Q Consensus       322 ~~~~~l~~~i~~~~-----------~p~~~g~p~~~~iaala~al~~~~~~-~~~~~~~~i~~na~~l~~~L~~~G-~-~  387 (520)
                          ++.+++....           .....++++...++++..+++.+... ++++..+++.++++.+.+.|.+.+ + .
T Consensus       211 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  286 (360)
T 1w23_A          211 ----DLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYV  286 (360)
T ss_dssp             ----HHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSE
T ss_pred             ----HHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCccc
Confidence                5555544321           01223667777777777778765433 457788899999999999998865 5 5


Q ss_pred             Eec-CC-CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHH
Q 010008          388 LVS-GG-SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  465 (520)
Q Consensus       388 v~~-~g-t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~  465 (520)
                      ... +. ..++++++++.. +.+..++.+.|.+.||.+    .||..   .+++|||++...+    +++|++++++.|+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~----~~~~~---~~~~iRis~~~~~----~~~~i~~~~~~l~  354 (360)
T 1w23_A          287 GHAEKGSRSLMNVTFNLRN-EELNQQFLAKAKEQGFVG----LNGHR---SVGGCRASIYNAV----PIDACIALRELMI  354 (360)
T ss_dssp             ESSCGGGBCSSEEEEECSS-HHHHHHHHHHHHHTTEES----CBCCT---TTCSEEEECCTTS----CHHHHHHHHHHHH
T ss_pred             ccCCchhccCcEEEEEcCC-CccHHHHHHHHHHCCeee----ecCCC---CCCeEEEEecCCC----CHHHHHHHHHHHH
Confidence            431 21 123466777642 123455666788899998    34432   2578999987543    4899999999998


Q ss_pred             HHHH
Q 010008          466 EGVE  469 (520)
Q Consensus       466 ~~l~  469 (520)
                      ++++
T Consensus       355 ~~~~  358 (360)
T 1w23_A          355 QFKE  358 (360)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8765

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.91  E-value=1.2e-22  Score=208.51  Aligned_cols=318  Identities=14%  Similarity=0.071  Sum_probs=208.1

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      ..|+|..+++.  .++.|++++...+.+  ..+|+..    +   ..+++    +.+++++|++++    +|.+++|+ +
T Consensus        25 ~~idl~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~----~---~~~l~----~~la~~~~~~~~----~v~~~~g~~~   87 (364)
T 1lc5_A           25 QLLDFSANINPLGMPVSVKRALIDNLDC--IERYPDA----D---YFHLH----QALARHHQVPAS----WILAGNGETE   87 (364)
T ss_dssp             GSEECSSCCCTTCCCHHHHHHHHHTGGG--GGSCCCT----T---CHHHH----HHHHHHHTSCGG----GEEEESSHHH
T ss_pred             ceEEeccccCCCCCCHHHHHHHHHHHHH--hhcCCCC----C---HHHHH----HHHHHHHCcCHH----HEEECCCHHH
Confidence            46888877764  679999999887753  1234321    1   23444    677888898865    34456665 8


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEEEEc
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAG  249 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklIi~~  249 (520)
                      |+.+++.++  +||+|++.+|.|.+...        .+...|.  +++.++++++ +..+ ++++.+.+++ ++++|+++
T Consensus        88 al~~~~~~~--~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~-l~~~~~~~~~-~~~~v~i~  153 (364)
T 1lc5_A           88 SIFTVASGL--KPRRAMIVTPGFAEYGR--------ALAQSGC--EIRRWSLREADGWQL-TDAILEALTP-DLDCLFLC  153 (364)
T ss_dssp             HHHHHHHHH--CCSEEEEEESCCTHHHH--------HHHHTTC--EEEEEECCGGGTTCC-CTTHHHHCCT-TCCEEEEE
T ss_pred             HHHHHHHHc--CCCeEEEeCCCcHHHHH--------HHHHcCC--eEEEEeCCcccccch-hHHHHHhccC-CCCEEEEe
Confidence            999888888  78999999988765321        2233454  5566666532 2222 4656666655 78999888


Q ss_pred             CCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCC-CC--cccEEEeccCccc--CCCCceEEE-ee
Q 010008          250 ASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP-FK--YCDVVTTTTHKSL--RGPRGGMIF-FK  318 (520)
Q Consensus       250 ~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p-~~--~aDiv~~S~hK~l--~GprgG~I~-~~  318 (520)
                      .++||+  ..+   +++|.++|+++|+++|+|++|..+ ...+..... +.  ..+++++|+||++  +|.|.|+++ .+
T Consensus       154 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~  232 (364)
T 1lc5_A          154 TPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDF-IPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSD  232 (364)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGG-STTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhh-ccCccchhhHhccCCCEEEEEECchhhcCCccceEEEEECC
Confidence            888886  566   889999999999999999997543 221111011 11  4678999999997  577889999 77


Q ss_pred             CCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCCee
Q 010008          319 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHL  397 (520)
Q Consensus       319 ~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~~  397 (520)
                      +      ++.+.+.....+   .+++....++...+++.  ....++..+++.++++.+.+.|.+. |+.+..+  ...+
T Consensus       233 ~------~~~~~l~~~~~~---~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~g~~  299 (364)
T 1lc5_A          233 D------AAMARMRRQQMP---WSVNALAALAGEVALQD--SAWQQATWHWLREEGARFYQALCQLPLLTVYPG--RANY  299 (364)
T ss_dssp             H------HHHHHHHHHSCT---TCSCHHHHHHHHHGGGC--HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCC--SSSE
T ss_pred             H------HHHHHHHHhCCC---CCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCC--CCeE
Confidence            6      676666543322   12334444443334432  1234667778888899999999875 8877543  2345


Q ss_pred             EEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          398 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       398 ~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +++++..   +..++.+.|.+.||.+..    |.. +...++++||++.       +++|++++.+.|+++++.
T Consensus       300 ~~~~~~~---~~~~l~~~l~~~gi~v~~----g~~~~~~~~~~iRis~~-------~~~~~~~l~~~l~~~~~~  359 (364)
T 1lc5_A          300 LLLRCER---EDIDLQRRLLTQRILIRS----CANYPGLDSRYYRVAIR-------SAAQNERLLAALRNVLTG  359 (364)
T ss_dssp             EEEEESC---TTCCHHHHHHTTTEECEE----CTTSTTCCTTEEEEECC-------CHHHHHHHHHHHHHHC--
T ss_pred             EEEECCC---cHHHHHHHHHHCCcEEee----CcccCCCCCCEEEEEeC-------CHHHHHHHHHHHHHHhhc
Confidence            6777642   234566777788999854    322 1223578999953       378899999999887653

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.91  E-value=1.6e-22  Score=209.71  Aligned_cols=316  Identities=15%  Similarity=0.150  Sum_probs=211.1

Q ss_pred             cCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh
Q 010008          100 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI  179 (520)
Q Consensus       100 asen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al  179 (520)
                      .+...+++.+++++...+.+.+        |+ ..+..+++|    +.+++++|.+.     .|.++||++|+..++.++
T Consensus         8 ~~~~~~~~~~~~a~~~~~~~~~--------~~-~~~~~~~l~----~~la~~~~~~~-----~i~~~sGt~a~~~al~~~   69 (390)
T 3b8x_A            8 LASSTWDDLEYKAIQSVLDSKM--------FT-MGEYVKQYE----TQFAKTFGSKY-----AVMVSSGSTANLLMIAAL   69 (390)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHTC--------CS-SCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHcCC--------CC-CChHHHHHH----HHHHHHHCCCc-----EEEECCHHHHHHHHHHHH
Confidence            3566789999999988876421        12 234445555    67888999873     466799999999999998


Q ss_pred             -------CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcC-C
Q 010008          180 -------LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA-S  251 (520)
Q Consensus       180 -------l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~-s  251 (520)
                             ++|||+|++++++|.+...        .+...|.  +++.++++++++.+|+++|++++++ ++++|++.. +
T Consensus        70 ~~~~~~~~~~g~~Vi~~~~~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~  138 (390)
T 3b8x_A           70 FFTKKPRLKKGDEIIVPAVSWSTTYY--------PLQQYGL--RVKFVDIDINTLNIDIESLKEAVTD-STKAILTVNLL  138 (390)
T ss_dssp             TSSSSCSCCTTCEEEEESSSCHHHHH--------HHHHTTC--EEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEEECGG
T ss_pred             HhhhhcCCCCcCEEEECCCCcHHHHH--------HHHHcCC--EEEEEecCccccCcCHHHHHHHhCc-CCeEEEEECCc
Confidence                   8999999999998765432        2233454  6777788766689999999999987 899988853 3


Q ss_pred             CCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEecc--CcccCCCCceEEEeeCCCcchhhHHH
Q 010008          252 AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTT--HKSLRGPRGGMIFFKKDPVLGVELES  329 (520)
Q Consensus       252 ~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~--hK~l~GprgG~I~~~~~~~~~~~l~~  329 (520)
                      .+  ..|+++|.++|+++|++|++|++|..|....+. ... ...|+.++|+  +|.+.+++||+++++++     ++.+
T Consensus       139 g~--~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~-~~g-~~~~~~~~s~~~~k~~~~g~gG~~~~~~~-----~l~~  209 (390)
T 3b8x_A          139 GN--PNNFDEINKIIGGRDIILLEDNCESMGATFNNK-CAG-TFGLMGTFSSFYSNHIATMEGGCIVTDDE-----EIYH  209 (390)
T ss_dssp             GC--CCCHHHHHHHHTTSCCEEEEECTTCTTCEETTE-ETT-SSSSEEEEECCTTSSSCSSSCEEEEESCH-----HHHH
T ss_pred             cC--hhhHHHHHHHHHHcCCEEEEECcCcccCEECCc-ccc-cccceEEEEccCCCCCccCCceEEEeCCH-----HHHH
Confidence            33  579999999999999999999999888765321 111 0236655443  35566678899999873     3433


Q ss_pred             hhcccCCC------------------------------CC-CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 010008          330 AINNAVFP------------------------------GL-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA  378 (520)
Q Consensus       330 ~i~~~~~p------------------------------~~-~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~  378 (520)
                      ++......                              +. .+.+.....++++ +++     .+++..++..++++++.
T Consensus       210 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~-~l~-----~l~~~~~~~~~~~~~l~  283 (390)
T 3b8x_A          210 ILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIE-QLK-----KLPRFISVRRKNAEYFL  283 (390)
T ss_dssp             HHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHH
Confidence            32211100                              11 1133444443333 232     34567788888999999


Q ss_pred             HHHHHC-CCEEecCCCC-C-eeEEEEecC-CCCCHHHHHHHHhhcCeEEcCCCCCCCC--C-CC-C--------------
Q 010008          379 SRLVEL-GYKLVSGGSD-N-HLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDK--S-AL-V--------------  436 (520)
Q Consensus       379 ~~L~~~-G~~v~~~gt~-~-~~~~vd~~~-~g~~~~~~~~~L~~~gI~v~~~~~Pg~~--~-~~-~--------------  436 (520)
                      +.|.+. |+++...... + +.+.+.+.. .+.+.+++.+.|.+.||.++.. .|+..  . +. .              
T Consensus       284 ~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (390)
T 3b8x_A          284 DKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPI-VTGNFLKNTDVLKYFDYTVHNNVDNAE  362 (390)
T ss_dssp             HHHTTCSSEEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBCS-TTSSGGGCHHHHTTCEEEESSCCHHHH
T ss_pred             HHhcCCCCcccCCCCCCcccEEEEEEecCcCcccHHHHHHHHHHCCCCeeee-cCCchhhcchhhhcCCCCCcCCChHHH
Confidence            999874 7777543211 2 234445542 1567888999999999999753 22211  1 10 0              


Q ss_pred             ---CCEEEEccCCccccCCCHHHHHHHHHHH
Q 010008          437 ---PGGIRIGSPAMTTRGFSEKEFVAIADFI  464 (520)
Q Consensus       437 ---~~giRig~~~~tt~g~~~~d~~~la~~i  464 (520)
                         .+.|||++...    ++++|++++++.|
T Consensus       363 ~~~~~~l~l~~~~~----~t~~di~~i~~~l  389 (390)
T 3b8x_A          363 YLDKNGLFVGNHQI----ELFDEIDYLREVL  389 (390)
T ss_dssp             HHHHHEEEEECCSS----CCHHHHHHHHHHT
T ss_pred             HHhcCEEEeeCCCC----CCHHHHHHHHHhh
Confidence               13589987654    4699999999876

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.91  E-value=3e-24  Score=222.77  Aligned_cols=333  Identities=13%  Similarity=0.066  Sum_probs=211.1

Q ss_pred             cceEecCCCCChHHHHHHHhhhhhccCCCCCCC-CCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeec--CChHHH
Q 010008           95 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPG-KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP--LSGSPA  171 (520)
Q Consensus        95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~-~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~--~sGs~A  171 (520)
                      ...+.++..++|+.|+++|...+.+.+..|... .-.+.+.++.+.+| .+++.+++++|++.++   +|..  .+||++
T Consensus        28 ~yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~-~ar~~la~ll~~~~~~---evif~t~~~T~a  103 (386)
T 3qm2_A           28 VFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAE-EAEQDFRDLLNIPSNY---KVLFCHGGGRGQ  103 (386)
T ss_dssp             CEECCSSSCCCCHHHHHHHTCC-----------------------CCH-HHHHHHHHHHTCCTTE---EEEEEESCTTHH
T ss_pred             CccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHH-HHHHHHHHHhCCCCCc---eEEEEcCCchHH
Confidence            355678888999999999998887654322110 01122444445555 5789999999996421   2333  467799


Q ss_pred             HHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccC-CCCCC-CCHHHHHHHhhhcCCcEEEEc
Q 010008          172 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTGL-VDYDMLEKTAILFRPKLIIAG  249 (520)
Q Consensus       172 ~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d-~~~~~-iD~d~le~~i~~~~pklIi~~  249 (520)
                      +.+++.+++++||+|++....   +++|.+..   .....| .+..+  +++ ++.+. +|++++++++++ +|++|.+.
T Consensus       104 ~n~ai~~l~~~gd~v~~~~~~---~~~~~~~~---~a~~~G-~v~~v--~~~~~~~G~~~~~~~~~~~l~~-~t~lV~~~  173 (386)
T 3qm2_A          104 FAGVPLNLLGDKTTADYVDAG---YWAASAIK---EAKKYC-APQII--DAKITVDGKRAVKPMREWQLSD-NAAYLHYC  173 (386)
T ss_dssp             HHHHHHHHCTTCCEEEEEESS---HHHHHHHH---HHTTTS-EEEEE--ECEEEETTEEEECCGGGCCCCT-TCSCEEEC
T ss_pred             HHHHHHhccCCCCeEEEEeCC---HHHHHHHH---HHHHhC-CeEEE--ecCcccCCCCCCchHHHhhcCC-CCcEEEEE
Confidence            999999999999998866543   33333211   112234 33443  343 12343 788888888877 89998887


Q ss_pred             CCCC--CCC-CCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchh
Q 010008          250 ASAY--PRD-FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGV  325 (520)
Q Consensus       250 ~s~~--p~~-~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~  325 (520)
                      ...+  +.. .|+++|.     +|+++++|++|+.|.+..++.     ..|++++|.||++ ||.| |+++.+++     
T Consensus       174 h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~-----~~~~~~~s~hK~l-GP~G~g~l~v~~~-----  237 (386)
T 3qm2_A          174 PNETIDGIAIDETPDFG-----PEVVVTADFSSTILSAPLDVS-----RYGVIYAGAQKNI-GPAGLTLVIVRED-----  237 (386)
T ss_dssp             SEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSSCCCGG-----GCSEEEEETTTTT-CCTTEEEEEEEGG-----
T ss_pred             CCcCCcCEecCchhhhc-----CCCEEEEEcccccCCCCCCcc-----ccCEEEEeccccc-CCCccEEEEECHH-----
Confidence            5544  444 6788775     799999999999887654432     2367889999999 7999 99999984     


Q ss_pred             hHHHhhccc-----------CCCCCCCCChHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHCCCEEe-cCC
Q 010008          326 ELESAINNA-----------VFPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKVVSNCRALASRLVELGYKLV-SGG  392 (520)
Q Consensus       326 ~l~~~i~~~-----------~~p~~~g~p~~~~iaala~al~~~~~~-~~~~~~~~i~~na~~l~~~L~~~G~~v~-~~g  392 (520)
                       +.+++...           ..+...|+|+...++++..|++.+... +.++..++..+.++++.+.|.+.|+... ...
T Consensus       238 -~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~  316 (386)
T 3qm2_A          238 -LLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVAQ  316 (386)
T ss_dssp             -GCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBCG
T ss_pred             -HHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCH
Confidence             21111100           011124688888999999999988765 6788888999999999999988776322 111


Q ss_pred             --CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          393 --SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       393 --t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                        ...+.+.+.+...+++ ..+...|++.||.+..    |+.   ..+++|+|+...+    +++|+++++++|+++.+.
T Consensus       317 ~~rs~~iv~f~~~~~~~~-~~~~~~L~~~gI~~~~----g~~---~~~~iRiS~~~~~----t~edId~l~~~l~~~~~~  384 (386)
T 3qm2_A          317 ANRSRMNVPFQLADNTLD-KVFLEESFAAGLHALK----GHR---VVGGMRASIYNAM----PIEGVKALTDFMIDFERR  384 (386)
T ss_dssp             GGBCSSEEEEEESSGGGH-HHHHHHHHHTTEECCB----CCT---TTCSEEEECCTTS----CHHHHHHHHHHHHHHHHH
T ss_pred             HHcCceEEEEECCCcccc-HHHHHHHHHCCCEEeC----CCC---CcCeEEEEcCCCC----CHHHHHHHHHHHHHHHHh
Confidence              1123444555432344 4556668999999743    332   1356999986554    489999999999987653

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.91  E-value=5.3e-23  Score=212.75  Aligned_cols=331  Identities=16%  Similarity=0.089  Sum_probs=202.3

Q ss_pred             HHHHHHHHHHHhh--ccceEecCC--CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCC
Q 010008           81 VCEIITKEKERQF--KSLELIASE--NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE  156 (520)
Q Consensus        81 ~~~~~~~e~~~~~--~~i~Liase--n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~  156 (520)
                      .+..+....+...  +.+++...+  .++++.|++++.     .|          ++.   ..+++..++.+++++|++.
T Consensus        14 ~~~~~~~~i~~~g~~~v~~~~~~~~~~~~~~~v~~a~~-----~~----------~~~---~~~~~~~~~~~a~~~g~~~   75 (374)
T 2aeu_A           14 ARKIILEILNEKGRDALYDLSGLSGGFLIDEKDKALLN-----TY----------IGS---SYFAEKVNEYGLKHLGGDE   75 (374)
T ss_dssp             HHHHHHHHHHHTCGGGCEECSSCCCCCCCCHHHHHHHT-----ST----------THH---HHHHHHHHHHHHHHHTCCT
T ss_pred             HHHHHHHHHhccCccceeeecccCCCCCCCHHHHHHHH-----Hh----------cCc---hHHHHHHHHHHHHHhCCCC
Confidence            3444444443332  356666543  468999999996     11          111   2344455567788999842


Q ss_pred             CCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHH
Q 010008          157 NKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEK  236 (520)
Q Consensus       157 ~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~  236 (520)
                      .+.  .+.+++|++|+..++.++  |||+|+++++.|++|+....     .+...|.  +++.+        .|++++++
T Consensus        76 ~~~--~~~~~ggt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~-----~~~~~g~--~~~~v--------~d~~~l~~  136 (374)
T 2aeu_A           76 NDK--CVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPSIER-----SCKIVNA--KYFES--------DKVGEILN  136 (374)
T ss_dssp             TEE--EEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHHH-----HHHHTTC--EEEEE--------SCHHHHHT
T ss_pred             cce--EEEEcChHHHHHHHHHhC--CCCEEEEecCCCCccHHHHH-----HHHHcCc--EEEEe--------CCHHHHHh
Confidence            111  245577779999999988  99999999998887753110     1223454  44443        38899988


Q ss_pred             HhhhcCCcE-EEEcCCCCCC---CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEEEeccCcccCCCC
Q 010008          237 TAILFRPKL-IIAGASAYPR---DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR  311 (520)
Q Consensus       237 ~i~~~~pkl-Ii~~~s~~p~---~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S~hK~l~Gpr  311 (520)
                      + ++ ++|+ |++++++||+   ..++++|.++|+++|+++|+|++|..+........+++. ++|++++|+||+++|||
T Consensus       137 ~-~~-~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~~  214 (374)
T 2aeu_A          137 K-ID-KDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPR  214 (374)
T ss_dssp             T-CC-TTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSCS
T ss_pred             c-CC-CccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccCcc
Confidence            8 55 8999 9888888875   568999999999999999999997665310010111222 57999999999999999


Q ss_pred             ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH----HHHHHH----
Q 010008          312 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL----ASRLVE----  383 (520)
Q Consensus       312 gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l----~~~L~~----  383 (520)
                      +|++++++      ++.+++....... .++++....++...+++...    .+..++..++++.+    .+.|.+    
T Consensus       215 ~G~~~~~~------~~~~~l~~~~~~~-~~~~~~~~~~a~~~al~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~L~~  283 (374)
T 2aeu_A          215 GGLLAGKK------ELVDKIYIEGTKF-GLEAQPPLLAGIYRALKNFN----LERIRKAFERAKNFDLSKIEKLNKELKA  283 (374)
T ss_dssp             CEEEEEEH------HHHHHHHHHHHTT-TCBCCHHHHHHHHHHHHHCC----HHHHHHHHHHHHHCCCHHHHHHHHHHTT
T ss_pred             eEEEEECH------HHHHHHHHhhccc-cCCCCHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999988      6766665432211 12334444445555666531    12234444555444    344433    


Q ss_pred             ----CCCEEecCCCCCeeEEE-EecCCCCC---HH-HHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCH
Q 010008          384 ----LGYKLVSGGSDNHLVLV-DLRPMGID---GA-RVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSE  454 (520)
Q Consensus       384 ----~G~~v~~~gt~~~~~~v-d~~~~g~~---~~-~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~  454 (520)
                          .|+.+...+. +.++++ ++.. ..+   .. .+.++|+++||.+..    |...+...+++||+.....   ..+
T Consensus       284 ~~~~~g~~~~~~~~-g~~~~~~~~~~-~~~~~~~~~~~~~ll~~~gV~v~~----g~~~~~~~~~lRi~~~~~~---~~~  354 (374)
T 2aeu_A          284 IDDNINIVYERTPT-GFVIKRVYKDD-TINIKKLIEIGFNLLKNYGIITIT----VAGMPGASKSLRIDLTSRD---AER  354 (374)
T ss_dssp             TCTTEEEEEEECSS-EEEEEEEESSH-HHHHHHHHHHHHHHHHHHCEECST----TSSSCSSCCSEEEETTSGG---GGG
T ss_pred             hhhccCcceeeCCc-eEEEEeecccc-cccccchHHHHHHHHHhCCEEEec----CCCCCCCCCeEEEEcCCch---HHH
Confidence                2455433322 233332 3321 000   01 344677889999954    3221223568999965322   234


Q ss_pred             HHHHHHHHHHHHHHHH
Q 010008          455 KEFVAIADFIHEGVEI  470 (520)
Q Consensus       455 ~d~~~la~~i~~~l~~  470 (520)
                      .+++++++.++++++.
T Consensus       355 ~~l~~l~~~l~~~l~~  370 (374)
T 2aeu_A          355 IDDNYIIKAIVESIKM  370 (374)
T ss_dssp             SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4588888888887764

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.91  E-value=9.2e-23  Score=214.37  Aligned_cols=338  Identities=14%  Similarity=0.146  Sum_probs=206.1

Q ss_pred             ccceEecCCC--CChHHHHHHHhhhhhccCC-CCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-
Q 010008           94 KSLELIASEN--FTSRAVMEAVGSCLTNKYS-EGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-  169 (520)
Q Consensus        94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y~-~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-  169 (520)
                      +.|+|..++.  .+++.|++++...+.+... .|+.  . |+......++++...+++.+.++++++    +|.+++|+ 
T Consensus        57 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~--~-y~~~~g~~~l~~~ia~~~~~~~~~~~~----~i~~t~G~~  129 (432)
T 3ei9_A           57 QVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYS--G-YGAEQGAKPLRAAIAKTFYGGLGIGDD----DVFVSDGAK  129 (432)
T ss_dssp             CCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCC--C-CCCTTCCHHHHHHHHHHHHTTTTCCGG----GEEEESCHH
T ss_pred             CeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCcc--C-CCCCCCCHHHHHHHHHHHHccCCCCcc----eEEECCChH
Confidence            4688877764  3789999999887763211 1211  1 222222346665555555544577664    45567887 


Q ss_pred             HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccc----------eEEEEEcccCCC-CCCCCHHHHHHHh
Q 010008          170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI----------YFESMPYRLDES-TGLVDYDMLEKTA  238 (520)
Q Consensus       170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~----------~~~~v~~~~d~~-~~~iD~d~le~~i  238 (520)
                      +++. ++.++++|||+|++.+|.|.++...        +...|.          +.+++.++++.+ +...|+++     
T Consensus       130 ~al~-~l~~l~~~gd~Vl~~~p~y~~~~~~--------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----  195 (432)
T 3ei9_A          130 CDIS-RLQVMFGSNVTIAVQDPSYPAYVDS--------SVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----  195 (432)
T ss_dssp             HHHH-HHHHHHCTTCCEEEEESCCTHHHHH--------HHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----
T ss_pred             HHHH-HHHHHcCCCCEEEEeCCCCHHHHHH--------HHHcCCcccccccccccCceEEeccCcccCCcCChhh-----
Confidence            6665 4688899999999999988765321        111121          013344555432 24555443     


Q ss_pred             hhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCC--CC---cccEEEeccCccc-
Q 010008          239 ILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP--FK---YCDVVTTTTHKSL-  307 (520)
Q Consensus       239 ~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p--~~---~aDiv~~S~hK~l-  307 (520)
                      .+ ++++|+++.++||+  .++   +++|+++|+++|++||+|++|.. ++..+.....  +.   ..++++.|+||++ 
T Consensus       196 ~~-~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g  273 (432)
T 3ei9_A          196 VG-RTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAM-YMSDDNPRSIFEIPGAEEVAMETASFSNYAG  273 (432)
T ss_dssp             CC-CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGG-GCCSSCCSSGGGSTTGGGTEEEEEESHHHHC
T ss_pred             CC-CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHh-hccCCCCCChhhcCCCCCeEEEEecchhccC
Confidence            23 78999998899987  444   66777889999999999999764 3333221111  11   3458899999987 


Q ss_pred             -CCCCceEEEeeCCCc--chhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC
Q 010008          308 -RGPRGGMIFFKKDPV--LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL  384 (520)
Q Consensus       308 -~GprgG~I~~~~~~~--~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~  384 (520)
                       +|+|.|+++++++..  ....+.+.+........ ++++....++...++........++..+++.++++.+.+.|.+.
T Consensus       274 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  352 (432)
T 3ei9_A          274 FTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCF-NGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL  352 (432)
T ss_dssp             TTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSC-CCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcccceEEEEEChHHhhcchHHHHHHHHHHhcccc-CCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence             788899999988420  00001333332211111 22333333333334432111234677888999999999999988


Q ss_pred             CCEEecCCCCCeeEEEEecCCCCCHHHH-HHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHH
Q 010008          385 GYKLVSGGSDNHLVLVDLRPMGIDGARV-EKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADF  463 (520)
Q Consensus       385 G~~v~~~gt~~~~~~vd~~~~g~~~~~~-~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~  463 (520)
                      |+++..+ ..+.++|+++.  +.+..++ ..+++++||.+..+..++   +..++++||++.      .+++++++.++.
T Consensus       353 g~~~~~~-~~~~~~~~~~~--~~~~~~~~~~ll~~~gv~v~~g~~f~---~~~~~~iRis~~------~~~e~l~~~l~r  420 (432)
T 3ei9_A          353 GYDVYGG-KNAPYVWVHFP--NQSSWDVFAEILEKTHVVTTPGSGFG---PGGEGFVRVSAF------GHRENILEACRR  420 (432)
T ss_dssp             TCCEEEC-SSSSEEEEECT--TSCHHHHHHHHHHHHCEECEEGGGGC---GGGTTEEEEECC------SCHHHHHHHHHH
T ss_pred             CceecCC-CcceEEEEECC--CCCHHHHHHHHHHHCCEEEeCchHhC---CCCCCEEEEEec------CCHHHHHHHHHH
Confidence            9887754 23466788886  4556554 455667899986543222   224678999952      257888888877


Q ss_pred             HHHH
Q 010008          464 IHEG  467 (520)
Q Consensus       464 i~~~  467 (520)
                      |++-
T Consensus       421 l~~~  424 (432)
T 3ei9_A          421 FKQL  424 (432)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.91  E-value=1.4e-22  Score=211.89  Aligned_cols=307  Identities=17%  Similarity=0.152  Sum_probs=201.1

Q ss_pred             HHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhc--cCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCC
Q 010008           80 EVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTN--KYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDEN  157 (520)
Q Consensus        80 ~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~--~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~  157 (520)
                      ++++.+.++.+++...++.+++.|.  ..|+++|......  .+. +..+.. | +....+.+|    +++++++|.+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~n~--~~vl~a~~~~~~~~~~~~-~~~~~~-y-~~~~~~~Le----~~lA~l~g~e~a   77 (409)
T 3jzl_A            7 AIRKKVETQIDDLQNKTDEIAEFNQ--AKVLDAFQENKVSDFHFH-PSTGYG-Y-DDEGRDTLE----RVYATVFKTEAA   77 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTTCCGGGGC-CCCTTC-T-TCHHHHHHH----HHHHHHHTCSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHhhhhhhccC-CCcCCC-C-ChhHHHHHH----HHHHHHhCCCcE
Confidence            4566666666767677777877774  6788888775422  111 111111 2 223355666    678899999862


Q ss_pred             CCceeee--cCChHHHHHHHHHhhCCCCCEEEEcC-CCCCccccccccc--cccccccccceEEEEEcccCCCCCCCCHH
Q 010008          158 KWGVNVQ--PLSGSPANFEVYTAILKPHDRIMGLD-LPHGGHLSHGFMT--PKRRVSGTSIYFESMPYRLDESTGLVDYD  232 (520)
Q Consensus       158 ~~~~~V~--~~sGs~A~~~~l~all~pGD~Vl~~~-~~~~ghls~g~~~--~~~~v~~~g~~~~~v~~~~d~~~~~iD~d  232 (520)
                          .|.  ++||++||.+++.++++|||+|++.+ +.|++.....-..  ....+...|.  +++.++++ +++.+|++
T Consensus        78 ----lv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~--~~~~v~~~-~~g~~d~e  150 (409)
T 3jzl_A           78 ----LVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHI--GYSSVPLL-ENGDVDFP  150 (409)
T ss_dssp             ----EEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTC--EEEECCCC-TTSCCCHH
T ss_pred             ----EEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCC--EEEEeCCC-CCCCcCHH
Confidence                443  68899999999999999999999998 7776543100000  0001223354  66777776 46889999


Q ss_pred             HHHHHhhhcCCcEEEEcC----CCCCC--CCCHHHHHHHHHH--hCCEEEEechhhcccccccccCCCCC-cccEEEecc
Q 010008          233 MLEKTAILFRPKLIIAGA----SAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTT  303 (520)
Q Consensus       233 ~le~~i~~~~pklIi~~~----s~~p~--~~d~~~i~~ia~~--~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S~  303 (520)
                      ++++++++ +||+|++..    ++||+  ..|+++|+++|++  +|+++++|++|..+...    ..|.. ++|++++|+
T Consensus       151 ~l~~ai~~-~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~~----~~p~~~g~Div~~S~  225 (409)
T 3jzl_A          151 RIAKKMTP-KTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEY----QEPPEVGADIIAGSL  225 (409)
T ss_dssp             HHHHHCCT-TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTSS----CCSGGGTCSEEEEET
T ss_pred             HHHHhccC-CCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCccccccc----CCccccCCeEEEECc
Confidence            99999987 899999987    77776  6689999999999  99999999997654321    23444 689999999


Q ss_pred             CcccCC---CCceEEEeeCCCcchhhHHHhhccc-CCCCC--CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 010008          304 HKSLRG---PRGGMIFFKKDPVLGVELESAINNA-VFPGL--QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL  377 (520)
Q Consensus       304 hK~l~G---prgG~I~~~~~~~~~~~l~~~i~~~-~~p~~--~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l  377 (520)
                      ||++.|   +.||++++++      ++.+++... ..++.  ..++......++..+++.     ...+.++..+|++.+
T Consensus       226 sK~lgg~~~~~GG~v~~~~------~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~-----~~~r~~~~~~~a~~l  294 (409)
T 3jzl_A          226 IKNPGGGLAKTGGYIAGKE------ALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFL-----APHVTAQAIKGARFT  294 (409)
T ss_dssp             TSGGGTTTCSSCEEEEECH------HHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred             cccCCccCCceEEEEEeCH------HHHHHHHHHhccccccccccccHHHHHHHHHHHhh-----HHHHHHHHHHHHHHH
Confidence            999976   5689999987      677766542 22222  122222111222223332     246778889999999


Q ss_pred             HHHHHHCCCEEecCCCCCe-----eEEEEecCCCCCHHHHHHHHhhcCe
Q 010008          378 ASRLVELGYKLVSGGSDNH-----LVLVDLRPMGIDGARVEKILDMASI  421 (520)
Q Consensus       378 ~~~L~~~G~~v~~~gt~~~-----~~~vd~~~~g~~~~~~~~~L~~~gI  421 (520)
                      ++.|++.|+++..+  .++     ++.+.+.. ......+.+.|+....
T Consensus       295 a~~L~~~g~~v~p~--~~~~~~~~i~~i~l~~-~~~~~~~~~~L~~~~~  340 (409)
T 3jzl_A          295 AAMLAEFGVEADPV--WDAPRTDLIQSVSFHN-KEKMVAFAQAIQAASP  340 (409)
T ss_dssp             HHHHHHTTCEEESC--TTSCCSSSCCEEECSC-HHHHHHHHHHHHHTSS
T ss_pred             HHHHHhCCCcccCC--CCCCCccEEEEEEeCC-HHHHHHHHHHHHhcCc
Confidence            99999999988543  223     44455531 1112335556666543

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.90  E-value=1.3e-22  Score=217.82  Aligned_cols=328  Identities=12%  Similarity=0.044  Sum_probs=211.0

Q ss_pred             ChHHHHHHHhhhhhcc---CCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCceeeecCChH-HHHHHHHHh
Q 010008          105 TSRAVMEAVGSCLTNK---YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGS-PANFEVYTA  178 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~---y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~sGs-~A~~~~l~a  178 (520)
                      .|+.++++....+.+.   ...+|+.      ......+++...+++.+.+|.+  ++    +|.+++|+ +|+..++.+
T Consensus       107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~------~~G~~~lr~~ia~~~~~~~g~~~~~~----~i~~t~G~~~al~~~~~~  176 (500)
T 3tcm_A          107 FSADSISRAKQILAMIPGRATGAYSH------SQGIHGLRDAIASGIASRDGFPANAD----DIFLTDGASPGVHLMMQL  176 (500)
T ss_dssp             SCHHHHHHHHHHHTTSTTSCSSSCCC------TTCCHHHHHHHHHHHHHHHSSCCCGG----GEEEESSSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCcCCCcCC------CcChHHHHHHHHHHHHhhcCCCCCcc----cEEEcCCHHHHHHHHHHH
Confidence            5666777666665542   1223332      2223456666667787777754  43    34456655 899999999


Q ss_pred             hC-CCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhc-----CCcEEEEcCC
Q 010008          179 IL-KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILF-----RPKLIIAGAS  251 (520)
Q Consensus       179 ll-~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~-----~pklIi~~~s  251 (520)
                      ++ +|||+|++++|.|.++..        .+...|.  +++.|+++++ ++.+|+++|++++++.     ++|+|++..+
T Consensus       177 l~~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p  246 (500)
T 3tcm_A          177 LIRNEKDGILVPIPQYPLYSA--------SIALHGG--ALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINP  246 (500)
T ss_dssp             HCCSTTEEEEEEESCCTHHHH--------HHHHTTC--EEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESS
T ss_pred             HcCCCCCEEEEeCCCcHhHHH--------HHHHcCC--EEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECC
Confidence            98 899999999998865431        2344555  6677777754 4689999999999864     6899988888


Q ss_pred             CCCC--CCC---HHHHHHHHHHhCCEEEEechhhccccccc-ccCCCC----------C-ccc-EEEeccCccc---CCC
Q 010008          252 AYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAAS-VVADPF----------K-YCD-VVTTTTHKSL---RGP  310 (520)
Q Consensus       252 ~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~-~~~~p~----------~-~aD-iv~~S~hK~l---~Gp  310 (520)
                      +||+  .++   +++|.++|+++|+++++|++|.. +++.+ ....++          . ..+ +++.|+||++   +|.
T Consensus       247 ~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~  325 (500)
T 3tcm_A          247 GNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQE-NIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGK  325 (500)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGG
T ss_pred             CCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccc-cccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCcc
Confidence            9987  444   66777779999999999999654 33322 111111          1 112 6678999988   589


Q ss_pred             CceEEEe---eCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHH----------hcCchhHHHHHHHHHHHHHH
Q 010008          311 RGGMIFF---KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH----------AQSPEFKVYQNKVVSNCRAL  377 (520)
Q Consensus       311 rgG~I~~---~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~----------~~~~~~~~~~~~i~~na~~l  377 (520)
                      |+||+++   ++      ++.+.+.....  ...+++....++++.+++.          .. .+..+..+++.++++.+
T Consensus       326 R~G~~~~~~~~~------~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l  396 (500)
T 3tcm_A          326 RGGYFEITGFSA------PVREQIYKIAS--VNLCSNITGQILASLVMNPPKASDESYASYK-AEKDGILASLARRAKAL  396 (500)
T ss_dssp             CCEEEEEESCCT------THHHHHHHHHH--TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCH------HHHHHHHHHHh--cccCCCHHHHHHHHHHhcCccccchhHHHHH-HHHHHHHHHHHHHHHHH
Confidence            9999998   55      55555543221  1223344444444444431          11 22355667788889999


Q ss_pred             HHHHHHC-CCEEecCCCCCeeEEEEecCC----------CCCHHH--HHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEcc
Q 010008          378 ASRLVEL-GYKLVSGGSDNHLVLVDLRPM----------GIDGAR--VEKILDMASITLNKNSVPGDKSALVPGGIRIGS  444 (520)
Q Consensus       378 ~~~L~~~-G~~v~~~gt~~~~~~vd~~~~----------g~~~~~--~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~  444 (520)
                      .+.|.+. |+.+..+ ..+.+.|+++...          +.+.+.  +.++|++.||.+..+..++.  ...++++|+++
T Consensus       397 ~~~L~~~~g~~~~~~-~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~--~~g~~~iRis~  473 (500)
T 3tcm_A          397 EHAFNKLEGITCNEA-EGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQ--VPGTWHFRCTI  473 (500)
T ss_dssp             HHHHHTSTTEECCCC-CBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCC--CTTCCBEEEES
T ss_pred             HHHHhcCCCcEEecC-CeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCC--CCCCCEEEEEE
Confidence            9999885 8887654 2345555444311          222222  45788899999954332221  12456899987


Q ss_pred             CCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          445 PAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       445 ~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      .      .++++++++++.|.++++..
T Consensus       474 ~------~~~e~i~~~i~~l~~~~~~~  494 (500)
T 3tcm_A          474 L------PQEDKIPAVISRFTVFHEAF  494 (500)
T ss_dssp             C------SCTTTHHHHHHHHHHHHHHH
T ss_pred             C------CCHHHHHHHHHHHHHHHHHH
Confidence            5      34689999999998887643

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.90  E-value=7.5e-23  Score=214.33  Aligned_cols=357  Identities=13%  Similarity=0.059  Sum_probs=221.4

Q ss_pred             ccccChHHHHHHHHHHHHhhccceEecCCCC-----ChHHHHHHHh--hhhhcc-CCCCCCCCCCCCcchhHHHHHHHHH
Q 010008           74 LGEADPEVCEIITKEKERQFKSLELIASENF-----TSRAVMEAVG--SCLTNK-YSEGLPGKRYYGGNEYIDELETLCQ  145 (520)
Q Consensus        74 l~~~d~~~~~~~~~e~~~~~~~i~Liasen~-----~~~~V~ea~~--s~l~~~-y~~G~p~~ryy~g~~~~d~lE~~a~  145 (520)
                      +....+.++..+.+-.. ....|+|..+...     +++.+++++.  ..+.+. ...+||+     ......+++    
T Consensus         7 ~~~~~~~~~~~~~~~~~-~~~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~-----~~~g~~~lr----   76 (423)
T 3ez1_A            7 SRPALDLARQAYEAFKA-RGLNLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPG-----GVAGLPSAR----   76 (423)
T ss_dssp             CHHHHHHHHHHHHHHHH-HTCCEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCS-----CTTCCHHHH----
T ss_pred             HHHHHHHHHHHHHHhhc-CCceEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCC-----CCCChHHHH----
Confidence            44555666665544322 3466888776543     4567888875  443311 1123421     112123444    


Q ss_pred             HHHHHHcCCCCCCCceeeecCChH-HHHH--HHHHhhCC--C---------CCEEEEcCCCCCccccccccccccccccc
Q 010008          146 KRALAAFNLDENKWGVNVQPLSGS-PANF--EVYTAILK--P---------HDRIMGLDLPHGGHLSHGFMTPKRRVSGT  211 (520)
Q Consensus       146 ~~~~~lfg~~~~~~~~~V~~~sGs-~A~~--~~l~all~--p---------GD~Vl~~~~~~~ghls~g~~~~~~~v~~~  211 (520)
                      +.++++++++++    +|.+++|+ +++.  +++.++++  |         ||+|++.+|.|.++..        .+...
T Consensus        77 ~~ia~~~~~~~~----~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~--------~~~~~  144 (423)
T 3ez1_A           77 ALFAGYLDVKAE----NVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFL--------LLQTL  144 (423)
T ss_dssp             HHHHHHTTSCGG----GEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHH--------HHHHH
T ss_pred             HHHHHHhCCChh----hEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHH--------HHHHc
Confidence            677888999876    45557776 7887  78888888  8         5999999998755421        23344


Q ss_pred             cceEEEEEcccCCCCCCCCHHHHHHHhh-hcCCcEEEEc-CCCCCC--CCCHH---HHHHHH-HHhCCEEEEechhhccc
Q 010008          212 SIYFESMPYRLDESTGLVDYDMLEKTAI-LFRPKLIIAG-ASAYPR--DFDYP---RMRQIA-DAVGALLMMDMAHISGL  283 (520)
Q Consensus       212 g~~~~~v~~~~d~~~~~iD~d~le~~i~-~~~pklIi~~-~s~~p~--~~d~~---~i~~ia-~~~g~~li~D~Ah~~gl  283 (520)
                      |.  +++.++++.+  .+|+++|+++++ ..++|+|++. .++||+  .++.+   +|+++| +++|+++|+|++|....
T Consensus       145 g~--~~~~v~~~~~--g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~  220 (423)
T 3ez1_A          145 GF--ELLTVDMQSD--GPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHH  220 (423)
T ss_dssp             TC--EEEEEEEETT--EECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCB
T ss_pred             CC--EEEeccCCCC--CCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhh
Confidence            54  6667777643  499999999995 2378998765 678886  66665   788888 89999999999965322


Q ss_pred             ccc-cccC--CC--------CCcccEEEeccCcc-cCCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHH
Q 010008          284 VAA-SVVA--DP--------FKYCDVVTTTTHKS-LRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGL  351 (520)
Q Consensus       284 i~~-~~~~--~p--------~~~aDiv~~S~hK~-l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaal  351 (520)
                      ... +..+  +.        ....++++.|+||+ ++|+|.|+++.++      ++.+.+.........+.+...+. +.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-a~  293 (423)
T 3ez1_A          221 LVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSE------DNIRWLSKYLGAQSIGPNKVEQA-RH  293 (423)
T ss_dssp             CCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECH------HHHHHHHHHHHHSCSCCCHHHHH-HH
T ss_pred             cCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCH------HHHHHHHHHHhhhccCCCHHHHH-HH
Confidence            222 1111  11        11345889999995 5789999999987      66666544322222233333333 33


Q ss_pred             HHHHHHhcC---chhHHHHHHHHHHHHHHHHHHHH----CC--CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeE
Q 010008          352 AVCLKHAQS---PEFKVYQNKVVSNCRALASRLVE----LG--YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASIT  422 (520)
Q Consensus       352 a~al~~~~~---~~~~~~~~~i~~na~~l~~~L~~----~G--~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~  422 (520)
                      ..+++....   ...++..+.+.++++.+.+.|.+    .|  +.+..+ ....++++++...  +.+.+.+.|.+.||.
T Consensus       294 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p-~~g~~~~~~~~~~--~~~~~~~~l~~~gv~  370 (423)
T 3ez1_A          294 VKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLP-KGGYFISLDTAEP--VADRVVKLAEAAGVS  370 (423)
T ss_dssp             HHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCC-SBSSCEEEEESSS--CHHHHHHHHHHTTEE
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCC-CccEEEEEECCCC--cHHHHHHHHHHCCcE
Confidence            334543111   12244445555666666666654    44  555443 2355678887542  678888999999999


Q ss_pred             EcC-CCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          423 LNK-NSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       423 v~~-~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      +.. +...+......+++|||++...     +++++++.++.|.++++..
T Consensus       371 v~~~g~~~~~~~~~~~~~iRis~~~~-----~~~~i~~~~~~l~~~l~~~  415 (423)
T 3ez1_A          371 LTPAGATYPAGQDPHNRNLRLAPTRP-----PVEEVRTAMQVVAACIRLA  415 (423)
T ss_dssp             CCCTTTTSSTTCCSSSCEEEECCSSS-----CHHHHHHHHHHHHHHHHHH
T ss_pred             EecCcccccCCCCCCCCeEEEEcCCC-----CHHHHHHHHHHHHHHHHHH
Confidence            954 2111111112467899997533     4899999999999988754

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.90  E-value=5.7e-23  Score=215.58  Aligned_cols=358  Identities=15%  Similarity=0.051  Sum_probs=216.5

Q ss_pred             hhhccccChHHHHHHHHHHHHhhccceEecCCCC-----ChHHHHHHHhhhhh--cc-CCCCCCCCCCCCcchhHHHHHH
Q 010008           71 DYSLGEADPEVCEIITKEKERQFKSLELIASENF-----TSRAVMEAVGSCLT--NK-YSEGLPGKRYYGGNEYIDELET  142 (520)
Q Consensus        71 ~~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~-----~~~~V~ea~~s~l~--~~-y~~G~p~~ryy~g~~~~d~lE~  142 (520)
                      ...+......++....+... +...|+|..+++.     +++.+++++...+.  .. ...+|+..   .|   ..+++ 
T Consensus        11 ~~~l~~~~~~~~~~~~~l~~-~~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~---~G---~~~lr-   82 (422)
T 3d6k_A           11 AARLAQVREEVTAKYAELKA-KNLSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGL---LG---IADIR-   82 (422)
T ss_dssp             -------CHHHHHHHHHHHH-TTCCEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCS---SC---CHHHH-
T ss_pred             HHHHHhhHHHHHHHHHHHhc-cCCeEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCC---CC---CHHHH-
Confidence            34455566667766544332 3456888888873     44567777654421  11 12244431   12   23344 


Q ss_pred             HHHHHHHHHcCCCCCCCceeeecCChH-HHH--HHHHHhhCCC------------CCEEEEcCCCCCccccccccccccc
Q 010008          143 LCQKRALAAFNLDENKWGVNVQPLSGS-PAN--FEVYTAILKP------------HDRIMGLDLPHGGHLSHGFMTPKRR  207 (520)
Q Consensus       143 ~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~--~~~l~all~p------------GD~Vl~~~~~~~ghls~g~~~~~~~  207 (520)
                         +.++++++++++    +|.+++|+ +++  .+++.++.++            ||+|++.+|.|.++..        .
T Consensus        83 ---~~ia~~~~~~~~----~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~--------~  147 (422)
T 3d6k_A           83 ---ELWAEALGLPAD----LVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFT--------I  147 (422)
T ss_dssp             ---HHHHHHHTCCGG----GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHH--------H
T ss_pred             ---HHHHHHhCCChh----HEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHH--------H
Confidence               567777898876    45567777 676  4566777666            3589999998765421        2


Q ss_pred             cccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEE-EcCCCCCC--CCCHH---HHHHHHH-HhCCEEEEechhh
Q 010008          208 VSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII-AGASAYPR--DFDYP---RMRQIAD-AVGALLMMDMAHI  280 (520)
Q Consensus       208 v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi-~~~s~~p~--~~d~~---~i~~ia~-~~g~~li~D~Ah~  280 (520)
                      +...|.  +++.+++++ ++ +|++++++++++.++|+|+ ++.++||+  .++.+   +|.++|+ ++|++||+|++|.
T Consensus       148 ~~~~g~--~~~~v~~~~-~g-~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~  223 (422)
T 3d6k_A          148 TEHFGF--EMINVPMTD-EG-PDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYA  223 (422)
T ss_dssp             HHHHTC--EEEEEEEET-TE-ECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTT
T ss_pred             HHHcCC--EEEecCCCC-CC-CCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCcc
Confidence            334454  666777764 33 9999999999755789888 56788886  66665   6777777 8999999999976


Q ss_pred             c-ccccccccCCCC---------CcccEEEeccCcc-cCCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHH
Q 010008          281 S-GLVAASVVADPF---------KYCDVVTTTTHKS-LRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIG  349 (520)
Q Consensus       281 ~-gli~~~~~~~p~---------~~aDiv~~S~hK~-l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~ia  349 (520)
                      . ++...+....++         ...++++.|+||+ ++|+|.||+++++      ++.+.+.........+.+.. ..+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~GlriG~~~~~~------~l~~~l~~~~~~~~~~~~~~-~q~  296 (422)
T 3d6k_A          224 LHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGSGVSFFASSK------ENIEWYASHANVRGIGPNKL-NQL  296 (422)
T ss_dssp             TCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTTSSCEEEECCH------HHHHHHHHHHHHHCSCCCHH-HHH
T ss_pred             ccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCcccceEEEEeCH------HHHHHHHHHHHhhcCCCCHH-HHH
Confidence            3 333222111122         1346889999996 4778999999987      66666554322222233333 333


Q ss_pred             HHHHHHHHhc--CchhHHHHHHHHHHHHHHHHHHHH----CC-CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeE
Q 010008          350 GLAVCLKHAQ--SPEFKVYQNKVVSNCRALASRLVE----LG-YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASIT  422 (520)
Q Consensus       350 ala~al~~~~--~~~~~~~~~~i~~na~~l~~~L~~----~G-~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~  422 (520)
                      +...+|+...  ....++..+.+.++++.+.+.|.+    .| +.+..+ ...+++|+++...  +.+.+.+.|.++||.
T Consensus       297 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p-~~g~~~~~~~~~~--~~~~~~~~l~~~gV~  373 (422)
T 3d6k_A          297 AHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSP-TGGYFISVDVVPG--TASRVVELAKEAGIA  373 (422)
T ss_dssp             HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCC-SBSSCEEEEESTT--CHHHHHHHHHHTTEE
T ss_pred             HHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCC-CcceEEEEECCCC--CHHHHHHHHHHCCeE
Confidence            3333443200  012344456666677777777765    23 555443 2356678888532  567788899999999


Q ss_pred             EcCC-CCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          423 LNKN-SVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       423 v~~~-~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +..+ ...+.......+++||++..     .++++++++++.|.++++.
T Consensus       374 v~~~g~~f~~~~~~~~~~iRis~~~-----~~~e~i~~~~~~l~~~l~~  417 (422)
T 3d6k_A          374 LTGAGSSFPLHNDPNNENIRLAPSL-----PPVAELEVAMDGFATCVLM  417 (422)
T ss_dssp             CCCTTTTSGGGCCTTSCEEEECCSS-----SCHHHHHHHHHHHHHHHHH
T ss_pred             EEcCccccCCCCCCCCCeEEEecCC-----CCHHHHHHHHHHHHHHHHH
Confidence            9542 10100000135789999764     2489999999999988764

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.90  E-value=7.8e-23  Score=229.15  Aligned_cols=298  Identities=14%  Similarity=0.080  Sum_probs=208.6

Q ss_pred             HHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEccc
Q 010008          144 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL  222 (520)
Q Consensus       144 a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~  222 (520)
                      +++.+++++|.+.     .+.+++|+ +||.+++.++++|||+|++..+.|.+.+.        .+...|.  +++.++.
T Consensus       210 ~ee~la~l~G~d~-----~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~--------~~~~~G~--~~v~v~~  274 (755)
T 2vyc_A          210 SEKYAARVFGADR-----SWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQ--------GLMLTGA--KPVYMVP  274 (755)
T ss_dssp             HHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH--------HHHHHCC--EEEEECC
T ss_pred             HHHHHHHHhCCCc-----eEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHH--------HHHHcCC--EEEEEeC
Confidence            4478899999974     24457887 89999999999999999999988755431        2334565  5556555


Q ss_pred             CCCC----CCC-----CHHHHHHHhhhc-CC--------cEEEEcCCCCCC-CCCHHHHHHHHHHhCCEEEEechhhccc
Q 010008          223 DEST----GLV-----DYDMLEKTAILF-RP--------KLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGL  283 (520)
Q Consensus       223 d~~~----~~i-----D~d~le~~i~~~-~p--------klIi~~~s~~p~-~~d~~~i~~ia~~~g~~li~D~Ah~~gl  283 (520)
                      +.++    +.+     |+++|++++++. ++        ++++++++++.+ ..|+++|.++|+++|++|++|+||+.++
T Consensus       275 ~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~pn~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~  354 (755)
T 2vyc_A          275 SRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYA  354 (755)
T ss_dssp             CBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESSCTTSEEECHHHHHHHHTTTCSEEEEECTTCTTG
T ss_pred             CCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECCCCCceecCHHHHHHHHHHcCCEEEEECcCchhc
Confidence            4222    235     999999998752 23        488887776544 7899999999999999999999997654


Q ss_pred             cccccc--CCCCCc--ccE------EEeccCcccCCCC-ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHH
Q 010008          284 VAASVV--ADPFKY--CDV------VTTTTHKSLRGPR-GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLA  352 (520)
Q Consensus       284 i~~~~~--~~p~~~--aDi------v~~S~hK~l~Gpr-gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala  352 (520)
                      ...+..  ..++.+  +|+      +++|+||+|+||+ +|+++++++.... + ..+++........++|+...++++.
T Consensus       355 ~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i-~-~~~~~~~~~~~~s~sp~~~~iaal~  432 (755)
T 2vyc_A          355 RFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAI-N-FSRFNQAYMMHATTSPLYAICASND  432 (755)
T ss_dssp             GGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCC-C-HHHHHHHHHHTSCSSCCHHHHHHHH
T ss_pred             ccCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCccccc-C-HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            433221  223234  676      9999999999998 4788887630000 0 1122222112235788999999999


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CC---------CEEecCC------------------------------
Q 010008          353 VCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LG---------YKLVSGG------------------------------  392 (520)
Q Consensus       353 ~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G---------~~v~~~g------------------------------  392 (520)
                      +|++.+...+.+++.++..++++.+++.|++ .|         ++++.+.                              
T Consensus       433 aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (755)
T 2vyc_A          433 VAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVM  512 (755)
T ss_dssp             HHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGGTBC
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhccchhhhhcc
Confidence            9998876554677889999999999999977 35         5554321                              


Q ss_pred             -------------C-----CCeeEEEEecCC---------CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccC
Q 010008          393 -------------S-----DNHLVLVDLRPM---------GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSP  445 (520)
Q Consensus       393 -------------t-----~~~~~~vd~~~~---------g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~  445 (520)
                                   .     |...+.+++...         |+++..+.+.|+++||.+.+.         ..+.+|+.++
T Consensus       513 ~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~---------~~~~v~~~~~  583 (755)
T 2vyc_A          513 HPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRT---------TDFQIMFLFS  583 (755)
T ss_dssp             CTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEE---------CSSEEEEECC
T ss_pred             CcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeec---------CCCeEEEEEC
Confidence                         1     223445555433         345589999999999998652         2567898655


Q ss_pred             CccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          446 AMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       446 ~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                          .|.++++++++++.|.++.+..
T Consensus       584 ----~g~t~~~~~~l~~al~~~~~~~  605 (755)
T 2vyc_A          584 ----MGVTRGKWGTLVNTLCSFKRHY  605 (755)
T ss_dssp             ----TTCCTTTTHHHHHHHHHHHHHH
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHhh
Confidence                4556899999999998876543

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.90  E-value=1.7e-22  Score=205.70  Aligned_cols=322  Identities=12%  Similarity=0.081  Sum_probs=207.9

Q ss_pred             cceEecCCC-CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHH
Q 010008           95 SLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  173 (520)
Q Consensus        95 ~i~Liasen-~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~  173 (520)
                      .|.|..+++ .+++.|++++...+.+ |..+      ++..    .+.+.+++++++++|++++++   +...+|++|+.
T Consensus        15 ~i~l~~~~~~~~~~~v~~a~~~~~~~-~~~~------~g~~----~~~~~~~~~l~~~~g~~~~~v---~~~~g~t~a~~   80 (359)
T 1svv_A           15 PYSFVNDYSVGMHPKILDLMARDNMT-QHAG------YGQD----SHCAKAARLIGELLERPDADV---HFISGGTQTNL   80 (359)
T ss_dssp             CEECSCSCSSCCCHHHHHHHHHHTTC-CCCS------TTCS----HHHHHHHHHHHHHHTCTTSEE---EEESCHHHHHH
T ss_pred             eEEecCCCcCCCCHHHHHHHHHHHhh-cccc------cccc----HHHHHHHHHHHHHhCCCCccE---EEeCCchHHHH
Confidence            466655443 5789999999987752 3221      1112    333445588999999877521   33345669999


Q ss_pred             HHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc------CCcEEE
Q 010008          174 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF------RPKLII  247 (520)
Q Consensus       174 ~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~------~pklIi  247 (520)
                      .++.++++|||+|++.++.|.++....      .+...|.  +++.++.+  ++.+|+++|++.+++.      ++++|+
T Consensus        81 ~~~~~~~~~gd~vl~~~~~~~~~~~~~------~~~~~g~--~~~~v~~~--~~~~d~~~l~~~l~~~~~~~~~~~~~v~  150 (359)
T 1svv_A           81 IACSLALRPWEAVIATQLGHISTHETG------AIEATGH--KVVTAPCP--DGKLRVADIESALHENRSEHMVIPKLVY  150 (359)
T ss_dssp             HHHHHHCCTTEEEEEETTSHHHHSSTT------HHHHTTC--CEEEECCT--TSCCCHHHHHHHHHHSCSTTSCEEEEEE
T ss_pred             HHHHHHhCCCCEEEEcccchHHHHHHH------HHhcCCC--eeEEEeCC--CCeecHHHHHHHHHHHHhccCCCceEEE
Confidence            999999999999999999876553210      1233454  56666654  5789999999999873      289998


Q ss_pred             EcCCCCCC-CCC---HHHHHHHHHHhCCEEEEechh---hcccccccccCCCC---CcccEEEeccCcccCCCCc-eEEE
Q 010008          248 AGASAYPR-DFD---YPRMRQIADAVGALLMMDMAH---ISGLVAASVVADPF---KYCDVVTTTTHKSLRGPRG-GMIF  316 (520)
Q Consensus       248 ~~~s~~p~-~~d---~~~i~~ia~~~g~~li~D~Ah---~~gli~~~~~~~p~---~~aDiv~~S~hK~l~Gprg-G~I~  316 (520)
                      ++.+++.+ ..+   +++|+++|+++|+++|+|++|   ..|...  .....+   ..+|+++.|+||+ .+|.+ |+++
T Consensus       151 ~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~--~~~~~~~~~~~~d~~~~s~~K~-g~~~~~g~l~  227 (359)
T 1svv_A          151 ISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPV--NDLTLADIARLTDMFYIGATKA-GGMFGEALII  227 (359)
T ss_dssp             EESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTT--CCCCHHHHHHHCSEEEEECTTT-TCSSCEEEEE
T ss_pred             EEcCCCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCC--cchhhhhhhhcCCEEEEecccC-CCCCceEEEE
Confidence            88774222 666   889999999999999999997   333221  111111   1478999999997 56766 8998


Q ss_pred             eeCCCcchhhHHHhhcccC-CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCC
Q 010008          317 FKKDPVLGVELESAINNAV-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDN  395 (520)
Q Consensus       317 ~~~~~~~~~~l~~~i~~~~-~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~  395 (520)
                      +++      ++.+.+.... ..+...+......++++.+   +...++++..+++.++++.+.+.|+..|+++..+. ..
T Consensus       228 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~  297 (359)
T 1svv_A          228 LND------ALKPNARHLIKQRGALMAKGWLLGIQFEVL---MKDNLFFELGAHSNKMAAILKAGLEACGIRLAWPS-AS  297 (359)
T ss_dssp             CSG------GGCTTHHHHHHHTTCCCTTTHHHHHHHHHH---TSTTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCC-SS
T ss_pred             Ecc------cHHHHHHHHHhcCCcccccchhhHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHhccCCeEEccCC-cc
Confidence            877      4444443211 0111111122222333222   22334577888899999999999955788876442 34


Q ss_pred             eeEEEEecCCCCCHHHHHHHHhhc-CeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          396 HLVLVDLRPMGIDGARVEKILDMA-SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       396 ~~~~vd~~~~g~~~~~~~~~L~~~-gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +++++++.      .++.+.|.+. ||.+-    +..  +..+++|||+.+..    .+++|++++++.|+++++
T Consensus       298 ~~~~~~~~------~~~~~~l~~~~gi~v~----~~~--~~~~~~iRi~~~~~----~~~~~i~~~~~~l~~~~~  356 (359)
T 1svv_A          298 NQLFPILE------NTMIAELNNDFDMYTV----EPL--KDGTCIMRLCTSWA----TEEKECHRFVEVLKRLVA  356 (359)
T ss_dssp             SEECBEEE------HHHHHHHTTTEECEEE----EEE--TTTEEEEEEECCTT----CCHHHHHHHHHHHHHC--
T ss_pred             ceEEEEcC------HHHHHHHHHhcCEEEE----ecc--cCCCceEEEEccCc----CCHHHHHHHHHHHHHHHh
Confidence            55555553      3556666666 99981    110  11356899986543    358999999999988764

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.90  E-value=6.9e-23  Score=209.41  Aligned_cols=331  Identities=11%  Similarity=0.049  Sum_probs=206.2

Q ss_pred             cceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHH
Q 010008           95 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE  174 (520)
Q Consensus        95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~  174 (520)
                      .-.|..+.++..+.+++++...+.     +..+..+|+..+...+++    +++++++|.+.     .|.+++|++|+..
T Consensus        12 ~~~l~~~~~p~~~~~~~~~~~~~~-----~~~~~~~y~~~~~~~~l~----~~la~~~~~~~-----~i~~~~G~~a~~~   77 (357)
T 3lws_A           12 TTGQISGHGKRNVGVLKTAFAAVA-----DEMASDQYGTGAIIEPFE----QKFADVLGMDD-----AVFFPSGTMAQQV   77 (357)
T ss_dssp             CSEESSBSSCCBHHHHHHHHTTSC-----TTCBCEETTEETTHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHH
T ss_pred             hcccccCCCCCCHHHHHHHHHHhh-----cccCcccccCChHHHHHH----HHHHHHhCCCc-----EEEecCcHHHHHH
Confidence            344666777776766666543221     111223455555566666    67888999864     3556899999999


Q ss_pred             HHHhhCCCCC--EEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 010008          175 VYTAILKPHD--RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA  252 (520)
Q Consensus       175 ~l~all~pGD--~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~  252 (520)
                      ++.++++|||  .|++.++.|...+..+     ......|.  +++.++.  +++.+|+++|+++.   ++++|+++.++
T Consensus        78 al~~~~~~gd~~~vi~~~~~~~~~~~~~-----~~~~~~g~--~~~~v~~--~~~~~d~~~l~~~~---~~~~v~~~~p~  145 (357)
T 3lws_A           78 ALRIWSDETDNRTVAYHPLCHLEIHEQD-----GLKELHPI--ETILVGA--ADRLMTLDEIKALP---DIACLLLELPQ  145 (357)
T ss_dssp             HHHHHHHHHTCCEEEECTTCHHHHSSTT-----HHHHHSSC--EEEECSC--TTSCCCHHHHHTCC---SCSEEEEESSB
T ss_pred             HHHHHhhcCCCcEEEecccceeeeeccc-----hhhhccCc--EEEEecC--CCCCcCHHHHhcCc---CcceEEEEccc
Confidence            9999999999  6666554432221100     01122343  6666553  46789999999873   48999999888


Q ss_pred             CCC---CC---CHHHHHHHHHHhCCEEEEechhhcccc-cccccCCCC-CcccEEEeccCcccCCCCceEEEeeCCCcch
Q 010008          253 YPR---DF---DYPRMRQIADAVGALLMMDMAHISGLV-AASVVADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLG  324 (520)
Q Consensus       253 ~p~---~~---d~~~i~~ia~~~g~~li~D~Ah~~gli-~~~~~~~p~-~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~  324 (520)
                      ||+   .+   ++++|+++|+++|++||+|++|..+.. ..+.....+ .+.|++++|+||++.||.||+++.++     
T Consensus       146 np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~~~~-----  220 (357)
T 3lws_A          146 REIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAGAILAGPA-----  220 (357)
T ss_dssp             GGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEEEESSSTTCCSSCEEEEECH-----
T ss_pred             ccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEEEeccccCCCCceEEEEcCH-----
Confidence            753   44   488999999999999999999763221 111111111 24788999999999899999999887     


Q ss_pred             hhHHHhhcccC--CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCCeeEEEE
Q 010008          325 VELESAINNAV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVLVD  401 (520)
Q Consensus       325 ~~l~~~i~~~~--~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~~~~vd  401 (520)
                       ++.+.+....  +.+.....+....+++ .+++...     +..++..++++.+.+.|.+. |+++.......+++|++
T Consensus       221 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~-----~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~  293 (357)
T 3lws_A          221 -AFCQTARIWKRRYGGDLISLYPYIVSAD-YYYELRK-----DRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLH  293 (357)
T ss_dssp             -HHHHHHHHHHHHTTCCCSCCHHHHHHHH-HHHHHHT-----TCHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEE
T ss_pred             -HHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHHH-----HHHHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEE
Confidence             6666554321  1111111222222222 3455422     22345677788999999885 88874322345677888


Q ss_pred             ecCCC-CCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          402 LRPMG-IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       402 ~~~~g-~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      +...+ .+..++.+.|.++||.+..+..++   + ..+.+|+++.... ...+++++++..+.|.+++
T Consensus       294 ~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~---~-~~~~~r~~i~~~~-~~~~~~~l~~al~~l~~al  356 (357)
T 3lws_A          294 FDGQAADISPKLEQVQEETGLGFVGYLVDK---D-GYCSTEISVGDAY-GELDQQTRDAGFARLRQAF  356 (357)
T ss_dssp             EESCHHHHHHHHHHHHHHHCEESCSCCEEC---S-SEEEEEEEBCTTG-GGSCHHHHHHHHHHHHHHC
T ss_pred             ecCChHHHHHHHHHHHHhcCeEEecccccC---C-CceEEEEEecchh-hhcCHHHHHHHHHHHHHhc
Confidence            76421 124667888999999995432211   1 2347898654221 2246788888887776654

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.90  E-value=1.3e-22  Score=217.76  Aligned_cols=329  Identities=11%  Similarity=0.023  Sum_probs=209.3

Q ss_pred             CChHHHHHHHhhhhhccC---CCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC-C--CCCCCceeeecCChH-HHHHHHH
Q 010008          104 FTSRAVMEAVGSCLTNKY---SEGLPGKRYYGGNEYIDELETLCQKRALAAFN-L--DENKWGVNVQPLSGS-PANFEVY  176 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y---~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg-~--~~~~~~~~V~~~sGs-~A~~~~l  176 (520)
                      ..|..+.+++...+.+..   ..+|+..   .|   ...+++...+++.+.+| +  +++    +|.+++|+ +|+..++
T Consensus       101 ~~P~~~~~~~~~~l~~~~~~~~~~Y~~~---~G---~~~lr~~ia~~~~~~~gG~~~~~~----~i~~t~G~~~ai~~~~  170 (498)
T 3ihj_A          101 SFPEDAKKRARRILQACGGNSLGSYSAS---QG---VNCIREDVAAYITRRDGGVPADPD----NIYLTTGASDGISTIL  170 (498)
T ss_dssp             SSCHHHHHHHHHHHHHC----------C---CS---CHHHHHHHHHHHHHHTTTCCCCGG----GEEEESSHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhccCCCCCCCCCC---CC---HHHHHHHHHHHHHHhcCCCCCCcc----cEEEcCCHHHHHHHHH
Confidence            345666666665555321   1233321   12   33555556677888875 5  444    45567776 8999999


Q ss_pred             HhhCCCCC----EEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhc----CCcEEE
Q 010008          177 TAILKPHD----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILF----RPKLII  247 (520)
Q Consensus       177 ~all~pGD----~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~----~pklIi  247 (520)
                      .+++++||    +|++++|.|.++.        ..+...|.  +++.|+++++ ++.+|+++|++++++.    ++|+|+
T Consensus       171 ~~l~~~gd~~~d~Vlv~~p~y~~~~--------~~~~~~g~--~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~  240 (498)
T 3ihj_A          171 KILVSGGGKSRTGVMIPIPQYPLYS--------AVISELDA--IQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLC  240 (498)
T ss_dssp             HHHCCCCGGGSEEEEEEESCCTHHH--------HHHHHTTC--EEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEE
T ss_pred             HHHcCCCCCCCCEEEEeCCCchhHH--------HHHHHcCC--EEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEE
Confidence            99999986    9999999876542        12344555  6777777754 4689999999999874    589999


Q ss_pred             EcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccc-cCCCCCc------------c-cEEEeccCccc-
Q 010008          248 AGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV-VADPFKY------------C-DVVTTTTHKSL-  307 (520)
Q Consensus       248 ~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~~p~~~------------a-Div~~S~hK~l-  307 (520)
                      +..++||+  ..   ++++|.++|+++|++||+|++|. .+++.+. ...++..            . -+++.|+||++ 
T Consensus       241 l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  319 (498)
T 3ihj_A          241 IINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQ-DNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYM  319 (498)
T ss_dssp             EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTT
T ss_pred             EECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCcc-ccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccc
Confidence            88999987  44   46779999999999999999964 4443321 1112210            1 15778999998 


Q ss_pred             --CCCCceEEEe---eCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHH----------hcCchhHHHHHHHHH
Q 010008          308 --RGPRGGMIFF---KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH----------AQSPEFKVYQNKVVS  372 (520)
Q Consensus       308 --~GprgG~I~~---~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~----------~~~~~~~~~~~~i~~  372 (520)
                        +|.|+||++.   ++      ++.+.+......  ...++....++++.+++.          .. .+.....+++.+
T Consensus       320 G~~G~R~G~~~~~~~~~------~l~~~l~~~~~~--~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~-~~~~~~~~~l~~  390 (498)
T 3ihj_A          320 GECGYRGGYMEVINLHP------EIKGQLVKLLSV--RLCPPVSGQAAMDIVVNPPVAGEESFEQFS-REKESVLGNLAK  390 (498)
T ss_dssp             CCSSSCCEEEEEESCCH------HHHHHHHHHHHH--SCCCCHHHHHHHHHHTCCCCTTSTTHHHHH-HHHHHHHHHHHH
T ss_pred             cCcccceEEEEEecCCH------HHHHHHHHHHhc--cCCCCHHHHHHHHHHhcCCccCcccHHHHH-HHHHHHHHHHHH
Confidence              5899999984   43      566555433211  122233333444433321          00 112345577788


Q ss_pred             HHHHHHHHHHHC-CCEEecCCCCCeeEEEEecC----------CCCCHHH--HHHHHhhcCeEEcCCCCCCCCCCCCCCE
Q 010008          373 NCRALASRLVEL-GYKLVSGGSDNHLVLVDLRP----------MGIDGAR--VEKILDMASITLNKNSVPGDKSALVPGG  439 (520)
Q Consensus       373 na~~l~~~L~~~-G~~v~~~gt~~~~~~vd~~~----------~g~~~~~--~~~~L~~~gI~v~~~~~Pg~~~~~~~~g  439 (520)
                      +++.+.+.|.+. |+.+..+ ..+.+.|+++..          .+++.++  +.++|++.||.+..+..++.  +..+++
T Consensus       391 ~~~~l~~~L~~~~g~~~~~p-~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~--~~~~~~  467 (498)
T 3ihj_A          391 KAKLTEDLFNQVPGIHCNPL-QGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQ--REGTYH  467 (498)
T ss_dssp             HHHHHHHHHHTSTTEECCCC-CBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCC--CTTCCB
T ss_pred             HHHHHHHHHhcCCCcEecCC-CeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCC--CCCCCE
Confidence            899999999885 8887654 234555655531          2445544  57788899999854432221  124568


Q ss_pred             EEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          440 IRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       440 iRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      +|+++.      .++++++++++.|.++++..
T Consensus       468 ~Ris~~------~~~e~l~~~i~~L~~~~~~~  493 (498)
T 3ihj_A          468 FRMTIL------PPVEKLKTVLQKVKDFHINF  493 (498)
T ss_dssp             EEEECC------SCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeC------CCHHHHHHHHHHHHHHHHHH
Confidence            999872      45899999999998887643

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.90  E-value=9.9e-23  Score=212.56  Aligned_cols=344  Identities=10%  Similarity=0.009  Sum_probs=209.8

Q ss_pred             hccceEecCCCCCh----HHHHHHHhhhhhccC----CCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCcee
Q 010008           93 FKSLELIASENFTS----RAVMEAVGSCLTNKY----SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVN  162 (520)
Q Consensus        93 ~~~i~Liasen~~~----~~V~ea~~s~l~~~y----~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~  162 (520)
                      .+.|+|..+.+...    +.+.+++...+.+..    ..+|+.      .....++++...+++.+.+|..  ++    +
T Consensus        31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~------~~g~~~lr~~ia~~~~~~~g~~~~~~----~  100 (417)
T 3g7q_A           31 PGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDG------PQGKTALLNALAVLLRETLGWDIEPQ----N  100 (417)
T ss_dssp             -CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTC------TTSHHHHHHHHHHHHHHHHCCCCCGG----G
T ss_pred             CCceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCC------CCCcHHHHHHHHHHHHHHhCCCCCcc----c
Confidence            36688877765442    456666666554321    013332      2224566666666777767654  44    4


Q ss_pred             eecCChH-HHHHHHHHhhCCCCC-----EEEEc-CCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHH
Q 010008          163 VQPLSGS-PANFEVYTAILKPHD-----RIMGL-DLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLE  235 (520)
Q Consensus       163 V~~~sGs-~A~~~~l~all~pGD-----~Vl~~-~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le  235 (520)
                      |.+++|+ +|+.+++.++++|||     +|+++ +|.|.++......    .-.+.+....+..++.+..++.+|+++++
T Consensus       101 i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~~l~  176 (417)
T 3g7q_A          101 IALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLE----DDLFVSARPNIELLPEGQFKYHVDFEHLH  176 (417)
T ss_dssp             EEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC---------CCEEECCCEEEEEGGGEEEEECCGGGCC
T ss_pred             EEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccc----hhhhccccCcccccCCcccccccCHHHhc
Confidence            5556666 999999999999998     89987 8877554321100    00111222234444332113568999887


Q ss_pred             HHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhccc---ccccccCCCCCcccEEEeccCccc
Q 010008          236 KTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGL---VAASVVADPFKYCDVVTTTTHKSL  307 (520)
Q Consensus       236 ~~i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gl---i~~~~~~~p~~~aDiv~~S~hK~l  307 (520)
                        +++ ++++|+++.++||+  .++   +++|.++|+++|+++|+|++|....   ...+..+ .....++++.|+||++
T Consensus       177 --~~~-~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~  252 (417)
T 3g7q_A          177 --IGE-ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARP-LWNPNIILCMSLSKLG  252 (417)
T ss_dssp             --CCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCC-CCCTTEEEEEESGGGT
T ss_pred             --ccc-CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcccccccccccccc-CCCCCEEEEEechhcc
Confidence              555 78999999899887  566   8889999999999999999975321   1111111 0124578899999964


Q ss_pred             -CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhH----H-HHHHHHHHHHHHHHHH
Q 010008          308 -RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK----V-YQNKVVSNCRALASRL  381 (520)
Q Consensus       308 -~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~----~-~~~~i~~na~~l~~~L  381 (520)
                       +|.|.|++++++      ++.+.+.........+++...+. +.+..++.   .++.    + ..+++.++++.+.+.|
T Consensus       253 ~~G~r~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~l  322 (417)
T 3g7q_A          253 LPGSRCGIIIAND------KTITAIANMNGIISLAPGGMGPA-MMCEMIKR---NDLLRLSETVIKPFYYQRVQQTIAII  322 (417)
T ss_dssp             CTTSCCEEEECCH------HHHHHHHHHHHHHCCCCCSHHHH-HHHHHHHT---TCHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             CCCcceEEEEeCH------HHHHHHHHhhcceeeCCCcHHHH-HHHHHHcC---cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence             677889999977      66666543221111222223222 22333432   2222    1 4455677777888888


Q ss_pred             HHC----CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC--CCC--CCCEEEEccCCccccCCC
Q 010008          382 VEL----GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK--SAL--VPGGIRIGSPAMTTRGFS  453 (520)
Q Consensus       382 ~~~----G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~--~~~--~~~giRig~~~~tt~g~~  453 (520)
                      .+.    |+.+..+. .+.++|+++...+++..++.+.|.+.||.+..+...+..  ...  .++++||+...      +
T Consensus       323 ~~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~------~  395 (417)
T 3g7q_A          323 RRYLSEERCLIHKPE-GAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP------E  395 (417)
T ss_dssp             HHHCCTTTCEEECCC-BSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS------C
T ss_pred             HHhcccCCceeeCCC-cceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC------C
Confidence            762    57776542 356678888654678888888899999999653211110  000  14689999752      5


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010008          454 EKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       454 ~~d~~~la~~i~~~l~~~  471 (520)
                      ++++++.++.|.++++..
T Consensus       396 ~~~i~~~~~~l~~~l~~~  413 (417)
T 3g7q_A          396 PDKIEAGVKILAEEIERA  413 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            899999999999988643

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.90  E-value=4.2e-22  Score=210.79  Aligned_cols=330  Identities=17%  Similarity=0.177  Sum_probs=207.9

Q ss_pred             ceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHH
Q 010008           96 LELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  173 (520)
Q Consensus        96 i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~  173 (520)
                      +++..+.+  .+++.+.+++... .+          .|...+...+++    +.+++++|.+.     .+.+++|++|+.
T Consensus        45 lD~~~~~~~~~~~~~~~~a~~~~-~~----------~y~~~~~~~~l~----~~la~~~~~~~-----~~~~~~gt~a~~  104 (456)
T 2ez2_A           45 IDLLTDSGTNAMSDKQWAGMMMG-DE----------AYAGSENFYHLE----RTVQELFGFKH-----IVPTHQGRGAEN  104 (456)
T ss_dssp             EECSCSSSCCCCCHHHHHHHTTC-CC----------CSSSCHHHHHHH----HHHHHHHCCSE-----EEEESSHHHHHH
T ss_pred             eeeccccCCccCCHHHHHHhhcc-hh----------hcccChhHHHHH----HHHHHHhCCCc-----EEEeCCcHHHHH
Confidence            45555444  4578888888621 11          133344455555    67788888763     355678889999


Q ss_pred             HHHHhhCCCCCEEEEcCCCC-CccccccccccccccccccceEEEEEcccCC----C-----CCCCCHHHHHHHhhhcCC
Q 010008          174 EVYTAILKPHDRIMGLDLPH-GGHLSHGFMTPKRRVSGTSIYFESMPYRLDE----S-----TGLVDYDMLEKTAILFRP  243 (520)
Q Consensus       174 ~~l~all~pGD~Vl~~~~~~-~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~----~-----~~~iD~d~le~~i~~~~p  243 (520)
                      +++.++++|||  +++++.| +...        ..+...|.  +++.+++++    +     ++.+|+++|++++++ ++
T Consensus       105 ~al~~l~~~gd--i~~~~~~~~~~~--------~~~~~~G~--~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~-~t  171 (456)
T 2ez2_A          105 LLSQLAIKPGQ--YVAGNMYFTTTR--------YHQEKNGA--VFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDE-KG  171 (456)
T ss_dssp             HHHHHHCCTTC--EEEESSCCHHHH--------HHHHHTTC--EEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHH-HC
T ss_pred             HHHHHhCCCCC--EeccccccchhH--------HHHHHcCC--EEEEecccccccccccccccCCCCHHHHHHHHHh-cc
Confidence            99999999999  6666665 3211        12344565  666766652    2     267899999999987 44


Q ss_pred             ----cEEEEcCCCC-CC--CCC---HHHHHHHHHHhCCEEEEechhhcc---------cccccccCC-----CCCcccEE
Q 010008          244 ----KLIIAGASAY-PR--DFD---YPRMRQIADAVGALLMMDMAHISG---------LVAASVVAD-----PFKYCDVV  299 (520)
Q Consensus       244 ----klIi~~~s~~-p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~g---------li~~~~~~~-----p~~~aDiv  299 (520)
                          ++|++++++| |+  ..+   +++|+++|+++|++||+|++|..|         +...+....     ....+|++
T Consensus       172 ~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~  251 (456)
T 2ez2_A          172 AENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGC  251 (456)
T ss_dssp             GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEE
T ss_pred             ccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEE
Confidence                8888887776 64  555   999999999999999999998875         333332110     00247888


Q ss_pred             EeccCcccCCCCceEEEeeCCCcchhhHHHhhcccCC--CC--CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q 010008          300 TTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVF--PG--LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCR  375 (520)
Q Consensus       300 ~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i~~~~~--p~--~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~  375 (520)
                      ++|+||++..++||+++++++     ++.+.+.....  .+  ..++.+...+++++.++.+...   +++.++..++.+
T Consensus       252 ~~S~kk~~~~~~gG~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~---~~~~~~~~~~~~  323 (456)
T 2ez2_A          252 TMSGKKDCLVNIGGFLCMNDD-----EMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ---YEYIEHRVKQVR  323 (456)
T ss_dssp             EEETTTTTCCSSCEEEEESCH-----HHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC---HHHHHHHHHHHH
T ss_pred             EEeCcccCCCCceeEEEECCH-----HHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH---HHHHHHHHHHHH
Confidence            888999876567899998542     55554432110  01  1122233344443444332221   456677777888


Q ss_pred             HHHHHHHHCCCEEecCCCCCeeEEEEecC--CCCCHHHH-----HHHH-hhcCeEEcC-CC--CCCC-----CCCCCCCE
Q 010008          376 ALASRLVELGYKLVSGGSDNHLVLVDLRP--MGIDGARV-----EKIL-DMASITLNK-NS--VPGD-----KSALVPGG  439 (520)
Q Consensus       376 ~l~~~L~~~G~~v~~~gt~~~~~~vd~~~--~g~~~~~~-----~~~L-~~~gI~v~~-~~--~Pg~-----~~~~~~~g  439 (520)
                      .+.+.|.+.|++++.+ ...+++++++..  .+.+..++     .+.| +++||.+.. +.  .|.+     ......+.
T Consensus       324 ~l~~~L~~~g~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~  402 (456)
T 2ez2_A          324 YLGDKLKAAGVPIVEP-VGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLET  402 (456)
T ss_dssp             HHHHHHHHTTCCBCSS-CCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCE
T ss_pred             HHHHHHhcCCCccccC-CCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCe
Confidence            8999998878877654 235667777631  23343333     4555 788997522 11  1110     01112468


Q ss_pred             EEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          440 IRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       440 iRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      |||+.+..   ..+++|++++++.|+++++.
T Consensus       403 iRis~~~~---~~t~e~i~~~~~~l~~~l~~  430 (456)
T 2ez2_A          403 VRLTIPRR---VYTYAHMDVVADGIIKLYQH  430 (456)
T ss_dssp             EEEECCTT---TCCHHHHHHHHHHHHHHHHT
T ss_pred             EEEEeCCC---CCCHHHHHHHHHHHHHHHhh
Confidence            99997742   14589999999999998865

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.90  E-value=2.7e-22  Score=214.42  Aligned_cols=333  Identities=12%  Similarity=0.009  Sum_probs=215.0

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCC-------ceeeecCChHHHHHHHHH
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKW-------GVNVQPLSGSPANFEVYT  177 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~-------~~~V~~~sGs~A~~~~l~  177 (520)
                      ++..+.+.+.+.+.... .      .|...+...++|+.+.+++++++|.+.+.+       ..-|.+++||+||+.++.
T Consensus        91 ~~~~~~~~~~~~~n~~~-~------~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~  163 (481)
T 4e1o_A           91 WPSLLGDMLADAINCLG-F------TWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALL  163 (481)
T ss_dssp             HHHHHHHHHHHHHCCCC-S------STTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCccc-C------CcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHH
Confidence            34445555655553211 1      133456678999999999999999985321       113555778899998887


Q ss_pred             hhCC-------------------CCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHh
Q 010008          178 AILK-------------------PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTA  238 (520)
Q Consensus       178 all~-------------------pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i  238 (520)
                      +..+                   |++.|++.+..|.+..        +.+.+.|.  +++.++++ +++.+|+++|++++
T Consensus       164 ~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~--------~~~~~~g~--~~~~v~~~-~~~~~d~~~Le~~i  232 (481)
T 4e1o_A          164 AARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVE--------KAGLISLV--KMKFLPVD-DNFSLRGEALQKAI  232 (481)
T ss_dssp             HHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHH--------HHHHHHTC--EEEEECCC-TTSCCCHHHHHHHH
T ss_pred             HHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHH--------HHHHhCCC--ceEEEEcC-CCCcCCHHHHHHHH
Confidence            6532                   6789998887664321        22334454  66677776 57899999999999


Q ss_pred             hhcC-----CcEEEEcCCCCC--CCCCHHHHHHHHHHhCCEEEEechhhcccccccccCC---CCCcccEEEeccCcccC
Q 010008          239 ILFR-----PKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD---PFKYCDVVTTTTHKSLR  308 (520)
Q Consensus       239 ~~~~-----pklIi~~~s~~p--~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~---p~~~aDiv~~S~hK~l~  308 (520)
                      ++.+     |.+|+++.++++  ...|+++|+++|+++|+++++|+||..+....+....   .++.+|++++++|||+.
T Consensus       233 ~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~  312 (481)
T 4e1o_A          233 EEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMM  312 (481)
T ss_dssp             HHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSS
T ss_pred             HHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcC
Confidence            7632     677777654443  3789999999999999999999998776543322211   22357999999999999


Q ss_pred             CCCc-eEEEeeCCCcchhhHHH-hhcc---cCCC------------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 010008          309 GPRG-GMIFFKKDPVLGVELES-AINN---AVFP------------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVV  371 (520)
Q Consensus       309 Gprg-G~I~~~~~~~~~~~l~~-~i~~---~~~p------------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~  371 (520)
                      +|.+ |+++++++     .+.. .+..   ..+.            ..+++... ...++..+++.+...+++++.++..
T Consensus       313 ~p~g~g~l~~~~~-----~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~-~~l~~~~al~~~g~~g~~~~~~~~~  386 (481)
T 4e1o_A          313 VHFDCTGFWVKDK-----YKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRF-RSVKLWFVIRSFGVKNLQAHVRHGT  386 (481)
T ss_dssp             CCSSCEEEEESBH-----HHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCC-THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEeCH-----HHHHHHhcCCchhccCcccCCCCCcccccccCCCCc-cHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            9987 88888763     3222 1110   0000            11122111 2234444555554456788899999


Q ss_pred             HHHHHHHHHHHHC-CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCcccc
Q 010008          372 SNCRALASRLVEL-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTR  450 (520)
Q Consensus       372 ~na~~l~~~L~~~-G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~  450 (520)
                      ++++++.+.|.+. |++++.+. ..+++++++...+....++.+.|.+.|+.+-   .|+.  ..+...+|+++....  
T Consensus       387 ~~a~~l~~~L~~~~g~~~~~~~-~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~---~~~~--~~g~~~lR~~~~~~~--  458 (481)
T 4e1o_A          387 EMAKYFESLVRNDPSFEIPAKR-HLGLVVFRLKGPNSLTENVLKEIAKAGRLFL---IPAT--IQDKLIIRFTVTSQF--  458 (481)
T ss_dssp             HHHHHHHHHHHTCTTEECCSCC-CSSEEEEEESSCHHHHHHHHHHHHHHCSSBC---EEEE--ETTEEEEEEECCCTT--
T ss_pred             HHHHHHHHHHhcCCCeEEecCC-ceeEEEEEeCCchHHHHHHHHHHHhCCeEEE---EeeE--ECCEEEEEEEeCCCC--
Confidence            9999999999884 89987642 3456666664322123556677777674331   1111  112457999854322  


Q ss_pred             CCCHHHHHHHHHHHHHHHHH
Q 010008          451 GFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       451 g~~~~d~~~la~~i~~~l~~  470 (520)
                       .+++|++++.+.|+++.+.
T Consensus       459 -tt~~di~~~~~~i~~~~~~  477 (481)
T 4e1o_A          459 -TTRDDILRDWNLIRDAATL  477 (481)
T ss_dssp             -CCHHHHHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHHHHH
Confidence             3589999999999887753

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.89  E-value=8.2e-22  Score=206.88  Aligned_cols=294  Identities=12%  Similarity=0.012  Sum_probs=191.6

Q ss_pred             HHHHHHcCCCCCCCceeeecCChH-HHH--HHHHHhhCC--C----------CCEEEEcCCCCCcccccccccccccccc
Q 010008          146 KRALAAFNLDENKWGVNVQPLSGS-PAN--FEVYTAILK--P----------HDRIMGLDLPHGGHLSHGFMTPKRRVSG  210 (520)
Q Consensus       146 ~~~~~lfg~~~~~~~~~V~~~sGs-~A~--~~~l~all~--p----------GD~Vl~~~~~~~ghls~g~~~~~~~v~~  210 (520)
                      +.++++++++++    +|.+++|+ +++  ..++.++++  |          ||+|++.+|.|.++..        .+..
T Consensus        85 ~~ia~~~~~~~~----~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~--------~~~~  152 (427)
T 3ppl_A           85 QIWADLLGVPVE----QVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFS--------ITER  152 (427)
T ss_dssp             HHHHHHHTSCGG----GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHH--------HHHH
T ss_pred             HHHHHHhCCCcc----eEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHH--------HHHH
Confidence            567778899876    45567777 788  378888877  7          9999999998765431        2334


Q ss_pred             ccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCCCCC--CCCHH---HHHHHH-HHhCCEEEEechhhccc
Q 010008          211 TSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG-ASAYPR--DFDYP---RMRQIA-DAVGALLMMDMAHISGL  283 (520)
Q Consensus       211 ~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~-~s~~p~--~~d~~---~i~~ia-~~~g~~li~D~Ah~~gl  283 (520)
                      .|.  +++.+++++ ++ +|+++|+++++..++|+|++. .++||+  ..+.+   +|.++| +++|+++|+|++|. ++
T Consensus       153 ~g~--~~~~v~~~~-~g-~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~-~~  227 (427)
T 3ppl_A          153 FGF--EMISVPMNE-DG-PDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYA-VH  227 (427)
T ss_dssp             TTC--EEEEEEEET-TE-ECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTT-TC
T ss_pred             cCC--EEEEeCCCC-CC-CCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCc-cc
Confidence            554  667777774 33 999999999954478999876 678886  66666   788888 89999999999854 33


Q ss_pred             ccccccCCC-----------CCcccEEEeccCccc-CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHH
Q 010008          284 VAASVVADP-----------FKYCDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGL  351 (520)
Q Consensus       284 i~~~~~~~p-----------~~~aDiv~~S~hK~l-~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaal  351 (520)
                      .+.+....+           ....++++.|+||++ +|+|.||+++++      ++.+.+.........+.+...+.+ .
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~------~l~~~~~~~~~~~~~~~~~~~q~~-~  300 (427)
T 3ppl_A          228 TLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSA------ENRKWYTGHAGIRGIGPNKVNQLA-H  300 (427)
T ss_dssp             BSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCH------HHHHHHHHHHHHHCSCCCHHHHHH-H
T ss_pred             ccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCH------HHHHHHHHHhhcccCCCCHHHHHH-H
Confidence            333221111           113458899999974 688899999987      666665433211112333333333 2


Q ss_pred             HHHHHH--hcCchhHHHHHHHHHHHHHHHHHHHH----C-CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEc
Q 010008          352 AVCLKH--AQSPEFKVYQNKVVSNCRALASRLVE----L-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN  424 (520)
Q Consensus       352 a~al~~--~~~~~~~~~~~~i~~na~~l~~~L~~----~-G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~  424 (520)
                      +.+++.  ......++..+.+.++++.+.+.|.+    . ++.+..+ ...+++|+++...  +..++.+.|.++||.+.
T Consensus       301 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p-~~g~~~~~~~~~~--~~~~~~~~l~~~gv~v~  377 (427)
T 3ppl_A          301 ARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVP-AGGYFISLDVVPG--TASRVAELAKEAGIALT  377 (427)
T ss_dssp             HHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCC-SBSSCEEEECSTT--CHHHHHHHHHHTTEECC
T ss_pred             HHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCC-CccEEEEEECCcc--hHHHHHHHHHHCCCEEe
Confidence            223321  00122345556666677777777754    2 4665543 2356678887532  57788889999999995


Q ss_pred             CC-CCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          425 KN-SVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       425 ~~-~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      .+ ...+......++++||+....     +++++++.++.|.++++..
T Consensus       378 ~~g~~~~~~~~~~~~~~Ris~~~~-----~~~~i~~~~~~l~~~l~~~  420 (427)
T 3ppl_A          378 GAGSSYPLRQDPENKNLRLAPSLP-----PVEELEVAMDGVATCVLLA  420 (427)
T ss_dssp             CTTTTSGGGCCTTSCEEEECCSSS-----CHHHHHHHHHHHHHHHHHH
T ss_pred             cCcCcCCCCCCCCCCeEEEECCCC-----CHHHHHHHHHHHHHHHHHH
Confidence            41 111100012467899997532     4799999999999988754

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.89  E-value=8.3e-22  Score=205.32  Aligned_cols=322  Identities=15%  Similarity=0.169  Sum_probs=197.9

Q ss_pred             eEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHH
Q 010008           97 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY  176 (520)
Q Consensus        97 ~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l  176 (520)
                      .+..+.+++.+.+.+++.. +.+. ..+|...||  +++..+++|    +++++++|.+.     .|.++||++|+..++
T Consensus        31 p~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~r~--~~~~~~~l~----~~la~~~g~~~-----~i~~~sG~~a~~~~l   97 (398)
T 1gc0_A           31 PVYQTATFTFPTVEYGAAC-FAGE-QAGHFYSRI--SNPTLNLLE----ARMASLEGGEA-----GLALASGMGAITSTL   97 (398)
T ss_dssp             CBCCCSCBCCC-------------------------CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHH
T ss_pred             CccCCCccccCCHHHHHHh-hcCC-cCCCcccCC--CChHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHH
Confidence            4455677777777777652 2232 123332232  345555555    67888999862     466799999999999


Q ss_pred             HhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC-
Q 010008          177 TAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-  255 (520)
Q Consensus       177 ~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~-  255 (520)
                      .+++++||+|+++++.|+++.....    ......|.  +++.++.      .|++++++.+++ ++++|++..++||+ 
T Consensus        98 ~~~~~~gd~vl~~~~~~~~~~~~~~----~~~~~~g~--~~~~~~~------~d~~~l~~~i~~-~~~~v~~~~~~nptG  164 (398)
T 1gc0_A           98 WTLLRPGDEVLLGNTLYGCTFAFLH----HGIGEFGV--KLRHVDM------ADLQALEAAMTP-ATRVIYFESPANPNM  164 (398)
T ss_dssp             HHHCCTTCEEEEESSCCSHHHHHHH----HTGGGGTC--EEEEECT------TCHHHHHHHCCT-TEEEEEEESSCTTTC
T ss_pred             HHHhcCCCEEEEeCCCchhHHHHHH----HHHHHcCC--EEEEECC------CCHHHHHHhcCC-CCeEEEEECCCCCCc
Confidence            9999999999999998876542110    00123344  5555443      389999999987 89999999888875 


Q ss_pred             -CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHh
Q 010008          256 -DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESA  330 (520)
Q Consensus       256 -~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~  330 (520)
                       ..|+++|+++|+++|+++++|++|..+...     .++. ++|+++.|+||++.||.   +|+++++++     .+.+.
T Consensus       165 ~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~-----~~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~-----~~~~~  234 (398)
T 1gc0_A          165 HMADIAGVAKIARKHGATVVVDNTYCTPYLQ-----RPLELGADLVVHSATKYLSGHGDITAGIVVGSQA-----LVDRI  234 (398)
T ss_dssp             CCCCHHHHHHHHGGGTCEEEEECTTTHHHHC-----CGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHH-----HHHHH
T ss_pred             ccccHHHHHHHHHHcCCEEEEECCCcccccC-----CchhhCceEEEECCccccCCCCCCeEEEEEEChH-----HHHHH
Confidence             789999999999999999999998766542     2233 58999999999997764   599998872     23223


Q ss_pred             hcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCC-CE--------------EecC--CC
Q 010008          331 INNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG-YK--------------LVSG--GS  393 (520)
Q Consensus       331 i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G-~~--------------v~~~--gt  393 (520)
                      +.........++.+....++...+++     .+....++..+|++.+.+.|.+.+ +.              +..+  ..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~  309 (398)
T 1gc0_A          235 RLQGLKDMTGAVLSPHDAALLMRGIK-----TLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQ  309 (398)
T ss_dssp             HHTHHHHHTCCCCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------C
T ss_pred             HHHHhhccCCCCCCHHHHHHHHhccc-----hHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCC
Confidence            43322110122333333332222332     345667788889999999997732 21              1111  01


Q ss_pred             CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC---------------C-------CCCCCEEEEccCCccccC
Q 010008          394 DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK---------------S-------ALVPGGIRIGSPAMTTRG  451 (520)
Q Consensus       394 ~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~---------------~-------~~~~~giRig~~~~tt~g  451 (520)
                      ..+++.+.+..   +.+.+.++|++.+|.+...+ .|+.               +       ...++.|||+.+..+   
T Consensus       310 ~~~~~~~~l~~---~~~~~~~~l~~~~i~~~~~s-~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~---  382 (398)
T 1gc0_A          310 PGGMIAFELKG---GIGAGRRFMNALQLFSRAVS-LGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLED---  382 (398)
T ss_dssp             CTTEEEEEETT---HHHHHHHHHHHCSSSEECSC-CSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSC---
T ss_pred             CceEEEEEECC---CHHHHHHHHHhCCCceeccC-CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCC---
Confidence            24555666642   23567888888888764311 0110               0       012478999987544   


Q ss_pred             CCHHHHHHHHHHHHHH
Q 010008          452 FSEKEFVAIADFIHEG  467 (520)
Q Consensus       452 ~~~~d~~~la~~i~~~  467 (520)
                       ++++++.+.++|+++
T Consensus       383 -~~~~i~~l~~al~~~  397 (398)
T 1gc0_A          383 -IDDLLADVQQALKAS  397 (398)
T ss_dssp             -HHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhc
Confidence             478888888877653

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.89  E-value=1.3e-21  Score=199.45  Aligned_cols=313  Identities=13%  Similarity=0.112  Sum_probs=210.7

Q ss_pred             hccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-
Q 010008           93 FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-  169 (520)
Q Consensus        93 ~~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-  169 (520)
                      +..|+|..++|+  +++.|++++...+...  .+||...      . .++    ++++++++|++++    +|.+++|+ 
T Consensus        15 ~~~id~~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~~~------~-~~l----r~~la~~~~~~~~----~i~~t~g~~   77 (350)
T 3fkd_A           15 SEIVNFSTTVWTDGDKDHLEKHLVENLNCI--RHYPEPD------A-GTL----RQMLAKRNSVDNN----AILVTNGPT   77 (350)
T ss_dssp             -CCEECSCCSCCCSCCHHHHHHHHHTGGGG--GSCCCTT------C-HHH----HHHHHHHTTCCGG----GEEEESHHH
T ss_pred             ccEEEccCCCCCCCCCHHHHHHHHHhHhHH--hcCCCCc------H-HHH----HHHHHHHhCcCHH----HEEEcCCHH
Confidence            467888888765  5799999998877322  3455421      1 233    3678889999875    45556776 


Q ss_pred             HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEccc-CCCCCCCCHHHHHHHhhhcCCcEEEE
Q 010008          170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEKTAILFRPKLIIA  248 (520)
Q Consensus       170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~-d~~~~~iD~d~le~~i~~~~pklIi~  248 (520)
                      +|+.+++.++.  ||+|++.+|.|.+..        ..+...|.  +++.+++ +. ...+++        + ++|+|++
T Consensus        78 ~al~~~~~~l~--gd~Vi~~~p~~~~~~--------~~~~~~g~--~~~~v~~~~~-~~~~~~--------~-~~~~v~i  135 (350)
T 3fkd_A           78 AAFYQIAQAFR--GSRSLIAIPSFAEYE--------DACRMYEH--EVCFYPSNED-IGEADF--------S-NMDFCWL  135 (350)
T ss_dssp             HHHHHHHHHTT--TCEEEEEESCCHHHH--------HHHHHTTC--EEEEEETTSC-GGGSCC--------T-TCSEEEE
T ss_pred             HHHHHHHHHHC--CCEEEEeCCCcHHHH--------HHHHHcCC--eEEEEecCCc-cccCcc--------C-CCCEEEE
Confidence            89999998887  999999998775432        12334455  6666666 42 233443        3 7999999


Q ss_pred             cCCCCCC--CCCHHHHHHHHHHhC-CEEEEechhhcccccccccC-CCCC--cccEEEeccCccc--CCCCceEEEeeCC
Q 010008          249 GASAYPR--DFDYPRMRQIADAVG-ALLMMDMAHISGLVAASVVA-DPFK--YCDVVTTTTHKSL--RGPRGGMIFFKKD  320 (520)
Q Consensus       249 ~~s~~p~--~~d~~~i~~ia~~~g-~~li~D~Ah~~gli~~~~~~-~p~~--~aDiv~~S~hK~l--~GprgG~I~~~~~  320 (520)
                      +.++||+  ..+.+++.++++.++ .+||+|++|. ++...+... ..+.  ..++++.|+||++  +|.|.|++++++ 
T Consensus       136 ~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~-~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~-  213 (350)
T 3fkd_A          136 CNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYV-SFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANK-  213 (350)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTT-TSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCH-
T ss_pred             eCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchh-hhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeCH-
Confidence            9999886  789999999999886 7999999974 333332211 1111  3458899999986  578889999976 


Q ss_pred             CcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCCeeEE
Q 010008          321 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVL  399 (520)
Q Consensus       321 ~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~~~~  399 (520)
                           ++.+++.....+   .+++....++...+|+..  ..+.+..++..++++.+.+.|.+. |+.+..+  ..++++
T Consensus       214 -----~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~~~~~  281 (350)
T 3fkd_A          214 -----DFMKRVAAFSTP---WAVNALAIEAAKFILIHP--AQFTLPIRKWQRNTVDFITALNRLDGVEVHPS--GTTFFL  281 (350)
T ss_dssp             -----HHHHHHHTTCCT---TCSCHHHHHHHHHHHHCT--TTTCCCHHHHHHHHHHHHHHHHHSTTEEECCC--SSSEEE
T ss_pred             -----HHHHHHHHhCCC---CCCCHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHHHHHhcCCCcEECCC--CCcEEE
Confidence                 777777654332   233444444444455532  123233344448889999999885 8887543  345566


Q ss_pred             EEecCCCCCHHHHHHHHhh-cCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          400 VDLRPMGIDGARVEKILDM-ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       400 vd~~~~g~~~~~~~~~L~~-~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +.+...  +..++.+.|.+ .||.+..+...   +...++++||++.       +++|++++.+.|+++++.
T Consensus       282 ~~~~~~--~~~~l~~~L~~~~gi~v~~g~~f---~~~~~~~iRis~~-------~~~~~~~l~~al~~~~~~  341 (350)
T 3fkd_A          282 LRLKKG--TAAELKKYMLEEYNMLIRDASNF---RGLDESYVRITTQ-------RPAQNQLFIKALETFLEK  341 (350)
T ss_dssp             EEESSS--CHHHHHHHHHHTTCEECEECTTS---TTCCTTEEEEECC-------CHHHHHHHHHHHHHHHTC
T ss_pred             EECCCC--CHHHHHHHHHHHCCEEEEeCccC---CCCCCCEEEEEcC-------CHHHHHHHHHHHHHHHHH
Confidence            777532  67778888877 99999543221   2234679999854       478999999999887753

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.89  E-value=4e-22  Score=212.79  Aligned_cols=313  Identities=11%  Similarity=-0.021  Sum_probs=205.7

Q ss_pred             CCcchhHHHHHHHHHHHHHHHcCCCCCC------CceeeecCChHHHHHHHHHhhC-------------------CCCCE
Q 010008          131 YGGNEYIDELETLCQKRALAAFNLDENK------WGVNVQPLSGSPANFEVYTAIL-------------------KPHDR  185 (520)
Q Consensus       131 y~g~~~~d~lE~~a~~~~~~lfg~~~~~------~~~~V~~~sGs~A~~~~l~all-------------------~pGD~  185 (520)
                      |...+...++|+.+.+++++++|.+.+.      ....|.+++||+||+.++.+..                   .|++.
T Consensus       105 ~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~  184 (475)
T 3k40_A          105 WIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLV  184 (475)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEE
T ss_pred             ccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeE
Confidence            3445678899999999999999998531      0113555778899998877652                   14578


Q ss_pred             EEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcC-----CcEEEEcCCCCC--CCCC
Q 010008          186 IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIAGASAYP--RDFD  258 (520)
Q Consensus       186 Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~-----pklIi~~~s~~p--~~~d  258 (520)
                      |++.+..|.+..        +.+...|.  +++.+++| +++ +|+++|++++++.+     |++|++..+++.  ...|
T Consensus       185 vi~s~~~H~s~~--------~~~~~~g~--~~~~v~~d-~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~  252 (475)
T 3k40_A          185 GYCSDQAHSSVE--------RAGLLGGV--KLRSVQSE-NHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY  252 (475)
T ss_dssp             EEEETTSCHHHH--------HHHHHHTC--EEEEECCB-TTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC
T ss_pred             EEECCCchHHHH--------HHHHHcCC--ceEEEECC-CCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC
Confidence            998887664332        23344565  66777777 467 99999999997631     666776654433  3789


Q ss_pred             HHHHHHHHHHhCCEEEEechhhcccccccccCC---CCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHH-Hhhc-
Q 010008          259 YPRMRQIADAVGALLMMDMAHISGLVAASVVAD---PFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE-SAIN-  332 (520)
Q Consensus       259 ~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~---p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~-~~i~-  332 (520)
                      +++|+++|+++|+++++|+||..+....+....   .++.+|++++++|||+.+|.| |+++++++     +.. +.+. 
T Consensus       253 l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~-----~~l~~~~~~  327 (475)
T 3k40_A          253 LDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDP-----SWVVNAFNV  327 (475)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSG-----GGC------
T ss_pred             HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCH-----HHHHHHhcC
Confidence            999999999999999999998776543322211   223579999999999999887 88888774     221 1110 


Q ss_pred             ------ccC--------CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCCee
Q 010008          333 ------NAV--------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHL  397 (520)
Q Consensus       333 ------~~~--------~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~~  397 (520)
                            ...        ....+++... ...++..+++.+...++++..++..++++++.+.|.+. |++++.+. ...+
T Consensus       328 ~~~yl~~~~~~~~~~~~~~~~~~sr~~-~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~-~~~i  405 (475)
T 3k40_A          328 DPLYLKHDMQGSAPDYRHWQIPLGRRF-RALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEI-NMGL  405 (475)
T ss_dssp             ---------------------CCCGGG-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCC-BTTE
T ss_pred             CccccCCCcCCCCCCcccccccCCCcc-cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-ceEE
Confidence                  000        0011122111 23345556665555677888999999999999999984 99988653 3455


Q ss_pred             EEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          398 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       398 ~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +.+++...+....++.+.|.+.|+.+-   .|+.  ..+...+|+++...   ..+++|++++.+.|.++.+.
T Consensus       406 v~f~~~~~~~~~~~l~~~L~~~g~~~~---~~~~--~~g~~~lR~~~~~~---~tt~~di~~~~~~i~~~~~~  470 (475)
T 3k40_A          406 VCFRLKGSNERNEALLKRINGRGHIHL---VPAK--IKDVYFLRMAICSR---FTQSEDMEYSWKEVSAAADE  470 (475)
T ss_dssp             EEEEESSCHHHHHHHHHHHHHHTSCBC---EEEE--ETTEEEEEEECCCT---TCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCchHHHHHHHHHHHhCCcEEE---EeeE--ECCEEEEEEEeCCC---CCCHHHHHHHHHHHHHHHHH
Confidence            666664322223556677776665431   1111  12346799985422   23589999999999988764

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.82  E-value=6.3e-25  Score=227.96  Aligned_cols=336  Identities=14%  Similarity=0.117  Sum_probs=218.4

Q ss_pred             ccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC--CCCCCCceeeecCChH
Q 010008           94 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSGS  169 (520)
Q Consensus        94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg--~~~~~~~~~V~~~sGs  169 (520)
                      +.|+|..+++  .+++.+++++...+.+. ..+|+.     +   ..++++...+++.+.+|  ++++    +|.+++|+
T Consensus        32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~-----~---~~~l~~~la~~l~~~~g~~~~~~----~v~~~~g~   98 (392)
T 3b1d_A           32 QLLPAWIADMDFEVMPEVKQAIHDYAEQL-VYGYTY-----A---SDELLQAVLDWEKSEHQYSFDKE----DIVFVEGV   98 (392)
Confidence            4567766554  36788999988777432 223332     1   34555556677777778  4444    45556765


Q ss_pred             -HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC--CCCCCHHHHHHHhhhcCCcEE
Q 010008          170 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--TGLVDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       170 -~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~--~~~iD~d~le~~i~~~~pklI  246 (520)
                       +|+.+++.++++|||+|++.+|.|.++..        .+...|.  +++.++++++  ++.+|++++++.++..++++|
T Consensus        99 ~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v  168 (392)
T 3b1d_A           99 VPAISIAIQAFTKEGEAVLINSPVYPPFAR--------SVRLNNR--KLVSNSLKEENGLFQIDFEQLENDIVENDVKLY  168 (392)
Confidence             89999999999999999999988765431        2233444  5556666422  356899999999874478999


Q ss_pred             EEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCC-------CcccEEEeccCccc--CCCCc
Q 010008          247 IAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-------KYCDVVTTTTHKSL--RGPRG  312 (520)
Q Consensus       247 i~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~-------~~aDiv~~S~hK~l--~Gprg  312 (520)
                      +++.++||+  ..   ++++|+++|+++|++||+|++|. ++...+....++       ...++++.|+||++  +|+|.
T Consensus       169 ~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~  247 (392)
T 3b1d_A          169 LLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQ-DLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKN  247 (392)
Confidence            988888876  33   58999999999999999999965 333332111111       12348889999997  67889


Q ss_pred             eEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-C-CCEEec
Q 010008          313 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-L-GYKLVS  390 (520)
Q Consensus       313 G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~-G~~v~~  390 (520)
                      |+++++++     ++.+.+.....+...++++....++...+|+.. ...+++..+++.++++.+.+.|.+ . |+.+..
T Consensus       248 G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  321 (392)
T 3b1d_A          248 SYAIIENP-----TLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG-KPWLVALKAVLEENIQFAVEYFAQEAPRLKVMK  321 (392)
Confidence            99998763     466666554333222233333333333455532 233466777888888889988876 3 776654


Q ss_pred             CCCCCeeEEEEecCCCCCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          391 GGSDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       391 ~gt~~~~~~vd~~~~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      + ..+.+.|+++...+.+..++.+.| +++||.+..+..+   ++..++++||++..      +++++++.++.|.++++
T Consensus       322 ~-~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f---~~~~~~~iRi~~~~------~~e~i~~~l~~l~~~l~  391 (392)
T 3b1d_A          322 P-QGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDY---GSEGELHARLNIAA------PKSLVEEICKRIVCCLP  391 (392)
Confidence            3 234445677754334556666767 5899999543211   12235689998542      36888888888877653

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.89  E-value=3.2e-21  Score=206.82  Aligned_cols=335  Identities=11%  Similarity=0.027  Sum_probs=212.4

Q ss_pred             CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh---
Q 010008          103 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI---  179 (520)
Q Consensus       103 n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al---  179 (520)
                      ..+++.|++++.....|...      ..|+..+...++|+.+++++++++|++....  -+..++|++||..++.++   
T Consensus       110 ~~~~~~v~~~~~~~~~n~~~------~~~~~~~~~~~le~~~~~~la~~~g~~~~~~--~~~t~ggt~a~~~al~~ar~~  181 (497)
T 2qma_A          110 PPLMPAVAAEAMIAALNQSM------DSWDQASSATYVEQKVVNWLCDKYDLSEKAD--GIFTSGGTQSNQMGLMLARDW  181 (497)
T ss_dssp             CCBHHHHHHHHHHHHHCCCT------TCGGGCHHHHHHHHHHHHHHHHHTTCCTTCE--EEEESSHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHhhcccc------cchhhChHHHHHHHHHHHHHHHHhCCCCCCC--eEEcCCchHHHHHHHHHHHHH
Confidence            45688898888666554311      1133345678899999999999999975222  244466679999888773   


Q ss_pred             -C---------CC------CC-EEEEcCCCCCccccccccccccccccccceE-EEEEcccCCCCCCCCHHHHHHHhhhc
Q 010008          180 -L---------KP------HD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYF-ESMPYRLDESTGLVDYDMLEKTAILF  241 (520)
Q Consensus       180 -l---------~p------GD-~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~-~~v~~~~d~~~~~iD~d~le~~i~~~  241 (520)
                       +         ++      || .|++.++.|.+..        +.....|.+. +++.++++ +++.+|+++|++++++.
T Consensus       182 ~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~--------~~~~~~g~g~~~v~~v~~~-~~~~~d~~~L~~~i~~~  252 (497)
T 2qma_A          182 IADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQ--------KSASWMGLGEKAVMTVDAN-ADGTMDITKLDEVIAQA  252 (497)
T ss_dssp             HHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHH--------HHHHHTTSCGGGEEEECBC-TTSSBCGGGHHHHHHHH
T ss_pred             HHHhhcccchhhcccccccCCeEEEECCCchHHHH--------HHHHHcCCCcccEEEEecC-CCCcCCHHHHHHHHHHH
Confidence             3         13      46 7887776654332        1223333322 34556666 46899999999998763


Q ss_pred             ---C--CcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhccccccccc--CCCCCcccEEEeccCcccCCCCc
Q 010008          242 ---R--PKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFKYCDVVTTTTHKSLRGPRG  312 (520)
Q Consensus       242 ---~--pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~--~~p~~~aDiv~~S~hK~l~Gprg  312 (520)
                         .  |.+|++..++|++  ..|+++|+++|+++|+++++|+||..+....+..  ...++.+|++++|+|||+.+|.+
T Consensus       253 ~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~  332 (497)
T 2qma_A          253 KAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTIS  332 (497)
T ss_dssp             HHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCSS
T ss_pred             HHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCcc
Confidence               1  3377776666554  7899999999999999999999987665433311  01123689999999999988765


Q ss_pred             -eEEEeeCCCcchhhHHHhhcccC-C--CCCCCCChHHH----------HHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 010008          313 -GMIFFKKDPVLGVELESAINNAV-F--PGLQGGPHNHT----------IGGLAVCLKHAQSPEFKVYQNKVVSNCRALA  378 (520)
Q Consensus       313 -G~I~~~~~~~~~~~l~~~i~~~~-~--p~~~g~p~~~~----------iaala~al~~~~~~~~~~~~~~i~~na~~l~  378 (520)
                       |+++++++     ...+.+.... +  ...+..++...          ..++..+++.+...++.+..++..++++++.
T Consensus       333 ~G~l~~~~~-----~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~  407 (497)
T 2qma_A          333 CGALLVNDK-----SNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVA  407 (497)
T ss_dssp             CEEEEESCG-----GGGGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCH-----HHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence             99998874     3223222110 0  00000111111          1123445665544566788899999999999


Q ss_pred             HHHHH-CCCEEecCCCCCeeEEEEecCCCCCH----HHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEcc-CCccccCC
Q 010008          379 SRLVE-LGYKLVSGGSDNHLVLVDLRPMGIDG----ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS-PAMTTRGF  452 (520)
Q Consensus       379 ~~L~~-~G~~v~~~gt~~~~~~vd~~~~g~~~----~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~-~~~tt~g~  452 (520)
                      +.|.+ .|++++.+. ...++++.+.+.+.+.    ..+.+.|.+.|+.+..    +.. ....+.+|+++ +..+    
T Consensus       408 ~~L~~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~----~~~-~~g~~~lRis~~~~~~----  477 (497)
T 2qma_A          408 DMIRTNDQFELLAEP-SLSTVLFRATHETADLDELNKALRLEALTRGIAVLG----ETI-VDGKTALKFTILNPCL----  477 (497)
T ss_dssp             HHHHTCTTEEECSCC-SSSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCE----EEE-ETTEEEEEEECCCTTC----
T ss_pred             HHHhhCCCeEEEcCC-CceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEE----eeE-ECCEEEEEEEecCCCC----
Confidence            99988 488886543 2345666665432222    3455677788988732    111 11245799986 4444    


Q ss_pred             CHHHHHHHHHHHHHHHH
Q 010008          453 SEKEFVAIADFIHEGVE  469 (520)
Q Consensus       453 ~~~d~~~la~~i~~~l~  469 (520)
                      +++|++++.+.|.++++
T Consensus       478 t~edi~~~~~~l~~~~~  494 (497)
T 2qma_A          478 TTSDFESLLSKINMLAV  494 (497)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            48999999999988764

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.89  E-value=3.2e-22  Score=210.72  Aligned_cols=286  Identities=18%  Similarity=0.160  Sum_probs=190.9

Q ss_pred             ccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhcc-CCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC
Q 010008           76 EADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNK-YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL  154 (520)
Q Consensus        76 ~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~-y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~  154 (520)
                      +...++.+.+.++.+++...++.++.+|  .+.|++++....... ...+..+  |..+....+++|    +++++++|+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n--~~~vl~A~~~~~~~~~~~~~~~g--~~y~~~~~~~l~----~~la~~~g~   80 (431)
T 3ht4_A            9 EKIAPIVKEVESQITEVHKRADEVIESN--QFRVLESFGKHKISDSHFIPTTG--YGYDDIGRDTLE----KVYADVFGA   80 (431)
T ss_dssp             TTSHHHHHHHHHHTHHHHHHHHHHHHHH--HHHHHHHHHHTTCCGGGSCCCCT--TCCSCHHHHHHH----HHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhchhhhhcCCCCC--CCCChhhHHHHH----HHHHHHhCC
Confidence            4455566666677777778888888777  478888887643211 1111122  111223344444    789999999


Q ss_pred             CCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcC-CCCCccccccccc--cccccccccceEEEEEcccCCCCCCCCH
Q 010008          155 DENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLD-LPHGGHLSHGFMT--PKRRVSGTSIYFESMPYRLDESTGLVDY  231 (520)
Q Consensus       155 ~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~-~~~~ghls~g~~~--~~~~v~~~g~~~~~v~~~~d~~~~~iD~  231 (520)
                      +.+.  ++++++||++||.+++.++++|||+|++++ +.|+++......+  ....+...|.  +++.+++++ ++.+|+
T Consensus        81 ~~~~--~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~--~~~~v~~~~-~~~~d~  155 (431)
T 3ht4_A           81 EAGL--VRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNI--GYNAVPLTE-GGLVDF  155 (431)
T ss_dssp             SEEC--CBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTC--EEEECCBCT-TSSBCH
T ss_pred             Cccc--ccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCC--EEEEeCCCC-CCCcCH
Confidence            8642  245568999999999999999999999998 7776543211000  0011222354  677777763 588999


Q ss_pred             HHHHHHhhhcCCcEEEEc-CCCCCC-----CCCHHHHHHHHHH--hCCEEEEechhhcccccccccCCCCC-cccEEEec
Q 010008          232 DMLEKTAILFRPKLIIAG-ASAYPR-----DFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK-YCDVVTTT  302 (520)
Q Consensus       232 d~le~~i~~~~pklIi~~-~s~~p~-----~~d~~~i~~ia~~--~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S  302 (520)
                      ++|++++++ +||+|++. .++||+     ..|+++|+++|++  +|+++++|++|..+...    ..|+. ++|++++|
T Consensus       156 e~l~~~l~~-~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~----~~~~~~g~Di~~~S  230 (431)
T 3ht4_A          156 EAVAAAIHS-NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEE----QEPCHVGADLMAGS  230 (431)
T ss_dssp             HHHHHHCCT-TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSS----CCGGGTTCSEEEEE
T ss_pred             HHHHhhcCC-CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccC----CCccccCCeEEEcC
Confidence            999999987 89999998 466665     4478999999999  99999999997655321    12333 68999999


Q ss_pred             cCcccCC---CCceEEEeeCCCcchhhHHHhhcccC-CCCC--CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q 010008          303 THKSLRG---PRGGMIFFKKDPVLGVELESAINNAV-FPGL--QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA  376 (520)
Q Consensus       303 ~hK~l~G---prgG~I~~~~~~~~~~~l~~~i~~~~-~p~~--~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~  376 (520)
                      +||++.|   +.||++++++      ++.+++.... .++.  ..++.......+..+++.     ...+.++..++++.
T Consensus       231 ~sK~lgg~~~~~GG~v~~~~------~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~a~~  299 (431)
T 3ht4_A          231 LIKNPGGGIVKTGGYIVGKE------QYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFL-----APHVAGQALKGAIF  299 (431)
T ss_dssp             TTSGGGTTTCSSCEEEEECH------HHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred             ccccCCCCCCCceEEEEecH------HHHHHHHHHhccCCcccccCccHHHHHHHHhHhhh-----HHHHHHHHHHHHHH
Confidence            9999866   7889999987      6766664321 1221  112211111111123332     24567888999999


Q ss_pred             HHHHHHHCCCEEec
Q 010008          377 LASRLVELGYKLVS  390 (520)
Q Consensus       377 l~~~L~~~G~~v~~  390 (520)
                      +++.|++.|+++..
T Consensus       300 l~~~L~~~g~~v~p  313 (431)
T 3ht4_A          300 TAAFLEKLGMNTSP  313 (431)
T ss_dssp             HHHHHHHHTCCEES
T ss_pred             HHHHHHhCcCEecC
Confidence            99999999988744

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.89  E-value=9.5e-23  Score=215.90  Aligned_cols=280  Identities=14%  Similarity=0.152  Sum_probs=184.7

Q ss_pred             HHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEccc
Q 010008          144 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL  222 (520)
Q Consensus       144 a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~  222 (520)
                      +++++++ +|++.     .+..++|+ +||.+++.++++|||+|++.++.|.+...        .+...|.  +++.++.
T Consensus        62 ~~~~la~-~g~~~-----~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~--------~~~~~G~--~~~~v~~  125 (446)
T 2x3l_A           62 SMKQVEK-HSDYD-----GYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLH--------ALDISQQ--EGHFIET  125 (446)
T ss_dssp             HHHHHCS-CTTEE-----EEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHH--------HHHHHTC--CEEECEE
T ss_pred             HHHHHHh-cCCCc-----eEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHH--------HHHHcCC--eEEEEeC
Confidence            3478888 99872     34557776 99999999999999999999987765431        2334455  4555555


Q ss_pred             --CCCC---CCCCHHHHHHHhhhcCCcEEEEcCCCCCC-CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCC-C-
Q 010008          223 --DEST---GLVDYDMLEKTAILFRPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-K-  294 (520)
Q Consensus       223 --d~~~---~~iD~d~le~~i~~~~pklIi~~~s~~p~-~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~-~-  294 (520)
                        +++.   +.+|++++   +.+ ++|+|+++.+++.+ ..|+++|.++|+++|+++++|++|...+.+.+. +... . 
T Consensus       126 ~~~~~~~~~~~~d~~~l---~~~-~~~~v~~~~~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~-~~~~~~~  200 (446)
T 2x3l_A          126 HQSPLTNHYNKVNLSRL---NND-GHKLVVLTYPNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGF-PDSTLNY  200 (446)
T ss_dssp             EECTTTSSEEEEEC-----------CCEEEEESSCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTS-CCCGGGG
T ss_pred             eeccccCcCCCCCHHHH---cCC-CceEEEEECCCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCC-CCChHHc
Confidence              4221   46788887   444 78999888776644 789999999999999999999998763323222 2111 2 


Q ss_pred             cccEEEeccCcccCCCC-ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010008          295 YCDVVTTTTHKSLRGPR-GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN  373 (520)
Q Consensus       295 ~aDiv~~S~hK~l~Gpr-gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~n  373 (520)
                      ++|++++|+||++.|+. +|+++++++..   + ...+.........++++...++++..+++.+...+.+++.++..++
T Consensus       201 g~Di~~~S~~K~l~~~~g~g~l~~~~~~i---~-~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l  276 (446)
T 2x3l_A          201 QADYVVQSFHKTLPALTMGSVLYIHKNAP---Y-RENIIEYLSYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQL  276 (446)
T ss_dssp             TCSEEEECHHHHSSSCTTCEEEEEETTCT---T-HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             CCCEEEECCccccccccccEEEEEcCCcC---C-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            58999999999987764 49999988421   1 1122211111124567777788877777655433333355555555


Q ss_pred             HHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCC
Q 010008          374 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFS  453 (520)
Q Consensus       374 a~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~  453 (520)
                      ++.+.+.    |++++... +...+++++.  ++++.++.+.|.+.||.+..   +|      .+.+|++++..+    +
T Consensus       277 ~~~l~~~----g~~~~~~~-~~~~l~i~~~--~~~~~~l~~~L~~~GI~v~~---~g------~~~iRi~~~~~~----t  336 (446)
T 2x3l_A          277 IECLENK----GFEMLQVD-DPLKLLIKYE--GFTGHDIQNWFMNAHIYLEL---AD------DYQALAILPLWH----H  336 (446)
T ss_dssp             HHHHHHH----TCEEEECS-STTEEEEECT--TSCHHHHHHHHHHTTEEESE---EC------SSCEEEECCCCC----T
T ss_pred             HHHHHHc----CCEECcCC-CCeEEEEEeC--CcCHHHHHHHHHHCCCEEEe---cC------CCEEEEEeecCC----C
Confidence            5555444    88887643 3334666664  66788888889888999952   22      357999876443    4


Q ss_pred             HHHHHHHHHHHHHHHH
Q 010008          454 EKEFVAIADFIHEGVE  469 (520)
Q Consensus       454 ~~d~~~la~~i~~~l~  469 (520)
                      ++|+ ++.+.|.++++
T Consensus       337 ~e~i-~l~~aL~~~~~  351 (446)
T 2x3l_A          337 DDTY-LFDSLLRKIED  351 (446)
T ss_dssp             TCCC-CHHHHHHHHHT
T ss_pred             HHHH-HHHHHHHHHHH
Confidence            6888 88888888764

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.89  E-value=5e-22  Score=219.42  Aligned_cols=296  Identities=17%  Similarity=0.136  Sum_probs=205.8

Q ss_pred             hhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccc
Q 010008          135 EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  213 (520)
Q Consensus       135 ~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~  213 (520)
                      ..+.++|    ++++++||++..     +.+++|+ .||.++++++++|||+|++..+.|.++..        .+...|.
T Consensus       195 g~i~eaE----~~lA~~fGa~~a-----~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~--------~l~lsGa  257 (715)
T 3n75_A          195 GPHKEAE----QYIARVFNADRS-----YMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTH--------LMMMSDV  257 (715)
T ss_dssp             THHHHHH----HHHHHHHTCSEE-----EEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH--------HHHHSCC
T ss_pred             HHHHHHH----HHHHHHhCCCCc-----eEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHH--------HHHHcCC
Confidence            3455555    788999999862     4458886 99999999999999999999998765531        2445665


Q ss_pred             eEEEEEcccCCCCCC----C-----CHHHHHHHhhhc-C---CcEEEEcCCCCCC-CCCHHHHHHHHHHhCCEEEEechh
Q 010008          214 YFESMPYRLDESTGL----V-----DYDMLEKTAILF-R---PKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAH  279 (520)
Q Consensus       214 ~~~~v~~~~d~~~~~----i-----D~d~le~~i~~~-~---pklIi~~~s~~p~-~~d~~~i~~ia~~~g~~li~D~Ah  279 (520)
                        +++.++.+.+++.    +     |+++|++++++. +   |++++++.+++.+ ..|+++|.++|++++  +++|+||
T Consensus       258 --~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~pn~~G~v~dl~~I~ela~~~~--livDEAH  333 (715)
T 3n75_A          258 --TPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS--IHFDSAW  333 (715)
T ss_dssp             --EEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESSCTTSEEECHHHHHHHCCCSE--EEEECTT
T ss_pred             --EEEEEeccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECCCCCCccCCHHHHHHHhCcCc--EEEcccc
Confidence              6666554422332    3     899999999863 2   3478887776544 789999999998653  7999999


Q ss_pred             hcccccccccC--CCCC-c--ccEE---EeccCcccCCC-CceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHH
Q 010008          280 ISGLVAASVVA--DPFK-Y--CDVV---TTTTHKSLRGP-RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGG  350 (520)
Q Consensus       280 ~~gli~~~~~~--~p~~-~--aDiv---~~S~hK~l~Gp-rgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaa  350 (520)
                      ..++.+.+..+  +++. +  +|++   ++|+||+|+|+ .+|+|.++++.     ...+++........++|+...+|+
T Consensus       334 ~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i-----~~~~~~~~~~~~~STSpsy~~~As  408 (715)
T 3n75_A          334 VPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDV-----NEETFNEAYMMHTTTSPHYGIVAS  408 (715)
T ss_dssp             CTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCC-----CHHHHHHHHHHTSCSSCCHHHHHH
T ss_pred             ccccccCCccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchh-----hHHHHHHHHHhhcCCCchHHHHHH
Confidence            98865443322  3333 2  6865   89999999998 56999998741     223344433333467889999999


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-----C--CEEecCC----------------------------CCC
Q 010008          351 LAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-----G--YKLVSGG----------------------------SDN  395 (520)
Q Consensus       351 la~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-----G--~~v~~~g----------------------------t~~  395 (520)
                      +.+|++.+...+..++.++..++++.+++.|.+.     |  ++++.+.                            .|.
T Consensus       409 ldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp  488 (715)
T 3n75_A          409 TETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDP  488 (715)
T ss_dssp             HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECT
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCC
Confidence            9999887753344678899999999999998763     2  4554321                            011


Q ss_pred             eeEEEEecCC---------CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          396 HLVLVDLRPM---------GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       396 ~~~~vd~~~~---------g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      --++++++..         |+++..+.+.|+++||.+.+..         ...|    -.+.|.|-+++++.++.+++.+
T Consensus       489 ~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d---------~~~v----l~l~s~g~~~~~~~~L~~aL~~  555 (715)
T 3n75_A          489 IKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTG---------PYNL----LFLFSIGIDKTKALSLLRALTD  555 (715)
T ss_dssp             TEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEE---------TTEE----EEECCTTCCHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecC---------CCcE----EEEeCCCCCHHHHHHHHHHHHH
Confidence            1123444332         6788899999999999986531         1222    2355667789999999999887


Q ss_pred             HHH
Q 010008          467 GVE  469 (520)
Q Consensus       467 ~l~  469 (520)
                      .-+
T Consensus       556 ~~~  558 (715)
T 3n75_A          556 FKR  558 (715)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.89  E-value=6.1e-22  Score=201.00  Aligned_cols=302  Identities=16%  Similarity=0.135  Sum_probs=205.4

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC---CCCCCCceeeecCCh
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN---LDENKWGVNVQPLSG  168 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg---~~~~~~~~~V~~~sG  168 (520)
                      ..|+|..+++.  +++.|++++...+......+|+..    +   ..+++    +.++++++   ++++    +|.+++|
T Consensus        20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~----~---~~~lr----~~la~~~~~~~~~~~----~v~~~~G   84 (335)
T 1uu1_A           20 DKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYDS----P---DEELI----EKILSYLDTDFLSKN----NVSVGNG   84 (335)
T ss_dssp             CSEEESSCCCSSCCCHHHHHHHHHTCCGGGGGSCCCS----S---CHHHH----HHHHHHHTCSSCCGG----GEEEESS
T ss_pred             cceECCCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCC----c---hHHHH----HHHHHHcCCCCCCHH----HEEEcCC
Confidence            45888888773  689999999887732212344421    1   23444    66778888   7665    4555666


Q ss_pred             H-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 010008          169 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII  247 (520)
Q Consensus       169 s-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi  247 (520)
                      + +|+..++.++   ||+|++. |.|.++..        .+...|.  +++.++++ +++.+|++++     + ++|+|+
T Consensus        85 ~~~al~~~~~~~---gd~Vl~~-p~y~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l-----~-~~~~v~  143 (335)
T 1uu1_A           85 ADEIIYVMMLMF---DRSVFFP-PTYSCYRI--------FAKAVGA--KFLEVPLT-KDLRIPEVNV-----G-EGDVVF  143 (335)
T ss_dssp             HHHHHHHHHHHS---SEEEECS-SSCHHHHH--------HHHHHTC--EEEECCCC-TTSCCCCCCC-----C-TTEEEE
T ss_pred             hHHHHHHHHHHh---CCcEEEC-CCcHHHHH--------HHHHcCC--eEEEeccC-CCCCCCHHHc-----C-CCCEEE
Confidence            5 8999888887   9999999 87755321        2233454  66677776 3467888776     3 789999


Q ss_pred             EcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC--cccEEEeccCccc--CCCCceEEEeeCCC
Q 010008          248 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL--RGPRGGMIFFKKDP  321 (520)
Q Consensus       248 ~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~--~aDiv~~S~hK~l--~GprgG~I~~~~~~  321 (520)
                      ++.|+||+  ..+.+++.++++.+| ++|+|++|.. +....... .+.  ..+++++|+||++  +|.|.|++++++  
T Consensus       144 l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~-~~~~~~~~-~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~--  218 (335)
T 1uu1_A          144 IPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYE-FHGESYVD-FLKKYENLAVIRTFSKAFSLAAQRVGYVVASE--  218 (335)
T ss_dssp             EESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHH-HHCCCCGG-GGGTCSSEEEEEESTTTTTCGGGCCEEEEECH--
T ss_pred             EeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchh-hcchhHHH-HhhhCCCEEEEecchhhcCCcccCeEEEEeCH--
Confidence            88888886  789999999999989 9999999763 22111011 011  3568999999997  577889999976  


Q ss_pred             cchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEE
Q 010008          322 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVD  401 (520)
Q Consensus       322 ~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd  401 (520)
                          ++.+++.....++   +++....+++..+|+.  ...+++..+++.++++.+.+.|.+.|+.+..+  ...+++++
T Consensus       219 ----~~~~~l~~~~~~~---~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~~~~~~  287 (335)
T 1uu1_A          219 ----KFIDAYNRVRLPF---NVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREMGYRITDS--RGNFVFVF  287 (335)
T ss_dssp             ----HHHHHHHHHSCTT---CSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC--CSSEEEEE
T ss_pred             ----HHHHHHHHhcCCC---CcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHCCcEEcCC--CCeEEEEE
Confidence                6766665543322   3444445555555654  12457778888999999999998778775433  23456777


Q ss_pred             ecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          402 LRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       402 ~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      +..  .+..++.+.|.++||.+..          .++++||++.       +++|++++.+.|++
T Consensus       288 ~~~--~~~~~~~~~l~~~gi~v~~----------~~~~iRis~~-------~~~~i~~~~~~l~~  333 (335)
T 1uu1_A          288 MEK--EEKERLLEHLRTKNVAVRS----------FREGVRITIG-------KREENDMILRELEV  333 (335)
T ss_dssp             CCT--HHHHHHHHHHHHHTEEEEE----------ETTEEEEECC-------CHHHHHHHHHHHHC
T ss_pred             CCC--CCHHHHHHHHHHCCEEEEE----------CCCeEEEEeC-------CHHHHHHHHHHHHh
Confidence            642  3456677788889999953          2468999863       25778888887764

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.89  E-value=2.4e-22  Score=210.65  Aligned_cols=350  Identities=16%  Similarity=0.177  Sum_probs=213.1

Q ss_pred             hhccccChH-HHHHHHHHHHHh-hccceEecC---CC----CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHH
Q 010008           72 YSLGEADPE-VCEIITKEKERQ-FKSLELIAS---EN----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELET  142 (520)
Q Consensus        72 ~~l~~~d~~-~~~~~~~e~~~~-~~~i~Lias---en----~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~  142 (520)
                      +++...++. ++.+........ .+.|+|..+   ++    ++++.|.+++...+.+....+|+..   .|   ..++.+
T Consensus        26 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~---~g---~~~lr~   99 (420)
T 4f4e_A           26 SAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPI---DG---IAAYDA   99 (420)
T ss_dssp             TTCCCCCCCHHHHHHHHHHHCCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCT---TC---CHHHHH
T ss_pred             hcCCcCCCChHHHHHHHHHhcCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCC---CC---cHHHHH
Confidence            445556665 455444433322 367888877   32    2348999999988775333445431   12   234443


Q ss_pred             HHHHHHHHHcCC--CCCCCceeeecCChH-HHHHHH--HHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEE
Q 010008          143 LCQKRALAAFNL--DENKWGVNVQPLSGS-PANFEV--YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES  217 (520)
Q Consensus       143 ~a~~~~~~lfg~--~~~~~~~~V~~~sGs-~A~~~~--l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~  217 (520)
                      ...+++....+.  +++.  ++|.+++|+ +|+..+  +.++++|||+|++++|.|.++..        .+...|.  ++
T Consensus       100 ~ia~~l~~~~~~~~~~~~--~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~--------~~~~~g~--~~  167 (420)
T 4f4e_A          100 SVQKLLLGDDSPLIAAGR--VVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRA--------LFDMAGF--EV  167 (420)
T ss_dssp             HHHHHHHCTTCHHHHTTC--EEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHH--------HHHHTTC--CE
T ss_pred             HHHHHhcCCCccccccCc--eEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHH--------HHHHcCC--eE
Confidence            333444332221  2321  134556666 899888  55778999999999998765421        2334555  55


Q ss_pred             EEccc-CCCCCCCCHHHHHHHhhhc--CCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccc-
Q 010008          218 MPYRL-DESTGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV-  288 (520)
Q Consensus       218 v~~~~-d~~~~~iD~d~le~~i~~~--~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-  288 (520)
                      +.+++ +++++.+|++++++.++..  ++++++++.++||+  ..   ++++|+++|+++|+++|+|++| .++...+. 
T Consensus       168 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y-~~~~~~~~~  246 (420)
T 4f4e_A          168 VAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAY-QGFGESIEA  246 (420)
T ss_dssp             EEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC-TTSSSCTTG
T ss_pred             EEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccc-ccccCCcch
Confidence            55555 3356889999999999732  57888899999987  43   4678889999999999999995 55554321 


Q ss_pred             cCCCC------CcccEEEeccCccc--CCCCceEEEeeCCCcchhhHHH----hhcccCCCCCCCCChHHHHHHHHHHHH
Q 010008          289 VADPF------KYCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELES----AINNAVFPGLQGGPHNHTIGGLAVCLK  356 (520)
Q Consensus       289 ~~~p~------~~aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~----~i~~~~~p~~~g~p~~~~iaala~al~  356 (520)
                      ...++      ...++++.|+||++  +|+|.|+++.....   .++.+    .+.........+.+...+. +.+.++.
T Consensus       247 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~  322 (420)
T 4f4e_A          247 DAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGALSIITDS---KDEAARVLSQLKRVIRTNYSNPPTHGGA-IVAAVLA  322 (420)
T ss_dssp             GGHHHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEEEECSS---HHHHHHHHHHHHHHHHTTTSSCCSHHHH-HHHHHHH
T ss_pred             hhHHHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEEEEcCC---HHHHHHHHHHHHHHHhcccCCCCHHHHH-HHHHHhc
Confidence            00011      12458889999987  48889998753210   03322    2222111222233333222 2222332


Q ss_pred             Hh-----cCchhHHHHHHHHHHHHHHHHHHHHC----CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCC
Q 010008          357 HA-----QSPEFKVYQNKVVSNCRALASRLVEL----GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNS  427 (520)
Q Consensus       357 ~~-----~~~~~~~~~~~i~~na~~l~~~L~~~----G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~  427 (520)
                      ..     .....++..+++.++++.+.+.|.+.    |+.+..+. .+.+.|+++     +.+.+.+.|+++||.+.   
T Consensus       323 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~~~~~~-----~~~~~~~~l~~~gI~v~---  393 (420)
T 4f4e_A          323 SPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFINAQ-RGMFSYSGL-----TSAQVDRLREEFGIYAV---  393 (420)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHS-CSSEEECCC-----CHHHHHHHHHHHCEECC---
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeECCC-ccEEEEeCC-----CHHHHHHHHHhCCEEec---
Confidence            21     01234667788889999999999885    66554432 234444333     56778889999999983   


Q ss_pred             CCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          428 VPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       428 ~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                       |+         .||+...+     ++++++++++.|.+++
T Consensus       394 -~~---------~Ris~~~~-----~~~~i~~~~~~l~~~l  419 (420)
T 4f4e_A          394 -ST---------GRICVAAL-----NTRNLDVVANAIAAVL  419 (420)
T ss_dssp             -TT---------SEEEGGGC-----CTTTHHHHHHHHHHHH
T ss_pred             -CC---------CeEEEecC-----CHHHHHHHHHHHHHHh
Confidence             31         28886533     4688999999998775

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.88  E-value=7.8e-21  Score=204.14  Aligned_cols=307  Identities=13%  Similarity=0.087  Sum_probs=196.1

Q ss_pred             hhHHHHHHHHHHHHHHHcCCC--CCCCceeeecCChHHHHHHHHHhhCC--------CC-----C-EEEEcCCCCCcccc
Q 010008          135 EYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGSPANFEVYTAILK--------PH-----D-RIMGLDLPHGGHLS  198 (520)
Q Consensus       135 ~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~sGs~A~~~~l~all~--------pG-----D-~Vl~~~~~~~ghls  198 (520)
                      +...++|..+++++++++|++  .+.   -+...+||+||..++.++.+        +|     | .|+++++.|.+.. 
T Consensus       128 ~~~~~le~~~~~~la~~~g~~~~~~~---~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~-  203 (504)
T 2okj_A          128 PVFVLMEQITLKKMREIVGWSSKDGD---GIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIK-  203 (504)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCSSSCE---EEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHH-
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCCCCC---EEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHH-
Confidence            556788988889999999998  331   23345566999988887742        67     7 7887776654331 


Q ss_pred             ccccccccccccccceE-EEEEcccCCCCCCCCHHHHHHHhhhc-----CCcEEEEcCCCCCC--CCCHHHHHHHHHHhC
Q 010008          199 HGFMTPKRRVSGTSIYF-ESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAGASAYPR--DFDYPRMRQIADAVG  270 (520)
Q Consensus       199 ~g~~~~~~~v~~~g~~~-~~v~~~~d~~~~~iD~d~le~~i~~~-----~pklIi~~~s~~p~--~~d~~~i~~ia~~~g  270 (520)
                             +.+...|.+. +++.++++ +++.+|+++|++++++.     +|++|+++.++|++  ..|+++|+++|+++|
T Consensus       204 -------~~~~~~g~g~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g  275 (504)
T 2okj_A          204 -------KAGAALGFGTDNVILIKCN-ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYN  275 (504)
T ss_dssp             -------HHHHHTTSCGGGEEEECBC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHT
T ss_pred             -------HHHHHcCCCcccEEEEecC-CCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcC
Confidence                   1223334322 44556666 46899999999999763     58899988776654  789999999999999


Q ss_pred             CEEEEechhhcccccccccCCC---CCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhcccCCCCC-------
Q 010008          271 ALLMMDMAHISGLVAASVVADP---FKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGL-------  339 (520)
Q Consensus       271 ~~li~D~Ah~~gli~~~~~~~p---~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~~~~~p~~-------  339 (520)
                      +++++|++|..+......+...   +.++|++++++|||+.+|.+ |+++++++     ++.+.......+.+       
T Consensus       276 ~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~-----~~~~~~~~~~~~~l~~~~~~~  350 (504)
T 2okj_A          276 LWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEK-----GILQGCNQMCAGYLFQPDKQY  350 (504)
T ss_dssp             CEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESST-----THHHHHHCCCCSSSCCSCCSS
T ss_pred             CEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECH-----HHHHHHhcCCCccccCCcccc
Confidence            9999999987665532221112   23689999999999987765 99999874     34332111111111       


Q ss_pred             -----------CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecC--CCCCeeEEEEecCC
Q 010008          340 -----------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSG--GSDNHLVLVDLRPM  405 (520)
Q Consensus       340 -----------~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~--gt~~~~~~vd~~~~  405 (520)
                                 +++.....+ +++.+++.+...+++++.++..++++++.+.|.+ .|++++.+  ...+. +.+...+.
T Consensus       351 ~~~~~~~~~~~~~~rr~~~l-~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~-v~f~~~~~  428 (504)
T 2okj_A          351 DVSYDTGDKAIQCGRHVDIF-KFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTN-VCFWYIPQ  428 (504)
T ss_dssp             CGGGCCGGGSSCSSCBCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSC-EEEEECCG
T ss_pred             cCcCCcccCCCCCCCCccHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEE-EEEEEeCc
Confidence                       111000111 2222233333356788889999999999999988 48998762  22233 33322221


Q ss_pred             ---CCC------------HHHHHHHHhhcCe-EEcCCCCCCCCCCCCCCEEEEccC-CccccCCCHHHHHHHHHHHHHHH
Q 010008          406 ---GID------------GARVEKILDMASI-TLNKNSVPGDKSALVPGGIRIGSP-AMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       406 ---g~~------------~~~~~~~L~~~gI-~v~~~~~Pg~~~~~~~~giRig~~-~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                         +.+            ...+.+.|.+.|+ .+......+     .++.+|+++. ..|    +++|++++.+.|.++.
T Consensus       429 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~-----~~~~lRis~~~~~~----t~edi~~~~~~l~~~~  499 (504)
T 2okj_A          429 SLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGD-----KANFFRMVISNPAA----TQSDIDFLIEEIERLG  499 (504)
T ss_dssp             GGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETT-----EEEEEEECCCCTTC----CHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECC-----ceEEEEEEeCCCCC----CHHHHHHHHHHHHHHH
Confidence               100            2356677777785 443111110     1257999874 444    4899999999998765


Q ss_pred             H
Q 010008          469 E  469 (520)
Q Consensus       469 ~  469 (520)
                      +
T Consensus       500 ~  500 (504)
T 2okj_A          500 Q  500 (504)
T ss_dssp             T
T ss_pred             H
Confidence            4

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.88  E-value=8.6e-22  Score=209.08  Aligned_cols=336  Identities=12%  Similarity=0.103  Sum_probs=208.0

Q ss_pred             CCCCChHHHHHHHhhhhhccCCCCCC-CCCCC------CcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHH
Q 010008          101 SENFTSRAVMEAVGSCLTNKYSEGLP-GKRYY------GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PAN  172 (520)
Q Consensus       101 sen~~~~~V~ea~~s~l~~~y~~G~p-~~ryy------~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~  172 (520)
                      +..+.++.|.+++.......|..+.. ...+.      .+.+...++++.+++++++++|++++    -+...+|+ .+|
T Consensus        88 a~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~----~~~t~g~te~a~  163 (456)
T 2z67_A           88 RIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVH----AIATPISTGMSI  163 (456)
T ss_dssp             ECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCE----EEEESSCHHHHH
T ss_pred             ccccccccccccccCccccccCCCccHHHHHHhhCcccccCcHHHHHHHHHHHHHHHHcCCCCC----EEEeCcHHHHHH
Confidence            44467778888876543222222111 00111      11223567777889999999999864    13334566 567


Q ss_pred             HHHHHhhCC--CCCEEEEcCCCCCccccccccccccccccccceEEEEEcccC--CCCCCCCHHHHHHHh-hh---cCCc
Q 010008          173 FEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD--ESTGLVDYDMLEKTA-IL---FRPK  244 (520)
Q Consensus       173 ~~~l~all~--pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d--~~~~~iD~d~le~~i-~~---~~pk  244 (520)
                      .+++.++..  +||.|++++++|.+..        +.+...|.  +++.+++.  .+++.+|+++|++++ +.   .++.
T Consensus       164 ~~al~~~~~~~~~~~vi~~~~~h~s~~--------~~~~~~G~--~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~  233 (456)
T 2z67_A          164 SLCLSAARKKYGSNVVIYPYASHKSPI--------KAVSFVGM--NMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRP  233 (456)
T ss_dssp             HHHHHHHHHHHCCCEEEEECCCCHHHH--------HHHHHTTC--EEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHhcCCCEEEEECCCcHHHH--------HHHHHcCC--CceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeE
Confidence            766666543  7788998888765421        13344565  44444442  246789999999999 42   3677


Q ss_pred             EEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcc---cccccccCCCCCcccEEEeccCcccCCCCc-eEEEee
Q 010008          245 LIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISG---LVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFK  318 (520)
Q Consensus       245 lIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~g---li~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~  318 (520)
                      +|++..++|++  ..|+++|.++|+++|+++++|+||...   ........... ++|++++|+||++.||.| |+++++
T Consensus       234 ~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~-~~D~~~~s~hK~~~~p~g~G~l~~~  312 (456)
T 2z67_A          234 CVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKY-RVDAVVSSSDKNLLTPIGGGLVYST  312 (456)
T ss_dssp             EEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTS-CCSEEEEEHHHHHCCCSSCEEEEES
T ss_pred             EEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCC-CCCEEEEcCCCCcCCCCCeEEEEEc
Confidence            77777776654  789999999999999999999886532   22111100011 589999999999877654 999996


Q ss_pred             CCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC----CCEEecCCCC
Q 010008          319 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL----GYKLVSGGSD  394 (520)
Q Consensus       319 ~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~----G~~v~~~gt~  394 (520)
                      ++     ++.+.+... +.+...  ... ..++..++..+...++++..++..++++++.+.|.+.    |+.++.+.  
T Consensus       313 ~~-----~~~~~l~~~-~~g~~~--~~~-~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~--  381 (456)
T 2z67_A          313 DA-----EFIKEISLS-YPGRAS--ATP-VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE--  381 (456)
T ss_dssp             CH-----HHHHHHHTT-SCSCBC--SHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC--
T ss_pred             CH-----HHHhhcCcC-CCCCCC--CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC--
Confidence            53     566666432 222211  122 3334445554444567888899999999999999885    87665542  


Q ss_pred             CeeEEEEecCCCCCHHHHHHHHhhcCe---EEcCCC--CCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          395 NHLVLVDLRPMGIDGARVEKILDMASI---TLNKNS--VPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       395 ~~~~~vd~~~~g~~~~~~~~~L~~~gI---~v~~~~--~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                       .++++++...+. ..++.+.|.+.||   .+....  .+|.. .....+++|+++..    +.+++|++++++.|++++
T Consensus       382 -~~v~~~~~~~~~-~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~s~~~----~~t~eeid~~l~~L~~~~  455 (456)
T 2z67_A          382 -SPIASCISVNSD-PVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAI----GVRTEDIVNSVSKLEKIL  455 (456)
T ss_dssp             -CSSEEEEECSSC-HHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCT----TCCHHHHHHHHHHHHTC-
T ss_pred             -CeEEEEEecccH-HHHHHHHHHHcCCCcceEEeecCccccccccccCcchhhhhhhc----CCCHHHHHHHHHHHHHHh
Confidence             344556522221 3567788888876   332000  00111 11124689998664    345899999999987654

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.88  E-value=1.7e-21  Score=202.80  Aligned_cols=331  Identities=12%  Similarity=0.093  Sum_probs=198.9

Q ss_pred             ccceEecCCC--CChHHHHHHHhhhhhccC----CCCCCCCCCCCcchhHHHHHHHHHHHHHHH--cC-CCCCCCceeee
Q 010008           94 KSLELIASEN--FTSRAVMEAVGSCLTNKY----SEGLPGKRYYGGNEYIDELETLCQKRALAA--FN-LDENKWGVNVQ  164 (520)
Q Consensus        94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y----~~G~p~~ryy~g~~~~d~lE~~a~~~~~~l--fg-~~~~~~~~~V~  164 (520)
                      +.|+|..+++  ++++.|++++...+.+..    ..+|+.      .....+++    +.++++  +| ++++    +|.
T Consensus        34 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~------~~g~~~lr----~~la~~l~~g~~~~~----~v~   99 (400)
T 3asa_A           34 TVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGP------DFGLPALR----QKLSEDFYRGFVDAK----EIF   99 (400)
T ss_dssp             CCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCC------TTCCHHHH----HHHHHTTSTTSSCGG----GEE
T ss_pred             ceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCC------CCCCHHHH----HHHHHHHHcCCCCHH----HEE
Confidence            5678877765  468899999988775321    112321      11123444    455666  57 5654    455


Q ss_pred             cCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcC
Q 010008          165 PLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFR  242 (520)
Q Consensus       165 ~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~  242 (520)
                      +++|+ +++.++ ..+++|||+|++.+|.|.++..        .+...|.. .++.++++++ ....|+++    + + +
T Consensus       100 ~~~G~~~al~~~-~~~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~~-~~~~~~~~~~~~~~~~l~~----~-~-~  163 (400)
T 3asa_A          100 ISDGAKVDLFRL-LSFFGPNQTVAIQDPSYPAYLD--------IARLTGAK-EIIALPCLQENAFFPEFPE----D-T-H  163 (400)
T ss_dssp             EESCHHHHHHHH-HHHHCSSCEEEEEESCCHHHHH--------HHHHTTCS-EEEEEECCGGGTTCCCCCT----T-C-C
T ss_pred             EccChHHHHHHH-HHHcCCCCEEEECCCCcHHHHH--------HHHHcCCc-ceEecccchhcCcccChhh----c-c-C
Confidence            57776 777764 4566899999999998765421        22334542 1445555432 23344332    1 3 7


Q ss_pred             CcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCC---Cc-c--cEEEeccCccc--CC
Q 010008          243 PKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KY-C--DVVTTTTHKSL--RG  309 (520)
Q Consensus       243 pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~---~~-a--Div~~S~hK~l--~G  309 (520)
                      +++|+++.++||+  ..+   +++|.++|+++|+++|+|++|. ++...+..+.++   +. .  ++++.|+||++  +|
T Consensus       164 ~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G  242 (400)
T 3asa_A          164 IDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYS-TFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAG  242 (400)
T ss_dssp             CSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTG-GGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTT
T ss_pred             ccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhh-hhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcc
Confidence            8999998888886  555   6678889999999999999965 333322211112   11 3  48899999987  67


Q ss_pred             CCceEEEeeCCCcch--hhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCE
Q 010008          310 PRGGMIFFKKDPVLG--VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYK  387 (520)
Q Consensus       310 prgG~I~~~~~~~~~--~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~  387 (520)
                      .|.|+++++++....  .. .+.+.........++++....++...+|+..   +.++..+++.++++.+.+.|.+.|++
T Consensus       243 lriG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~l~~~L~~~g~~  318 (400)
T 3asa_A          243 IRLGWTVIPQELTYADGHF-VIQDWERFLSTTFNGASIPAQEAGVAGLSIL---PQLEAIHYYRENSDLLRKALLATGFE  318 (400)
T ss_dssp             CCCEEEECCTTCBCTTSCB-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             hheeEEeeChhhccchhhh-HHHHHHHHhccCccCCChHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence            888999998741000  00 2222110000011223444444445566653   34567788888999999999988998


Q ss_pred             EecCCCCCeeEEEE-ecCCCCCHHHHHH-HHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHH
Q 010008          388 LVSGGSDNHLVLVD-LRPMGIDGARVEK-ILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  465 (520)
Q Consensus       388 v~~~gt~~~~~~vd-~~~~g~~~~~~~~-~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~  465 (520)
                      +..+ ....++|++ +. .+++..++.+ +++++||.+..+...   ++..++++||+.  .    .+++++++.++.|.
T Consensus       319 ~~~~-~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gv~v~~g~~f---~~~~~~~iRis~--~----~~~e~i~~~l~~l~  387 (400)
T 3asa_A          319 VFGG-EHAPYLWVKPTQ-ANISDRDLFDFFLREYHIAITPGIGF---GRSGSGFVRFSS--L----GKREDILAACERLQ  387 (400)
T ss_dssp             EEEC-SSSSEEEEECCC-TTCCTTTHHHHHHHHHSEECEEGGGG---CGGGTTCEEEEC--C----SCHHHHHHHHHHHH
T ss_pred             eeCC-CCceEEEEeccC-CCCCHHHHHHHHHHhCCEEEeChhHh---CCCCCCEEEEEe--e----CCHHHHHHHHHHHH
Confidence            8754 234567877 53 3445544544 456779998543211   112356899983  2    34899999999998


Q ss_pred             HHHHH
Q 010008          466 EGVEI  470 (520)
Q Consensus       466 ~~l~~  470 (520)
                      ++++.
T Consensus       388 ~~~~~  392 (400)
T 3asa_A          388 MAPAL  392 (400)
T ss_dssp             C----
T ss_pred             HHHHh
Confidence            87753

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.88  E-value=2.9e-21  Score=208.14  Aligned_cols=309  Identities=13%  Similarity=0.052  Sum_probs=195.6

Q ss_pred             chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC-------C-CCC------EEEEcCCCCCccccc
Q 010008          134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL-------K-PHD------RIMGLDLPHGGHLSH  199 (520)
Q Consensus       134 ~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all-------~-pGD------~Vl~~~~~~~ghls~  199 (520)
                      .+...++|..+++++++++|++.+.   -+...+||+||..++.++.       + +||      +|++.+..|.+..  
T Consensus       143 s~~~~~le~~~~~~la~l~g~~~~~---~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~--  217 (515)
T 2jis_A          143 APVFVLMEEEVLRKLRALVGWSSGD---GIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQ--  217 (515)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCSSCE---EEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHH--
T ss_pred             chHHHHHHHHHHHHHHHHhCCCCCC---eEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHH--
Confidence            3556788888999999999998531   2334556699998887763       2 686      7888877654432  


Q ss_pred             cccccccccccccceE-EEEEcccCCCCCCCCHHHHHHHhhhc-----CCcEEEEcCCCCCC--CCCHHHHHHHHHHhCC
Q 010008          200 GFMTPKRRVSGTSIYF-ESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAGASAYPR--DFDYPRMRQIADAVGA  271 (520)
Q Consensus       200 g~~~~~~~v~~~g~~~-~~v~~~~d~~~~~iD~d~le~~i~~~-----~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~  271 (520)
                            +.+...|.+. +++.++++ +++.+|+++|++++++.     +|++|+++.++|++  ..|+++|+++|+++|+
T Consensus       218 ------~~~~~~g~g~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~  290 (515)
T 2jis_A          218 ------KGAAFLGLGTDSVRVVKAD-ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGL  290 (515)
T ss_dssp             ------HHHHHTTSCGGGEEEECBC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTC
T ss_pred             ------HHHHHcCCCCCcEEEEecC-CCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC
Confidence                  1223334322 44555666 46899999999999763     48899888776654  7899999999999999


Q ss_pred             EEEEechhhcccccccccCCCC---CcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhcc----cCCC------
Q 010008          272 LLMMDMAHISGLVAASVVADPF---KYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINN----AVFP------  337 (520)
Q Consensus       272 ~li~D~Ah~~gli~~~~~~~p~---~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~~----~~~p------  337 (520)
                      ++++|++|..+....+.+...+   .++|++++++|||+.+|.+ |+++++++.    ++.++...    ..+.      
T Consensus       291 ~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~----~~~~~~~~~~~~yl~~~~~~~~  366 (515)
T 2jis_A          291 WLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTS----NLLKRCHGSQASYLFQQDKFYD  366 (515)
T ss_dssp             EEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCS----CHHHHHHCC---------CCSC
T ss_pred             eEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChH----HHHHHHhcCCchhccCCccccc
Confidence            9999999877765433221112   3689999999999988876 999998730    13222100    0000      


Q ss_pred             --------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecCCCCCeeEEEEecCC---
Q 010008          338 --------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLVLVDLRPM---  405 (520)
Q Consensus       338 --------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~gt~~~~~~vd~~~~---  405 (520)
                              ..+.+.....+ ++..+++.+...++++..++..++++++.+.|.+ .|++++.+...+. +.+...+.   
T Consensus       367 ~~~~~~~~~~~~~rr~~al-~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~-v~f~~~p~~~~  444 (515)
T 2jis_A          367 VALDTGDKVVQCGRRVDCL-KLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVN-VCFWFVPPSLR  444 (515)
T ss_dssp             GGGCCGGGCSCSSCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSE-EEEEECCGGGT
T ss_pred             ccCCCCCCCCCCCCcccHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeE-EEEEEeCcccc
Confidence                    00111100011 2222333333356788889999999999999988 4899876432233 33322221   


Q ss_pred             CC-CH----H-------HHHHHHhhcCeEE-cCCCCCCCCCCCCCCEEEEcc-CCccccCCCHHHHHHHHHHHHHHHH
Q 010008          406 GI-DG----A-------RVEKILDMASITL-NKNSVPGDKSALVPGGIRIGS-PAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       406 g~-~~----~-------~~~~~L~~~gI~v-~~~~~Pg~~~~~~~~giRig~-~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +. +.    .       .+.+.|.+.|+.+ .....++     ..+.+|+++ +..|+    ++|++++++.|.+++.
T Consensus       445 ~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~-----~~~~lRis~~~~~~t----~edid~~~~~l~~~~~  513 (515)
T 2jis_A          445 GKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGT-----RGNFFRVVVANSALT----CADMDFLLNELERLGQ  513 (515)
T ss_dssp             TCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETT-----EEEEEEEECCCTTCC----HHHHHHHHHHHHHHHT
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECC-----ceEEEEEEeCCCCCC----HHHHHHHHHHHHHHHh
Confidence            11 10    1       2455666778654 2110011     235799988 55554    8999999999987653

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.88  E-value=1e-21  Score=204.19  Aligned_cols=324  Identities=12%  Similarity=0.031  Sum_probs=209.5

Q ss_pred             ccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeee--cCChHHH
Q 010008           94 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQ--PLSGSPA  171 (520)
Q Consensus        94 ~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~--~~sGs~A  171 (520)
                      ..+++.+++..+|+.|++++..... .. .++.  +++  ..+ .++.+.+++++++++|++.++   +|.  ..+|++|
T Consensus        40 ~~~~~~~~~~~~~~~v~~a~~~~~~-~~-~~~~--~~~--~~~-~~~~~~~~~~la~~~g~~~~~---~i~~~t~g~t~a  109 (398)
T 2fyf_A           40 RDGRFGSGPSKVRLEQLQTLTTTAA-AL-FGTS--HRQ--APV-KNLVGRVRSGLAELFSLPDGY---EVILGNGGATAF  109 (398)
T ss_dssp             SSCBCCSSSCCCCHHHHHGGGTTTT-TT-TTSC--TTS--HHH-HHHHHHHHHHHHHHTTCCTTC---EEEEEETCHHHH
T ss_pred             CCccccCCCCCCCHHHHHHHhhcCC-Cc-cCcC--cCC--HHH-HHHHHHHHHHHHHHhCCCCCc---eEEEeCCchhHH
Confidence            4677888888899999999976310 10 0110  111  222 233345678999999997421   333  3556699


Q ss_pred             HHHHHHhhCCCC-CEEEEcCCCCCccccccccccccccccc--cceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEE
Q 010008          172 NFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGT--SIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA  248 (520)
Q Consensus       172 ~~~~l~all~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~--g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~  248 (520)
                      +.+++.++++|| |.|  ....|+.    ...   ......  |.  +++.++++ ++..+|.     .+++ +||+|++
T Consensus       110 l~~~~~~l~~~gv~~v--~~~~~~~----~~~---~~~~~~~~g~--~~~~v~~~-~g~~~~~-----~i~~-~~~~v~~  171 (398)
T 2fyf_A          110 WDAAAFGLIDKRSLHL--TYGEFSA----KFA---SAVSKNPFVG--EPIIITSD-PGSAPEP-----QTDP-SVDVIAW  171 (398)
T ss_dssp             HHHHHHHTCSSCEEEE--ECSHHHH----HHH---HHHHHCTTSC--CCEEEECC-TTCCCCC-----CCCT-TCSEEEE
T ss_pred             HHHHHHHhcCCCeEEE--eCCHHHH----HHH---HHHHHhCCCC--ceEEEecC-CCCCCCc-----cccC-CCCEEEE
Confidence            999999999998 444  2222210    000   011112  33  33444454 2333332     1444 7999998


Q ss_pred             cCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCC-ceEEEeeCCCcchh
Q 010008          249 GASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPR-GGMIFFKKDPVLGV  325 (520)
Q Consensus       249 ~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gpr-gG~I~~~~~~~~~~  325 (520)
                      +.++||+  ..|+++|.++   +|++|++|++|..|....     .+..+|++++|+||+++++. .|++++++      
T Consensus       172 ~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~~-----~~~~~di~~~s~sK~~~~~gg~g~l~~~~------  237 (398)
T 2fyf_A          172 AHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLPV-----DIAETDAYYFAPQKNFASDGGLWLAIMSP------  237 (398)
T ss_dssp             ESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSCC-----CGGGCSEEEECTTSTTCSCSSEEEEEECH------
T ss_pred             eCcCCCcceecchHHhhhh---cCCeEEEEeccccCCccc-----CcccCcEEEEecCcccCCCCceEEEEECH------
Confidence            8887776  7788888777   899999999987664321     22347999999999997663 48888887      


Q ss_pred             hHHHhhccc---------CC-----------CCCCCCChHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHHHHHC
Q 010008          326 ELESAINNA---------VF-----------PGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASRLVEL  384 (520)
Q Consensus       326 ~l~~~i~~~---------~~-----------p~~~g~p~~~~iaala~al~~~~~~~-~~~~~~~i~~na~~l~~~L~~~  384 (520)
                      ++.+++...         .+           ....++++...++++..+++.+...+ +++..+++.++++.+.+.|.+.
T Consensus       238 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~  317 (398)
T 2fyf_A          238 AALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQER  317 (398)
T ss_dssp             HHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHc
Confidence            555444210         00           12235677777777777887655444 6788889999999999999886


Q ss_pred             -CCEEec--C-CCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHH
Q 010008          385 -GYKLVS--G-GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAI  460 (520)
Q Consensus       385 -G~~v~~--~-gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~l  460 (520)
                       |+++..  + +..++++++++. .+++..++.+.|.+.||.+..    |.. ....+.|||++...+    +++|++++
T Consensus       318 ~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~gI~v~~----g~~-~~~~~~iRis~~~~~----t~e~i~~~  387 (398)
T 2fyf_A          318 PYTTPFVTDPGLRSQVVGTIDFV-DDVDAGTVAKILRANGIVDTE----PYR-KLGRNQLRVAMFPAV----EPDDVSAL  387 (398)
T ss_dssp             TTEEESCCSGGGBCSSEEEEEEC-TTSCHHHHHHHHHHTTCBCCS----CCT-TTCSSEEEEECCTTS----CHHHHHHH
T ss_pred             CCceeccCChhhcCCcEEEEECC-CCCCHHHHHHHHHHCCcEEec----Ccc-cCCCCEEEEEecCCC----CHHHHHHH
Confidence             888774  2 112336777774 356788888888888999853    211 123578999987544    48999999


Q ss_pred             HHHHHHHHH
Q 010008          461 ADFIHEGVE  469 (520)
Q Consensus       461 a~~i~~~l~  469 (520)
                      ++.|+++++
T Consensus       388 ~~~l~~~l~  396 (398)
T 2fyf_A          388 TECVDWVVE  396 (398)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.88  E-value=1.2e-21  Score=203.48  Aligned_cols=348  Identities=15%  Similarity=0.171  Sum_probs=205.8

Q ss_pred             ccccChH-HHHHHHHHHHHhh-ccceEecCC--C-----CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHH
Q 010008           74 LGEADPE-VCEIITKEKERQF-KSLELIASE--N-----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLC  144 (520)
Q Consensus        74 l~~~d~~-~~~~~~~e~~~~~-~~i~Liase--n-----~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a  144 (520)
                      +....+. ++.+......... +.|+|..++  +     ++.+.|.+++...+.+....+|+.   ..|   ..++.+..
T Consensus         7 ~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~---~~g---~~~lr~~i   80 (401)
T 7aat_A            7 VEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLP---IAG---LADFTRAS   80 (401)
T ss_dssp             CCCCCCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCC---TTC---CHHHHHHH
T ss_pred             CCCCCCChhHHHHHHHhhCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCC---CCC---CHHHHHHH
Confidence            3444443 4554433332222 358887655  2     223578888887665333344543   122   23444444


Q ss_pred             HHHHHHHcCCC--CCCCceeeecCChH-HHHHHHHHhh---CCCCCEEEEcCCCCCccccccccccccccccccceEEEE
Q 010008          145 QKRALAAFNLD--ENKWGVNVQPLSGS-PANFEVYTAI---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESM  218 (520)
Q Consensus       145 ~~~~~~lfg~~--~~~~~~~V~~~sGs-~A~~~~l~al---l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v  218 (520)
                      .+++.+.+|.+  ++++  .+..|+|+ +|+..++.++   ++|||+|++++|.|.++..        .+...|.  +++
T Consensus        81 a~~~~~~~~~~~~~~~i--~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~--------~~~~~g~--~~~  148 (401)
T 7aat_A           81 AELALGENSEAFKSGRY--VTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTP--------IFRDAGL--QLQ  148 (401)
T ss_dssp             HHHHHCTTCHHHHTTCE--EEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHH--------HHHHTTC--EEE
T ss_pred             HHHhcCCCccccccCce--EEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHH--------HHHHcCC--eeE
Confidence            44554444432  4422  11225555 9999877665   4999999999998876532        2334565  566


Q ss_pred             EcccC-CCCCCCCHHHHHHHhhhc--CCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhccccccccc-
Q 010008          219 PYRLD-ESTGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVV-  289 (520)
Q Consensus       219 ~~~~d-~~~~~iD~d~le~~i~~~--~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-  289 (520)
                      .++++ ++++.+|++++++.++..  ++++++++.++||+  .+   ++++|.++|+++|+++++|++|. ++...+.. 
T Consensus       149 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~-~~~~~~~~~  227 (401)
T 7aat_A          149 AYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQ-GFASGDINR  227 (401)
T ss_dssp             EEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TTTTSCHHH
T ss_pred             eeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccc-cccCCCccc
Confidence            66653 236889999887776532  57889999999987  33   47788899999999999999953 43333210 


Q ss_pred             -CCCC------CcccEEEeccCccc--CCCCceEEEeeCCCcchhh----HHHhhcccCCCCCCCCChHHHHHHHHHHHH
Q 010008          290 -ADPF------KYCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLK  356 (520)
Q Consensus       290 -~~p~------~~aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~----l~~~i~~~~~p~~~g~p~~~~iaala~al~  356 (520)
                       ..++      ....+++.|+||++  +|+|.|+++......   +    +...+.....+...+.+ ....++.+.++.
T Consensus       228 ~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~  303 (401)
T 7aat_A          228 DAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDA---EEAKRVESQLKILIRPMYSNPP-MNGARIASLILN  303 (401)
T ss_dssp             HTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSH---HHHHHHHHHHHHHHHHHHSSCC-HHHHHHHHHHHH
T ss_pred             cHHHHHHHHhcCCcEEEEecCCcccccccCceEEEEEEeCCH---HHHHHHHHHHHHHHHhccCCCC-hHHHHHHHHHhC
Confidence             0001      12347889999987  688889988733100   2    22333222112222222 222222222232


Q ss_pred             H--hc---CchhHHHHHHHHHHHHHHHHHHHHCC----CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCC
Q 010008          357 H--AQ---SPEFKVYQNKVVSNCRALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNS  427 (520)
Q Consensus       357 ~--~~---~~~~~~~~~~i~~na~~l~~~L~~~G----~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~  427 (520)
                      .  +.   ....++..+++.++++.+.+.|.+.|    +.+..+. .+.+.|++     ++.+.+..+|+++||.+.   
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~ll~~~gi~v~---  374 (401)
T 7aat_A          304 TPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQ-IGMFCFTG-----LKPEQVERLTKEFSIYMT---  374 (401)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHC-CSSEEECC-----CCHHHHHHHHHHHCEECC---
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecCC-cceEEecC-----CCHHHHHHHHHhCCEecc---
Confidence            1  00   12345667788889999999998865    4433321 23444543     346778778899999983   


Q ss_pred             CCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          428 VPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       428 ~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                       |         ++||++..+|     ++|++++++.|++++
T Consensus       375 -~---------~~Ris~~~~~-----~~~i~~~~~~l~~~~  400 (401)
T 7aat_A          375 -K---------DGRISVAGVA-----SSNVGYLAHAIHQVT  400 (401)
T ss_dssp             -T---------TCEEEGGGCC-----TTTHHHHHHHHHHHH
T ss_pred             -C---------CCeEEeccCC-----hhhHHHHHHHHHHHh
Confidence             2         3699876544     467999999998765

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.88  E-value=1.7e-21  Score=203.69  Aligned_cols=347  Identities=16%  Similarity=0.160  Sum_probs=212.8

Q ss_pred             hhccccChH-HHHHHHHHHHHh-hccceEecCC----C---CChHHHHHHHhhhh-hccCCCCCCCCCCCCcchhHHHHH
Q 010008           72 YSLGEADPE-VCEIITKEKERQ-FKSLELIASE----N---FTSRAVMEAVGSCL-TNKYSEGLPGKRYYGGNEYIDELE  141 (520)
Q Consensus        72 ~~l~~~d~~-~~~~~~~e~~~~-~~~i~Liase----n---~~~~~V~ea~~s~l-~~~y~~G~p~~ryy~g~~~~d~lE  141 (520)
                      ..+....++ ++.+..+.+... .+.|+|..++    +   ++++.|.+|+. .+ ......+|+.   ..|.   .++.
T Consensus         6 ~~~~~~~~~~i~~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~---~~G~---~~lr   78 (405)
T 3k7y_A            6 SSLENIEVDNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLL---GNGT---EDFS   78 (405)
T ss_dssp             GGCCCCCCCHHHHHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCT---TSSC---HHHH
T ss_pred             hcCCCCCCChHHHHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCC---CCCc---HHHH
Confidence            446666665 566655443322 3668998764    2   36789999876 43 2222334433   1232   3555


Q ss_pred             HHHHHHHHHHcCCCC-CCCceeeecCChH-HHHHHHHHhhCC--CCCEEEEcCCCCCccccccccccccccccccceEEE
Q 010008          142 TLCQKRALAAFNLDE-NKWGVNVQPLSGS-PANFEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES  217 (520)
Q Consensus       142 ~~a~~~~~~lfg~~~-~~~~~~V~~~sGs-~A~~~~l~all~--pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~  217 (520)
                      +...+++.+..+... +++ ++|..|+|+ +|+..++.++++  | |+|++++|.|.++..        .+...|.  ++
T Consensus        79 ~aia~~~~~~~~~~~~~~~-i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~--------~~~~~g~--~~  146 (405)
T 3k7y_A           79 TLTQNLIFGNNSKYIEDKK-ICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVN--------MIESRGF--NL  146 (405)
T ss_dssp             HHHHHHHHCSSCTTTTTTC-EEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHH--------HHHTTTC--EE
T ss_pred             HHHHHHHcCCCCccccccc-eEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHH--------HHHHcCC--eE
Confidence            555556544443321 112 234456666 899999988877  9 999999998865531        3445565  67


Q ss_pred             EEccc-CCCCCCCCHHHHHHHhhhc-CCcEEEEcCC-CCCC--CC---CHHHHHHHHHHhCCEEEEechhhccccccccc
Q 010008          218 MPYRL-DESTGLVDYDMLEKTAILF-RPKLIIAGAS-AYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVV  289 (520)
Q Consensus       218 v~~~~-d~~~~~iD~d~le~~i~~~-~pklIi~~~s-~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~  289 (520)
                      +.+++ +++++.+|++++++.+++. ++++|+++.+ +||+  .+   .+++|.++|+++|+++|+|++ |.++.+.+..
T Consensus       147 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~-Y~~l~~~~~~  225 (405)
T 3k7y_A          147 KYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIA-YQGFGHTNLE  225 (405)
T ss_dssp             EEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEES-CTTTSSSSTT
T ss_pred             EEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecC-cccccCCCcc
Confidence            77766 4446889999999998753 4678888765 7997  44   467788899999999999998 4566543211


Q ss_pred             --CCC---C-C-c-ccEEEeccCccc--CCCCceEEEee--CCCcchhhHHHhh----cccCCCCCCCCChHHHHHHHHH
Q 010008          290 --ADP---F-K-Y-CDVVTTTTHKSL--RGPRGGMIFFK--KDPVLGVELESAI----NNAVFPGLQGGPHNHTIGGLAV  353 (520)
Q Consensus       290 --~~p---~-~-~-aDiv~~S~hK~l--~GprgG~I~~~--~~~~~~~~l~~~i----~~~~~p~~~g~p~~~~iaala~  353 (520)
                        ..+   + . + --+++.|++|++  +|+|.||+++.  +.     ++.+++    .......... ++....++.+.
T Consensus       226 ~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~-~~~~~q~~~~~  299 (405)
T 3k7y_A          226 EDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQ-----EEKKIVFNNLCFIVRKFYSS-PVIHTNRILCQ  299 (405)
T ss_dssp             GGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEEEEECSSH-----HHHHHHHHHHHHHHHTTTSS-CCHHHHHHHHH
T ss_pred             cchHHHHHHHhcCCcEEEEeeCCccCCCccccceEEEEEeCCH-----HHHHHHHHHHHHHHhcccCC-CcHHHHHHHHH
Confidence              001   1 1 1 127789999986  69999998652  21     333332    2211111222 23233223333


Q ss_pred             HHHHh--c---CchhHHHHHHHHHHHHHHHHHHH----HCC----CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcC
Q 010008          354 CLKHA--Q---SPEFKVYQNKVVSNCRALASRLV----ELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAS  420 (520)
Q Consensus       354 al~~~--~---~~~~~~~~~~i~~na~~l~~~L~----~~G----~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~g  420 (520)
                      ++..-  .   ..+.+.+.+++.++++.+.+.|.    +.|    +.+..+ ..+.++|+++.     .+.+. .|+++|
T Consensus       300 ~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p-~gg~f~~~~l~-----~~~~~-~L~~~g  372 (405)
T 3k7y_A          300 LLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKK-QRGLFSFVPLL-----AKIAE-HLKTHH  372 (405)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSS-CCSSEEECGGG-----GGGTT-TTTTTT
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccC-CceEEEecCCC-----HHHHH-HHHHCC
Confidence            34321  0   11235667778999999999998    766    344433 23455565543     23343 458899


Q ss_pred             eEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          421 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       421 I~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      |.+    .||        + ||+...     .++++++++++.|+++++
T Consensus       373 V~v----~p~--------~-Ris~a~-----~~~~~i~~~~~~i~~~~~  403 (405)
T 3k7y_A          373 IYI----INN--------G-RINVSG-----ITKNNVDYIADKICLSLS  403 (405)
T ss_dssp             EEC----CTT--------S-EEEGGG-----CCTTHHHHHHHHHHHHHH
T ss_pred             Eee----cCC--------C-eEEEec-----cCHHHHHHHHHHHHHHHh
Confidence            998    443        2 998653     457999999999999875

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.88  E-value=1.9e-20  Score=192.42  Aligned_cols=310  Identities=15%  Similarity=0.126  Sum_probs=194.9

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHh---hC-
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA---IL-  180 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~a---ll-  180 (520)
                      .++.+++++...+.+.   +.+..+| . .+...++    ++++++++|++ ++   .+...+|++|+.+++.+   +. 
T Consensus        45 ~~~~v~~a~~~~~~~~---~~~~~~y-~-~~~~~~l----~~~la~~~g~~-~~---v~~~~g~t~a~~~~~~~~~~~~~  111 (375)
T 2eh6_A           45 AYPKLTEALKEQVEKL---LHVSNLY-E-NPWQEEL----AHKLVKHFWTE-GK---VFFANSGTESVEAAIKLARKYWR  111 (375)
T ss_dssp             SCHHHHHHHHHHHHHC---SCCCTTB-C-CHHHHHH----HHHHHHTSSSC-EE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhc---cccCccc-C-CHHHHHH----HHHHHhhcCCC-Ce---EEEeCchHHHHHHHHHHHHHHhc
Confidence            6899999998887542   1222233 2 2333334    37788899983 32   23345556999988865   45 


Q ss_pred             --CCC-CEEEEcCCCCCccccccccccccccccccce---EEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC
Q 010008          181 --KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY---FESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP  254 (520)
Q Consensus       181 --~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~---~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p  254 (520)
                        +|| |+|++.++.|.+............+...+..   -....++      .+|+++|++++++ ++++|+++.++||
T Consensus       112 ~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~-~~~~v~~~~~~~~  184 (375)
T 2eh6_A          112 DKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAK------LNDIDSVYKLLDE-ETAGIIIEVIQGE  184 (375)
T ss_dssp             HTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEEC------TTCHHHHHTTCCT-TEEEEEECSEETT
T ss_pred             cCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCC------CchHHHHHHHhcC-CeEEEEEeCccCC
Confidence              889 9999999987544211100000000000100   0011111      2589999999986 8999999888877


Q ss_pred             C--CCC----HHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEeccCcccC-CCCceEEEeeCCCcch
Q 010008          255 R--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDPVLG  324 (520)
Q Consensus       255 ~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S~hK~l~-GprgG~I~~~~~~~~~  324 (520)
                      +  ..+    +++|.++|+++|+++|+|++|. ++...+...  ..+. ..|++++|  |++. |+|.|++++++     
T Consensus       185 tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~d~~s~S--K~~~~g~~~G~~~~~~-----  256 (375)
T 2eh6_A          185 GGVNEASEDFLSKLQEICKEKDVLLIIDEVQT-GIGRTGEFYAYQHFNLKPDVIALA--KGLGGGVPIGAILARE-----  256 (375)
T ss_dssp             TTSEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSCCEEEEEEH-----
T ss_pred             CCCcCCCHHHHHHHHHHHHHhCCEEEEecccc-CCCCCCcchhhhhcCCCCCEEEEc--ccccCCCCeEEEEEcH-----
Confidence            4  447    9999999999999999999976 332222100  0111 37888555  9884 45679999987     


Q ss_pred             hhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecC
Q 010008          325 VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRP  404 (520)
Q Consensus       325 ~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~  404 (520)
                       ++.+.+.........+++.....++ ..+|+...     ++.+++.++++.+.+.|.+.+...+.+  ...++++++..
T Consensus       257 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~-----~~~~~~~~~~~~l~~~L~~~~~~~~~~--~g~~~~~~~~~  327 (375)
T 2eh6_A          257 -EVAQSFTPGSHGSTFGGNPLACRAG-TVVVDEVE-----KLLPHVREVGNYFKEKLKELGKGKVKG--RGLMLGLELER  327 (375)
T ss_dssp             -HHHTTCCTTSCCCSSTTCHHHHHHH-HHHHHHHH-----HHHHHHHHHHHHHHHHHHHTTSSEEEE--ETTEEEEECSS
T ss_pred             -HHHhhhcCCCCCCCCCCCHHHHHHH-HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCceE--EEEEEEEEEcC
Confidence             6766665532333344444444433 33555432     567788888999999998866533332  24566777743


Q ss_pred             CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          405 MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       405 ~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                         +..++.+.|.+.||.+..    +     .++++||+.+..    .+++|++++++.|+++
T Consensus       328 ---~~~~~~~~l~~~gi~~~~----~-----~~~~iRi~~~~~----~~~~~i~~~~~~l~~~  374 (375)
T 2eh6_A          328 ---ECKDYVLKALEKGLLINC----T-----AGKVLRFLPPLI----IQKEHIDRAISVLREI  374 (375)
T ss_dssp             ---CCHHHHHHHHHTTEECEE----E-----TTTEEEECCCTT----CCHHHHHHHHHHHHHH
T ss_pred             ---cHHHHHHHHHHCCCEEec----C-----CCCEEEEECCCC----CCHHHHHHHHHHHHHh
Confidence               356677778789999843    2     257899997643    3589999999998765

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.88  E-value=2.4e-21  Score=207.09  Aligned_cols=331  Identities=12%  Similarity=0.015  Sum_probs=210.2

Q ss_pred             hHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCC------ceeeecCChHHHHHHHHHhh
Q 010008          106 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKW------GVNVQPLSGSPANFEVYTAI  179 (520)
Q Consensus       106 ~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~------~~~V~~~sGs~A~~~~l~al  179 (520)
                      +..+.+++.+.+ |.+..+      |...+...++|+.+++++++++|++.+..      ...+.+.+||+||+.++.++
T Consensus        87 ~~~~~~~~~~~~-n~~~~~------~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~  159 (486)
T 1js3_A           87 PAMLADMLCGAI-GCIGFS------WAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAA  159 (486)
T ss_dssp             HHHHHHHHHHHH-CCCCSS------GGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-CcCccc------cccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHH
Confidence            345677777665 333222      33345678899999999999999985310      11245566779999888776


Q ss_pred             CCC---------CC--------E--EEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh
Q 010008          180 LKP---------HD--------R--IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL  240 (520)
Q Consensus       180 l~p---------GD--------~--Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~  240 (520)
                      .++         ||        +  |+++++.|.+..        +.+...|.  +++.++++ +++.+|+++|++++++
T Consensus       160 ~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~--------~~~~~~G~--~v~~v~~d-~~~~~d~~~L~~~i~~  228 (486)
T 1js3_A          160 RTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVE--------RAGLIGGV--KLKAIPSD-GKFAMRASALQEALER  228 (486)
T ss_dssp             HHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHH--------HHHHHHTC--EEEEECCC-TTSCCCHHHHHHHHHH
T ss_pred             HHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHH--------HHHHhCCC--ceEEeecC-CCCCCCHHHHHHHHHH
Confidence            321         43        3  667777654321        23445565  56666776 5789999999999976


Q ss_pred             cCC------cEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC---CCCCcccEEEeccCcccCC
Q 010008          241 FRP------KLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA---DPFKYCDVVTTTTHKSLRG  309 (520)
Q Consensus       241 ~~p------klIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~---~p~~~aDiv~~S~hK~l~G  309 (520)
                       ++      .+|+++.++|++  ..|+++|.++|+++|+++++|+||..+........   ..+.++|++++++||++.+
T Consensus       229 -~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~  307 (486)
T 1js3_A          229 -DKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLV  307 (486)
T ss_dssp             -HHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSC
T ss_pred             -HHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCC
Confidence             44      377777666554  78999999999999999999999876654332111   1234689999999999977


Q ss_pred             CCc-eEEEeeCCCcchhhH-HHhhccc---CCC--------------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHH
Q 010008          310 PRG-GMIFFKKDPVLGVEL-ESAINNA---VFP--------------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV  370 (520)
Q Consensus       310 prg-G~I~~~~~~~~~~~l-~~~i~~~---~~p--------------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i  370 (520)
                      |.+ |+++++++     .+ .+.+...   ...              ..+++... ...++..+++.+...+++++.++.
T Consensus       308 p~~~G~l~~~~~-----~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~-~~~~~~~al~~~g~~g~~~~~~~~  381 (486)
T 1js3_A          308 NFDCSAMWVKRR-----TDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRF-RSLKMWFVFRMYGVKGLQAYIRKH  381 (486)
T ss_dssp             CSSCEEEEESCH-----HHHHGGGC------------CCSCCCGGGSSSCSCCCC-THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcceEEEEEeCH-----HHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCch-hHHHHHHHHHHHhHHHHHHHHHHH
Confidence            644 99999873     32 3333110   000              00111111 123444455544445678889999


Q ss_pred             HHHHHHHHHHHHHC-CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccc
Q 010008          371 VSNCRALASRLVEL-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTT  449 (520)
Q Consensus       371 ~~na~~l~~~L~~~-G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt  449 (520)
                      .++++++.+.|.+. |++++.+. ..+++.+.+.+......++.+.|.+.|+.+..   |+.  ....+.+|+++...  
T Consensus       382 ~~~a~~l~~~L~~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~---~~~--~~~~~~lRi~~~~~--  453 (486)
T 1js3_A          382 VQLSHEFEAFVLQDPRFEVCAEV-TLGLVCFRLKGSDGLNEALLERINSARKIHLV---PCR--LRGQFVLRFAICSR--  453 (486)
T ss_dssp             HHHHHHHHHHHHHCTTEEECSCC-CSSEEEEEESSCHHHHHHHHHHHHHHTSCBCE---EEE--ETTEEEEEEECCCT--
T ss_pred             HHHHHHHHHHHhcCCCeEEeCCC-ceeEEEEEecChHHHHHHHHHHHHhcCCEEEE---EEE--ECCEEEEEEEeCCC--
Confidence            99999999999884 89987542 23444444432110135677777777765311   111  01246899985322  


Q ss_pred             cCCCHHHHHHHHHHHHHHHHH
Q 010008          450 RGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       450 ~g~~~~d~~~la~~i~~~l~~  470 (520)
                       ..+++|++++.+.|.++++.
T Consensus       454 -~~t~~di~~~~~~l~~~~~~  473 (486)
T 1js3_A          454 -KVESGHVRLAWEHIRGLAAE  473 (486)
T ss_dssp             -TCCHHHHHHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHHHHH
Confidence             23589999999999888754

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.87  E-value=6.2e-21  Score=206.40  Aligned_cols=341  Identities=14%  Similarity=0.150  Sum_probs=208.3

Q ss_pred             cceEecCCC-CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHc-C-CCCCCCceeeecCChH-H
Q 010008           95 SLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF-N-LDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        95 ~i~Liasen-~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lf-g-~~~~~~~~~V~~~sGs-~  170 (520)
                      .|+|..++. ..++.+++++...+..   .+|+     .......++++...+++.+.+ + ++.+.. -+|.+++|+ +
T Consensus       105 ~i~l~~g~~~~~~~~~v~a~~~~~~~---~~y~-----~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~-~~i~~t~G~t~  175 (533)
T 3f6t_A          105 AVNYCHTELGLNRDKVVAEWVNGAVA---NNYP-----VPDRCLVNTEKIINYFLQELSYKDANLAEQ-TDLFPTEGGTA  175 (533)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHT---CSCC-----SSSSCCHHHHHHHHHHHHHHHTTTCCCGGG-EEEEEEEHHHH
T ss_pred             heeccCCCCCcCCcHHHHHHHHHHHh---CCCC-----CCcccHHHHHHHHHHHHHHhcCCCCCCCCc-ceEEEECCHHH
Confidence            355554442 3466776666555542   1222     111223466666667776662 3 332211 255667776 8


Q ss_pred             HHHHHHHh-----hCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccC---CCCCCCCHHHHHHHhhhcC
Q 010008          171 ANFEVYTA-----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD---ESTGLVDYDMLEKTAILFR  242 (520)
Q Consensus       171 A~~~~l~a-----ll~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d---~~~~~iD~d~le~~i~~~~  242 (520)
                      |+..++.+     +++|||+|++++|.|.++..        .+...|.  .++.++++   .+++.+|+++|++++++ +
T Consensus       176 al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~~~d~~~l~~~l~~-~  244 (533)
T 3f6t_A          176 AIVYAFHSLAENHLLKKGDKIAINEPIFTPYLR--------IPELKDY--ELVEVDLHSYEKNDWEIEPNEIEKLKDP-S  244 (533)
T ss_dssp             HHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHT--------SGGGGGS--EEEEECCCEETTTTSEECHHHHHHHSCT-T
T ss_pred             HHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHH--------HHHHcCC--eEEEEEecCCcccCCCCCHHHHHHHhCC-C
Confidence            99999888     79999999999998865532        2334555  44444443   24578999999999987 8


Q ss_pred             CcEEEEcCCCCCC--CCCHH---HHHHHHH-HhCCEEEEechhhcccccccccCCCC---CcccEEEeccCccc--CCCC
Q 010008          243 PKLIIAGASAYPR--DFDYP---RMRQIAD-AVGALLMMDMAHISGLVAASVVADPF---KYCDVVTTTTHKSL--RGPR  311 (520)
Q Consensus       243 pklIi~~~s~~p~--~~d~~---~i~~ia~-~~g~~li~D~Ah~~gli~~~~~~~p~---~~aDiv~~S~hK~l--~Gpr  311 (520)
                      +|+|++..++||+  ..+.+   +|.++|+ ++|+++|+|++|. ++....  ....   ...++++.|+||++  +|+|
T Consensus       245 ~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~-~~~~~~--~~~~~~~~~~~i~~~S~SK~~g~~G~R  321 (533)
T 3f6t_A          245 IKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYG-AFVPNF--KSIYSVVPYNTMLVYSYSKLFGCTGWR  321 (533)
T ss_dssp             EEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTG-GGSTTC--CCHHHHSGGGEEEEEESHHHHTCGGGC
T ss_pred             CeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCcc-ccccCc--cCHhhcCCCCEEEEecCcccCCCcccc
Confidence            9999998888886  55555   7778888 5899999999965 444321  1111   13458999999987  6888


Q ss_pred             ceEEEeeCCCcchhhHHHhh--------------------------------cccCCCCCCCCChHHHHHHHHH-HHHHh
Q 010008          312 GGMIFFKKDPVLGVELESAI--------------------------------NNAVFPGLQGGPHNHTIGGLAV-CLKHA  358 (520)
Q Consensus       312 gG~I~~~~~~~~~~~l~~~i--------------------------------~~~~~p~~~g~p~~~~iaala~-al~~~  358 (520)
                      .|+++++++.. ...+.+.+                                .........+.+...+.+ ++. ++..+
T Consensus       322 iG~l~~~~~~~-~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a-~a~~a~~~L  399 (533)
T 3f6t_A          322 LGVIALNEKNV-FDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIM-EALFSMTHL  399 (533)
T ss_dssp             EEEEEEESSCH-HHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHH-HHHHHHHHH
T ss_pred             eEEEEECcHHH-HHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHH-HHHHHHHHH
Confidence            99999988410 00021111                                111111112333333333 221 22222


Q ss_pred             --------cCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCC-----C----------CCH-HHHHH
Q 010008          359 --------QSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM-----G----------IDG-ARVEK  414 (520)
Q Consensus       359 --------~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~-----g----------~~~-~~~~~  414 (520)
                              .....++..+.+.++++.+.+.|. .++.+..+ ....++|+++...     +          .+. +.+.+
T Consensus       400 ~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~~~~~~~~-~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~  477 (533)
T 3f6t_A          400 LTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-APKDETDT-NTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLK  477 (533)
T ss_dssp             TTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-CCCCCSTT-BCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHH
T ss_pred             hhhccccchHHHHHHHHHHHHHHHHHHHHhcC-CCccccCC-CceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHH
Confidence                    122346667778888889999986 66654433 2345667777420     1          233 44667


Q ss_pred             HHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          415 ILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       415 ~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      +|++.||.+.    ||.......+++||++..     .++++++++++.|.++++..
T Consensus       478 ll~~~GV~v~----pg~~f~~~~~~iRls~a~-----~~~e~i~~~i~~L~~~l~~~  525 (533)
T 3f6t_A          478 LAEKNGVVLV----DGVGFGAKPGELRVSQAN-----LPTEDYALIGKQVLELLKEY  525 (533)
T ss_dssp             HHHHTTSSSC----TTEEECSSTTEEEEESSS-----SCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCEEEe----CCcccCCCCCEEEEEEee-----CCHHHHHHHHHHHHHHHHHH
Confidence            7788999984    443211135789999743     45799999999999988754

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.87  E-value=1e-20  Score=195.95  Aligned_cols=312  Identities=11%  Similarity=0.049  Sum_probs=200.3

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCC--
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKP--  182 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~p--  182 (520)
                      .+|.|.+++...+.+ +..++.  . | ..+...+++    +++++++|.+.     .+..++|++|+.+++.++..+  
T Consensus        53 ~~p~v~~a~~~~~~~-~~~~~~--~-~-~~~~~~~l~----~~la~~~g~~~-----v~~~~~gt~a~~~al~~~~~~~~  118 (392)
T 3ruy_A           53 RHPKIINALIDQANR-VTLTSR--A-F-HSDQLGPWY----EKVAKLTNKEM-----VLPMNTGAEAVETAIKTARRWAY  118 (392)
T ss_dssp             TCHHHHHHHHHHHTT-CSCCCT--T-S-EETTHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHh-cccccc--c-c-CCHHHHHHH----HHHHHhcCCCE-----EEEeCcHHHHHHHHHHHHHHhhh
Confidence            579999999887753 222211  1 2 233444444    67888898432     244567789999988877544  


Q ss_pred             --------CCEEEEcCCCCCccccccccccccccc---cccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCC
Q 010008          183 --------HDRIMGLDLPHGGHLSHGFMTPKRRVS---GTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS  251 (520)
Q Consensus       183 --------GD~Vl~~~~~~~ghls~g~~~~~~~v~---~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s  251 (520)
                              ||+|++.++.|.|..............   +.........++      ..|+++|++++++ ++++|++..+
T Consensus       119 ~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~-~~~~v~~~~~  191 (392)
T 3ruy_A          119 DVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIP------YGDLEALKAAITP-NTAAFILEPI  191 (392)
T ss_dssp             HTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEEC------TTCHHHHHHHCCT-TEEEEEECSS
T ss_pred             hccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeC------cccHHHHHHHhcc-CeEEEEEeCc
Confidence                    789999999875542111000000000   000000122222      1289999999986 8999999888


Q ss_pred             CCCC--CCC----HHHHHHHHHHhCCEEEEechhhcccccccccC-CC-CC-cccEEEeccCcccCC--CCceEEEeeCC
Q 010008          252 AYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA-DP-FK-YCDVVTTTTHKSLRG--PRGGMIFFKKD  320 (520)
Q Consensus       252 ~~p~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~-~p-~~-~aDiv~~S~hK~l~G--prgG~I~~~~~  320 (520)
                      +||+  ..+    +++|+++|+++|++||+|++|. |+...+... .. .. ..|++++|  |+++|  .|+|++++++ 
T Consensus       192 ~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~d~~~~S--K~l~gG~~~~G~~~~~~-  267 (392)
T 3ruy_A          192 QGEAGINIPPAGFLKEALEVCKKENVLFVADEIQT-GLGRTGKVFACDWDNVTPDMYILG--KALGGGVFPISCAAANR-  267 (392)
T ss_dssp             BSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTTSCCEEEEECH-
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechh-CCCccccchhhhccCCCCCEEEEc--hhhhCChhhhEEEEECH-
Confidence            8875  566    9999999999999999999984 443322111 00 11 36787654  99977  7899999987 


Q ss_pred             CcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCC---EEecCCCCCee
Q 010008          321 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGY---KLVSGGSDNHL  397 (520)
Q Consensus       321 ~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~---~v~~~gt~~~~  397 (520)
                           ++.+.+......+..+ ++...+++...+++....   ++..+++.++++++.+.|.+.+.   ....+  ...+
T Consensus       268 -----~~~~~~~~~~~~~~~~-~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~g~~  336 (392)
T 3ruy_A          268 -----DILGVFEPGSHGSTFG-GNPLACAVSIAALEVLEE---EKLTERSLQLGEKLVGQLKEIDNPMITEVRG--KGLF  336 (392)
T ss_dssp             -----HHHTTCCTTSSCCSST-TCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTTCCCTTEEEEEE--ETTE
T ss_pred             -----HHHhhhccCCcCCCCC-CCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHhcCCCceEEEe--eeeE
Confidence                 6777665543333333 344455555556665432   45677888889999999987652   22222  2345


Q ss_pred             EEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          398 VLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       398 ~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      +++.+..   +..++.+.|.+.||.+.    |+     .++.+|++.+..    .+++|++++++.|++++
T Consensus       337 ~~~~~~~---~~~~l~~~l~~~gi~v~----~~-----~~~~iRi~~~~~----~~~~~i~~~~~~l~~~l  391 (392)
T 3ruy_A          337 IGIELNE---PARPYCEQLKAAGLLCK----ET-----HENVIRIAPPLV----ISEEDLEWAFQKIKAVL  391 (392)
T ss_dssp             EEEEESS---CSHHHHHHHHTTTEECC----CB-----TTTEEEECCCTT----CCHHHHHHHHHHHHHHH
T ss_pred             EEEEEcc---hHHHHHHHHHHCCcEEe----cC-----CCCEEEEECCCC----CCHHHHHHHHHHHHHHh
Confidence            5666643   56778888889999984    33     257899987654    35899999999998875

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.87  E-value=1.9e-20  Score=195.69  Aligned_cols=289  Identities=18%  Similarity=0.137  Sum_probs=190.6

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      |.+..++++    +++++++|.+.     .|..++|++|+..++.++++|||+|+++++.|++......    ..+...|
T Consensus        60 ~~~~~~~l~----~~ia~~~g~~~-----~i~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~----~~~~~~g  126 (404)
T 1e5e_A           60 GNPTVSNLE----GKIAFLEKTEA-----CVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFE----HALTKFG  126 (404)
T ss_dssp             CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHH----THHHHTT
T ss_pred             cChHHHHHH----HHHHHHhCCCc-----EEEeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHH----HHHHHcC
Confidence            455555555    67888899862     3556888999999999999999999999998865432110    0123345


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHH-hCCEEEEechhhccccccccc
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADA-VGALLMMDMAHISGLVAASVV  289 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~-~g~~li~D~Ah~~gli~~~~~  289 (520)
                      .  +++.++++      |++++++++++ ++|+|++++++||+  .+|+++|.++|++ +|+++++|++|..+...    
T Consensus       127 ~--~~~~v~~~------d~~~l~~~i~~-~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~----  193 (404)
T 1e5e_A          127 I--QVDFINTA------IPGEVKKHMKP-NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMIT----  193 (404)
T ss_dssp             C--EEEEECTT------STTHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTC----
T ss_pred             C--EEEEECCC------CHHHHHHhcCC-CCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhC----
Confidence            4  56665543      78999999987 89999999998886  7899999999999 99999999998755421    


Q ss_pred             CCCCC-cccEEEeccCcccCCC--C-ceEEEeeCCCcchhhHHH-hhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhH
Q 010008          290 ADPFK-YCDVVTTTTHKSLRGP--R-GGMIFFKKDPVLGVELES-AINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK  364 (520)
Q Consensus       290 ~~p~~-~aDiv~~S~hK~l~Gp--r-gG~I~~~~~~~~~~~l~~-~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~  364 (520)
                       .|+. ++|++++|+||++.||  | +|++++++      ++.+ ++.........++.+....++...+++     ...
T Consensus       194 -~~~~~~~di~~~S~sK~~~~~g~ri~G~~~~~~------~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~-----~~~  261 (404)
T 1e5e_A          194 -NPVDFGVDVVVHSATKYINGHTDVVAGLICGKA------DLLQQIRMVGIKDITGSVISPHDAWLITRGLS-----TLN  261 (404)
T ss_dssp             -CGGGGTCSEEEEETTTTTTCSSCCCCEEEEECH------HHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHT-----THH
T ss_pred             -CccccCCEEEEEcCccccCCCCCCeEEEEEECH------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHh-----HHH
Confidence             2333 6899999999998654  5 49999988      5555 665543221012223222222222333     234


Q ss_pred             HHHHHHHHHHHHHHHHHHHCC-CE-EecCC---------------CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCC
Q 010008          365 VYQNKVVSNCRALASRLVELG-YK-LVSGG---------------SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNS  427 (520)
Q Consensus       365 ~~~~~i~~na~~l~~~L~~~G-~~-v~~~g---------------t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~  427 (520)
                      .+.++..+|++.+.+.|++.. +. +..++               ....++.+++..   ..+.+.++|++.||.+....
T Consensus       262 ~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~l~~~~i~~~~~s  338 (404)
T 1e5e_A          262 IRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS---GFEGAKKLLDNLKLITLAVS  338 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT---HHHHHHHHHHTCSSSEESSC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC---CHHHHHHHHHhCCCceeccC
Confidence            456667788888888887753 21 11111               013455667742   13567788999998543211


Q ss_pred             CCCC----------C------------CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          428 VPGD----------K------------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       428 ~Pg~----------~------------~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                       .|.          .            ....++.|||+...        +|++++.+.|++++...
T Consensus       339 -~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~--------e~~~~li~~l~~al~~~  395 (404)
T 1e5e_A          339 -LGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI--------EDADELIADFKQGLDAL  395 (404)
T ss_dssp             -CCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS--------SCHHHHHHHHHHHHHHH
T ss_pred             -CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC--------CCHHHHHHHHHHHHHHH
Confidence             121          0            00115789998652        68888888888887643

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.87  E-value=4.6e-21  Score=193.94  Aligned_cols=282  Identities=14%  Similarity=0.103  Sum_probs=186.6

Q ss_pred             HHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC
Q 010008          145 QKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE  224 (520)
Q Consensus       145 ~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~  224 (520)
                      ++++++++|++ +    .|.++||++|+..++.++++|||+|+++++.|.++......    .....|.  +++.++.  
T Consensus         4 ~~~la~~~g~~-~----~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~----~~~~~g~--~~~~~~~--   70 (331)
T 1pff_A            4 EGKIAKLEHAE-A----CAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEH----QLRKFGV--EVDFIDM--   70 (331)
T ss_dssp             HHHHHHHHTCS-E----EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHT----HHHHTTC--EEEEECT--
T ss_pred             HHHHHHHhCCC-e----EEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHH----HHHhcCC--EEEEeCC--
Confidence            36788899987 3    46679999999999999999999999999988664321100    0112344  5555443  


Q ss_pred             CCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHH-hCCEEEEechhhcccccccccCCCCC-cccEEE
Q 010008          225 STGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADA-VGALLMMDMAHISGLVAASVVADPFK-YCDVVT  300 (520)
Q Consensus       225 ~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~-~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~  300 (520)
                          +|++++++.+++ ++++|++++++||+  ..|+++|.++|++ +|+++++|++|..|....     ++. ++|+++
T Consensus        71 ----~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~-----~~~~~~d~~~  140 (331)
T 1pff_A           71 ----AVPGNIEKHLKP-NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTN-----PLDLGVDIVV  140 (331)
T ss_dssp             ----TSTTHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCC-----GGGGTCSEEE
T ss_pred             ----CCHHHHHHhhcC-CCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCC-----hhhcCCcEEE
Confidence                578899999987 89999999888876  7899999999999 999999999998765422     222 589999


Q ss_pred             eccCcccCCC--C-ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 010008          301 TTTHKSLRGP--R-GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL  377 (520)
Q Consensus       301 ~S~hK~l~Gp--r-gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l  377 (520)
                      +|+||++.||  | +|+++++++     ++.+++......+..++++....++...+++.     .....++..++.+.+
T Consensus       141 ~s~~K~~~~~~~r~~G~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~  210 (331)
T 1pff_A          141 HSATKYINGHTDVVAGLVCSRAD-----IIAKVKSQGIKDITGAIISPHDAWLITRGTLT-----LDMRVKRAAENAQKV  210 (331)
T ss_dssp             EETTTTTSSSSSCCCEEEEECHH-----HHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred             EECccccCCCCCceEEEEEeCcH-----HHHHHHHHHHHhhcCCCCCHHHHHHHHcCcch-----HHHHHHHHHHHHHHH
Confidence            9999998765  4 689999863     46666655443312223333332222223432     233445566777777


Q ss_pred             HHHHHHC-C--------------CEEecC--CCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCC----------
Q 010008          378 ASRLVEL-G--------------YKLVSG--GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG----------  430 (520)
Q Consensus       378 ~~~L~~~-G--------------~~v~~~--gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg----------  430 (520)
                      .+.|++. .              +++..+  ....+++.+.+.    +.+.+.+.|++.||.+...+..+          
T Consensus       211 ~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~  286 (331)
T 1pff_A          211 AEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD----GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPAS  286 (331)
T ss_dssp             HHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS----SHHHHHHHHHTCSSSEECSSCCSSSCEEECHHH
T ss_pred             HHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC----CHHHHHHHHHhCCCceeccCCCCcceeeecchh
Confidence            7777653 1              111110  012344555543    56788899999999775431111          


Q ss_pred             --C---------CCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          431 --D---------KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       431 --~---------~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                        .         .....++.+||+.+..+    ++++++++.+.|+++
T Consensus       287 ~~~~~~~~~~~~~~g~~~~~iRis~~~~~----t~~~i~~l~~~l~~~  330 (331)
T 1pff_A          287 MTHAGVPKEEREAAGLTDNLIRLSVGCEN----VQDIIDDLKQALDLV  330 (331)
T ss_dssp             HTSTTSCHHHHHHTTCCTTEEEEECCSSC----HHHHHHHHHHHHHTC
T ss_pred             hcccccCHHHHHhcCCCCCeEEEEEecCC----HHHHHHHHHHHHHHh
Confidence              0         00112578999987654    489999999888653

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.87  E-value=8.4e-21  Score=200.19  Aligned_cols=291  Identities=13%  Similarity=0.060  Sum_probs=188.2

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhh-CCCCCEEEEcCCCCCccccccccccccccccccceE
Q 010008          138 DELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYF  215 (520)
Q Consensus       138 d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~al-l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~  215 (520)
                      .++....++++++++|++++    +|.+++|+ .++.+++.++ +++||+|+++++.|.+......    ......|.  
T Consensus       107 ~~~~~~~~~~la~~~g~~~~----~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~----~~a~~~G~--  176 (438)
T 1wyu_A          107 LQATFEYQTMIAELAGLEIA----NASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLR----AYLEAVGA--  176 (438)
T ss_dssp             HHHHHHHHHHHHHHHTSSEE----CSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHH----HHHHHTTC--
T ss_pred             HHHHHHHHHHHHHHhCCCcc----ceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHH----HHHHHCCC--
Confidence            34445677899999999864    44456665 4445555553 6899999999987754321100    00122454  


Q ss_pred             EEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEech-hhcccccccccCCC
Q 010008          216 ESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMA-HISGLVAASVVADP  292 (520)
Q Consensus       216 ~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~A-h~~gli~~~~~~~p  292 (520)
                      +++.+++  +++.+|+++    +++ +|++|+++++ |++  ..|+++|.++|+++|+++++|.. +..|..     ..+
T Consensus       177 ~v~~v~~--~~~~~d~~~----i~~-~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~-----~~~  243 (438)
T 1wyu_A          177 KLLTLPL--EGGRTPLPE----VGE-EVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVL-----KPP  243 (438)
T ss_dssp             EEEEECC--BTTBCCCCC----CCT-TEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTB-----CCH
T ss_pred             EEEEEcC--cCCccCHHH----hCC-CeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCc-----CCC
Confidence            6666555  356788776    555 7999999888 554  77999999999999999997754 444432     112


Q ss_pred             CC-cccEEEeccCc-----ccCCCCceEEEeeCCCcchhhHHHhhcccC--------------C---------CCCCCCC
Q 010008          293 FK-YCDVVTTTTHK-----SLRGPRGGMIFFKKDPVLGVELESAINNAV--------------F---------PGLQGGP  343 (520)
Q Consensus       293 ~~-~aDiv~~S~hK-----~l~GprgG~I~~~~~~~~~~~l~~~i~~~~--------------~---------p~~~g~p  343 (520)
                      -. ++|++++|.||     |+.||++|++++++      ++.+.+....              +         ....+++
T Consensus       244 ~~~g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~------~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~  317 (438)
T 1wyu_A          244 GAYGADIAVGDGQSLGLPMGFGGPHFGFLATKK------AFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKS  317 (438)
T ss_dssp             HHHTCSEEEEECTTTTCCCGGGCSCCEEEEECG------GGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSC
T ss_pred             ccCCCCEEEECCcccCCCccCCCCCeeEEEEcH------HHHHhCCCceeccccccCCCcceeeeccccccccchhcccC
Confidence            11 58999999777     68899889999987      4444331100              0         0001233


Q ss_pred             hH---HHHHHHHHH--HHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHh
Q 010008          344 HN---HTIGGLAVC--LKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILD  417 (520)
Q Consensus       344 ~~---~~iaala~a--l~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~  417 (520)
                      +.   ..+++++++  +......++++..+++.++++++.+.|.+. |+++..+.  ..+.++.++. +.+..++.+.|.
T Consensus       318 ~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~~~~~~~~~~-~~~~~~~~~~L~  394 (438)
T 1wyu_A          318 NITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK--PFFNEFALAL-PKDPEAVRRALA  394 (438)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS--SBCSEEEEEC-SSCHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCC--CeEEEEEEeC-CCCHHHHHHHHH
Confidence            22   344454444  544433456788889999999999999986 99987642  2222222321 246778888888


Q ss_pred             hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          418 MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       418 ~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      +.||.+..  .|+.  .+.++++||++...+    +++|++++++.|++++
T Consensus       395 ~~gi~v~~--~~~~--~~~~~~lRis~~~~~----t~edi~~~~~~l~~~l  437 (438)
T 1wyu_A          395 ERGFHGAT--PVPR--EYGENLALFAATELH----EEEDLLALREALKEVL  437 (438)
T ss_dssp             HTTCCCCE--ECCT--TSCSSEEEEECCTTC----CHHHHHHHHHHHHHHC
T ss_pred             HCCceecc--cccc--ccCCCeEEEEecccC----CHHHHHHHHHHHHHHh
Confidence            88998721  0111  112678999987554    4899999999987653

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.87  E-value=4.4e-21  Score=203.47  Aligned_cols=327  Identities=17%  Similarity=0.204  Sum_probs=200.6

Q ss_pred             HHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC----C
Q 010008          107 RAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK----P  182 (520)
Q Consensus       107 ~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~----p  182 (520)
                      +.|.+++...+....       ..|+..+...+++    +++++++|.+.     .+.+++|++|+.+++.++++    |
T Consensus        55 ~~v~~a~~~~~~~~~-------~~y~~~~~~~~l~----~~la~~~~~~~-----v~~t~ggt~A~~~al~~~~~~~~~~  118 (467)
T 1ax4_A           55 NAMSDHQWAAMITGD-------EAYAGSRNYYDLK----DKAKELFNYDY-----IIPAHQGRGAENILFPVLLKYKQKE  118 (467)
T ss_dssp             CCEEHHHHHHHHTCC-------CCSSSCHHHHHHH----HHHHHHHCCCE-----EEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhcc-------cccccCccHHHHH----HHHHHHcCCCc-----EEEcCCcHHHHHHHHHHHHHhhccC
Confidence            667776665554221       1133334455555    67888888742     24445677999999999988    9


Q ss_pred             CCE---EEEcCCCCCccccccccccccccccccceEEEEEcccC----C-----CCCCCCHHHHHHHhhhc---CCcEEE
Q 010008          183 HDR---IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD----E-----STGLVDYDMLEKTAILF---RPKLII  247 (520)
Q Consensus       183 GD~---Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d----~-----~~~~iD~d~le~~i~~~---~pklIi  247 (520)
                      ||+   |++..+.++...        ..+...|.  +++..+.+    .     .++.+|+++|++++++.   ++++|+
T Consensus       119 Gd~~~~viv~~~~~~~~~--------~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi  188 (467)
T 1ax4_A          119 GKAKNPVFISNFHFDTTA--------AHVELNGC--KAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIV  188 (467)
T ss_dssp             TCCSSCEEEESSCCHHHH--------HHHHHTTC--EEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEE
T ss_pred             CCccceEEEeccccchhh--------HHHhccCC--ceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEE
Confidence            998   888732211110        12233444  34433221    1     14578999999999853   589999


Q ss_pred             EcCCCCCC---CC---CHHHHHHHHHHhCCEEEEechhhc-ccc--------cccccCCCC-----CcccEEEeccCccc
Q 010008          248 AGASAYPR---DF---DYPRMRQIADAVGALLMMDMAHIS-GLV--------AASVVADPF-----KYCDVVTTTTHKSL  307 (520)
Q Consensus       248 ~~~s~~p~---~~---d~~~i~~ia~~~g~~li~D~Ah~~-gli--------~~~~~~~p~-----~~aDiv~~S~hK~l  307 (520)
                      ++.++||+   ..   ++++|+++|++||++||+|++|.. |..        ..+.....+     .++|++++|+||++
T Consensus       189 ~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~  268 (467)
T 1ax4_A          189 STVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDP  268 (467)
T ss_dssp             EESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTT
T ss_pred             EeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccccC
Confidence            98777664   33   467999999999999999998765 221        111110001     24789999999998


Q ss_pred             CCCCceEEEeeCCCcchhhHHHhhcccC--CCC--CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Q 010008          308 RGPRGGMIFFKKDPVLGVELESAINNAV--FPG--LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE  383 (520)
Q Consensus       308 ~GprgG~I~~~~~~~~~~~l~~~i~~~~--~p~--~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~  383 (520)
                      ..|-||+++++++.    ++.+++....  +.+  ..++.....+++++.+++....   .+..++..++++.+.+.|.+
T Consensus       269 g~~~Gg~~~~~d~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~  341 (467)
T 1ax4_A          269 LLNIGGLVAIRDNE----EIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE---EEYLHYRIGQVKYLGDRLRE  341 (467)
T ss_dssp             CCSSCEEEEESSCH----HHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcceEEEeCCHH----HHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHh
Confidence            65557888887310    1333222110  011  1234444455555556765433   23344555778889999988


Q ss_pred             CCCEEecCCCCCeeEEEE-------ecCCCCCHHHHHHHH-hhcCeEEcC-CCC-CCCC------CCCCCCEEEEccCCc
Q 010008          384 LGYKLVSGGSDNHLVLVD-------LRPMGIDGARVEKIL-DMASITLNK-NSV-PGDK------SALVPGGIRIGSPAM  447 (520)
Q Consensus       384 ~G~~v~~~gt~~~~~~vd-------~~~~g~~~~~~~~~L-~~~gI~v~~-~~~-Pg~~------~~~~~~giRig~~~~  447 (520)
                      .|++++.+ ...+++|++       +...+++..++.+.| ++.||.+.. +.. .+..      .+...+.|||+++..
T Consensus       342 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~  420 (467)
T 1ax4_A          342 AGIPIQYP-TGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARR  420 (467)
T ss_dssp             TTCCBCSS-CCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTT
T ss_pred             CCCCcccC-CCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccc
Confidence            88877643 235667777       322234456677777 899999864 211 0110      011237899998743


Q ss_pred             cccCCCHHHHHHHHHHHHHHHHH
Q 010008          448 TTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       448 tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +   ++++|++++++.|.++++.
T Consensus       421 ~---~t~e~i~~~~~~l~~~~~~  440 (467)
T 1ax4_A          421 V---YTNDHMDYIADALIGLKEK  440 (467)
T ss_dssp             S---SCHHHHHHHHHHHHTTHHH
T ss_pred             c---CCHHHHHHHHHHHHHHHHh
Confidence            2   4689999999999998865

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.87  E-value=2.7e-21  Score=201.23  Aligned_cols=289  Identities=16%  Similarity=0.142  Sum_probs=186.9

Q ss_pred             chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccc
Q 010008          134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  213 (520)
Q Consensus       134 ~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~  213 (520)
                      .+..++++    +++++++|.+ +    .+.++||++|+..++.++++|||+|+++++.|++......    ......|.
T Consensus        63 ~~~~~~l~----~~la~~~g~~-~----~i~~~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~----~~~~~~g~  129 (398)
T 2rfv_A           63 NPTTDALE----KKLAVLERGE-A----GLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLS----HSMPKFGI  129 (398)
T ss_dssp             CHHHHHHH----HHHHHHHTCS-E----EEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHH----THHHHTTC
T ss_pred             ChHHHHHH----HHHHHHhCCC-c----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHH----HHHHHcCC
Confidence            34444444    7888999987 2    4667899999999999999999999999998865432110    00123454


Q ss_pred             eEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCC
Q 010008          214 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD  291 (520)
Q Consensus       214 ~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~  291 (520)
                        +++.++++      |++++++.+++ ++++|+++.++||+  ..|+++|+++|+++|+++++|++|..+...     .
T Consensus       130 --~~~~v~~~------d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~-----~  195 (398)
T 2rfv_A          130 --NVRFVDAA------KPEEIRAAMRP-ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQ-----Q  195 (398)
T ss_dssp             --EEEEECTT------SHHHHHHHCCT-TEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-----C
T ss_pred             --EEEEeCCC------CHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC-----C
Confidence              55565442      89999999987 89999999888886  789999999999999999999998766432     2


Q ss_pred             CCC-cccEEEeccCcccCCC--C-ceEEEeeCCCcchhhHHH-hhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHH
Q 010008          292 PFK-YCDVVTTTTHKSLRGP--R-GGMIFFKKDPVLGVELES-AINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  366 (520)
Q Consensus       292 p~~-~aDiv~~S~hK~l~Gp--r-gG~I~~~~~~~~~~~l~~-~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~  366 (520)
                      ++. ++|+++.|+||++.||  | +|++++++      ++.+ .+.........++.+....++...+++.     ....
T Consensus       196 ~~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~  264 (398)
T 2rfv_A          196 PLQLGADIVVHSVTKYINGHGDVIGGIIVGKQ------EFIDQARFVGLKDITGGCMSPFNAWLTLRGVKT-----LGIR  264 (398)
T ss_dssp             GGGGTCSEEEEETTTTTTCSSCCCCEEEEECH------HHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTT-----HHHH
T ss_pred             chhhCCcEEEEeCcccccCCCCceEEEEEECH------HHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhh-----HHHH
Confidence            233 5899999999998665  4 39999987      4544 4433221110123333333333334432     3445


Q ss_pred             HHHHHHHHHHHHHHHHHCC-CE--------------EecC--CCCCeeEEEEecCCCCCHHHHHHHHhhc---CeEEcCC
Q 010008          367 QNKVVSNCRALASRLVELG-YK--------------LVSG--GSDNHLVLVDLRPMGIDGARVEKILDMA---SITLNKN  426 (520)
Q Consensus       367 ~~~i~~na~~l~~~L~~~G-~~--------------v~~~--gt~~~~~~vd~~~~g~~~~~~~~~L~~~---gI~v~~~  426 (520)
                      .++..+|++.+.+.|.+.+ +.              +..+  .....++++++..   ......+++++.   ||.++.+
T Consensus       265 ~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~l~~~~~~~~i~~~~G  341 (398)
T 2rfv_A          265 MERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG---GLEAGRRMINSVELCLLAVSLG  341 (398)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT---HHHHHHHHHTTCSSSEECSCCS
T ss_pred             HHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC---CHHHHHHHHHhCCcceeccCCC
Confidence            6677788888999887743 11              1110  0134566777742   123455566554   6666443


Q ss_pred             CC------CC---CC--C-------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          427 SV------PG---DK--S-------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       427 ~~------Pg---~~--~-------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      ..      |.   +.  +       ...++.|||+....+    ++++++++.++|+++
T Consensus       342 ~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~----~~~~i~~l~~al~~~  396 (398)
T 2rfv_A          342 DTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLED----PEDIINDLEHAIRKA  396 (398)
T ss_dssp             SSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSC----HHHHHHHHHHHHHHH
T ss_pred             CcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCC----HHHHHHHHHHHHHhh
Confidence            21      00   00  0       012578999987544    478888888887653

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.87  E-value=7.1e-21  Score=201.10  Aligned_cols=287  Identities=17%  Similarity=0.109  Sum_probs=189.6

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +++..+++|    +++++++|.+.     .|.++||++|+.+++.++++|||+|+++++.|++.+....    ..+...|
T Consensus       112 ~~~~~~~l~----~~lA~l~g~~~-----~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~----~~~~~~G  178 (445)
T 1qgn_A          112 GNPTTVVLE----EKISALEGAES-----TLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIE----TILPKMG  178 (445)
T ss_dssp             CCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHH----HTGGGGT
T ss_pred             CChHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHH----HHHHHcC
Confidence            345555555    67889999862     4667999999999999999999999999988876432100    0122345


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCC-cEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhccccccccc
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRP-KLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV  289 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~p-klIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~  289 (520)
                      .  +++.++.+      |++++++++++ ++ |+|++.+++||+  ..|+++|+++|+++|++|++|++|..+..     
T Consensus       179 ~--~v~~v~~~------d~~~l~~ai~~-~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~-----  244 (445)
T 1qgn_A          179 I--TATVIDPA------DVGALELALNQ-KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLN-----  244 (445)
T ss_dssp             C--EEEEECSS------CHHHHHHHHHH-SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT-----
T ss_pred             C--EEEEeCCC------CHHHHHHHhcc-CCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCccccc-----
Confidence            4  55565432      89999999988 78 999999998886  78999999999999999999999876642     


Q ss_pred             CCCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHH
Q 010008          290 ADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV  365 (520)
Q Consensus       290 ~~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~  365 (520)
                      ..++. ++|++++|+||++.|+.   +|++++++      ++.+++...... ..+.++....+.   +++.+  ..+..
T Consensus       245 ~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~------~l~~~l~~~~~~-~g~~~~~~~a~~---~~~~l--~~l~~  312 (445)
T 1qgn_A          245 QKALALGADLVLHSATKFLGGHNDVLAGCISGPL------KLVSEIRNLHHI-LGGALNPNAAYL---IIRGM--KTLHL  312 (445)
T ss_dssp             CCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECH------HHHHHHHHHHHH-HCCCCCHHHHHH---HHHHG--GGHHH
T ss_pred             CCccccCCEEEEECCcccccccccceEEEEEECH------HHHHHHHHHHHH-hCCCCCHHHHHH---HHHhH--HHHHH
Confidence            23444 68999999999998775   89999987      565555432111 112122211111   12222  22345


Q ss_pred             HHHHHHHHHHHHHHHHHHC-CC-EEecCCC---------------CCeeEEEEecCCCCCHHHHHHHHhh---cCeEEcC
Q 010008          366 YQNKVVSNCRALASRLVEL-GY-KLVSGGS---------------DNHLVLVDLRPMGIDGARVEKILDM---ASITLNK  425 (520)
Q Consensus       366 ~~~~i~~na~~l~~~L~~~-G~-~v~~~gt---------------~~~~~~vd~~~~g~~~~~~~~~L~~---~gI~v~~  425 (520)
                      ..++..++++.+.+.|.+. ++ .+..++-               ...++.+.+..   ..+.+.++++.   .+|.++.
T Consensus       313 r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~---~~~~~~~~l~~l~~~~i~~s~  389 (445)
T 1qgn_A          313 RVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDG---DLLTTAKFVDALKIPYIAPSF  389 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESS---CHHHHHHHHHHCSSSEECSCC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECC---CHHHHHHHHHhCCCceEeccC
Confidence            5677788899999999874 55 4443321               23455666642   22334444444   3666554


Q ss_pred             CCC------CCC------------CCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          426 NSV------PGD------------KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       426 ~~~------Pg~------------~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +..      |..            .....++.||+|+.        .+|++.+.+.|++++.
T Consensus       390 G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG--------~Edid~li~~L~~al~  443 (445)
T 1qgn_A          390 GGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG--------VEDFDDLKADILQALD  443 (445)
T ss_dssp             CSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC--------SSCHHHHHHHHHHHHH
T ss_pred             CCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec--------cCCHHHHHHHHHHHHh
Confidence            321      100            00122478999864        4689999988888775

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.87  E-value=1.1e-21  Score=204.80  Aligned_cols=327  Identities=15%  Similarity=0.194  Sum_probs=201.2

Q ss_pred             ccceEecCC----C---CChHHHHHHHhh-hhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC--CCCCCCceee
Q 010008           94 KSLELIASE----N---FTSRAVMEAVGS-CLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNV  163 (520)
Q Consensus        94 ~~i~Liase----n---~~~~~V~ea~~s-~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg--~~~~~~~~~V  163 (520)
                      +.|+|..+.    +   ++++.|.+++.. .+......+|..      .....++++...+++...+|  ++++++ +.+
T Consensus        30 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~------~~g~~~lr~~ia~~~~~~~~~~~~~~~i-~~~  102 (412)
T 1yaa_A           30 TKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLG------ITGLPSLTSNAAKIIFGTQSDALQEDRV-ISV  102 (412)
T ss_dssp             SCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCC------TTCCHHHHHHHHHHHHCTTCHHHHTTCE-EEE
T ss_pred             CeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCC------CCCcHHHHHHHHHHHhcCCCCCCCcceE-EEE
Confidence            467777654    2   567999999988 765322223422      11123455444444433334  234422 111


Q ss_pred             ecCChHHHHHHH--HHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEccc-CCCCCCCCHHHHHHHhhh
Q 010008          164 QPLSGSPANFEV--YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEKTAIL  240 (520)
Q Consensus       164 ~~~sGs~A~~~~--l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~-d~~~~~iD~d~le~~i~~  240 (520)
                      ++.+|++|+.++  +..+++|||+|++++|.|.++..        .+...|.  +++.+++ +++++.+|++++++.+++
T Consensus       103 ~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~--------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~  172 (412)
T 1yaa_A          103 QSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMA--------IFENQGL--KTATYPYWANETKSLDLNGFLNAIQK  172 (412)
T ss_dssp             EEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHH--------HHHTTTC--CEEEEECEETTTTEECHHHHHHHHHH
T ss_pred             eccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHH--------HHHHcCc--eEEEEeeecCCCCccCHHHHHHHHHh
Confidence            234455888877  34556799999999998866431        2233454  5555555 444678999999999976


Q ss_pred             cC-Cc-EEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccc--cCCCC---C--c----ccEEEec
Q 010008          241 FR-PK-LIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV--VADPF---K--Y----CDVVTTT  302 (520)
Q Consensus       241 ~~-pk-lIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~--~~~p~---~--~----aDiv~~S  302 (520)
                      .+ ++ +++++.++||+  ..   ++++|.++|+++|+++|+|++|. ++...+.  ...++   .  +    .++++.|
T Consensus       173 ~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s  251 (412)
T 1yaa_A          173 APEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQ-GFATGDLDKDAYAVRLGVEKLSTVSPVFVCQS  251 (412)
T ss_dssp             SCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEE
T ss_pred             CCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccc-cccCCcccchhHHHHHHHhcCCCCcceEEEec
Confidence            32 24 44448888886  44   46688999999999999999963 3333220  00011   1  2    2477899


Q ss_pred             cCcccC--CCCceEEE--e-----eCCCcchhh----HHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc-----CchhH
Q 010008          303 THKSLR--GPRGGMIF--F-----KKDPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-----SPEFK  364 (520)
Q Consensus       303 ~hK~l~--GprgG~I~--~-----~~~~~~~~~----l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~-----~~~~~  364 (520)
                      +||+++  |.|.|+++  +     ++      +    +.+.+........ ++++....++...+|+...     ..+.+
T Consensus       252 ~sK~~~~~GlriG~~~~~~~~~~~~~------~~~~~l~~~l~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  324 (412)
T 1yaa_A          252 FAKNAGMYGERVGCFHLALTKQAQNK------TIKPAVTSQLAKIIRSEV-SNPPAYGAKIVAKLLETPELTEQWHKDMV  324 (412)
T ss_dssp             CTTTSCCGGGCEEEEEEECCSCTTHH------HHHHHHHHHHHHHHHTTT-SSCCHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             cCCCCCCcCCcceEEEEEecCCCCCH------HHHHHHHHHHHHHHhhcc-CCCChHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            999873  67779998  6     33      4    5555544222222 2333334444444554321     12346


Q ss_pred             HHHHHHHHHHHHHHHHHHHCC----CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEE
Q 010008          365 VYQNKVVSNCRALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGI  440 (520)
Q Consensus       365 ~~~~~i~~na~~l~~~L~~~G----~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~gi  440 (520)
                      +..+++.++++.+.+.|.+.|    +++..+. .+.+.|++     ++...+.+.|+++||.+.    |         ++
T Consensus       325 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~l~~~gi~v~----~---------~~  385 (412)
T 1yaa_A          325 TMSSRITKMRHALRDHLVKLGTPGNWDHIVNQ-CGMFSFTG-----LTPQMVKRLEETHAVYLV----A---------SG  385 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHC-CSSEEECC-----CCHHHHHHHHHHHCEECC----T---------TS
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCCeeeeccC-ceEEEeeC-----CCHHHHHHHHHhCCEEec----c---------Cc
Confidence            677888889999999998855    6665432 23344433     345677778888999983    1         47


Q ss_pred             EEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          441 RIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       441 Rig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ||++..     .+++|++++.+.|+++++
T Consensus       386 Ris~~~-----~~~~~i~~~~~~l~~~~~  409 (412)
T 1yaa_A          386 RASIAG-----LNQGNVEYVAKAIDEVVR  409 (412)
T ss_dssp             EEEGGG-----CCTTTHHHHHHHHHHHHH
T ss_pred             EEEEcc-----CCHhHHHHHHHHHHHHHH
Confidence            998753     347999999999988765

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.87  E-value=5.4e-21  Score=199.76  Aligned_cols=288  Identities=18%  Similarity=0.124  Sum_probs=187.2

Q ss_pred             chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccc
Q 010008          134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  213 (520)
Q Consensus       134 ~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~  213 (520)
                      ++..+++|    +++++++|.+.     .|.++||++|+.+++. +++|||+|+++++.|++++....    ......|.
T Consensus        66 ~p~~~~l~----~~la~~~g~~~-----~i~~~sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~----~~~~~~G~  131 (403)
T 3cog_A           66 NPTRNCLE----KAVAALDGAKY-----CLAFASGLAATVTITH-LLKAGDQIICMDDVYGGTNRYFR----QVASEFGL  131 (403)
T ss_dssp             CHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHH----HTGGGGTC
T ss_pred             CchHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHH----HHHHHcCC
Confidence            34456666    67888999862     5667999999999998 99999999999998876432110    01123454


Q ss_pred             eEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhC-CEEEEechhhcccccccccC
Q 010008          214 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVG-ALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       214 ~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g-~~li~D~Ah~~gli~~~~~~  290 (520)
                        +++.++++      |++++++++++ ++++|+++.++||+  ..|+++|+++|+++| +++++|++|..+..     .
T Consensus       132 --~v~~v~~~------d~~~l~~~i~~-~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~-----~  197 (403)
T 3cog_A          132 --KISFVDCS------KIKLLEAAITP-ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYF-----Q  197 (403)
T ss_dssp             --EEEEECTT------SHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTT-----C
T ss_pred             --EEEEECCC------CHHHHHHhcCc-CCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCccccc-----C
Confidence              56665543      89999999987 89999999998886  789999999999999 99999999876532     1


Q ss_pred             CCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  366 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~  366 (520)
                      .|+. ++|+++.|+||++.||.   +|+++++++     ++.+++.....+. .++++....++...+++     .....
T Consensus       198 ~~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~-----~l~~~l~~~~~~~-g~~~~~~~~~~~~~~l~-----~l~~r  266 (403)
T 3cog_A          198 RPLALGADISMYSATKYMNGHSDVVMGLVSVNCE-----SLHNRLRFLQNSL-GAVPSPIDCYLCNRGLK-----TLHVR  266 (403)
T ss_dssp             CTTTTTCSEEEEETTTTTTCSSCCCCEEEEECCH-----HHHHHHHHHHHHH-CCCCCHHHHHHHHHHHT-----THHHH
T ss_pred             CccccCCeEEEEcChhhccCCCCCeEEEEEECcH-----HHHHHHHHHHHhc-CCCCCHHHHHHHHhhhh-----HHHHH
Confidence            3343 68999999999998775   599999653     5666554432211 11222222222122232     23445


Q ss_pred             HHHHHHHHHHHHHHHHHCC---------------CEEecCC--CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcC---C
Q 010008          367 QNKVVSNCRALASRLVELG---------------YKLVSGG--SDNHLVLVDLRPMGIDGARVEKILDMASITLNK---N  426 (520)
Q Consensus       367 ~~~i~~na~~l~~~L~~~G---------------~~v~~~g--t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~---~  426 (520)
                      .++..+|+..+.+.|++..               +.+..+.  ....++.+.+..   ..+.+.++|++.||.+..   +
T Consensus       267 ~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~---~~~~~~~~l~~~~i~~~~~s~G  343 (403)
T 3cog_A          267 MEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKG---TLQHAEIFLKNLKLFTLAESLG  343 (403)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESS---CHHHHHHHHHHCSSSEECSCCS
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecC---CHHHHHHHHHhCCcceEccCCC
Confidence            6777788888888887641               1111100  013455566642   236678888888986532   1


Q ss_pred             C------CCCCCC------------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          427 S------VPGDKS------------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       427 ~------~Pg~~~------------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      .      .|+...            ...++.|||++...+    ++++++.+.++|+++
T Consensus       344 ~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~----~~d~i~~l~~al~~~  398 (403)
T 3cog_A          344 GFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLED----EEDLLEDLDQALKAA  398 (403)
T ss_dssp             SSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSC----HHHHHHHHHHHHHHH
T ss_pred             CcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCC----HHHHHHHHHHHHHHh
Confidence            1      232110            112578999987533    366666666666543

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.87  E-value=1e-19  Score=190.42  Aligned_cols=292  Identities=16%  Similarity=0.172  Sum_probs=186.4

Q ss_pred             chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccc
Q 010008          134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  213 (520)
Q Consensus       134 ~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~  213 (520)
                      ++..++++    +++++++|.+.     .+...+|++|+..++.+++++||+|+++++.|++.+....    ..+...|.
T Consensus        55 ~~~~~~l~----~~la~~~g~~~-----~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~----~~~~~~g~  121 (412)
T 2cb1_A           55 DPTAKALE----ERLKALEGALE-----AVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFG----QVLSLMGV  121 (412)
T ss_dssp             CHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHH----HTTTTTTC
T ss_pred             ChHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHH----HHHHHcCC
Confidence            34455555    67889999862     3456788899999999999999999999998865432110    01223344


Q ss_pred             eEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCC
Q 010008          214 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD  291 (520)
Q Consensus       214 ~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~  291 (520)
                        +++.+++       |++++++++++ ++++|+++.++||+  ..|+++|+++|+++|+++++|++|..+..    ...
T Consensus       122 --~~~~~~~-------~~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~----~~~  187 (412)
T 2cb1_A          122 --TVRYVDP-------EPEAVREALSA-KTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGA----LCR  187 (412)
T ss_dssp             --EEEEECS-------SHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTT----SCC
T ss_pred             --EEEEECC-------CHHHHHHHhcc-CCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccc----cCC
Confidence              5556543       38999999987 89999999888875  78999999999999999999999876511    112


Q ss_pred             CCC-cccEEEeccCcccCCCCc--eEEEeeCCCcc----------------------hhhHHHhhcccCCCCCCCCChHH
Q 010008          292 PFK-YCDVVTTTTHKSLRGPRG--GMIFFKKDPVL----------------------GVELESAINNAVFPGLQGGPHNH  346 (520)
Q Consensus       292 p~~-~aDiv~~S~hK~l~Gprg--G~I~~~~~~~~----------------------~~~l~~~i~~~~~p~~~g~p~~~  346 (520)
                      ++. ++|++++|+||++.||.+  |++++.++...                      ..++.+.++...... .|.....
T Consensus       188 ~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~-~g~~~~~  266 (412)
T 2cb1_A          188 PLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSL-CGMALSP  266 (412)
T ss_dssp             GGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTT-TCCCCCH
T ss_pred             ccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHh-cCCCCCh
Confidence            233 689999999999977643  65555442100                      002223332221111 1211111


Q ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEe-cCCC---------------CCeeEEEEecCCCCCH
Q 010008          347 TIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLV-SGGS---------------DNHLVLVDLRPMGIDG  409 (520)
Q Consensus       347 ~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~-~~gt---------------~~~~~~vd~~~~g~~~  409 (520)
                      ..++  .++..+  ..+....++..++++.+.+.|.+ .++.++ .++.               ...++.+.+   + +.
T Consensus       267 ~~a~--~~~~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~---~-~~  338 (412)
T 2cb1_A          267 FNAY--LLFQGL--ETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL---G-DL  338 (412)
T ss_dssp             HHHH--HHHHHG--GGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC---S-SH
T ss_pred             HHhH--HHHcCC--chHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe---C-CH
Confidence            1111  122222  23455667777899999999987 477754 2321               123444554   3 67


Q ss_pred             HHHHHHHhhcCeEEcCCC---------CCCCCC------------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          410 ARVEKILDMASITLNKNS---------VPGDKS------------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       410 ~~~~~~L~~~gI~v~~~~---------~Pg~~~------------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      +.+.+.|++.||.+ ..+         .|....            ...++.||+++...++    +++++.+.+.|++
T Consensus       339 ~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~----~~~i~~l~~al~~  411 (412)
T 2cb1_A          339 ERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDP----LDLLALFEEALEA  411 (412)
T ss_dssp             HHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCH----HHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCH----HHHHHHHHHHHhh
Confidence            88899999999998 553         121100            0115789999876654    7888888887753

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.87  E-value=4.2e-21  Score=201.26  Aligned_cols=289  Identities=13%  Similarity=0.055  Sum_probs=185.3

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +++..+++|    +++++++|.+.     .|..+||++|+.+++.++++|||+|++.++.|++.+....    ..+...|
T Consensus        80 ~~p~~~~le----~~lA~l~g~~~-----~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~----~~l~~~G  146 (415)
T 2fq6_A           80 GTLTHFSLQ----QAMCELEGGAG-----CVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCS----KILSKLG  146 (415)
T ss_dssp             CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHH----HTGGGGT
T ss_pred             CCchHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHH----HHHHHcC
Confidence            456666666    67889999863     3556899999999999999999999999998876542110    0112235


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHH--hCCEEEEechhhcccccccc
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADA--VGALLMMDMAHISGLVAASV  288 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~--~g~~li~D~Ah~~gli~~~~  288 (520)
                      .  ++..++.+      |++++++++++ +||+|++..++||+  ..|+++|+++|++  +|+++++|++|..+..    
T Consensus       147 ~--~v~~v~~~------d~~~le~ai~~-~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~----  213 (415)
T 2fq6_A          147 V--TTSWFDPL------IGADIVKHLQP-NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVL----  213 (415)
T ss_dssp             C--EEEEECTT------CGGGGGGGCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTS----
T ss_pred             c--EEEEECCC------CHHHHHHhhcc-CCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCccccc----
Confidence            4  55554432      88999999987 89999999888886  7899999999999  9999999999876532    


Q ss_pred             cCCCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCC-CCCCCCChHHHHHHHHHHHHHhcCchh
Q 010008          289 VADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEF  363 (520)
Q Consensus       289 ~~~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~-p~~~g~p~~~~iaala~al~~~~~~~~  363 (520)
                       ..|+. ++|++++|+||++.|+.   +|++++++      ++.+++..... .+.  .......+.+..+++     .+
T Consensus       214 -~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~------~~~~~l~~~~~~~G~--~~~~~~a~~~~~~l~-----~l  279 (415)
T 2fq6_A          214 -FKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNA------RCWEQLRENAYLMGQ--MVDADTAYITSRGLR-----TL  279 (415)
T ss_dssp             -SCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECT------TTHHHHHHHHHHTTC--CCCHHHHHHHHHHHH-----HH
T ss_pred             -CCccccCCeEEEEeCccccCCCCCceEEEEEeCH------HHHHHHHHHHHhcCC--CCCHHHHHHHHhhhh-----HH
Confidence             22344 68999999999997754   69999887      34444432111 111  111111111112233     23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHC-CCE-EecCC---------------CCCeeEEEEecCCCCCHHHHHHHHhhc---CeEE
Q 010008          364 KVYQNKVVSNCRALASRLVEL-GYK-LVSGG---------------SDNHLVLVDLRPMGIDGARVEKILDMA---SITL  423 (520)
Q Consensus       364 ~~~~~~i~~na~~l~~~L~~~-G~~-v~~~g---------------t~~~~~~vd~~~~g~~~~~~~~~L~~~---gI~v  423 (520)
                      ....++..+|++.+++.|.+. ++. +..++               ....++.+.+.. +.+...+.++|+..   +|.+
T Consensus       280 ~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g-~~~~~~~~~~l~~l~~~~~a~  358 (415)
T 2fq6_A          280 GVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKK-KLNNEELANYLDNFSLFSMAY  358 (415)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESS-CCCHHHHHHHHTTCSSCEECS
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC-CCCHHHHHHHHHhCCcCeEec
Confidence            455677788999999999874 333 21221               123455666642 11234556666554   4555


Q ss_pred             cCCCC--------CCCC--------CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          424 NKNSV--------PGDK--------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       424 ~~~~~--------Pg~~--------~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      +.+..        |+..        -....+.||+|+...++    +++++.+.+++++
T Consensus       359 s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~----~d~i~~l~~al~~  413 (415)
T 2fq6_A          359 SWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDV----DDLIADLDAGFAR  413 (415)
T ss_dssp             CCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCH----HHHHHHHHHHHHT
T ss_pred             cCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCH----HHHHHHHHHHHHh
Confidence            54311        2110        01124689999875443    6777777777653

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.86  E-value=1.5e-20  Score=203.78  Aligned_cols=340  Identities=15%  Similarity=0.121  Sum_probs=205.4

Q ss_pred             cceEecCCC-CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCceeeecCChH-H
Q 010008           95 SLELIASEN-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGS-P  170 (520)
Q Consensus        95 ~i~Liasen-~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V~~~sGs-~  170 (520)
                      .|+|..+++ +.++.+.+++...+..   .+||...  ++.   ...+.++..++.+.++..  .... .+|.+++|+ +
T Consensus       106 ~i~l~~g~~~~~~~~~~~al~~~~~~---~~Y~~~~--g~~---~lr~~ia~~~~~~~~~~~~~~~~~-~~I~~t~G~~e  176 (546)
T 2zy4_A          106 SLSYVRDQLGLDPAAFLHEMVDGILG---CNYPVPP--RML---NISEKIVRQYIIREMGADAIPSES-VNLFAVEGGTA  176 (546)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHHHT---CSCCSSS--SCC---HHHHHHHHHHHHHHTTCTTSCGGG-EEEEEEEHHHH
T ss_pred             hhecccCCCCCCChHHHHHHHHhhhc---CCCCCCc--CCH---HHHHHHHHHHHHHhccCCCCCCCc-ceEEEECCHHH
Confidence            455555554 4567777777665531   2454421  111   234455556666666441  1001 267778888 8


Q ss_pred             HHHHHHHh-----hCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCC-CCCCHHHHHHHhhhcCCc
Q 010008          171 ANFEVYTA-----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILFRPK  244 (520)
Q Consensus       171 A~~~~l~a-----ll~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~-~~iD~d~le~~i~~~~pk  244 (520)
                      |+..++.+     +++|||+|++++|.|.++..        ...+.+.+.+++++++++++ +.+|+++|++.++. ++|
T Consensus       177 al~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~--------~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-~~k  247 (546)
T 2zy4_A          177 AMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIE--------IPELAQYALEEVAINADPSLNWQYPDSELDKLKDP-AIK  247 (546)
T ss_dssp             HHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHH--------HHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGST-TEE
T ss_pred             HHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHH--------HHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCC-CCe
Confidence            99888877     58999999999998765421        11123333467777776443 67999999988765 899


Q ss_pred             EEEEcCCCCCC--CCC---HHHHHHHH--HHhCCEEEEechhhcccccccccCCCC---CcccEEEeccCccc--CCCCc
Q 010008          245 LIIAGASAYPR--DFD---YPRMRQIA--DAVGALLMMDMAHISGLVAASVVADPF---KYCDVVTTTTHKSL--RGPRG  312 (520)
Q Consensus       245 lIi~~~s~~p~--~~d---~~~i~~ia--~~~g~~li~D~Ah~~gli~~~~~~~p~---~~aDiv~~S~hK~l--~Gprg  312 (520)
                      +|++++++||+  ..+   +++|.++|  +++|++||+|++|. ++...  ..+.+   ...++++.|+||++  +|+|.
T Consensus       248 ~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~-~~~~~--~~s~~~~~~~~~i~~~S~SK~~g~~GlRi  324 (546)
T 2zy4_A          248 IFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYG-TFADD--FQSLFAICPENTLLVYSFSKYFGATGWRL  324 (546)
T ss_dssp             EEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTG-GGSTT--CCCHHHHCGGGEEEEEESTTTTTCGGGCE
T ss_pred             EEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcch-hhccc--CcCHHHhCCCCEEEEEeCccccCCCCcce
Confidence            99998999997  555   66678888  77899999999964 33321  11111   13568899999987  68899


Q ss_pred             eEEEeeCCCcchhhHHHhhcccC-----------------------------------CCCC-CCCChHHHHHHHHHHH-
Q 010008          313 GMIFFKKDPVLGVELESAINNAV-----------------------------------FPGL-QGGPHNHTIGGLAVCL-  355 (520)
Q Consensus       313 G~I~~~~~~~~~~~l~~~i~~~~-----------------------------------~p~~-~g~p~~~~iaala~al-  355 (520)
                      ||++++++     ++.+++....                                   .... .+.+...+.+....++ 
T Consensus       325 G~~~~~~~-----~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~  399 (546)
T 2zy4_A          325 GVVAAHQQ-----NVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLF  399 (546)
T ss_dssp             EEEEEESS-----CHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHH
T ss_pred             EEEEECCH-----HHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHH
Confidence            99999884     2433331100                                   0011 1222332332111011 


Q ss_pred             HHhc-Cchh-HHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCC---------------CCC-HHHHHHHHh
Q 010008          356 KHAQ-SPEF-KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM---------------GID-GARVEKILD  417 (520)
Q Consensus       356 ~~~~-~~~~-~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~---------------g~~-~~~~~~~L~  417 (520)
                      ..+. ...+ ++..+.+.++++.+.+.|. .++.+.. ...+.++|+++...               +.+ .+.+.+.|+
T Consensus       400 all~~~~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~  477 (546)
T 2zy4_A          400 ALMDEADEYKHTLKQLIRRRETTLYRELG-MPPLRDE-NAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIAD  477 (546)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHHHHGGGT-SSCCCCT-TBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHhcC-CCcccCC-CCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHH
Confidence            1111 1233 5556666667777777774 4443222 22355667786420               112 245778889


Q ss_pred             hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          418 MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       418 ~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      +.||.+.    ||.......+++||++..     .++++++++++.|++++...
T Consensus       478 ~~gV~v~----pG~~F~~~~~~iRis~~~-----~~~e~i~~~~~~l~~~l~~~  522 (546)
T 2zy4_A          478 ETGIVLL----PGRGFGSNRPSGRASLAN-----LNEYEYAAIGRALRKMADEL  522 (546)
T ss_dssp             HHSCCCE----ESSCTTCSSCEEEEESSS-----SCHHHHHHHHHHHHHHHHHH
T ss_pred             HCCEEEe----CccccCCCCCeEEEEecc-----CCHHHHHHHHHHHHHHHHHH
Confidence            9999994    554311135689999753     34799999999999987654

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.86  E-value=1.1e-20  Score=197.99  Aligned_cols=354  Identities=15%  Similarity=0.173  Sum_probs=210.4

Q ss_pred             hccccChH-HHHHHHHHHHHhhccceEecC----C---CCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHH
Q 010008           73 SLGEADPE-VCEIITKEKERQFKSLELIAS----E---NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLC  144 (520)
Q Consensus        73 ~l~~~d~~-~~~~~~~e~~~~~~~i~Lias----e---n~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a  144 (520)
                      .+...+|+ ++.+.++-++.....|||..+    +   .++.+.|++|....+.+..+.+|++   ..|.   .++.+.+
T Consensus        23 ~v~~~p~d~i~~l~~~~~~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p---~~G~---p~lr~ai   96 (420)
T 4h51_A           23 KIQAQAPDVIFDLAKRAAAAKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLP---ISGY---QPFIDEA   96 (420)
T ss_dssp             TCCCCCCCHHHHHHHHHHHCCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCC---TTCC---HHHHHHH
T ss_pred             CCCCCCCChHHHHHHHHhcCCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCC---cCCh---HHHHHHH
Confidence            35555555 566554433322346888765    2   2567999999887776666556654   2333   3454444


Q ss_pred             HHHHHHHcCCCCC-CCceeeecCChHHHHHHHHH----hhCCCCCEEEEcCCCCCccccccccccccccccccce-EEEE
Q 010008          145 QKRALAAFNLDEN-KWGVNVQPLSGSPANFEVYT----AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESM  218 (520)
Q Consensus       145 ~~~~~~lfg~~~~-~~~~~V~~~sGs~A~~~~l~----all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~-~~~v  218 (520)
                      .++   +||-+.. .-...++..+|+.|+..++.    ++++|||+|++++|.++.|..        .+...|.. +...
T Consensus        97 a~~---~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~--------i~~~aG~~~V~~~  165 (420)
T 4h51_A           97 VKI---IYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYG--------VVKAAGWKNICTY  165 (420)
T ss_dssp             HHH---HHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHH--------HHHHTTCCCEEEE
T ss_pred             HHH---hcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHH--------HHHHcCCeEEEee
Confidence            333   3554321 11134566677766654443    456899999999998876632        23344542 2222


Q ss_pred             EcccCCCCCCCCHHHHHHHhhhc--CCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCC
Q 010008          219 PYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD  291 (520)
Q Consensus       219 ~~~~d~~~~~iD~d~le~~i~~~--~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~  291 (520)
                      ++ .+++++.+|.+.+.+.+...  ++++++.+.++||+  ..   ++++|.++|+++++++++|++ |.++.+.+....
T Consensus       166 ~~-~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~-Y~~~~~~~~~~~  243 (420)
T 4h51_A          166 AY-YDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSA-YQGYASGSLDTD  243 (420)
T ss_dssp             EC-EEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEES-CTTTTTSCHHHH
T ss_pred             cc-ccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehh-hhhhccCCcccc
Confidence            22 23456788999988877542  45677778899997  33   578999999999999999999 667766543221


Q ss_pred             CC------C-c-ccEEEeccCccc--CCCCceEEEeeCCCc-chhhHHHhhcccCCCCCCCCChHHHHHHHHHHHH----
Q 010008          292 PF------K-Y-CDVVTTTTHKSL--RGPRGGMIFFKKDPV-LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK----  356 (520)
Q Consensus       292 p~------~-~-aDiv~~S~hK~l--~GprgG~I~~~~~~~-~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~----  356 (520)
                      ++      . + .-+++.|++|++  +|+|.|++++..+.. ....+...+......... .|..+.....+..+.    
T Consensus       244 ~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s-~~p~~~a~~~~~~l~d~~l  322 (420)
T 4h51_A          244 AYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYT-CPPAHGARLAHLILSNNEL  322 (420)
T ss_dssp             THHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTS-SCCHHHHHHHHHHHHSHHH
T ss_pred             hHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccC-cchHHHHHHHHHHhcCHHH
Confidence            11      0 1 127789999975  899999998876421 001112222222122222 333333222222222    


Q ss_pred             -HhcCchhHHHHHHHHHHHHHHHHHHHHCCCE----EecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCC
Q 010008          357 -HAQSPEFKVYQNKVVSNCRALASRLVELGYK----LVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD  431 (520)
Q Consensus       357 -~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~----v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~  431 (520)
                       .....+.+.+.+++.++++.|.+.|.+.|..    .+... ...+.+     .+++.+.+ ++|+++||.+    +|+ 
T Consensus       323 ~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q-~GmF~~-----~gls~e~v-~~L~e~~Vy~----~~~-  390 (420)
T 4h51_A          323 RKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQ-IGMFSF-----LGLSKAQC-EYCQNHNIFI----TVS-  390 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHC-CSSEEE-----CCCCHHHH-HHHHHTTEEC----CTT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCC-CceEEe-----cCcCHHHH-HHHHhCCEEE----cCC-
Confidence             1111234667788889999999999887632    12211 123333     24566665 5788999987    332 


Q ss_pred             CCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          432 KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       432 ~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                             | ||+...     ++++.+++++++|+++++..
T Consensus       391 -------g-Ris~Ag-----l~~~ni~~~a~aI~~vvr~i  417 (420)
T 4h51_A          391 -------G-RANMAG-----LTHETALMLAQTINDAVRNV  417 (420)
T ss_dssp             -------C-EEEGGG-----CCHHHHHHHHHHHHHHHC--
T ss_pred             -------C-EEEecc-----CCHHHHHHHHHHHHHHHHHh
Confidence                   2 998754     55799999999999998753

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.86  E-value=6.3e-21  Score=197.56  Aligned_cols=327  Identities=15%  Similarity=0.136  Sum_probs=197.7

Q ss_pred             ccceEecCC---C----CChHHHHHHHhh-hhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--CCCCCceee
Q 010008           94 KSLELIASE---N----FTSRAVMEAVGS-CLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNV  163 (520)
Q Consensus        94 ~~i~Liase---n----~~~~~V~ea~~s-~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--~~~~~~~~V  163 (520)
                      +.|+|..+.   +    ++++.|++++.. .+.+....+|+.   ..|.   .++++...+++....+.  +++.  ++|
T Consensus        27 ~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~---~~g~---~~lr~~la~~~~~~~~~~~~~~~--~~i   98 (397)
T 3fsl_A           27 DKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLP---MEGL---NCYRHAIAPLLFGADHPVLKQQR--VAT   98 (397)
T ss_dssp             CCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCC---TTCC---HHHHHHHHHHHHCTTCHHHHTTC--EEE
T ss_pred             CeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCC---CCch---HHHHHHHHHHHhcCCcccccccc--eEE
Confidence            568887772   2    234899999998 776433344543   1122   24443333333322221  3331  134


Q ss_pred             ecCChH-HHHHHH--HHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccC-CCCCCCCHHHHHHHhh
Q 010008          164 QPLSGS-PANFEV--YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTGLVDYDMLEKTAI  239 (520)
Q Consensus       164 ~~~sGs-~A~~~~--l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d-~~~~~iD~d~le~~i~  239 (520)
                      .+++|+ +|+..+  +.++++|||+|++.+|.|.++..        .+...|.  +++.++++ .+++.+|++++++.++
T Consensus        99 ~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~  168 (397)
T 3fsl_A           99 IQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVA--------IFAGAGF--EVSTYPWYDEATNGVRFNDLLATLK  168 (397)
T ss_dssp             EEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHH--------HHHHTTC--CEEEECCEETTTTEECHHHHHHHHT
T ss_pred             EEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHH--------HHHHcCC--ceEEEeeeeccCCcCcHHHHHHHHH
Confidence            556666 899888  45678999999999998765421        2334455  55555552 2468899999999998


Q ss_pred             hc--CCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhccccccc-ccCCCC------CcccEEEeccCc
Q 010008          240 LF--RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAAS-VVADPF------KYCDVVTTTTHK  305 (520)
Q Consensus       240 ~~--~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~-~~~~p~------~~aDiv~~S~hK  305 (520)
                      ..  ++++++++.++||+  ..   ++++|+++|+++|+++|+|++|. ++...+ ....++      ....+++.|+||
T Consensus       169 ~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  247 (397)
T 3fsl_A          169 TLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQ-GFGAGMEEDAYAIRAIASAGLPALVSNSFSK  247 (397)
T ss_dssp             TCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TSSSCTTGGGHHHHHHHHTTCCEEEEEECTT
T ss_pred             hCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCch-hhccCcccccHHHHHHHhcCCCEEEEecccc
Confidence            42  56788888888887  43   46689999999999999999964 433321 000011      123488899999


Q ss_pred             cc--CCCCceEEEeeCCCcchhhHHHhh----cccCCCCCCCCChHHHHHHHHHHHHHh-----cCchhHHHHHHHHHHH
Q 010008          306 SL--RGPRGGMIFFKKDPVLGVELESAI----NNAVFPGLQGGPHNHTIGGLAVCLKHA-----QSPEFKVYQNKVVSNC  374 (520)
Q Consensus       306 ~l--~GprgG~I~~~~~~~~~~~l~~~i----~~~~~p~~~g~p~~~~iaala~al~~~-----~~~~~~~~~~~i~~na  374 (520)
                      ++  +|+|.|+++.....   .++.+++    .........+.+.. ..++++.++...     ...+.++..+++.+++
T Consensus       248 ~~~~~G~riG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~  323 (397)
T 3fsl_A          248 IFSLYGERVGGLSVMCED---AEAAGRVLGQLKATVRRNYSSPPNF-GAQVVAAVLNDEALKASWLKEVEEMRTRILAMR  323 (397)
T ss_dssp             TTTCGGGCCEEEEEECSS---HHHHHHHHHHHHHHHHTTTSSCCSH-HHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCcCCCeeEEEEecCC---HHHHHHHHHHHHHHHHhccCCCCHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            87  58888999863210   0333222    11111122222222 222222223210     0123466778888899


Q ss_pred             HHHHHHHHHC----CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCcccc
Q 010008          375 RALASRLVEL----GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTR  450 (520)
Q Consensus       375 ~~l~~~L~~~----G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~  450 (520)
                      +.+.+.|.+.    |+.+..+. .+.+.|+++     +.+.+.+.|+++||.+.    ||        + ||+...+   
T Consensus       324 ~~l~~~L~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~l~~~gi~v~----~g--------~-Ris~~~~---  381 (397)
T 3fsl_A          324 QELVKVLSTEMPERNFDYLLNQ-RGMFSYTGL-----SAAQVDRLREEFGVYLI----AS--------G-RMCVAGL---  381 (397)
T ss_dssp             HHHHHHHHHHCTTSCCTHHHHC-CSSEEECCC-----CHHHHHHHHHTTCEECC----TT--------C-EEEGGGC---
T ss_pred             HHHHHHHHhcCCCCCceeecCC-ceEEEecCC-----CHHHHHHHHHhCCEEEC----CC--------C-eEEEEec---
Confidence            9999999874    66655432 234445443     46778889999999993    33        1 8876533   


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 010008          451 GFSEKEFVAIADFIHEG  467 (520)
Q Consensus       451 g~~~~d~~~la~~i~~~  467 (520)
                        ++++++++++.|+++
T Consensus       382 --~~~~i~~~~~~l~~~  396 (397)
T 3fsl_A          382 --NTANVQRVAKAFAAV  396 (397)
T ss_dssp             --CTTTHHHHHHHHHHH
T ss_pred             --CHhhHHHHHHHHHhh
Confidence              357899999988765

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.86  E-value=3.1e-20  Score=196.57  Aligned_cols=351  Identities=17%  Similarity=0.180  Sum_probs=207.6

Q ss_pred             hhccccChH-HHHHHHHHHHHhh-ccceEecCCC-------CChHHHHHHHhhhh--hccCCCCCCCCCCCCcchhHHHH
Q 010008           72 YSLGEADPE-VCEIITKEKERQF-KSLELIASEN-------FTSRAVMEAVGSCL--TNKYSEGLPGKRYYGGNEYIDEL  140 (520)
Q Consensus        72 ~~l~~~d~~-~~~~~~~e~~~~~-~~i~Liasen-------~~~~~V~ea~~s~l--~~~y~~G~p~~ryy~g~~~~d~l  140 (520)
                      ..+...++. ++.+...-..... ..|+|..+..       ++.++|.+++....  ......+|+.   ..|   ..++
T Consensus        26 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~---~~G---~~~l   99 (448)
T 3meb_A           26 SGFPASPPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPP---VAG---FPLF   99 (448)
T ss_dssp             TTCCCCCCCTTHHHHHHHHHCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCC---TTC---CHHH
T ss_pred             hcCCCCCCChHHHHHHHHHhCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCC---Ccc---hHHH
Confidence            335555554 5555543333222 3478765432       35678888866544  1122334432   122   2334


Q ss_pred             HHHHHHHHHHH-cCCC-----CCCCceeeecCChHHHHHH--HHHhhCCCCCEEEEcCCCCCccccccccccccccc---
Q 010008          141 ETLCQKRALAA-FNLD-----ENKWGVNVQPLSGSPANFE--VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS---  209 (520)
Q Consensus       141 E~~a~~~~~~l-fg~~-----~~~~~~~V~~~sGs~A~~~--~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~---  209 (520)
                      .    +.++++ +|.+     ++++ +.+|+.+|++|+..  .+.++++|||+|++++|.|.+|..        .+.   
T Consensus       100 r----~~ia~~l~g~~~~~~~~~~i-~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~--------~~~~~~  166 (448)
T 3meb_A          100 L----EAAQFLMFGKDSKAAQEGRI-ASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYG--------IYDKVF  166 (448)
T ss_dssp             H----HHHHHHHHCTTCHHHHTTCE-EEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHH--------HHHHHH
T ss_pred             H----HHHHHHhcCCCccccCcCcE-EEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHH--------HHHhhH
Confidence            3    334444 4877     4433 22335556689876  567788999999999998876532        223   


Q ss_pred             -cccceEEEEEccc-CCC-CCCCCHHHHHHHhhhc--CCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechh
Q 010008          210 -GTSIYFESMPYRL-DES-TGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAH  279 (520)
Q Consensus       210 -~~g~~~~~v~~~~-d~~-~~~iD~d~le~~i~~~--~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah  279 (520)
                       ..|.  +++.+++ +++ ++.+|++++++.+++.  ++++++++.++||+  ..+   +++|.++|+++|+++++|++|
T Consensus       167 ~~~G~--~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay  244 (448)
T 3meb_A          167 NKLKV--PYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAY  244 (448)
T ss_dssp             CTTTS--CCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred             HhCCC--eEEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEeccc
Confidence             4454  5666666 544 5899999999999852  46777888899987  444   666999999999999999994


Q ss_pred             hccccccccc--CCCC-----Cccc-EEEeccCccc--CCCCceEE--Ee--------eCCCcchhhHHHhhcccCCCCC
Q 010008          280 ISGLVAASVV--ADPF-----KYCD-VVTTTTHKSL--RGPRGGMI--FF--------KKDPVLGVELESAINNAVFPGL  339 (520)
Q Consensus       280 ~~gli~~~~~--~~p~-----~~aD-iv~~S~hK~l--~GprgG~I--~~--------~~~~~~~~~l~~~i~~~~~p~~  339 (520)
                       .++...+..  ..++     .+.+ +++.|+||++  .|+|.|++  ++        .++. ...++.+.+........
T Consensus       245 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~  322 (448)
T 3meb_A          245 -QGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKA-LSAAMVSGMTLQIRKTW  322 (448)
T ss_dssp             -TTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHH-HHHHHHHHHHHHHHTTT
T ss_pred             -ccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHH-HHHHHHHHHHHHHhccc
Confidence             444433210  0011     1223 7789999987  58888998  65        3210 00013333332222222


Q ss_pred             CCCChHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHHHHHHCCCE---------EecCCCCCeeEEEEecCC
Q 010008          340 QGGPHNHTIGGLAVCLKHAQ-----SPEFKVYQNKVVSNCRALASRLVELGYK---------LVSGGSDNHLVLVDLRPM  405 (520)
Q Consensus       340 ~g~p~~~~iaala~al~~~~-----~~~~~~~~~~i~~na~~l~~~L~~~G~~---------v~~~gt~~~~~~vd~~~~  405 (520)
                      .+. +.....+.+.+|....     ..+.++..+++.++++.+.+.|.+.|++         +..+. ...+.|+++   
T Consensus       323 ~~~-~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~---  397 (448)
T 3meb_A          323 SMS-AIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTA-IGMFTFTGL---  397 (448)
T ss_dssp             SSC-CHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHC-CSSEEECCC---
T ss_pred             CCc-cHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCC-ceEEEecCC---
Confidence            233 3333333333332110     0124666788888999999999886432         22221 233444333   


Q ss_pred             CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          406 GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       406 g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                        +.+.+..+|+++||.+    .||.        .||+...     +++++++++++.|.++++
T Consensus       398 --~~~~~~~ll~~~gV~v----~~G~--------gRis~a~-----~~~~~i~~~~~~l~~~l~  442 (448)
T 3meb_A          398 --TPEHVDYLKEKWSIYL----VKAG--------GRMSMCG-----LTESNCDYVAEAIHDAVT  442 (448)
T ss_dssp             --CHHHHHHHHHHHCEEE----CSGG--------GEEEGGG-----CCTTTHHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHhCCEEE----eCCC--------cEEEEec-----CCHHHHHHHHHHHHHHHH
Confidence              4567777788999999    3432        2998753     345789999999999886

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.86  E-value=2.4e-20  Score=194.01  Aligned_cols=255  Identities=20%  Similarity=0.193  Sum_probs=168.1

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +++..++++    +++++++|.+.     .+.++||++|+.+++.+++++||+|++.++.|++.+....    ......|
T Consensus        64 ~~~~~~~l~----~~la~~~g~~~-----~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~----~~~~~~g  130 (392)
T 3qhx_A           64 GNPTRTALE----AALAAVEDAAF-----GRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLID----KVFTGWN  130 (392)
T ss_dssp             CCHHHHHHH----HHHHHHTTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH----HTGGGGT
T ss_pred             CChHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHH----HHHHhcC
Confidence            345555555    78889999873     3566899999999999999999999999998876432110    0112234


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .  +++.++++      |++++++++++ ++++|++..++||+  ..|+++|+++|+++|+++|+|++|..+..     .
T Consensus       131 ~--~~~~v~~~------d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~-----~  196 (392)
T 3qhx_A          131 V--EYTPVALA------DLDAVRAAIRP-TTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPAL-----Q  196 (392)
T ss_dssp             C--EEEEECTT------CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTT-----C
T ss_pred             c--EEEEeCCC------CHHHHHHhhCC-CCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence            3  56665542      89999999987 89999999888886  78999999999999999999999865422     2


Q ss_pred             CCCC-cccEEEeccCcccCCC---CceEEEeeCCCcchhhHHHhhcccCC-CCCCCCChHHHHHHHHHHHHHhcCchhHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKV  365 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gp---rgG~I~~~~~~~~~~~l~~~i~~~~~-p~~~g~p~~~~iaala~al~~~~~~~~~~  365 (520)
                      .++. ++|+++.|+||++.|+   ++|+++++++     ++.+.+..... .+...+ .....+    ++..+.  .+..
T Consensus       197 ~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~-----~~~~~l~~~~~~~g~~~~-~~~~~~----~~~~l~--~l~~  264 (392)
T 3qhx_A          197 QPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDE-----ELDQSFAFLQNGAGAVPG-PFDAYL----TMRGLK--TLVL  264 (392)
T ss_dssp             CGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCH-----HHHHHHHHHHHHHCCCCC-HHHHHH----HHHHHT--THHH
T ss_pred             ChHHhCCcEEEEcCccccCCCCCceEEEEEECcH-----HHHHHHHHHHHhcCCCCC-HHHHHH----HHhhhh--HHHH
Confidence            2333 6899999999999664   5899999863     55555543211 111222 111111    222221  2455


Q ss_pred             HHHHHHHHHHHHHHHHHHC-CCEEe-cCCC---------------CCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCC
Q 010008          366 YQNKVVSNCRALASRLVEL-GYKLV-SGGS---------------DNHLVLVDLRPMGIDGARVEKILDMASITLNKN  426 (520)
Q Consensus       366 ~~~~i~~na~~l~~~L~~~-G~~v~-~~gt---------------~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~  426 (520)
                      ..++..++++.+.+.|.+. ++..+ .++-               ...++.+.+......++.+.+.|+..+|.++.+
T Consensus       265 ~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G  342 (392)
T 3qhx_A          265 RMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLG  342 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCCC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCCC
Confidence            6778888999999999873 44322 2221               123556666431122344555566667776544

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.86  E-value=6.6e-21  Score=198.73  Aligned_cols=344  Identities=16%  Similarity=0.149  Sum_probs=200.0

Q ss_pred             hhccccChH-HHHHHHHHHHHhh-ccceEecCCC---CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHH
Q 010008           72 YSLGEADPE-VCEIITKEKERQF-KSLELIASEN---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQK  146 (520)
Q Consensus        72 ~~l~~~d~~-~~~~~~~e~~~~~-~~i~Liasen---~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~  146 (520)
                      +++....|+ ++.+......... +.|+|..++.   ..++.+.+++..... ....+|..      .....++++    
T Consensus        18 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a~~-~~~~~y~~------~~g~~~lr~----   86 (409)
T 4eu1_A           18 GPGSMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQATL-GTNMDYAP------VTGIASFVE----   86 (409)
T ss_dssp             ---------CHHHHHHHHHHCCCSSCEECCCSSCCCTTSCCCCCHHHHTCCC-CSCCCCCC------TTCCHHHHH----
T ss_pred             hcCCCCCCChHHHHHHHHhhCCCcCceeeeeeEEECCCCCEeecHHHHhcCc-cccccCCC------CCCcHHHHH----
Confidence            446666666 6766655444333 5688876652   345667777765521 11223322      111234443    


Q ss_pred             HHHHH-cCCC-----CCCCceeeecCChHHHHHHH---HHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEE
Q 010008          147 RALAA-FNLD-----ENKWGVNVQPLSGSPANFEV---YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES  217 (520)
Q Consensus       147 ~~~~l-fg~~-----~~~~~~~V~~~sGs~A~~~~---l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~  217 (520)
                      .++++ +|.+     ++++ ..+++.+|++|+.++   +.+++++||+|++++|.|.++..        .+...|.  ++
T Consensus        87 ~ia~~~~~~~~~~~~~~~i-~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~  155 (409)
T 4eu1_A           87 EAQKLCFGPTCAALRDGRI-ASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHES--------IFAKAGM--EL  155 (409)
T ss_dssp             HHHHHHHCSSCHHHHTTCE-EEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHH--------HHHHTTC--EE
T ss_pred             HHHHHHcCCCchhhccCce-eeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHH--------HHHHcCC--eE
Confidence            33333 4665     3322 112345555777654   45668999999999998866531        2334565  66


Q ss_pred             EEcccC-CCCCCCCHHHHHHHhhhc--CCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhccccccccc
Q 010008          218 MPYRLD-ESTGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV  289 (520)
Q Consensus       218 v~~~~d-~~~~~iD~d~le~~i~~~--~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~  289 (520)
                      +.++++ .+++.+|++++++.++..  ++++++++.++||+  .++   +++|.++|+++|+++|+|++|. ++...+..
T Consensus       156 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~-~~~~~~~~  234 (409)
T 4eu1_A          156 TPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQ-GFATGQLD  234 (409)
T ss_dssp             EEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TTTTSCHH
T ss_pred             EEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccc-ccccCCcc
Confidence            666663 345789999999999742  45666778899987  555   5569999999999999999954 44433210


Q ss_pred             --CCC---C-C-c-ccEEEeccCccc--CCCCceEE--EeeCCCcchhh----HHHhhcccCCCCCCCCChHHHHHHHHH
Q 010008          290 --ADP---F-K-Y-CDVVTTTTHKSL--RGPRGGMI--FFKKDPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAV  353 (520)
Q Consensus       290 --~~p---~-~-~-aDiv~~S~hK~l--~GprgG~I--~~~~~~~~~~~----l~~~i~~~~~p~~~g~p~~~~iaala~  353 (520)
                        ..+   + . . ..+++.|++|++  +|+|.|++  ++.++     +    +.+.+......+..+.+.. ..++.+.
T Consensus       235 ~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~  308 (409)
T 4eu1_A          235 YDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASA-----EEAKRLVSQLALLIRPMYNNPPLY-GAWVVSS  308 (409)
T ss_dssp             HHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSH-----HHHHHHHHHHHHHHHHHHSSCCHH-HHHHHHH
T ss_pred             cchHHHHHHHhhCCcEEEEecCcccccCccCCceEEEEEeCCH-----HHHHHHHHHHHHHHhhhcCCCChH-HHHHHHH
Confidence              000   0 1 1 237889999986  68888997  55442     4    4444433221222223233 3333333


Q ss_pred             HHHHhc-----CchhHHHHHHHHHHHHHHHHHHHHCC----CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEc
Q 010008          354 CLKHAQ-----SPEFKVYQNKVVSNCRALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN  424 (520)
Q Consensus       354 al~~~~-----~~~~~~~~~~i~~na~~l~~~L~~~G----~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~  424 (520)
                      +++...     ....++..+++.++++.+.+.|.+.|    +++..+. .+.+.|++     ++.+.+.++|+++||.+.
T Consensus       309 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~ll~~~gv~v~  382 (409)
T 4eu1_A          309 ILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIERQ-VGMMAYTG-----LTREQVELLRSEYHIYMT  382 (409)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHS-CSSEEECC-----CCHHHHHHHHHHHCEECC
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCC-ceEEEEeC-----CCHHHHHHHHHcCCEEEc
Confidence            444210     12246677888899999999999877    5544331 23444433     345667778888999983


Q ss_pred             CCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          425 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       425 ~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                          |+         .||++...     +++|++++++.|.+++
T Consensus       383 ----p~---------~Ri~~~~~-----~~~~i~~~~~~l~~~l  408 (409)
T 4eu1_A          383 ----LN---------GRAAVSGL-----NSTNVEYVSQAIHNVT  408 (409)
T ss_dssp             ----TT---------CEEEGGGC-----CTTTHHHHHHHHHHHH
T ss_pred             ----CC---------CEEEEEec-----CHhhHHHHHHHHHHHh
Confidence                32         37776543     4578999999998765

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.86  E-value=2e-20  Score=193.92  Aligned_cols=315  Identities=14%  Similarity=0.088  Sum_probs=196.8

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC--C
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--K  181 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all--~  181 (520)
                      +.++.|++++...+... ..+  . +.| ..+...+    .++++++++|+++++   .+..++|++|+.+++.++.  .
T Consensus        61 ~~~~~v~~a~~~~~~~~-~~~--~-~~~-~~~~~~~----l~~~la~~~~~~~~~---v~~~~gg~~a~~~al~~~~~~~  128 (395)
T 1vef_A           61 HGNPEVVEAVKRQAETL-MAM--P-QTL-PTPMRGE----FYRTLTAILPPELNR---VFPVNSGTEANEAALKFARAHT  128 (395)
T ss_dssp             BTCHHHHHHHHHHHHHC-CCC--C-TTS-CCHHHHH----HHHHHHHTSCTTEEE---EEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhC-CCC--c-ccc-CCHHHHH----HHHHHHHhcCCCcCE---EEEcCcHHHHHHHHHHHHHHHh
Confidence            47899999999887542 111  1 123 2233333    347888899876542   2334556699999888764  6


Q ss_pred             CCCEEEEcCCCCCccccccccccccccccccceEE-EEEcccCCCC---CCCCHHHHHHHhhhcCCcEEEEcCCCCCC--
Q 010008          182 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE-SMPYRLDEST---GLVDYDMLEKTAILFRPKLIIAGASAYPR--  255 (520)
Q Consensus       182 pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~-~v~~~~d~~~---~~iD~d~le~~i~~~~pklIi~~~s~~p~--  255 (520)
                      +||+|+++++.|.+.....       +...|.... ....++..+.   ...|+++|++++++ ++++|+++.+++++  
T Consensus       129 ~~~~vi~~~~~y~~~~~~~-------~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~  200 (395)
T 1vef_A          129 GRKKFVAAMRGFSGRTMGS-------LSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDE-ETAAVILEPVQGEGGV  200 (395)
T ss_dssp             SCCEEEEETTCCCCSSHHH-------HHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCT-TEEEEEECSEETTTTS
T ss_pred             CCCeEEEEcCCcCCCchhh-------hhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhcc-CEEEEEEeCccCCCCc
Confidence            8999999988764432111       112222100 0000111000   12589999999986 89999987655543  


Q ss_pred             CCC----HHHHHHHHHHhCCEEEEechhhcccccccccCCCC---C-cccEEEeccCcccC-CCCceEEEeeCCCcchhh
Q 010008          256 DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YCDVVTTTTHKSLR-GPRGGMIFFKKDPVLGVE  326 (520)
Q Consensus       256 ~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~---~-~aDiv~~S~hK~l~-GprgG~I~~~~~~~~~~~  326 (520)
                      ..+    +++|.++|+++|++||+|++|. |+...+.. .++   . ++|++  |+||++. |+|.|++++++      +
T Consensus       201 ~~~~~~~l~~i~~l~~~~~~~li~Dea~~-~~~~~g~~-~~~~~~~~~~d~~--s~sK~~~~g~~~G~~~~~~------~  270 (395)
T 1vef_A          201 RPATPEFLRAAREITQEKGALLILDEIQT-GMGRTGKR-FAFEHFGIVPDIL--TLAKALGGGVPLGVAVMRE------E  270 (395)
T ss_dssp             EECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSS-STHHHHTCCCSEE--EECGGGGTTSSCEEEEEEH------H
T ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccCCch-hHhhhcCCCCCEE--EEcccccCCCceEEEEehH------H
Confidence            557    9999999999999999999987 54322211 111   1 46877  6699985 46779999988      6


Q ss_pred             HHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEec-CCCCCeeEEEEecCC
Q 010008          327 LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVS-GGSDNHLVLVDLRPM  405 (520)
Q Consensus       327 l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~-~gt~~~~~~vd~~~~  405 (520)
                      +.+.+......... +++....++...+++....   .++.+++.++++.+.+.|.+.+.+++. ......++++++.. 
T Consensus       271 ~~~~l~~~~~~~~~-~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~~~~-  345 (395)
T 1vef_A          271 VARSMPKGGHGTTF-GGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLMVGLELKE-  345 (395)
T ss_dssp             HHHTSCTTSSCCSS-TTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETTEEEEEESS-
T ss_pred             HHhhhccCCcCCCc-CCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhcCceEEEEEEEEEEEEEEcC-
Confidence            76666542222222 2344444444456665432   345677888899999999876542211 00123566777753 


Q ss_pred             CCCHHHHHHHHh-hcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          406 GIDGARVEKILD-MASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       406 g~~~~~~~~~L~-~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                        +...+.+.|. +.||.+..    +     .++++||+++..    .+++|++++++.|++++
T Consensus       346 --~~~~l~~~l~~~~gi~v~~----~-----~~~~iRi~~~~~----~~~~~i~~~~~~l~~~l  394 (395)
T 1vef_A          346 --KAAPYIARLEKEHRVLALQ----A-----GPTVIRFLPPLV----IEKEDLERVVEAVRAVL  394 (395)
T ss_dssp             --CSHHHHHHHHHHHCEECEE----S-----STTEEEECCCTT----CCHHHHHHHHHHHHHHH
T ss_pred             --hHHHHHHHHHHHCCeEEec----C-----CCCEEEEeCCCC----CCHHHHHHHHHHHHHHh
Confidence              2466777777 89999853    2     257899987643    45899999999998765

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.86  E-value=2.2e-20  Score=195.75  Aligned_cols=289  Identities=18%  Similarity=0.183  Sum_probs=185.5

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +++..+++|    +++++++|.+.     .+.++||++|+.+++.++++|||+|+++++.|++......    ......|
T Consensus        79 ~~p~~~~l~----~~la~~~g~~~-----~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~----~~~~~~g  145 (414)
T 3ndn_A           79 GNPTVSVFE----ERLRLIEGAPA-----AFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCS----EILPRWG  145 (414)
T ss_dssp             CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHH----THHHHTT
T ss_pred             CChHHHHHH----HHHHHHHCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHH----HHHHHcC
Confidence            345566666    67889999753     3566899999999999999999999999998876432110    0011244


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .  +++.++.+      |++++++++++ ++|+|++..++||+  ..|+++|+++|+++|++||+|++|..+..     .
T Consensus       146 ~--~~~~v~~~------d~~~l~~ai~~-~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~-----~  211 (414)
T 3ndn_A          146 V--QTVFVDGD------DLSQWERALSV-PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLL-----Q  211 (414)
T ss_dssp             C--EEEEECTT------CHHHHHHHTSS-CCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHH-----C
T ss_pred             c--EEEEeCCC------CHHHHHHhcCC-CCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence            4  56665542      89999999987 89999999998887  78999999999999999999999876643     2


Q ss_pred             CCCC-cccEEEeccCcccCC---CCceEEEeeCCCcchhhHHH-hhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRG---PRGGMIFFKKDPVLGVELES-AINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV  365 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~G---prgG~I~~~~~~~~~~~l~~-~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~  365 (520)
                      .++. ++|+++.|+||++.|   +++|++++++      +... .+..... . .|+... ..++ +.+++.+  ..+..
T Consensus       212 ~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~------~~~~~~l~~~~~-~-~g~~~~-~~~a-~~~~~~l--~~l~~  279 (414)
T 3ndn_A          212 QGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDR------EYIDGPVQKLMR-H-TGPAMS-AFNA-WVLLKGL--ETLAI  279 (414)
T ss_dssp             CCGGGTCSEEEEETTTTTTCSSCCCCEEEEECH------HHHTTHHHHHHH-H-HCCCCC-HHHH-HHHHHHG--GGHHH
T ss_pred             CchhcCCCeEeccCCccccCCCCceEEEEEECH------HHHHHHHHHHHH-H-cCCCCC-HHHH-HHHHHHH--HHHHH
Confidence            3444 689999999999965   5689999987      3332 3331110 0 111111 1111 1223322  24566


Q ss_pred             HHHHHHHHHHHHHHHHHHC-CCEEe-cCCC---------------CCeeEEEEecCC----CCCHHHHHHHHhhcCeEEc
Q 010008          366 YQNKVVSNCRALASRLVEL-GYKLV-SGGS---------------DNHLVLVDLRPM----GIDGARVEKILDMASITLN  424 (520)
Q Consensus       366 ~~~~i~~na~~l~~~L~~~-G~~v~-~~gt---------------~~~~~~vd~~~~----g~~~~~~~~~L~~~gI~v~  424 (520)
                      ..++..+|++.+.+.|.+. ++..+ .++-               ...++++.+...    ......+.+.|+..+|.++
T Consensus       280 r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~s  359 (414)
T 3ndn_A          280 RVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNN  359 (414)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEECSC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEcCC
Confidence            7788899999999999873 44322 2221               134566777421    1112334455555666665


Q ss_pred             CCCC------CCCC------------CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          425 KNSV------PGDK------------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       425 ~~~~------Pg~~------------~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      .+..      |...            ....++.||++..        .++.+.+.+.|.+++
T Consensus       360 ~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG--------~e~~~dli~dl~~al  413 (414)
T 3ndn_A          360 LGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVG--------LEDTDDLIADIDRAL  413 (414)
T ss_dssp             CSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECC--------SSCHHHHHHHHHHHH
T ss_pred             CCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeC--------cCCHHHHHHHHHHhh
Confidence            4321      1100            0123567999864        366777777776654

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.85  E-value=4.9e-21  Score=199.68  Aligned_cols=323  Identities=16%  Similarity=0.122  Sum_probs=198.4

Q ss_pred             ccceEecCC--C-----CChHHHHHHHhhhhhcc-CCCCCCCCCCCCcchhHHHHHHHHHHHHHHHc-CC-----CCCCC
Q 010008           94 KSLELIASE--N-----FTSRAVMEAVGSCLTNK-YSEGLPGKRYYGGNEYIDELETLCQKRALAAF-NL-----DENKW  159 (520)
Q Consensus        94 ~~i~Liase--n-----~~~~~V~ea~~s~l~~~-y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lf-g~-----~~~~~  159 (520)
                      +.|+|..++  +     ++++.|.+++...+.+. ...+|..      .....+++    +.+++++ +.     +++++
T Consensus        31 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~------~~g~~~lr----~~la~~~~~~~~~~~~~~~v  100 (412)
T 1ajs_A           31 RKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLP------ILGLAEFR----TCASRLALGDDSPALQEKRV  100 (412)
T ss_dssp             TCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCC------TTCCHHHH----HHHHHHHHCTTCHHHHTTCE
T ss_pred             CceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCC------CCCCHHHH----HHHHHHHhcCCCCccCCCcE
Confidence            567887665  1     45689999998776221 1223321      11123444    3444444 32     44422


Q ss_pred             ceeeecCChHHHHHHHH--HhhCCCC-----CEEEEcCCCCCccccccccccccccccccceEE-EEEcccCC-CCCCCC
Q 010008          160 GVNVQPLSGSPANFEVY--TAILKPH-----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE-SMPYRLDE-STGLVD  230 (520)
Q Consensus       160 ~~~V~~~sGs~A~~~~l--~all~pG-----D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~-~v~~~~d~-~~~~iD  230 (520)
                       +.|++.+|++|+.+++  .++++||     |+|++++|.|.++..        .+...|.  + ++.+++++ +++.+|
T Consensus       101 -~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~d  169 (412)
T 1ajs_A          101 -GGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNG--------VFTTAGF--KDIRSYRYWDTEKRGLD  169 (412)
T ss_dssp             -EEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHH--------HHHHTTC--SCEEEEECEETTTTEEC
T ss_pred             -EEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHH--------HHHHcCC--ceeEEEeeecCCCCccC
Confidence             1112344559999885  3557899     999999998865421        2233454  4 44555532 457899


Q ss_pred             HHHHHHHhhhc--CCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhccccccc---cc-C-CCCC-ccc
Q 010008          231 YDMLEKTAILF--RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAAS---VV-A-DPFK-YCD  297 (520)
Q Consensus       231 ~d~le~~i~~~--~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~---~~-~-~p~~-~aD  297 (520)
                      ++++++.+++.  ++++|+++.++||+  ..   ++++|+++|+++|++||+|++|. ++...+   .. + ..+. ..|
T Consensus       170 ~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~-~~~~~~~~~~~~~~~~~~~~~~  248 (412)
T 1ajs_A          170 LQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQ-GFASGNLEKDAWAIRYFVSEGF  248 (412)
T ss_dssp             HHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCT-TTTTSCHHHHTHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccc-cccCCcccccchHHHHHhccCC
Confidence            99999998764  45677788888886  43   46689999999999999999943 443322   10 0 0011 123


Q ss_pred             --EEEeccCccc--CCCCceEEEe---eCCCcchhh----HHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc-----Cc
Q 010008          298 --VVTTTTHKSL--RGPRGGMIFF---KKDPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-----SP  361 (520)
Q Consensus       298 --iv~~S~hK~l--~GprgG~I~~---~~~~~~~~~----l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~-----~~  361 (520)
                        +++.|+||++  .|.|.|++++   ++      +    +.+.+.........+.+.. ..++...+|+...     ..
T Consensus       249 ~~i~~~s~sK~~~~~G~riG~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~l~~~~~~~~~~~  321 (412)
T 1ajs_A          249 ELFCAQSFSKNFGLYNERVGNLTVVAKEP------DSILRVLSQMQKIVRVTWSNPPAQ-GARIVARTLSDPELFHEWTG  321 (412)
T ss_dssp             CEEEEEECTTTSCCGGGCEEEEEEECSSH------HHHHHHHHHHHHHHHTTTSSCCSH-HHHHHHHHHHSHHHHHHHHH
T ss_pred             cEEEEEecccccCCCCcceEEEEEecCCH------HHHHHHHHHHHHHHhcccCCCChH-HHHHHHHHHcCcchhHHHHH
Confidence              8889999987  3677799998   54      4    3333333111112222233 3334444554321     12


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHCC----CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCC
Q 010008          362 EFKVYQNKVVSNCRALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVP  437 (520)
Q Consensus       362 ~~~~~~~~i~~na~~l~~~L~~~G----~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~  437 (520)
                      ..++..+++.++++.+.+.|.+.|    +.+..+. .+.+.|+++     +.+.+...|+++||.+.    |        
T Consensus       322 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~l~~~gv~v~----~--------  383 (412)
T 1ajs_A          322 NVKTMADRILSMRSELRARLEALKTPGTWNHITDQ-IGMFSFTGL-----NPKQVEYLINQKHIYLL----P--------  383 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHC-CSSEEECCC-----CHHHHHHHHHTTCEECC----T--------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCC-CceEEEeCC-----CHHHHHHHHHhCCEEec----C--------
Confidence            346677888889999999998865    6654432 234444433     35677788889999983    2        


Q ss_pred             CEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          438 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       438 ~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                       ++||++..     .+++|++++.+.|.++++
T Consensus       384 -~~Ris~~~-----~~~~~i~~~~~~l~~~l~  409 (412)
T 1ajs_A          384 -SGRINMCG-----LTTKNLDYVATSIHEAVT  409 (412)
T ss_dssp             -TSEEEGGG-----CCTTTHHHHHHHHHHHHH
T ss_pred             -CcEEEeee-----CCHHHHHHHHHHHHHHHH
Confidence             26998653     247899999999988875

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.85  E-value=1.8e-20  Score=197.37  Aligned_cols=292  Identities=16%  Similarity=0.120  Sum_probs=185.4

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      +++..+++|    +++++++|.+.     .|.++||++|+.+++.++++|||+|++.++.|++......    ..+...|
T Consensus        80 ~~p~~~~le----~~lA~l~g~~~-----~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~----~~~~~~G  146 (430)
T 3ri6_A           80 SNPTVEDLE----QRLKNLTGALG-----VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQ----KTLPSFG  146 (430)
T ss_dssp             CCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH----THHHHTT
T ss_pred             CCHHHHHHH----HHHHHHHCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHH----HHHHHcC
Confidence            456667777    67888999865     3566899999999999999999999999998876532110    0122335


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .  +++.++.+      |++++++++++ ++|+|++..++||+  ..|+++|+++|+++|++||+|++|..+..     .
T Consensus       147 ~--~~~~v~~~------d~~~l~~ai~~-~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~-----~  212 (430)
T 3ri6_A          147 I--EVRFVDVM------DSLAVEHACDE-TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYL-----L  212 (430)
T ss_dssp             C--EEEEECTT------CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTT-----C
T ss_pred             C--EEEEeCCC------CHHHHHHhhCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence            4  56665543      89999999988 89999999998886  78999999999999999999999876643     2


Q ss_pred             CCCC-cccEEEeccCcccCCC---CceEEEeeCCCcc-----hhh---------HHHhhcccCCCCCCCCChHHHHHHHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVL-----GVE---------LESAINNAVFPGLQGGPHNHTIGGLA  352 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gp---rgG~I~~~~~~~~-----~~~---------l~~~i~~~~~p~~~g~p~~~~iaala  352 (520)
                      .|.. ++|+++.|+||++.|+   .||+++.+.....     ..+         +..++...... ..|+......+.+ 
T Consensus       213 ~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~-~~g~~~~~~~a~l-  290 (430)
T 3ri6_A          213 EAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQ-NLGPSLSPHNAYL-  290 (430)
T ss_dssp             CGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHH-HHCCCCCHHHHHH-
T ss_pred             ChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHH-hcCCCCCHHHHHH-
Confidence            3344 6899999999999887   6788886543110     001         11111111000 1122111122221 


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEE-ecCCCC--------------Ce-eEEEEecCCCCCHHHHHHH
Q 010008          353 VCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKL-VSGGSD--------------NH-LVLVDLRPMGIDGARVEKI  415 (520)
Q Consensus       353 ~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v-~~~gt~--------------~~-~~~vd~~~~g~~~~~~~~~  415 (520)
                       +++.+  ..+....++..+|++.+++.|.+ .++.. ..++-.              .. ++++.+.    +.+.+.++
T Consensus       291 -~l~~l--~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~----~~~~~~~~  363 (430)
T 3ri6_A          291 -QSLGL--ETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELE----SKEASYRF  363 (430)
T ss_dssp             -HHHHH--HHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECS----SHHHHHHH
T ss_pred             -HHhhh--hhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEEC----CHHHHHHH
Confidence             22221  23455677888999999999987 46653 333311              22 6677764    23444455


Q ss_pred             Hhh---cCeEEcCCCC------CCC---C---------CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          416 LDM---ASITLNKNSV------PGD---K---------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       416 L~~---~gI~v~~~~~------Pg~---~---------~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      ++.   .++.++.+.+      |..   .         ....++.||++..        .|+.+.+.+.|++++
T Consensus       364 ~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG--------~E~~~dl~~dl~~al  429 (430)
T 3ri6_A          364 MDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVG--------IEEIEDLKEDILQAL  429 (430)
T ss_dssp             HHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECC--------SSCHHHHHHHHHHHH
T ss_pred             HHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec--------cCCHHHHHHHHHHhh
Confidence            544   4444443211      100   0         0123567999864        367777777777665

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.85  E-value=1.1e-19  Score=188.82  Aligned_cols=319  Identities=17%  Similarity=0.103  Sum_probs=200.1

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC---
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---  181 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~---  181 (520)
                      .+|.|.+++...+.....  + +.. | ..+...++    ++++++++|.+.     .+...+|++|+.+++.+++.   
T Consensus        56 ~~p~v~~a~~~~~~~~~~--~-~~~-~-~~~~~~~l----~~~la~~~~~~~-----v~~~~gg~~a~~~al~~~~~~~~  121 (406)
T 4adb_A           56 AHPELREALNEQASKFWH--T-GNG-Y-TNEPVLRL----AKKLIDATFADR-----VFFCNSGAEANEAALKLARKFAH  121 (406)
T ss_dssp             TCHHHHHHHHHHHTTCSC--C-CTT-S-CCHHHHHH----HHHHHHHSSCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccc--c-cCC-c-CCHHHHHH----HHHHHhhCCCCe-----EEEeCcHHHHHHHHHHHHHHHHH
Confidence            478999999887754321  1 111 2 23333443    378889998762     24456777999999988865   


Q ss_pred             ----CC-CEEEEcCCCCCccccccccccccccc---cccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC
Q 010008          182 ----PH-DRIMGLDLPHGGHLSHGFMTPKRRVS---GTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  253 (520)
Q Consensus       182 ----pG-D~Vl~~~~~~~ghls~g~~~~~~~v~---~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~  253 (520)
                          +| |+|++.++.|.+..............   +.....+...++      ..|+++|++++++ ++++|+++ |+|
T Consensus       122 ~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~-~~~~v~~~-p~n  193 (406)
T 4adb_A          122 DRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAA------YNDINSASALIDD-STCAVIVE-PIQ  193 (406)
T ss_dssp             HHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEEC------TTCHHHHHTTCST-TEEEEEEC-SEE
T ss_pred             hcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeC------CCcHHHHHHHhcC-CeEEEEEe-CCc
Confidence                66 99999999875542111000000000   000000111221      2489999999986 89999998 777


Q ss_pred             CC--C-----CCHHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEeccCccc-CCCCceEEEeeCCCc
Q 010008          254 PR--D-----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSL-RGPRGGMIFFKKDPV  322 (520)
Q Consensus       254 p~--~-----~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S~hK~l-~GprgG~I~~~~~~~  322 (520)
                      |+  .     .++++|.++|+++|++||+|++|. |+...+...  .... ..|+++  +||++ +|.|+|++++++   
T Consensus       194 p~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~d~~t--~sK~~~~G~r~G~~~~~~---  267 (406)
T 4adb_A          194 GEGGVVPASNAFLQGLRELCNRHNALLIFDEVQT-GVGRTGELYAYMHYGVTPDLLT--TAKALGGGFPVGALLATE---  267 (406)
T ss_dssp             TTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSCCEEEEECH---
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccchhHHHHhcCCCCCEEE--echhhcCCCCeEEEEEcH---
Confidence            64  2     268899999999999999999975 543332210  0011 357774  58998 566889999987   


Q ss_pred             chhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCC--CEEecC-CCCCeeEE
Q 010008          323 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG--YKLVSG-GSDNHLVL  399 (520)
Q Consensus       323 ~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G--~~v~~~-gt~~~~~~  399 (520)
                         ++.+.+.........+. +....++...+++.+..   +++.+++.++++.+.+.|.+.+  +.+... .....+++
T Consensus       268 ---~~~~~~~~~~~~~~~~~-~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~  340 (406)
T 4adb_A          268 ---ECARVMTVGTHGTTYGG-NPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIG  340 (406)
T ss_dssp             ---HHHHTCCTTSSCCSSTT-CHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEE
T ss_pred             ---HHHhhhccCCcCCCCCC-CHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEE
Confidence               77777765433333333 33444444456776543   5667888888888988887632  111110 01234556


Q ss_pred             EEecCC-CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          400 VDLRPM-GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       400 vd~~~~-g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      +.+... ..+..++.+.|.+.||.+..    +     .++.+|++.+..    .+++|++++++.|.++++..
T Consensus       341 ~~~~~~~~~~~~~~~~~l~~~gi~v~~----~-----~~~~iRi~~~~~----~~~e~i~~~~~~l~~~l~~~  400 (406)
T 4adb_A          341 CVLNADYAGQAKQISQEAAKAGVMVLI----A-----GGNVVRFAPALN----VSEEEVTTGLDRFAAACEHF  400 (406)
T ss_dssp             EEECTTTTTCHHHHHHHHHHTTEECEE----S-----STTEEEECCCTT----CCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCcHHHHHHHHHHHHHCCcEEee----c-----CCCeEEEECCCC----CCHHHHHHHHHHHHHHHHHH
Confidence            666431 12567788888888999853    2     257899976644    45899999999999988643

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.85  E-value=2.6e-19  Score=185.33  Aligned_cols=281  Identities=16%  Similarity=0.123  Sum_probs=183.7

Q ss_pred             HHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC
Q 010008          146 KRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES  225 (520)
Q Consensus       146 ~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~  225 (520)
                      +.+++++|.+ +    .|..+||++|+..++.+++++||+|++.++.|.+.+....    ......|.  +++.++.   
T Consensus        59 ~~la~~~~~~-~----~i~~~sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~----~~~~~~g~--~~~~~~~---  124 (386)
T 1cs1_A           59 RALAELEGGA-G----AVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFD----SLAKRGCY--RVLFVDQ---  124 (386)
T ss_dssp             HHHHHHHTCS-E----EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH----HHHTTTSC--EEEEECT---
T ss_pred             HHHHHHhCCC-c----EEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHH----HHHHhcCC--EEEEeCC---
Confidence            6788899987 2    4566999999999999999999999999998865321100    00122344  5555443   


Q ss_pred             CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEEEec
Q 010008          226 TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTT  302 (520)
Q Consensus       226 ~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S  302 (520)
                         .|++++++.+++ ++++|+++.++||+  ..|+++|+++|+++|+++++|++|..+...     .++. ++|++++|
T Consensus       125 ---~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~-----~~~~~~~di~~~s  195 (386)
T 1cs1_A          125 ---GDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQ-----NPLALGADLVLHS  195 (386)
T ss_dssp             ---TCHHHHHHHHHT-CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-----CGGGGTCSEEEEE
T ss_pred             ---CCHHHHHHhhcc-CCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC-----CccccCceEEEEc
Confidence               289999999987 89999999888875  789999999999999999999998765432     1223 58999999


Q ss_pred             cCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 010008          303 THKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALAS  379 (520)
Q Consensus       303 ~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~  379 (520)
                      +||++.||.   +|+++++++     ++.+.+.....+. .++.+....++...+++     .+....++..++++.+.+
T Consensus       196 ~sK~~~~~~~~~~G~~~~~~~-----~l~~~l~~~~~~~-~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~  264 (386)
T 1cs1_A          196 CTKYLNGHSDVVAGVVIAKDP-----DVVTELAWWANNI-GVTGGAFDSYLLLRGLR-----TLVPRMELAQRNAQAIVK  264 (386)
T ss_dssp             TTTTTTCSSCCCCEEEEESSH-----HHHHHHHHHHHHH-TCBCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHH
T ss_pred             CcccccCCCCceeEEEEeCcH-----HHHHHHHHHHHhc-CCCCCHHHHHHHHhccc-----HHHHHHHHHHHHHHHHHH
Confidence            999987654   399999863     4555554322211 12222222222111222     234556778888898999


Q ss_pred             HHHHCC-CEEe-cCC---------------CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCC---------CC--C
Q 010008          380 RLVELG-YKLV-SGG---------------SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSV---------PG--D  431 (520)
Q Consensus       380 ~L~~~G-~~v~-~~g---------------t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~---------Pg--~  431 (520)
                      .|.+.. +.-+ .++               ....++.+.+..   ..+.+.+.|++.||.+.....         |.  .
T Consensus       265 ~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~~~~  341 (386)
T 1cs1_A          265 YLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG---DEQTLRRFLGGLSLFTLAESLGGVESLISHAATMT  341 (386)
T ss_dssp             HHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS---CHHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTT
T ss_pred             HHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECC---CHHHHHHHHHhCCcceEcccCCCcceeeecccccc
Confidence            887742 2211 111               013455556542   256788899999998863110         10  0


Q ss_pred             -C--C-------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          432 -K--S-------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       432 -~--~-------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                       .  +       ...++.|||+.+..    .++++++.+.++|+++
T Consensus       342 ~~~~~~~~~~~~g~~~~~iRis~~~~----~~~~~i~~l~~al~~~  383 (386)
T 1cs1_A          342 HAGMAPEARAAAGISETLLRISTGIE----DGEDLIADLENGFRAA  383 (386)
T ss_dssp             TTTSCHHHHHHHTCCTTEEEEECCSS----CHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHhcCCCCCeEEEEEccC----CHHHHHHHHHHHHHHh
Confidence             0  0       01257899998753    3467777777776654

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.84  E-value=6.1e-21  Score=197.59  Aligned_cols=330  Identities=15%  Similarity=0.149  Sum_probs=195.7

Q ss_pred             ccceEecCC---C----CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC--CCCCCCceeee
Q 010008           94 KSLELIASE---N----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQ  164 (520)
Q Consensus        94 ~~i~Liase---n----~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg--~~~~~~~~~V~  164 (520)
                      +.|+|..++   +    ++++.|.+++...+.+....+|..      .....++++...+++.+..+  ++++++ +.++
T Consensus        27 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~g~~~lr~~la~~~~~~~~~~~~~~~v-~~~~   99 (396)
T 2q7w_A           27 GKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLG------IDGIPEFGRCTQELLFGKGSALINDKRA-RTAQ   99 (396)
T ss_dssp             -CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCC------TTCCHHHHHHHHHHHHCTTCHHHHTTCE-EEEE
T ss_pred             CceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCC------CCCCHHHHHHHHHHHhcCCCCccccccE-EEEe
Confidence            567887665   1    456999999987765422223421      11123444333333322111  234422 1012


Q ss_pred             cCChHHHHHHHHHhh--CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC-CCCCCCHHHHHHHhhhc
Q 010008          165 PLSGSPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILF  241 (520)
Q Consensus       165 ~~sGs~A~~~~l~al--l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-~~~~iD~d~le~~i~~~  241 (520)
                      ..+|++|+.+++.++  ++|||+|++++|.|.++..        .+...|.  +++.+++++ +++.+|++++++.+++.
T Consensus       100 ~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~~  169 (396)
T 2q7w_A          100 TPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKS--------VFNSAGL--EVREYAYYDAENHTLDFDALINSLNEA  169 (396)
T ss_dssp             ESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHH--------HHHHTTC--EEEEEECEETTTTEECHHHHHHHHTTC
T ss_pred             cccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHH--------HHHHcCC--ceEEEecccCCCCCcCHHHHHHHHHhC
Confidence            444559999888665  5799999999998765421        2233454  555665532 35789999999998753


Q ss_pred             --CCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhccccccc--cc-C-CCCC---cccEEEeccCccc
Q 010008          242 --RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAAS--VV-A-DPFK---YCDVVTTTTHKSL  307 (520)
Q Consensus       242 --~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~--~~-~-~p~~---~aDiv~~S~hK~l  307 (520)
                        ++++++++.++||+  ..   ++++|+++|+++|+++|+|++|. ++...+  .. + ..+.   ..++++.|+||++
T Consensus       170 ~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  248 (396)
T 2q7w_A          170 QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQ-GFARGLEEDAEGLRAFAAMHKELIVASSYSXNF  248 (396)
T ss_dssp             CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCT-TSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTT
T ss_pred             CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccc-cccCCccchhHHHHHHHhcCCcEEEEEeccccc
Confidence              35677888899887  44   46689999999999999999954 333221  00 0 0011   1347889999987


Q ss_pred             --CCCCceEEEe--eCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHh-----cCchhHHHHHHHHHHHHHHH
Q 010008          308 --RGPRGGMIFF--KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA-----QSPEFKVYQNKVVSNCRALA  378 (520)
Q Consensus       308 --~GprgG~I~~--~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~-----~~~~~~~~~~~i~~na~~l~  378 (520)
                        +|.|.|++++  +++. ...++.+.+....... .++++....++...+|+..     .....++..+++.++++.+.
T Consensus       249 ~~~G~riG~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~  326 (396)
T 2q7w_A          249 GLYNERVGACTLVAADSE-TVDRAFSQMKAAIRAN-YSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV  326 (396)
T ss_dssp             TCGGGCCEEEEEECSSHH-HHHHHHHHHHHHHHTT-TSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHH
T ss_pred             cccccccceEEEEcCCHH-HHHHHHHHHHHHHhhc-cCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence              4788899987  2210 0002333333211112 2232333333333344321     01233556677888899999


Q ss_pred             HHHHHCC----CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCH
Q 010008          379 SRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSE  454 (520)
Q Consensus       379 ~~L~~~G----~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~  454 (520)
                      +.|.+.|    +++..+. .+.++|+++     +.+.+.+.|+++||.+.    |         ++||++...     ++
T Consensus       327 ~~L~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~l~~~gv~v~----~---------~~Ris~~~~-----~~  382 (396)
T 2q7w_A          327 NTLQEKGANRDFSFIIKQ-NGMFSFSGL-----TKEQVLRLREEFGVYAV----A---------SGRVNVAGM-----TP  382 (396)
T ss_dssp             HHHHHTTCCSCCTHHHHC-CSSEEECCC-----CHHHHHHHHHHHCEECC----T---------TCEEEGGGC-----CT
T ss_pred             HHHHhcCCCCCcceecCC-CceEEEecC-----CHHHHHHHHHhcCeeec----C---------CceEEEeec-----CH
Confidence            9998876    6654432 234445443     35678888889999983    2         369987632     47


Q ss_pred             HHHHHHHHHHHHH
Q 010008          455 KEFVAIADFIHEG  467 (520)
Q Consensus       455 ~d~~~la~~i~~~  467 (520)
                      +|++++++.|+++
T Consensus       383 e~i~~~~~~l~~~  395 (396)
T 2q7w_A          383 DNMAPLCEAIVAV  395 (396)
T ss_dssp             TTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            8999999988765

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.84  E-value=4.3e-20  Score=195.84  Aligned_cols=327  Identities=17%  Similarity=0.176  Sum_probs=196.5

Q ss_pred             HHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCC----
Q 010008          107 RAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKP----  182 (520)
Q Consensus       107 ~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~p----  182 (520)
                      +.|.+++...+...    .   ..|+..+...+++    +++++++|.+.     .+.+++|++|+.+++.++++|    
T Consensus        53 ~~v~~a~~~~l~~~----~---~~y~~~~~~~~l~----~~la~~~~~~~-----v~~t~~gt~A~~~al~~~~~~~~~~  116 (467)
T 2oqx_A           53 GAVTQSMQAAMMRG----D---EAYSGSRSYYALA----ESVKNIFGYQY-----TIPTHQGRGAEQIYIPVLIKKREQE  116 (467)
T ss_dssp             SCCCHHHHHHTTSC----C---CCSSSCHHHHHHH----HHHHHHHCCSE-----EEEEC--CCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccC----c---ceeccCchhHHHH----HHHHHHhCcCc-----EEEcCCcHHHHHHHHHHHhcccccc
Confidence            77888887766421    1   1344445555555    67888888752     234456779999999999888    


Q ss_pred             -C----CEEEEcCCCCCccccccccccccccccccceEEEEE------cccC---CCCCCCCHHHHHHHhhh---cCCcE
Q 010008          183 -H----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMP------YRLD---ESTGLVDYDMLEKTAIL---FRPKL  245 (520)
Q Consensus       183 -G----D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~------~~~d---~~~~~iD~d~le~~i~~---~~pkl  245 (520)
                       |    |+|+.. ..|+.....       .....|.  ..+.      ++.+   +.++.+|+++|++++++   .++++
T Consensus       117 ~G~~~~d~Ii~~-~~h~~t~~~-------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~  186 (467)
T 2oqx_A          117 KGLDRSKMVAFS-NYFFDTTQG-------HSQINGC--TVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPY  186 (467)
T ss_dssp             HCCCTTTCEEEE-SSCCHHHHH-------HHHHTTC--EEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCC
T ss_pred             CCCCccceEEec-ccccccchh-------hhhccCc--ceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeE
Confidence             9    997765 344211000       0011111  1111      1111   13467899999999985   26899


Q ss_pred             EEEcCCCCCC---CC---CHHHHHHHHHHhCCEEEEechhhc-cc--------ccccccCCCC-----CcccEEEeccCc
Q 010008          246 IIAGASAYPR---DF---DYPRMRQIADAVGALLMMDMAHIS-GL--------VAASVVADPF-----KYCDVVTTTTHK  305 (520)
Q Consensus       246 Ii~~~s~~p~---~~---d~~~i~~ia~~~g~~li~D~Ah~~-gl--------i~~~~~~~p~-----~~aDiv~~S~hK  305 (520)
                      |++++++|++   ..   ++++|+++|++||++||+|++|.. +.        ...+.....+     .++|++++|+||
T Consensus       187 vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK  266 (467)
T 2oqx_A          187 IVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKK  266 (467)
T ss_dssp             EEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSS
T ss_pred             EEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEeccc
Confidence            9998877763   33   478999999999999999988866 33        1222211111     247888999999


Q ss_pred             ccCCCCceEEEeeCC-CcchhhHHHhhcccC--CCCC--CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 010008          306 SLRGPRGGMIFFKKD-PVLGVELESAINNAV--FPGL--QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASR  380 (520)
Q Consensus       306 ~l~GprgG~I~~~~~-~~~~~~l~~~i~~~~--~p~~--~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~  380 (520)
                      ++..|.||+++++++ ..   +...++....  ..+.  .++.....++++..+++....   ++..++..++++.+.+.
T Consensus       267 ~~g~~~Gg~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~---~~~~~~~~~~~~~l~~~  340 (467)
T 2oqx_A          267 DAMVPMGGLLCMKDDSFF---DVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMN---LDWLAYRIAQVQYLVDG  340 (467)
T ss_dssp             TTCCSSCEEEEECSGGGH---HHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCceEEEecChhHH---HHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhh---HHHHHHHHHHHHHHHHH
Confidence            997676889888772 00   1222222211  1111  233333444445444443322   23445567788999999


Q ss_pred             HHHCCCEEecCCCCCeeEEEEecC--CCCC-----HHHHHHHH-hhcCeEEcCCCC------C--CCCCCCCCCEEEEcc
Q 010008          381 LVELGYKLVSGGSDNHLVLVDLRP--MGID-----GARVEKIL-DMASITLNKNSV------P--GDKSALVPGGIRIGS  444 (520)
Q Consensus       381 L~~~G~~v~~~gt~~~~~~vd~~~--~g~~-----~~~~~~~L-~~~gI~v~~~~~------P--g~~~~~~~~giRig~  444 (520)
                      |.+.|+++. + ...+++++++..  .+++     +..+.+.| .+.||.+.....      |  |...+...+.||+++
T Consensus       341 L~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~  418 (467)
T 2oqx_A          341 LEEIGVVCQ-Q-AGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTI  418 (467)
T ss_dssp             HHHTTCCEE-E-ECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECC
T ss_pred             HHHCCCeee-c-CCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEe
Confidence            988888776 3 234667777742  2233     33446666 899999864210      1  000011247899987


Q ss_pred             CCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          445 PAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       445 ~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +..+   .+++|++++++.|.++++.
T Consensus       419 ~~~~---~t~e~i~~~~~~l~~~l~~  441 (467)
T 2oqx_A          419 PRAT---YTQTHMDFIIEAFKHVKEN  441 (467)
T ss_dssp             CTTT---SCHHHHHHHHHHHHHHHHS
T ss_pred             cCCC---CCHHHHHHHHHHHHHHHhh
Confidence            7430   3589999999999998864

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.84  E-value=5e-19  Score=186.82  Aligned_cols=321  Identities=15%  Similarity=0.104  Sum_probs=200.6

Q ss_pred             cceEecCCC--C---ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH
Q 010008           95 SLELIASEN--F---TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS  169 (520)
Q Consensus        95 ~i~Liasen--~---~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs  169 (520)
                      .|++..+.+  .   .+|.|.+|+...+... ..  ....|  ..+...+++    +++++++|.+.     .+..+||+
T Consensus        78 ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~-~~--~~~~~--~~~~~~~l~----~~la~~~g~~~-----v~~~~sGs  143 (439)
T 2oat_A           78 YFDFLSSYSAVNQGHCHPKIVNALKSQVDKL-TL--TSRAF--YNNVLGEYE----EYITKLFNYHK-----VLPMNTGV  143 (439)
T ss_dssp             EEESSGGGGTTTTCBTCHHHHHHHHHHHTTC-SC--CCTTS--EESSHHHHH----HHHHHHHTCSE-----EEEESSHH
T ss_pred             EEEccCCcccccCCCCCHHHHHHHHHHHHhc-Cc--ccCcc--CCHHHHHHH----HHHHHhcCCCE-----EEEeCCHH
Confidence            466655432  2   6799999998887542 11  11112  223344444    57778888532     24456788


Q ss_pred             HHHHHHHHhhC---------CCC-CEEEEcCCCCCccccccccccccccccccc----------eEEEEEcccCCCCCCC
Q 010008          170 PANFEVYTAIL---------KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI----------YFESMPYRLDESTGLV  229 (520)
Q Consensus       170 ~A~~~~l~all---------~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~----------~~~~v~~~~d~~~~~i  229 (520)
                      +|+.+++.++.         .|| |+|++.++.|.|.....       +...|.          ...++.++.      .
T Consensus       144 eA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~-------~~~~g~~~~~~~~~p~~~~v~~~~~------~  210 (439)
T 2oat_A          144 EAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSA-------ISSSTDPTSYDGFGPFMPGFDIIPY------N  210 (439)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHH-------HTTCCCHHHHTTSCSCCTTEEEECS------S
T ss_pred             HHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhH-------hhcCCChhcccCCCCCCCCeEEeCC------C
Confidence            99999888764         478 99999998764432111       111110          001223222      3


Q ss_pred             CHHHHHHHhhhcCCcEEEEcCCCCC-C-CC----CHHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEE
Q 010008          230 DYDMLEKTAILFRPKLIIAGASAYP-R-DF----DYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVT  300 (520)
Q Consensus       230 D~d~le~~i~~~~pklIi~~~s~~p-~-~~----d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~  300 (520)
                      |+++|+++++..++++|++...+++ + ..    ++++|+++|+++|++||+|++| .|+...+.. . ..+. ..|++ 
T Consensus       211 d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-~g~g~~g~~~~~~~~~~~~Di~-  288 (439)
T 2oat_A          211 DLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQ-TGLARTGRWLAVDYENVRPDIV-  288 (439)
T ss_dssp             CHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTT-TTTTTTSSSSGGGGGTCCCSEE-
T ss_pred             CHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc-cCCccCCcchhHHHhCCCCcEE-
Confidence            8999999995337788888754332 2 33    7999999999999999999998 564332211 0 1111 36877 


Q ss_pred             eccCcccCC--CCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 010008          301 TTTHKSLRG--PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA  378 (520)
Q Consensus       301 ~S~hK~l~G--prgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~  378 (520)
                       |++|++.|  .++|++++++      ++.+.+.........+++.. ..++...+++.+..+   ++.+++.++++++.
T Consensus       289 -t~sK~l~~G~~~~G~v~~~~------~~~~~l~~~~~~~t~~~~~~-~~aaa~aal~~~~~~---~~~~~~~~~~~~l~  357 (439)
T 2oat_A          289 -LLGKALSGGLYPVSAVLCDD------DIMLTIKPGEHGSTYGGNPL-GCRVAIAALEVLEEE---NLAENADKLGIILR  357 (439)
T ss_dssp             -EECGGGGTTSSCCEEEEECH------HHHTTSCTTSSCCSSTTCHH-HHHHHHHHHHHHHHT---THHHHHHHHHHHHH
T ss_pred             -EecccccCCCCCeEEEEECH------HHHhccCCCCcccCCCcCHH-HHHHHHHHHHHHhhh---hHHHHHHHHHHHHH
Confidence             66799854  5899999987      67666654322233333333 333334466655322   45677888889999


Q ss_pred             HHHHHCCCEEec--CCCCCeeEEEEecCC-CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHH
Q 010008          379 SRLVELGYKLVS--GGSDNHLVLVDLRPM-GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK  455 (520)
Q Consensus       379 ~~L~~~G~~v~~--~gt~~~~~~vd~~~~-g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~  455 (520)
                      +.|.+.+++++.  .+ ...++++++... +.+..++.+.|.+.||.+.    |+     .++.+|++.+..    .+++
T Consensus       358 ~~L~~l~~~~~~~~~~-~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~----~~-----~~~~iRi~~~~~----~t~e  423 (439)
T 2oat_A          358 NELMKLPSDVVTAVRG-KGLLNAIVIKETKDWDAWKVCLRLRDNGLLAK----PT-----HGDIIRFAPPLV----IKED  423 (439)
T ss_dssp             HHHTTSCTTTEEEEEE-ETTEEEEEECCCSSCCHHHHHHHHHHTTEECC----BS-----SSSEEEECCCTT----CCHH
T ss_pred             HHHHHhcCCCcEEEEe-eeeEEEEEEecCccHHHHHHHHHHHHCCeEEe----cC-----CCCEEEEECccC----CCHH
Confidence            999876554321  11 234566777532 1356778888888999984    32     257899986643    4689


Q ss_pred             HHHHHHHHHHHHHH
Q 010008          456 EFVAIADFIHEGVE  469 (520)
Q Consensus       456 d~~~la~~i~~~l~  469 (520)
                      |++++++.|+++++
T Consensus       424 ~i~~~l~~l~~~l~  437 (439)
T 2oat_A          424 ELRESIEIINKTIL  437 (439)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988764

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.84  E-value=9.8e-19  Score=183.52  Aligned_cols=334  Identities=14%  Similarity=0.038  Sum_probs=201.5

Q ss_pred             cceEecCC--CC---ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH
Q 010008           95 SLELIASE--NF---TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS  169 (520)
Q Consensus        95 ~i~Liase--n~---~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs  169 (520)
                      .|++.++.  ++   .+|.|++++...+.+...  ++..+| . .+...+   + +++++++++++++++   +..++|+
T Consensus        45 ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~--~~~~~~-~-~~~~~~---l-~~~la~~~~~~~~~v---~~~~ggt  113 (429)
T 1s0a_A           45 LVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSH--VMFGGI-T-HAPAIE---L-CRKLVAMTPQPLECV---FLADSGS  113 (429)
T ss_dssp             EEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSC--CCCSSE-E-CHHHHH---H-HHHHHHHSCTTCCEE---EEESSHH
T ss_pred             EEEcCccHhhccCCCCCHHHHHHHHHHHHhccc--cccccc-C-CHHHHH---H-HHHHHHhCCCCCCEE---EEeCCHH
Confidence            35555554  22   579999999988754321  111112 1 122222   2 357889998776522   3334566


Q ss_pred             HHHHHHHHhhC---C----CCCEEEEcCCCCCccccccccc------cccccccccceEEEEEcccCC---CCCCCCHHH
Q 010008          170 PANFEVYTAIL---K----PHDRIMGLDLPHGGHLSHGFMT------PKRRVSGTSIYFESMPYRLDE---STGLVDYDM  233 (520)
Q Consensus       170 ~A~~~~l~all---~----pGD~Vl~~~~~~~ghls~g~~~------~~~~v~~~g~~~~~v~~~~d~---~~~~iD~d~  233 (520)
                      +|+..++.++.   +    |||+|+++++.+.+........      ..............++++.+.   ..+.+|+++
T Consensus       114 ea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  193 (429)
T 1s0a_A          114 VAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVG  193 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHH
T ss_pred             HHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHH
Confidence            99998887653   2    7999999998764431100000      000000000012444443210   123589999


Q ss_pred             HHHHhhh--cCCcEEEEcCC-CCCC--CCC----HHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEe
Q 010008          234 LEKTAIL--FRPKLIIAGAS-AYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTT  301 (520)
Q Consensus       234 le~~i~~--~~pklIi~~~s-~~p~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~  301 (520)
                      |++++++  .++++|+++.. ++++  ..+    +++|+++|+++|++||+|++|. |+...+.. . ..+. ..|+++ 
T Consensus       194 l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~g~~g~~~~~~~~~~~~d~~t-  271 (429)
T 1s0a_A          194 FARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT-GFGRTGKLFACEHAEIAPDILC-  271 (429)
T ss_dssp             HHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEE-
T ss_pred             HHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhh-CCcccchHHHhhhcCCCCCEEE-
Confidence            9999874  25677887765 5654  455    9999999999999999999975 33221210 0 0011 467775 


Q ss_pred             ccCcccCC--CCceEEEeeCCCcchhhHHHhhcccC-----CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010008          302 TTHKSLRG--PRGGMIFFKKDPVLGVELESAINNAV-----FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNC  374 (520)
Q Consensus       302 S~hK~l~G--prgG~I~~~~~~~~~~~l~~~i~~~~-----~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na  374 (520)
                       ++|+|.|  .|.|++++++      ++.+.+....     ..+..+ .+...+++..++++.+.+.   ++.+++.+++
T Consensus       272 -~sK~l~~G~~~iG~~~~~~------~~~~~l~~~~~~~~~~~~t~~-~n~~~~~a~~aal~~~~~~---~~~~~~~~~~  340 (429)
T 1s0a_A          272 -LGKALTGGTMTLSATLTTR------EVAETISNGEAGCFMHGPTFM-GNPLACAAANASLAILESG---DWQQQVADIE  340 (429)
T ss_dssp             -ECGGGGTSSSCCEEEEECH------HHHHHHHTSTTSSCSCCCTTT-TCHHHHHHHHHHHHHHHTC---HHHHHHHHHH
T ss_pred             -ecccccCCCccceEEEeCH------HHHHHhhcCCCcccccCCCCC-CCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence             5599865  6789999987      6666665421     112222 2444555555677765543   3567777788


Q ss_pred             HHHHHHHHHC----CCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCcccc
Q 010008          375 RALASRLVEL----GYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTR  450 (520)
Q Consensus       375 ~~l~~~L~~~----G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~  450 (520)
                      +.+.+.|.+.    ++..+.+  ...++++++.. ..+...+.+.|.+.||.+..    +      .+.+||+.+..+  
T Consensus       341 ~~l~~~L~~l~~~~~~~~~~~--~g~~~~~~~~~-~~~~~~l~~~l~~~Gi~v~~----~------~~~iRis~~~~~--  405 (429)
T 1s0a_A          341 VQLREQLAPARDAEMVADVRV--LGAIGVVETTH-PVNMAALQKFFVEQGVWIRP----F------GKLIYLMPPYII--  405 (429)
T ss_dssp             HHHHHHHGGGGGCTTEEEEEE--ETTEEEEEESS-CBCHHHHHHHHHHTTEECCC----B------TTEEEECCCTTC--
T ss_pred             HHHHHHHHHHhcCCCEEEEEE--eeEEEEEEECC-cccHHHHHHHHHHCCCEEec----c------CCEEEEECCCCC--
Confidence            8999998763    3332222  23456777753 34667788888889999842    1      368999976444  


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q 010008          451 GFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       451 g~~~~d~~~la~~i~~~l~  469 (520)
                        +++|++++++.|+++++
T Consensus       406 --t~e~i~~~~~~l~~~~~  422 (429)
T 1s0a_A          406 --LPQQLQRLTAAVNRAVQ  422 (429)
T ss_dssp             --CHHHHHHHHHHHHHHTS
T ss_pred             --CHHHHHHHHHHHHHHHH
Confidence              48999999999988764

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.84  E-value=7.7e-20  Score=190.34  Aligned_cols=280  Identities=13%  Similarity=0.119  Sum_probs=177.8

Q ss_pred             HHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC
Q 010008          145 QKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE  224 (520)
Q Consensus       145 ~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~  224 (520)
                      ++++++++|.+.     .|..+||++|+.+++. +++|||+|++.++.|++.+....    ..+...|.  +++.++++ 
T Consensus        61 r~~la~~~g~~~-----~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~----~~~~~~G~--~v~~v~~~-  127 (393)
T 1n8p_A           61 ERAVAALENAQY-----GLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFT----KVANAHGV--ETSFTNDL-  127 (393)
T ss_dssp             HHHHHHHTTCSE-----EEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHH----HTSTTTCS--CCEEESSH-
T ss_pred             HHHHHHHhCCCc-----EEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHH----HHHHHcCc--EEEEeCCC-
Confidence            378889999872     4667899999999999 99999999999988765432110    01223344  44454443 


Q ss_pred             CCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHh----CCEEEEechhhcccccccccCCCCC-ccc
Q 010008          225 STGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAV----GALLMMDMAHISGLVAASVVADPFK-YCD  297 (520)
Q Consensus       225 ~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~----g~~li~D~Ah~~gli~~~~~~~p~~-~aD  297 (520)
                           | +++++++++ ++++|++..++||+  ..|+++|.++|+++    |+++++|++|..+...     .++. ++|
T Consensus       128 -----d-~~l~~~i~~-~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~-----~~~~~~~d  195 (393)
T 1n8p_A          128 -----L-NDLPQLIKE-NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS-----NPLNFGAD  195 (393)
T ss_dssp             -----H-HHHHHHSCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-----CGGGGTCS
T ss_pred             -----h-HHHHHhccc-CceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC-----CHHHcCCe
Confidence                 7 899999987 89999999888886  78999999999999    9999999998766431     2333 689


Q ss_pred             EEEeccCcccCCC--Cc-eEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010008          298 VVTTTTHKSLRGP--RG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNC  374 (520)
Q Consensus       298 iv~~S~hK~l~Gp--rg-G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na  374 (520)
                      ++++|+||++.++  |. |+++++++     ++.+.+.....+ ..+++.....+++..+++     .+....++..+|+
T Consensus       196 i~~~S~sK~~g~~G~rigG~~~~~~~-----~~~~~l~~~~~~-~g~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~  264 (393)
T 1n8p_A          196 IVVHSATKYINGHSDVVLGVLATNNK-----PLYERLQFLQNA-IGAIPSPFDAWLTHRGLK-----TLHLRVRQAALSA  264 (393)
T ss_dssp             EEEEETTTTTTCSSCCCCEEEEESCH-----HHHHHHHHHHHH-HCCCCCHHHHHHHHHHHT-----THHHHHHHHHHHH
T ss_pred             EEEEECcccccCCCCceeEEEEeCCH-----HHHHHHHHHHHh-cCCCCCHHHHHHHHhccc-----hHHHHHHHHHHHH
Confidence            9999999998643  34 99998642     565555432111 011112111111111222     2455667778889


Q ss_pred             HHHHHHHHHCC--CE-EecCC--------------C--C-CeeEEEEecCCCCCHHHHHHHHh---hcCeEEcCCC----
Q 010008          375 RALASRLVELG--YK-LVSGG--------------S--D-NHLVLVDLRPMGIDGARVEKILD---MASITLNKNS----  427 (520)
Q Consensus       375 ~~l~~~L~~~G--~~-v~~~g--------------t--~-~~~~~vd~~~~g~~~~~~~~~L~---~~gI~v~~~~----  427 (520)
                      +.+.+.|.+.+  +. +..++              .  . .+++.+.+..   +......+++   ..+|.++.+.    
T Consensus       265 ~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~---~~~~~~~~l~~l~~~~~~~s~G~~~s~  341 (393)
T 1n8p_A          265 NKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKG---GAEAASKFASSTRLFTLAESLGGIESL  341 (393)
T ss_dssp             HHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESS---CHHHHHHHHHHCSSSEECSCCCCSSCE
T ss_pred             HHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCC---cHHHHHHHHhhCCcceECCCCCCCcce
Confidence            99999987753  32 21221              0  1 3455666642   2234444444   3455554331    


Q ss_pred             --CCCCCC------------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          428 --VPGDKS------------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       428 --~Pg~~~------------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                        .|+..+            ....+.||+|+...++    +++++.+.++++++
T Consensus       342 ~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~----~~~i~~l~~al~~~  391 (393)
T 1n8p_A          342 LEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDT----DDLLEDIKQALKQA  391 (393)
T ss_dssp             EECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCH----HHHHHHHHHHHHHH
T ss_pred             eeccccccccccCHHHHHhcCCCCCeEEEEEccCCH----HHHHHHHHHHHHHh
Confidence              232211            1124789999876554    77788888777654

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.84  E-value=2.4e-19  Score=185.98  Aligned_cols=307  Identities=15%  Similarity=0.130  Sum_probs=196.3

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC---
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---  181 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~---  181 (520)
                      .++.|.+++...+.+ +..  .+ +.| ..+..++++    +++++++|.+.     .+..++|++|+.+++.++..   
T Consensus        57 ~~~~v~~a~~~~~~~-~~~--~~-~~~-~~~~~~~l~----~~la~~~g~~~-----v~~~~gg~~a~~~al~~~~~~~~  122 (397)
T 2ord_A           57 SHPRLVEAIKDQAEK-LIH--CS-NLF-WNRPQMELA----ELLSKNTFGGK-----VFFANTGTEANEAAIKIARKYGK  122 (397)
T ss_dssp             TCHHHHHHHHHHHHH-CSC--CC-TTS-EEHHHHHHH----HHHHHTTTSCE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHh-ccc--Cc-ccc-CCHHHHHHH----HHHHHhcCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence            579999999888754 222  11 122 233344444    67888888432     24456777999999888753   


Q ss_pred             ---C-CCEEEEcCCCCCccccccccccccccccccce-----E-----EEEEcccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 010008          182 ---P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----F-----ESMPYRLDESTGLVDYDMLEKTAILFRPKLII  247 (520)
Q Consensus       182 ---p-GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~-----~-----~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi  247 (520)
                         | +|+|+++++.+.+....       .+...|..     +     .++.++.      .|+++|++++++ ++++|+
T Consensus       123 ~~~~~~~~vi~~~~~yh~~~~~-------~~~~~g~~~~~~~~~p~~~~~~~~~~------~d~~~l~~~l~~-~~~~v~  188 (397)
T 2ord_A          123 KKSEKKYRILSAHNSFHGRTLG-------SLTATGQPKYQKPFEPLVPGFEYFEF------NNVEDLRRKMSE-DVCAVF  188 (397)
T ss_dssp             HHCTTCCEEEEEBTCCCCSSHH-------HHHHSBCHHHHGGGCSCCTTEEEECT------TCHHHHHHHCCT-TEEEEE
T ss_pred             cCCCCCceEEEEcCCcCCCchh-------hhhccCChhhccccCCCCCCeeEecC------CCHHHHHHHhhc-CeEEEE
Confidence               6 47899888876443211       11122211     0     0223222      389999999987 899999


Q ss_pred             EcCCCCCC-C-----CCHHHHHHHHHHhCCEEEEechhhcccccccccCCCC---C-cccEEEeccCcccC-CCCceEEE
Q 010008          248 AGASAYPR-D-----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YCDVVTTTTHKSLR-GPRGGMIF  316 (520)
Q Consensus       248 ~~~s~~p~-~-----~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~---~-~aDiv~~S~hK~l~-GprgG~I~  316 (520)
                      ++.++||+ .     .++++|+++|+++|++||+|++|. |+...+.. .++   . ..|++  |++|++. |.|.|+++
T Consensus       189 ~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~-~~~~~~~~~~d~~--s~sK~~~~G~r~G~~~  264 (397)
T 2ord_A          189 LEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQC-GMGRTGKL-FAYQKYGVVPDVL--TTAKGLGGGVPIGAVI  264 (397)
T ss_dssp             ECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSS-SHHHHHTCCCSEE--EECGGGGTTSCCEEEE
T ss_pred             EecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccCccc-hhhhhhCCCCCee--eeccccCCCcCeEEEE
Confidence            99888875 3     378999999999999999999985 65433321 111   1 36877  5579985 56789999


Q ss_pred             eeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCEEec--CC
Q 010008          317 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVS--GG  392 (520)
Q Consensus       317 ~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~v~~--~g  392 (520)
                      +++      ++. .+.........+. +....++...+|+....   ++..+++.++++.+.+.|++.  +++++.  .+
T Consensus       265 ~~~------~~~-~l~~~~~~~~~~~-~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~  333 (397)
T 2ord_A          265 VNE------RAN-VLEPGDHGTTFGG-NPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRG  333 (397)
T ss_dssp             ECS------TTC-CCCTTSSCCSSTT-CHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             Ech------Hhc-ccCCCCcCCCCCC-CHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEE
Confidence            988      444 4432211112222 33444455556776543   345677788888888888764  343211  11


Q ss_pred             CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          393 SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       393 t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                       ...++++++.. ..+..++.+.|.+.||.+.    |+     .++.+|++.+..    .+++|++++++.|.++++
T Consensus       334 -~g~~~~~~~~~-~~~~~~l~~~l~~~gi~v~----~~-----~~~~iRis~~~~----~~~e~i~~~~~~l~~~l~  395 (397)
T 2ord_A          334 -MGLMIGIQFRE-EVSNREVATKCFENKLLVV----PA-----GNNTIRFLPPLT----VEYGEIDLAVETLKKVLQ  395 (397)
T ss_dssp             -ETTEEEEEECT-TSCHHHHHHHHHHTTEECE----EE-----TTTEEEECCCTT----CCHHHHHHHHHHHHHHHH
T ss_pred             -EeEEEEEEECC-hHHHHHHHHHHHHCCCEEc----cC-----CCCEEEEECCcC----CCHHHHHHHHHHHHHHHh
Confidence             23456677753 3356778888888999984    33     256899997643    458999999999988764

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.84  E-value=7.3e-20  Score=194.52  Aligned_cols=322  Identities=17%  Similarity=0.147  Sum_probs=195.8

Q ss_pred             ccceEecC-C--CCChHHHHHHHhhhhh---ccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCC
Q 010008           94 KSLELIAS-E--NFTSRAVMEAVGSCLT---NKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS  167 (520)
Q Consensus        94 ~~i~Lias-e--n~~~~~V~ea~~s~l~---~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~s  167 (520)
                      +.|.|..+ +  ..+++.|.+++.....   .....+|.  +  .|.+..+.+    ++++++++|.+.     .+.+++
T Consensus        90 ~~i~l~~g~~~~~~~~~~i~~a~~~~~~~~~~~~~~~Y~--~--~g~~~~~~l----~~~la~~~g~~~-----~i~~~s  156 (464)
T 1ibj_A           90 LLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYT--R--SGNPTRDAL----ESLLAKLDKADR-----AFCFTS  156 (464)
T ss_dssp             HHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSCCCSCSBT--T--TCCHHHHHH----HHHHHHHHTCSE-----EEEESS
T ss_pred             eEEECCCCCCCCCCCCccHHhhhhhhhhcccccCCcccc--C--CCCHHHHHH----HHHHHHHhCCCe-----EEEECC
Confidence            45666543 3  3467777777653211   11011221  1  244444444    478899999862     355688


Q ss_pred             hHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 010008          168 GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII  247 (520)
Q Consensus       168 Gs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi  247 (520)
                      |++|+.+++. +++|||+|+++++.|+++....    ...+...|.  +++.++++      |++++++++++ ++|+|+
T Consensus       157 Gt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~----~~~~~~~G~--~v~~v~~~------d~~~l~~~i~~-~tk~v~  222 (464)
T 1ibj_A          157 GMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLL----SQVVPRSGV--VVKRVNTT------KLDEVAAAIGP-QTKLVW  222 (464)
T ss_dssp             HHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHH----HHTSGGGTC--EEEEECTT------SHHHHHHHCCS-SEEEEE
T ss_pred             HHHHHHHHHH-HhCCCCEEEEECCCchhHHHHH----HHHHHHcCC--EEEEeCCC------CHHHHHHHhcc-CceEEE
Confidence            9999887764 8899999999999886542100    001223454  55665542      89999999987 899999


Q ss_pred             EcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEEEeccCcccCCC---CceEEEeeCCC
Q 010008          248 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDP  321 (520)
Q Consensus       248 ~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S~hK~l~Gp---rgG~I~~~~~~  321 (520)
                      +++++||+  ..|+++|+++|+++|+++++|++|+.|...     .++. ++|++++|+||++.||   ++|+++++++ 
T Consensus       223 l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~-----~~~~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~-  296 (464)
T 1ibj_A          223 LESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-  296 (464)
T ss_dssp             ECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTC-----CGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSH-
T ss_pred             EeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccC-----ChhhcCCEEEEECCcccccCCCCCcEEEEEEChH-
Confidence            99998886  789999999999999999999998766431     2232 5899999999999765   6699999863 


Q ss_pred             cchhhHHHhhcccCC-CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCC---------------
Q 010008          322 VLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG---------------  385 (520)
Q Consensus       322 ~~~~~l~~~i~~~~~-p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G---------------  385 (520)
                          ++.+.+..... .+ .+.....+.+++ .+++     ......++...++..+.+.|++.+               
T Consensus       297 ----~l~~~l~~~~~~~g-~~~~~~~~~a~~-~al~-----~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~  365 (464)
T 1ibj_A          297 ----KLAKEVYFLQNSEG-SGLAPFDCWLCL-RGIK-----TMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPG  365 (464)
T ss_dssp             ----HHHHHHHHHHHHTT-CBCCHHHHHHHH-HHHT-----THHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTT
T ss_pred             ----HHHHHHHHHHHhcC-CCCCHHHHHHHH-hchh-----hHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcc
Confidence                56555543221 11 111122222222 2332     122334445566666777776532               


Q ss_pred             CEEecCCC--CCeeEEEEecCCCCC-HHHHHHHHhhcCeEEcCCC------CCCCC----------C--CCCCCEEEEcc
Q 010008          386 YKLVSGGS--DNHLVLVDLRPMGID-GARVEKILDMASITLNKNS------VPGDK----------S--ALVPGGIRIGS  444 (520)
Q Consensus       386 ~~v~~~gt--~~~~~~vd~~~~g~~-~~~~~~~L~~~gI~v~~~~------~Pg~~----------~--~~~~~giRig~  444 (520)
                      +.+..+..  ...++++++.  +.. ...+.+.|...||.++.+.      .|+..          .  ...++.||++.
T Consensus       366 ~~~~~~~~~g~g~~~~~~l~--~~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsv  443 (464)
T 1ibj_A          366 HHLHFSQAKGAGSVFSFITG--SVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISA  443 (464)
T ss_dssp             HHHHTTTCSCCCSEEEEECS--CHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEEC
T ss_pred             hHHHhccCCCCceEEEEEEC--CHHHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEe
Confidence            22222111  1346677763  211 1235556666888876543      12100          0  11256799986


Q ss_pred             CCccccCCCHHHHHHHHHHHHHHHH
Q 010008          445 PAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       445 ~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ..        +|++++.+.|++++.
T Consensus       444 g~--------edi~~li~~L~~al~  460 (464)
T 1ibj_A          444 GI--------EDVDDLISDLDIAFK  460 (464)
T ss_dssp             CS--------SCHHHHHHHHHHHHH
T ss_pred             CC--------CCHHHHHHHHHHHHh
Confidence            52        788999988888775

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.83  E-value=1.2e-18  Score=183.55  Aligned_cols=312  Identities=13%  Similarity=0.085  Sum_probs=190.5

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC----
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  180 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all----  180 (520)
                      .+|.|.+|+...+.+. .  +.... | ..+...+++    +++++++|.+.     .+..+||++|+.+++.++.    
T Consensus        82 ~~p~v~~ai~~~~~~~-~--~~~~~-~-~~~~~~~l~----~~la~~~g~~~-----v~~~~sGseA~~~al~~a~~~~~  147 (433)
T 1z7d_A           82 CHPNILNAMINQAKNL-T--ICSRA-F-FSVPLGICE----RYLTNLLGYDK-----VLMMNTGAEANETAYKLCRKWGY  147 (433)
T ss_dssp             TCHHHHHHHHHHHTTC-S--CCCTT-S-EEHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhC-C--CccCC-c-CCHHHHHHH----HHHHhhcCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence            6799999998887542 1  11111 2 223333333    67788888542     2445678899999888753    


Q ss_pred             -----CCC-CEEEEcCCCCCccccccccccccccccccce----------EEEEEcccCCCCCCCCHHHHHHHhhhcCCc
Q 010008          181 -----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY----------FESMPYRLDESTGLVDYDMLEKTAILFRPK  244 (520)
Q Consensus       181 -----~pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~----------~~~v~~~~d~~~~~iD~d~le~~i~~~~pk  244 (520)
                           +|| |+|+++++.|.|.....       +...|..          ..++.++      ..|+++|+++++..+++
T Consensus       148 ~~~g~~~gr~~vi~~~~~yhg~~~~~-------~~~~g~~~~~~~~~p~~~~v~~~~------~~d~~~le~~l~~~~~~  214 (433)
T 1z7d_A          148 EVKKIPENMAKIVVCKNNFSGRTLGC-------ISASTTKKCTSNFGPFAPQFSKVP------YDDLEALEEELKDPNVC  214 (433)
T ss_dssp             HTSCCCTTCCEEEEETTC---------------------------------CEEEEC------TTCHHHHHHHHTSTTEE
T ss_pred             hccCCCCCCCeEEEEeCCcCCcchhh-------hcccCCccccccCCCCCCCeEEeC------CCCHHHHHHHhCCCCEE
Confidence                 578 99999998765432111       1122210          0122222      13899999999423788


Q ss_pred             EEEEcCCCCC-C-CC----CHHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEeccCcccC-C-CCce
Q 010008          245 LIIAGASAYP-R-DF----DYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR-G-PRGG  313 (520)
Q Consensus       245 lIi~~~s~~p-~-~~----d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S~hK~l~-G-prgG  313 (520)
                      +|++...+++ + ..    ++++|+++|+++|++||+|++|. |+...+.. . ..+. ..|++  |++|++. | .|+|
T Consensus       215 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G~~~~G  291 (433)
T 1z7d_A          215 AFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-GLGRTGKLLCVHHYNVKPDVI--LLGKALSGGHYPIS  291 (433)
T ss_dssp             EEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCCE
T ss_pred             EEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCcc-CCCcCCcchhhHhcCCCCCEE--EECccccCCCCCeE
Confidence            8888754332 2 23    79999999999999999999984 64332211 0 1111 36877  5679985 4 5899


Q ss_pred             EEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCEEec-
Q 010008          314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVS-  390 (520)
Q Consensus       314 ~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~v~~-  390 (520)
                      ++++++      ++.+.+......+..+++ ....++...+|+.+...   ++.+++.++++++.+.|.+.  +++++. 
T Consensus       292 ~v~~~~------~~~~~l~~~~~~~t~~~~-~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~  361 (433)
T 1z7d_A          292 AVLAND------DIMLVIKPGEHGSTYGGN-PLAASICVEALNVLINE---KLCENAEKLGGPFLENLKRELKDSKIVRD  361 (433)
T ss_dssp             EEEECH------HHHTTCCTTCCCCTTTTC-HHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred             EEEECH------HHHhhhccccccccCCCC-HHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence            999987      676666543222223333 33343434466655322   35677778888888888763  553221 


Q ss_pred             -CCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          391 -GGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       391 -~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                       .+ ...++++++.....+...+.+.|.+.||.+.    |+     ..+.+|++.+..    .+++|++++++.|+++++
T Consensus       362 ~~~-~g~~~~i~~~~~~~~~~~~~~~l~~~Gv~v~----~~-----~~~~iRi~~~~~----~t~e~i~~~l~~l~~~l~  427 (433)
T 1z7d_A          362 VRG-KGLLCAIEFKNELVNVLDICLKLKENGLITR----DV-----HDKTIRLTPPLC----ITKEQLDECTEIIVKTVK  427 (433)
T ss_dssp             EEE-ETTEEEEEECTTTCCHHHHHHHHHHTTEECC----EE-----TTTEEEECCCTT----CCHHHHHHHHHHHHHHHH
T ss_pred             EEe-eeeEEEEEEccChhHHHHHHHHHHHCCeEEe----cC-----CCCEEEEECCcC----CCHHHHHHHHHHHHHHHH
Confidence             11 2345677775321356778888888999984    32     256899986643    458999999999998875


Q ss_pred             H
Q 010008          470 I  470 (520)
Q Consensus       470 ~  470 (520)
                      .
T Consensus       428 ~  428 (433)
T 1z7d_A          428 F  428 (433)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.83  E-value=3.1e-19  Score=187.23  Aligned_cols=311  Identities=15%  Similarity=0.126  Sum_probs=195.4

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC---
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---  181 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~---  181 (520)
                      .+|.|.+++...+.. +..  ....|  ..+...++    ++++++++|.+.     .+..+||++|+.+++.++..   
T Consensus        74 ~~p~v~~ai~~~~~~-~~~--~~~~~--~~~~~~~l----~~~la~~~g~~~-----v~~~~ggteA~~~al~~~~~~~~  139 (420)
T 2pb2_A           74 CHPALVEALKSQGET-LWH--TSNVF--TNEPALRL----GRKLIDATFAER-----VLFMNSGTEANETAFKLARHYAC  139 (420)
T ss_dssp             TCHHHHHHHHHHHTT-CCC--CCTTS--CCHHHHHH----HHHHHHHSSCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHh-ccc--ccCcc--CCHHHHHH----HHHHHhhCCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence            579999999888753 222  11122  22333333    367888888532     23456777999999988765   


Q ss_pred             ----CC-CEEEEcCCCCCccccccccccccccccccce-----E-----EEEEcccCCCCCCCCHHHHHHHhhhcCCcEE
Q 010008          182 ----PH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----F-----ESMPYRLDESTGLVDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       182 ----pG-D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~-----~-----~~v~~~~d~~~~~iD~d~le~~i~~~~pklI  246 (520)
                          || |+|+++++.|.+.....       +...|..     +     .+..++.      .|+++|++++++ ++++|
T Consensus       140 ~~~~~g~~~vi~~~~~yh~~~~~~-------~~~~g~~~~~~~~~p~~~~~~~~~~------~d~~~le~~i~~-~~~~v  205 (420)
T 2pb2_A          140 VRHSPFKTKIIAFHNAFHGRSLFT-------VSVGGQPKYSDGFGPKPADIIHVPF------NDLHAVKAVMDD-HTCAV  205 (420)
T ss_dssp             HHTCTTCCEEEEETTCCCCSSHHH-------HHHSSCHHHHTTSSSCCSCEEEECT------TCHHHHHHHCCT-TEEEE
T ss_pred             hccCCCCCEEEEEeCCcCCcCHHH-------HHhcCCccccccCCCCCCCeEEecC------CCHHHHHHHhcc-CceEE
Confidence                78 49999998775432110       1111210     0     1222221      389999999987 89999


Q ss_pred             EEcCCCCCC-C-----CCHHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEeccCcccC-CCCceEEE
Q 010008          247 IAGASAYPR-D-----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGMIF  316 (520)
Q Consensus       247 i~~~s~~p~-~-----~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S~hK~l~-GprgG~I~  316 (520)
                      +++.+++++ .     .++++|+++|+++|++||+|++| .|+...+...  ..+. ..|++  |++|++. |.|.|+++
T Consensus       206 i~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~-~g~~~~g~~~~~~~~~~~~dii--t~sK~l~~G~~iG~~~  282 (420)
T 2pb2_A          206 VVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQ-CGMGRTGDLFAYMHYGVTPDIL--TSAKALGGGFPVSAML  282 (420)
T ss_dssp             EECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTT-TTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCCEEEE
T ss_pred             EEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCC-cCcccCCcHHHHHhcCCCCCeE--EecccccCCCceEEEE
Confidence            998665543 2     36889999999999999999998 5654333210  0011 36887  4679984 56789999


Q ss_pred             eeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--CCEEec--CC
Q 010008          317 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--GYKLVS--GG  392 (520)
Q Consensus       317 ~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G~~v~~--~g  392 (520)
                      +++      ++.+.+.........++ +....++...+|+.+..   +++.+++.++++++.+.|.+.  +++.+.  .+
T Consensus       283 ~~~------~l~~~l~~~~~~~t~~~-~~~~~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~  352 (420)
T 2pb2_A          283 TTQ------EIASAFHVGSHGSTYGG-NPLACAVAGAAFDIINT---PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRG  352 (420)
T ss_dssp             ECH------HHHTTCC----CCEECC-CHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred             EhH------HHHHhhcCCCcCcccCc-CHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence            987      66666554222222233 33344444446776543   456777888888888888763  332211  11


Q ss_pred             CCCeeEEEEecCC-CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          393 SDNHLVLVDLRPM-GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       393 t~~~~~~vd~~~~-g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                       ...++++++... +.+..++.+.|.+.||.+..    +     .++.+||+.+..    .+++|++++++.|+++++.
T Consensus       353 -~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~----~-----~~~~iRl~~~~~----~t~eei~~~~~~l~~~l~~  417 (420)
T 2pb2_A          353 -MGLLIGAELKPKYKGRARDFLYAGAEAGVMVLN----A-----GADVMRFAPSLV----VEEADIHEGMQRFAQAVGK  417 (420)
T ss_dssp             -ETTEEEEEECGGGTTCHHHHHHHHHHTTEECEE----S-----STTEEEECCCTT----CCHHHHHHHHHHHHHHHHH
T ss_pred             -cceEEEEEECCCchHHHHHHHHHHHHCCCEEEe----C-----CCCEEEEECCCC----CCHHHHHHHHHHHHHHHHH
Confidence             234566776431 12467788888889999853    2     156899987643    4589999999999988753

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.83  E-value=7.6e-19  Score=183.71  Aligned_cols=321  Identities=15%  Similarity=0.039  Sum_probs=195.1

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCC-CCCceeeecC-ChHHHHHHHHH---h
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQPL-SGSPANFEVYT---A  178 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~-~~~~~~V~~~-sGs~A~~~~l~---a  178 (520)
                      +.++.|++++...+.+. .  .....|+ ..+...++    ++.++++++.+. +    +|.++ +|++|+.+++.   +
T Consensus        57 ~~~~~v~~a~~~~~~~~-~--~~~~~~~-~~~~~~~l----~~~la~~~~~~~~~----~v~~~~g~~~a~~~~~~~a~~  124 (426)
T 1sff_A           57 HLHPKVVAAVEAQLKKL-S--HTCFQVL-AYEPYLEL----CEIMNQKVPGDFAK----KTLLVTTGSEAVENAVKIARA  124 (426)
T ss_dssp             BTCHHHHHHHHHHTTTC-S--CCCTTTE-ECHHHHHH----HHHHHHHSSCSSCE----EEEEESSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhC-C--Ccccccc-CCHHHHHH----HHHHHHhCCccccc----EEEEeCchHHHHHHHHHHHHH
Confidence            36799999998877532 1  1111222 23333333    367888883232 3    33444 45599999887   6


Q ss_pred             hCCCCCEEEEcCCCCCccccccccccccccccccc-------------eEEEEEcccCC--CCCCCCHHHHHHHhhh---
Q 010008          179 ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-------------YFESMPYRLDE--STGLVDYDMLEKTAIL---  240 (520)
Q Consensus       179 ll~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~-------------~~~~v~~~~d~--~~~~iD~d~le~~i~~---  240 (520)
                      +.++| +|++.++.|.+.....       +...|.             .+..++++.+.  .++.+|+++|+++++.   
T Consensus       125 ~~~~~-~vi~~~p~y~~~~~~~-------~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~  196 (426)
T 1sff_A          125 ATKRS-GTIAFSGAYHGRTHYT-------LALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAA  196 (426)
T ss_dssp             HHTCC-EEEEETTCCCCSSHHH-------HHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCC
T ss_pred             hhCCC-eEEEECCCcCCCchHh-------hhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccC
Confidence            77887 8888888775432111       111111             12333332210  1235799999998873   


Q ss_pred             -cCCcEEEEcC-CCCCC-CCC----HHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEeccCcccC-C
Q 010008          241 -FRPKLIIAGA-SAYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-G  309 (520)
Q Consensus       241 -~~pklIi~~~-s~~p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S~hK~l~-G  309 (520)
                       .++++|++.. ++|.+ ..+    +++|.++|+++|++||+|++|. |+...+...  .... ..|++  |++|++. |
T Consensus       197 ~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~di~--s~sK~~~~G  273 (426)
T 1sff_A          197 PEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQS-GAGRTGTLFAMEQMGVAPDLT--TFAKSIAGG  273 (426)
T ss_dssp             GGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTSCCSEE--EECGGGGTS
T ss_pred             CCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-ccCcccchhhhhhcCCCCCEE--EEcccccCC
Confidence             3678888853 34445 667    9999999999999999999976 654333110  0111 35666  6679984 5


Q ss_pred             CCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCC--CE
Q 010008          310 PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG--YK  387 (520)
Q Consensus       310 prgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G--~~  387 (520)
                      .|.|++++++      ++.+.+.........+. +....+++..+|+.+...   ++.+++.++++.+.+.|.+.+  ++
T Consensus       274 lriG~~~~~~------~~~~~l~~~~~~~~~~~-~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~  343 (426)
T 1sff_A          274 FPLAGVTGRA------EVMDAVAPGGLGGTYAG-NPIACVAALEVLKVFEQE---NLLQKANDLGQKLKDGLLAIAEKHP  343 (426)
T ss_dssp             SCCEEEEEEH------HHHTTSCTTSBCCSSSS-CHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             CceEEEEEcH------HHHhhhccCCcCcCCCC-CHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            6679999988      67666654222222233 334444555567655432   345677777888888886632  22


Q ss_pred             ---EecCCCCCeeEEEEecC-------CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHH
Q 010008          388 ---LVSGGSDNHLVLVDLRP-------MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEF  457 (520)
Q Consensus       388 ---v~~~gt~~~~~~vd~~~-------~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~  457 (520)
                         .+.+  ...++++++..       .+.+..++.+.|.+.||.+.    ||..   .++++||+.+..    .+++|+
T Consensus       344 ~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~----~~~~---~~~~iRi~~~~~----~~~~~i  410 (426)
T 1sff_A          344 EIGDVRG--LGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILL----SCGP---YYNVLRILVPLT----IEDAQI  410 (426)
T ss_dssp             TEEEEEE--ETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECE----EEST---TSCEEEECCCTT----CCHHHH
T ss_pred             CeEEEEE--EEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEe----cCCC---CCCEEEEECCcc----CCHHHH
Confidence               2222  24567777742       12234567777878899985    3321   257899987633    358999


Q ss_pred             HHHHHHHHHHHHH
Q 010008          458 VAIADFIHEGVEI  470 (520)
Q Consensus       458 ~~la~~i~~~l~~  470 (520)
                      +++++.|.++++.
T Consensus       411 ~~~~~~l~~~l~~  423 (426)
T 1sff_A          411 RQGLEIISQCFDE  423 (426)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988753

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.83  E-value=2.7e-20  Score=192.68  Aligned_cols=319  Identities=16%  Similarity=0.176  Sum_probs=194.7

Q ss_pred             ccceEecCC----C---CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHc-CC--CCCCCceee
Q 010008           94 KSLELIASE----N---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF-NL--DENKWGVNV  163 (520)
Q Consensus        94 ~~i~Liase----n---~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lf-g~--~~~~~~~~V  163 (520)
                      +.|+|..++    +   ++++.|.+++...+.+....+|+..   .|   ..+++    +.+++++ +.  +++    +|
T Consensus        27 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~---~g---~~~lr----~~la~~~~~~~~~~~----~v   92 (394)
T 2ay1_A           27 GKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGL---SG---EPEFQ----KAMGELILGDGLKSE----TT   92 (394)
T ss_dssp             TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCS---SC---CHHHH----HHHHHHHHGGGCCGG----GE
T ss_pred             cccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCC---CC---cHHHH----HHHHHHHhCCCCCcc----cE
Confidence            467887765    2   3579999999887654222344321   11   23444    3344443 44  444    33


Q ss_pred             e---cCChHHHHHHHHHhhC--CCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC-CCCCCCHHHHHHH
Q 010008          164 Q---PLSGSPANFEVYTAIL--KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKT  237 (520)
Q Consensus       164 ~---~~sGs~A~~~~l~all--~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-~~~~iD~d~le~~  237 (520)
                      .   +.+|++|+.+++.++.  .|||+|++++|.|.++..        .+...|.  +++.+++++ +++.+|+++++++
T Consensus        93 ~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~  162 (394)
T 2ay1_A           93 ATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVS--------IMNFMGL--PVQTYRYFDAETRGVDFEGMKAD  162 (394)
T ss_dssp             EEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHH--------HHHHHTC--CEEEEECEETTTTEECHHHHHHH
T ss_pred             EEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHH--------HHHHcCC--ceEEEecccccCCccCHHHHHHH
Confidence            3   4455599998887764  499999999988765421        2233454  455555532 3578999999999


Q ss_pred             hhhc--CCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhccccccc---ccC-CCCC--cc-cEEEecc
Q 010008          238 AILF--RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAAS---VVA-DPFK--YC-DVVTTTT  303 (520)
Q Consensus       238 i~~~--~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~---~~~-~p~~--~a-Div~~S~  303 (520)
                      +++.  ++++++++.++||+  ..+   +++|.++|+++|+++|+|++|.. +...+   ..+ ..+.  +. .+++.|+
T Consensus       163 l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~  241 (394)
T 2ay1_A          163 LAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQG-FGDGLEEDAAGTRLIASRIPEVLIAASC  241 (394)
T ss_dssp             HHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTT-SSSCHHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred             HHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccc-cccCcccchHHHHHHhhcCCCEEEEEec
Confidence            8763  25667778888886  444   66889999999999999999653 32211   000 0011  22 3678899


Q ss_pred             Cccc--CCCCceEEEe--eCCCcchhhH----HHhhcccCCCCCCCCChHHHHHHHHHHHHHh-----cCchhHHHHHHH
Q 010008          304 HKSL--RGPRGGMIFF--KKDPVLGVEL----ESAINNAVFPGLQGGPHNHTIGGLAVCLKHA-----QSPEFKVYQNKV  370 (520)
Q Consensus       304 hK~l--~GprgG~I~~--~~~~~~~~~l----~~~i~~~~~p~~~g~p~~~~iaala~al~~~-----~~~~~~~~~~~i  370 (520)
                      ||++  +|.|.|++++  +++     ++    .+.+.........+.+.. ..++...+|+..     .....++..+++
T Consensus       242 sK~~~~~G~riG~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~-~~~a~~~~l~~~~l~~~~~~~~~~~~~~~  315 (394)
T 2ay1_A          242 SKNFGIYRERTGCLLALCADA-----ATRELAQGAMAFLNRQTYSFPPFH-GAKIVSTVLTTPELRADWMAELEAVRSGM  315 (394)
T ss_dssp             TTTTTCGGGCEEEEEEECSSH-----HHHHHHHHHHHHHHHTTTSSCCCH-HHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcCcCCccceEEEEeCCH-----HHHHHHHHHHHHHHhhhcCCCChH-HHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence            9987  4777899998  221     33    222221111122222233 333333344421     012346677888


Q ss_pred             HHHHHHHHHHHHHCC----CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCC
Q 010008          371 VSNCRALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPA  446 (520)
Q Consensus       371 ~~na~~l~~~L~~~G----~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~  446 (520)
                      .++++.+.+.|.+.|    +++..+. ...++|+++     +.+.+.+.|+++||.+.    |         ++||++..
T Consensus       316 ~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~~~~~~-----~~~~~~~~l~~~gi~v~----~---------~~Ris~~~  376 (394)
T 2ay1_A          316 LRLREQLAGELRDLSGSDRFGFVAEH-RGMFSRLGA-----TPEQVKRIKEEFGIYMV----G---------DSRINIAG  376 (394)
T ss_dssp             HHHHHHHHHHHHHHHTSSTTTHHHHC-CSSEEECCC-----CHHHHHHHHHHHCEECC----T---------TCEEEGGG
T ss_pred             HHHHHHHHHHHHhcCCCCCeeEEcCC-ceEEEeeCC-----CHHHHHHHHHhCCEEec----C---------CCeEEeec
Confidence            888899999998753    6654432 234455443     34678888889999983    2         36998652


Q ss_pred             ccccCCCHHHHHHHHHHHHHH
Q 010008          447 MTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       447 ~tt~g~~~~d~~~la~~i~~~  467 (520)
                           .+++|++++++.|+++
T Consensus       377 -----~~~~~i~~~~~~l~~~  392 (394)
T 2ay1_A          377 -----LNDNTIPILARAIIEV  392 (394)
T ss_dssp             -----CCTTTHHHHHHHHHHH
T ss_pred             -----CCHhhHHHHHHHHHHc
Confidence                 3479999999988764

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.83  E-value=1.3e-18  Score=180.56  Aligned_cols=249  Identities=16%  Similarity=0.120  Sum_probs=166.3

Q ss_pred             chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccc
Q 010008          134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  213 (520)
Q Consensus       134 ~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~  213 (520)
                      ++..+++|    +++++++|.+.     .+..+||++|+..++.+++++||+|+++++.|++......    ......|.
T Consensus        58 ~~~~~~l~----~~la~~~g~~~-----~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~----~~~~~~g~  124 (389)
T 3acz_A           58 NPTVEQFE----EMVCSIEGAAG-----SAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFT----HWLPRFGI  124 (389)
T ss_dssp             CHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHH----HHHHHTTC
T ss_pred             ChHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHH----HHHHHcCC
Confidence            45555555    67888999872     4567899999999999999999999999998876432110    00123454


Q ss_pred             eEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCC
Q 010008          214 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD  291 (520)
Q Consensus       214 ~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~  291 (520)
                        +++.++.      .|++++++++++ ++++|++..++||+  ..|+++|+++|+++|+++++|++|..+...     .
T Consensus       125 --~~~~v~~------~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~-----~  190 (389)
T 3acz_A          125 --EVDLIDT------SDVEKVKAAWKP-NTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFL-----K  190 (389)
T ss_dssp             --EEEEECT------TCHHHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTC-----C
T ss_pred             --EEEEECC------CCHHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccc-----C
Confidence              5555443      489999999987 89999999888876  789999999999999999999998765421     2


Q ss_pred             CCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCC-CCCCCCChHHHHHHHHHHHHHhcCchhHHH
Q 010008          292 PFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  366 (520)
Q Consensus       292 p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~-p~~~g~p~~~~iaala~al~~~~~~~~~~~  366 (520)
                      |+. ++|+++.|+||++.||.   +|+++++++     ++.+++..... .+...+ .....+    ++..+.  .+...
T Consensus       191 ~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~-----~~~~~l~~~~~~~g~~~~-~~~~~~----~~~~l~--~l~~r  258 (389)
T 3acz_A          191 PLELGADIALHSVSKYINGHGDVIGGVSSAKTA-----EDIATIKFYRKDAGSLMA-PMDAFL----CARGMK--TLPIR  258 (389)
T ss_dssp             GGGTTCSEEEEETTTTTTCSSCCCCEEEEESSH-----HHHHHHHHHHHHHCCCCC-HHHHHH----HHHHHT--THHHH
T ss_pred             ccccCCeEEEECChhhccCCCCceeEEEEECcH-----HHHHHHHHHHHhcCCCCC-HHHHHH----HHcCcc--HHHHH
Confidence            333 68999999999997664   499999872     34444443221 111111 121211    222221  23455


Q ss_pred             HHHHHHHHHHHHHHHHHCC-CE-EecCC---------------CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcC
Q 010008          367 QNKVVSNCRALASRLVELG-YK-LVSGG---------------SDNHLVLVDLRPMGIDGARVEKILDMASITLNK  425 (520)
Q Consensus       367 ~~~i~~na~~l~~~L~~~G-~~-v~~~g---------------t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~  425 (520)
                      .++..+|++.+.+.|.+.+ +. +..++               ....++.+.+.  +  .+.+.+.|++.||.+..
T Consensus       259 ~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~--~--~~~~~~~l~~~~i~~~~  330 (389)
T 3acz_A          259 MQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMK--S--FEAAKKLMEHLKVCTLA  330 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES--S--HHHHHHHHTTCSSSEEB
T ss_pred             HHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEEC--C--HHHHHHHHHhCCCcEEC
Confidence            6777888999999998743 21 11111               01334555553  2  56788899999987754

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.82  E-value=9.1e-19  Score=183.45  Aligned_cols=326  Identities=15%  Similarity=0.084  Sum_probs=192.1

Q ss_pred             cceEecCC--CCC----hHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC-CCCCceeeecCC
Q 010008           95 SLELIASE--NFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLS  167 (520)
Q Consensus        95 ~i~Liase--n~~----~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~-~~~~~~~V~~~s  167 (520)
                      .|++.++.  +++    +|.|++|+...+.... . +...+|.  .+...+    .++++++++|++ ++    +|.+++
T Consensus        44 ~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~-~-~~~~~~~--~~~~~~----l~~~la~~~~~~~~~----~v~~~~  111 (419)
T 2eo5_A           44 YLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLA-H-AAANDFY--NIPQLE----LAKKLVTYSPGNFQK----KVFFSN  111 (419)
T ss_dssp             EEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSC-C-CSCSCSC--CHHHHH----HHHHHHHHSSCSSCE----EEEEES
T ss_pred             EEEccCChhhhccCCCCCHHHHHHHHHHHhhCc-c-ccccccC--CHHHHH----HHHHHHHhCCCCcCC----EEEEeC
Confidence            46665554  333    7999999988875431 1 1111221  222222    236788999987 54    344444


Q ss_pred             -hHHHHHHHHHhhCC-CCCEEEEcCCCCCcccccccc------ccccccccccceEEEEEcccCCCCCC-----------
Q 010008          168 -GSPANFEVYTAILK-PHDRIMGLDLPHGGHLSHGFM------TPKRRVSGTSIYFESMPYRLDESTGL-----------  228 (520)
Q Consensus       168 -Gs~A~~~~l~all~-pGD~Vl~~~~~~~ghls~g~~------~~~~~v~~~g~~~~~v~~~~d~~~~~-----------  228 (520)
                       |++|+..++.++.. +||+|++++|.+.+.......      .++........  .++.++++ +.+.           
T Consensus       112 gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~-~~~~~~~g~~~~~~~  188 (419)
T 2eo5_A          112 SGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMP--GVIHVPYP-NPYRNPWHINGYENP  188 (419)
T ss_dssp             SHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCT--TEEEECCC-CSSSCTTCCCTTTCH
T ss_pred             chHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCC--CCEEECCC-ccccccccccccccc
Confidence             56999998887643 499999999877543210000      00000000011  22333333 2221           


Q ss_pred             -----CCHHHHH-HHhhh----cCCcEEEEcCCCCC-C-CCC----HHHHHHHHHHhCCEEEEechhhccccccccc-CC
Q 010008          229 -----VDYDMLE-KTAIL----FRPKLIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-AD  291 (520)
Q Consensus       229 -----iD~d~le-~~i~~----~~pklIi~~~s~~p-~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~~  291 (520)
                           +|+++|+ +++++    .++++|+++..+++ + ..+    +++|+++|+++|++||+|++|. |+...+.. ..
T Consensus       189 ~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~-~~g~~g~~~~~  267 (419)
T 2eo5_A          189 SELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQM-GLGRTGKLFAI  267 (419)
T ss_dssp             HHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGG
T ss_pred             hhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCccCcchhhH
Confidence                 4788999 88874    25678887755544 3 455    9999999999999999999975 43322211 00


Q ss_pred             C-CC-cccEEEeccCcccC-C-CCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHH
Q 010008          292 P-FK-YCDVVTTTTHKSLR-G-PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ  367 (520)
Q Consensus       292 p-~~-~aDiv~~S~hK~l~-G-prgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~  367 (520)
                      . +. ..|++  |++|++. | +|.|++++++      ++. .+ .....+..++ +...+++...+++...     +..
T Consensus       268 ~~~~~~~d~~--t~sK~~~~G~~riG~~~~~~------~~~-~~-~~~~~~t~~~-n~~~~~aa~aal~~~~-----~~~  331 (419)
T 2eo5_A          268 ENFNTVPDVI--TLAKALGGGIMPIGATIFRK------DLD-FK-PGMHSNTFGG-NALACAIGSKVIDIVK-----DLL  331 (419)
T ss_dssp             GGGTCCCSEE--EECGGGGTTTSCCEEEEEEG------GGC-CC-------CCCC-CHHHHHHHHHHHHHHH-----HHH
T ss_pred             HhcCCCCCEE--EecccccCCccceEEEEEch------Hhh-cC-CcccCCCCCC-CHHHHHHHHHHHHHHH-----HHH
Confidence            1 11 35766  5669985 5 7779999988      454 44 2112222222 3344445445666532     267


Q ss_pred             HHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCc
Q 010008          368 NKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAM  447 (520)
Q Consensus       368 ~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~  447 (520)
                      +++.++++.|.+.|.+. +..+.+  ...++++++.+...... +.+.|.+.||.+..    +     ..+.+||+.+..
T Consensus       332 ~~~~~~~~~l~~~L~~~-~~~~~~--~g~~~~i~~~~~~~~~~-~~~~l~~~Gv~v~~----~-----~~~~lRis~~~~  398 (419)
T 2eo5_A          332 PHVNEIGKIFAEELQGL-ADDVRG--IGLAWGLEYNEKKVRDR-IIGESFKRGLLLLP----A-----GRSAIRVIPPLV  398 (419)
T ss_dssp             HHHHHHHHHHHHHHTTS-SSEEEE--ETTEEEEECSCHHHHHH-HHHHHHHTTEECEE----E-----TTTEEEECCCTT
T ss_pred             HHHHHHHHHHHHHHHHh-hhheEe--eeEEEEEEEecCccHHH-HHHHHHHCCCEEec----C-----CCCEEEEECCCC
Confidence            78888899999999765 322222  23455677632111234 67777789999853    2     146899976644


Q ss_pred             cccCCCHHHHHHHHHHHHHHHH
Q 010008          448 TTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       448 tt~g~~~~d~~~la~~i~~~l~  469 (520)
                          .+++|++++++.|+++++
T Consensus       399 ----~t~e~i~~~l~~l~~~l~  416 (419)
T 2eo5_A          399 ----ISEEEAKQGLDILKKVIK  416 (419)
T ss_dssp             ----CCHHHHHHHHHHHHHHHH
T ss_pred             ----CCHHHHHHHHHHHHHHHH
Confidence                358999999999998875

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.82  E-value=4.9e-18  Score=175.99  Aligned_cols=323  Identities=14%  Similarity=0.113  Sum_probs=192.2

Q ss_pred             cceEecC--CCC---ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH
Q 010008           95 SLELIAS--ENF---TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS  169 (520)
Q Consensus        95 ~i~Lias--en~---~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs  169 (520)
                      .|++..+  .++   .+|.|.+++...+.+. ..++.  +|  ..+...++    ++++++++|.+.     .+..++|+
T Consensus        38 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~--~~--~~~~~~~l----~~~la~~~~~~~-----v~~~~gg~  103 (395)
T 3nx3_A           38 YLDFSSGIGVCALGYNHAKFNAKIKAQVDKL-LHTSN--LY--YNENIAAA----AKNLAKASALER-----VFFTNSGT  103 (395)
T ss_dssp             EEESSHHHHTCTTCBSCHHHHHHHHHHHTTC-SCCCT--TS--BCHHHHHH----HHHHHHHHTCSE-----EEEESSHH
T ss_pred             EEECCCcHHhccCCCCCHHHHHHHHHHHHhc-ccccc--cc--CCHHHHHH----HHHHHHhcCCCe-----EEEeCCHH
Confidence            4555543  332   4799999998877532 22221  12  23333333    367888888431     24456777


Q ss_pred             HHHHHHHHhhC-------CCCCEEEEcCCCCCcccccccccc-----ccccccccceEEEEEcccCCCCCCCCHHHHHHH
Q 010008          170 PANFEVYTAIL-------KPHDRIMGLDLPHGGHLSHGFMTP-----KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKT  237 (520)
Q Consensus       170 ~A~~~~l~all-------~pGD~Vl~~~~~~~ghls~g~~~~-----~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~  237 (520)
                      +|+..++.++.       .+||+|++.++.|.|.........     .......+.  +...++      ..|+++|+++
T Consensus       104 ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~d~~~l~~~  175 (395)
T 3nx3_A          104 ESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLIS--GVKFAK------YNDISSVEKL  175 (395)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCS--CEEEEC------TTCHHHHHTT
T ss_pred             HHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCC--CcEEeC------CCCHHHHHHh
Confidence            99999888764       468999999988754321110000     000000011  122222      1389999999


Q ss_pred             hhhcCCcEEEEcCCCC-CC-CCC----HHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEeccCccc-
Q 010008          238 AILFRPKLIIAGASAY-PR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSL-  307 (520)
Q Consensus       238 i~~~~pklIi~~~s~~-p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S~hK~l-  307 (520)
                      +++ ++++|++..+++ ++ ..+    +++|+++|+++|++||+|++|. |+...+.. . .... ..|+++  ++|++ 
T Consensus       176 l~~-~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~-~~g~~g~~~~~~~~~~~~d~~t--~sK~~~  251 (395)
T 3nx3_A          176 VNE-KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQC-GMGRSGKFFAYEHAQILPDIMT--SAKALG  251 (395)
T ss_dssp             CCT-TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEE--ECGGGT
T ss_pred             ccC-CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCCcCCcchhHHhcCCCCCEEE--eccccc
Confidence            976 788888875443 33 334    8999999999999999999964 33222210 0 0111 356665  45987 


Q ss_pred             CCCCceEEEeeCCCcchhhH-HHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH---
Q 010008          308 RGPRGGMIFFKKDPVLGVEL-ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE---  383 (520)
Q Consensus       308 ~GprgG~I~~~~~~~~~~~l-~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~---  383 (520)
                      .|+|.|++++++      ++ .+.+......+.++++.....++ ..+++....+   ++.+++.++.+.+.+.|.+   
T Consensus       252 ~G~~~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~aa-~aal~~~~~~---~~~~~~~~~~~~~~~~l~~~~~  321 (395)
T 3nx3_A          252 CGLSVGAFVINQ------KVASNSLEAGDHGSTYGGNPLVCAGV-NAVFEIFKEE---KILENVNKLTPYLEQSLDELIN  321 (395)
T ss_dssp             TTSCCEEEEECH------HHHHHHSCTTCCSSCBSCCHHHHHHH-HHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEch------hhhhhhcCCcccCCCCCCCHHHHHHH-HHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHH
Confidence            467889999988      66 66665543333333333333333 3466654322   3345555556666666544   


Q ss_pred             -CC-CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHH
Q 010008          384 -LG-YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA  461 (520)
Q Consensus       384 -~G-~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la  461 (520)
                       .. +..+.+  ...++++++.. ..+...+.+.|.+.||.+..    +     .++.+||+.+..+    +++|++++.
T Consensus       322 ~~~~~~~~~~--~g~~~~~~~~~-~~~~~~~~~~l~~~Gi~v~~----~-----~~~~iRi~~~~~~----t~e~i~~~l  385 (395)
T 3nx3_A          322 EFDFCKKRKG--LGFMQGLSLDK-SVKVAKVIQKCQENALLLIS----C-----GENDLRFLPPLIL----QKEHIDEMS  385 (395)
T ss_dssp             HCTTEEEEEE--ETTEEEEEECT-TSCHHHHHHHHHHTTEECEE----E-----TTTEEEECCCTTC----CHHHHHHHH
T ss_pred             hCCCeEEEEe--EEEEEEEEeCC-cchHHHHHHHHHHCCCEEec----C-----CCCEEEEECCCCC----CHHHHHHHH
Confidence             22 322222  23456777653 23567788888899999853    2     2578999866543    489999999


Q ss_pred             HHHHHHHH
Q 010008          462 DFIHEGVE  469 (520)
Q Consensus       462 ~~i~~~l~  469 (520)
                      +.|+++++
T Consensus       386 ~~l~~~l~  393 (395)
T 3nx3_A          386 EKLRKALK  393 (395)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998875

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.81  E-value=6.4e-18  Score=177.34  Aligned_cols=326  Identities=12%  Similarity=0.044  Sum_probs=180.0

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC----
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  180 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all----  180 (520)
                      .+|.|.+++...+.+. ..+++. +|  ..+...    ..+++++++++.+.+++   +..++|++|+..++.+++    
T Consensus        46 ~~p~v~~a~~~~~~~~-~~~~~~-~~--~~~~~~----~l~~~la~~~~~~~~~v---~~~~gg~ea~~~al~~~~~~~~  114 (430)
T 3i4j_A           46 GRAEVGERMAAQAARL-PFVHGS-QF--SSDVLE----EYAGRLARFVGLPTFRF---WAVSGGSEATESAVKLARQYHV  114 (430)
T ss_dssp             CCHHHHHHHHHHHHHC-CCCCTT-TC--EEHHHH----HHHHHHHHHTTCTTCEE---EEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhc-cccccc-cc--CCHHHH----HHHHHHHHhCCCCCCEE---EEeCcHHHHHHHHHHHHHHHHH
Confidence            4889999988877542 211111 11  122222    33468889998876522   334556799999998876    


Q ss_pred             ----CCCCEEEEcCCCCCccccccccccccccccccce-----E-------EEEEcccCCCC---CCCCHHHHHHHhhh-
Q 010008          181 ----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----F-------ESMPYRLDEST---GLVDYDMLEKTAIL-  240 (520)
Q Consensus       181 ----~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~-----~-------~~v~~~~d~~~---~~iD~d~le~~i~~-  240 (520)
                          .++|+|++.++.|.|.....       ....+..     +       ....++.+ +.   +..|+++|+++++. 
T Consensus       115 ~~g~~~~~~vi~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~le~~l~~~  186 (430)
T 3i4j_A          115 ERGEPGRFKVITRVPSYHGASLGS-------LAASGMGARRELYTPLMRPEAWPKLPKP-DPARNGAEDAEGLRALLERE  186 (430)
T ss_dssp             HTTCTTCCEEEEETTC--------------------------------CGGGSCEECCC-CTTSCHHHHHTHHHHHHHHH
T ss_pred             hcCCCCCcEEEEEeCCcCCCCccc-------ccccCccccccccCCcCCCCCceEcCCC-cccchhhHHHHHHHHHHHhc
Confidence                45789999998764432111       1111110     0       00011111 11   22466899998874 


Q ss_pred             --cCCcEEEEcCCCC-CC--CCC----HHHHHHHHHHhCCEEEEechhhcccccccccC--CCC-C-cccEEEeccCccc
Q 010008          241 --FRPKLIIAGASAY-PR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPF-K-YCDVVTTTTHKSL  307 (520)
Q Consensus       241 --~~pklIi~~~s~~-p~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~-~-~aDiv~~S~hK~l  307 (520)
                        .++++|+++.+++ ++  ..+    +++|+++|+++|++||+|++|. |+...+...  ..+ . ..|+++  ++|++
T Consensus       187 ~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-~~~~~g~~~~~~~~~~~~~di~t--~sK~l  263 (430)
T 3i4j_A          187 GPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMS-GMGRCGSPLALSRWSGVTPDIAV--LGKGL  263 (430)
T ss_dssp             CGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTTCCCSEEE--ECGGG
T ss_pred             CCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcccchhhhhhhcCCCCcEEE--Ecccc
Confidence              3556777765444 32  344    8999999999999999999964 443222110  001 1 246665  55998


Q ss_pred             C-C-CCceEEEeeCCCcchhhHHHhhccc----CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 010008          308 R-G-PRGGMIFFKKDPVLGVELESAINNA----VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRL  381 (520)
Q Consensus       308 ~-G-prgG~I~~~~~~~~~~~l~~~i~~~----~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L  381 (520)
                      . | +|.|++++++      ++.+.+...    ......+++...+ ++..++|+....+   ++.+++.++.+.+.+.|
T Consensus       264 ~~G~~r~G~~~~~~------~i~~~~~~~~~~~~~~~t~~~~~~~~-aaa~aal~~~~~~---~~~~~~~~~~~~~~~~l  333 (430)
T 3i4j_A          264 AAGYAPLAGLLAAP------QVYETVMGGSGAFMHGFTYAGHPVSV-AAGLSVLDIVERE---DLTGAAKERGAQLLAGL  333 (430)
T ss_dssp             TTTSSCCEEEEECH------HHHHHHHHTTCBCCCCCTTTTCHHHH-HHHHHHHHHHHHT---THHHHHHHHHHHHHHHH
T ss_pred             cCCccccEEEEECH------HHHHHHhccCCcccccCCCCCCHHHH-HHHHHHHHHHHcc---cHHHHHHHHHHHHHHHH
Confidence            4 5 7889999987      677766542    1222223333333 3333466654322   34555566666666666


Q ss_pred             HH-----CCCEEecCCCCCeeEEEEecCC--------CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCcc
Q 010008          382 VE-----LGYKLVSGGSDNHLVLVDLRPM--------GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMT  448 (520)
Q Consensus       382 ~~-----~G~~v~~~gt~~~~~~vd~~~~--------g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~t  448 (520)
                      .+     .++..+.+  ...++++++...        .....++.+.|.+.||.+.....+  ......+.+||+.+...
T Consensus       334 ~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~~~~~~iRi~~~~~~  409 (430)
T 3i4j_A          334 QALQARFPQMMQVRG--TGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGA--EPNGRGDHLLLGPPLSI  409 (430)
T ss_dssp             HHHHHHCTTEEEEEE--ETTEEEEEEC------------CHHHHHHHHHHTTEECC-------------CEEEECCCTTC
T ss_pred             HHHHHhCCCeEEEEE--EEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccc--cCCCCCCEEEEECCCCC
Confidence            54     23443332  123556665321        111256778888999998542111  11123567999876443


Q ss_pred             ccCCCHHHHHHHHHHHHHHHHH
Q 010008          449 TRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       449 t~g~~~~d~~~la~~i~~~l~~  470 (520)
                          +++|++++++.|+++++.
T Consensus       410 ----t~e~i~~~l~~l~~~l~~  427 (430)
T 3i4j_A          410 ----TAAEVDGLLALLAGALED  427 (430)
T ss_dssp             ----CHHHHHHHHHHHHHHHHH
T ss_pred             ----CHHHHHHHHHHHHHHHHH
Confidence                489999999999998763

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.80  E-value=2.3e-18  Score=179.70  Aligned_cols=215  Identities=19%  Similarity=0.150  Sum_probs=148.0

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccc-cccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRR-VSGT  211 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~-v~~~  211 (520)
                      +++..+++|    +++++++|.+.     .+.++||++|+.+ +.++++|||+|++.++.|++.+....    .. ....
T Consensus        65 ~~p~~~~l~----~~la~l~g~~~-----~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~----~~~~~~~  130 (400)
T 3nmy_A           65 HNPTRFAYE----RCVAALEGGTR-----AFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFE----RVRRRTA  130 (400)
T ss_dssp             CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHH----HTHHHHH
T ss_pred             CCHHHHHHH----HHHHHHhCCCC-----EEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHH----HhhHhhc
Confidence            456667776    67888999863     4567899999987 67889999999999998875432110    00 1112


Q ss_pred             cceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhccccccccc
Q 010008          212 SIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV  289 (520)
Q Consensus       212 g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~  289 (520)
                      |.  +++.++.+      |++++++++++ ++++|++..++||+  ..|+++|+++|+++|+++|+|++|..+...    
T Consensus       131 g~--~~~~v~~~------d~~~l~~~i~~-~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~----  197 (400)
T 3nmy_A          131 GL--DFSFVDLT------DPAAFKAAIRA-DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQ----  197 (400)
T ss_dssp             CC--EEEEECTT------SHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHC----
T ss_pred             Ce--EEEEECCC------CHHHHHHHhcc-CCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccC----
Confidence            43  55555432      89999999987 89999999888886  779999999999999999999998755432    


Q ss_pred             CCCCC-cccEEEeccCcccCCC---Cce-EEEeeCCCcchhhHHHhhcccCC-CCCCCCChHHHHHHHHHHHHHhcCchh
Q 010008          290 ADPFK-YCDVVTTTTHKSLRGP---RGG-MIFFKKDPVLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEF  363 (520)
Q Consensus       290 ~~p~~-~aDiv~~S~hK~l~Gp---rgG-~I~~~~~~~~~~~l~~~i~~~~~-p~~~g~p~~~~iaala~al~~~~~~~~  363 (520)
                       .|+. ++|+++.|+||++.|+   .+| +++++++     ++.+++..... .+...+  .  .++ +.+++.+  ..+
T Consensus       198 -~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~-----~~~~~l~~~~~~~g~~~~--~--~~a-~~~l~~l--~~l  264 (400)
T 3nmy_A          198 -RPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNA-----ELAEQMAFLQNSIGGVQG--P--FDS-FLALRGL--KTL  264 (400)
T ss_dssp             -CGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCH-----HHHHHHHHHHHHHCCBCC--H--HHH-HHHHHHH--TTH
T ss_pred             -ChhhcCCcEEEecCccccCCCCCcceeEEEEeCCH-----HHHHHHHHHHHhcCCCCC--H--HHH-HHHHHhH--hHH
Confidence             2333 6899999999999876   467 6666553     55555543211 111111  1  111 1223332  234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHC-CCE
Q 010008          364 KVYQNKVVSNCRALASRLVEL-GYK  387 (520)
Q Consensus       364 ~~~~~~i~~na~~l~~~L~~~-G~~  387 (520)
                      ....++..+|++.+.+.|++. .+.
T Consensus       265 ~~r~~~~~~~a~~l~~~L~~~p~v~  289 (400)
T 3nmy_A          265 PLRMRAHCENALALAQWLETHPAIE  289 (400)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCTTEE
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCEe
Confidence            566788899999999999873 443

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.80  E-value=1.8e-18  Score=181.61  Aligned_cols=157  Identities=20%  Similarity=0.170  Sum_probs=118.2

Q ss_pred             chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccc
Q 010008          134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  213 (520)
Q Consensus       134 ~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~  213 (520)
                      ++..+++|    +++++++|.+.     .|.++||++|+..++.+++++||+|++.++.|++......    ......|.
T Consensus        57 ~~~~~~l~----~~la~~~g~~~-----~v~~~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~----~~~~~~g~  123 (421)
T 2ctz_A           57 NPTVDVLE----KRLAALEGGKA-----ALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFK----VTLKRLGI  123 (421)
T ss_dssp             CHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHH----THHHHTTC
T ss_pred             ChHHHHHH----HHHHHHhCCCc-----eEEecCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHH----HHHHHcCC
Confidence            34455555    67889999873     3567899999999999999999999999998866532110    00122344


Q ss_pred             eEEEEEc-ccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechh-hccccccccc
Q 010008          214 YFESMPY-RLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAH-ISGLVAASVV  289 (520)
Q Consensus       214 ~~~~v~~-~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah-~~gli~~~~~  289 (520)
                        +++.+ +.+      |++++++++++ ++++|++..++||+  ..|+++|+++|+++|+++++|++| ..|..     
T Consensus       124 --~~~~~~~~~------d~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~-----  189 (421)
T 2ctz_A          124 --EVRFTSREE------RPEEFLALTDE-KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYL-----  189 (421)
T ss_dssp             --EEEECCTTC------CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTS-----
T ss_pred             --EEEEECCCC------CHHHHHHhhcc-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccc-----
Confidence              66665 432      89999999987 89999999888875  789999999999999999999999 76632     


Q ss_pred             CCCCC-cccEEEeccCcccCCCC--ceEEEe
Q 010008          290 ADPFK-YCDVVTTTTHKSLRGPR--GGMIFF  317 (520)
Q Consensus       290 ~~p~~-~aDiv~~S~hK~l~Gpr--gG~I~~  317 (520)
                      ..++. ++|++++|+||++.||.  .|++++
T Consensus       190 ~~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~  220 (421)
T 2ctz_A          190 LRPLAWGAALVTHSLTKWVGGHGAVIAGAIV  220 (421)
T ss_dssp             CCGGGGTCSEEEEETTTTTTCSSCCCCEEEE
T ss_pred             CCccccCCeEEEECCcccccCCCCcEEEEEE
Confidence            12333 68999999999997754  244444

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.79  E-value=1.1e-17  Score=175.97  Aligned_cols=330  Identities=15%  Similarity=0.097  Sum_probs=192.5

Q ss_pred             cceEecCCC-----CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCC-CCCceeeecCCh
Q 010008           95 SLELIASEN-----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQPLSG  168 (520)
Q Consensus        95 ~i~Liasen-----~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~-~~~~~~V~~~sG  168 (520)
                      .|++..+..     ..+|.|.+++...+... . .|...  .+..+...    ..+++++++++... ++   .+..++|
T Consensus        45 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~-~~~~~--~~~~~~~~----~l~~~la~~~~~~~~~~---v~~~~gg  113 (439)
T 3dxv_A           45 LIDLSGAWGAASLGYGHPAIVAAVSAAAANP-A-GATIL--SASNAPAV----TLAERLLASFPGEGTHK---IWFGHSG  113 (439)
T ss_dssp             EEESSTTTTTCTTCBSCHHHHHHHHHHHHSC-S-CSCSS--SSEEHHHH----HHHHHHHHTTTCTTTEE---EEEESSH
T ss_pred             EEECCCchhhccCCCCCHHHHHHHHHHHHhc-c-Ccccc--ccCCHHHH----HHHHHHHHhCCCCCCCE---EEEeCCH
Confidence            466655443     25899999998877543 1 12111  11223223    34478888886554 32   2445677


Q ss_pred             HHHHHHHHHhh--CCCCCEEEEcCCCCCccccccccccccccccccce---E---------EEEEcccCCCCCCC-----
Q 010008          169 SPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY---F---------ESMPYRLDESTGLV-----  229 (520)
Q Consensus       169 s~A~~~~l~al--l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~---~---------~~v~~~~d~~~~~i-----  229 (520)
                      ++|+..++.++  ..++++|++.++.+.|.....       ....+..   +         .+..++.+ ..+..     
T Consensus       114 sea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  185 (439)
T 3dxv_A          114 SDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGS-------MAFSGHSVQADAAKADGLILLPYPDPYR-PYRNDPTGDA  185 (439)
T ss_dssp             HHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHH-------HCC-------------CEEEECCCCSSS-CBTTBTTSHH
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHH-------HhhcCCCchhhccccCCCCCCcEEcCCC-cccccccHHH
Confidence            79999998875  346788888887664332111       1111110   0         01122221 11112     


Q ss_pred             CHHHHHHHhh---hcCCcEEEEcCCCCC-C-CCC----HHHHHHHHHHhCCEEEEechhhcccccccc-cC-CCCC-ccc
Q 010008          230 DYDMLEKTAI---LFRPKLIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASV-VA-DPFK-YCD  297 (520)
Q Consensus       230 D~d~le~~i~---~~~pklIi~~~s~~p-~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~~-~p~~-~aD  297 (520)
                      |+++|+++++   ..++++|++..++++ + ..+    +++|+++|++||++||+|++|. |+...+. .. ..+. ..|
T Consensus       186 d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~-g~g~~g~~~~~~~~~~~~d  264 (439)
T 3dxv_A          186 ILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKV-GLARSGRLHCFEHEGFVPD  264 (439)
T ss_dssp             HHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-CTTTTSSSSGGGGTTCCCS
T ss_pred             HHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCchhhHHHhcCCCCC
Confidence            7899999984   336788888765443 3 555    9999999999999999999975 5432221 11 0011 357


Q ss_pred             EEEeccCccc-CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q 010008          298 VVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA  376 (520)
Q Consensus       298 iv~~S~hK~l-~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~  376 (520)
                      ++  |++|++ .|+|.|++++++      ++.+.+......... ++.. .+++...+++....   +++.+++.++.+.
T Consensus       265 i~--s~sK~~~~G~riG~~~~~~------~~~~~~~~~~~~~t~-~~~~-~~~aa~aal~~~~~---~~~~~~~~~~~~~  331 (439)
T 3dxv_A          265 IL--VLGKGLGGGLPLSAVIAPA------EILDCASAFAMQTLH-GNPI-SAAAGLAVLETIDR---DDLPAMAERKGRL  331 (439)
T ss_dssp             EE--EECGGGGTTSCCEEEEEEH------HHHTSCSSSSCCTTT-TCHH-HHHHHHHHHHHHHH---TTHHHHHHHHHHH
T ss_pred             EE--EEcchhcCCcceEEEEECH------HHHhhhcCCCcCCCc-ccHH-HHHHHHHHHHHHHh---cCHHHHHHHHHHH
Confidence            76  667988 467889999988      677766654333333 3333 33333345665432   2345666666777


Q ss_pred             HHHHHHHC----C-CEEecCCCCCeeEEEEec-------CCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEcc
Q 010008          377 LASRLVEL----G-YKLVSGGSDNHLVLVDLR-------PMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS  444 (520)
Q Consensus       377 l~~~L~~~----G-~~v~~~gt~~~~~~vd~~-------~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~  444 (520)
                      +.+.|.+.    + +..+.+  ...++++++.       +.+.+...+.+.|.+.||.+..    +.   ..++.+||+.
T Consensus       332 ~~~~l~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~----~~---~~~~~iRi~~  402 (439)
T 3dxv_A          332 LRDGLSELAKRHPLIGDIRG--RGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYY----VG---MNGNVLEFTP  402 (439)
T ss_dssp             HHHHHHHHHHHCTTEEEEEE--ETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEE----ES---TTSCEEEECC
T ss_pred             HHHHHHHHHHhCCCeEEEEE--EEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEee----cC---CCCCEEEEEC
Confidence            77776552    2 222222  2345555552       1112245567777778999843    32   1247899986


Q ss_pred             CCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          445 PAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       445 ~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +..    .+++|++++.+.|+++++.
T Consensus       403 ~~~----~t~e~i~~~l~~l~~~l~~  424 (439)
T 3dxv_A          403 PLT----ITETDIHKALDLLDRAFSE  424 (439)
T ss_dssp             CTT----CCHHHHHHHHHHHHHHHHT
T ss_pred             CCC----CCHHHHHHHHHHHHHHHHH
Confidence            644    3589999999999998864

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.79  E-value=2.1e-17  Score=173.51  Aligned_cols=326  Identities=14%  Similarity=0.081  Sum_probs=189.2

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC--CC
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--KP  182 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all--~p  182 (520)
                      .+|.|.+++...+.+. ..  ....|.  .+...++    +++++++++.+.+++   +..++|++|+..++.++.  ..
T Consensus        60 ~~p~v~~a~~~~~~~~-~~--~~~~~~--~~~~~~l----~~~la~~~~~~~~~v---~~~~gg~ea~~~a~~~~~~~~~  127 (433)
T 1zod_A           60 CHPEIVSVIGEYAGKL-DH--LFSEML--SRPVVDL----ATRLANITPPGLDRA---LLLSTGAESNEAAIRMAKLVTG  127 (433)
T ss_dssp             TCHHHHHHHHHHHHHC-CC--CCTTCC--CHHHHHH----HHHHHHHSCTTCCEE---EEESCHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHhC-cc--cccccC--CHHHHHH----HHHHHHhCCCCcCEE---EEeCchHHHHHHHHHHHHHhhC
Confidence            4799999998877542 11  111121  1222233    357888998876521   334567799999887653  23


Q ss_pred             CCEEEEcCCCCCcccccccc----ccccc--cccccceEEEEEcccCCC---------CCCCCHHHHHHHhhh---cCCc
Q 010008          183 HDRIMGLDLPHGGHLSHGFM----TPKRR--VSGTSIYFESMPYRLDES---------TGLVDYDMLEKTAIL---FRPK  244 (520)
Q Consensus       183 GD~Vl~~~~~~~ghls~g~~----~~~~~--v~~~g~~~~~v~~~~d~~---------~~~iD~d~le~~i~~---~~pk  244 (520)
                      +|+|++.++.|.|.......    .....  ....|  +..++++....         .+.+|+++|++++++   .+++
T Consensus       128 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~  205 (433)
T 1zod_A          128 KYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVG--SFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLA  205 (433)
T ss_dssp             CCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTT--EEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEE
T ss_pred             CCeEEEECCCcCCCChhHHhhcCCccccccCCCCCC--ceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeE
Confidence            58999999876443210000    00000  00112  24444332100         012479999999874   3667


Q ss_pred             EEEEcCCCCC-C-CCC----HHHHHHHHHHhCCEEEEechhhcccccccccCCCC---C-cccEEEeccCccc-CCCCce
Q 010008          245 LIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YCDVVTTTTHKSL-RGPRGG  313 (520)
Q Consensus       245 lIi~~~s~~p-~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~---~-~aDiv~~S~hK~l-~GprgG  313 (520)
                      +|+++..+++ + ..+    +++|+++|+++|++||+|++|. |+...+.. ..+   . ..|++  |++|++ .|.|.|
T Consensus       206 ~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-~~g~~g~~-~~~~~~~~~~di~--s~sK~~~~G~~ig  281 (433)
T 1zod_A          206 AFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQT-GVGRTGTM-FACQRDGVTPDIL--TLSKTLGAGLPLA  281 (433)
T ss_dssp             EEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSS-STHHHHTCCCSEE--EECHHHHTTSSCE
T ss_pred             EEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CCCcCchH-hHHhhcCCCCCEE--EecccccCCCCee
Confidence            8888655444 3 344    9999999999999999999975 43222210 011   1 35665  566988 457789


Q ss_pred             EEEeeCCCcchhhHHHhhcccCCC--CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC----C-C
Q 010008          314 MIFFKKDPVLGVELESAINNAVFP--GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL----G-Y  386 (520)
Q Consensus       314 ~I~~~~~~~~~~~l~~~i~~~~~p--~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~----G-~  386 (520)
                      ++++++      ++.+.+....+.  +..+++.. ..++..++++.+.+.   ++.+++.++++.+.+.|++.    + +
T Consensus       282 ~~~~~~------~~~~~~~~~~~~~~~t~~~~~~-~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~l~~~~~~~  351 (433)
T 1zod_A          282 AIVTSA------AIEERAHELGYLFYTTHVSDPL-PAAVGLRVLDVVQRD---GLVARANVMGDRLRRGLLDLMERFDCI  351 (433)
T ss_dssp             EEEECH------HHHHHHHHTTCCCCCTTTTCHH-HHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred             EEEEhH------HHHHhhccCCCCCCCCCCcCHH-HHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            999987      676666542211  22333333 334444467654432   34566777788888877652    2 2


Q ss_pred             EEecCCCCCeeEEEEecCC-------CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHH
Q 010008          387 KLVSGGSDNHLVLVDLRPM-------GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVA  459 (520)
Q Consensus       387 ~v~~~gt~~~~~~vd~~~~-------g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~  459 (520)
                      ..+.+  ...++++++...       ..+...+.+.|.+.||.+..    |.... .++.+||+.+..    .+++|+++
T Consensus       352 ~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~----~~~~~-~~~~lRi~~~~~----~t~~~i~~  420 (433)
T 1zod_A          352 GDVRG--RGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNI----VQLPG-MGGVFRIAPPLT----VSEDEIDL  420 (433)
T ss_dssp             EEEEE--ETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCE----ECCTT-SCCEEEECCCTT----CCHHHHHH
T ss_pred             EEEEE--EEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEec----cCCCC-CCCEEEEECCcC----CCHHHHHH
Confidence            22222  234556666421       12245677777789999843    32111 247899986643    35899999


Q ss_pred             HHHHHHHHHH
Q 010008          460 IADFIHEGVE  469 (520)
Q Consensus       460 la~~i~~~l~  469 (520)
                      +++.|+++++
T Consensus       421 ~l~~l~~~l~  430 (433)
T 1zod_A          421 GLSLLGQAIE  430 (433)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988875

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.79  E-value=8.6e-18  Score=177.46  Aligned_cols=317  Identities=16%  Similarity=0.060  Sum_probs=192.1

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCC-CCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC--
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRY-YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--  181 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ry-y~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~--  181 (520)
                      .++.|.+|+...+.+..   +  .++ ....+...+    .+++++++++.+.++   .+..++|++|+.+++.++..  
T Consensus        67 ~~~~v~~a~~~~~~~~~---~--~~~~~~~~~~~~~----l~~~la~~~~~~~~~---v~~~~ggsea~~~al~~~~~~~  134 (449)
T 3a8u_X           67 TRKEIQEAVAKQLSTLD---Y--SPGFQYGHPLSFQ----LAEKITDLTPGNLNH---VFFTDSGSECALTAVKMVRAYW  134 (449)
T ss_dssp             SCHHHHHHHHHHTTTCS---C--CCSSSCCCHHHHH----HHHHHHTTSSTTEEE---EEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCC---C--ccccccCCHHHHH----HHHHHHHhCCCCCCE---EEEcCcHHHHHHHHHHHHHHHH
Confidence            47999999988875421   1  112 111222333    336788888776542   23345677999999887753  


Q ss_pred             ------CCCEEEEcCCCCCcccccccccccccccccc------------ceEEEEEcccCCC-C-CCCC--------HHH
Q 010008          182 ------PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS------------IYFESMPYRLDES-T-GLVD--------YDM  233 (520)
Q Consensus       182 ------pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g------------~~~~~v~~~~d~~-~-~~iD--------~d~  233 (520)
                            +||+|++.++.|.+.....       +...|            ..+..++++.... . ..+|        +++
T Consensus       135 ~~~g~~~~~~vi~~~~~yhg~~~~~-------~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~  207 (449)
T 3a8u_X          135 RLKGQATKTKMIGRARGYHGVNIAG-------TSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADE  207 (449)
T ss_dssp             HHTTCTTCCEEEEETTCCCCSSHHH-------HHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCcCCCChhh-------hhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHH
Confidence                  7899999998775432111       11111            1124444332100 0 1246        999


Q ss_pred             HHHHhhh---cCCcEEEEcCCCCC-C-CCC----HHHHHHHHHHhCCEEEEechhh-ccccccccc-C-CCCC-cccEEE
Q 010008          234 LEKTAIL---FRPKLIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHI-SGLVAASVV-A-DPFK-YCDVVT  300 (520)
Q Consensus       234 le~~i~~---~~pklIi~~~s~~p-~-~~d----~~~i~~ia~~~g~~li~D~Ah~-~gli~~~~~-~-~p~~-~aDiv~  300 (520)
                      |+++++.   .++++|+++..+++ + ..+    +++|+++|+++|++||+|++|. .|..  +.. . ..+. ..|++ 
T Consensus       208 le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~--g~~~~~~~~~~~~di~-  284 (449)
T 3a8u_X          208 LLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRT--GSMFGADSFGVTPDLM-  284 (449)
T ss_dssp             HHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT--SSSSHHHHHTCCCSEE-
T ss_pred             HHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc--CcchhhhhcCCCCCEE-
Confidence            9999874   25678887754333 3 577    9999999999999999999974 3321  210 0 0001 35777 


Q ss_pred             eccCcccCC--CCceEEEeeCCCcchhhHHHhhccc---------CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHH
Q 010008          301 TTTHKSLRG--PRGGMIFFKKDPVLGVELESAINNA---------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK  369 (520)
Q Consensus       301 ~S~hK~l~G--prgG~I~~~~~~~~~~~l~~~i~~~---------~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~  369 (520)
                       |++|+|.|  .|.|++++++      ++.+.+...         ...+..++ +...+++...+++.+...   ++.++
T Consensus       285 -s~sK~l~~G~~~~G~~~~~~------~~~~~l~~~~~~~~~~~~~~~~t~~~-~~~~~aa~~aal~~~~~~---~~~~~  353 (449)
T 3a8u_X          285 -CIAKQVTNGAIPMGAVIAST------EIYQTFMNQPTPEYAVEFPHGYTYSA-HPVACAAGLAALCLLQKE---NLVQS  353 (449)
T ss_dssp             -EECGGGGTTSSCCEEEEEEH------HHHHHHHTCSSCTTSCSSCCCCTTTT-CHHHHHHHHHHHHHHHHT---THHHH
T ss_pred             -EEcccccCCCCceEEEEECH------HHHHHhhccCcccccccccccCCCcc-cHHHHHHHHHHHHHHHhc---CHHHH
Confidence             55699965  6789999987      666666442         11112222 334444445567655432   35677


Q ss_pred             HHHHHHHHHHHHHHCC-CEEec--CCCCCeeEEEEecCCCC----CHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEE
Q 010008          370 VVSNCRALASRLVELG-YKLVS--GGSDNHLVLVDLRPMGI----DGARVEKILDMASITLNKNSVPGDKSALVPGGIRI  442 (520)
Q Consensus       370 i~~na~~l~~~L~~~G-~~v~~--~gt~~~~~~vd~~~~g~----~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRi  442 (520)
                      +.++.+.+.+.|.+.+ ++++.  .+ ...++++++.....    +...+.+.|.+.||.+..    +      .+.+||
T Consensus       354 ~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~----~------g~~iRi  422 (449)
T 3a8u_X          354 VAEVAPHFEKALHGIKGAKNVIDIRN-FGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRF----G------GDTLQF  422 (449)
T ss_dssp             HHHHHHHHHHHHHTTTTSTTEEEEEE-ETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEE----E------TTEEEE
T ss_pred             HHHHHHHHHHHHHHHhcCCCeEEEee-eEEEEEEEEecCcccccccHHHHHHHHHHCCcEEec----C------CCEEEE
Confidence            7788888888887632 33221  11 23567777753211    122577777788999853    2      168999


Q ss_pred             ccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          443 GSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       443 g~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +.+..    .+++|++++++.|+++++
T Consensus       423 s~~~~----~t~~~i~~~l~~l~~~l~  445 (449)
T 3a8u_X          423 GPTFN----SKPQDLDRLFDAVGEVLN  445 (449)
T ss_dssp             CCCTT----CCHHHHHHHHHHHHHHHH
T ss_pred             ECCCc----CCHHHHHHHHHHHHHHHH
Confidence            97643    458999999999998875

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.79  E-value=1.8e-16  Score=167.45  Aligned_cols=330  Identities=14%  Similarity=0.055  Sum_probs=188.4

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC----
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  180 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all----  180 (520)
                      .+|.|.+|+...+.... . .+.   ....+...+    .+++++++++.+.+    .+..++|++|+..++.++.    
T Consensus        66 ~~p~v~~A~~~~~~~~~-~-~~~---~~~~~~~~~----la~~l~~~~~~~~~----v~~~~ggseA~~~al~~~~~~~~  132 (452)
T 3n5m_A           66 GRKELAEAAYKQLQTLS-Y-FPM---SQSHEPAIK----LAEKLNEWLGGEYV----IFFSNSGSEANETAFKIARQYYA  132 (452)
T ss_dssp             CCHHHHHHHHHHHTTCC-C-CCT---TSEEHHHHH----HHHHHHHHHTSCEE----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcC-C-ccc---ccCCHHHHH----HHHHHHHhCCCCce----EEEeCchHHHHHHHHHHHHHHHH
Confidence            47999999988775421 1 111   112232232    34678888887653    2345677899999998876    


Q ss_pred             -C---CCCEEEEcCCCCCcccccccccccccc-----ccccceEEEEEcccCCCCCCCC---------HHHHHHHhh---
Q 010008          181 -K---PHDRIMGLDLPHGGHLSHGFMTPKRRV-----SGTSIYFESMPYRLDESTGLVD---------YDMLEKTAI---  239 (520)
Q Consensus       181 -~---pGD~Vl~~~~~~~ghls~g~~~~~~~v-----~~~g~~~~~v~~~~d~~~~~iD---------~d~le~~i~---  239 (520)
                       +   ++|+|++.++.|.|.............     .-....+..++.+.......-|         +++|+++++   
T Consensus       133 ~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~  212 (452)
T 3n5m_A          133 QKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWEL  212 (452)
T ss_dssp             TTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHC
T ss_pred             hcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcC
Confidence             5   889999999887543210000000000     0000011222211100000112         899999987   


Q ss_pred             hcCCcEEEEcCC-CCCC-CCC----HHHHHHHHHHhCCEEEEechhhccccccccc-CC-CCC-cccEEEeccCccc-CC
Q 010008          240 LFRPKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-AD-PFK-YCDVVTTTTHKSL-RG  309 (520)
Q Consensus       240 ~~~pklIi~~~s-~~p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~~-p~~-~aDiv~~S~hK~l-~G  309 (520)
                      ..++++|+++.+ +|.+ ..+    +++|+++|++||++||+|++|. |+...+.. .. ... ..|+++  ++|++ .|
T Consensus       213 ~~~~~~vi~ep~~~n~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~g~~g~~~~~~~~~~~~di~t--~sK~l~~G  289 (452)
T 3n5m_A          213 SETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVIC-GFGRTGKAFGFMNYDVKPDIIT--MAKGITSA  289 (452)
T ss_dssp             GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTCCCSEEE--ECGGGGTT
T ss_pred             CCCEEEEEEccccCCCCeeeCCHHHHHHHHHHHHHcCCEEEEecchh-CCCcccccchhhhcCCCCCEEe--ecccccCC
Confidence            236788888866 4443 454    9999999999999999999964 43322211 00 011 356765  55987 46


Q ss_pred             -CCceEEEeeCCCcchhhHHHhhcc----cC--CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH
Q 010008          310 -PRGGMIFFKKDPVLGVELESAINN----AV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLV  382 (520)
Q Consensus       310 -prgG~I~~~~~~~~~~~l~~~i~~----~~--~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~  382 (520)
                       +|.|++++++      ++.+.+..    ..  ..+..+++.....+++ ++|+.+..+   ++.+++.++.+++.+.|.
T Consensus       290 ~~~ig~~~~~~------~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~-aal~~~~~~---~~~~~~~~~~~~l~~~L~  359 (452)
T 3n5m_A          290 YLPLSATAVKR------EIYEAFKGKGEYEFFRHINTFGGNPAACALAL-KNLEIIENE---NLIERSAQMGSLLLEQLK  359 (452)
T ss_dssp             SSCCEEEEEEH------HHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHH-HHHHHHHHT---THHHHHHHHHHHHHHHHH
T ss_pred             CcceEEEEECH------HHHHHHhhccCCCCccccCCCCCCHHHHHHHH-HHHHHHHhc---cHHHHHHHHHHHHHHHHH
Confidence             6779999988      77777643    11  1122333333333433 466654332   345666667777777776


Q ss_pred             HC--C---CEEecCCCCCeeEEEEecCCCC-----C---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccc
Q 010008          383 EL--G---YKLVSGGSDNHLVLVDLRPMGI-----D---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTT  449 (520)
Q Consensus       383 ~~--G---~~v~~~gt~~~~~~vd~~~~g~-----~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt  449 (520)
                      +.  +   +..+.+  ...++++++.....     +   ...+.+.|.+.||.+.....+.   +..++.|||+.+..  
T Consensus       360 ~~~~~~~~~~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~---~~~~~~iRi~~~~~--  432 (452)
T 3n5m_A          360 EEIGEHPLVGDIRG--KGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTT---AGYNNILTLAPPLV--  432 (452)
T ss_dssp             HHHTTCTTEEEEEE--SSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSS---TTCCCEEEECCCTT--
T ss_pred             HHHhcCCCeEEEEE--EEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCccc---CCCCCEEEEECCCC--
Confidence            52  2   222222  12344555521111     1   1356777888999986432221   22357899986644  


Q ss_pred             cCCCHHHHHHHHHHHHHHHH
Q 010008          450 RGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       450 ~g~~~~d~~~la~~i~~~l~  469 (520)
                        .+++|++++++.|+++++
T Consensus       433 --~t~e~i~~~l~~l~~~l~  450 (452)
T 3n5m_A          433 --ISSEEIAFVIGTLKTAME  450 (452)
T ss_dssp             --CCHHHHHHHHHHHHHHHT
T ss_pred             --CCHHHHHHHHHHHHHHHH
Confidence              458999999999988764

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.78  E-value=1e-18  Score=181.53  Aligned_cols=278  Identities=13%  Similarity=0.040  Sum_probs=174.6

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCC----EEEEcCCCCCcccccccccccccccccc
Q 010008          138 DELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHD----RIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       138 d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD----~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      .++++...+++. ..|.+.+.- -+|.+++|+ +|+..++.++++|||    +|++.+|.|.++..        .+...|
T Consensus        71 ~~lr~aia~~~~-~~g~~~~~~-~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~--------~~~~~g  140 (391)
T 3bwn_A           71 PELEDAIKDLHG-VVGNAATED-RYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVE--------ETTYVR  140 (391)
T ss_dssp             HHHHHHHHHHHH-HHCSBCCSS-SEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHH--------HHHTTC
T ss_pred             HHHHHHHHHHHH-hcCCCCCCC-CeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHH--------HHHHcC
Confidence            456555445554 445542110 156678888 899999999999999    99999998865431        223345


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhC--CEEEEechhhcccccccc
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVG--ALLMMDMAHISGLVAASV  288 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g--~~li~D~Ah~~gli~~~~  288 (520)
                      .  +++.+++|.+.  ++        .+ ++|+|++++|+||+  .++  +|++  ++++  +++|+|++|+.+    . 
T Consensus       141 ~--~~~~~~~d~~~--l~--------~~-~~k~v~l~~p~NPtG~~~~--~l~~--~~~~~~~~ii~De~y~~~----~-  198 (391)
T 3bwn_A          141 S--GMYKWEGDAWG--FD--------KK-GPYIELVTSPNNPDGTIRE--TVVN--RPDDDEAKVIHDFAYYWP----H-  198 (391)
T ss_dssp             B--TTEEEEEESTT--CC--------CC-SCEEEEEESSCTTTCCCCC--CCC-------CCCEEEEECTTCST----T-
T ss_pred             C--eEEEecCCHHH--cC--------CC-CCEEEEECCCCCCCchhHH--HHHH--HhhcCCCEEEEeCCCCCC----C-
Confidence            4  34455555332  22        13 78999999999997  443  4433  2255  999999998632    1 


Q ss_pred             cCCCC---CcccEEEeccCccc--CCCCceEEEe-eCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc---
Q 010008          289 VADPF---KYCDVVTTTTHKSL--RGPRGGMIFF-KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ---  359 (520)
Q Consensus       289 ~~~p~---~~aDiv~~S~hK~l--~GprgG~I~~-~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~---  359 (520)
                       ..++   ...+++++|+||++  +|+|.||+++ ++      ++.+.+.........+. +.....++..+|+...   
T Consensus       199 -~~~l~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~------~l~~~l~~~~~~~~~~~-~~~~q~a~~~~l~~~~~~~  270 (391)
T 3bwn_A          199 -YTPITRRQDHDIMLFTFSKITGHAGSRIGWALVKDK------EVAKKMVEYIIVNSIGV-SKESQVRTAKILNVLKETC  270 (391)
T ss_dssp             -TSCCCCCBCCSEEEEEHHHHHSCGGGCEEEEEECCH------HHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHHHHHT
T ss_pred             -CCccccCCCCeEEEEechhhcCCCccceEEEEecCH------HHHHHHHHHhcccccCC-CHHHHHHHHHHHhCcchhc
Confidence             1122   14579999999986  6889999998 55      56665544321111223 3333334444665432   


Q ss_pred             ------CchhHHHHHHHHHHHHHHHHHHHHC-CCEEecC-CC-----------CCeeEEEEecCCCCCHHHHHHHHhhcC
Q 010008          360 ------SPEFKVYQNKVVSNCRALASRLVEL-GYKLVSG-GS-----------DNHLVLVDLRPMGIDGARVEKILDMAS  420 (520)
Q Consensus       360 ------~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~-gt-----------~~~~~~vd~~~~g~~~~~~~~~L~~~g  420 (520)
                            ....++..+.+.++++.+.+.|.+. |+.+..+ ++           ...++|+++..    .+.+.+.|+++|
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~----~~~~~~~l~~~g  346 (391)
T 3bwn_A          271 KSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKE----ETDLVSELRRHK  346 (391)
T ss_dssp             TCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESS----SCCHHHHHHHTT
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCc----HHHHHHHHHHCC
Confidence                  3345777888889999999999885 6665432 11           11256777753    245778889999


Q ss_pred             eEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          421 ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       421 I~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      |.+..+...|   . .++++||++.      .++++++++++.|.++++
T Consensus       347 V~v~pg~~fg---~-~~~~iRis~~------~~~e~i~~~~~~L~~~~~  385 (391)
T 3bwn_A          347 VMSRAGERCG---S-DKKHVRVSML------SREDVFNVFLERLANMKL  385 (391)
T ss_dssp             EECEEGGGGT---C-CTTEEEEESC------SCHHHHHHHHHHHHSCC-
T ss_pred             EEEccCCCCC---C-CCCEEEEEec------CCHHHHHHHHHHHHHHHH
Confidence            9995443222   1 3578999975      247889999998877654

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.78  E-value=5.6e-19  Score=185.82  Aligned_cols=322  Identities=10%  Similarity=0.020  Sum_probs=199.9

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCC--CCCCCCCCCcchhHHHHHHHHHHHHHHHcC--CCCCCCceeeecCC
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSE--GLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLS  167 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~--G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg--~~~~~~~~~V~~~s  167 (520)
                      ..|+|..+++.  .++.+++++...+...-..  +|+...  .|.....++++...+++.+..+  ++++    +|.+++
T Consensus        57 ~~i~l~~g~~~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~--~G~~~~~~lr~aia~~~~~~~~~~~~~~----~iv~t~  130 (427)
T 2hox_A           57 CSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNP--VSNFISFELEKTIKELHEVVGNAAAKDR----YIVFGV  130 (427)
T ss_dssp             CCEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSS--CCTTCCHHHHHHHHHHHHHHTCBCCTTC----EEEEES
T ss_pred             ceEEecCcCCCCCCCHHHHHhHHhhhhcCCcccccCCCCC--CCccchHHHHHHHHHHHHHhCCcCCCCC----EEEEeC
Confidence            45778777764  3467777877666321111  244321  0311235667665566665544  3454    566788


Q ss_pred             hH-HHHHHHHHhh--------CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHh
Q 010008          168 GS-PANFEVYTAI--------LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTA  238 (520)
Q Consensus       168 Gs-~A~~~~l~al--------l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i  238 (520)
                      |+ +|+.+++.++        ++|||+|++++|.|.++..        .+...|.  +++.       +.+|+++|++++
T Consensus       131 G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~--------~~~~~g~--~~~~-------~~~d~~~l~~~~  193 (427)
T 2hox_A          131 GVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFRE--------QTKYFDK--KGYV-------WAGNAANYVNVS  193 (427)
T ss_dssp             HHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHH--------HHHHSCB--TTEE-------EEEEGGGGTTCS
T ss_pred             CHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHH--------HHHHcCC--eeee-------ecCCHHHHHHhh
Confidence            87 8999999999        9999999999998754321        2223343  2222       235677888877


Q ss_pred             hhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCC-CcccEEEeccCccc--CCCCce
Q 010008          239 ILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-KYCDVVTTTTHKSL--RGPRGG  313 (520)
Q Consensus       239 ~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~-~~aDiv~~S~hK~l--~GprgG  313 (520)
                      ++ ++|+|++++|+||+  ..+ +    +++  ++..+.|.+++....  .  ...+ ...+++++|+||++  +|.|.|
T Consensus       194 ~~-~~k~v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~~~~--s--~~~~~~~~~i~~~S~SK~~g~~G~RiG  261 (427)
T 2hox_A          194 NP-EQYIEMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYWPHY--T--PIKYKADEDILLFTMSKFTGHSGSRFG  261 (427)
T ss_dssp             CG-GGEEEEEESSCTTTCCCCC-C----SST--TCEEEEECTTCSTTT--S--CCCSCBCCSEEEEEHHHHTSCGGGCCE
T ss_pred             cC-CceEEEEcCCCCCcccccH-H----HHc--CCCEEEeecccCCCC--C--ccccCCCceEEEEeChhcCCCCCceEE
Confidence            76 79999999999997  566 3    333  678888987542110  0  0111 24689999999986  688899


Q ss_pred             EEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc----------CchhHHHHHHHHHHHHHHHHHHHH
Q 010008          314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ----------SPEFKVYQNKVVSNCRALASRLVE  383 (520)
Q Consensus       314 ~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~----------~~~~~~~~~~i~~na~~l~~~L~~  383 (520)
                      |++++++     ++.+++.........+.+...+.++ ..+|+...          ...++...+++.++++.+.+.|.+
T Consensus       262 ~~~~~~~-----~l~~~l~~~~~~~~~~~~~~~q~a~-~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  335 (427)
T 2hox_A          262 WALIKDE-----SVYNNLLNYMTKNTEGTPRETQLRS-LKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQ  335 (427)
T ss_dssp             EEEECCH-----HHHHHHHHHHHHHTSSCCHHHHHHH-HHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEECCH-----HHHHHHHHHHHhcCCCCCHHHHHHH-HHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999532     6766665433222234444444443 33555321          223355677888889999999987


Q ss_pred             C-CCEE--ec-C----------CCCCeeEEEEecCCCCCHHH-HHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCcc
Q 010008          384 L-GYKL--VS-G----------GSDNHLVLVDLRPMGIDGAR-VEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMT  448 (520)
Q Consensus       384 ~-G~~v--~~-~----------gt~~~~~~vd~~~~g~~~~~-~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~t  448 (520)
                      . |+.+  +. +          .....++|+++..   +..+ +..+|++.||.+..+...   +. .++++||++.   
T Consensus       336 ~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~---~~~~~~~~ll~~~gI~v~pg~~f---~~-~~~~~Ris~~---  405 (427)
T 2hox_A          336 SDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW---EEDKDCYQTFQNGRINTQNGVGF---EA-SSRYVRLSLI---  405 (427)
T ss_dssp             SSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS---GGGCSHHHHHHHTTEECEEGGGG---TS-CTTEEEEECS---
T ss_pred             CcCccccccccccccccccccCCCCceEEEEECCC---cHHHHHHHHHHHCCEEEcCCCcc---CC-CCCEEEEEec---
Confidence            5 7765  11 1          1124567788753   2333 455567899999543221   12 4678999975   


Q ss_pred             ccCCCHHHHHHHHHHHHHHHH
Q 010008          449 TRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       449 t~g~~~~d~~~la~~i~~~l~  469 (520)
                         .+++++++..+.|.++++
T Consensus       406 ---~~~e~l~~~l~~l~~~~~  423 (427)
T 2hox_A          406 ---KTQDDFDQLMYYLKDMVK  423 (427)
T ss_dssp             ---SCHHHHHHHHHHHHHHHT
T ss_pred             ---CCHHHHHHHHHHHHHHHh
Confidence               247889888888877764

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.78  E-value=8.5e-17  Score=170.65  Aligned_cols=323  Identities=12%  Similarity=0.025  Sum_probs=193.3

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC---
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---  181 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~---  181 (520)
                      .+|.|.+|+...+... .....+ +|  ..+...+    .+++++++++...++   .+..+||++|+..++..+.+   
T Consensus        92 ~~p~v~~A~~~~~~~~-~~~~~~-~~--~~~~~~~----L~e~la~~~~~~~~~---v~~~~sGseA~~~Alk~a~~~~~  160 (457)
T 3tfu_A           92 GHPALDQALTTQLRVM-NHVMFG-GL--THEPAAR----LAKLLVDITPAGLDT---VFFSDSGSVSVEVAAKMALQYWR  160 (457)
T ss_dssp             TCHHHHHHHHHHHHHC-SCCCSS-SE--ECHHHHH----HHHHHHHHSSTTEEE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhc-cCcccc-cc--CCHHHHH----HHHHHHHhCCCCcCE---EEEeCcHHHHHHHHHHHHHHHHH
Confidence            5899999998877542 211111 11  1222223    347888999776542   23456788999999887764   


Q ss_pred             ----CCC-EEEEcCCCCCcccccccc------ccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh--cCCcEEEE
Q 010008          182 ----PHD-RIMGLDLPHGGHLSHGFM------TPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIA  248 (520)
Q Consensus       182 ----pGD-~Vl~~~~~~~ghls~g~~------~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~--~~pklIi~  248 (520)
                          ||+ +|++.++.|.|.......      .+..........+..++++.+ .....|+++|+++++.  .++++|++
T Consensus       161 ~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~d~~~le~~l~~~~~~~aavi~  239 (457)
T 3tfu_A          161 GRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPR-DYDPAYSAAFEAQLAQHAGELAAVVV  239 (457)
T ss_dssp             HTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCS-SCCHHHHHHHHHHHHHHGGGEEEEEE
T ss_pred             hcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCc-ccCHHHHHHHHHHHHhCCCCEEEEEE
Confidence                665 888888876443110000      000000000001122333221 1123588999999873  26788888


Q ss_pred             cC-CCCCC--CCC----HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC----cccEEEeccCcccCC--CCceEE
Q 010008          249 GA-SAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSLRG--PRGGMI  315 (520)
Q Consensus       249 ~~-s~~p~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~----~aDiv~~S~hK~l~G--prgG~I  315 (520)
                      .. .++++  ..+    +++|+++|+++|++||+|+++ .|+...+.. ..++    ..|++  |++|.|+|  +|.|++
T Consensus       240 ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-~g~gr~G~~-~a~~~~~~~pdii--t~sK~l~gG~~~lG~v  315 (457)
T 3tfu_A          240 EPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIA-TGFGRTGAL-FAADHAGVSPDIM--CVGKALTGGYLSLAAT  315 (457)
T ss_dssp             CSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTT-TTTTTTSSS-STHHHHTCCCSEE--EECGGGGTTSSCCEEE
T ss_pred             eCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCc-cCCccccch-hHhHhcCCCceEE--EEChhhhCCCcceEEE
Confidence            76 55543  332    899999999999999999995 444322211 1111    35777  55699977  689999


Q ss_pred             EeeCCCcchhhHHHhhc---cc--CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC----CC
Q 010008          316 FFKKDPVLGVELESAIN---NA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL----GY  386 (520)
Q Consensus       316 ~~~~~~~~~~~l~~~i~---~~--~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~----G~  386 (520)
                      ++++      ++.+.+.   ..  ......+++.....+++ ++|+.+.++   .+.+++.++.+++.+.|.+.    ++
T Consensus       316 ~~~~------~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~-aaL~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~v  385 (457)
T 3tfu_A          316 LCTA------DVAHTISAGAAGALMHGPTFMANPLACAVSV-ASVELLLGQ---DWRTRITELAAGLTAGLDTARALPAV  385 (457)
T ss_dssp             EEEH------HHHHHHHHSSSCSCCCCCTTTTCHHHHHHHH-HHHHHHHTS---CHHHHHHHHHHHHHHHHGGGGGSTTE
T ss_pred             EEcH------HHHHHhhccCCCceeEecCCCcCHHHHHHHH-HHHHHHhhh---HHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence            9998      6776663   11  11122333333333333 467765443   34566777788888888763    23


Q ss_pred             EEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          387 KLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       387 ~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      ..+.+  ...++++++.. ..+..++.+.|.+.||.+.    |.      .+.+||+.+..    .+++|++++++.|++
T Consensus       386 ~~vr~--~G~~~~i~l~~-~~~~~~~~~~l~~~Gv~v~----~~------~~~lRi~p~~~----~t~eei~~~l~~L~~  448 (457)
T 3tfu_A          386 TDVRV--CGAIGVIECDR-PVDLAVATPAALDRGVWLR----PF------RNLVYAMPPYI----CTPAEITQITSAMVE  448 (457)
T ss_dssp             EEEEE--CSSCEEEEESS-CCCHHHHHHHHHHTTEECC----CB------TTEEEECCCTT----CCHHHHHHHHHHHHH
T ss_pred             eeeec--CCeEEEEEECC-cccHHHHHHHHHHCCeEEE----ec------CCEEEEECCCC----CCHHHHHHHHHHHHH
Confidence            22222  23456667643 3456778888888899984    21      25899986644    358999999999999


Q ss_pred             HHHH
Q 010008          467 GVEI  470 (520)
Q Consensus       467 ~l~~  470 (520)
                      +++.
T Consensus       449 ~l~~  452 (457)
T 3tfu_A          449 VARL  452 (457)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.77  E-value=1.8e-16  Score=166.40  Aligned_cols=322  Identities=14%  Similarity=0.097  Sum_probs=188.2

Q ss_pred             ccceEecCC--C---CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh
Q 010008           94 KSLELIASE--N---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG  168 (520)
Q Consensus        94 ~~i~Liase--n---~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG  168 (520)
                      ..|++.++.  +   ..+|.|.+|+...+.+....+||.       +...++    +++++++++ ..++   .+..+||
T Consensus        56 ~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-------~~~~~l----~~~la~~~~-~~~~---v~~~~sG  120 (434)
T 3l44_A           56 KYIDYLAAYGPIITGHAHPHITKAITTAAENGVLYGTPT-------ALEVKF----AKMLKEAMP-ALDK---VRFVNSG  120 (434)
T ss_dssp             EEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSCCSSCC-------HHHHHH----HHHHHHHCT-TCSE---EEEESSH
T ss_pred             EEEECCCchhccccCCCCHHHHHHHHHHHHhCcCCCCCC-------HHHHHH----HHHHHHhCC-CCCE---EEEeCch
Confidence            345655432  2   258999999988876533223332       222222    357888886 4442   2345678


Q ss_pred             HHHHHHHHHhhCC--CCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCC-------------CCHHH
Q 010008          169 SPANFEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL-------------VDYDM  233 (520)
Q Consensus       169 s~A~~~~l~all~--pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~-------------iD~d~  233 (520)
                      ++|+..++..+..  ++|+|++.++.|.|....       .....|.......++.  ..+.             -|+++
T Consensus       121 sea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~-------~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~  191 (434)
T 3l44_A          121 TEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDL-------VLVAAGSGPSTLGTPD--SAGVPQSIAQEVITVPFNNVET  191 (434)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGG-------GGBC-------CCCBS--STTCCHHHHTTEEEECTTCHHH
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHH-------HHhhcCCcccccCCCC--cCCCCCcCCCceEecCcccHHH
Confidence            8999999887654  789999999876443211       1111221111001110  0011             28999


Q ss_pred             HHHHhhhc--CCcEEEEcCCCCCC--CCC----HHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEec
Q 010008          234 LEKTAILF--RPKLIIAGASAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTT  302 (520)
Q Consensus       234 le~~i~~~--~pklIi~~~s~~p~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S  302 (520)
                      |+++++..  ++++|+++.+++++  ..+    +++|+++|++||++||+|++|. |+ ..+...  ..+. ..|+++  
T Consensus       192 le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~-g~-~~g~~~~~~~~~~~~di~t--  267 (434)
T 3l44_A          192 LKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVIT-AF-RFMYGGAQDLLGVTPDLTA--  267 (434)
T ss_dssp             HHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTT-TT-TSSSSCHHHHHTCCCSEEE--
T ss_pred             HHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-ce-eccccHHHHHcCCCCCeee--
Confidence            99998742  56777777554433  455    9999999999999999999964 44 222110  0001 256665  


Q ss_pred             cCccc-CCCCceEEEeeCCCcchhhHHHhhccc--CCC-CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 010008          303 THKSL-RGPRGGMIFFKKDPVLGVELESAINNA--VFP-GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA  378 (520)
Q Consensus       303 ~hK~l-~GprgG~I~~~~~~~~~~~l~~~i~~~--~~p-~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~  378 (520)
                      ++|++ +|+|.|++++++      ++.+.+...  .+. +..++ +....++..++++.+..   +++.+++.++.+++.
T Consensus       268 ~sK~~~~G~~iG~~~~~~------~i~~~~~~~~~~~~~~t~~~-~~~a~aaa~aal~~~~~---~~~~~~~~~~~~~l~  337 (434)
T 3l44_A          268 LGKVIGGGLPIGAYGGKK------EIMEQVAPLGPAYQAGTMAG-NPASMASGIACLEVLQQ---EGLYEKLDELGATLE  337 (434)
T ss_dssp             EEGGGGTTSSCEEEEECH------HHHTTBTTTSSBCCCCTTTT-CHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHH
T ss_pred             hhhhhcCCcCeeeEEEcH------HHHHhhccCCCcccCCCCCc-CHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHH
Confidence            55988 567889998887      677666542  111 22233 33344444446776544   344566666777777


Q ss_pred             HHHHH----CCCE-EecCCCCCeeEEEEecCCCC------------CHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEE
Q 010008          379 SRLVE----LGYK-LVSGGSDNHLVLVDLRPMGI------------DGARVEKILDMASITLNKNSVPGDKSALVPGGIR  441 (520)
Q Consensus       379 ~~L~~----~G~~-v~~~gt~~~~~~vd~~~~g~------------~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giR  441 (520)
                      +.|.+    .++. .+.+  ...++++++.....            ....+.+.|.+.||.+.    |+     ....+|
T Consensus       338 ~~L~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~-----~~~~~r  406 (434)
T 3l44_A          338 KGILEQAAKHNIDITLNR--LKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLA----PS-----KYEAWF  406 (434)
T ss_dssp             HHHHHHHHHTTCCEEEEE--ETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECC----SS-----TTCCEE
T ss_pred             HHHHHHHHhCCCCEEEEe--eccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEe----ec-----CCCcEE
Confidence            77655    3432 2221  23455666532221            12456777888999984    32     134688


Q ss_pred             EccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          442 IGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       442 ig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +++      ..+++|++++.+.|+++++.
T Consensus       407 l~~------~~t~e~i~~~l~~l~~~l~~  429 (434)
T 3l44_A          407 LTT------EHTKEDIEYTIEAVGRAFAA  429 (434)
T ss_dssp             CCT------TCCHHHHHHHHHHHHHHHHH
T ss_pred             Eec------ccCHHHHHHHHHHHHHHHHH
Confidence            852      24689999999999998864

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.77  E-value=4.1e-16  Score=165.31  Aligned_cols=329  Identities=12%  Similarity=0.005  Sum_probs=186.8

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC---
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---  181 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~---  181 (520)
                      .+|.|.+|+...+.+.. ..++...|  ..+...+    ..++++++++.+.++   .+..+||++|+.+++.++.+   
T Consensus        68 ~~p~v~~A~~~~~~~~~-~~~~~~~~--~~~~~~~----la~~l~~~~~~~~~~---v~~~~gGseA~~~al~~~~~~~~  137 (460)
T 3gju_A           68 GRQKIADAIATQAKNLA-YYHAYVGH--GTEASIT----LAKMIIDRAPKGMSR---VYFGLSGSDANETNIKLIWYYNN  137 (460)
T ss_dssp             CCHHHHHHHHHHHHHHS-CCCCCTTC--CCHHHHH----HHHHHHHHSCTTEEE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcc-cccccccc--CCHHHHH----HHHHHHhhCCCCcCE---EEEeCchHHHHHHHHHHHHHHHH
Confidence            47899999887765421 11221111  1222222    346788888766542   23346677999999988763   


Q ss_pred             -----CCCEEEEcCCCCCcccccc-----ccccccccccccceEEEEEccc--CCCCCCCC--------HHHHHHHhhh-
Q 010008          182 -----PHDRIMGLDLPHGGHLSHG-----FMTPKRRVSGTSIYFESMPYRL--DESTGLVD--------YDMLEKTAIL-  240 (520)
Q Consensus       182 -----pGD~Vl~~~~~~~ghls~g-----~~~~~~~v~~~g~~~~~v~~~~--d~~~~~iD--------~d~le~~i~~-  240 (520)
                           ++|+|++.++.|.|.....     ...+..........+..++++.  ...+...|        +++|+++++. 
T Consensus       138 ~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~  217 (460)
T 3gju_A          138 VLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAE  217 (460)
T ss_dssp             HTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhc
Confidence                 5699999998875432100     0000000001111223334322  11111233        6889888873 


Q ss_pred             --cCCcEEEEcCCCCCC--CCC----HHHHHHHHHHhCCEEEEechhhcccccccccC-CC-CC-cccEEEeccCcccCC
Q 010008          241 --FRPKLIIAGASAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA-DP-FK-YCDVVTTTTHKSLRG  309 (520)
Q Consensus       241 --~~pklIi~~~s~~p~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~-~p-~~-~aDiv~~S~hK~l~G  309 (520)
                        .++++|++..+++++  ..+    +++|+++|++||++||+|++|. |+...+... .. +. ..|++++  +|+|+|
T Consensus       218 ~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t~--sK~l~g  294 (460)
T 3gju_A          218 GPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVT-GFGRLGTMFGSDHYGIKPDLITI--AKGLTS  294 (460)
T ss_dssp             CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSCHHHHHTCCCSEEEE--CGGGTT
T ss_pred             CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcccccchHhhcCCCCCeeee--ehhhcC
Confidence              256788887655443  343    8999999999999999999965 443222100 00 01 3577755  599976


Q ss_pred             --CCceEEEeeCCCcchhhHHHhhcc------c-CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 010008          310 --PRGGMIFFKKDPVLGVELESAINN------A-VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASR  380 (520)
Q Consensus       310 --prgG~I~~~~~~~~~~~l~~~i~~------~-~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~  380 (520)
                        +|.|++++++      ++.+.+..      . ......+++..... +..++|+.+..++   +.+++.++.+.+.+.
T Consensus       295 G~~~lg~v~~~~------~i~~~~~~~~~~~~~~~~~~t~~~~~~~~a-aa~aal~~~~~~~---~~~~~~~~~~~~~~~  364 (460)
T 3gju_A          295 AYAPLSGVIVAD------RVWQVLVQGSDKLGSLGHGWTYSAHPICVA-AGVANLELIDEMD---LVTNAGETGAYFRAE  364 (460)
T ss_dssp             TSSCCEEEEEEH------HHHHHHHHHHHHHCSCSCCCTTTTCHHHHH-HHHHHHHHHHHTT---HHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECH------HHHHHHhcccccccccccCCCCCCCHHHHH-HHHHHHHHHHhcc---HHHHHHHHHHHHHHH
Confidence              7889999988      67776642      1 22222333333333 3334676543333   344555555555555


Q ss_pred             HHH----CC-CEEecCCCCCeeEEEEecCCCC----------CHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccC
Q 010008          381 LVE----LG-YKLVSGGSDNHLVLVDLRPMGI----------DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSP  445 (520)
Q Consensus       381 L~~----~G-~~v~~~gt~~~~~~vd~~~~g~----------~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~  445 (520)
                      |.+    .+ +..+.+  ...++++++.....          ....+.+.|.+.||.+.    |+.    ..+.|||+.+
T Consensus       365 l~~~l~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~~----~~~~iRi~~~  434 (460)
T 3gju_A          365 LAKAVGGHKNVGEVRG--DGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGR----AMP----QGDILGFAPP  434 (460)
T ss_dssp             HHHHHTTSTTEEEEEE--ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECE----ECS----SSCEEEECCC
T ss_pred             HHHHHhcCCCeEEEee--eeEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEe----cCC----CCCEEEEECC
Confidence            533    22 223322  12345555542110          13467777888999884    322    2478999876


Q ss_pred             CccccCCCHHHHHHHHHHHHHHHHH
Q 010008          446 AMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       446 ~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      ..    .+++|++++++.|+++++.
T Consensus       435 ~~----~t~e~i~~~l~~l~~~l~~  455 (460)
T 3gju_A          435 LC----LTREQADIVVSKTADAVKS  455 (460)
T ss_dssp             TT----CCHHHHHHHHHHHHHHHHH
T ss_pred             CC----CCHHHHHHHHHHHHHHHHH
Confidence            44    3589999999999998864

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.76  E-value=5.2e-16  Score=165.45  Aligned_cols=328  Identities=10%  Similarity=-0.011  Sum_probs=192.0

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC--
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--  181 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~--  181 (520)
                      ..+|.|.+|+...+.. +..+++. .  ...+...+    ..++++++++.+.+.   .+..+||++|+..++..+.+  
T Consensus        70 h~~p~v~~A~~~~l~~-~~~~~~~-~--~~~~~~~~----la~~l~~~~~~~~~~---v~~~~sGseA~~~Aik~a~~~~  138 (476)
T 3i5t_A           70 YGRREIVDAMAHQAMV-LPYASPW-Y--MATSPAAR----LAEKIATLTPGDLNR---IFFTTGGSTAVDSALRFSEFYN  138 (476)
T ss_dssp             BCCHHHHHHHHHHHHH-CCCCCTT-T--CBCHHHHH----HHHHHHTTSSTTCCE---EEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHh-ccCcccC-c--cCCHHHHH----HHHHHHhcCCCCcCE---EEEeCchHHHHHHHHHHHHHHH
Confidence            3589999999888754 3223321 1  12233333    336888888765542   23456788999999988753  


Q ss_pred             ------CCCEEEEcCCCCCccccc-----cccccccccccccceEEEEEcccCCCCCCCC--------HHHHHHHhhh--
Q 010008          182 ------PHDRIMGLDLPHGGHLSH-----GFMTPKRRVSGTSIYFESMPYRLDESTGLVD--------YDMLEKTAIL--  240 (520)
Q Consensus       182 ------pGD~Vl~~~~~~~ghls~-----g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD--------~d~le~~i~~--  240 (520)
                            .+++|++.++.|.|....     +...++.........+..++++........|        +++|+++++.  
T Consensus       139 ~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~  218 (476)
T 3i5t_A          139 NVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLG  218 (476)
T ss_dssp             HHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcC
Confidence                  357999999877543210     0000000000001112333333211111122        7889888864  


Q ss_pred             -cCCcEEEEcCCCCCC--CCC----HHHHHHHHHHhCCEEEEechhhccccccccc-C-C-CCC-cccEEEeccCcccCC
Q 010008          241 -FRPKLIIAGASAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-D-PFK-YCDVVTTTTHKSLRG  309 (520)
Q Consensus       241 -~~pklIi~~~s~~p~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~-p~~-~aDiv~~S~hK~l~G  309 (520)
                       .++++|++..+++++  ..+    +++|+++|+++|++||+|++|. |+...|.. . . .+. ..|++++|  |+++|
T Consensus       219 ~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~-g~gr~G~~~~~~~~~~v~pdi~t~s--K~l~~  295 (476)
T 3i5t_A          219 PDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVT-GFGRCGEWFASEKVFGVVPDIITFA--KGVTS  295 (476)
T ss_dssp             GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSCHHHHTTCCCCSEEEEC--GGGGT
T ss_pred             CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccccCceeeecccCCCcchhhhh--hhhcC
Confidence             256788887554433  333    8999999999999999999964 44322211 0 0 111 35787654  99854


Q ss_pred             --CCceEEEeeCCCcchhhHHHhhccc-------CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 010008          310 --PRGGMIFFKKDPVLGVELESAINNA-------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASR  380 (520)
Q Consensus       310 --prgG~I~~~~~~~~~~~l~~~i~~~-------~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~  380 (520)
                        ++.|++++++      ++.+.+...       ...+..+++.. ..+|..++|+.+.+   +++.+++.++.+++.+.
T Consensus       296 G~~plg~v~~~~------~i~~~~~~~~~~~~~~~~~~t~~~np~-a~aAa~aaL~~~~~---~~~~~~~~~~~~~l~~~  365 (476)
T 3i5t_A          296 GYVPLGGLAISE------AVLARISGENAKGSWFTNGYTYSNQPV-ACAAALANIELMER---EGIVDQAREMADYFAAA  365 (476)
T ss_dssp             TSSCCEEEEECH------HHHHTTSGGGCTTCEECCCCTTTTCHH-HHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHH
T ss_pred             CCcCeEEEEECH------HHHHHHhcCCcccccccccCCCCcCHH-HHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHH
Confidence              7889999987      777776542       22223344333 33333346765543   23566777788888888


Q ss_pred             HHHCC----CEEecCCCCCeeEEEEecCCCC----------CHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCC
Q 010008          381 LVELG----YKLVSGGSDNHLVLVDLRPMGI----------DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPA  446 (520)
Q Consensus       381 L~~~G----~~v~~~gt~~~~~~vd~~~~g~----------~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~  446 (520)
                      |.+.+    +..+.+  ...++.+++.....          ....+.+.|.+.||.+..    .     + +.|||+.+.
T Consensus       366 L~~l~~~~~v~~v~~--~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~----~-----g-~~iRi~p~l  433 (476)
T 3i5t_A          366 LASLRDLPGVAETRS--VGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRP----L-----G-DLCVISPPL  433 (476)
T ss_dssp             HHTTTTSTTEEEEEE--ETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEE----E-----T-TEEEECCCT
T ss_pred             HHHHhcCCCeEEEEe--cCceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEe----c-----C-CEEEEECCC
Confidence            87532    222221  12345566643211          034566777788999843    1     2 689998664


Q ss_pred             ccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          447 MTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       447 ~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      .    .+++|++++.+.|+++++..
T Consensus       434 ~----~t~e~i~~~l~~l~~~l~~~  454 (476)
T 3i5t_A          434 I----ISRAQIDEMVAIMRQAITEV  454 (476)
T ss_dssp             T----CCHHHHHHHHHHHHHHHHHH
T ss_pred             C----CCHHHHHHHHHHHHHHHHHH
Confidence            4    45899999999999998754

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.76  E-value=4.6e-16  Score=164.36  Aligned_cols=319  Identities=12%  Similarity=0.033  Sum_probs=180.5

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC---
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---  181 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~---  181 (520)
                      .+|.|.+|+...+... ..+++ .  ....+...+    ..++++++++...+.   .+..+||++|+..++.++.+   
T Consensus        61 ~~p~v~~A~~~~~~~~-~~~~~-~--~~~~~~~~~----la~~l~~~~~~~~~~---v~~~~sGseA~~~al~~~~~~~~  129 (448)
T 3dod_A           61 RKKELDDAIKKQLGKI-AHSTL-L--GMTNVPATQ----LAETLIDISPKKLTR---VFYSDSGAEAMEIALKMAFQYWK  129 (448)
T ss_dssp             SCHHHHHHHHHHHTTC-SCCCC-S--SSEEHHHHH----HHHHHHHHSCTTEEE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhc-cCccc-c--ccCCHHHHH----HHHHHHHhCCCCCCE---EEEeCchHHHHHHHHHHHHHHHH
Confidence            4799999998877542 11111 1  112232333    337888888765542   23456788999999988765   


Q ss_pred             -CC----CEEEEcCCCCCccccccccccccccccccce----------EEEEEcccCCCCCC-----------CCHHHHH
Q 010008          182 -PH----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY----------FESMPYRLDESTGL-----------VDYDMLE  235 (520)
Q Consensus       182 -pG----D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~----------~~~v~~~~d~~~~~-----------iD~d~le  235 (520)
                       +|    |+|++.++.|.|.....       ....+..          .....++.+ ..+.           .|+++|+
T Consensus       130 ~~G~~~~~~vi~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~le  201 (448)
T 3dod_A          130 NIGKPEKQKFIAMKNGYHGDTIGA-------VSVGSIELFHHVYGPLMFESYKAPIP-YVYRSESGDPDECRDQCLRELA  201 (448)
T ss_dssp             HTTCTTCCEEEEEC------------------------------------CEEECCC-CCTTSSSCCHHHHHHHHHHHHH
T ss_pred             hhCCCCCCEEEEECCCCCCccHHH-------HHhcCCccccccccCCCCCceEeCCC-ccccCCccchhhhhHHHHHHHH
Confidence             55    99999998874432111       1111110          011122211 1111           2588999


Q ss_pred             HHhh--hcCCcEEEEcCCC--CCC-CCC----HHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEecc
Q 010008          236 KTAI--LFRPKLIIAGASA--YPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTT  303 (520)
Q Consensus       236 ~~i~--~~~pklIi~~~s~--~p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S~  303 (520)
                      ++++  ..++++|++...+  +++ ..+    +++|+++|++||++||+|++|. |+...+.. . ..+. ..|++++  
T Consensus       202 ~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~-g~g~~g~~~a~~~~~~~~di~t~--  278 (448)
T 3dod_A          202 QLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVAT-GFGRTGKMFACEHENVQPDLMAA--  278 (448)
T ss_dssp             HHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEE--
T ss_pred             HHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEecccc-CCCcccchhhhhhcCCCCCEEEe--
Confidence            9887  2256778777543  333 333    8999999999999999999975 43322211 0 0011 2567654  


Q ss_pred             CcccC-CC-CceEEEeeCCCcchhhHHHhhcc-------cCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010008          304 HKSLR-GP-RGGMIFFKKDPVLGVELESAINN-------AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNC  374 (520)
Q Consensus       304 hK~l~-Gp-rgG~I~~~~~~~~~~~l~~~i~~-------~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na  374 (520)
                      +|++. |+ |.|++++++      ++.+.+..       ....+..+++.. ..++...+|+.+..+   ++.+++.++.
T Consensus       279 sK~l~~G~~~ig~v~~~~------~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~aaa~aal~~~~~~---~~~~~~~~~~  348 (448)
T 3dod_A          279 GKGITGGYLPIAVTFATE------DIYKAFYDDYENLKTFFHGHSYTGNQL-GCAVALENLALFESE---NIVEQVAEKS  348 (448)
T ss_dssp             CGGGGTTSSCCEEEEEEH------HHHHTTCSCGGGCCCCCCCCTTTTCHH-HHHHHHHHHHHHHHT---THHHHHHHHH
T ss_pred             cccccCCcCceEEEEECH------HHHHHhhhccccCCcccccCCCCcCHH-HHHHHHHHHHHHhcc---cHHHHHHHHH
Confidence            59984 53 889999988      77777654       222222333333 333333467654332   3355566666


Q ss_pred             HHHHHHHHH-CCC---EEecCCCCCeeEEEEecCCCCC----------HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEE
Q 010008          375 RALASRLVE-LGY---KLVSGGSDNHLVLVDLRPMGID----------GARVEKILDMASITLNKNSVPGDKSALVPGGI  440 (520)
Q Consensus       375 ~~l~~~L~~-~G~---~v~~~gt~~~~~~vd~~~~g~~----------~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~gi  440 (520)
                      +++.+.|.+ .++   ..+.+  ...++++++.....+          ...+.+.|.+.||.+.    |+      .+.|
T Consensus       349 ~~~~~~l~~l~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~----~~------~~~i  416 (448)
T 3dod_A          349 KKLHFLLQDLHALPHVGDIRQ--LGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTR----PL------GDVI  416 (448)
T ss_dssp             HHHHHHHHHHTTSTTEEEEEE--ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECC----EE------TTEE
T ss_pred             HHHHHHHHHHhcCCCeEEEEe--eeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEe----cc------CCEE
Confidence            666666655 122   22221  123556666432111          3567777888899983    32      2689


Q ss_pred             EEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          441 RIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       441 Rig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      ||+.+..    .+++|++++.+.|+++++..
T Consensus       417 Ri~~~~~----~t~e~i~~~l~~l~~~l~~~  443 (448)
T 3dod_A          417 AFLPPLA----STAEELSEMVAIMKQAIHEV  443 (448)
T ss_dssp             EECCCTT----CCHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCC----CCHHHHHHHHHHHHHHHHHH
Confidence            9976543    45899999999999988643

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.76  E-value=1.6e-15  Score=158.95  Aligned_cols=317  Identities=14%  Similarity=0.063  Sum_probs=184.5

Q ss_pred             cceEecCC--C---CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH
Q 010008           95 SLELIASE--N---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS  169 (520)
Q Consensus        95 ~i~Liase--n---~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs  169 (520)
                      .|++..+.  +   ..+|.|.+|+...+......++       ..+...    ...++++++++ ++++   .+..++|+
T Consensus        54 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-------~~~~~~----~la~~l~~~~~-~~~~---v~~~~ggs  118 (427)
T 3fq8_A           54 YIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGA-------PCALEN----VLAEMVNDAVP-SIEM---VRFVNSGT  118 (427)
T ss_dssp             EEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCSS-------CCHHHH----HHHHHHHHHST-TCSE---EEEESSHH
T ss_pred             EEECCCchhhhccCCCCHHHHHHHHHHHHhCCCcCC-------CCHHHH----HHHHHHHHhCC-CCCE---EEEeCCHH
Confidence            46665542  2   2589999999887754311111       122222    33467888887 4442   24456777


Q ss_pred             HHHHHHHHhh--CCCCCEEEEcCCCCCccccccccccccccccccceE-----------------EEEEcccCCCCCCCC
Q 010008          170 PANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYF-----------------ESMPYRLDESTGLVD  230 (520)
Q Consensus       170 ~A~~~~l~al--l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~-----------------~~v~~~~d~~~~~iD  230 (520)
                      +|+.+++...  ...+|+|+++++.|.|.....       ....+...                 .++.++.      -|
T Consensus       119 ea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d  185 (427)
T 3fq8_A          119 EACMAVLRIMRAYTGRDKIIKFEGCYHGHADMF-------LVKAGSGVATLGLPSSPGVPKKTTANTLTTPY------ND  185 (427)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGG-------CSSCCTHHHHHTCCSCSSSCHHHHTTEEEEET------TC
T ss_pred             HHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHH-------HHhcCCcccccCCCCCCCCCCcccCceeecCC------CC
Confidence            9999888432  124588998888765432111       01111100                 0111111      18


Q ss_pred             HHHHHHHhhhc--CCcEEEEcCCCCCC--CCC----HHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEE
Q 010008          231 YDMLEKTAILF--RPKLIIAGASAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVV  299 (520)
Q Consensus       231 ~d~le~~i~~~--~pklIi~~~s~~p~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv  299 (520)
                      +++|+++++++  ++++|++..+++++  ..+    +++|+++|++||++||+|++|. |+ ..+...  .... ..|++
T Consensus       186 ~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-g~-~~g~~~~~~~~~~~~di~  263 (427)
T 3fq8_A          186 LEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVIT-GF-RIAYGGVQEKFGVTPDLT  263 (427)
T ss_dssp             HHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-BT-TTBTTHHHHHTTCCCSEE
T ss_pred             HHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-cc-ccCcchhhHhcCCCCChh
Confidence            99999999764  56788887554433  556    9999999999999999999975 55 322110  0011 25766


Q ss_pred             EeccCccc-CCCCceEEEeeCCCcchhhHHHhhccc---CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q 010008          300 TTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNA---VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCR  375 (520)
Q Consensus       300 ~~S~hK~l-~GprgG~I~~~~~~~~~~~l~~~i~~~---~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~  375 (520)
                      ++  +|++ +|.|.|++++++      ++.+.+...   ...+..++ +...+++...+++.+..+   ++.+++.++.+
T Consensus       264 t~--sK~~~~G~~~G~~~~~~------~~~~~~~~~~~~~~~~t~~~-~~~~~aa~~aal~~~~~~---~~~~~~~~~~~  331 (427)
T 3fq8_A          264 TL--GKIIGGGLPVGAYGGKR------EIMQLVAPAGPMYQAGTLSG-NPLAMTAGIKTLELLRQP---GTYEYLDQITK  331 (427)
T ss_dssp             EE--CGGGGTTSSCEEEEECH------HHHTTBTTTSSBCCCCTTTT-CHHHHHHHHHHHHHHTST---THHHHHHHHHH
T ss_pred             hh--hhhhhCCcceEEEEEcH------HHHHhhccCCCccccCCCCc-CHHHHHHHHHHHHHHHhc---CHHHHHHHHHH
Confidence            54  5998 567889999987      677766532   11111222 334444444567765443   34566666677


Q ss_pred             HHHHHHHH----CCCEEecCCCCCeeEEEEecCCCCC------------HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCE
Q 010008          376 ALASRLVE----LGYKLVSGGSDNHLVLVDLRPMGID------------GARVEKILDMASITLNKNSVPGDKSALVPGG  439 (520)
Q Consensus       376 ~l~~~L~~----~G~~v~~~gt~~~~~~vd~~~~g~~------------~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~g  439 (520)
                      .+.+.|.+    .++.....+ ...++++++....+.            ...+.+.|.+.||.+..    +.     ...
T Consensus       332 ~~~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~----~~-----~~r  401 (427)
T 3fq8_A          332 RLSDGLLAIAQETGHAACGGQ-VSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAP----SQ-----FEA  401 (427)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEE-ETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCS----ST-----TSC
T ss_pred             HHHHHHHHHHHhCCCCeEEEE-eeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEec----CC-----CCC
Confidence            77777655    233221111 234556666432222            34577778889999843    21     123


Q ss_pred             EEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          440 IRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       440 iRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +|++  .    ..+++|++++.+.|+++++
T Consensus       402 ~~~~--~----~~t~e~i~~~l~~l~~~l~  425 (427)
T 3fq8_A          402 GFTS--L----AHTEEDIDATLAAARTVMS  425 (427)
T ss_dssp             EECC--T----TCCHHHHHHHHHHHHHHHH
T ss_pred             EEee--C----cCCHHHHHHHHHHHHHHHH
Confidence            4543  2    2468999999999998875

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.76  E-value=2.1e-16  Score=167.59  Aligned_cols=327  Identities=11%  Similarity=0.014  Sum_probs=185.9

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC---
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---  181 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~---  181 (520)
                      .+|.|.+|+...+.+.. .+++..+|  ..+...    ..+++++++++.+.++   .+..++|++|+..++.++.+   
T Consensus        67 ~~p~v~~A~~~~~~~~~-~~~~~~~~--~~~~~~----~la~~l~~~~~~~~~~---v~~~~ggseA~~~al~~~~~~~~  136 (459)
T 4a6r_A           67 GRKDFAEAARRQMEELP-FYNTFFKT--THPAVV----ELSSLLAEVTPAGFDR---VFYTNSGSESVDTMIRMVRRYWD  136 (459)
T ss_dssp             CCHHHHHHHHHHHHHCS-CCCTTSSS--CCHHHH----HHHHHHHHHSCTTCCE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcc-cccccccc--CCHHHH----HHHHHHHHhCCCCCCE---EEEeCchHHHHHHHHHHHHHHHH
Confidence            47999999988775421 12222111  122222    3347888999877653   23345677999999988865   


Q ss_pred             -----CCCEEEEcCCCCCccccc-----cccccccccccccceEEEEEccc--CCCCCCCC--------HHHHHHHhhh-
Q 010008          182 -----PHDRIMGLDLPHGGHLSH-----GFMTPKRRVSGTSIYFESMPYRL--DESTGLVD--------YDMLEKTAIL-  240 (520)
Q Consensus       182 -----pGD~Vl~~~~~~~ghls~-----g~~~~~~~v~~~g~~~~~v~~~~--d~~~~~iD--------~d~le~~i~~-  240 (520)
                           ++|+|++.++.|.|....     +...+..........+..++++.  +..++ +|        +++|+++++. 
T Consensus       137 ~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~  215 (459)
T 4a6r_A          137 VQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEI  215 (459)
T ss_dssp             HTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHc
Confidence                 579999999887543210     00000000000011123333222  10112 45        7889988874 


Q ss_pred             --cCCcEEEEcCCCCCC--CCC----HHHHHHHHHHhCCEEEEechhhcccccccccC-CC-CC-cccEEEeccCcccCC
Q 010008          241 --FRPKLIIAGASAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA-DP-FK-YCDVVTTTTHKSLRG  309 (520)
Q Consensus       241 --~~pklIi~~~s~~p~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~-~p-~~-~aDiv~~S~hK~l~G  309 (520)
                        .++++|++...++++  ..+    +++|+++|+++|++||+|++|. |+...+... .. +. ..|++++  +|+|+|
T Consensus       216 ~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~pdi~t~--sK~l~g  292 (459)
T 4a6r_A          216 GADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVIC-GFGRTGEWFGHQHFGFQPDLFTA--AKGLSS  292 (459)
T ss_dssp             CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEEEE--CGGGGT
T ss_pred             CCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcccccchHhhcCCCCCeeeh--hhhhcC
Confidence              256777776544332  344    8999999999999999999964 443222110 00 01 3577765  599865


Q ss_pred             --CCceEEEeeCCCcchhhHHHhhcc---cCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHH-HHHHHHHHHH-H
Q 010008          310 --PRGGMIFFKKDPVLGVELESAINN---AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVV-SNCRALASRL-V  382 (520)
Q Consensus       310 --prgG~I~~~~~~~~~~~l~~~i~~---~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~-~na~~l~~~L-~  382 (520)
                        +|.|++++++      ++.+.+..   ....+..+++.....+++ .+|+.+..++   +.+++. ++.+++.+.| .
T Consensus       293 g~~~lg~v~~~~------~i~~~~~~~~~~~~~~t~~~~~~~~aaa~-aal~~~~~~~---~~~~~~~~~~~~~~~~l~~  362 (459)
T 4a6r_A          293 GYLPIGAVFVGK------RVAEGLIAGGDFNHGFTYSGHPVCAAVAH-ANVAALRDEG---IVQRVKDDIGPYMQKRWRE  362 (459)
T ss_dssp             TSSCCEEEEECH------HHHHHHHHHCTTHHHHHHCSCHHHHHHHH-HHHHHHHHTC---HHHHHHHTHHHHHHHHHHH
T ss_pred             CCCCccceeeCH------HHHHHhhcCCCcccCCCCCCCHHHHHHHH-HHHHHHhcch---HHHHHHHHHHHHHHHHHHH
Confidence              7889999987      67666642   111111233333333333 3566543333   344555 5556666666 3


Q ss_pred             H---C-CCEEecCCCCCeeEEEEecCCCCC----------HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCcc
Q 010008          383 E---L-GYKLVSGGSDNHLVLVDLRPMGID----------GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMT  448 (520)
Q Consensus       383 ~---~-G~~v~~~gt~~~~~~vd~~~~g~~----------~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~t  448 (520)
                      .   . ++..+.+  ...++.+++.....+          ...+.+.|.+.||.+.    |+      .+.+||+.+.. 
T Consensus       363 ~l~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~------g~~iRi~~~~~-  429 (459)
T 4a6r_A          363 TFSRFEHVDDVRG--VGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMR----AC------GDHIVSAPPLV-  429 (459)
T ss_dssp             HHTTCTTEEEEEE--ETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECE----EE------TTEEEECCCTT-
T ss_pred             HHhcCCCeEEEEE--EEEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEe----cC------CCEEEEECCCC-
Confidence            2   2 2222222  123455555421111          4557777888899984    32      16899987644 


Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHH
Q 010008          449 TRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       449 t~g~~~~d~~~la~~i~~~l~~~  471 (520)
                         .+++|++++.+.|+++++..
T Consensus       430 ---~t~e~i~~~l~~l~~~l~~~  449 (459)
T 4a6r_A          430 ---MTRAEVDEMLAVAERCLEEF  449 (459)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCHHHHHHHHHHHHHHHHHH
Confidence               35899999999999988754

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.75  E-value=4.5e-16  Score=163.36  Aligned_cols=321  Identities=14%  Similarity=0.093  Sum_probs=186.8

Q ss_pred             ccceEecCC--C---CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh
Q 010008           94 KSLELIASE--N---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG  168 (520)
Q Consensus        94 ~~i~Liase--n---~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG  168 (520)
                      ..|++.++-  |   ..+|.|.+|+...+.+....+||       .+...++    +++++++++ ..++   .+..+||
T Consensus        54 ~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~-------~~~~~~l----~~~la~~~~-~~~~---v~~~~~G  118 (429)
T 3k28_A           54 EYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAP-------TEIENKL----AKLVIERVP-SIEI---VRMVNSG  118 (429)
T ss_dssp             EEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCCSSC-------CHHHHHH----HHHHHHHST-TCSE---EEEESSH
T ss_pred             EEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCcCCC-------CHHHHHH----HHHHHHhCC-CCCE---EEEeCCh
Confidence            346665542  2   25899999998887653322232       2222333    357788886 3432   2345678


Q ss_pred             HHHHHHHHHhhCC--CCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCC-------------CCHHH
Q 010008          169 SPANFEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL-------------VDYDM  233 (520)
Q Consensus       169 s~A~~~~l~all~--pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~-------------iD~d~  233 (520)
                      ++|+..++..+..  ++|+|++.++.|.|.....       ....|.......++.  ..+.             -|+++
T Consensus       119 sea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~-------~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~  189 (429)
T 3k28_A          119 TEATMSALRLARGYTGRNKILKFIGCYHGHGDSL-------LIKAGSGVATLGLPD--SPGVPEGVAKNTITVAYNDLES  189 (429)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGG-------CSSCCTTC-----CC--CTTCCHHHHTTEEEEETTCHHH
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHH-------HHhcCCcccccCCCC--cCCCCCcccCceeecCCCCHHH
Confidence            8999998877643  6789999888764432111       111121111111110  0111             18999


Q ss_pred             HHHHhhhc--CCcEEEEcCCCCCC--CCC----HHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEec
Q 010008          234 LEKTAILF--RPKLIIAGASAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTT  302 (520)
Q Consensus       234 le~~i~~~--~pklIi~~~s~~p~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S  302 (520)
                      ++++++.+  ++++|++..+++++  ..+    +++|+++|++||++||+|++| .|+ ..+...  ..+. ..|+++  
T Consensus       190 le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~-~g~-~~g~~~~~~~~~~~~di~t--  265 (429)
T 3k28_A          190 VKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVM-TGF-RVAYNCGQGYYGVTPDLTC--  265 (429)
T ss_dssp             HHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTT-TTT-TSSTTHHHHHHTCCCSEEE--
T ss_pred             HHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-ccc-ccCcchHHHHhCCCCceeh--
Confidence            99988742  56777777544332  455    899999999999999999997 454 322110  0001 246665  


Q ss_pred             cCccc-CCCCceEEEeeCCCcchhhHHHhhccc--CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 010008          303 THKSL-RGPRGGMIFFKKDPVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALAS  379 (520)
Q Consensus       303 ~hK~l-~GprgG~I~~~~~~~~~~~l~~~i~~~--~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~  379 (520)
                      ++|++ .|+|.|++++++      ++.+.+...  .+.+...+.+....++..++++...    ++..+++.++++++.+
T Consensus       266 ~sK~~~~G~~iG~~~~~~------~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~----~~~~~~~~~~~~~l~~  335 (429)
T 3k28_A          266 LGKVIGGGLPVGAYGGKA------EIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT----PESYVEFERKAEMLEA  335 (429)
T ss_dssp             ECGGGGTTSCCEEEEECH------HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC----HHHHHHHHHHHHHHHH
T ss_pred             hhhhhcCCCCeEEEEEcH------HHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            55998 457889999987      677666432  1111111223333333334566432    5677888888888888


Q ss_pred             HHHHC----CC-EEecCCCCCeeEEEEecCCCC---------C---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEE
Q 010008          380 RLVEL----GY-KLVSGGSDNHLVLVDLRPMGI---------D---GARVEKILDMASITLNKNSVPGDKSALVPGGIRI  442 (520)
Q Consensus       380 ~L~~~----G~-~v~~~gt~~~~~~vd~~~~g~---------~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRi  442 (520)
                      .|.+.    ++ ..+.+  ...++++.+.....         +   ...+.+.|.+.||.+.    |+     ..+.+|+
T Consensus       336 ~L~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~-----~~~~~r~  404 (429)
T 3k28_A          336 GLRKAAEKHGIPHHINR--AGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLP----PS-----QFEGLFL  404 (429)
T ss_dssp             HHHHHHHHTTCCCEEEE--ETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECC----SS-----TTSCBCC
T ss_pred             HHHHHHhhCCCCEEEEe--eccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEe----cC-----CCCCEEE
Confidence            88662    22 12221  12345555432111         1   2556677888999984    32     2346787


Q ss_pred             ccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          443 GSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       443 g~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ++      ..+++|++++.+.|+++++
T Consensus       405 ~~------~~t~e~i~~~l~~l~~~l~  425 (429)
T 3k28_A          405 ST------VHSDADIEATIAAAEIAMS  425 (429)
T ss_dssp             CT------TCCHHHHHHHHHHHHHHHH
T ss_pred             EC------CCCHHHHHHHHHHHHHHHH
Confidence            53      2568999999999998875

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.74  E-value=2.3e-18  Score=180.17  Aligned_cols=312  Identities=8%  Similarity=0.058  Sum_probs=180.8

Q ss_pred             chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC----CCCEEEEcCCCCCccccccccccccccc
Q 010008          134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK----PHDRIMGLDLPHGGHLSHGFMTPKRRVS  209 (520)
Q Consensus       134 ~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~----pGD~Vl~~~~~~~ghls~g~~~~~~~v~  209 (520)
                      .+..-.+|+....++.+++|++... . -+.++.+|.++.+++++.++    +||.|+++...|.+.+        +.+.
T Consensus        93 ~~~~~~~e~~~~~~~~~~lGlp~~~-~-~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~--------kAl~  162 (450)
T 3bc8_A           93 SSLLNKITNSLVLNVIKLAGVHSVA-S-CFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF--------KSMV  162 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTCC-E-EEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH--------HHHH
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCc-e-EEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHH--------HHHH
Confidence            3445577878888999999997542 1 13334444344434444434    3899998876553332        3556


Q ss_pred             cccceEEEEEcccCCCCCCCCHHHHHHHhhhcC--CcEEEEc-CCCCC--CCCCHHHHHHHHHHhCCEEEEechhhcccc
Q 010008          210 GTSIYFESMPYRLDESTGLVDYDMLEKTAILFR--PKLIIAG-ASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLV  284 (520)
Q Consensus       210 ~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~--pklIi~~-~s~~p--~~~d~~~i~~ia~~~g~~li~D~Ah~~gli  284 (520)
                      +.|.....+....+.+.+.+|+++|+++++++.  .+.+++. .+.|+  ...|+++|+++|+++|++|++|+||.+.+.
T Consensus       163 l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~  242 (450)
T 3bc8_A          163 TAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSS  242 (450)
T ss_dssp             HTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCH
T ss_pred             HcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhh
Confidence            677643333322223467899999999998754  2344444 44454  378999999999999999999999875433


Q ss_pred             cccccC-CCC--CcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhcccCCCCCCC-CChHHHHHHHHHHHHHhc
Q 010008          285 AASVVA-DPF--KYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQG-GPHNHTIGGLAVCLKHAQ  359 (520)
Q Consensus       285 ~~~~~~-~p~--~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~~~~~p~~~g-~p~~~~iaala~al~~~~  359 (520)
                      .....+ ..+  +++|+++.|+|||+..|-+ ++++++++     ++.+++.. .+++.+. +|.    ..++.++....
T Consensus       243 ~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~-----~~~~~~~~-~~~g~~s~Sps----L~l~~~l~~~G  312 (450)
T 3bc8_A          243 KCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNE-----PFIQDISK-MYPGRASASPS----LDVLITLLSLG  312 (450)
T ss_dssp             HHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCH-----HHHHHHHH-HSCSCBCSHHH----HHHHHHHHHHH
T ss_pred             hhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCH-----HHHHHHHH-HhhcCCcccHH----HHHHHHHHHHH
Confidence            211111 223  4799999999999998876 56665653     55555543 2444332 222    22333343333


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHH-C---CCEEecCCCCCee-EEEEecCC----CCCHHHHHHHHhhcC---eEEcCC-
Q 010008          360 SPEFKVYQNKVVSNCRALASRLVE-L---GYKLVSGGSDNHL-VLVDLRPM----GIDGARVEKILDMAS---ITLNKN-  426 (520)
Q Consensus       360 ~~~~~~~~~~i~~na~~l~~~L~~-~---G~~v~~~gt~~~~-~~vd~~~~----g~~~~~~~~~L~~~g---I~v~~~-  426 (520)
                      ..+|.+..++..++++++.+.|.+ .   |++++... .+.. ..+.+...    ..+...+--.+...|   ..+... 
T Consensus       313 ~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~-~~~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~~v~~~~  391 (450)
T 3bc8_A          313 CSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTP-HNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLG  391 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCT-TCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCc-cCCCcceeecccccccccCCCceeEEEecCCCCccceeeecc
Confidence            345677777778889999998866 3   77776421 1111 12222211    123333333333333   222100 


Q ss_pred             --------CCC--C-CCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          427 --------SVP--G-DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       427 --------~~P--g-~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                              .+.  | ...-....+|=+    +++.|.+++|++++.+.+++++..
T Consensus       392 ~~~~~~~~~l~~~gi~~E~~~~~~i~~----~~sig~~~~di~~l~~~L~~~~~~  442 (450)
T 3bc8_A          392 NVQTVSGHTFRGFMSHADNYPCAYLNA----AAAIGMKMQDVDLFIKRLDKCLNI  442 (450)
T ss_dssp             CEEEETTEEEETTTTTSSCCSSCEEEE----ECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHcCCeeecCCCCcEEE----EecCCCCHHHHHHHHHHHHHHHHH
Confidence                    000  0 000111233333    455788999999999999998654

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.74  E-value=2e-16  Score=166.29  Aligned_cols=325  Identities=15%  Similarity=0.132  Sum_probs=189.3

Q ss_pred             ccceEecCC--C---CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh
Q 010008           94 KSLELIASE--N---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG  168 (520)
Q Consensus        94 ~~i~Liase--n---~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG  168 (520)
                      ..|++..+.  +   +.+|.|.+++...+.+....+|+       .+...+    .+++++++++ ..++   .+..+||
T Consensus        57 ~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~-------~~~~~~----l~~~la~~~~-~~~~---v~~~~sg  121 (434)
T 2epj_A           57 RIVDLVLAYGPLILGHKHPRVLEAVEEALARGWLYGAP-------GEAEVL----LAEKILGYVK-RGGM---IRFVNSG  121 (434)
T ss_dssp             EEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSCCSSC-------CHHHHH----HHHHHHHHHC-TTCE---EEEESSH
T ss_pred             EEEEcccchhcccCCCCCHHHHHHHHHHHHhCCCCCCC-------CHHHHH----HHHHHHHhCC-CCCE---EEEeCCH
Confidence            346665543  2   25799999998887653211221       222333    3467888884 3332   2345677


Q ss_pred             HHHHHHHHHhh--CCCCCEEEEcCCCCCccccccccccccc------cccccce----EEEEEcccCCCCCCCCHHHHHH
Q 010008          169 SPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRR------VSGTSIY----FESMPYRLDESTGLVDYDMLEK  236 (520)
Q Consensus       169 s~A~~~~l~al--l~pGD~Vl~~~~~~~ghls~g~~~~~~~------v~~~g~~----~~~v~~~~d~~~~~iD~d~le~  236 (520)
                      ++|+.+++.+.  +.++|+|+++++.|.|............      ....|..    .+++.++.      .|+++|++
T Consensus       122 seA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~------~d~~~le~  195 (434)
T 2epj_A          122 TEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY------NDVEALER  195 (434)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET------TCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC------CCHHHHHH
Confidence            89999988861  3356788888887654321110000000      0001110    01222221      38999999


Q ss_pred             Hhhhc--CCcEEEEcCCCCC-C-CCC----HHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEeccCc
Q 010008          237 TAILF--RPKLIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHK  305 (520)
Q Consensus       237 ~i~~~--~pklIi~~~s~~p-~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S~hK  305 (520)
                      ++++.  ++++|++...+++ + ..+    +++|+++|+++|++||+|++|. |+ ..+.. . ..+. ..|++  |++|
T Consensus       196 ~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~-~~g~~~~~~~~~~~~di~--s~sK  271 (434)
T 2epj_A          196 VFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GF-RLGLEGAQGYFNIEGDII--VLGK  271 (434)
T ss_dssp             HHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TT-TSSTTHHHHHHTCCCSEE--EEEG
T ss_pred             HHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-ce-eCCcchhhHHhCCCCCee--eecc
Confidence            98742  6778888754443 3 567    9999999999999999999976 65 22210 0 0001 35776  5569


Q ss_pred             ccC-CCCceEEEeeCCCcchhhHHHhhcccC--CC-CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 010008          306 SLR-GPRGGMIFFKKDPVLGVELESAINNAV--FP-GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRL  381 (520)
Q Consensus       306 ~l~-GprgG~I~~~~~~~~~~~l~~~i~~~~--~p-~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L  381 (520)
                      ++. |.++|++++++      ++.+.+....  +. +..++ +...+++...+|+.+.++   ++.+++.++++++.+.|
T Consensus       272 ~l~~G~~~G~v~~~~------~~~~~l~~~~~~~~~~t~~~-~~~~~aa~~a~l~~~~~~---~~~~~~~~~~~~l~~~L  341 (434)
T 2epj_A          272 IIGGGFPVGAVAGSR------EVMSLLTPQGKVFNAGTFNA-HPITMAAGLATLKALEEE---PVYSVSREAAKALEEAA  341 (434)
T ss_dssp             GGGTTSSCEEEEECH------HHHTTBTTTSSBCCCCTTTT-CHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHH
T ss_pred             hhcCCcceeeeeecH------HHHHhhccCCCcccCCCCCc-CHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHH
Confidence            985 46889999987      6766665411  11 12222 333444444466655332   34566777788888887


Q ss_pred             HHC----CCEE-ecCCCCCeeEEEEecCCC------------CCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEcc
Q 010008          382 VEL----GYKL-VSGGSDNHLVLVDLRPMG------------IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS  444 (520)
Q Consensus       382 ~~~----G~~v-~~~gt~~~~~~vd~~~~g------------~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~  444 (520)
                      .+.    ++.. +.+  ...++++++....            .+...+.+.|.+.||.+.    |+.     ...+|++.
T Consensus       342 ~~~~~~~~~~~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~~-----~~~~~~~~  410 (434)
T 2epj_A          342 SEVLDRTGLPYTINR--VESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIA----PSN-----LEAVFTGL  410 (434)
T ss_dssp             HHHHHHHTCCEEEEE--ETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECC----SST-----TSCEECCT
T ss_pred             HHHHhhCCCcEEEEE--eeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEe----ccC-----CCcEEEec
Confidence            653    5532 222  2345677764311            123557777888999984    332     12466542


Q ss_pred             CCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          445 PAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       445 ~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                            ..+++|++++.+.|+++++.
T Consensus       411 ------~~t~e~i~~~l~~l~~~l~~  430 (434)
T 2epj_A          411 ------PHQGEALEIAVEGLRSSLKT  430 (434)
T ss_dssp             ------TCSHHHHHHHHHHHHHHHHH
T ss_pred             ------cCCHHHHHHHHHHHHHHHHH
Confidence                  25689999999999988764

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.74  E-value=6.4e-16  Score=163.67  Aligned_cols=328  Identities=13%  Similarity=0.027  Sum_probs=183.4

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC-CCCCceeeecCChHHHHHHHHHhhC--C
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAIL--K  181 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~-~~~~~~~V~~~sGs~A~~~~l~all--~  181 (520)
                      .+|.|.+|+...+.... . |....|.  .+...    ..+++++++++.+ .++   .+..+||++|+.+++..+.  .
T Consensus        81 ~~p~v~~A~~~~~~~~~-~-~~~~~~~--~~~~~----~la~~l~~~~~~~~~~~---v~~~~sGseA~~~alk~a~~~~  149 (453)
T 4ffc_A           81 SHPAVAAAIADQATHFT-H-TCFMVTP--YEQYV----QVAELLNALTPGDHDKR---TALFNSGAEAVENAIKVARLAT  149 (453)
T ss_dssp             TCHHHHHHHHHHHHHCS-C-CTTTTSC--CHHHH----HHHHHHHHHSSCSSCEE---EEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcc-c-cccCcCC--CHHHH----HHHHHHHHhCCCCCCcE---EEEeCcHHHHHHHHHHHHHHhc
Confidence            48999999988775431 1 2111111  22222    3347888888754 232   2345678899999986653  2


Q ss_pred             CCCEEEEcCCCCCcccccccc------ccccccccccceEEEEEcccCC-CCCCCC--------HHHHHHHhhhcCCcEE
Q 010008          182 PHDRIMGLDLPHGGHLSHGFM------TPKRRVSGTSIYFESMPYRLDE-STGLVD--------YDMLEKTAILFRPKLI  246 (520)
Q Consensus       182 pGD~Vl~~~~~~~ghls~g~~------~~~~~v~~~g~~~~~v~~~~d~-~~~~iD--------~d~le~~i~~~~pklI  246 (520)
                      .+++|++.++.|.|+......      .+..........+..++++... +....+        .+.|++.+...++.+|
T Consensus       150 g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aav  229 (453)
T 4ffc_A          150 GRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAI  229 (453)
T ss_dssp             CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred             CCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEE
Confidence            458999999877544211000      0000000011122334433211 111222        3566666654344566


Q ss_pred             EEcCCCC-CC-CCC----HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC----cccEEEeccCccc-CCCCceEE
Q 010008          247 IAGASAY-PR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSL-RGPRGGMI  315 (520)
Q Consensus       247 i~~~s~~-p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~----~aDiv~~S~hK~l-~GprgG~I  315 (520)
                      ++...+. ++ ..+    +++|+++|++||++||+|++|. |+...+.. ..+.    ..|++++  +|++ .|+|.|++
T Consensus       230 i~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~g~~g~~-~a~~~~~~~pdi~t~--sK~~~~G~~~G~~  305 (453)
T 4ffc_A          230 IIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQT-GFARTGAW-FASEHEGIVPDIVTM--AKGIAGGMPLSAV  305 (453)
T ss_dssp             EECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSS-STHHHHTCCCSEEEE--CGGGGTTSSCEEE
T ss_pred             EEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCcc-CCCccccc-chhhhcCCCcchHhh--hhhhcCCcCeEEE
Confidence            6653322 22 333    8999999999999999999964 44322211 0111    2466654  5998 56788999


Q ss_pred             EeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH----C-CCEEec
Q 010008          316 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----L-GYKLVS  390 (520)
Q Consensus       316 ~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~----~-G~~v~~  390 (520)
                      ++++      ++.+.+......+..+++...+.+++ ++|+.+..+   ++.+++.++.+++.+.|.+    . ++..+.
T Consensus       306 ~~~~------~i~~~~~~~~~~~t~~~~~~~~aaa~-aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  375 (453)
T 4ffc_A          306 TGRA------ELMDAVYAGGLGGTYGGNPVTCAAAV-AALGVMREL---DLPARARAIEASVTSRLSALAEEVDIIGEVR  375 (453)
T ss_dssp             EEEH------HHHTTSCTTSSCCSSSSCHHHHHHHH-HHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCSSEEEEE
T ss_pred             EECH------HHHhhhcccCcCCCCCcCHHHHHHHH-HHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence            9988      67777665443344444444444444 356654332   3445555566666666654    2 233332


Q ss_pred             CCCCCeeEEEEecC------CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHH
Q 010008          391 GGSDNHLVLVDLRP------MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  464 (520)
Q Consensus       391 ~gt~~~~~~vd~~~------~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i  464 (520)
                      +  ...++++++..      .......+.+.|.+.||.+.    |+..   ..+.+|+..+..    .+++|++++++.|
T Consensus       376 ~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~~~---~~~~iRi~~~~~----~t~e~i~~~l~~l  442 (453)
T 4ffc_A          376 G--RGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLIL----TCGT---FGNVIRLLPPLV----IGDDLLDEGITAL  442 (453)
T ss_dssp             E--ETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECC----EECT---TSCEEEECCCTT----CCHHHHHHHHHHH
T ss_pred             e--eceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEe----cCCC---CCCEEEEECCCC----CCHHHHHHHHHHH
Confidence            2  12455666632      11123457777888999984    3321   236899986644    3589999999999


Q ss_pred             HHHHHH
Q 010008          465 HEGVEI  470 (520)
Q Consensus       465 ~~~l~~  470 (520)
                      +++++.
T Consensus       443 ~~~l~~  448 (453)
T 4ffc_A          443 SDIIRA  448 (453)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.73  E-value=3.4e-16  Score=166.69  Aligned_cols=320  Identities=13%  Similarity=0.026  Sum_probs=189.1

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCC---
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---  181 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~---  181 (520)
                      .+|.|.+|+...+.+. ...+...+|  ..+...+    ..++++++++.+.+.   .+..+||++||..++..+.+   
T Consensus        72 ~~p~v~~A~~~~~~~~-~~~~~~~~~--~~~~~~~----lae~l~~~~~~~~~~---v~~~~sGseA~~~aik~a~~~~~  141 (472)
T 3hmu_A           72 GRDELAEVAARQMREL-PYYNTFFKT--THVPAIA----LAQKLAELAPGDLNH---VFFAGGGSEANDTNIRMVRTYWQ  141 (472)
T ss_dssp             CCHHHHHHHHHHHHHC-SCCCSSSSE--ECHHHHH----HHHHHHHHSCTTEEE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhc-ccccccccc--CCHHHHH----HHHHHHHhCCCCCCE---EEEeCCHHHHHHHHHHHHHHHHH
Confidence            4799999998877542 112222111  1222222    336788888765542   23356788999999988764   


Q ss_pred             -----CCCEEEEcCCCCCcccccccccccccccccc-----------ceEEEEEccc--CCCCCCCC--------HHHHH
Q 010008          182 -----PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS-----------IYFESMPYRL--DESTGLVD--------YDMLE  235 (520)
Q Consensus       182 -----pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g-----------~~~~~v~~~~--d~~~~~iD--------~d~le  235 (520)
                           ++++|++.++.|.|... +      .....+           ..+..++++.  +..++ .|        +++|+
T Consensus       142 ~~g~~~~~~ii~~~~~yHg~t~-~------~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le  213 (472)
T 3hmu_A          142 NKGQPEKTVIISRKNAYHGSTV-A------SSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELE  213 (472)
T ss_dssp             HTTCTTCCEEEEETTCCCCSSH-H------HHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHH
T ss_pred             hcCCCCCCEEEEEcCcCCCccH-H------hhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHH
Confidence                 46899999987644311 1      011111           0123333322  10112 34        78888


Q ss_pred             HHhhh---cCCcEEEEcCCCCCC--CCC----HHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEecc
Q 010008          236 KTAIL---FRPKLIIAGASAYPR--DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTT  303 (520)
Q Consensus       236 ~~i~~---~~pklIi~~~s~~p~--~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S~  303 (520)
                      ++++.   .++++|++...++++  ..+    +++|+++|+++|++||+|++|. |+...|...  ..+. ..|++++| 
T Consensus       214 ~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~a~~~~~v~pdi~t~s-  291 (472)
T 3hmu_A          214 EAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVIC-GFGRTGNWFGTQTMGIRPHIMTIA-  291 (472)
T ss_dssp             HHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSCHHHHHTCCCSEEEEC-
T ss_pred             HHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-CCcccCccchhHHhCCCCceeeec-
Confidence            88863   256778887544433  444    8999999999999999999964 443222100  0001 35787654 


Q ss_pred             CcccCC--CCceEEEeeCCCcchhhHHHhhccc--CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHH-HHHHHHH
Q 010008          304 HKSLRG--PRGGMIFFKKDPVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVV-SNCRALA  378 (520)
Q Consensus       304 hK~l~G--prgG~I~~~~~~~~~~~l~~~i~~~--~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~-~na~~l~  378 (520)
                       |+|+|  ++.|++++++      ++.+.++..  ...+..+++.....|++ ++|+.+..+   ++.+++. ++.+++.
T Consensus       292 -K~l~gg~~plG~v~~~~------~i~~~~~~~~~~~~~t~~~np~a~aAa~-aaL~~~~~~---~~~~~~~~~~~~~l~  360 (472)
T 3hmu_A          292 -KGLSSGYAPIGGSIVCD------EVAHVIGKDEFNHGYTYSGHPVAAAVAL-ENLRILEEE---NILDHVRNVAAPYLK  360 (472)
T ss_dssp             -GGGTTTSSCCEEEEEEH------HHHHHHTTSCBCCCCTTTTCHHHHHHHH-HHHHHHHHT---THHHHHHHTHHHHHH
T ss_pred             -hhhhcCCcceEEEEECH------HHHHhcccCCccccCCCCCCHHHHHHHH-HHHHHHHHh---HHHHHHHHHHHHHHH
Confidence             99966  7889999988      677776322  11222334334333443 467655332   3456666 7777888


Q ss_pred             HHHHHC----CCEEecCCCCCeeEEEEecCCCC-------C----HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEc
Q 010008          379 SRLVEL----GYKLVSGGSDNHLVLVDLRPMGI-------D----GARVEKILDMASITLNKNSVPGDKSALVPGGIRIG  443 (520)
Q Consensus       379 ~~L~~~----G~~v~~~gt~~~~~~vd~~~~g~-------~----~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig  443 (520)
                      +.|++.    ++..+.+  ...++.+++.....       +    ...+.+.|.+.||.+..    +     + +.|||+
T Consensus       361 ~~L~~l~~~~~v~~vr~--~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~----~-----g-~~iRi~  428 (472)
T 3hmu_A          361 EKWEALTDHPLVGEAKI--VGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRH----V-----G-DRMIIS  428 (472)
T ss_dssp             HHHHGGGGSTTEEEEEE--ETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEE----E-----T-TEEEEC
T ss_pred             HHHHHHhcCCCeEEEEe--cCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEe----c-----C-CEEEEE
Confidence            888653    1222222  12345566542110       0    34577778888998842    2     1 689998


Q ss_pred             cCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          444 SPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       444 ~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      .+..    .+++|++++++.|+++++..
T Consensus       429 p~~~----~t~e~i~~~l~~l~~~l~~~  452 (472)
T 3hmu_A          429 PPLV----ITPAEIDEMFVRIRKSLDEA  452 (472)
T ss_dssp             CCTT----CCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCC----CCHHHHHHHHHHHHHHHHHH
Confidence            6644    45899999999999988654

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.73  E-value=3.5e-16  Score=165.43  Aligned_cols=313  Identities=13%  Similarity=0.087  Sum_probs=185.0

Q ss_pred             ChHHHH-H-HHhh---hhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC-CCCCCCceeeecCChHHHHHHHHHh
Q 010008          105 TSRAVM-E-AVGS---CLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN-LDENKWGVNVQPLSGSPANFEVYTA  178 (520)
Q Consensus       105 ~~~~V~-e-a~~s---~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg-~~~~~~~~~V~~~sGs~A~~~~l~a  178 (520)
                      .+|.|. + |+..   .+... .. +. .+|.  .+...++    .++++++++ .+.++   .+...||++||..++.+
T Consensus        71 ~~p~v~~~~A~~~~~~~~~~~-~~-~~-~~~~--~~~~~~l----a~~la~~~~~~~~~~---v~~~~~gseA~~~aik~  138 (449)
T 2cjg_A           71 NPPALVDDREFHAELMQAALN-KP-SN-SDVY--SVAMARF----VETFARVLGDPALPH---LFFVEGGALAVENALKA  138 (449)
T ss_dssp             SCHHHHTCHHHHHHHHHHHTC-CC-CT-TTCC--CHHHHHH----HHHHHHHHCCTTCCE---EEEESSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhc-CC-CC-cccC--CHHHHHH----HHHHHHhcCCCCCCE---EEEeCchHHHHHHHHHH
Confidence            478999 8 8887   55432 11 11 1221  2222333    357888887 34432   23346677999988865


Q ss_pred             hC---C----------C-CCEEEEcCCCCCccccccccccccccccccc------eE-----EEEEcccCCC-CC-----
Q 010008          179 IL---K----------P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------YF-----ESMPYRLDES-TG-----  227 (520)
Q Consensus       179 ll---~----------p-GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~------~~-----~~v~~~~d~~-~~-----  227 (520)
                      +.   +          | ||+|+++++.|.|.....       +...+.      .+     .++.++.+.. ..     
T Consensus       139 a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  211 (449)
T 2cjg_A          139 AFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYT-------LSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMA  211 (449)
T ss_dssp             HHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTG-------GGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHH
T ss_pred             HHHHhcccccccccccCCCCEEEEECCCcCCcccch-------hhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccc
Confidence            42   2          2 899999998775542211       111110      01     2334443310 01     


Q ss_pred             ---CCCHHHHHHHhhh--cCCcEEEEcCCCCC-C-CCC----HHHHHHHHHHhCCEEEEechhhcccccccccCCCC---
Q 010008          228 ---LVDYDMLEKTAIL--FRPKLIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---  293 (520)
Q Consensus       228 ---~iD~d~le~~i~~--~~pklIi~~~s~~p-~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~---  293 (520)
                         ..|+++|+++++.  .++++|+++..+++ + ..+    +++|+++|+++|++||+|++|. |+...+.. ..+   
T Consensus       212 ~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g~g~~g~~-~~~~~~  289 (449)
T 2cjg_A          212 ALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQT-GCGLTGTA-WAYQQL  289 (449)
T ss_dssp             HHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSS-STHHHH
T ss_pred             hhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEecccc-CCCccCcc-eeeccc
Confidence               2466778888863  26788888765454 3 455    9999999999999999999976 54333321 011   


Q ss_pred             C-cccEEEeccCcccCCCCceEEEeeCCCcchhhHHHhhc-----ccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHH
Q 010008          294 K-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAIN-----NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ  367 (520)
Q Consensus       294 ~-~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i~-----~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~  367 (520)
                      . ..|+++  ++|+|   +.|++++++      ++.+.+.     .....+..++ +....+|..++|+.+.+   +++.
T Consensus       290 ~~~~di~t--~sK~l---~iG~~~~~~------~~~~~l~~~~~~~~~~~~t~~~-n~~~~~aa~aal~~~~~---~~~~  354 (449)
T 2cjg_A          290 DVAPDIVA--FGKKT---QVCGVMAGR------RVDEVADNVFAVPSRLNSTWGG-NLTDMVRARRILEVIEA---EGLF  354 (449)
T ss_dssp             TCCCSEEE--ECGGG---SSEEEEECG------GGGGSTTCTTTSTTSSCCSSSS-CHHHHHHHHHHHHHHHH---HTHH
T ss_pred             CCCceEEE--ecCcc---cEEEEEECH------HHhhhhhhcccCCcccccCCCC-CHHHHHHHHHHHHHHHh---ccHH
Confidence            1 357775  55998   578888887      5655422     1111122233 33344444456765543   2356


Q ss_pred             HHHHHHHHHHHHHHHHC-----C-CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEE
Q 010008          368 NKVVSNCRALASRLVEL-----G-YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIR  441 (520)
Q Consensus       368 ~~i~~na~~l~~~L~~~-----G-~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giR  441 (520)
                      +++.++++++.+.|.+.     + +..+.+  ...++++++... .+..++.+.|.+.||.+..    +     ..+.||
T Consensus       355 ~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~--~g~~~~~~~~~~-~~~~~~~~~l~~~Gv~v~~----~-----g~~~iR  422 (449)
T 2cjg_A          355 ERAVQHGKYLRARLDELAADFPAVVLDPRG--RGLMCAFSLPTT-ADRDELIRQLWQRAVIVLP----A-----GADTVR  422 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTTSEEEEE--ETTEEEEECSSH-HHHHHHHHHHHHTTEECEE----E-----TTTEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCceeeEee--ccEEEEEEECCh-HHHHHHHHHHHHCCeEEec----C-----CCCEEE
Confidence            77777888888888752     2 433332  234556676421 1235577777789999843    2     247899


Q ss_pred             EccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          442 IGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       442 ig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ++.+..    .+++|++++++.|+++++
T Consensus       423 i~~~~~----~t~e~i~~~l~~l~~~l~  446 (449)
T 2cjg_A          423 FRPPLT----VSTAEIDAAIAAVRSALP  446 (449)
T ss_dssp             ECCCTT----CCHHHHHHHHHHHHHHHH
T ss_pred             EECCCC----CCHHHHHHHHHHHHHHHH
Confidence            986643    458999999999998875

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.73  E-value=1.2e-15  Score=161.42  Aligned_cols=327  Identities=12%  Similarity=0.029  Sum_probs=182.1

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC-CCCCceeeecCChHHHHHHHHHhhCC--
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAILK--  181 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~-~~~~~~~V~~~sGs~A~~~~l~all~--  181 (520)
                      .+|.|.+|+...+... .. |....|  ..+...    ...++++++++.+ .++   .+..+||++|+.+++..+..  
T Consensus        78 ~~p~v~~A~~~~~~~~-~~-~~~~~~--~~~~~~----~la~~l~~~~~~~~~~~---v~~~~sGseA~~~Alk~a~~~~  146 (451)
T 3oks_A           78 SAPKVVEAVRSQVGDF-TH-TCFMVT--PYEGYV----AVCEQLNRLTPVRGDKR---SALFNSGSEAVENAVKIARSHT  146 (451)
T ss_dssp             TCHHHHHHHHHHHTTC-SC-CTTTTS--CCHHHH----HHHHHHHHHSSCCSSEE---EEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhc-cc-ccCCcc--CCHHHH----HHHHHHHHhCCcCCCCE---EEEeCcHHHHHHHHHHHHHHhc
Confidence            4899999998877532 11 111111  122222    2346788888754 222   24456788999999876643  


Q ss_pred             CCCEEEEcCCCCCcccccccc------ccccccccccceEEEEEccc---------CCCC-CCCCHHHHHHHhh----hc
Q 010008          182 PHDRIMGLDLPHGGHLSHGFM------TPKRRVSGTSIYFESMPYRL---------DEST-GLVDYDMLEKTAI----LF  241 (520)
Q Consensus       182 pGD~Vl~~~~~~~ghls~g~~------~~~~~v~~~g~~~~~v~~~~---------d~~~-~~iD~d~le~~i~----~~  241 (520)
                      .+++|++.++.|.|+......      .+..........+..++++.         +.+. ...+++.+++.++    ..
T Consensus       147 g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~  226 (451)
T 3oks_A          147 HKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGAD  226 (451)
T ss_dssp             CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGG
T ss_pred             CCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCC
Confidence            448999998877554211000      00000000111223344331         1000 0113444444443    23


Q ss_pred             CCcEEEEcCCCC-CC-CCC----HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC----cccEEEeccCccc-CCC
Q 010008          242 RPKLIIAGASAY-PR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSL-RGP  310 (520)
Q Consensus       242 ~pklIi~~~s~~-p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~----~aDiv~~S~hK~l-~Gp  310 (520)
                      ++++|++...+. ++ ..+    +++|+++|++||++||+|++|. |+...+.. ..+.    ..|++  |++|++ .|+
T Consensus       227 ~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~-~~~~~~~~~pdi~--t~sK~l~~G~  302 (451)
T 3oks_A          227 NLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQT-GFARTGAM-FACEHEGIDPDLI--VTAKGIAGGL  302 (451)
T ss_dssp             GEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSS-SGGGGGTCCCSEE--EECGGGGTTS
T ss_pred             CEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc-CCCccccc-hhhhhcCCCCCee--eehhhhhCCc
Confidence            456666654332 22 333    8999999999999999999964 54332211 1111    35777  455998 567


Q ss_pred             CceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH----C-C
Q 010008          311 RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----L-G  385 (520)
Q Consensus       311 rgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~----~-G  385 (520)
                      |.|++++++      ++.+.+......+..+++...+.+++ .+|+.+...   ++.+++.++.+++.+.|.+    . .
T Consensus       303 ~iG~v~~~~------~~~~~~~~~~~~~t~~~~~~~~aaa~-aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~  372 (451)
T 3oks_A          303 PLSAVTGRA------EIMDSPHVSGLGGTYGGNPIACAAAL-ATIETIESE---GLVARAQQIEKIMKDRLGRLQAEDDR  372 (451)
T ss_dssp             SCEEEEEEH------HHHTCSCTTSBCCSSSSCHHHHHHHH-HHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             ceEEEEECH------HHHhhhcCCCcCCCCCCCHHHHHHHH-HHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            889999987      67776654433344444444444444 356654332   3455566666666666654    2 2


Q ss_pred             CEEecCCCCCeeEEEEecC------CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHH
Q 010008          386 YKLVSGGSDNHLVLVDLRP------MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVA  459 (520)
Q Consensus       386 ~~v~~~gt~~~~~~vd~~~------~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~  459 (520)
                      +..+.+  ...++++++..      .......+.+.|.+.||.+..    +..   ..+.+||..+..    .+++|+++
T Consensus       373 ~~~~~~--~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~----~~~---~~~~iRi~~~~~----~t~e~i~~  439 (451)
T 3oks_A          373 IGDVRG--RGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLS----CGT---YGNVVRFLPPLS----IGDDLLNE  439 (451)
T ss_dssp             EEEEEE--ETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEE----ECT---TSCEEEECCCTT----CCHHHHHH
T ss_pred             eEEEEE--eeEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEec----CCC---CCCEEEEECCCC----CCHHHHHH
Confidence            222222  12355666632      111235577778889999843    221   136899986644    35899999


Q ss_pred             HHHHHHHHHH
Q 010008          460 IADFIHEGVE  469 (520)
Q Consensus       460 la~~i~~~l~  469 (520)
                      +.+.|+++++
T Consensus       440 ~l~~l~~~l~  449 (451)
T 3oks_A          440 GLDVLEEVLR  449 (451)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998875

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.72  E-value=4.6e-16  Score=162.95  Aligned_cols=320  Identities=15%  Similarity=0.066  Sum_probs=185.6

Q ss_pred             cceEecCC--C---CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH
Q 010008           95 SLELIASE--N---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS  169 (520)
Q Consensus        95 ~i~Liase--n---~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs  169 (520)
                      .|++..+.  +   +.+|.|.+|+...+.+....+|+       .+...+    ..++++++++ ..++   .+..+||+
T Consensus        54 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-------~~~~~~----l~~~l~~~~~-~~~~---v~~~~~g~  118 (424)
T 2e7u_A           54 YLDYVMSWGPLILGHAHPKVLARVRETLERGLTFGAP-------SPLEVA----LAKKVKRAYP-FVDL---VRFVNSGT  118 (424)
T ss_dssp             EEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSCCSSC-------CHHHHH----HHHHHHHHCT-TCCE---EEEESSHH
T ss_pred             EEEccccccccccCCCCHHHHHHHHHHHHhCCCCCCC-------CHHHHH----HHHHHHHhCC-CCCE---EEEeCCHH
Confidence            46766553  2   35899999998887652111221       122233    3467888885 4432   23356677


Q ss_pred             HHHHHHHHh---hCCCCCEEEEcCCCCCcccccccccccc---c---cccccce----EEEEEcccCCCCCCCCHHHHHH
Q 010008          170 PANFEVYTA---ILKPHDRIMGLDLPHGGHLSHGFMTPKR---R---VSGTSIY----FESMPYRLDESTGLVDYDMLEK  236 (520)
Q Consensus       170 ~A~~~~l~a---ll~pGD~Vl~~~~~~~ghls~g~~~~~~---~---v~~~g~~----~~~v~~~~d~~~~~iD~d~le~  236 (520)
                      +|+.+++..   +. ++|.|++.++.|.|+..........   .   ....|..    ..++.++      ..|+++|++
T Consensus       119 ea~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~------~~d~~~le~  191 (424)
T 2e7u_A          119 EATMSALRLARGYT-GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLE------YNDPEGLRE  191 (424)
T ss_dssp             HHHHHHHHHHHHHH-CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEEC------TTCHHHHHH
T ss_pred             HHHHHHHHHHHHhh-CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCC------CCCHHHHHH
Confidence            999988875   44 4588888888765432111000000   0   0001110    0122222      148999999


Q ss_pred             Hhhh--cCCcEEEEcCCCC-CC-CCC----HHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEeccCc
Q 010008          237 TAIL--FRPKLIIAGASAY-PR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHK  305 (520)
Q Consensus       237 ~i~~--~~pklIi~~~s~~-p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S~hK  305 (520)
                      +++.  .++++|+++..+. .+ ..+    +++|+++ +++|++||+|++|. |+ ..+.. . ..+. ..|++  |++|
T Consensus       192 ~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~-g~-~~g~~~~~~~~~~~~di~--s~sK  266 (424)
T 2e7u_A          192 VLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMT-GF-RLAFGGATELLGLKPDLV--TLGK  266 (424)
T ss_dssp             HHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTT-TT-TSSTTHHHHHHTCCCSEE--EECG
T ss_pred             HHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcc-cc-ccchhHHHHHhCCCcchh--hhhh
Confidence            8874  2567777764332 23 566    9999999 99999999999976 65 22210 0 0001 35766  6679


Q ss_pred             ccC-CCCceEEEeeCCCcchhhHHHhhcc-cC-CC-CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 010008          306 SLR-GPRGGMIFFKKDPVLGVELESAINN-AV-FP-GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRL  381 (520)
Q Consensus       306 ~l~-GprgG~I~~~~~~~~~~~l~~~i~~-~~-~p-~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L  381 (520)
                      ++. |.++|++++++      ++.+.+.. .. +. +..++ +...+++..++++.+.+  .+++.+++.++++++.+.|
T Consensus       267 ~l~~G~~~G~~~~~~------~~~~~~~~~~~~~~~~t~~~-~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L  337 (424)
T 2e7u_A          267 ILGGGLPAAAYAGRR------EIMEKVAPLGPVYQAGTLSG-NPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGL  337 (424)
T ss_dssp             GGGTTSSCEEEEECH------HHHTTBTTTSSBCCCCTTCS-CHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCcceEEEEEcH------HHHhhhcccCCcccCCCCCC-CHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHH
Confidence            985 56889999987      67776654 11 11 12222 33334444446665432  1346677788888888888


Q ss_pred             HHC----CCEE-ecCCCCCeeEEEEecCCC------------CCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEcc
Q 010008          382 VEL----GYKL-VSGGSDNHLVLVDLRPMG------------IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS  444 (520)
Q Consensus       382 ~~~----G~~v-~~~gt~~~~~~vd~~~~g------------~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~  444 (520)
                      ++.    ++.. +.+  ...++++++....            .+...+.+.|.+.||.+..    +.     ...+|++.
T Consensus       338 ~~~~~~~~~~~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~----~~-----~~~~~~~~  406 (424)
T 2e7u_A          338 KEVLKEKGLPHTVNR--VGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPP----SN-----FEAAFLSV  406 (424)
T ss_dssp             HHHHHHTTCCCEEEE--ETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCS----SS-----SSCEECCT
T ss_pred             HHHHHhCCCceEEEe--eceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEec----cC-----CCceEeec
Confidence            663    5531 222  2346777775311            1134567777789999843    32     12466542


Q ss_pred             CCccccCCCHHHHHHHHHHHHHH
Q 010008          445 PAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       445 ~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                            ..+++|++++++.|+++
T Consensus       407 ------~~t~~~i~~~l~~l~~~  423 (424)
T 2e7u_A          407 ------AHREEDVEKTLEALRKA  423 (424)
T ss_dssp             ------TCCHHHHHHHHHHHHHH
T ss_pred             ------cCCHHHHHHHHHHHHHh
Confidence                  25689999999998775

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.72  E-value=7.5e-15  Score=153.91  Aligned_cols=325  Identities=14%  Similarity=0.086  Sum_probs=181.9

Q ss_pred             ccceEecCC--C---CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh
Q 010008           94 KSLELIASE--N---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG  168 (520)
Q Consensus        94 ~~i~Liase--n---~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG  168 (520)
                      ..|++.++-  +   ..+|.|.+|+...+.+....+||.       +...++    .++++++++ ..++   .+...||
T Consensus        54 ~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~-------~~~~~l----a~~l~~~~~-~~~~---v~~~~sG  118 (429)
T 4e77_A           54 AYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFGAPT-------EMEVKM----AQLVTDLVP-TMDM---VRMVNSG  118 (429)
T ss_dssp             EEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCSSCC-------HHHHHH----HHHHHHHST-TCSE---EEEESSH
T ss_pred             EEEECCCchhccccCCCCHHHHHHHHHHHHhCcccCCCC-------HHHHHH----HHHHHhhCC-CCCE---EEEeCcH
Confidence            346665543  2   258999999998876543223332       222233    367888886 4432   2445678


Q ss_pred             HHHHHHHHHhhC--CCCCEEEEcCCCCCccccccccccccccccccceEEEEEccc--------CCC---CCCCCHHHHH
Q 010008          169 SPANFEVYTAIL--KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL--------DES---TGLVDYDMLE  235 (520)
Q Consensus       169 s~A~~~~l~all--~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~--------d~~---~~~iD~d~le  235 (520)
                      ++|+..++....  ..++.|++.++.|.|.....       +...+........+.        ...   -...|+++|+
T Consensus       119 sea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le  191 (429)
T 4e77_A          119 TEATMSAIRLARGYTGRDKIIKFEGCYHGHADCL-------LVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVR  191 (429)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEETTCCCC-------------------------CCCTTSCGGGGTTEEEECTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhh-------hhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHH
Confidence            899998887532  35678888887654332100       000000000000000        000   0012899999


Q ss_pred             HHhhhc--CCcEEEEcCCCC-CC-CCC----HHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEeccC
Q 010008          236 KTAILF--RPKLIIAGASAY-PR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTH  304 (520)
Q Consensus       236 ~~i~~~--~pklIi~~~s~~-p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S~h  304 (520)
                      +++++.  ++++|++...++ ++ ..+    +++|+++|+++|++||+|++|. |+ ..+...  ..+. ..|++  |++
T Consensus       192 ~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~-g~-r~g~~~~~~~~~~~pdi~--t~s  267 (429)
T 4e77_A          192 QAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMT-GF-RVALAGAQDYYHVIPDLT--CLG  267 (429)
T ss_dssp             HHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTT-BT-TTBTTCHHHHTTCCCSEE--EEE
T ss_pred             HHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-Cc-ccCcchHHHhcCCCCCee--eec
Confidence            999753  456677654332 23 445    8999999999999999999976 54 222110  0011 34776  555


Q ss_pred             ccc-CCCCceEEEeeCCCcchhhHHHhhcccC--CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 010008          305 KSL-RGPRGGMIFFKKDPVLGVELESAINNAV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRL  381 (520)
Q Consensus       305 K~l-~GprgG~I~~~~~~~~~~~l~~~i~~~~--~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L  381 (520)
                      |++ +|+|.|++++++      ++.+.+....  +.+...+.+...+++...+|+.+..+   ++.+++.++.+.+.+.|
T Consensus       268 K~~~~G~~~G~~~~~~------~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L  338 (429)
T 4e77_A          268 KIIGGGMPVGAFGGRR------EVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQV---GVYETLTELTDSLATGL  338 (429)
T ss_dssp             GGGGTTSCCEEEEECH------HHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTST---THHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCeEEEEECH------HHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHH
Confidence            998 467889999987      6766665321  11111123344444444567766443   34556666677777766


Q ss_pred             HH----CCCEEecCCCCCeeEEEEecCCC-C------------CHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEcc
Q 010008          382 VE----LGYKLVSGGSDNHLVLVDLRPMG-I------------DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS  444 (520)
Q Consensus       382 ~~----~G~~v~~~gt~~~~~~vd~~~~g-~------------~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~  444 (520)
                      .+    .++.....+ ...++++.+.... .            ....+.+.|.+.||.+..    +.     ...+|++.
T Consensus       339 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~----~~-----~~~~~~~~  408 (429)
T 4e77_A          339 RHAAKEENIPLVVNH-VGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAP----SA-----FEAGFMSL  408 (429)
T ss_dssp             HHHHHHTTCCCEEEE-ETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCS----ST-----TSCEECCT
T ss_pred             HHHHHhCCCceEEEE-eeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEee----cC-----CCCEEEec
Confidence            54    344322211 2345666664320 0            115567778888999843    21     23466642


Q ss_pred             CCccccCCCHHHHHHHHHHHHHHHH
Q 010008          445 PAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       445 ~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                            ..+++|++++++.|+++++
T Consensus       409 ------~~t~e~i~~~l~~l~~~l~  427 (429)
T 4e77_A          409 ------AHSNEDIQKTVNAARRCFA  427 (429)
T ss_dssp             ------TCCHHHHHHHHHHHHHHHT
T ss_pred             ------cCCHHHHHHHHHHHHHHHH
Confidence                  2568999999999998764

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.72  E-value=1.1e-15  Score=161.48  Aligned_cols=322  Identities=13%  Similarity=0.076  Sum_probs=184.5

Q ss_pred             ccceEecCC--C---CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh
Q 010008           94 KSLELIASE--N---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG  168 (520)
Q Consensus        94 ~~i~Liase--n---~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG  168 (520)
                      ..|++..+.  +   +.+|.|.+++...+.+....||           .++++....++++++++ ..++   .+..++|
T Consensus        58 ~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~-----------~~~~~~~la~~l~~~~~-~~~~---v~~~~gg  122 (453)
T 2cy8_A           58 VYLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQYAA-----------SHPLEVRWAERIVAAFP-SIRK---LRFTGSG  122 (453)
T ss_dssp             EEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTCSSCS-----------SCHHHHHHHHHHHHHCT-TCSE---EEEESCH
T ss_pred             EEEECcccHhhcccCCCCHHHHHHHHHHHHhCCCCCC-----------CCHHHHHHHHHHHhhCC-CCCE---EEEeCCH
Confidence            346665553  2   3689999999888754211111           12444455678888886 4442   2345677


Q ss_pred             HHHHHHHHHh---hCCCCCEEEEcCCCCCcccccccccccc---ccccccceE----EEEEcccCCCCCCCCHHHHHHHh
Q 010008          169 SPANFEVYTA---ILKPHDRIMGLDLPHGGHLSHGFMTPKR---RVSGTSIYF----ESMPYRLDESTGLVDYDMLEKTA  238 (520)
Q Consensus       169 s~A~~~~l~a---ll~pGD~Vl~~~~~~~ghls~g~~~~~~---~v~~~g~~~----~~v~~~~d~~~~~iD~d~le~~i  238 (520)
                      ++|+.+++.+   +.+ +|+|++.++.|.|...........   .....|...    .++.++      ..|+++|++++
T Consensus       123 ~eA~~~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~d~~~le~~l  195 (453)
T 2cy8_A          123 TETTLLALRVARAFTG-RRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIR------PDDIEGMREVF  195 (453)
T ss_dssp             HHHHHHHHHHHHHHHC-CCEEEEECC----------------------------CGGGEEEEC------TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhC-CCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecC------CCCHHHHHHHH
Confidence            7999998887   555 478888887764432110000000   000011100    011211      14899999998


Q ss_pred             hhc--CCcEEEEcCCCCC-C-CCC----HHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEeccCccc
Q 010008          239 ILF--RPKLIIAGASAYP-R-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSL  307 (520)
Q Consensus       239 ~~~--~pklIi~~~s~~p-~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S~hK~l  307 (520)
                      ++.  ++++|+++..+++ + ..+    +++|+++|++||++||+|++|. |+ ..+...  ..+. ..|++  |++|++
T Consensus       196 ~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~-~~g~~~~~~~~~~~~di~--s~sK~l  271 (453)
T 2cy8_A          196 ANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVIS-GF-RVGNHGMQALLDVQPDLT--CLAKAS  271 (453)
T ss_dssp             HHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TT-TTCTTHHHHHHTCCCSEE--EEEGGG
T ss_pred             HhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-cc-ccCchhhhHHhCCCCcEE--EEChhh
Confidence            742  5778887654333 3 456    9999999999999999999986 65 322100  0011 35776  566998


Q ss_pred             C-CCCceEEEeeCCCcchhhHHHhhcc---c-CCC-CCCCCChHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHHH
Q 010008          308 R-GPRGGMIFFKKDPVLGVELESAINN---A-VFP-GLQGGPHNHTIGGLAVCLKH-AQSPEFKVYQNKVVSNCRALASR  380 (520)
Q Consensus       308 ~-GprgG~I~~~~~~~~~~~l~~~i~~---~-~~p-~~~g~p~~~~iaala~al~~-~~~~~~~~~~~~i~~na~~l~~~  380 (520)
                      . |+++|++++++      ++.+.+..   . .+. +..++ +...+++...+++. + .+   ++.+++.++++.+.+.
T Consensus       272 ~~G~~~G~v~~~~------~~~~~l~~~~~~~~~~~~t~~~-n~~~~aa~~aal~~~~-~~---~~~~~~~~~~~~l~~~  340 (453)
T 2cy8_A          272 AGGLPGGILGGRE------DVMGVLSRGSDRKVLHQGTFTG-NPITAAAAIAAIDTIL-ED---DVCAKINDLGQFAREA  340 (453)
T ss_dssp             GTTSSCEEEEECH------HHHTTSSSCC---------CCC-CHHHHHHHHHHHHHHH-HT---THHHHHHHHHHHHHHH
T ss_pred             hCCcceEEEechH------HHHHHhccccCCCceeCCCCCC-CHHHHHHHHHHHHHHh-hh---hHHHHHHHHHHHHHHH
Confidence            5 57899999987      67666654   1 111 11222 33344444446765 4 22   3456677778888887


Q ss_pred             HHHC----CCEE-ecCCCCCeeEEEEecC-----C-------------CCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCC
Q 010008          381 LVEL----GYKL-VSGGSDNHLVLVDLRP-----M-------------GIDGARVEKILDMASITLNKNSVPGDKSALVP  437 (520)
Q Consensus       381 L~~~----G~~v-~~~gt~~~~~~vd~~~-----~-------------g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~  437 (520)
                      |.+.    ++.. +.+  ...++++++..     .             ..+..++.+.|.+.||.+.    |+       
T Consensus       341 L~~~~~~~~~~~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~----~~-------  407 (453)
T 2cy8_A          341 MNHLFARKGLNWLAYG--RFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIG----GR-------  407 (453)
T ss_dssp             HHHHHHHTTCCEEEEC--CTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEECB----TT-------
T ss_pred             HHHHHhhCCCcEEEEE--eeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCeEEe----CC-------
Confidence            7652    4432 222  23466777753     1             0113557777778899982    32       


Q ss_pred             CEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          438 GGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       438 ~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      +.+|++.      ..+++|++++.+.|+++++..
T Consensus       408 ~~~~l~~------~~t~~~i~~~l~~l~~~l~~~  435 (453)
T 2cy8_A          408 GSVFLSA------QHEREHVEHLVTTFDRVLDRL  435 (453)
T ss_dssp             TEEECCT------TCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEeec------cCCHHHHHHHHHHHHHHHHHH
Confidence            2366641      256899999999999988653

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.72  E-value=1.4e-16  Score=164.88  Aligned_cols=311  Identities=12%  Similarity=0.122  Sum_probs=191.1

Q ss_pred             cchhHH-HHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCC---C-CEEEEcCCCCCcccccccccccc
Q 010008          133 GNEYID-ELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKP---H-DRIMGLDLPHGGHLSHGFMTPKR  206 (520)
Q Consensus       133 g~~~~d-~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~p---G-D~Vl~~~~~~~ghls~g~~~~~~  206 (520)
                      |...+- .-|.++.+|++.+ |++...-  .+. .+|+ .++++++++.+++   | |+|+++...|-+.+        +
T Consensus       110 Gssll~~ltn~l~ld~L~~~-G~~~~~~--~fl-VnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~--------k  177 (501)
T 3hl2_A          110 GSSLLNKITNSLVLDIIKLA-GVHTVAN--CFV-VPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF--------K  177 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-TCTTCCE--EEE-ESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH--------H
T ss_pred             chHHHHHHHHHHHHHHHHHc-CCCCCCc--EEE-ECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHH--------H
Confidence            444443 3355677777776 9985321  122 3444 5777777777664   4 99999887664432        3


Q ss_pred             ccccccceEEEEEcc--cCCCCCCCCHHHHHHHhhhcCCc--EEEEc-CCCC-CC-CCCHHHHHHHHHHhCCEEEEechh
Q 010008          207 RVSGTSIYFESMPYR--LDESTGLVDYDMLEKTAILFRPK--LIIAG-ASAY-PR-DFDYPRMRQIADAVGALLMMDMAH  279 (520)
Q Consensus       207 ~v~~~g~~~~~v~~~--~d~~~~~iD~d~le~~i~~~~pk--lIi~~-~s~~-p~-~~d~~~i~~ia~~~g~~li~D~Ah  279 (520)
                      .+.+.|.  +++.++  ++.+...+|+++++++++++.++  ++++. .+.| |+ ..|+++|+++|+++|+++++|+||
T Consensus       178 AliL~Gl--~Pv~V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAh  255 (501)
T 3hl2_A          178 SMITAGF--EPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAY  255 (501)
T ss_dssp             HHHHTTC--EEEEECEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTT
T ss_pred             HHHHcCC--eEEEEeeeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcc
Confidence            4556676  444433  33345789999999999886433  44444 4445 44 579999999999999999999998


Q ss_pred             hccccccccc-CCCCC-c-ccEEEeccCcccCCCCceEE-EeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHH
Q 010008          280 ISGLVAASVV-ADPFK-Y-CDVVTTTTHKSLRGPRGGMI-FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCL  355 (520)
Q Consensus       280 ~~gli~~~~~-~~p~~-~-aDiv~~S~hK~l~GprgG~I-~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al  355 (520)
                      .+.+.+.... .+.+. + +|+++.|+||++..|-||.+ +.+++     ++.+++.. .+|+.+.+   ...+.+..++
T Consensus       256 Gah~~~~~~lp~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~-----e~l~~~~~-~yPGr~S~---Spsldl~~tL  326 (501)
T 3hl2_A          256 GVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFND-----SFIQEISK-MYPGRASA---SPSLDVLITL  326 (501)
T ss_dssp             CTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCH-----HHHHHHHH-TSCSCBCS---HHHHHHHHHH
T ss_pred             hhhhhhhhhhHHHHHhcCCCcEEEecccccceeecCceEEEeCCH-----HHHHHHHH-hCCCCCCC---cHHHHHHHHH
Confidence            7655332211 12222 5 99999999999988877654 46654     66666644 46666533   1222333455


Q ss_pred             HHhcCchhHHHHHHHHHHHHHHHHHHHH----CCCEEecCCCCCeeE-EEEecCCCC----CHHHHHHHHhhcCeEEcCC
Q 010008          356 KHAQSPEFKVYQNKVVSNCRALASRLVE----LGYKLVSGGSDNHLV-LVDLRPMGI----DGARVEKILDMASITLNKN  426 (520)
Q Consensus       356 ~~~~~~~~~~~~~~i~~na~~l~~~L~~----~G~~v~~~gt~~~~~-~vd~~~~g~----~~~~~~~~L~~~gI~v~~~  426 (520)
                      ..+...+|++..++..+++++|.+.|++    .|-+++.. ..|.+. .+.+...+-    +..++-..|-..+|.-...
T Consensus       327 L~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~-~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rv  405 (501)
T 3hl2_A          327 LSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHT-PHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARV  405 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCC-TTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCC-CCCceeEEEecccccccccccHHHHHHHHHhcCCCccee
Confidence            5555577899999999999999999987    35565532 124433 234433211    1233445555555431111


Q ss_pred             CCCCCC---------------CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          427 SVPGDK---------------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       427 ~~Pg~~---------------~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      -.||+.               ..+...++-+.    ...|++++|++.+.+.+++++...
T Consensus       406 v~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a----~aiG~~~~~v~~~~~~l~~~~~~~  461 (501)
T 3hl2_A          406 VPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAA----SAIGMKMQDVDLFIKRLDRCLKAV  461 (501)
T ss_dssp             ECTTCCEEETTEEESSTTTTSSCCSSCEEEEE----CCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCceEECCeeecCcccCCCCCCchHHHHH----HHcCCCHHHHHHHHHHHHHHHHHH
Confidence            012220               11112233332    236999999999999999999755

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.60  E-value=1.6e-14  Score=153.66  Aligned_cols=316  Identities=14%  Similarity=0.123  Sum_probs=177.9

Q ss_pred             ChHHHHHHHhhhhhcc-CCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC---
Q 010008          105 TSRAVMEAVGSCLTNK-YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---  180 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~-y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all---  180 (520)
                      .+|.|.+|+...+... +..+ +  . |+. ....++++...++++++++...++   .+...||++||..++..+.   
T Consensus        80 ~~p~v~~A~~~~~~~~~~~~~-~--~-~~~-~~~~~l~~~la~~l~~~~~~~~~~---v~f~~sGseA~~~Aik~a~~~~  151 (472)
T 1ohv_A           80 SHPALVKLVQQPQNVSTFINR-P--A-LGI-LPPENFVEKLRESLLSVAPKGMSQ---LITMACGSCSNENAFKTIFMWY  151 (472)
T ss_dssp             TCHHHHHHHHCGGGHHHHHCC-C--C-TTT-SCBTTHHHHHHHTGGGGCCTTCCE---EEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhcccccc-c--c-ccc-ccHHHHHHHHHHHHHHhCCCCcCE---EEEeCCchhHHHHHHHHHHHHh
Confidence            5899999998765321 1111 1  1 111 111234433334555666444432   2445788899999987663   


Q ss_pred             ----------------------CCC---CEEEEcCCCCCccccccccccccccccccc--------e---EEEEEcccC-
Q 010008          181 ----------------------KPH---DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI--------Y---FESMPYRLD-  223 (520)
Q Consensus       181 ----------------------~pG---D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~--------~---~~~v~~~~d-  223 (520)
                                            +||   |+|+.+++.|.|+....       +.+.|.        .   +..++++.. 
T Consensus       152 ~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~p~~~  224 (472)
T 1ohv_A          152 RSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGC-------LATTHSKAIHKIDIPSFDWPIAPFPRLK  224 (472)
T ss_dssp             HHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHH-------HHHCCSCHHHHTTSCCCCCCEECCCCCC
T ss_pred             hhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHH-------HhcCCCccccccCCCCCCCcccCCCccc
Confidence                                  157   89999998764432111       111111        0   011122210 


Q ss_pred             -C--CC-------CCCCHHHHHHHhhhc-----CCcEEEEcCC-CCCC-CCC----HHHHHHHHHHhCCEEEEechhhcc
Q 010008          224 -E--ST-------GLVDYDMLEKTAILF-----RPKLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISG  282 (520)
Q Consensus       224 -~--~~-------~~iD~d~le~~i~~~-----~pklIi~~~s-~~p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~g  282 (520)
                       +  ..       ...|+++|+++++++     ++++|++... ++.+ ..+    +++|+++|+++|++||+|++|. |
T Consensus       225 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g  303 (472)
T 1ohv_A          225 YPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQT-G  303 (472)
T ss_dssp             SSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTT-T
T ss_pred             CccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCccc-C
Confidence             0  00       023688999988763     6788888743 3333 556    9999999999999999999975 4


Q ss_pred             ccccccc-C-CCCC---cccEEEeccCcc-cCCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHH
Q 010008          283 LVAASVV-A-DPFK---YCDVVTTTTHKS-LRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK  356 (520)
Q Consensus       283 li~~~~~-~-~p~~---~aDiv~~S~hK~-l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~  356 (520)
                      +...+.. . ..+.   ..|++++  +|+ ++   ||+++ ++      ++. .+......+..+++.. .+++..++|+
T Consensus       304 ~g~~g~~~~~~~~gv~~~~Di~t~--sK~~l~---GG~~~-~~------~~~-~~~~~~~~~T~~~~~~-~~aaa~aal~  369 (472)
T 1ohv_A          304 GGSTGKFWAHEHWGLDDPADVMTF--SKKMMT---GGFFH-KE------EFR-PNAPYRIFNTWLGDPS-KNLLLAEVIN  369 (472)
T ss_dssp             TTTTSSSSGGGGGCCSSCCSEEEE--CGGGSS---EEEEE-CG------GGS-CSSSSSSCCSSSSCHH-HHHHHHHHHH
T ss_pred             CCCCCCchhccccCCCCCCCEEEE--cccccc---CCccC-ch------hhc-ccccccccCccCccHH-HHHHHHHHHH
Confidence            3322210 0 0011   1677654  599 44   47776 44      442 1222212222333333 4444445677


Q ss_pred             HhcCchhHHHHHHHHHHHHHHHHHHHHC--C----CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCC
Q 010008          357 HAQSPEFKVYQNKVVSNCRALASRLVEL--G----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG  430 (520)
Q Consensus       357 ~~~~~~~~~~~~~i~~na~~l~~~L~~~--G----~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg  430 (520)
                      .+.++   .+.+++.+++++|.+.|.+.  +    +..+.+  ...++.+++.. ..+...+.+.|.+.||.+.    |+
T Consensus       370 ~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~--~g~~~~~~~~~-~~~~~~~~~~l~~~Gv~~~----~~  439 (472)
T 1ohv_A          370 IIKRE---DLLSNAAHAGKVLLTGLLDLQARYPQFISRVRG--RGTFCSFDTPD-ESIRNKLISIARNKGVMLG----GC  439 (472)
T ss_dssp             HHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEE--ETTEEEEECSS-HHHHHHHHHHHHHTTEECE----EE
T ss_pred             HHHhC---CHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecC--CceEEEEEeCC-hhHHHHHHHHHHHCCeEEe----cC
Confidence            65432   34567777788888888653  2    222222  23455566542 1123456677777899984    32


Q ss_pred             CCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          431 DKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       431 ~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                           ..+.||++.+..+    +++|++++++.|.+++.
T Consensus       440 -----g~~~iRi~~~~~~----t~e~i~~~~~~l~~~l~  469 (472)
T 1ohv_A          440 -----GDKSIRFRPTLVF----RDHHAHLFLNIFSDILA  469 (472)
T ss_dssp             -----TTTEEEECCCTTC----CHHHHHHHHHHHHHHHH
T ss_pred             -----CCCEEEEECCCCC----CHHHHHHHHHHHHHHHH
Confidence                 2468999876544    58999999999998875

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.49  E-value=1.2e-11  Score=130.42  Aligned_cols=308  Identities=18%  Similarity=0.149  Sum_probs=171.4

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC--CC
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--KP  182 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all--~p  182 (520)
                      -.|.|.+|+...+......+.+       +....++    .+++++++.-- +.   ....+||++||..++....  .-
T Consensus       104 ~hp~v~~Av~~q~~~~~~~~~~-------~~~~~~l----ae~l~~~~p~~-~~---v~f~~SGsEA~e~AiklAr~~tg  168 (454)
T 4ao9_A          104 SAPEIRDAVIEAMQGGINLTGH-------NLLEGRL----ARLICERFPQI-EQ---LRFTNSGTEANLMALTAALHFTG  168 (454)
T ss_dssp             CCHHHHHHHHHHHHTCSCCCSE-------ESSHHHH----HHHHHHHSTTC-SE---EEEESSHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHhcCCCccCC-------cHHHHHH----HHHHHHhCCCC-CE---EEEeCchHHHHHHHHHHHHhccc
Confidence            4799999998877644322211       2222233    35677777422 21   2345799999998886542  23


Q ss_pred             CCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCC--cEEEEcC--CCCCCCCC
Q 010008          183 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRP--KLIIAGA--SAYPRDFD  258 (520)
Q Consensus       183 GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~p--klIi~~~--s~~p~~~d  258 (520)
                      .++|+..+-.|.|+.. +.....   .-....+....++      .-|.+.+++.++++.+  .+||+..  .+.+...+
T Consensus       169 r~~ii~~~~~yHG~t~-~~~~~~---~~~~~~~~~~~~p------~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p  238 (454)
T 4ao9_A          169 RRKIVVFSGGYHGGVL-GFGARP---SPTTVPFDFLVLP------YNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPG  238 (454)
T ss_dssp             CCEEEEETTCBCSTTC-BBSSSB---CTTSCCSEEEEEC------TTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEEC
T ss_pred             CCeEEEEeCCcCCccc-cccccc---cCccCCCCcccCC------CchHHHHHHHHhhcCCceEEEEeccccCCCCccCC
Confidence            4678887765433311 110000   0011112222322      2378899998876433  4566652  22222333


Q ss_pred             ----HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEEEeccCcccCC-CCceEEEeeCCCcchhhHHHhhc
Q 010008          259 ----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKDPVLGVELESAIN  332 (520)
Q Consensus       259 ----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S~hK~l~G-prgG~I~~~~~~~~~~~l~~~i~  332 (520)
                          +++|+++|+++|++||+|+.|. |-........-+. ..|+++.+  |.+.| ...|.+.+++      ++.+.+.
T Consensus       239 ~~~fL~~lr~lc~~~g~lLI~DEV~t-GR~G~~~a~e~~gv~PDi~t~g--K~lggG~Piga~~~~~------ei~~~~~  309 (454)
T 4ao9_A          239 QPDFLQALRESATQVGALLVFDEVMT-SRLAPHGLANKLGIRSDLTTLG--KYIGGGMSFGAFGGRA------DVMALFD  309 (454)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEECTTG-GGGSTTCHHHHHTCCCSEEEEE--GGGGTTSSCEEEEECH------HHHGGGC
T ss_pred             chhhHHHHHHHHhhcCCEEEEECCCc-CCCccccchhccCCCCcEEEec--cccCCCCcceeeeeHH------HHHHHHh
Confidence                8999999999999999999985 5332111000001 25888766  98854 4558888887      6776665


Q ss_pred             ccC----CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH----CCC--EEecCCCCCeeEEEEe
Q 010008          333 NAV----FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGY--KLVSGGSDNHLVLVDL  402 (520)
Q Consensus       333 ~~~----~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~----~G~--~v~~~gt~~~~~~vd~  402 (520)
                      ...    ..++.++......|++ ++|+.+.++   +..+++.++.++|.+.|++    .++  .+-.-|   .++-+.+
T Consensus       310 ~~~~~~~h~~T~~gnPla~AAal-a~L~~l~~~---~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G---~m~gi~f  382 (454)
T 4ao9_A          310 PRTGPLAHSGTFNNNVMTMAAGY-AGLTKLFTP---EAAGALAERGEALRARLNALCANEGVAMQFTGIG---SLMNAHF  382 (454)
T ss_dssp             TTTCSCCCCCTTTTCHHHHHHHH-HHHHHTSCH---HHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEET---TEEEEES
T ss_pred             hccCCccccCCCCCCHHHHHHHH-HHHHHHhcc---ChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeec---eEEEEEE
Confidence            322    1223334333333333 367777654   4456677777788887765    232  221111   1222333


Q ss_pred             cCC---------CCCH---HHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          403 RPM---------GIDG---ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       403 ~~~---------g~~~---~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      ...         ..+.   ..+...|.+.||.+.    |       .+.+.++++      +|++|++++.++|++++..
T Consensus       383 ~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~----p-------~~~~~~s~~------~T~~dId~~l~al~~~l~~  445 (454)
T 4ao9_A          383 VQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSS----P-------RGFVVLSLP------LTDADIDRYVAAIGSFIGG  445 (454)
T ss_dssp             CCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECC----T-------TCEEECCTT------CCHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEc----C-------CCCEEEeCC------CCHHHHHHHHHHHHHHHHh
Confidence            211         1122   234455678899873    2       123455443      5689999999999999875

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.17  E-value=7.8e-15  Score=155.44  Aligned_cols=317  Identities=14%  Similarity=0.077  Sum_probs=179.2

Q ss_pred             ccceEecCCC-----CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHc-CCCCCCCceeeecCC
Q 010008           94 KSLELIASEN-----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF-NLDENKWGVNVQPLS  167 (520)
Q Consensus        94 ~~i~Liasen-----~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lf-g~~~~~~~~~V~~~s  167 (520)
                      ..|++..+..     ..+|.|.+|+...+.+....+|+.       +...+++    +++++++ +.+.     .+..+|
T Consensus       101 ~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~~~~~~-------~~~~~La----e~L~~~~p~~~~-----v~~~nS  164 (465)
T 2yky_A          101 AYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLNLSTQT-------ENEALFA----EAVCDRFPSIDL-----VRFTNS  164 (465)
Confidence            4567665543     237899999987775532222221       2222333    6777888 4332     234578


Q ss_pred             hHHHHHHHHHhh--CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh--cCC
Q 010008          168 GSPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL--FRP  243 (520)
Q Consensus       168 Gs~A~~~~l~al--l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~--~~p  243 (520)
                      |++|+..++...  ...+|+|+..+..|.|+.. +..+   .....|.....+.++      ..|+++|+++++.  .++
T Consensus       165 GseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~-~~~s---g~~~~g~~~~~~~~~------~~d~~~l~~~l~~~~~~~  234 (465)
T 2yky_A          165 GTEANLMALATATAITGRKTVLAFDGGYHGGLL-NFAS---GHAPTNAPYHVVLGV------YNDVEGTADLLKRHGHDC  234 (465)
Confidence            999999988764  2345999999877644321 1000   000011100122222      1378899988873  378


Q ss_pred             cEEEEcCC-CCCC-CCC----HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC----cccEEEeccCcccC-CCCc
Q 010008          244 KLIIAGAS-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSLR-GPRG  312 (520)
Q Consensus       244 klIi~~~s-~~p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~----~aDiv~~S~hK~l~-Gprg  312 (520)
                      ++|++... ++++ ..+    +++|+++|+++|++||+|++|. + . .+. ...++    ..|++  |++|++. |++.
T Consensus       235 aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~-r-~g~-~~a~~~~gv~pDi~--t~sK~lg~G~pi  308 (465)
T 2yky_A          235 AAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-S-R-LSG-GGAQEMLGISADLT--TLGKYIGGGMSF  308 (465)
Confidence            88888742 3333 344    8999999999999999999987 4 2 111 10111    25665  5679984 5678


Q ss_pred             eEEEeeCCCcchhhHHHhhcc---c-C-CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC--C
Q 010008          313 GMIFFKKDPVLGVELESAINN---A-V-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL--G  385 (520)
Q Consensus       313 G~I~~~~~~~~~~~l~~~i~~---~-~-~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~--G  385 (520)
                      |++++++      ++.+.+..   . . ..+..+++.....+++ ++|+.+.++   .+.+++.++.+++.+.|.+.  .
T Consensus       309 G~v~~~~------~i~~~l~~~~~g~~~~~~T~~~npla~aAa~-aaL~~l~~~---~~~~~~~~~~~~l~~~L~~~~~~  378 (465)
T 2yky_A          309 GAFGGRR------DLMERFDPARDGAFAHAGTFNNNILTMSAGH-AALTQIYTR---QAASDLSASGDRFRANLNRIAVE  378 (465)
Confidence            9999988      56665544   1 1 1122233223233333 356655442   35566777777788877653  2


Q ss_pred             CEEe--cCCCCCeeEEEEecCCCC---------C---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccC
Q 010008          386 YKLV--SGGSDNHLVLVDLRPMGI---------D---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRG  451 (520)
Q Consensus       386 ~~v~--~~gt~~~~~~vd~~~~g~---------~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g  451 (520)
                      +.++  ..+ ...++++.+....+         +   ...+.+.|.+.||.+.    |+..     . . ++   +   .
T Consensus       379 ~~~~~~v~g-~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~----p~~~-----~-~-~s---~---~  440 (465)
T 2yky_A          379 NQAPLQFTG-LGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLA----PRGM-----Y-A-LS---L---E  440 (465)
Confidence            2221  111 23344554432010         1   2346666778999984    3210     0 1 22   1   2


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q 010008          452 FSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       452 ~~~~d~~~la~~i~~~l~~  470 (520)
                      .+++|++++.+.++++++.
T Consensus       441 ~t~edid~~l~~l~~~l~~  459 (465)
T 2yky_A          441 IADAGRDAFAEALADFIGE  459 (465)
Confidence            5689999999999888764

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.20  E-value=4.7e-08  Score=103.08  Aligned_cols=331  Identities=16%  Similarity=0.153  Sum_probs=170.5

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh--CC
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK  181 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al--l~  181 (520)
                      .-.|.|.+|+...+.. +.+..   .++..++  ..++  ..+++.+++..+..+  -.+..+|||+||..++...  ..
T Consensus        80 h~~p~v~~Ai~~q~~~-~~~~~---~~~~~~~--~~~~--lae~L~~~~p~~~~~--~v~f~~sGsEA~e~AlklAr~~t  149 (456)
T 4atq_A           80 ASDPAVVAAVQEAAAH-FTHTC---FMVTPYE--GYVA--VTEQLNRLTPGDHAK--RTVLFNSGAEAVENAVKVARLAT  149 (456)
T ss_dssp             TTCHHHHHHHHHHHHH-CSCCT---TTTSCCH--HHHH--HHHHHHHHSSCSSCE--EEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhh-ccCcc---cCccCcH--HHHH--HHHHHHHhCCCCCCc--EEEEeCChHHHHHHHHHHHhhhh
Confidence            3478888888776643 22211   1111122  1222  235677777543211  1234579999999888642  22


Q ss_pred             CCCEEEEcCCCCCcccccccc--cccc---ccccc--cceEEEEEcc--cCCCC-CCCCHHHHHHHh-------hhcCCc
Q 010008          182 PHDRIMGLDLPHGGHLSHGFM--TPKR---RVSGT--SIYFESMPYR--LDEST-GLVDYDMLEKTA-------ILFRPK  244 (520)
Q Consensus       182 pGD~Vl~~~~~~~ghls~g~~--~~~~---~v~~~--g~~~~~v~~~--~d~~~-~~iD~d~le~~i-------~~~~pk  244 (520)
                      ...+|+...-.|.|.- .+..  +...   ...+.  ...+..++++  ..... ...+.+.+++.+       ...+..
T Consensus       150 ~r~~ii~~~~~yHG~t-~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iA  228 (456)
T 4atq_A          150 GRDAVVAFDHAYHGRT-NLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVA  228 (456)
T ss_dssp             CCCEEEEETTCCCCSS-HHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEE
T ss_pred             cCCeEEEEecccCCcc-ccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceE
Confidence            3468888876554331 0100  0000   00000  0111222322  21111 122333333332       222456


Q ss_pred             EEEEcCC-CCCC-----CCCHHHHHHHHHHhCCEEEEechhhccccccccc--CCCCC-cccEEEeccCcccCC-CCceE
Q 010008          245 LIIAGAS-AYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSLRG-PRGGM  314 (520)
Q Consensus       245 lIi~~~s-~~p~-----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~--~~p~~-~aDiv~~S~hK~l~G-prgG~  314 (520)
                      +||+..- ...+     .--+++++++|++||++||+|+.+. |+--.|..  ...+. ..|+++++  |.+.| ...|.
T Consensus       229 AvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~t-G~GRtG~~~a~e~~gv~PDivt~g--K~lggg~P~~a  305 (456)
T 4atq_A          229 AIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQS-GFCRTGEWFAVDHEGVVPDIITMA--KGIAGGLPLSA  305 (456)
T ss_dssp             EEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTCCCSEEEEC--GGGGTTSSCEE
T ss_pred             EEEeccccCCCCccccchhhhHHHHHHHhhcCCceEeccccc-ccCCccccccccccCCCCchhhhh--hcccCcCCcee
Confidence            6777521 1222     2338999999999999999999864 43211110  00011 36999887  88743 44577


Q ss_pred             EEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-------CCE
Q 010008          315 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-------GYK  387 (520)
Q Consensus       315 I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-------G~~  387 (520)
                      +++++      ++.+.+......++.++......+|++ .|+.+.++++   .+++.+..+++.+.|++.       +.+
T Consensus       306 v~~~~------~i~~~~~~~~~~~Tf~gnpla~aaala-~L~~i~~~~l---~~~~~~~g~~l~~~L~~l~~~~~~~~~~  375 (456)
T 4atq_A          306 ITGRA------DLLDAVHPGGLGGTYGGNPVACAAALA-AIDTMEQHDL---NGRARHIEELALGKLRELAAELSAGGGS  375 (456)
T ss_dssp             EEEEH------HHHTTSCTTSSCCSSSSCHHHHHHHHH-HHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred             eEecH------HHHhcccccCCCCCCCCChHHHHhhHH-HHHHHhhccH---HHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence            88887      666666544444445554444444444 5776654443   344444455565555441       112


Q ss_pred             EecC--CCCCeeEEEEecCCC---CC---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHH
Q 010008          388 LVSG--GSDNHLVLVDLRPMG---ID---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVA  459 (520)
Q Consensus       388 v~~~--gt~~~~~~vd~~~~g---~~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~  459 (520)
                      ++..  |. ..+.-+++....   -+   ...+.+.|.+.|+.+...   |   + ....||+..| ++   ++++|+++
T Consensus       376 ~v~~VRG~-Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~---g---~-~~~~irl~Pp-L~---it~~~id~  443 (456)
T 4atq_A          376 VVGDIRGR-GAMLAIELVQPGSKEPNAELTKAVAAACLKEGVIILTC---G---T-YGNVIRLLPP-LV---ISDELLID  443 (456)
T ss_dssp             CEEEEEEE-TTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEE---C---T-TSCEEEECCC-TT---CCHHHHHH
T ss_pred             ceEEeeec-ceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEec---C---C-CCCEEEEECC-CC---CCHHHHHH
Confidence            2221  11 123334553211   12   234667788899987432   1   1 2357999754 44   57999999


Q ss_pred             HHHHHHHHHHH
Q 010008          460 IADFIHEGVEI  470 (520)
Q Consensus       460 la~~i~~~l~~  470 (520)
                      +.+.|.++++.
T Consensus       444 ~l~~l~~al~a  454 (456)
T 4atq_A          444 GLEVLAAAIKA  454 (456)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998873

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.04  E-value=8.5e-09  Score=116.46  Aligned_cols=211  Identities=11%  Similarity=0.003  Sum_probs=117.0

Q ss_pred             HHHHHHhhh-------cCCcEEEEcCC--CCCCCC--C---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC---
Q 010008          232 DMLEKTAIL-------FRPKLIIAGAS--AYPRDF--D---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK---  294 (520)
Q Consensus       232 d~le~~i~~-------~~pklIi~~~s--~~p~~~--d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~---  294 (520)
                      +.|++.+.+       .++.+||+...  +.++..  +   +++|+++|++||++||+|++|. |+-..|..- .++   
T Consensus       577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~t-GfGRtG~~f-a~e~~g  654 (831)
T 4a0g_A          577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFT-GFWRLGVET-TTELLG  654 (831)
T ss_dssp             HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTT-TTTTTSBSS-THHHHS
T ss_pred             HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCcc-ccccCCCch-hhHhcC
Confidence            567777652       23567777642  333322  2   8999999999999999999854 432222110 011   


Q ss_pred             -cccEEEeccCcccCC--CCceEEEeeCCCcchhhHHHhhccc------CCCCCCCCChHHHHHHHHHHHHHhcCchhHH
Q 010008          295 -YCDVVTTTTHKSLRG--PRGGMIFFKKDPVLGVELESAINNA------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV  365 (520)
Q Consensus       295 -~aDiv~~S~hK~l~G--prgG~I~~~~~~~~~~~l~~~i~~~------~~p~~~g~p~~~~iaala~al~~~~~~~~~~  365 (520)
                       ..|+++  +.|.|+|  .+.|++++++      ++.+.+...      ...++.+++.....+++ ++|+.+.++++.+
T Consensus       655 v~PDiit--lsK~L~gG~~Plgav~~~~------~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaal-a~L~~i~~~~l~~  725 (831)
T 4a0g_A          655 CKPDIAC--FAKLLTGGMVPLAVTLATD------AVFDSFSGDSKLKALLHGHSYSAHAMGCATAA-KAIQWFKDPETNH  725 (831)
T ss_dssp             SCCSEEE--ECGGGGTTSSCCEEEEECH------HHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHH-HHHHHHHCTTTCT
T ss_pred             CCCcEEE--EecccccCccCcEEEEECH------HHHHHHhcccccccceeecCCcccHHHHHHHH-HHHHHHHhhHHHH
Confidence             258875  5599966  3669999988      676665432      12233444444333443 3677665443311


Q ss_pred             HHHHHHH-H----HHHHHHHHHHC-CCEEecCCCCCeeEEEEecCC-------CCCHHHHHHHHhhcCeEEcCCCCCCCC
Q 010008          366 YQNKVVS-N----CRALASRLVEL-GYKLVSGGSDNHLVLVDLRPM-------GIDGARVEKILDMASITLNKNSVPGDK  432 (520)
Q Consensus       366 ~~~~i~~-n----a~~l~~~L~~~-G~~v~~~gt~~~~~~vd~~~~-------g~~~~~~~~~L~~~gI~v~~~~~Pg~~  432 (520)
                      ..++..+ .    .+.+.+.+.+. .+..+.+  ...+..+++...       ......+.+.|.+.||.+.    |+  
T Consensus       726 ~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg--~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~----p~--  797 (831)
T 4a0g_A          726 NITSQGKTLRELWDEELVQQISSHSAVQRVVV--IGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTR----PL--  797 (831)
T ss_dssp             TBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEE--ETTEEEEEEC---------CHHHHHHHHHHHHTTEECC----CB--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCceeEee--cccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEE----ec--
Confidence            1111000 0    11233445443 2322221  123444554321       0113457778889999984    32  


Q ss_pred             CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          433 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       433 ~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                          ...||+..+..+    +++|++++.+.|.++++
T Consensus       798 ----g~~lrl~pp~~~----t~e~id~~~~~l~~~l~  826 (831)
T 4a0g_A          798 ----GNVIYLMCGPCT----SPEICRRLLTKLYKRLG  826 (831)
T ss_dssp             ----TTEEEEECCTTC----CHHHHHHHHHHHHHHHT
T ss_pred             ----CCEEEEECCCCC----CHHHHHHHHHHHHHHHH
Confidence                358999877554    58999999999988775

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=98.95  E-value=8.2e-07  Score=94.00  Aligned_cols=325  Identities=13%  Similarity=0.091  Sum_probs=168.8

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC----
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  180 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all----  180 (520)
                      -.|.|.+|+...+..-. . +  ..+++. .....+| + .+++.+++..+.+.   .....|||+||..++....    
T Consensus        84 ~~p~v~~Ai~~q~~~l~-~-~--~~~~~~-~~~~~~~-l-Ae~L~~~~p~~~~~---v~f~~sGsEA~e~AiKlAr~~~~  153 (473)
T 4e3q_A           84 DHKGLIDAAKAQYERFP-G-Y--HAFFGR-MSDQTVM-L-SEKLVEVSPFDSGR---VFYTNSGSEANDTMVKMLWFLHA  153 (473)
T ss_dssp             CCHHHHHHHHHHHHHCC-C-C--CCCTTE-EEHHHHH-H-HHHHHHHSSCSSCE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcc-c-c--cccccc-cCHHHHH-H-HHHHHhhCCCCccE---EEEeCchHHHHHHHHHHHHHHHH
Confidence            47899999887765421 0 0  012221 1112222 3 36778887655432   2345799999998876421    


Q ss_pred             ---CCC-CEEEEcCCCCCcccccccc--c---cccc--cccccceEEEEEccc--C-CCCCCC-------CHHHHHHHhh
Q 010008          181 ---KPH-DRIMGLDLPHGGHLSHGFM--T---PKRR--VSGTSIYFESMPYRL--D-ESTGLV-------DYDMLEKTAI  239 (520)
Q Consensus       181 ---~pG-D~Vl~~~~~~~ghls~g~~--~---~~~~--v~~~g~~~~~v~~~~--d-~~~~~i-------D~d~le~~i~  239 (520)
                         +++ .+|+...-.|.|.- .+..  +   ..+.  .-..+  +..+++|.  . .+.+..       ..+++++.+.
T Consensus       154 ~~g~~~r~~ii~~~~~yHG~t-~~a~s~tg~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~  230 (473)
T 4e3q_A          154 AEGKPQKRKILTRWNAYHGVT-AVSASMTGKPYNSVFGLPLPG--FVHLTCPHYWRYGEEGETEEQFVARLARELEETIQ  230 (473)
T ss_dssp             HTTCTTCCEEEEETTCCCCSS-HHHHHHSCCGGGGGGTCSCTT--EEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCcceEEEeeceECCCc-cccccccccccccccCCCCCc--ccccCCCcccccccccchhhHHHHHHHHHHHHHHH
Confidence               344 46777765543321 0100  0   0000  00111  12222221  0 011111       1245555555


Q ss_pred             hcC---CcEEEEcCC-CCCC-----CCCHHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEeccCccc
Q 010008          240 LFR---PKLIIAGAS-AYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSL  307 (520)
Q Consensus       240 ~~~---pklIi~~~s-~~p~-----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S~hK~l  307 (520)
                      ...   .-+||+..- ...+     .--+++++++|+++|++||+|+.+. |+--.|.. . .-+. ..|+++.+  |.+
T Consensus       231 ~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~t-GfGRtG~~fa~e~~gv~PDi~t~~--K~l  307 (473)
T 4e3q_A          231 REGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVIC-GFGRTGNTWGCVTYDFTPDAIISS--KNL  307 (473)
T ss_dssp             HHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTT-SSSTTSSSCHHHHTTCCCSEEEEC--GGG
T ss_pred             hhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccc-cCCcccchhHHHhcCCCCChHHhc--ccc
Confidence            433   345666521 1222     2238999999999999999999853 43211110 0 0001 36899876  998


Q ss_pred             CC--CCceEEEeeCCCcchhhHHHhhccc-------CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 010008          308 RG--PRGGMIFFKKDPVLGVELESAINNA-------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA  378 (520)
Q Consensus       308 ~G--prgG~I~~~~~~~~~~~l~~~i~~~-------~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~  378 (520)
                      .|  ...|.+++++      ++.+.+...       ...++.++......+|++ .|+.+.++++   .+++.+..++|.
T Consensus       308 ~gG~~Pl~av~~~~------~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala-~L~~i~~~~l---~~~~~~~g~~l~  377 (473)
T 4e3q_A          308 TAGFFPMGAVILGP------ELSKRLETAIEAIEEFPHGFTASGHPVGCAIALK-AIDVVMNEGL---AENVRRLAPRFE  377 (473)
T ss_dssp             GTTSSCCEEEEECH------HHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHH-HHHHHHHSSH---HHHHHHHHHHHH
T ss_pred             cCCCCCcccccccH------HHHHHhccccccccccccCCCCCCCcchhhhhhh-hhhhhccccH---HHHHHHHHHHHH
Confidence            54  4568888887      565554321       112233443333333443 5666654443   455556677777


Q ss_pred             HHHHHC----CCEEecCCCCCeeEEEEecCCC-----CC-----HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEcc
Q 010008          379 SRLVEL----GYKLVSGGSDNHLVLVDLRPMG-----ID-----GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS  444 (520)
Q Consensus       379 ~~L~~~----G~~v~~~gt~~~~~~vd~~~~g-----~~-----~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~  444 (520)
                      +.|++.    .+.-+.+ . ..+.-+++....     .+     ...+.+.+.+.|+.+...          ...||+..
T Consensus       378 ~~L~~l~~~~~v~~vRG-~-Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----------g~~i~l~P  445 (473)
T 4e3q_A          378 ERLKHIAERPNIGEYRG-I-GFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPL----------GQSVVLCP  445 (473)
T ss_dssp             HHHHHHTTSTTEEEEEE-E-TTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEE----------TTEEEECC
T ss_pred             HHHHHHhcCCCeeEEee-c-ceEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEec----------CCEEEEeC
Confidence            777652    2211111 1 123334432110     11     345777888999988421          24789964


Q ss_pred             CCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          445 PAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       445 ~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      | ++   ++++|++++.+.+.++++..
T Consensus       446 P-L~---it~~eid~~~~~l~~al~~v  468 (473)
T 4e3q_A          446 P-FI---LTEAQMDEMFDKLEKALDKV  468 (473)
T ss_dssp             C-TT---CCHHHHHHHHHHHHHHHHHH
T ss_pred             C-CC---CCHHHHHHHHHHHHHHHHHH
Confidence            4 44   57999999999999988643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	520
d1rv3a_	470	c.67.1.4 (A:) Serine hydroxymethyltransferase {Rab	0.0
d2a7va1	463	c.67.1.4 (A:26-488) Serine hydroxymethyltransferas	1e-175
d1dfoa_	416	c.67.1.4 (A:) Serine hydroxymethyltransferase {Esc	1e-161
d1kl1a_	405	c.67.1.4 (A:) Serine hydroxymethyltransferase {Bac	1e-157
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	4e-48
d1ax4a_	465	c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas	5e-40
d1c4ka2	462	c.67.1.5 (A:108-569) Ornithine decarboxylase major	1e-37
d1c7ga_	456	c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi	1e-33
d1m6sa_	343	c.67.1.1 (A:) Low-specificity threonine aldolase {	1e-10
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	2e-07
d2e7ja1	364	c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (	3e-07

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 470

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  515 bits (1328), Expect = 0.0
 Identities = 274/463 (59%), Positives = 339/463 (73%), Gaps = 11/463 (2%)

Query: 68  SFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPG 127
             +   L ++D EV +II KE  RQ   LELIASENF SRAV+EA+GSCL NKYS G PG
Sbjct: 6   QMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPG 65

Query: 128 KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIM 187
           +RYYGG E+IDELETLCQKRAL A+ LD   WGVNVQP SGSPANF VYTA+++PH RIM
Sbjct: 66  QRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIM 125

Query: 188 GLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII 247
           GLDLP GGHL+HGFMT K+++S TSI+FESM Y+++  TG +DYD LE+ A LF PKLII
Sbjct: 126 GLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLII 185

Query: 248 AGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL 307
           AG S Y R+ DY R+R+IAD  GA LM DMAHISGLV A VV  PF++C VVTTTTHK+L
Sbjct: 186 AGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTL 245

Query: 308 RGPRGGMIFFKKD---------PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA 358
           RG R GMIF+++            +   LES IN+AVFPGLQGGPHNH I G+AV LK A
Sbjct: 246 RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQA 305

Query: 359 QSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDM 418
            +PEFK YQ +VV+NCRAL++ LVELGYK+V+GGSDNHL+LVDLR  G DG R EK+L+ 
Sbjct: 306 MTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEA 365

Query: 419 ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAK-KL 477
            SI  NKN+ PGDKSAL P G+R+G+PA+T+RG  EK+F  +A FIH G+E+T++ +   
Sbjct: 366 CSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDT 425

Query: 478 VQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 520
              + L++F   +   +      V  LR  VE+    FP+PG+
Sbjct: 426 GPRATLKEFKEKLAG-DEKHQRAVRALRQEVESFAALFPLPGL 467

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 463

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score =  499 bits (1286), Expect = e-175
 Identities = 274/456 (60%), Positives = 343/456 (75%), Gaps = 12/456 (2%)

Query: 73  SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 132
           SL ++DPE+ E++ +EK+RQ + LELIASENF SRA +EA+GSCL NKYSEG PGKRYYG
Sbjct: 7   SLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYG 66

Query: 133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 192
           G E +DE+E LCQ+RAL AF+LD  +WGVNVQP SGSPAN  VYTA+L+PHDRIMGLDLP
Sbjct: 67  GAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLP 126

Query: 193 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 252
            GGHL+HG+M+  +R+S TSI+FESMPY+L+  TGL+DY+ L  TA LFRP+LIIAG SA
Sbjct: 127 DGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSA 186

Query: 253 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 312
           Y R  DY RMR++ D V A L+ DMAHISGLVAA V+  PFK+ D+VTTTTHK+LRG R 
Sbjct: 187 YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARS 246

Query: 313 GMIFFKK-----DPVLGVEL----ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 363
           G+IF++K     DP  G E+    E  IN AVFP LQGGPHNH I  +AV LK A +P F
Sbjct: 247 GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMF 306

Query: 364 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITL 423
           + Y  +V+ N RA+A  L+E GY LVSGG+DNHLVLVDLRP G+DGAR E++L++ SIT 
Sbjct: 307 REYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITA 366

Query: 424 NKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKL 483
           NKN+ PGD+SA+ PGG+R+G+PA+T+R F E +F  + DFI EGV I LE K     +KL
Sbjct: 367 NKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKT--AKL 424

Query: 484 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 519
           QDF +F+   +      +A+LR RVE     FP+PG
Sbjct: 425 QDFKSFLLK-DSETSQRLANLRQRVEQFARAFPMPG 459

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} Length = 416

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

 Score =  463 bits (1192), Expect = e-161
 Identities = 199/448 (44%), Positives = 272/448 (60%), Gaps = 38/448 (8%)

Query: 71  DYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRY 130
           + ++ + D E+ + + +EK RQ + +ELIASEN+TS  VM+A GS LTNKY+EG PGKRY
Sbjct: 4   EMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRY 63

Query: 131 YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLD 190
           YGG EY+D +E L   RA   F         NVQP SGS ANF VYTA+L+P D ++G++
Sbjct: 64  YGGCEYVDIVEQLAIDRAKELFGA----DYANVQPHSGSQANFAVYTALLEPGDTVLGMN 119

Query: 191 LPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 250
           L HGGHL+HG       V+ +   +  +PY +D  TG +DY  LEK A   +PK+II G 
Sbjct: 120 LAHGGHLTHG-----SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGF 173

Query: 251 SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGP 310
           SAY    D+ +MR+IAD++GA L +DMAH++GLVAA V  +P  +  VVTTTTHK+L GP
Sbjct: 174 SAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGP 233

Query: 311 RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKV 370
           RGG+I  K       +    +N+AVFPG QGGP  H I G AV LK A  PEFK YQ +V
Sbjct: 234 RGGLILAKGGSEELYK---KLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQV 290

Query: 371 VSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG 430
             N +A+    +E GYK+VSGG+DNHL LVDL    + G   +  L  A+IT+NKNSVP 
Sbjct: 291 AKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPN 350

Query: 431 D-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNF 489
           D KS  V  GIR+G+PA+T RGF E E   +A ++ + ++   +   +            
Sbjct: 351 DPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDSINDEAVI------------ 398

Query: 490 VTSPNFSLMNNVADLRGRVEALTTQFPI 517
                         ++G+V  +  ++P+
Sbjct: 399 ------------ERIKGKVLDICARYPV 414

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 405

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  452 bits (1165), Expect = e-157
 Identities = 203/440 (46%), Positives = 266/440 (60%), Gaps = 40/440 (9%)

Query: 74  LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 133
           L + DP+V   I +E++RQ   +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG
Sbjct: 4   LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63

Query: 134 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 193
            EY+D +E L ++RA   F         NVQP SG+ AN  VY  +L+  D ++G++L H
Sbjct: 64  CEYVDIVEELARERAKQLFGA----EHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119

Query: 194 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 253
           GGHL+HG       V+ + + +  + Y +D  T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHGSP-----VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174

Query: 254 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 313
           PR  D+ + R+IAD VGA LM+DMAHI+GLVAA +  +P  Y   VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234

Query: 314 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 373
           MI  ++           I+ A+FPG+QGGP  H I   AV    A   +FK Y  +VV N
Sbjct: 235 MILCQEQ------FAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDN 288

Query: 374 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 432
            + LAS L   G+ LVSGG+DNHL+LVDLRP  + G   EK+LD   IT+NKN++P D +
Sbjct: 289 AKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPE 348

Query: 433 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTS 492
           S  V  GIRIG+ A+TTRGF  +E   IA  I   ++                       
Sbjct: 349 SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK----------------------- 385

Query: 493 PNFSLMNNVADLRGRVEALT 512
            N      + + R RV ALT
Sbjct: 386 -NVGSEQALEEARQRVAALT 404

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score =  170 bits (432), Expect = 4e-48
 Identities = 61/461 (13%), Positives = 125/461 (27%), Gaps = 82/461 (17%)

Query: 83  EIITKEKERQFKSLELIASEN---FTSRAVM------EAVGSCLTNKYSEGLPGKRYYGG 133
           E + +      +   + +  N     S  V          G+   +  +  + G   + G
Sbjct: 13  EPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSG 72

Query: 134 NEYIDELETLCQKRALAAFNLDENKWGVN--VQPLSGSPANFEVYTAILKPHDRIMGLDL 191
           +     L       ++         +G    +    G  A       ++K  ++  GLD 
Sbjct: 73  SRSYYALA-----ESVKNI------FGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDR 121

Query: 192 PHGGHLSHGFMTPKR---RVSGTS-----IYFESMPYRLDESTGLVDYDMLEKTAILFRP 243
                 S+ F    +   +++G +     I          +  G  D + LE+      P
Sbjct: 122 SKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGP 181

Query: 244 KLII---------AGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-------- 286
             +          +         +   M  IA      ++MD A  +             
Sbjct: 182 NNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEY 241

Query: 287 ------SVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQ 340
                  +  + +KY D++  +  K    P GG++  K D    V         +    +
Sbjct: 242 KDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVY---TECRTLCVVQE 298

Query: 341 GGPHNHTIGGLAVCLKHAQSPEF--KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLV 398
           G P    + G A+        +     +    ++  + L   L E    +V   +  H  
Sbjct: 299 GFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEE--IGVVCQQAGGHAA 356

Query: 399 LVDLRPMGID--------GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSP----- 445
            VD   +            A   ++  +A I   +            G            
Sbjct: 357 FVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRL 416

Query: 446 AMTTRGFSEKEFVAIADFIHE---------GVEITLEAKKL 477
            +    +++     I +             G+  T E K L
Sbjct: 417 TIPRATYTQTHMDFIIEAFKHVKENAANIKGLTFTYEPKVL 457

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

 Score =  148 bits (375), Expect = 5e-40
 Identities = 58/421 (13%), Positives = 118/421 (28%), Gaps = 74/421 (17%)

Query: 113 VGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN 172
             +   ++++  + G   Y G+    +L+     +A   FN D       +    G  A 
Sbjct: 53  TNAMSDHQWAAMITGDEAYAGSRNYYDLK----DKAKELFNYDYI-----IPAHQGRGAE 103

Query: 173 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESM------PYRLDEST 226
             ++  +LK   +      P      H   T              +          D+  
Sbjct: 104 NILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWK 163

Query: 227 GLVDYDMLEKTA---------ILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDM 277
           G  D   L++            +       +         +   + +IA   G  ++MD 
Sbjct: 164 GDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDS 223

Query: 278 AHISGLVA--------------ASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVL 323
           A                       V+ D +KY D +T +  K      GG++  + +  +
Sbjct: 224 ARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEI 283

Query: 324 GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPE--FKVYQNKVVSNCRALASRL 381
                  +       ++G      + G  +        E   + Y +  +   + L  RL
Sbjct: 284 FT-----LARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRL 338

Query: 382 VELGYKLVSGGSDNHLVLVDLRPMGID--------GARVEKILDMASITLNKNSVP---- 429
            E G  +       H V VD + +            A +  +   + +   +        
Sbjct: 339 REAGIPIQYPT-GGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGR 397

Query: 430 ----GDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE---------GVEITLEAKK 476
               G++       +R+       R ++      IAD +           G+E   E   
Sbjct: 398 DPATGEQKHADMEFMRLTIA---RRVYTNDHMDYIADALIGLKEKFATLKGLEFEYEPPV 454

Query: 477 L 477
           L
Sbjct: 455 L 455

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} Length = 462

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

 Score =  142 bits (357), Expect = 1e-37
 Identities = 55/417 (13%), Positives = 98/417 (23%), Gaps = 53/417 (12%)

Query: 93  FKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGN-------EYIDELETLC- 144
           FKSL+   S            G     K+  G     ++G              L  L  
Sbjct: 4   FKSLKEYVSRYLIQFDCPGHQGGQYYRKHPAGREFYDFFGETVFRADLCNADVALGDLLI 63

Query: 145 --------QKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGH 196
                   +K A   +N D+            S AN  V +A++   D ++     H   
Sbjct: 64  HEGPAVAAEKHAARVYNADK----TYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSV 119

Query: 197 LSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK----------LI 246
            +        R            +         D   + + A    P+           +
Sbjct: 120 YNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAV 179

Query: 247 IAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISG----------LVAASVVADPFKYC 296
           I   +     ++   + +    +   +  D A +                     P    
Sbjct: 180 IQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPG 239

Query: 297 DVVTTTTHKSLRGPRGGMIFFKKD----PVLGVELESAINNAVFPGLQGGPHNHTIGGLA 352
            +V  + HK   G        KKD      L        NN+    +   P       L 
Sbjct: 240 IIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALD 299

Query: 353 VCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-------GYKLVSGGSDNHLVLVDLRPM 405
           V     +    +   + ++        +L++           +V+G         D+   
Sbjct: 300 VNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANN 359

Query: 406 GIDGARVEKILDMASITLNKNSVPGD--KSALVPGGIRIGSPAMTTRGFSEKEFVAI 460
                  +     A      N    D  K  L   GI   +      G         
Sbjct: 360 IDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANY 416

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

 Score =  131 bits (329), Expect = 1e-33
 Identities = 58/407 (14%), Positives = 105/407 (25%), Gaps = 71/407 (17%)

Query: 121 YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVN--VQPLSGSPANFEVYTA 178
           ++  + G   Y G+E    LE     + +         +G    V    G  A   +   
Sbjct: 61  WAGMMIGDEAYAGSENFYHLE-----KTVKEL------FGFKHIVPTHQGRGAENLLSQL 109

Query: 179 ILKPHDRIMG---LDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLE 235
            +KP   + G             +G                          G +D + L 
Sbjct: 110 AIKPGQYVAGNMYFTTTRFHQEKNGA-----TFVDIVRDEAHDASLNLPFKGDIDLNKLA 164

Query: 236 K---------TAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHIS----- 281
                      A +     +           +   + ++A   G  +  D          
Sbjct: 165 TLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYF 224

Query: 282 ---------GLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAIN 332
                     +    +V + F Y D  T +  K      GG +    D  +    +  + 
Sbjct: 225 IKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCM-NDEEMFSAAKELVV 283

Query: 333 NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG 392
                   GG     +  +A+ L+ A   E   Y    V   R L  +L E G  +V   
Sbjct: 284 VYEGMPSYGGLAGRDMEAMAIGLREAMQYE---YIEHRVKQVRYLGDKLREAGVPIVEPT 340

Query: 393 SDNHLVLVDLRPM--------GIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS 444
              H V +D R              +    I     +   +  +     +   G      
Sbjct: 341 -GGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPK 399

Query: 445 P-----AMTTRGFSEKEFVAIADFIHE---------GVEITLEAKKL 477
                  +  R ++      +AD I +         G+    E K+L
Sbjct: 400 LETVRLTIPRRVYTYAHMDVVADGIIKLYQHKEDIRGLTFVYEPKQL 446

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

 Score = 60.6 bits (145), Expect = 1e-10
 Identities = 58/357 (16%), Positives = 110/357 (30%), Gaps = 42/357 (11%)

Query: 100 ASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDEN 157
            S+  T  +  + +A+        ++   G   YG +  I+ELE     R  A       
Sbjct: 5   RSDTVTKPTEEMRKAM--------AQAEVGDDVYGEDPTINELE-----RLAAET---FG 48

Query: 158 KWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES 217
           K      P SG+  N     A  +  D ++     H      G M     V    +  ++
Sbjct: 49  KEAALFVP-SGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKN 107

Query: 218 MPYRLDESTGLVDYDMLE--KTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMM 275
                D+    +    +   +T+++                 +   +  IA   G  + +
Sbjct: 108 GAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHI 167

Query: 276 DMAHISGLVAASVV--ADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINN 333
           D A I     AS V   +   Y D V     K L  P G ++   +D             
Sbjct: 168 DGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRD----------FIE 217

Query: 334 AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS 393
                 +         G+          +      +   N R LA +L E+GY +     
Sbjct: 218 RARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDV 277

Query: 394 DNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTR 450
             ++V++    + ++     + L  + +  N         A+    IR+ +    +R
Sbjct: 278 KTNMVILRTDNLKVNAHGFIEALRNSGVLAN---------AVSDTEIRLVTHKDVSR 325

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 51.5 bits (122), Expect = 2e-07
 Identities = 46/307 (14%), Positives = 91/307 (29%), Gaps = 39/307 (12%)

Query: 133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 192
           G   +  L     +       L+ +       P+S   +     +A  K +   + +   
Sbjct: 107 GASIMYALTNKILESFFKQLGLNVHAIAT---PISTGMSISLCLSAARKKYGSNVVI--- 160

Query: 193 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEK-----TAILFRPKLII 247
              + SH          G ++    +   LD     V  + +E        +  RP ++ 
Sbjct: 161 -YPYASHKSPIKAVSFVGMNMRL--VETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLS 217

Query: 248 AGASAYPRD-FDYPRMRQIADAVGALLMMDMAHISGLVAAS--VVADPFKYCDVVTTTTH 304
                 PR+  D   + +I +      +++ A+          +        D V +++ 
Sbjct: 218 TLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSD 277

Query: 305 KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 364
           K+L  P GG + +  D              +     G      +    V L    S  + 
Sbjct: 278 KNLLTPIGGGLVYSTDA--------EFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYL 329

Query: 365 VYQNKVVSNCRALASRLVEL----GYKL----------VSGGSDNHLVLVDLRPMGIDGA 410
                  ++ + L   L +L    G K           +S  SD   +   L  + + G 
Sbjct: 330 ELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGP 389

Query: 411 RVEKILD 417
           R  K  D
Sbjct: 390 RGIKKTD 396

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 50.2 bits (118), Expect = 3e-07
 Identities = 56/385 (14%), Positives = 120/385 (31%), Gaps = 31/385 (8%)

Query: 92  QFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELET--LCQK--R 147
            F +++ + +    +    +A+      ++ +G     +      +DE++T  +      
Sbjct: 1   DFINIDPLQTGGKLTEEARQAL-----LEWGDGYSVCDFCTTG-RLDEIKTPPIHDFIHN 54

Query: 148 ALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRR 207
            L  F          V       A F V  ++ K    ++  +  H              
Sbjct: 55  QLPKF---LGCDVARVTN-GAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNI 110

Query: 208 VSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIAD 267
                  +       +     ++        +L    LI      Y    D  ++ ++  
Sbjct: 111 ALVPKTDYPDYAITPENFAQTIEETKKRGEVVLA---LITYPDGNYGNLPDVKKIAKVCS 167

Query: 268 AVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVEL 327
                L+++ A+  G +  S+        D +  + HKS+       +   K+    + L
Sbjct: 168 EYDVPLLVNGAYAIGRMPVSL---KEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVL 224

Query: 328 ESAIN--NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG 385
             +    N     L       TI  L     H +  E     ++ V   R  A+ + +LG
Sbjct: 225 RRSEKYKNKEVELLGCTARGATIITLMASFPHVR--ERIKRWDEEVEKARRFAAEMEKLG 282

Query: 386 YKLVSGGSDNHLVLVDLRPMGID-GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS 444
            K +     NH ++     +  +   + +         L    + G K    PG  R   
Sbjct: 283 IKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIK----PGLTRYFK 338

Query: 445 PAMTTRGFSEKEFVAIADFIHEGVE 469
             ++T G S++E   + +   E +E
Sbjct: 339 --LSTYGLSDEEVDYVLNAFKEIIE 361

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	520
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	100.0
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	100.0
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	100.0
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	100.0
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.96
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.96
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.96
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.96
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.96
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.95
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.95
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.95
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.94
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.94
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.94
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.94
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.93
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.93
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.93
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.93
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.93
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.93
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.93
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.92
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.92
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.92
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.91
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.91
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.91
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.91
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.91
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.91
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.9
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.9
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.9
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.9
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.9
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.89
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.89
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.89
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.89
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.89
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.89
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.88
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.88
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.88
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.87
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.87
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.86
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.85
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.85
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.85
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.83
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.83
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.83
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.82
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.82
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.82
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.81
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.81
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.81
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.8
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.76
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.75
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.75
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.75
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.74
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.74
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.72
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.71
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.71
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.7
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.69
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.68
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.65
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.54
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	99.51
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	99.38
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.36
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.36
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.29
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.2
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.17
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.06
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	98.98
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	98.94

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=3.9e-102  Score=803.44  Aligned_cols=453  Identities=60%  Similarity=1.009  Sum_probs=427.3

Q ss_pred             cchhhhhccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHH
Q 010008           67 SSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQK  146 (520)
Q Consensus        67 ~~~~~~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~  146 (520)
                      +.++++.|++.|||++++|++|.+||+++|+||||||++|+.|+++++|.|+|||+|||||+|||+||+++|++|.+|++
T Consensus         5 ~~~~~~~l~~~D~ei~~~i~~e~~rq~~~l~LIaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~   84 (470)
T d1rv3a_           5 EQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQK   84 (470)
T ss_dssp             HHHTTSCHHHHCHHHHHHHHHHHHHHHSSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHH
T ss_pred             HHHHhhhHhhhCHHHHHHHHHHHHHHHcCceEecCCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHH
Confidence            35567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCC
Q 010008          147 RALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST  226 (520)
Q Consensus       147 ~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~  226 (520)
                      +++++||++++.|.+|||++||+.||++++.||++|||+||.+++++|||++||+.+....+++.+.+|+.+.|++++++
T Consensus        85 ra~~lF~~~~~~~~anVqp~SGs~An~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~  164 (470)
T d1rv3a_          85 RALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDT  164 (470)
T ss_dssp             HHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTT
T ss_pred             HHHHHhCCChhhccccccccCCccHHHHHHHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEeccc
Confidence            99999999988899999999999999999999999999999999999999999998877788999999999999999999


Q ss_pred             CCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcc
Q 010008          227 GLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKS  306 (520)
Q Consensus       227 ~~iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~  306 (520)
                      +.||+|++++.++.+|||+||++.|+||+.+|++++++||+++|++|++|+||.+|||+.+++++|++++|||++|||||
T Consensus       165 ~~IDyd~l~~~a~~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~~aDvvt~tTHKt  244 (470)
T d1rv3a_         165 GYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKT  244 (470)
T ss_dssp             CSBCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGG
T ss_pred             CcccHHHHHHHHHhhCcceEeechhhccccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChhheeeeeeeehhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceEEEeeCCC---------cchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 010008          307 LRGPRGGMIFFKKDP---------VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL  377 (520)
Q Consensus       307 l~GprgG~I~~~~~~---------~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l  377 (520)
                      |+|||||+|+++++.         ...+++.++|++++||++||+||+|.|||+|+||+++++++|++|++++++|++.|
T Consensus       245 lrGPrgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~L  324 (470)
T d1rv3a_         245 LRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRAL  324 (470)
T ss_dssp             GCCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcceEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            999999999999752         11235889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHH
Q 010008          378 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEF  457 (520)
Q Consensus       378 ~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~  457 (520)
                      ++.|.+.|++++++||++|++++|+++.++++..+++.|+++||.+|+|++|+|.+++.++||||||+++|+|||+++||
T Consensus       325 a~~L~~~G~~v~~ggTdnHlvlvdl~~~g~~g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~~e~dm  404 (470)
T d1rv3a_         325 SAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDF  404 (470)
T ss_dssp             HHHHHHTTCEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHH
T ss_pred             HHHHHhCCceeccCCCCCceEEEeecccCCcHHHHHHHHHHcCcEECCCcCCCCCCCCCCCeeEecCHHHHhCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999998899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcc-cchhhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCCC
Q 010008          458 VAIADFIHEGVEITLEAKKLVQG-SKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV  520 (520)
Q Consensus       458 ~~la~~i~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~~~  520 (520)
                      ++++++|.++++..++++.+.+. .++++|++.+..+. .....+++||++|.+||++||+|||
T Consensus       405 ~~iA~~I~~~l~~~~~~~~~~g~~~~~~ef~~~~~~~~-~~~~~i~~lr~eV~~l~~~FPlPg~  467 (470)
T d1rv3a_         405 QKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDE-KHQRAVRALRQEVESFAALFPLPGL  467 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHSCH-HHHHHHHHHHHHHHHHHTTSCCCSS
T ss_pred             HHHHHHHHHHHHHHHhhhhcccchhhHHHHHHHhhccc-ccHHHHHHHHHHHHHHHHcCCCCCC
Confidence            99999999999999999877632 34789988886543 1124689999999999999999986

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=7.9e-102  Score=798.47  Aligned_cols=447  Identities=60%  Similarity=1.027  Sum_probs=381.6

Q ss_pred             hhhccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHH
Q 010008           71 DYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALA  150 (520)
Q Consensus        71 ~~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~  150 (520)
                      ++.|++.|||++++|.+|.+||+++|+||||||++|+.|+++++|.|+|||+|||||+|||+||+++|++|.+|++++++
T Consensus         5 ~~~L~~~D~ei~~~i~~e~~rq~~~l~LiaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~   84 (463)
T d2a7va1           5 QESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALE   84 (463)
T ss_dssp             CCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHH
T ss_pred             cCchhhhCHHHHHHHHHHHHHHhcCeeEeccCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCC
Q 010008          151 AFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVD  230 (520)
Q Consensus       151 lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD  230 (520)
                      +||+++++|++|||++||+.||++++.+|++|||+||.+++++|||+|||+......+++.|.+|+.++|++|++++.||
T Consensus        85 lF~~~~a~w~vNVqp~SGs~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~ID  164 (463)
T d2a7va1          85 AFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLID  164 (463)
T ss_dssp             HTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBC
T ss_pred             HhCCCchhccCCccccccHHHHHHHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCc
Confidence            99999999999999999999999999999999999999999999999999877666788999999999999998899999


Q ss_pred             HHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCC
Q 010008          231 YDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGP  310 (520)
Q Consensus       231 ~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gp  310 (520)
                      +|+++++++++|||+||++.|+||+.+|++++++||+++|++|++|+||.+|||+.+++++|++++|||++||||||+||
T Consensus       165 yd~~~~~a~~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~aDvvt~tTHKTlrGP  244 (463)
T d2a7va1         165 YNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGA  244 (463)
T ss_dssp             HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCSC
T ss_pred             HHHHHHHHhhcCCceEEecccccccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhhhhhhhchhhhhhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEeeCCCc---------chhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 010008          311 RGGMIFFKKDPV---------LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRL  381 (520)
Q Consensus       311 rgG~I~~~~~~~---------~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L  381 (520)
                      |||+|+++++..         ..+++.++|++++||++||+||+|.|||+++||+++++++|++|++|+++|++.|++.|
T Consensus       245 rgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L  324 (463)
T d2a7va1         245 RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADAL  324 (463)
T ss_dssp             SCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence            999999998420         12367889999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHH
Q 010008          382 VELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA  461 (520)
Q Consensus       382 ~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la  461 (520)
                      .+.|++++++||++|++++|+++.++++..+++.|+++||.+|+|++|+|.+++.++||||||+++|+|||+++||++++
T Consensus       325 ~~~G~~vv~ggTdnHlvlvdl~~~~~~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~e~dm~~iA  404 (463)
T d2a7va1         325 LERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVV  404 (463)
T ss_dssp             HHTTCEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHH
T ss_pred             HhCCCeeecCCCCCceeeeeccccCCCHHHHHHHHHhccCccCCccCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCCC
Q 010008          462 DFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV  520 (520)
Q Consensus       462 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~~~  520 (520)
                      ++|.++++...++|+++ + ++++|+..+..+. ....++++||++|.+||++||+|||
T Consensus       405 ~~I~~~l~~~~~~~~~~-~-~~~df~~~~~~~~-~~~~~i~~lr~~V~~l~~~fP~pg~  460 (463)
T d2a7va1         405 DFIDEGVNIGLEVKSKT-A-KLQDFKSFLLKDS-ETSQRLANLRQRVEQFARAFPMPGF  460 (463)
T ss_dssp             HHHHHHHHHHHHHHHHC-C-SHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHTTSCCSSC
T ss_pred             HHHHHHHHHhhhhhhhh-h-hhHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHhCCCCCC
Confidence            99999999999998776 4 6789887663321 0113689999999999999999997

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.6e-96  Score=747.42  Aligned_cols=411  Identities=49%  Similarity=0.796  Sum_probs=391.3

Q ss_pred             hhccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 010008           72 YSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA  151 (520)
Q Consensus        72 ~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~l  151 (520)
                      ..|.+.|||++++|++|..||+++|+||||||++|+.|+++++|.|+|||+|||||+|||+||+++|++|.+|+++++++
T Consensus         5 ~~l~~~D~ei~~~i~~e~~rq~~~i~LiaSEN~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~l   84 (416)
T d1dfoa_           5 MNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKEL   84 (416)
T ss_dssp             CCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CChhhcCHHHHHHHHHHHHHHHcCceEecCcccCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCH
Q 010008          152 FNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY  231 (520)
Q Consensus       152 fg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~  231 (520)
                      ||+++    +|||++||+.||+++++||++|||+||.+++++|||++||+     .+++.|.+|+.++|++| +++.||+
T Consensus        85 F~a~~----anVqp~SGs~AN~av~~All~pGD~Il~l~l~~GGHlshg~-----~~~~~g~~~~~~~y~~d-~~~~IDy  154 (416)
T d1dfoa_          85 FGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGS-----PVNFSGKLYNIVPYGID-ATGHIDY  154 (416)
T ss_dssp             HTCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGTC-----TTSHHHHHSEEEEECBC-SSSSBCH
T ss_pred             hCCCc----ceeecccCccHHHHHHHHhcCCCCeeeeccccccccccccc-----cccccCceEEEEecccC-CccCccH
Confidence            99976    69999999999999999999999999999999999999997     67889999999999998 4788999


Q ss_pred             HHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCC
Q 010008          232 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPR  311 (520)
Q Consensus       232 d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gpr  311 (520)
                      |++++.++.+|||+|+++.|+||+.+|++++++||+++|++|++|+||++|+++.+++++|++++|+|++||||||+|||
T Consensus       155 d~l~~~a~~~kPklIi~G~S~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~aDvvt~tThKtlrGPr  234 (416)
T d1dfoa_         155 ADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPR  234 (416)
T ss_dssp             HHHHHHHHHHCCSEEEEECSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTTSSEEEEESSSTTCCCS
T ss_pred             HHHHHHHHHhccceEEecccccccccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCcccccceeeeehhhcccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecC
Q 010008          312 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG  391 (520)
Q Consensus       312 gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~  391 (520)
                      ||+|+++++.   .++.++|++++||++||+|++|.+||++++|+++++++|++|++|+++|++.|++.|.+.|++++++
T Consensus       235 ggiI~~~~~~---~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G~~iv~g  311 (416)
T d1dfoa_         235 GGLILAKGGS---EELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSG  311 (416)
T ss_dssp             CEEEEESSCC---HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGG
T ss_pred             ceEEEeccch---HhHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhCCcccccC
Confidence            9999998531   1678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          392 GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       392 gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      ||++|++++|+++.++++.++++.|+++||.||+|++|+|. +++.++||||||+++|||||+++||++++++|.++++.
T Consensus       312 gTdnHlvlvdl~~~~~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~  391 (416)
T d1dfoa_         312 GTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS  391 (416)
T ss_dssp             SCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred             CCCCceeEEEecccCCCHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999997 88999999999999999999999999999999999874


Q ss_pred             HHHHHHhhcccchhhhhcccCCCCccchHHHHHHHHHHHHHHhhCCCCC
Q 010008          471 TLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG  519 (520)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~fp~~~  519 (520)
                      .                    +++    ..+++||++|.+||++||++.
T Consensus       392 ~--------------------~~~----~~~~~ir~~V~~l~~~fPly~  416 (416)
T d1dfoa_         392 I--------------------NDE----AVIERIKGKVLDICARYPVYA  416 (416)
T ss_dssp             T--------------------TCH----HHHHHHHHHHHHHHHHSCSBC
T ss_pred             C--------------------CcH----HHHHHHHHHHHHHHHcCCCCC
Confidence            2                    122    368999999999999999863

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=2e-95  Score=739.18  Aligned_cols=403  Identities=50%  Similarity=0.816  Sum_probs=386.9

Q ss_pred             hhccccChHHHHHHHHHHHHhhccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 010008           72 YSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA  151 (520)
Q Consensus        72 ~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~l  151 (520)
                      +.|.+.|||++++|++|.+||+++|+||||||++||.|+++++|.|+|||+|||||+|||+||+++|++|.+|+++++++
T Consensus         2 ~~l~~~D~ei~~~i~~e~~rq~~~l~LiaSEN~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~l   81 (405)
T d1kl1a_           2 KYLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQL   81 (405)
T ss_dssp             CHHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhCHHHHHHHHHHHHHHHcCceEeccCCcCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCH
Q 010008          152 FNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY  231 (520)
Q Consensus       152 fg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~  231 (520)
                      ||+++    +|||++||+.||++++.||++|||+||.+++++|||++||.     +++..|.+++++.|++|++++.||+
T Consensus        82 F~a~~----anVqp~SGs~An~av~~all~pGD~im~l~l~~GGHlshg~-----~~~~~g~~~~~~~y~~d~~~~~ID~  152 (405)
T d1kl1a_          82 FGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGS-----PVNFSGVQYNFVAYGVDPETHVIDY  152 (405)
T ss_dssp             HCCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTC-----TTSHHHHHSEEEEECBCTTTCSBCH
T ss_pred             hCCCc----ceeeccCchHHHHHHHHHhcCCCCEEEEeecccccccccCc-----cccccceEEEEEEeccchhcccccH
Confidence            99976    69999999999999999999999999999999999999996     6778899999999999999999999


Q ss_pred             HHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCC
Q 010008          232 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPR  311 (520)
Q Consensus       232 d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gpr  311 (520)
                      |+++++++.+|||+||++.|+||+.+|++++++||+++|++|++|+||.+||++.+++++|++++|+|++||||||+|||
T Consensus       153 d~l~~~a~~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~aDvvt~tThKtlrGPr  232 (405)
T d1kl1a_         153 DDVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPR  232 (405)
T ss_dssp             HHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCS
T ss_pred             HHHHHHHHhhCcceEEecccccccccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhhhhhheeccccccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecC
Q 010008          312 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG  391 (520)
Q Consensus       312 gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~  391 (520)
                      ||+|++++      ++.++|++++||++||+|++|.|||++++|+++++++|++|++++++|++.|++.|.+.|++++++
T Consensus       233 gg~I~~~~------~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G~~vv~g  306 (405)
T d1kl1a_         233 GGMILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSG  306 (405)
T ss_dssp             CEEEEECH------HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGG
T ss_pred             CceEEecc------hhHHHHHhhhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCceeecC
Confidence            99999998      899999999999999999999999999999999889999999999999999999999999999999


Q ss_pred             CCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          392 GSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       392 gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      ||++|++++|+++.++++..+++.|+++||.+|+|++|+|. +++.++||||||+++|+|||+++||++++++|.++++.
T Consensus       307 gTd~H~vlvdl~~~~~~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~~  386 (405)
T d1kl1a_         307 GTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKN  386 (405)
T ss_dssp             SCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred             CCccceeeccccccCCcHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999997 88999999999999999999999999999999999864


Q ss_pred             HHHHHHhhcccchhhhhcccCCCCccchHHHHHHHHHHHHHHh
Q 010008          471 TLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTT  513 (520)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  513 (520)
                      .                    +++    ..++++|++|.+||.
T Consensus       387 ~--------------------~~~----~~~~~ir~~V~~L~~  405 (405)
T d1kl1a_         387 V--------------------GSE----QALEEARQRVAALTD  405 (405)
T ss_dssp             T--------------------TCH----HHHHHHHHHHHHHHC
T ss_pred             C--------------------CcH----HHHHHHHHHHHHhhC
Confidence            2                    122    368899999999984

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=7.1e-29  Score=255.03  Aligned_cols=357  Identities=18%  Similarity=0.147  Sum_probs=238.8

Q ss_pred             hhhccccChHHHHHHH-HHHHHhh---ccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHH
Q 010008           71 DYSLGEADPEVCEIIT-KEKERQF---KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLC  144 (520)
Q Consensus        71 ~~~l~~~d~~~~~~~~-~e~~~~~---~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a  144 (520)
                      .+++..+.|.....+. +..+.+.   +.|+|..+++  ++|+.|++++...+.+.. .+|+..   .|.   .++.+..
T Consensus         5 ~~r~~~~~~s~~~~i~~~a~~~~~~G~~vi~l~~g~p~~~~p~~i~~a~~~~~~~~~-~~Y~~~---~G~---~~lR~~i   77 (382)
T d1b5pa_           5 SRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGK-TKYAPP---AGI---PELREAL   77 (382)
T ss_dssp             CHHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTC-CSCCCT---TCC---HHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhCCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCC-cCCCCC---CCC---HHHHHHH
Confidence            4556666666443333 2222233   4588877775  478999999988876543 355431   232   3555556


Q ss_pred             HHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccC
Q 010008          145 QKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD  223 (520)
Q Consensus       145 ~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d  223 (520)
                      .+++.+.+|.+.+.  -+|.+|+|+ +|+..++.++++|||.|++++|.|.++..        .+...|.  +++.++++
T Consensus        78 a~~~~~~~~~~~~~--~~i~it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~--------~~~~~g~--~~~~v~~~  145 (382)
T d1b5pa_          78 AEKFRRENGLSVTP--EETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPE--------MVRFAGG--VVVEVETL  145 (382)
T ss_dssp             HHHHHHTTCCCCCG--GGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHTTC--EEEEEECC
T ss_pred             Hhhhhhhccccccc--ccceecCCHHHHHHHHHHHhCCCCCEEEECCCCcHHHHH--------HHHHhcC--eEEEEecc
Confidence            67887777765321  256678887 99999999999999999999998765431        2344565  56666655


Q ss_pred             CC-CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC---
Q 010008          224 ES-TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK---  294 (520)
Q Consensus       224 ~~-~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~---  294 (520)
                      ++ ++.+|++++++.+++ ++++++++.|+||+  .+   ++++|.++|+++|++||+|++| ..+.+.+....+..   
T Consensus       146 ~~~~~~~d~~~l~~~~~~-~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~  223 (382)
T d1b5pa_         146 PEEGFVPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIY-EHLLYEGEHFSPGRVAP  223 (382)
T ss_dssp             GGGTTCCCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT-TTCBSSSCCCCGGGTCT
T ss_pred             cccccCCCHHHHHHhCCC-CCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccc-cceecCCCCCCHHHcCC
Confidence            43 468999999999987 89999999999997  44   4678888999999999999984 56665554433332   


Q ss_pred             cccEEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHH--HhcCchhHHHHHHH
Q 010008          295 YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK--HAQSPEFKVYQNKV  370 (520)
Q Consensus       295 ~aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~--~~~~~~~~~~~~~i  370 (520)
                      .-.+++.|++|++  +|+|.||+++++      ++.+.+.........+.+...+.++.+ ++.  .........+.+.+
T Consensus       224 ~~~i~~~s~SK~~~~~GlR~G~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  296 (382)
T d1b5pa_         224 EHTLTVNGAAKAFAMTGWRIGYACGPK------EVIKAMASVSRQSTTSPDTIAQWATLE-ALTNQEASRAFVEMAREAY  296 (382)
T ss_dssp             TTEEEEEESTTTTTCGGGCCEEEECCH------HHHHHHHHHHHTTTCSCCHHHHHHHHH-HHHCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEecchhhccCcHhheEEEEECH------HHHHHHHHHHHhcccCccccccccccc-ccccccchhHHHHHHHHHH
Confidence            1237889999986  789999999987      565555432222223333333333222 221  11111224455666


Q ss_pred             HHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCcccc
Q 010008          371 VSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTR  450 (520)
Q Consensus       371 ~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~  450 (520)
                      ..+++.+.+.+...|+.+..+ ..++++|+++.+.+.+...+.+.|.++||.+    .||+.. ..++++||++.     
T Consensus       297 ~~~~~~~~~~l~~~g~~~~~p-~gg~~~~~~~~~~~~~~~~~~~~l~e~gV~v----~PG~~F-~~~~~iRis~~-----  365 (382)
T d1b5pa_         297 RRRRDLLLEGLTALGLKAVRP-SGAFYVLMDTSPIAPDEVRAAERLLEAGVAV----VPGTDF-AAFGHVRLSYA-----  365 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCBCCC-SBTTEEEEECTTTCSSHHHHHHHHHHTTEEC----EESGGG-TCTTEEEEECC-----
T ss_pred             HhhhhHHHHHHhhcCCeEecC-CceEEEeEeCCCCCCCHHHHHHHHHHCCEEE----EeCccc-CCCCeEEEEEc-----
Confidence            777888888888888887654 3457788898776777788888899999999    455431 13578999863     


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 010008          451 GFSEKEFVAIADFIHEG  467 (520)
Q Consensus       451 g~~~~d~~~la~~i~~~  467 (520)
                       .+++++++..++|.++
T Consensus       366 -~~~e~l~~al~rl~~~  381 (382)
T d1b5pa_         366 -TSEENLRKALERFARV  381 (382)
T ss_dssp             -SCHHHHHHHHHHGGGG
T ss_pred             -CCHHHHHHHHHHHHHh
Confidence             2467777777776654

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.96  E-value=2.5e-28  Score=251.00  Aligned_cols=341  Identities=13%  Similarity=0.102  Sum_probs=230.5

Q ss_pred             hhccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH
Q 010008           92 QFKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS  169 (520)
Q Consensus        92 ~~~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs  169 (520)
                      .++.|+|..+++  ++|+.|++++.+.+.+.. .+|+.   ..|   ..++.+...+++.+..+...... -+|.+++|+
T Consensus        24 ~~dvi~l~~g~p~~~~p~~v~~~~~~a~~~~~-~~Y~~---~~G---~~~lr~aia~~~~~~~~~~~~~~-~~i~~t~G~   95 (388)
T d1gdea_          24 MKDVISLGIGEPDFDTPQHIKEYAKEALDKGL-THYGP---NIG---LLELREAIAEKLKKQNGIEADPK-TEIMVLLGA   95 (388)
T ss_dssp             CTTCEECCCCSCCSCCCHHHHHHHHHHHHTTC-CSCCC---TTC---CHHHHHHHHHHHHHHHCCCCCTT-TSEEEESST
T ss_pred             CCCeEECCCCCCCCCCCHHHHHHHHHHHhcCc-cCCCC---CcC---CHHHHHHHHHHHHhhccccCCCh-heeeeccCc
Confidence            457899988875  478999999998887543 24543   112   23555555567776666532111 256678888


Q ss_pred             -HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEEE
Q 010008          170 -PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLII  247 (520)
Q Consensus       170 -~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklIi  247 (520)
                       +++..++.++++|||+|++++|.|.++..        .+...|.  +++.++++++ ++.+|+++|++.+++ ++++++
T Consensus        96 ~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~  164 (388)
T d1gdea_          96 NQAFLMGLSAFLKDGEEVLIPTPAFVSYAP--------AVILAGG--KPVEVPTYEEDEFRLNVDELKKYVTD-KTRALI  164 (388)
T ss_dssp             THHHHHHHTTTCCTTCEEEEEESCCTTHHH--------HHHHHTC--EEEEEECCGGGTTCCCHHHHHHHCCT-TEEEEE
T ss_pred             chHHHHHHHHhcCCCCEEEECCCCcHHHHH--------HHHHcCC--EEEEeecccccCCCCCHHHHHHhCcc-CCeEEE
Confidence             89999999999999999999998865432        2344555  6666666543 468999999999987 899999


Q ss_pred             EcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC------cccEEEeccCccc--CCCCceE
Q 010008          248 AGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK------YCDVVTTTTHKSL--RGPRGGM  314 (520)
Q Consensus       248 ~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~------~aDiv~~S~hK~l--~GprgG~  314 (520)
                      ++.|+||+  ..   ++++|.++|+++|++||+|++| ..+...+....++.      .-.+++.|++|++  +|+|.||
T Consensus       165 ~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~  243 (388)
T d1gdea_         165 INSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVY-EHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGF  243 (388)
T ss_dssp             EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT-TTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEE
T ss_pred             ECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCC-hhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEEE
Confidence            99999997  43   4778889999999999999995 44444432222221      1237889999986  7899999


Q ss_pred             EEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCC
Q 010008          315 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-SPEFKVYQNKVVSNCRALASRLVELGYKLVSGGS  393 (520)
Q Consensus       315 I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~-~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt  393 (520)
                      +++++      ++.+.+.........+.+...+. +.+.+++.-. ........+.+.++.+.+.+.|...++....+ .
T Consensus       244 ii~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p-~  315 (388)
T d1gdea_         244 VAAPS------WIIERMVKFQMYNATCPVTFIQY-AAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKP-K  315 (388)
T ss_dssp             EECCH------HHHHHHHHHHHTTTCSCCHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC-C
T ss_pred             EEeec------cchhhhhhccccccccccccchh-hHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhccccccCC-C
Confidence            99988      56555544333332333333332 2233332110 01234555666777788888888888776654 2


Q ss_pred             CCeeEEEEecCCCCCHHHHH-HHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          394 DNHLVLVDLRPMGIDGARVE-KILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       394 ~~~~~~vd~~~~g~~~~~~~-~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      .+.++|+++...+.+..++. ++|++.||.+    .||.. +...++++||++.      .+++++++..+.|.++++.
T Consensus       316 gg~fl~~~l~~~~~~~~~~~~~ll~e~gV~v----~PG~~F~~~~~~~iRis~~------~~~e~l~~al~rL~~~l~e  384 (388)
T d1gdea_         316 GAFYIFPRIRDTGLTSKKFSELMLKEARVAV----VPGSAFGKAGEGYVRISYA------TAYEKLEEAMDRMERVLKE  384 (388)
T ss_dssp             BTTEECCBCGGGTCCHHHHHHHHHHHTCEEC----EEGGGGCGGGTTBEEEECC------SCHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCCHHHHHHHHHHhCCEEE----EechhhCCCCCCEEEEEec------CCHHHHHHHHHHHHHHHHh
Confidence            35667888876667776654 5678899999    45543 2234678999863      2478899999999888874

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.7e-27  Score=246.85  Aligned_cols=345  Identities=17%  Similarity=0.118  Sum_probs=241.8

Q ss_pred             ceEe-cCCCCChHHHHHHHhhhhhccCCCCCCCC-CCCCcchhHHHHHHHHHHHHHHHcCCCC-CCCceeeecCChHHHH
Q 010008           96 LELI-ASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQPLSGSPAN  172 (520)
Q Consensus        96 i~Li-asen~~~~~V~ea~~s~l~~~y~~G~p~~-ryy~g~~~~d~lE~~a~~~~~~lfg~~~-~~~~~~V~~~sGs~A~  172 (520)
                      +-|. ++.+++|+.|++++...+.+.|  +.|+. .++.+.+..+.+| .+++.+++++|+.. +++   +.+.+.|+++
T Consensus        24 iYld~a~~~~~p~~v~~~~~~~~~~~~--~n~~~~~~~~~~~~~~~~e-~~R~~ia~~l~~~~~~~i---~~~~~~T~~~   97 (405)
T d1jf9a_          24 AYLDSAASAQKPSQVIDAEAEFYRHGY--AAVHRGIHTLSAQATEKME-NVRKRASLFINARSAEEL---VFVRGTTEGI   97 (405)
T ss_dssp             EECCTTTCCCCCHHHHHHHHHHHHHTC--CCCSSCSSHHHHHHHHHHH-HHHHHHHHHTTCSCGGGE---EEESSHHHHH
T ss_pred             EEEeCccccCCCHHHHHHHHHHHHhcc--CCCccchhHHHHHHHHHHH-HHHHHHHHHcCCCCcccc---cccCcHHHHH
Confidence            4554 4567899999999999888765  34542 2333444445555 67899999999764 432   3334556888


Q ss_pred             HHHHHh----hCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEE
Q 010008          173 FEVYTA----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA  248 (520)
Q Consensus       173 ~~~l~a----ll~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~  248 (520)
                      ..++.+    .+++||+|++.+.+|.+.......    .....|.  ++..++++ +++.+|++.+++++.+ +|++|++
T Consensus        98 ~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~----~a~~~g~--~v~~~~~~-~~g~~~~~~~~~~i~~-~t~lv~~  169 (405)
T d1jf9a_          98 NLVANSWGNSNVRAGDNIIISQMEHHANIVPWQM----LCARVGA--ELRVIPLN-PDGTLQLETLPTLFDE-KTRLLAI  169 (405)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHH----HHHHHTC--EEEEECBC-TTSCBCGGGHHHHCCT-TEEEEEE
T ss_pred             HHHHhcccccccCCCCEEEEEeCcccchHHHHHH----HHHHcCc--EEEEECCC-CCCcCCHHHHHHhccC-CcEEEEE
Confidence            777765    368999999999998776533221    1122344  66666777 4689999999999988 9999999


Q ss_pred             cCCCCC--CCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchh
Q 010008          249 GASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGV  325 (520)
Q Consensus       249 ~~s~~p--~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~  325 (520)
                      +..+|.  ...|+++|.++|+++|+++++|++|+.|.+..++...   ++|++++|+|||+ ||+| |+++.++      
T Consensus       170 ~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~---~~D~~~~s~hK~~-Gp~G~g~l~v~~------  239 (405)
T d1jf9a_         170 THVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQAL---DCDFYVFSGHKLY-GPTGIGILYVKE------  239 (405)
T ss_dssp             ESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---TCSEEEEEGGGTT-SCSSCEEEEECH------
T ss_pred             ecCCCcccccCchHHhhhHHHHcCCeeecccceeccccccchhhc---CCceeeccccccc-cCCCceeeeech------
Confidence            855443  3899999999999999999999999999775443322   5999999999996 8998 9999987      


Q ss_pred             hHHHhhcccC---------------------CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC
Q 010008          326 ELESAINNAV---------------------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL  384 (520)
Q Consensus       326 ~l~~~i~~~~---------------------~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~  384 (520)
                      ++.+.+....                     .....|+++...++++..|++.....+.+...++.....+.+.+.+...
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~  319 (405)
T d1jf9a_         240 ALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESV  319 (405)
T ss_dssp             HHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             hhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhcC
Confidence            3333322110                     0012588999999999999887665556666666666667777777665


Q ss_pred             CCEEec-CCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC---CCCCCCEEEEccCCccccCCCHHHHHHH
Q 010008          385 GYKLVS-GGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK---SALVPGGIRIGSPAMTTRGFSEKEFVAI  460 (520)
Q Consensus       385 G~~v~~-~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~---~~~~~~giRig~~~~tt~g~~~~d~~~l  460 (520)
                      +..... +....+.+.+.+  .+.++..+...|++.||.++.+......   ....++.||||++.+||    ++|++++
T Consensus       320 ~~~~~~~~~~r~~ivsf~~--~~~~~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt----~eDid~l  393 (405)
T d1jf9a_         320 PDLTLYGPQNRLGVIAFNL--GKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNT----HEEVDRL  393 (405)
T ss_dssp             TTEEEESCTTCCSEEEEEE--TTCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCC----HHHHHHH
T ss_pred             CcccccCCcCcCcEEEEEc--CCCCHHHHHHHHHHCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCC----HHHHHHH
Confidence            544333 322233444444  3567888999999999998643210000   01135789999998876    8999999


Q ss_pred             HHHHHHHHHH
Q 010008          461 ADFIHEGVEI  470 (520)
Q Consensus       461 a~~i~~~l~~  470 (520)
                      ++.|+++++.
T Consensus       394 ~~~l~~i~r~  403 (405)
T d1jf9a_         394 VTGLQRIHRL  403 (405)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988764

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.7e-27  Score=245.23  Aligned_cols=340  Identities=15%  Similarity=0.179  Sum_probs=230.0

Q ss_pred             cCCCCChHHHHHHHhhhhhccCCCCCCCCCCCC-cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHH
Q 010008          100 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG-GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYT  177 (520)
Q Consensus       100 asen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~-g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~  177 (520)
                      ++..+.|+.|+|+|.+.+.+....|.|....|. |....+.++ .+|+.+++++|+++++    |..++|+ +++..++.
T Consensus         9 aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~-~~R~~iA~~lg~~~~~----I~~~~~~t~~l~~~~~   83 (391)
T d1p3wa_           9 SATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVD-IARNQIADLVGADPRE----IVFTSGATESDNLAIK   83 (391)
T ss_dssp             TTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHH-HHHHHHHHHHTCCGGG----EEEESSHHHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHH-HHHHHHHHHcCCCCCc----EEEECCHHHHHHHHHh
Confidence            345688999999999988766555666544332 333333444 6789999999999874    4445554 88777776


Q ss_pred             hh----CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC
Q 010008          178 AI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  253 (520)
Q Consensus       178 al----l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~  253 (520)
                      ++    +++||+|++.+++|++.+....     .+...|.  ++..++.+ +++.+|++++++++++ +||+|++++++|
T Consensus        84 ~~~~~~~~~gd~Vv~~~~~~~s~~~~~~-----~~~~~G~--~v~~v~~~-~~~~~d~~~~~~~i~~-~T~lv~is~~~n  154 (391)
T d1p3wa_          84 GAANFYQKKGKHIITSKTEHKAVLDTCR-----QLEREGF--EVTYLAPQ-RNGIIDLKELEAAMRD-DTILVSIMHVNN  154 (391)
T ss_dssp             HHHHHHGGGCCEEEEETTSCHHHHHHHH-----HHHHTTC--EEEEECCC-TTSCCCHHHHHHHCCT-TEEEEECCSBCT
T ss_pred             hhhhhhcCCCCEEEEeccccchHHHHHH-----HHHHcCC--EEEEeCCC-CCCeEcHHHHHHhCCC-CcEEEEEECCCC
Confidence            54    6899999999998876542211     1222344  66666666 4678999999999998 999999998777


Q ss_pred             CC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHh
Q 010008          254 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA  330 (520)
Q Consensus       254 p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~  330 (520)
                      ++  ..|+++|+++|+++|+++++|++|+.|....++...   ++|++++|+|||+ ||.| |+++.+++      ....
T Consensus       155 ~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~---~~D~~~~s~~k~~-g~~g~g~~~~~~~------~~~~  224 (391)
T d1p3wa_         155 EIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQL---KVDLMSFSGHKIY-GPKGIGALYVRRK------PRVR  224 (391)
T ss_dssp             TTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTBCCCTTTS---CCSEEEEESTTTT-SCSSCEEEEECBT------TBCC
T ss_pred             CCeeECCHHHHHHHhccCCcEEEEeeccccCCccccchhc---ccccccccccccc-CCCceEEEEEecc------hhcc
Confidence            65  889999999999999999999999999875554333   5899999999996 6666 99999874      3222


Q ss_pred             hcccCCC------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecC-CC--CCeeEEEE
Q 010008          331 INNAVFP------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG-GS--DNHLVLVD  401 (520)
Q Consensus       331 i~~~~~p------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~-gt--~~~~~~vd  401 (520)
                      .......      ...|+......++++.++.... ....+..+++.+.+..+.+.|.+.+...+.. ..  ..+.+.  
T Consensus       225 ~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~--  301 (391)
T d1p3wa_         225 IEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAK-EEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILN--  301 (391)
T ss_dssp             CCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEE--
T ss_pred             cCCcccCCccccCcccCcchhhhhhhhhhhhhHHH-HHhhHHHHHHHHHHHHHHHHHHhhcCeeecccccccCceEEE--
Confidence            2222111      1245667777777777766554 2344555666677777777777654444332 11  123222  


Q ss_pred             ecCCCCCHHHHHHHHhhcCeEEcCCC--CCCCCCC------------CCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          402 LRPMGIDGARVEKILDMASITLNKNS--VPGDKSA------------LVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       402 ~~~~g~~~~~~~~~L~~~gI~v~~~~--~Pg~~~~------------~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      +...+.+++.+...|.  +|.++.+.  .++...+            ...++||||++.+||    ++|++++++.|+++
T Consensus       302 ~~~~~~~~~~~~~~l~--~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt----~edid~l~~~l~~~  375 (391)
T d1p3wa_         302 VSFNYVEGESLIMALK--DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTT----EEEIDYTIELVRKS  375 (391)
T ss_dssp             EEETTSCHHHHHHHTT--TEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCC----HHHHHHHHHHHHHH
T ss_pred             EEeCCCChHHHHHHhC--CCEEEccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCC----HHHHHHHHHHHHHH
Confidence            3334567777777775  44443221  1111100            013579999987776    89999999999999


Q ss_pred             HHHHH
Q 010008          468 VEITL  472 (520)
Q Consensus       468 l~~~~  472 (520)
                      +...+
T Consensus       376 l~~lr  380 (391)
T d1p3wa_         376 IGRLR  380 (391)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98654

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.96  E-value=2.3e-27  Score=244.36  Aligned_cols=336  Identities=13%  Similarity=0.082  Sum_probs=229.2

Q ss_pred             ccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      +.|+|..+++  .+|+.|++++...+.+.+ .+|+..   .|   ..++.+...+++.+.+|+..+.  -+|.+|+|+ +
T Consensus        31 ~vi~l~~G~p~~~~p~~v~~a~~~~~~~~~-~~Y~~~---~G---~~~lR~aia~~~~~~~g~~~~~--~~i~it~G~~~  101 (388)
T d1j32a_          31 DVCSFSAGEPDFNTPKHIVEAAKAALEQGK-TRYGPA---AG---EPRLREAIAQKLQRDNGLCYGA--DNILVTNGGKQ  101 (388)
T ss_dssp             CCEECCCSSCSSCCCHHHHHHHHHHHHTTC-CSCCCT---TC---CHHHHHHHHHHHHHHHCCCCCG--GGEEEESHHHH
T ss_pred             CeEECCCCCCCCCCCHHHHHHHHHHHhcCC-CCCCCC---CC---CHHHHHHHHHHHHHhcccCCCC--ceEEEcCCHHH
Confidence            6788887764  368999999988876543 234321   12   2345555567888888876321  267779998 9


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhhcCCcEEEEc
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAG  249 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~~~pklIi~~  249 (520)
                      |+..++.++++|||+|++++|.|.++..        .+...|.  +.+.++.+.+ ++.+|++++++.+++ ++++++++
T Consensus       102 al~~~~~~~~~~gd~Vlv~~P~y~~~~~--------~~~~~~~--~~v~~~~~~~~~~~~d~~~l~~~~~~-~~~~~~~~  170 (388)
T d1j32a_         102 SIFNLMLAMIEPGDEVIIPAPFWVSYPE--------MVKLAEG--TPVILPTTVETQFKVSPEQIRQAITP-KTKLLVFN  170 (388)
T ss_dssp             HHHHHHHHHCCTTCEEEEESSCCTHHHH--------HHHHTTC--EEEEECCCGGGTTCCCHHHHHHHCCT-TEEEEEEE
T ss_pred             HHHHHHHHHhCCCCEEEEcCCCcHHHHH--------HHHHhcC--eEEEEecccccccCCCHHHHHHhCCC-CCeEEEEC
Confidence            9999999999999999999998765421        2334454  5556655443 468999999999987 89999999


Q ss_pred             CCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-------cccEEEeccCccc--CCCCceEE
Q 010008          250 ASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-------YCDVVTTTTHKSL--RGPRGGMI  315 (520)
Q Consensus       250 ~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-------~aDiv~~S~hK~l--~GprgG~I  315 (520)
                      .|+||+  .++   +++|.++|+++|++||+|+++ ..+.+.+....++.       ...+++.|++|++  +|+|.||+
T Consensus       171 ~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y-~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~  249 (388)
T d1j32a_         171 TPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIY-EKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFL  249 (388)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTT-TTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEE
T ss_pred             CCCCCCCcccchhhhhhhhcccccCCeEEEchhhh-hcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhHeEEE
Confidence            999997  444   677888899999999999985 44444432222221       1237889999986  79999999


Q ss_pred             EeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCC
Q 010008          316 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSD  394 (520)
Q Consensus       316 ~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~  394 (520)
                      ++++      ++.+.+.+.......+.+...+. +...++... ...+++..+.+.++++.+.+.|.+. |+.+..+ ..
T Consensus       250 ~~~~------~~~~~~~~~~~~~~~~~~~~~q~-a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p-~g  320 (388)
T d1j32a_         250 AGPV------PLVKAATKIQGHSTSNVCTFAQY-GAIAAYENS-QDCVQEMLAAFAERRRYMLDALNAMPGLECPKP-DG  320 (388)
T ss_dssp             ECCH------HHHHHHHHHHHTTTCSCCHHHHH-HHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCC-CB
T ss_pred             EECH------HHHHHHHHhhhhccccccHHHHH-HHhhcccch-HHHHHHHHHHHHHHHHHHHHHHHhCCCCEecCC-Cc
Confidence            9987      56655443222111222223333 333334332 2345777888889999999999884 7776554 23


Q ss_pred             CeeEEEEecCCCCCHHH-HHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          395 NHLVLVDLRPMGIDGAR-VEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       395 ~~~~~vd~~~~g~~~~~-~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +.++|+++...+.+..+ +.++|+++||.+    .||... ..++++|++..      .+++++++..+.|+++++.
T Consensus       321 g~~l~~~l~~~~~~~~~~~~~ll~~~gV~v----~pG~~F-~~~~~~Rls~~------~~~e~l~~al~rl~~~l~~  386 (388)
T d1j32a_         321 AFYMFPSIAKTGRSSLDFCSELLDQHQVAT----VPGAAF-GADDCIRLSYA------TDLDTIKRGMERLEKFLHG  386 (388)
T ss_dssp             TTEECCBCGGGTCCHHHHHHHHHHHHCEEC----EEGGGG-TCTTBEEEECC------SCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCCHHHHHHHHHHhCCEEE----Eecccc-CCCCeEEEEEe------CCHHHHHHHHHHHHHHHHH
Confidence            56678788655566655 456678899999    455431 13578999863      3478888888888887764

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.95  E-value=2.3e-26  Score=238.39  Aligned_cols=345  Identities=17%  Similarity=0.134  Sum_probs=242.2

Q ss_pred             ceEe-cCCCCChHHHHHHHhhhhhccCCCCCCCC-CCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh-HHHH
Q 010008           96 LELI-ASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPAN  172 (520)
Q Consensus        96 i~Li-asen~~~~~V~ea~~s~l~~~y~~G~p~~-ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG-s~A~  172 (520)
                      |.|. ++..++|+.|++++...+.+.|  +.|+. .+..|.+..+.+| .+++.+++++|++.++.   |..+++ ++++
T Consensus        24 iYld~a~~~~~p~~v~~~~~~~~~~~~--~n~~s~~~~~~~~~~~~~e-~aR~~ia~llga~~~~~---i~~~~~tt~~~   97 (408)
T d1t3ia_          24 VYLDNAATSQKPRAVLEKLMHYYENDN--ANVHRGAHQLSVRATDAYE-AVRNKVAKFINARSPRE---IVYTRNATEAI   97 (408)
T ss_dssp             EECBTTTCCCCCHHHHHHHHHHHHHTC--CCC--CCSHHHHHHHHHHH-HHHHHHHHHTTCSCGGG---EEEESSHHHHH
T ss_pred             EEeeCccccCCCHHHHHHHHHHHHhcC--CCCCchhhHHHHHHHHHHH-HHHHHHHHHhCCCCccc---EEeecchHHHH
Confidence            5664 4667899999999999888766  34432 2344555556666 57899999999985432   333444 4777


Q ss_pred             HHHHHh----hCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEE
Q 010008          173 FEVYTA----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA  248 (520)
Q Consensus       173 ~~~l~a----ll~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~  248 (520)
                      ..+..+    -+++||+|++.+.+|.+.......    .....|.  ++..++.+ .++..|.+.+++++++ +|++|++
T Consensus        98 n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~----~~~~~g~--~v~~~~~~-~~~~~~~~~l~~~~~~-~t~lv~i  169 (408)
T d1t3ia_          98 NLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQM----VAAKTGA--VLKFVQLD-EQESFDLEHFKTLLSE-KTKLVTV  169 (408)
T ss_dssp             HHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHH----HHHHHCC--EEEEECBC-TTSSBCHHHHHHHCCT-TEEEEEE
T ss_pred             HHHHhhccccccCCCCEEEeecccchhhhhhhhh----hhhccCc--eEeeeecc-ccccccHHHhhhccCC-CceEEEE
Confidence            766655    378999999999888766432210    1112244  44455554 4678999999999988 8999999


Q ss_pred             cCCC--CCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchh
Q 010008          249 GASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGV  325 (520)
Q Consensus       249 ~~s~--~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~  325 (520)
                      .+.+  .+...|+++|.++|+++|+++++|++|+.|.+..++...   ++|++++|+|||+ ||+| |+++.++      
T Consensus       170 ~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~---~~D~~~~s~hK~~-gp~G~g~l~v~~------  239 (408)
T d1t3ia_         170 VHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLI---DCDWLVASGHKMC-APTGIGFLYGKE------  239 (408)
T ss_dssp             ESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---TCSEEEEEGGGTT-SCTTCEEEEECH------
T ss_pred             ecccccccccCcHHHHhhhhhccCceeeeccceeccccccccccc---CCceEEecccccc-CCCCccccccch------
Confidence            7544  334899999999999999999999999999875443322   5899999999985 7887 8998887      


Q ss_pred             hHHHhhcccCC--------------------CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-
Q 010008          326 ELESAINNAVF--------------------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-  384 (520)
Q Consensus       326 ~l~~~i~~~~~--------------------p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-  384 (520)
                      +..........                    ....|++++..++++..|++.+...+.+...++.....+++.+.+.+. 
T Consensus       240 ~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~  319 (408)
T d1t3ia_         240 EILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIP  319 (408)
T ss_dssp             HHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             hhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhccCc
Confidence            44333221100                    012688999999999999987765566666677777788888888774 


Q ss_pred             CCEEecCCC--C--CeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCC---CCCCCCCCCCEEEEccCCccccCCCHHHH
Q 010008          385 GYKLVSGGS--D--NHLVLVDLRPMGIDGARVEKILDMASITLNKNSV---PGDKSALVPGGIRIGSPAMTTRGFSEKEF  457 (520)
Q Consensus       385 G~~v~~~gt--~--~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~---Pg~~~~~~~~giRig~~~~tt~g~~~~d~  457 (520)
                      ++.++.+..  .  .+++.+.+  .++++.++...|++.||.++.++.   |-...-..++.||||.+.+||    ++|+
T Consensus       320 ~~~~~~~~~~~~~~~~iv~f~~--~~~~~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt----~~di  393 (408)
T d1t3ia_         320 QLRLYGPNPKHGDRAALASFNV--AGLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNT----KEEI  393 (408)
T ss_dssp             TEEEESCCGGGSCBCSEEEEEE--TTBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCC----HHHH
T ss_pred             cccccCCCccccCcceEEEEEe--CCCCHHHHHHHHhhCCcEEecCcccccHHHHhhcCCccEEEECCCCCC----HHHH
Confidence            566664321  1  22333333  467889999999999999875321   000000125679999998876    8999


Q ss_pred             HHHHHHHHHHHHH
Q 010008          458 VAIADFIHEGVEI  470 (520)
Q Consensus       458 ~~la~~i~~~l~~  470 (520)
                      +++++.|+++++.
T Consensus       394 d~li~~L~~~~~~  406 (408)
T d1t3ia_         394 DLFLQSLQATIRF  406 (408)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998863

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.9e-26  Score=234.66  Aligned_cols=339  Identities=13%  Similarity=0.122  Sum_probs=223.7

Q ss_pred             ceEecCC-C-CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHH
Q 010008           96 LELIASE-N-FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PAN  172 (520)
Q Consensus        96 i~Liase-n-~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~  172 (520)
                      |.|..++ + ++|+.|+||+.+.+.+.. .||+.   ++|.    ++.+...+++.+.+|.+.+.  -+|.+++|+ +++
T Consensus         2 ~~~~~~~~df~~p~~i~eal~~~~~~~~-~~Y~~---~~g~----~lr~~ia~~~~~~~g~~~~~--~~i~it~G~~~~l   71 (361)
T d1d2fa_           2 LPFTISDMDFATAPCIIEALNQRLMHGV-FGYSR---WKND----EFLAAIAHWFSTQHYTAIDS--QTVVYGPSVIYMV   71 (361)
T ss_dssp             EECCSSSCSSCCCHHHHHHHHHHHTTCC-CCCCC---SCCH----HHHHHHHHHHHHHSCCCCCG--GGEEEESCHHHHH
T ss_pred             cCcCCCCCCCCCCHHHHHHHHHHHhCCC-CCCCC---CCCH----HHHHHHHHHHHHHhCCCCCc--ceEEEeCCHHHHH
Confidence            4555555 3 468999999999886542 25654   3342    34445557888898876321  256678887 899


Q ss_pred             HHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 010008          173 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA  252 (520)
Q Consensus       173 ~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~  252 (520)
                      ..++.++++|||+|++++|.|.++..        .....|.....+++....+++.+|.+++++.+...++|+|++++++
T Consensus        72 ~~~~~~l~~~gd~Vlv~~P~y~~~~~--------~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~  143 (361)
T d1d2fa_          72 SELIRQWSETGEGVVIHTPAYDAFYK--------AIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQ  143 (361)
T ss_dssp             HHHHHHSSCTTCEEEEEESCCHHHHH--------HHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSC
T ss_pred             HHHhhhccccccccccccccccchhH--------HHHhhcceEEeecccccccccccccccchhhcccCCceeEEecccc
Confidence            99999999999999999998865531        2334454333333333334467999999999877689999999999


Q ss_pred             CCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC---c-ccEEEeccCccc--CCCCceEEEeeCCC
Q 010008          253 YPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK---Y-CDVVTTTTHKSL--RGPRGGMIFFKKDP  321 (520)
Q Consensus       253 ~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~---~-aDiv~~S~hK~l--~GprgG~I~~~~~~  321 (520)
                      ||+  ..   ++++|.++|+++|+++|+|+++ .++++.+..+.++.   . -.+++.|++|++  +|+|.||++.... 
T Consensus       144 NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y-~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~-  221 (361)
T d1d2fa_         144 NPTGKVWTCDELEIMADLCERHGVRVISDEIH-MDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENS-  221 (361)
T ss_dssp             TTTCCCCCTTHHHHHHHHHHHTTCEEEEECTT-TTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSH-
T ss_pred             cccccccchhhhhhhhhhhhhhheeeeecccc-cccccccccccccccccccccccccccccccccccccceeeecchh-
Confidence            997  33   4889999999999999999995 56665554443332   1 236778888864  7899999988753 


Q ss_pred             cchhhHHHhh-cccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH--CCCEEecCCCCCeeE
Q 010008          322 VLGVELESAI-NNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE--LGYKLVSGGSDNHLV  398 (520)
Q Consensus       322 ~~~~~l~~~i-~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~--~G~~v~~~gt~~~~~  398 (520)
                          ...... ..........+|....+++...++... ....++..+.+.++++.+.+.+.+  .++.+..+ ..++++
T Consensus       222 ----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p-~gg~~~  295 (361)
T d1d2fa_         222 ----SSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG-APWLDALRIYLKDNLTYIADKMNAAFPELNWQIP-QSTYLA  295 (361)
T ss_dssp             ----HHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCC-SBCSEE
T ss_pred             ----HHHHHHhhhcccccccccchhhhHHHHHHHhhcc-chhhhcccccchhhHHHHHHHhhhhccccccccc-CceeEE
Confidence                222221 111111122344444444333333332 223356667777778888877766  35655543 235677


Q ss_pred             EEEecCCCCCHHHHHHH-HhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          399 LVDLRPMGIDGARVEKI-LDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       399 ~vd~~~~g~~~~~~~~~-L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      |+++.+.++++.++.+. |+++||.+.    ||.. +....+++||++.      .+++++++..+.|.++++.
T Consensus       296 ~~~l~~~~~~~~~~~~~Ll~~~gv~v~----pG~~F~~~~~~~vRis~~------~~~e~l~~al~rl~~~l~~  359 (361)
T d1d2fa_         296 WLDLRPLNIDDNALQKALIEQEKVAIM----PGYTYGEEGRGFVRLNAG------CPRSKLEKGVAGLINAIRA  359 (361)
T ss_dssp             EEECGGGCCCHHHHHHHHHHTTCEECE----EGGGGCGGGTTEEEEECC------SCHHHHHHHHHHHHHHHHH
T ss_pred             EEEccCCCCCHHHHHHHHHHhCCEEEE----eccccCCCCCCEEEEEEc------CCHHHHHHHHHHHHHHHHh
Confidence            88987777888776654 578899994    4433 2234578999852      3478888888888887764

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.95  E-value=1.4e-26  Score=237.28  Aligned_cols=336  Identities=15%  Similarity=0.122  Sum_probs=230.2

Q ss_pred             ceEe-cCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHH
Q 010008           96 LELI-ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE  174 (520)
Q Consensus        96 i~Li-asen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~  174 (520)
                      +.|. ++..++|..|++++...+.+.+..|.-   .+.......++.+.+++.+++++|++++++   +...+||+|+..
T Consensus         9 ~yld~~~~~~~p~~v~ea~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~r~~la~~~~~~~~~i---~~~~g~t~a~~~   82 (381)
T d1elua_           9 TYFNFGGQGILPTVALEAITAMYGYLQENGPF---SIAANQHIQQLIAQLRQALAETFNVDPNTI---TITDNVTTGCDI   82 (381)
T ss_dssp             EECCTTTCCCCCHHHHHHHHHHHHHHHHHCSS---SHHHHHHHHHHHHHHHHHHHHHTTSCGGGE---EEESSHHHHHHH
T ss_pred             EEeeCCcccCCCHHHHHHHHHHHHHhhcCCCc---cchhhHHHHHHHHHHHHHHHHHhCCCcccE---EEECChHHHhhh
Confidence            4443 466788999999999888654333211   122233444544567899999999998743   223445699999


Q ss_pred             HHHhh-CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCC-HHHHHHHhhhcCCcEEEEcCCC
Q 010008          175 VYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVD-YDMLEKTAILFRPKLIIAGASA  252 (520)
Q Consensus       175 ~l~al-l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD-~d~le~~i~~~~pklIi~~~s~  252 (520)
                      ++.++ +++||+|++.+.+|++......    ......|.  +++.++.+......| .+.+++++++ +|+++++..++
T Consensus        83 ~~~~l~~~~g~~i~~~~~~~~s~~~~~~----~~~~~~g~--~~~~v~~~~~~~~~~~~~~l~~~i~~-~t~~v~i~~~~  155 (381)
T d1elua_          83 VLWGLDWHQGDEILLTDCEHPGIIAIVQ----AIAARFGI--TYRFFPVAATLNQGDAAAVLANHLGP-KTRLVILSHLL  155 (381)
T ss_dssp             HHHHSCCCTTCEEEEETTCCHHHHHHHH----HHHHHHCC--EEEEECCGGGSSSSCHHHHHHTTCCT-TEEEEEEESBC
T ss_pred             cchhhhhcCCceEEEeccccceeeeccc----cccccccc--cccccccccccccchHHHHHHhhhcc-ccccccccccc
Confidence            99888 7899999999988865432111    01122344  455555442222333 5667777777 89999998777


Q ss_pred             CCC--CCCHHHHHHHHHHh----CCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchh
Q 010008          253 YPR--DFDYPRMRQIADAV----GALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGV  325 (520)
Q Consensus       253 ~p~--~~d~~~i~~ia~~~----g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~  325 (520)
                      |++  ..|+++|.++|+++    |+++++|++|+.|....+....   ++|++++|+|||+.||.| |+++.+++     
T Consensus       156 n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~---~~D~~~~s~~K~~~~p~G~g~l~~~~~-----  227 (381)
T d1elua_         156 WNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRL---EVDYYAFTGHKWFAGPAGVGGLYIHGD-----  227 (381)
T ss_dssp             TTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTS---CCSEEEEESSSTTCCCTTCEEEEECTT-----
T ss_pred             ccccccchhhHHHHHHhhccccccccccccccccccccccccccc---ccccccccccccccccchhhHHHhhHH-----
Confidence            654  88999999999985    6999999999888654332221   699999999999999988 99998874     


Q ss_pred             hHHHhhcccCC---------------------CCCCCCChHHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHHHHHHHH
Q 010008          326 ELESAINNAVF---------------------PGLQGGPHNHTIGGLAVCLKHAQSPEF-KVYQNKVVSNCRALASRLVE  383 (520)
Q Consensus       326 ~l~~~i~~~~~---------------------p~~~g~p~~~~iaala~al~~~~~~~~-~~~~~~i~~na~~l~~~L~~  383 (520)
                       ..+.+.....                     ....|+++...+.++..|++.....+. +...++..++++++.+.|++
T Consensus       228 -~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~  306 (381)
T d1elua_         228 -CLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQ  306 (381)
T ss_dssp             -TGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhc
Confidence             3333221110                     012467888888888888876654444 44567888889999999998


Q ss_pred             -CCCEEecCC-CCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHH
Q 010008          384 -LGYKLVSGG-SDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIA  461 (520)
Q Consensus       384 -~G~~v~~~g-t~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la  461 (520)
                       .|++++.+. ....++.+.+.. ..+.+.+.+.|++.||.++..        ..+++||||.+.+||    ++|++++.
T Consensus       307 ~~~~~~~~~~~~~~~~vsf~~~~-~~~~~~i~~~L~~~gi~v~~~--------~~~~~lRis~~~~nt----~edid~ll  373 (381)
T d1elua_         307 LPHVHCLATSAPQAGLVSFTVDS-PLGHRAIVQKLEEQRIYLRTI--------ADPDCIRACCHYITD----EEEINHLL  373 (381)
T ss_dssp             STTEEESCSSCCSSSEEEEEECS-SSCHHHHHHHHHHTTEECEEE--------TTTTEEEEECCTTCC----HHHHHHHH
T ss_pred             CCCeEecCCCCccccEEEEEcCC-CCCHHHHHHHHHhCCcEEEec--------CCCCEEEEecCCCCC----HHHHHHHH
Confidence             588887542 123344444432 235677889999999988532        135789999876665    89999999


Q ss_pred             HHHHH
Q 010008          462 DFIHE  466 (520)
Q Consensus       462 ~~i~~  466 (520)
                      +.|++
T Consensus       374 ~~l~e  378 (381)
T d1elua_         374 ARLAD  378 (381)
T ss_dssp             HHHTT
T ss_pred             HHHHh
Confidence            98865

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=1.8e-25  Score=228.55  Aligned_cols=337  Identities=19%  Similarity=0.186  Sum_probs=230.2

Q ss_pred             cCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCC-hHHHHHHHHHh
Q 010008          100 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS-GSPANFEVYTA  178 (520)
Q Consensus       100 asen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~s-Gs~A~~~~l~a  178 (520)
                      ++..++|+.|+|++..++.+.|  |+|+..|..+.+..+.++ .+|+++++++|+++++    |..++ +|+++..++.+
T Consensus         8 a~~~~~p~~v~ea~~~~~~~~~--~np~~~~~~~~~~~~~~~-~aR~~ia~l~~~~~~~----i~~~~~~T~~l~~~~~~   80 (376)
T d1eg5a_           8 NATTRVDDRVLEEMIVFYREKY--GNPNSAHGMGIEANLHME-KAREKVAKVLGVSPSE----IFFTSCATESINWILKT   80 (376)
T ss_dssp             TTCCCCCHHHHHHHHHHHHTCC--CCTTCSSHHHHHHHHHHH-HHHHHHHHHHTSCGGG----EEEESCHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHHHHcC--CCCccccHHHHHHHHHHH-HHHHHHHHHcCCCCCc----EEEECCHHHHHHhhhhc
Confidence            5677899999999999998876  567655555555555555 5789999999999874    33344 45887777653


Q ss_pred             ----hCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC
Q 010008          179 ----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP  254 (520)
Q Consensus       179 ----ll~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p  254 (520)
                          .+.+||.|+.....++.+....     +.+...|  ++++.+|++ +++.+|++++++++++ +|++|++++.+++
T Consensus        81 ~~~~~~~~g~~v~~~~~~~~~~~~~~-----~~~~~~g--~~v~~vp~~-~~~~id~~~l~~~i~~-~t~lv~is~v~~~  151 (376)
T d1eg5a_          81 VAETFEKRKRTIITTPIEHKAVLETM-----KYLSMKG--FKVKYVPVD-SRGVVKLEELEKLVDE-DTFLVSIMAANNE  151 (376)
T ss_dssp             HHHHTTTTCCEEEECTTSCHHHHHHH-----HHHHHTT--CEEEECCBC-TTSCBCHHHHHHHCCT-TEEEEEEESBCTT
T ss_pred             ccccccccCcccccccccchhhHHHH-----HHHHhcC--CEEEEEcCC-CCCeECHHHHHHhcCC-CceEEEEECCccc
Confidence                4678889988876655443211     1122334  477778887 4789999999999998 9999999977665


Q ss_pred             C--CCCHHHHHHHHHHh--CCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHH
Q 010008          255 R--DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES  329 (520)
Q Consensus       255 ~--~~d~~~i~~ia~~~--g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~  329 (520)
                      +  ..|++++.++++.+  |+++++|++|++|.+..+....   ++|++++|+|||+ ||+| |+++.+++.        
T Consensus       152 tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~---~~D~~~~s~~K~~-gp~G~~~l~~~~~~--------  219 (376)
T d1eg5a_         152 VGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKL---EVDYASFSAHKFH-GPKGVGITYIRKGV--------  219 (376)
T ss_dssp             TCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTT---CCSEEEEEGGGGT-SCTTCEEEEECTTS--------
T ss_pred             cceeeeehhhhhhhhhcccCceeEEEeeecccccccccccc---Cccceecccceee-cCCCceeEEeccCc--------
Confidence            5  78999999998666  9999999999999876554333   5899999999995 7887 888887731        


Q ss_pred             hhcccCCC------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEec
Q 010008          330 AINNAVFP------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLR  403 (520)
Q Consensus       330 ~i~~~~~p------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~  403 (520)
                      .+......      ...|.++.......+.+..... ..............+++.+.|...+..+.............+.
T Consensus       220 ~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  298 (376)
T d1eg5a_         220 PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAV-EELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVS  298 (376)
T ss_dssp             CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEE
T ss_pred             ccCCcccCCCCcccccCCcccchhhhhHHHHhhccc-cchhhhhhhhhhhhhhhccccccccccccccccccccceeeec
Confidence            12221111      1134445555555444444332 2344555666666777888887766665543222222223333


Q ss_pred             CCCCCHHHHHHHHhhcCeEEcCCC--CCCCCCC------------CCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          404 PMGIDGARVEKILDMASITLNKNS--VPGDKSA------------LVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       404 ~~g~~~~~~~~~L~~~gI~v~~~~--~Pg~~~~------------~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ..++++..+...|++.||.++.+.  .+++...            ..++.||+|.+.+||    ++|++++++.|+++++
T Consensus       299 ~~~~~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt----~edid~l~~~L~~iv~  374 (376)
T d1eg5a_         299 FPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNT----EEEVDYFLKKIEEILS  374 (376)
T ss_dssp             CTTCCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCC----HHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCC----HHHHHHHHHHHHHHHh
Confidence            456788999999999999986542  1221100            013569999887776    8999999999999875

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.94  E-value=2.5e-26  Score=236.93  Aligned_cols=351  Identities=14%  Similarity=0.117  Sum_probs=229.6

Q ss_pred             HHHHHHHHHHHh-hccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCC
Q 010008           81 VCEIITKEKERQ-FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDEN  157 (520)
Q Consensus        81 ~~~~~~~e~~~~-~~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~  157 (520)
                      -|+.+.++.... .+.|+|..++.  ++|+.|+||+...+.+.. .||+.     |.   .++++...+++++.+|++.+
T Consensus        18 k~~~~~~~~~~~g~~vi~l~~g~pdf~~p~~v~~al~~~~~~~~-~~Y~~-----g~---~~Lr~aia~~~~~~~g~~~~   88 (394)
T d1c7na_          18 KWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETV-LGYTG-----PT---EEYKKTVKKWMKDRHQWDIQ   88 (394)
T ss_dssp             HHHHHHHHCTTCCTTCCCCCSSSCSSCCCHHHHHHHHHHHHHCC-CSSBC-----CC---HHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHhHhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhCCC-cCCCC-----CC---HHHHHHHHHHHHHhcCCCCC
Confidence            355554443332 36788887764  468999999998886542 24532     32   36777777899999888643


Q ss_pred             CCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC--CCCCCHHHH
Q 010008          158 KWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--TGLVDYDML  234 (520)
Q Consensus       158 ~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~--~~~iD~d~l  234 (520)
                      .  -+|.+++|+ +|+..++.++++|||+|++++|.+.++..        .....|.  ..+.++.+.+  .+.+|.+.+
T Consensus        89 ~--~~I~vt~G~~~al~~~~~~~~~pgd~vi~~~p~~~~~~~--------~~~~~g~--~~v~~~~~~~~~~~~~d~~~~  156 (394)
T d1c7na_          89 T--DWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFM--------AIKNQER--KIIECELLEKDGYYTIDFQKL  156 (394)
T ss_dssp             G--GGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHH--------HHHTTTC--EEEECCCEEETTEEECCHHHH
T ss_pred             C--cceEeeccchhhhhhhhccccccccccccccCcccchhh--------HHhhhhh--cccccccccccccccchhhhh
Confidence            2  267778888 99999999999999999999987754432        2233343  5555544322  356899999


Q ss_pred             HHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-------cccEEEec
Q 010008          235 EKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-------YCDVVTTT  302 (520)
Q Consensus       235 e~~i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-------~aDiv~~S  302 (520)
                      +.++...++|+|++++|+||+  ..+   +++|.++|++++++||+|++ |..+++.+....+..       ..-+++.|
T Consensus       157 ~~~~~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~-Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s  235 (394)
T d1c7na_         157 EKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEI-HFDLIMPGYEHTVFQSIDEQLADKTITFTA  235 (394)
T ss_dssp             HHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECT-TTTCBCTTCCCCCGGGSCHHHHTTEEEEEC
T ss_pred             hhhhccccceEEEecccccccceeccHHHhhhhhccccccceeEecccc-ccccccCCccccchhhhhcccccceeeccc
Confidence            888765578999999999997  444   66788889999999999999 456665543332221       12377899


Q ss_pred             cCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 010008          303 THKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASR  380 (520)
Q Consensus       303 ~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~  380 (520)
                      ++|++  +|+|.|++++++.     .+.+.+.................++...+... .....+++.+...++++.+.+.
T Consensus       236 ~SK~~~~~G~R~g~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  309 (394)
T d1c7na_         236 PSKTFNIAGMGMSNIIIKNP-----DIRERFTKSRDATSGMPFTTLGYKACEICYKE-CGKWLDGCIKVIDKNQRIVKDF  309 (394)
T ss_dssp             SHHHHTCGGGCCEEEECCCH-----HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccCh-----hhhhhhhhhhhhccccccccccchhhhhhhcc-hhhhhcccccccchhhhhhhhh
Confidence            99974  7999888888774     45554433221111122222222222222222 1223366666667777777777


Q ss_pred             HHHC--CCEEecCCCCCeeEEEEecCCCCCHHHHHH-HHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHH
Q 010008          381 LVEL--GYKLVSGGSDNHLVLVDLRPMGIDGARVEK-ILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKE  456 (520)
Q Consensus       381 L~~~--G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~-~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d  456 (520)
                      |+..  |+.+..+ ..++++|++++..+++..++.+ +|+++||.+.    ||.. ++..++++||+..      .++++
T Consensus       310 l~~~~~~~~~~~p-~g~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~----pG~~Fg~~~~~~iRis~~------~~~e~  378 (394)
T d1c7na_         310 FEVNHPEIKAPLI-EGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFD----EGYIFGDGGIGFERINLA------APSSV  378 (394)
T ss_dssp             HHHHCTTSBCCCC-SBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCE----EGGGGCGGGTTEEEEECC------SCHHH
T ss_pred             hhccccceeecCC-CceeEEEEECCCCCCCHHHHHHHHHHhCCEEEE----cchhhCCCCCCEEEEEEe------CCHHH
Confidence            7653  5654433 2356788898766778877654 5678899984    4433 2334678999853      23677


Q ss_pred             HHHHHHHHHHHHHH
Q 010008          457 FVAIADFIHEGVEI  470 (520)
Q Consensus       457 ~~~la~~i~~~l~~  470 (520)
                      +++..+.|.++++.
T Consensus       379 i~eal~rl~~~l~~  392 (394)
T d1c7na_         379 IQESLERLNKALKD  392 (394)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            88888888877764

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.94  E-value=4.4e-26  Score=235.18  Aligned_cols=342  Identities=16%  Similarity=0.081  Sum_probs=225.9

Q ss_pred             ccceEecCCC-----CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCCh
Q 010008           94 KSLELIASEN-----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG  168 (520)
Q Consensus        94 ~~i~Liasen-----~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sG  168 (520)
                      +.|+|..++.     ++|+.+++++...+.+.. .+|+.   ..|   ..++.+...+++.+.+|.+.+.  -+|.+++|
T Consensus        31 ~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~~-~~Y~~---~~G---~~~LR~aia~~~~~~~g~~~~~--~~i~i~~G  101 (395)
T d1xi9a_          31 KVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGH-NYYGD---SEG---LPELRKAIVEREKRKNGVDITP--DDVRVTAA  101 (395)
T ss_dssp             CCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTC-CSCCC---TTC---CHHHHHHHHHHHHHHHCCCCCG--GGEEEESH
T ss_pred             CeEECCCCCCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC---CCC---CHHHHHHHHHhhhhcccccccc--cccccccc
Confidence            5688887663     468899999998876532 24543   223   3456666668888888886432  26777888


Q ss_pred             H-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC-CCCCCCHHHHHHHhhhcCCcEE
Q 010008          169 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       169 s-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-~~~~iD~d~le~~i~~~~pklI  246 (520)
                      + +++.+++.++++|||+|++++|.|..+..        .+...|.  +++.++.+. +++.+|++++++.+.+ +++++
T Consensus       102 ~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~--------~~~~~g~--~~v~v~~~~~~~~~~d~~~~~~~~~~-~~~~v  170 (395)
T d1xi9a_         102 VTEALQLIFGALLDPGDEILVPGPSYPPYTG--------LVKFYGG--KPVEYRTIEEEDWQPDIDDIRKKITD-RTKAI  170 (395)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHHTTC--EEEEEEEEGGGTSEECHHHHHHHCCT-TEEEE
T ss_pred             cchhhhhhhhhhcCCCCEEEEcCCccccchh--------hhhhcCC--EEEEEeccccccccchHHHHHHhhcc-cccEE
Confidence            7 89999999999999999999998754421        3345565  555555443 3578999999999987 89999


Q ss_pred             EEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC---ccc-EEEeccCccc--CCCCceEE
Q 010008          247 IAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK---YCD-VVTTTTHKSL--RGPRGGMI  315 (520)
Q Consensus       247 i~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~---~aD-iv~~S~hK~l--~GprgG~I  315 (520)
                      +++.|+||+  ..   .+++|.++|+++|++++.|+++ ..+.+.+....+..   ... |++.|++|++  +|+|.||+
T Consensus       171 ~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRvG~~  249 (395)
T d1xi9a_         171 AVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIY-DLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYM  249 (395)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTT-TTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEE
T ss_pred             EecCCCCCccchhhHHHHHHHHhhhhhcCeeEEecccc-ccccccccccchhhcCCCCCEEEEeCcchhcccchhhcEee
Confidence            999999997  44   4678889999999999999984 44554433322221   112 7788999975  79999998


Q ss_pred             EeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCC
Q 010008          316 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDN  395 (520)
Q Consensus       316 ~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~  395 (520)
                      ++.........+.+........ ..+.+...++++. .++.. ....+++..+.+.++++.+.+.|.+.+...+..+..+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~a~~-~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~gg  326 (395)
T d1xi9a_         250 YFVDPENKLSEVREAIDRLARI-RLCPNTPAQFAAI-AGLTG-PMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGA  326 (395)
T ss_dssp             EEECTTCTTHHHHHHHHHHHHH-TCCSCSHHHHHHH-HHHHS-CCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBS
T ss_pred             EecCHHHHHHHHHHHHHHhhcC-CCCcCHHHHHHHH-HHhcC-CHHHHHHHHHHHHHHHHHHHHHHHhCCCceecCCCee
Confidence            8765321111122211111000 1122233344332 24432 2234577788888999999999988764333333346


Q ss_pred             eeEEEEecCC-CCCH-HHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          396 HLVLVDLRPM-GIDG-ARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       396 ~~~~vd~~~~-g~~~-~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +++|++++.. ..+. +.+.++|+++||.+    .||.. +...++++||++.      .+++++++.++.|.++++
T Consensus       327 ~~~~~~l~~~~~~~~~~~~~~ll~~~gV~v----~PG~~Fg~~~~~~~Ris~~------~~~e~l~eal~rl~~~l~  393 (395)
T d1xi9a_         327 FYIFPKIEVGPWKNDKEFVLDVLHNAHVLF----VHGSGFGEYGAGHFRAVFL------PPIEILEEAMDRFEKFMK  393 (395)
T ss_dssp             SEECCEECSCSCSSHHHHHHHHHHHHCEEC----EEGGGGCGGGTTBEEEECC------SCHHHHHHHHHHHHHHHH
T ss_pred             EEEeEECCCCCCCCHHHHHHHHHHhCCEEE----EcChhhCCCCCCEEEEEec------CCHHHHHHHHHHHHHHHh
Confidence            7778888632 2344 44667788999998    45543 2334678999852      346888888888888775

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=1.1e-25  Score=229.51  Aligned_cols=350  Identities=16%  Similarity=0.118  Sum_probs=226.2

Q ss_pred             hhccccChHHHHHHHHHHHHhhccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHH
Q 010008           72 YSLGEADPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL  149 (520)
Q Consensus        72 ~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~  149 (520)
                      ++++...+.++..+.. ..+....|+|..+++  ++|+.+++|+...+...  .+|+.   ..|.   .+++    +.++
T Consensus         5 ~~~~~~~~~~~~~~~~-la~~~~~I~ls~g~p~~~~p~~i~~al~~~l~~~--~~Y~~---~~G~---~elr----~aiA   71 (368)
T d1v2da_           5 PRTEAAKESIFPRMSG-LAQRLGAVNLGQGFPSNPPPPFLLEAVRRALGRQ--DQYAP---PAGL---PALR----EALA   71 (368)
T ss_dssp             GGGGGC---CHHHHHH-HHHHHTCEECCCCSCSSCCCHHHHHHHHHHTTTS--CSCCC---TTCC---HHHH----HHHH
T ss_pred             hhhhhcCCCHHHHHHH-HhccCCCEEecCCCCCCCCCHHHHHHHHHHhhcc--cCCCC---CcCC---HHHH----HHHH
Confidence            4455566666665543 333346789876543  57899999999887542  35554   2232   2333    5677


Q ss_pred             HHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCC
Q 010008          150 AAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL  228 (520)
Q Consensus       150 ~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~  228 (520)
                      +.++++++    +|.+++|+ +|+..++.+++++||.|++.+|.|..+..        .....|.....++++.+.+++.
T Consensus        72 ~~~~~~~~----~Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~  139 (368)
T d1v2da_          72 EEFAVEPE----SVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLP--------DAFLAGAKARLVRLDLTPEGFR  139 (368)
T ss_dssp             HHHTSCGG----GEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCEEEEEECEEETTEEE
T ss_pred             hhcccCCc----ceeeccchHHHHHHHhhccccccccccccCCcchhhhh--------HHHhcCCccceecccccccccc
Confidence            88999986    55667777 99999999999999999999997764432        2234455444555444434578


Q ss_pred             CCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC---cccEEE
Q 010008          229 VDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK---YCDVVT  300 (520)
Q Consensus       229 iD~d~le~~i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~---~aDiv~  300 (520)
                      +|.+.+++.+++ +++++++++|+||+  ..+   +++|.++|+++|+++++|+++... ......+....   ...+++
T Consensus       140 ~d~~~l~~~~~~-~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~-~~~~~~~~~~~~~~~~~~~~  217 (368)
T d1v2da_         140 LDLSALEKALTP-RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDEL-YYGERPRRLREFAPERTFTV  217 (368)
T ss_dssp             CCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTC-BSSSCCCCHHHHCTTTEEEE
T ss_pred             CCHHHHHHhhcc-CceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhh-ccccccccccccccccccee
Confidence            999999999988 88999999999997  454   778889999999999999975432 22221111111   123566


Q ss_pred             eccCcc--cCCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHH
Q 010008          301 TTTHKS--LRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-SPEFKVYQNKVVSNCRAL  377 (520)
Q Consensus       301 ~S~hK~--l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~-~~~~~~~~~~i~~na~~l  377 (520)
                      .|++|.  ++|.|.|+++.++      ++.+.+.........+.....+.+ .+.++.... ....+...+.+.++++.+
T Consensus       218 ~~~sk~~~~~G~R~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~q~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~l  290 (368)
T d1v2da_         218 GSAGKRLEATGYRVGWIVGPK------EFMPRLAGMRQWTSFSAPTPLQAG-VAEALKLARREGFYEALREGYRRRRDLL  290 (368)
T ss_dssp             EEHHHHTTCGGGCCEEEECCT------TTHHHHHHHHHHHTSSCCHHHHHH-HHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             ecccccccccccccccccccc------cccchhhhhhhccccccccccccc-cccccccccchhhHHHHHHHHHHhhhhh
Confidence            677764  4788999999988      444443332211112222333322 223333222 223467777788999999


Q ss_pred             HHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHH
Q 010008          378 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEF  457 (520)
Q Consensus       378 ~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~  457 (520)
                      .+.|++.|+++..+. .++++|+++.  +.+   +.++|+++||.+..+...+. ....+++|||++.      .+++++
T Consensus       291 ~~~l~~~g~~~~~p~-g~~~~~~~l~--~~~---~~~ll~~~gI~v~pg~~F~~-~~~~~~~iRis~~------~~~e~i  357 (368)
T d1v2da_         291 AGGLRAMGLRVYVPE-GTYFLMAELP--GWD---AFRLVEEARVALIPASAFYL-EDPPKDLFRFAFC------KTEEEL  357 (368)
T ss_dssp             HHHHHHTTCCEECCS-BSSEEEEECT--TCC---HHHHHHHTCEECEEGGGGCS-SSCCTTEEEEECC------SCHHHH
T ss_pred             hhhHHhcCcEEecCC-ceeEEEEeCC--ccH---HHHHHHhCCEEEEechhhCC-CCCCCCEEEEEec------CCHHHH
Confidence            999999999987652 3567788874  334   44578899999954321111 1124678999853      247888


Q ss_pred             HHHHHHHHHHH
Q 010008          458 VAIADFIHEGV  468 (520)
Q Consensus       458 ~~la~~i~~~l  468 (520)
                      ++..+.|++++
T Consensus       358 ~~ai~rL~~~l  368 (368)
T d1v2da_         358 HLALERLGRVV  368 (368)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            88888887753

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.7e-25  Score=226.11  Aligned_cols=336  Identities=15%  Similarity=0.118  Sum_probs=233.9

Q ss_pred             ccceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHH
Q 010008           94 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  173 (520)
Q Consensus        94 ~~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~  173 (520)
                      +.+-++++...+++.|++||....        .+.|   +.++.+.++ .+++++++++|++.+.  ..+.+.|||.|+.
T Consensus        19 ~~~l~~pGP~~~~~~Vl~am~~~~--------i~HR---s~~f~~i~~-ea~~~l~~llg~~~~~--~ii~~gsgT~a~~   84 (388)
T d1h0ca_          19 NQLLLGPGPSNLPPRIMAAGGLQM--------IGSM---SKDMYQIMD-EIKEGIQYVFQTRNPL--TLVISGSGHCALE   84 (388)
T ss_dssp             CCEECSSSCCCCCHHHHHHHTCCC--------CCTT---SHHHHHHHH-HHHHHHHHHHTCCCSE--EEEESSCHHHHHH
T ss_pred             cCccccCCCCCCCHHHHHHhCcCC--------CCCC---CHHHHHHHH-HHHHHHHHHhCCCCCc--EEEEcCcHHHHHH
Confidence            346688888889999999996422        2222   345555555 6789999999997542  1244567789999


Q ss_pred             HHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC
Q 010008          174 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  253 (520)
Q Consensus       174 ~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~  253 (520)
                      +++.+++.+||++++....+.+..   +..   .....+.  ..+.+..+ +...+|.+++++.+...+++++.+.+.+|
T Consensus        85 ~~i~~l~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~n  155 (388)
T d1h0ca_          85 AALVNVLEPGDSFLVGANGIWGQR---AVD---IGERIGA--RVHPMTKD-PGGHYTLQEVEEGLAQHKPVLLFLTHGES  155 (388)
T ss_dssp             HHHHHHCCSSCCEEECBSSHHHHH---HHH---HHHHHC----CBCCBCC-TTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred             HHHHHhhccCCceeeecccceeee---ecc---ccccccc--cccccccC-CccccchHHHHHHhccCCcceEEEeeeee
Confidence            999999999999998876443221   100   1111222  33333333 35688999998877777999999886554


Q ss_pred             CC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHh
Q 010008          254 PR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA  330 (520)
Q Consensus       254 p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~  330 (520)
                      .+  ..|+++|.++|+++|+++++|++|++|....++...   ++|++++|.|||+.||.| |+++.++      +..+.
T Consensus       156 ~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~---~~D~~~~s~~K~~~gp~g~~~~~~~~------~~~~~  226 (388)
T d1h0ca_         156 STGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQ---GIDILYSGSQKALNAPPGTSLISFSD------KAKKK  226 (388)
T ss_dssp             TTTEECCCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTT---TCSEEEEESSSTTCCCTTCEEEEECH------HHHHH
T ss_pred             ccccccCHHHHHHHhhcccccceecccccccccccccccc---ccceecccccccccCCCceEEEeecH------HHHHh
Confidence            43  889999999999999999999999998775543333   689999999999999998 6666655      22221


Q ss_pred             hcc----------------------cCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEE
Q 010008          331 INN----------------------AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKL  388 (520)
Q Consensus       331 i~~----------------------~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v  388 (520)
                      +..                      .......++|+...+.++..+++...+.+.+...++.....+.+.+.+...|+.+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~  306 (388)
T d1h0ca_         227 MYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQL  306 (388)
T ss_dssp             HTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCB
T ss_pred             hhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhcCccc
Confidence            110                      1112235778888898888888877666677778888888888999998878766


Q ss_pred             ecCCC---CCeeEEEEecCCCCCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEcc-CCccccCCCHHHHHHHHHH
Q 010008          389 VSGGS---DNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGS-PAMTTRGFSEKEFVAIADF  463 (520)
Q Consensus       389 ~~~gt---~~~~~~vd~~~~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~-~~~tt~g~~~~d~~~la~~  463 (520)
                      ..+..   ...++.+.+ +.+++..++.+.| +++||.+..+.     .....+.||||+ ...+    +.+|+++++++
T Consensus       307 ~~~~~~~rs~~i~~~~~-p~~~~~~~~~~~L~~~~gI~v~~G~-----~~~~~~~iRis~~g~~~----t~edid~li~a  376 (388)
T d1h0ca_         307 FVKDPALRLPTVTTVAV-PAGYDWRDIVSYVIDHFDIEIMGGL-----GPSTGKVLRIGLLGCNA----TRENVDRVTEA  376 (388)
T ss_dssp             SSCSGGGBCTTEEEEEC-CTTCCHHHHHHHHHHHHCEECEECC-----GGGTTTEEEEECCGGGC----SHHHHHHHHHH
T ss_pred             ccCCHHHcCCeEEEEEC-CCCCCHHHHHHHHHhcCCEEEeCCc-----hhhcCCEEEEeCCCCCC----CHHHHHHHHHH
Confidence            54311   123344444 4577888876665 66799986542     123356899995 3344    47999999999


Q ss_pred             HHHHHHHH
Q 010008          464 IHEGVEIT  471 (520)
Q Consensus       464 i~~~l~~~  471 (520)
                      |+++++..
T Consensus       377 L~~~L~~l  384 (388)
T d1h0ca_         377 LRAALQHC  384 (388)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHHh
Confidence            99998854

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.93  E-value=6e-25  Score=222.73  Aligned_cols=325  Identities=14%  Similarity=0.131  Sum_probs=197.0

Q ss_pred             CCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHH-----HHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHH
Q 010008          101 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDE-----LETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV  175 (520)
Q Consensus       101 sen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~-----lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~  175 (520)
                      ..+.+++++++|+.+     |..||+..+|..+.. .+.     +-+..++++++++|++.    + +.+.+|++||+++
T Consensus        10 ~~~~l~~~a~~a~~~-----~~~g~~~~~~~~~~~-~~~~~~~~l~~~~~~~~A~~~g~e~----~-~~t~g~t~a~~~~   78 (364)
T d2e7ja1          10 TGGKLTEEARQALLE-----WGDGYSVCDFCTTGR-LDEIKTPPIHDFIHNQLPKFLGCDV----A-RVTNGAREAKFAV   78 (364)
T ss_dssp             HTCCCCHHHHHHHHH-----C---------------------CCHHHHHHTHHHHHTTSSE----E-EEESSHHHHHHHH
T ss_pred             cCCcCCHHHHHHHHH-----HhcCCchhccccccc-cccccChHHHHHHHHHHHHHhCcCE----E-EEECcHHHHHHHH
Confidence            456788999999875     445665544433211 111     22234478999999874    2 2345666999999


Q ss_pred             HHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC-CCCCCCHHHHHHHhhhc----CCcEEEEcC
Q 010008          176 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILF----RPKLIIAGA  250 (520)
Q Consensus       176 l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-~~~~iD~d~le~~i~~~----~pklIi~~~  250 (520)
                      +.++++|||+|++++++|.+.+.        .+...|.  +++.++++. .++.+|++++++++++.    ++++|++++
T Consensus        79 ~~al~~~gd~Vi~~~~~h~s~~~--------~~~~~g~--~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~  148 (364)
T d2e7ja1          79 MHSLAKKDAWVVMDENCHYSSYV--------AAERAGL--NIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITY  148 (364)
T ss_dssp             HHHHCCTTCEEEEETTCCHHHHH--------HHHHTTC--EEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEES
T ss_pred             HHHHhCCCcEEEeecccccccch--------HHHhccc--eEEEeeeccccccccCHHHHHhhhhhhcccCCceEEEeec
Confidence            99999999999999987754431        2334566  555555542 35789999999999763    235777777


Q ss_pred             CCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCC-ceEEEeeCCCcchhhH
Q 010008          251 SAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPR-GGMIFFKKDPVLGVEL  327 (520)
Q Consensus       251 s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gpr-gG~I~~~~~~~~~~~l  327 (520)
                      ++|++  ..|+++|.++|+++|+++++|++|..|.+..+....   ++|++++|+||++.+|. +|+++.+++      +
T Consensus       149 ~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~~~~~~~~---g~D~~~~S~~K~~~~~g~~g~l~~~~~------~  219 (364)
T d2e7ja1         149 PDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEI---GADFIVGSGHKSMAASGPIGVMGMKEE------W  219 (364)
T ss_dssp             SCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHH---TCSEEEEEHHHHSSCCSSCEEEEECTT------T
T ss_pred             CCCCCceeecchhheeccccccchhhccccchhhhhhhccccc---ccceeeeccccccCCCCCEEEEEECHH------H
Confidence            77664  789999999999999999999999877653211111   68999999999997765 488888873      3


Q ss_pred             HHhhcccCCCC-------CCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCC-eeEE
Q 010008          328 ESAINNAVFPG-------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDN-HLVL  399 (520)
Q Consensus       328 ~~~i~~~~~p~-------~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~-~~~~  399 (520)
                      .+.+.....+.       .++......+.++..+++... ...+.+ .+..++++.+.+.|.+.|+.++.....+ ....
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~-~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  297 (364)
T d2e7ja1         220 AEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVR-ERIKRW-DEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMF  297 (364)
T ss_dssp             TTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHH-HHGGGH-HHHHHHHHHHHHHHHHTTCEEESSSSCCSSEEE
T ss_pred             HHHHHhhccccCcccccccccccchhHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHcCCeecCCCCCCcceEE
Confidence            33322111111       112222222233333444332 111222 3345677888999999899887542222 2333


Q ss_pred             EEecC-------CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          400 VDLRP-------MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       400 vd~~~-------~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      ++...       .......+...|...|+..-   .||     ....+|+++.     +.+++|++++++.|+++++.
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~g-----~~~~~~~~~~-----~~t~edid~~~~~l~ei~~~  362 (364)
T d2e7ja1         298 FHAEVLYEISKKAKGGRFFLYRELKSRKIHGI---KPG-----LTRYFKLSTY-----GLSDEEVDYVLNAFKEIIEK  362 (364)
T ss_dssp             EECHHHHHHHHHSSSGGGHHHHHHHHTTEECS---CTT-----CCSEEEEECT-----TCCHHHHHHHHHHHHHHHHH
T ss_pred             EeccchHHHHHHhhccchHHHHHHHhcCCcee---cCC-----CcceEEEecc-----CCCHHHHHHHHHHHHHHHHH
Confidence            33211       00012234455666776542   122     2346787653     45689999999999998864

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.93  E-value=9.1e-25  Score=226.84  Aligned_cols=360  Identities=12%  Similarity=0.052  Sum_probs=238.0

Q ss_pred             hhhccccChHHHHHHHHHHHHhhccceEecCCC--CChHHHHHHHhhhhhcc--CCCCCCCCCCCCcchhHHHHHHHHHH
Q 010008           71 DYSLGEADPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNK--YSEGLPGKRYYGGNEYIDELETLCQK  146 (520)
Q Consensus        71 ~~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen--~~~~~V~ea~~s~l~~~--y~~G~p~~ryy~g~~~~d~lE~~a~~  146 (520)
                      .++++...+.+|..+.+. ..+.+.|+|..++.  ++|+.+++++...+.+.  ...+|+.   ..|.   .++.+...+
T Consensus         5 ~~~~~~~~~~~~~~~~~~-~~~~~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~---~~G~---~~lReaiA~   77 (418)
T d2r5ea1           5 PKRYQGSTKSVWVEYIQL-AAQYKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTR---GFGH---PRLVQALSK   77 (418)
T ss_dssp             CGGGTTCCCCHHHHHHHH-HHHHCCEECSSSCCSSCCCHHHHHHHHHHHTCSCGGGGSCCC---TTCC---HHHHHHHHH
T ss_pred             hhhhcCCCCCHHHHHHHH-hcCCCCEEccCCCCCCCCCHHHHHHHHHHHhCCCccCcCCCC---CCCC---HHHHHHHHH
Confidence            466788888888766543 33457899988764  36788999998877543  1224443   1232   355555567


Q ss_pred             HHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC
Q 010008          147 RALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES  225 (520)
Q Consensus       147 ~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~  225 (520)
                      ++.+.+|.+.+. ..+|.+|+|+ +|+..++.++++|||.|++++|.|.++..        .....|.  +++.++++++
T Consensus        78 ~~~~~~g~~~~p-~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~--------~~~~~g~--~~~~v~~~~~  146 (418)
T d2r5ea1          78 LYSQLVDRTINP-MTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEP--------MVKAAGG--IPRFIPLKPN  146 (418)
T ss_dssp             HHHHHHTSCCCT-TTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECEES
T ss_pred             HHHHHhCCCCCc-cceEEEcCCCchhhhhhhhhccccccceeccccccchhhH--------HHHHcCC--eEEEEEeccc
Confidence            889999886321 0257779998 89999999999999999999998765431        2334455  4444444332


Q ss_pred             C---------CCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCC
Q 010008          226 T---------GLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD  291 (520)
Q Consensus       226 ~---------~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~  291 (520)
                      .         +.+|.+++.+.... ++++++++.++||+  .++   +++|.++|+++|+++|.|+++ ..+...+....
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y-~~~~~~~~~~~  224 (418)
T d2r5ea1         147 KTGGTISSADWVLDNNELEALFNE-KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVY-EHMVFEPFEHI  224 (418)
T ss_dssp             CCSSCEEGGGEECCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTT-TTCBCTTCCCC
T ss_pred             ccccchhhhhhhhhHHHHhhhhhc-cccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccch-hhhccCCCccc
Confidence            1         35788998888776 89999999999997  444   667888999999999999985 44444332222


Q ss_pred             CC-C--c---ccEEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHh-----
Q 010008          292 PF-K--Y---CDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA-----  358 (520)
Q Consensus       292 p~-~--~---aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~-----  358 (520)
                      ++ .  .   .-+++.|++|++  +|+|.||+++++      ++.+.+.+.......+.+...+.++.. .+...     
T Consensus       225 s~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~------~~i~~~~~~~~~~~~~~~~~~q~a~~~-~l~~~~~~~~  297 (418)
T d2r5ea1         225 RICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPE------ALLKNLQMVHQNCVYTCATPIQEAIAV-GFETELKRLK  297 (418)
T ss_dssp             CGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEESCH------HHHHHHHHHHTTTTCSCCHHHHHHHHH-HHHHHHTTTT
T ss_pred             cccccccccceeeeeecCCccccCCCcccccccccc------hhhhhhhhcccccccccccchhhhccc-cccccccccc
Confidence            21 1  1   227788999975  899999999988      666655443322223444444433322 22211     


Q ss_pred             -cCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCC-----------CCCHHH-HHHHHhhcCeEEcC
Q 010008          359 -QSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM-----------GIDGAR-VEKILDMASITLNK  425 (520)
Q Consensus       359 -~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~-----------g~~~~~-~~~~L~~~gI~v~~  425 (520)
                       .+..+++..+.+..+++.+.+.|.+.|+.+..+ ..+.++|+++...           ..+..+ +..+|+++||.+  
T Consensus       298 ~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~P-~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v--  374 (418)
T d2r5ea1         298 SPECYFNSISGELMAKRDYMASFLAEVGMNPTVP-QGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQG--  374 (418)
T ss_dssp             STTSHHHHHHHHHHHHHHHHHHHHHHTTCEEEEC-SBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEEC--
T ss_pred             cchhhHHHHHHHHHHhhhhHHhhHhhcCCcccCC-CceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEE--
Confidence             122346777888889999999999999988765 3457788887531           122333 455678899999  


Q ss_pred             CCCCCCC-C-----CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          426 NSVPGDK-S-----ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       426 ~~~Pg~~-~-----~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                        .||.. .     ..++++|||++.      .+++++++..+.|++.+
T Consensus       375 --~PG~~F~~~~~~~~g~~~iRis~~------~~~e~l~~a~~rl~~~l  415 (418)
T d2r5ea1         375 --IPPSAFYSEPNKHLGEDFVRYCFF------KKDENLQKAAEILRKWK  415 (418)
T ss_dssp             --BCGGGGSCGGGHHHHTTEEEEECC------SCHHHHHHHHHHHHHHH
T ss_pred             --eCchhhCCCCCccCCCCEEEEEec------CCHHHHHHHHHHHHHHH
Confidence              45432 1     112478999863      24688888888877654

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=1.5e-24  Score=221.72  Aligned_cols=331  Identities=17%  Similarity=0.140  Sum_probs=221.2

Q ss_pred             hccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-
Q 010008           93 FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-  169 (520)
Q Consensus        93 ~~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-  169 (520)
                      ++.|+|..+++  ++|+.+++++...+.+.. .+|+..   .|   ..++.+...+++.+.+|.+.+..  +|.+++|+ 
T Consensus        28 ~~vI~l~~G~p~~~~p~~i~~~~~~~~~~~~-~~Y~~~---~G---~~~lR~aia~~~~~~~~~~~~~~--~i~~t~G~~   98 (375)
T d1o4sa_          28 EDVINLTAGEPDFPTPEPVVEEAVRFLQKGE-VKYTDP---RG---IYELREGIAKRIGERYKKDISPD--QVVVTNGAK   98 (375)
T ss_dssp             CCCEECCCSSCSSCCCHHHHHHHHHHHTTCC-CCCCCT---TC---CHHHHHHHHHHHHHHHTCCCCGG--GEEEESHHH
T ss_pred             CCeEECCCcCCCCCCCHHHHHHHHHHHhcCC-cCCCCC---cC---CHHHHHHHHhhhhhccccccccc--cccccCcHH
Confidence            35789988775  368999999988876543 245431   12   23556566678888888764322  56678887 


Q ss_pred             HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC-CCCCCCHHHHHHHhhhcCCcEEEE
Q 010008          170 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIA  248 (520)
Q Consensus       170 ~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-~~~~iD~d~le~~i~~~~pklIi~  248 (520)
                      +|+..++.++++|||+|++++|.+..+..        .....+.  ..+.++++. ..+.+|.+.++..... +++++++
T Consensus        99 ~al~~~~~~l~~~gd~vlv~~P~y~~~~~--------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l  167 (375)
T d1o4sa_          99 QALFNAFMALLDPGDEVIVFSPVWVSYIP--------QIILAGG--TVNVVETFMSKNFQPSLEEVEGLLVG-KTKAVLI  167 (375)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECCGGGTTCCCHHHHHHTCCT-TEEEEEE
T ss_pred             HHHHHHHHHHhCCCCEEEEccCccccchh--------hhhcccc--ccccccccccccccchhHHHHHhhcc-CccEEEE
Confidence            99999999999999999999998765432        2223444  333333332 3478899999888877 8899999


Q ss_pred             cCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-----cccEEEeccCccc--CCCCceEEE
Q 010008          249 GASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCDVVTTTTHKSL--RGPRGGMIF  316 (520)
Q Consensus       249 ~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-----~aDiv~~S~hK~l--~GprgG~I~  316 (520)
                      +.|+||+  ..   .+++|.++|++++++|++|+++. .+........++.     .--+++.|++|++  +|+|.||++
T Consensus       168 ~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~  246 (375)
T d1o4sa_         168 NSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYD-SLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLI  246 (375)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEE
T ss_pred             eCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhc-cccccccccccccccCCCCCEEEEeechhhccCCcccccccc
Confidence            9999997  33   47788889999999999999743 3333222111111     1237889999976  699999999


Q ss_pred             eeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCe
Q 010008          317 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNH  396 (520)
Q Consensus       317 ~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~  396 (520)
                      +++      ++.+.+...........+.....    .+.... ........+.+.++++.+.+.|++.|+++..+ ..+.
T Consensus       247 ~~~------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~r~~~~~~~l~~~g~~~~~p-~gg~  314 (375)
T d1o4sa_         247 SSE------KVATAVSKIQSHTTSCINTVAQY----AALKAL-EVDNSYMVQTFKERKNFVVERLKKMGVKFVEP-EGAF  314 (375)
T ss_dssp             CCH------HHHHHHHHHHHHHTCSCCHHHHH----HHHHHT-TCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCC-SBSS
T ss_pred             ccc------cchhhhhhhhccccccccccchh----hhhhhc-ccchhhhHHHHHHHHHHHHHHHHhcCceEecC-CccE
Confidence            998      45544432221111111111111    122222 23446667778888999999999999987654 3456


Q ss_pred             eEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          397 LVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       397 ~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ++|+++..  -+.+.+.++|+++||.+.    ||+.. ..+++|||++.      .+++++++..+.|+++++
T Consensus       315 f~~~~~~~--~~~~~~~~ll~~~gV~v~----pG~~F-~~~g~iRis~~------~~~e~l~~al~rl~~~l~  374 (375)
T d1o4sa_         315 YLFFKVRG--DDVKFCERLLEEKKVALV----PGSAF-LKPGFVRLSFA------TSIERLTEALDRIEDFLN  374 (375)
T ss_dssp             EEEEECSS--CHHHHHHHHHHHHCEECE----EGGGG-TCTTEEEEECC------SCHHHHHHHHHHHHHHHT
T ss_pred             EEEEECCC--CHHHHHHHHHHhCCEEEE----Ecccc-CCCCeEEEEEc------CCHHHHHHHHHHHHHHhc
Confidence            77888753  234557777889999994    55431 13678999863      247888888888887764

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.93  E-value=1.7e-24  Score=224.21  Aligned_cols=341  Identities=16%  Similarity=0.151  Sum_probs=222.6

Q ss_pred             ccceEecCCC------CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--------CCCCC
Q 010008           94 KSLELIASEN------FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--------DENKW  159 (520)
Q Consensus        94 ~~i~Liasen------~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~--------~~~~~  159 (520)
                      +.|+|..+++      ++++.+.+++...+......||+.   ..|.   .++.+.+.+++.+.++.        +++  
T Consensus        31 ~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~---~~LReaia~~~~~~~~~~~~~~~~~~~~--  102 (412)
T d1bw0a_          31 PIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFP---TVGS---PEAREAVATWWRNSFVHKEELKSTIVKD--  102 (412)
T ss_dssp             CCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCC---TTCC---HHHHHHHHHHHHHHHCCSTTTGGGCCGG--
T ss_pred             CcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCCCCC---CcCC---HHHHHHHHHHHHHhcCcccccCCCCCCC--
Confidence            4588887764      245778888877766554556654   2233   35555666788887754        332  


Q ss_pred             ceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHH
Q 010008          160 GVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKT  237 (520)
Q Consensus       160 ~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~  237 (520)
                        +|.+++|+ +|+..++.++++|||+|++++|.|.++..        .+...|.  +++.++++++ ++.+|++++++.
T Consensus       103 --~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~--------~~~~~G~--~~~~v~~~~~~~~~~~~~~l~~~  170 (412)
T d1bw0a_         103 --NVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYET--------VCKAYGI--GMHFYNCRPENDWEADLDEIRRL  170 (412)
T ss_dssp             --GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHTTC--EEEEEEEEGGGTTEECHHHHHHH
T ss_pred             --eEEEecccccchhhhhhhhhccccceeeeeccchhhhh--------hhhccCc--cccccccccccccchhhHHHHhh
Confidence              67778998 89999999999999999999998865531        3345565  5666666543 468999999998


Q ss_pred             hhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-------cc--cEEEecc
Q 010008          238 AILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-------YC--DVVTTTT  303 (520)
Q Consensus       238 i~~~~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-------~a--Div~~S~  303 (520)
                      ..+ ++++++++.|+||+  ..   ++++|.++|++++++||+|++ |.++.+.+..+.+..       ..  -+++.|+
T Consensus       171 ~~~-~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~-Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  248 (412)
T d1bw0a_         171 KDD-KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEI-YAGMVFKGKDPNATFTSVADFETTVPRVILGGT  248 (412)
T ss_dssp             CCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECT-TTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEES
T ss_pred             hhc-cccccccccccccccccchhhhccccccccccCCeeeechhh-HHHhccCCCCCcccccccccccccccccccccc
Confidence            887 88999999999987  33   477888889999999999999 567776654332211       11  2667899


Q ss_pred             Cccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 010008          304 HKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRL  381 (520)
Q Consensus       304 hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L  381 (520)
                      +|++  +|+|.||++++++......+........ . ...++.....+.++..+.........+..+++.++++.+.+.|
T Consensus       249 SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l  326 (412)
T d1bw0a_         249 AKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVG-M-LVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHI  326 (412)
T ss_dssp             TTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHH-H-HHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCccCCCCcccccccchhhcchhhhhhhcccc-c-cccCCchhhhhhcccccccccccccccccchhHHHHHHHHHHH
Confidence            9975  7999999999874211111111111110 0 0112222232222222222111234677788888899999999


Q ss_pred             HH-CCCEEecCCCCCeeEEEEecCC----CCCHHH-HHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHH
Q 010008          382 VE-LGYKLVSGGSDNHLVLVDLRPM----GIDGAR-VEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEK  455 (520)
Q Consensus       382 ~~-~G~~v~~~gt~~~~~~vd~~~~----g~~~~~-~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~  455 (520)
                      .+ .|+.+..+ ..+.++|+++...    ..+..+ +.++|+++||.+    +||... ..++++||++.      .+++
T Consensus       327 ~~~~g~~~~~p-~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v----~PG~~F-g~~g~iRis~~------~~~e  394 (412)
T d1bw0a_         327 GECIGLAPTMP-RGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQV----LPGTIF-HAPGFTRLTTT------RPVE  394 (412)
T ss_dssp             TTSTTEEECCC-CBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEEC----EEGGGG-TCTTEEEEECC------SCHH
T ss_pred             HHhcCceecCC-CCceEEEEeCChhhcCCCCCHHHHHHHHHHhCCEEE----Eecccc-CCCCeEEEEEc------CCHH
Confidence            77 58877654 2345667666421    124444 566778899999    565431 13679999863      2478


Q ss_pred             HHHHHHHHHHHHHHH
Q 010008          456 EFVAIADFIHEGVEI  470 (520)
Q Consensus       456 d~~~la~~i~~~l~~  470 (520)
                      ++++..+.|++.++.
T Consensus       395 ~l~eal~Rl~~~l~~  409 (412)
T d1bw0a_         395 VYREAVERIKAFCQR  409 (412)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            888888888777654

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.93  E-value=2.3e-24  Score=218.46  Aligned_cols=333  Identities=16%  Similarity=0.067  Sum_probs=216.9

Q ss_pred             ceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHH
Q 010008           96 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV  175 (520)
Q Consensus        96 i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~  175 (520)
                      +-+++++.++|+.|++||.....+++           +.++.+.+| .+++++++++|+++++. +-+..+|||.++.++
T Consensus         2 ~l~~pGP~~~~~~V~~A~~~~~~~~~-----------~~~~~~~~~-~~r~~l~~l~~~~~~~~-~i~~t~s~T~~~~~~   68 (361)
T d1m32a_           2 LLLTPGPLTTSRTVKEAMLFDSCTWD-----------DDYNIGVVE-QIRQQLTALATASEGYT-SVLLQGSGSYAVEAV   68 (361)
T ss_dssp             EECSSSSCCCCHHHHHTTCCCCCTTS-----------HHHHTTTHH-HHHHHHHHHHCSSSSEE-EEEEESCHHHHHHHH
T ss_pred             ccccCCCCCCCHHHHHHhhhhccCCC-----------cHHHHHHHH-HHHHHHHHHhCCCCCCE-EEEECCCHHHHHHHH
Confidence            34677888899999999865432221           122233333 57899999999987643 234456788999999


Q ss_pred             HHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC
Q 010008          176 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR  255 (520)
Q Consensus       176 l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~  255 (520)
                      +.++..++|.+++....+.+.....      .....+.....+..+.+ .....+.+.....+.+ +++++.+...++.+
T Consensus        69 ~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~t  140 (361)
T d1m32a_          69 LGSALGPQDKVLIVSNGAYGARMVE------MAGLMGIAHHAYDCGEV-ARPDVQAIDAILNADP-TISHIAMVHSETTT  140 (361)
T ss_dssp             HHHSCCTTCCEEEEESSHHHHHHHH------HHHHHTCCEEEEECCTT-SCCCHHHHHHHHHHCT-TCCEEEEESEETTT
T ss_pred             HHHhhhhccccceeeehhhhhhHHH------Hhhhhhccccccccccc-CCccchhhHHHHHhcc-CccceEEEeeeccc
Confidence            9999999998888764332211000      01111221222221111 1122233333444444 78988887554443


Q ss_pred             --CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhc
Q 010008          256 --DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAIN  332 (520)
Q Consensus       256 --~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~  332 (520)
                        ..|+++|.++|+++|+++++|++|++|.+..++...   ++|++++|.|||+.||.| |+++.+++      ..+++.
T Consensus       141 G~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~~~d~~~~---~~D~~~~s~~K~l~gp~G~g~l~~~~~------~~~~~~  211 (361)
T d1m32a_         141 GMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAAL---HIDYLISSANKCIQGVPGFAFVIAREQ------KLAACK  211 (361)
T ss_dssp             TEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTT---TCSEEEEESSSTTCCCSSEEEEEEEHH------HHTTCT
T ss_pred             ccchhhhhhhhhhcccceeeEeecccccCccccccccc---ccceEEeeecccccCCCCceEEEechh------hhhhhc
Confidence              889999999999999999999999999875554333   599999999999999999 99988873      222222


Q ss_pred             ccC-----------------CCCCCCCChHHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHHHHHHHHCCCEEecCC-C
Q 010008          333 NAV-----------------FPGLQGGPHNHTIGGLAVCLKHAQSPEF-KVYQNKVVSNCRALASRLVELGYKLVSGG-S  393 (520)
Q Consensus       333 ~~~-----------------~p~~~g~p~~~~iaala~al~~~~~~~~-~~~~~~i~~na~~l~~~L~~~G~~v~~~g-t  393 (520)
                      ...                 .....+++....+.++..++......+. ....++....++.+.+.+...|+.+..+. .
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~  291 (361)
T d1m32a_         212 GHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDEL  291 (361)
T ss_dssp             TCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGG
T ss_pred             cccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcCCcccCChhh
Confidence            111                 1122456777777777777766554444 45556677778888888888887765431 1


Q ss_pred             -CCeeEEEEec-CCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          394 -DNHLVLVDLR-PMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       394 -~~~~~~vd~~-~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                       .+.++.+.+. ..+.+..++.+.|.+.||.+.    +|+.  ..++.+|||+..++    +++|++++.+.|++++
T Consensus       292 rs~~v~~~~~p~~~~~~~~~~~~~l~~~gi~i~----~G~~--~~~~~~Ris~~g~~----~~~di~~lv~al~~~L  358 (361)
T d1m32a_         292 HSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIY----PGKV--SQSDCFRIGNIGEV----YAADITALLTAIRTAM  358 (361)
T ss_dssp             BCSSEEEEECCCCTTCCHHHHHHHHHHTTEECE----ECCC--SSSCEEEEECCSSC----CHHHHHHHHHHHHHHC
T ss_pred             cCCcEEEEECCCCCCCCHHHHHHHHHHCCcEEE----CCCc--CCCCEEEEeCCCCC----CHHHHHHHHHHHHHHc
Confidence             1233334332 234667889999999999984    3432  24568999964344    3799999999998875

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.4e-24  Score=223.69  Aligned_cols=362  Identities=12%  Similarity=0.054  Sum_probs=238.3

Q ss_pred             hhccccChHHHHHHHHHHHHhhccceEecCCC--CChHHHHHHHhhhhhccC-CCCCCCCCCCCcchhHHHHHHHHHHHH
Q 010008           72 YSLGEADPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNKY-SEGLPGKRYYGGNEYIDELETLCQKRA  148 (520)
Q Consensus        72 ~~l~~~d~~~~~~~~~e~~~~~~~i~Liasen--~~~~~V~ea~~s~l~~~y-~~G~p~~ryy~g~~~~d~lE~~a~~~~  148 (520)
                      ++|..+|+..|..+.+ .....+.|+|..++.  ++|+.|++++...+.+.. ..+|+..   .|   ..++.+...+++
T Consensus         5 ~r~~~~~~~~~~~~~~-~~~~~dvI~l~~G~p~~~~p~~v~~a~~~al~~~~~~~~Y~~~---~G---~~~LReaia~~~   77 (418)
T d1w7la_           5 RRLDGIDYNPWVEFVK-LASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKT---FG---YPPLTKILASFF   77 (418)
T ss_dssp             GGGTTCCCCTHHHHHH-HHHTSCCEECCCCSCSSCCCHHHHHHHHHHTSSCGGGGSCCCT---TC---CHHHHHHHHHHH
T ss_pred             ccccCCCCCHHHHHHH-HhCCCCCEECCCCCCCCCCCHHHHHHHHHHHhCCCcccCCCCC---cC---CHHHHHHHHHHH
Confidence            5667777777755533 233457899988774  468899999988776432 2244431   12   235555566788


Q ss_pred             HHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC---
Q 010008          149 LAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE---  224 (520)
Q Consensus       149 ~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~---  224 (520)
                      .+.+|.+.+.. -+|.+|+|+ +|+..++.++++|||.|++++|.+..+..        .+...|.  +.+.++.++   
T Consensus        78 ~~~~g~~~~~~-~~I~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~--------~~~~~g~--~~v~~~~~~~~~  146 (418)
T d1w7la_          78 GELLGQEIDPL-RNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEP--------MTMMAGG--RPVFVSLKPGPI  146 (418)
T ss_dssp             HHHHTCCCCHH-HHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECEECC-
T ss_pred             HHHhCCCCCcc-cceeeccCcHHHHHHHHHhhccCCceeeccccccchhHH--------HHHHcCC--Eeeccccccccc
Confidence            88889874311 257789998 99999999999999999999987765432        2233444  333332221   


Q ss_pred             --------CCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCC
Q 010008          225 --------STGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD  291 (520)
Q Consensus       225 --------~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~  291 (520)
                              +++.+|.+++.....+ ++++|+++.++||+  ..   .+++|.++|+++++++|+|++ |.++.+.+....
T Consensus       147 ~~~~~~~~~~~~~d~~~~~~~~~~-~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~-Y~~l~~~~~~~~  224 (418)
T d1w7la_         147 QNGELGSSSNWQLDPMELAGKFTS-RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEV-YQWMVYDGHQHI  224 (418)
T ss_dssp             --CCSEEGGGEECCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECT-TTTCBCTTCCCC
T ss_pred             cccccccccCcccchhhhhccccc-cccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhh-hHHhhcCCCCCC
Confidence                    2346888888888877 78899999999997  33   477888999999999999998 566665543332


Q ss_pred             CCC----cc--cEEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHh---c-
Q 010008          292 PFK----YC--DVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA---Q-  359 (520)
Q Consensus       292 p~~----~a--Div~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~---~-  359 (520)
                      ++.    ..  .+++.|++|.+  +|.|.||+++++      ++...+.+.......+.++..+.++. .++...   . 
T Consensus       225 ~~~~~~~~~~~~i~~~S~SK~~~~pG~RvG~~v~~~------~~~~~l~~~~~~~~~~~~~~~q~~~~-~~l~~~~~~~~  297 (418)
T d1w7la_         225 SIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPD------HIMKHLRTVHQNSVFHCPTQSQAAVA-ESFEREQLLFR  297 (418)
T ss_dssp             CGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEECCH------HHHHHHHHHHHTTTSCCCHHHHHHHH-HHHHHHHHTTT
T ss_pred             CHHHccccccccceecccCccccCCCCcccccccch------hhhhhhccccccccccccchhhHHHH-HHhhhcccccc
Confidence            221    12  37889999974  789999999988      66665544333223344555444433 233321   1 


Q ss_pred             --CchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecC---------CC---C-CHHHHHHHHhhcCeEEc
Q 010008          360 --SPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRP---------MG---I-DGARVEKILDMASITLN  424 (520)
Q Consensus       360 --~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~---------~g---~-~~~~~~~~L~~~gI~v~  424 (520)
                        ...+..+.+.+.++++.+.+.|.+.|+++..+ ..+.++|++++.         ..   . +.+.+.++|+++||.+.
T Consensus       298 ~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~P-~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~  376 (418)
T d1w7la_         298 QPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPLIP-QGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAI  376 (418)
T ss_dssp             STTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEEC-SBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECE
T ss_pred             ccccccccchhhhhhhhhhhhhhhhhcCCcccCC-CceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEE
Confidence              22346777888889999999999999988765 245777888742         00   1 12346677899999994


Q ss_pred             CCCCCCCC--CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          425 KNSVPGDK--SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       425 ~~~~Pg~~--~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      .+...+..  .....++|||+..      .+++++++..++|++.
T Consensus       377 PG~~F~~~~~~~~~~~~iRis~~------~~~~~l~~a~~rl~~~  415 (418)
T d1w7la_         377 PVSIFYSVPHQKHFDHYIRFCFV------KDEATLQAMDEKLRKW  415 (418)
T ss_dssp             EGGGGSCHHHHTTSCSEEEEECC------CCHHHHHHHHHHHHHH
T ss_pred             cchhhcCCCccCCCCCEEEEEEc------CCHHHHHHHHHHHHHH
Confidence            33221111  1234678999852      2477888888887653

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2.6e-24  Score=220.66  Aligned_cols=353  Identities=12%  Similarity=0.133  Sum_probs=235.3

Q ss_pred             ccccChHHHHHHHHHHHHhhccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 010008           74 LGEADPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA  151 (520)
Q Consensus        74 l~~~d~~~~~~~~~e~~~~~~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~l  151 (520)
                      +..+...++..+.+. .+..+.|+|..+..  ++|+.+++++...+.+. ..||+.   ..|   ..++.+...+++.+.
T Consensus         8 ~~~~~~~~~~~~~~~-a~~~~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~-~~~Y~~---~~G---~~~LReaia~~~~~~   79 (382)
T d1u08a_           8 LPQLGTTIFTQMSAL-AQQHQAINLSQGFPDFDGPRYLQERLAHHVAQG-ANQYAP---MTG---VQALREAIAQKTERL   79 (382)
T ss_dssp             CCCCCCCHHHHHHHH-HHHTTCEECCCSSCSSCCCHHHHHHHHHHHHTT-CCSCCC---TTC---CHHHHHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHHH-hccCCCEEccCCCCCCCCCHHHHHHHHHHHhcC-CCCCCC---CcC---CHHHHHHHHHHHHHH
Confidence            333344455555443 33457799988764  57889999998887654 235543   223   235665666888889


Q ss_pred             cCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCC
Q 010008          152 FNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVD  230 (520)
Q Consensus       152 fg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD  230 (520)
                      +|.+.+.- -+|.+|+|+ +|+..++++++++||.|++++|.+..+..        .....|.  ..+.++++.+.+.+|
T Consensus        80 ~g~~~~~~-~~I~vt~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~d  148 (382)
T d1u08a_          80 YGYQPDAD-SDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAP--------AIALSGG--IVKRMALQPPHFRVD  148 (382)
T ss_dssp             HSCCCCTT-TTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECCTTTCCCC
T ss_pred             hCCCCCCC-ceEEeccchHHHHHHHHhhcccccceEEEecccccchhh--------hhhhccc--cceecccccccccCC
Confidence            99864210 146678898 89999999999999999999997755431        2334454  333444555667899


Q ss_pred             HHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCC-CC---cc--cEE
Q 010008          231 YDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP-FK---YC--DVV  299 (520)
Q Consensus       231 ~d~le~~i~~~~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p-~~---~a--Div  299 (520)
                      ++++++.+.+ ++++|+++.|+||+  ..+   +++|.++|++++++++.|+.+. .....+..+.. ..   ..  -++
T Consensus       149 ~~~l~~~~~~-~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~-~~~~~~~~~~~~~~~~~~~~~~i~  226 (382)
T d1u08a_         149 WQEFAALLSE-RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYE-HINFSQQGHASVLAHPQLRERAVA  226 (382)
T ss_dssp             HHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTT-TCBCCSSCCCCGGGSHHHHTTEEE
T ss_pred             HHHHhhhhcc-CccEEEECCCCcccccccccccchhhhhhhccccceeeeecchh-hccccccccccccccccccCcEEE
Confidence            9999999988 89999999999987  444   5667777888999999998743 33333322211 11   12  278


Q ss_pred             EeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 010008          300 TTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL  377 (520)
Q Consensus       300 ~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l  377 (520)
                      +.|++|++  +|+|.||+++++      ++.+.+.........+.+...+.+ ++.+++.- ...+.+..+.+.++++.+
T Consensus       227 ~~s~SK~~~~pG~RiG~~v~~~------~~~~~~~~~~~~~~~~~~~~~q~a-~~~~l~~~-~~~~~~~~~~~~~~~~~l  298 (382)
T d1u08a_         227 VSSFGKTYHMTGWKVGYCVAPA------PISAEIRKVHQYLTFSVNTPAQLA-LADMLRAE-PEHYLALPDFYRQKRDIL  298 (382)
T ss_dssp             EEEHHHHTTCGGGCCEEEECCH------HHHHHHHHHHHHHTSSCCHHHHHH-HHHHHHHC-THHHHTHHHHHHHHHHHH
T ss_pred             EeeccccccCCcccchhhhccc------hhHHHHHhhhcccccccccccccc-cccccccc-hHHHHHHHHHHHhhhhhh
Confidence            89999975  899999999987      565554332211123344444443 44456543 334577788888889999


Q ss_pred             HHHHHHCCCEEecCCCCCeeEEEEecCC-CCCHHHH-HHHHhhcCeEEcCCCCCCCC---CCCCCCEEEEccCCccccCC
Q 010008          378 ASRLVELGYKLVSGGSDNHLVLVDLRPM-GIDGARV-EKILDMASITLNKNSVPGDK---SALVPGGIRIGSPAMTTRGF  452 (520)
Q Consensus       378 ~~~L~~~G~~v~~~gt~~~~~~vd~~~~-g~~~~~~-~~~L~~~gI~v~~~~~Pg~~---~~~~~~giRig~~~~tt~g~  452 (520)
                      .+.+...|+.+..+ ..+.++|+++... +++..++ .++|+++||.+    +||..   .+...+++||++.      .
T Consensus       299 ~~~~~~~g~~~~~p-~gg~~~~~~~~~~~~~d~~e~~~~ll~e~gV~v----~PG~~F~~~~~~~~~~Ris~~------~  367 (382)
T d1u08a_         299 VNALNESRLEILPC-EGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAA----IPLSVFCADPFPHKLIRLCFA------K  367 (382)
T ss_dssp             HHHTTSSSCEECCC-CBSSEEEEECTTTCCSCHHHHHHHHHHHSCEEC----EEGGGGCSSCCCSCEEEEECC------S
T ss_pred             hhhhccCCcEEecC-CceEEEEEecCCCCCCCHHHHHHHHHHHCCEEE----EcchhhCCCCCCCCEEEEEEe------C
Confidence            98888889988764 3467788888653 3566654 45668899999    55543   1234578999863      2


Q ss_pred             CHHHHHHHHHHHHH
Q 010008          453 SEKEFVAIADFIHE  466 (520)
Q Consensus       453 ~~~d~~~la~~i~~  466 (520)
                      .++++++..++|++
T Consensus       368 ~~e~l~~al~RL~~  381 (382)
T d1u08a_         368 KESTLLAAAERLRQ  381 (382)
T ss_dssp             CHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHhC
Confidence            46777777766653

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.92  E-value=1.1e-23  Score=219.34  Aligned_cols=342  Identities=15%  Similarity=0.129  Sum_probs=212.4

Q ss_pred             cceEecCCCCCh-HHHHHHHhhhhhcc-CCCCCCC---CCCCCcchhHHHHHHHHHHHHHHHcCC----CCCCCceeeec
Q 010008           95 SLELIASENFTS-RAVMEAVGSCLTNK-YSEGLPG---KRYYGGNEYIDELETLCQKRALAAFNL----DENKWGVNVQP  165 (520)
Q Consensus        95 ~i~Liasen~~~-~~V~ea~~s~l~~~-y~~G~p~---~ryy~g~~~~d~lE~~a~~~~~~lfg~----~~~~~~~~V~~  165 (520)
                      .|+|..+||..+ ..+.+.+.+..... ..++...   ...|+......++.+...+++.+.+|.    +++    +|.+
T Consensus        38 ~i~l~~aen~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e----~Ivi  113 (428)
T d1iaya_          38 VIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPE----RVVM  113 (428)
T ss_dssp             BEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTT----SCEE
T ss_pred             eEEeecccCccchHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCCCCCCChh----hEEE
Confidence            588988999754 44444443321110 0111000   001221112235666666888888874    344    4566


Q ss_pred             CChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccc-cccceEEEEEcccCCC-CCCCCHHHHHHHhh---
Q 010008          166 LSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS-GTSIYFESMPYRLDES-TGLVDYDMLEKTAI---  239 (520)
Q Consensus       166 ~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~-~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~---  239 (520)
                      ++|+ +|+..++.++++|||+|++++|.|.++..        .+. ..|.  ++++++++.+ ++.+|.++++.+++   
T Consensus       114 t~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~--------~~~~~~g~--~~v~v~~~~~~~~~~d~~~~~~~~~~~~  183 (428)
T d1iaya_         114 AGGATGANETIIFCLADPGDAFLVPSPYYPAFNR--------DLRWRTGV--QLIPIHCESSNNFKITSKAVKEAYENAQ  183 (428)
T ss_dssp             EEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHH--------HTTTTTCC--EEEEECCCTTTTTCCCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHH--------HHHHhcCC--eEEEeecccccccccccccccchhhhhh
Confidence            8887 89999999999999999999998865532        122 2344  6677766644 47899998865542   


Q ss_pred             --hcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCC-----------Ccc--cEE
Q 010008          240 --LFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-----------KYC--DVV  299 (520)
Q Consensus       240 --~~~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~-----------~~a--Div  299 (520)
                        ..++++++++.|+||+  ..   ++++|.++|+++|++||+|++| ..+++.+....++           ...  .++
T Consensus       184 ~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~  262 (428)
T d1iaya_         184 KSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIY-AATVFDTPQFVSIAEILDEQEMTYCNKDLVHI  262 (428)
T ss_dssp             HTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTT-GGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEE
T ss_pred             ccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccc-cccccCcccccccccccchhhccccccceEEE
Confidence              1256788899999987  44   4778999999999999999995 4555443221111           011  278


Q ss_pred             EeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHH--HHhcCchhHHHHHHHHHHHH
Q 010008          300 TTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCL--KHAQSPEFKVYQNKVVSNCR  375 (520)
Q Consensus       300 ~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al--~~~~~~~~~~~~~~i~~na~  375 (520)
                      +.|++|++  +|+|.|++++.++     .+.+.+........  .+.. ...++++.+  ........++..+.+.++++
T Consensus       263 ~~s~SK~~~~~GlRiG~~~~~~~-----~l~~~~~~~~~~~~--~~~~-~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~  334 (428)
T d1iaya_         263 VYSLSKDMGLPGFRVGIIYSFND-----DVVNCARKMSSFGL--VSTQ-TQYFLAAMLSDEKFVDNFLRESAMRLGKRHK  334 (428)
T ss_dssp             EEESTTTSSCGGGCEEEEEESCH-----HHHHHHHHHHTTSC--CCHH-HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCcccCCCccccccccccc-----chhhhhhhhhcccc--cccc-cccchhhhhhhhccccccccccccccchhHH
Confidence            89999976  7899999998763     45555443322211  1122 222222211  11111223556667777888


Q ss_pred             HHHHHHHHCCCEEecCCCCCeeEEEEecCC----CCCH-HH-HHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCcc
Q 010008          376 ALASRLVELGYKLVSGGSDNHLVLVDLRPM----GIDG-AR-VEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMT  448 (520)
Q Consensus       376 ~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~----g~~~-~~-~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~t  448 (520)
                      .+.+.|+..|+++..+ ..++++|++++..    ..+. .+ +.++|+++||.+    .||.. +...++++||+...  
T Consensus       335 ~~~~~L~~~gi~~~~p-~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v----~PG~~F~~~~~g~~Ris~a~--  407 (428)
T d1iaya_         335 HFTNGLEVVGIKCLKN-NAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNV----SPGSSFECQEPGWFRVCFAN--  407 (428)
T ss_dssp             HHHHHHHHTTCCBCCC-SSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEEC----EEGGGGTCSSSSEEEEECSS--
T ss_pred             HHHHHHHhCCCEEecC-CcceEEEEECccccccCCCCCHHHHHHHHHHhCCEEE----EcchhcCCCCCCEEEEEeCC--
Confidence            8999998899987654 3467788888632    1111 22 455678899999    45543 34457899998642  


Q ss_pred             ccCCCHHHHHHHHHHHHHHHH
Q 010008          449 TRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       449 t~g~~~~d~~~la~~i~~~l~  469 (520)
                         ..++++++..++|++++.
T Consensus       408 ---~~~~~l~~al~Rl~~~l~  425 (428)
T d1iaya_         408 ---MDDGTVDIALARIRRFVG  425 (428)
T ss_dssp             ---SCHHHHHHHHHHHHHHHH
T ss_pred             ---CCHHHHHHHHHHHHHHHh
Confidence               336778888888888775

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.92  E-value=1.4e-24  Score=221.57  Aligned_cols=326  Identities=13%  Similarity=0.131  Sum_probs=218.7

Q ss_pred             Eec-CCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHH
Q 010008           98 LIA-SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY  176 (520)
Q Consensus        98 Lia-sen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l  176 (520)
                      ||+ +.+.++++-++++...+...+         +..-++++++|    +++++++|.++     .|.++|||.|+.+++
T Consensus         2 ~ip~~~~~~~~~~~~~~~~~~~~~~---------~~~G~~v~~~E----~~la~~~g~~~-----ai~~~sgt~Al~~al   63 (376)
T d1mdoa_           2 FLPFSRPAMGAEELAAVKTVLDSGW---------ITTGPKNQELE----AAFCRLTGNQY-----AVAVSSATAGMHIAL   63 (376)
T ss_dssp             CBCSCCCCCCHHHHHHHHHHHHHTC---------CSSSHHHHHHH----HHHHHHHCCSE-----EEEESCHHHHHHHHH
T ss_pred             CccCCCCCCCHHHHHHHHHHHhcCC---------CcCCHHHHHHH----HHHHHHHCcCe-----EEEeCCHHHHHHHHH
Confidence            443 345566776777777776543         11225688888    78999999976     356689999999999


Q ss_pred             Hhh-CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC
Q 010008          177 TAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR  255 (520)
Q Consensus       177 ~al-l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~  255 (520)
                      .++ ++|||+|++++.++.+...        ++...|.  .++.++++++++.+|+++|++++++ +||+|++. +.++.
T Consensus        64 ~al~~~~gdeVi~~~~~~~~~~~--------ai~~~g~--~pv~~d~~~~~~~~d~~~l~~~i~~-~tkaIi~~-h~~G~  131 (376)
T d1mdoa_          64 MALGIGEGDEVITPSMTWVSTLN--------MIVLLGA--NPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPV-HYAGA  131 (376)
T ss_dssp             HHTTCCTTCEEEEESSSCHHHHH--------HHHHTTC--EEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCB-CGGGC
T ss_pred             HHhCCCCCCEEEEeccccccccc--------chhcccc--ceeeecccccccCCCHHHHHHhcCC-CCeEEEEe-CCCCC
Confidence            999 9999999999987755432        3445565  7888999988899999999999998 89998874 34556


Q ss_pred             CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCceEEEeeCCCcchhhHHHhhcccC
Q 010008          256 DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAV  335 (520)
Q Consensus       256 ~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i~~~~  335 (520)
                      ..|+++|.++|+++|++||.|+||+.|....+.....+ +..++.+..+|.++++.||+|+++++     ++.+++....
T Consensus       132 ~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~~~g~~-g~~~~Sf~~~K~l~~g~GG~i~t~~~-----~l~~~~~~~~  205 (376)
T d1mdoa_         132 PADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGAR-GTAIFSFHAIKNITCAEGGIVVTDNP-----QFADKLRSLK  205 (376)
T ss_dssp             CCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSS-SEEEEECCTTSSSCSSSCEEEEESCH-----HHHHHHHHHT
T ss_pred             ccchhHHHHHHHhcCceEEeccchhccCeeCCeecccc-cCccccCCCcCCCCCCCCCEEEEech-----hHHHHHHhhc
Confidence            78999999999999999999999999876655433222 23344455569999899999999985     4544433221


Q ss_pred             CC-----------------------CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEec-C
Q 010008          336 FP-----------------------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVS-G  391 (520)
Q Consensus       336 ~p-----------------------~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~-~  391 (520)
                      ..                       +.... .....|++.  +.++  ..+++..++..++++.+.+.|.+..+.... .
T Consensus       206 ~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~-~~~~~Aai~--~~qL--~~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~  280 (376)
T d1mdoa_         206 FHGLGVDAWDRQSGGRAPQAEVLAPGYKYN-LPDLNAAIA--LAQL--QKLDALNARRAAIAAQYHQAMADLPFQPLSLP  280 (376)
T ss_dssp             BTTEECC-----------CCEESSCCCBCC-CCHHHHHHH--HHHH--HTHHHHHHHHHHHHHHHHHHHHTSSCEECCCC
T ss_pred             ccCCcccccccccccccccccchhcccccc-cchhhhhhh--hhhh--hhhhHHHHHHhhhhhhhhhhcccccccccccc
Confidence            11                       11111 111223322  2222  245667788888899999999875443322 1


Q ss_pred             CC---CC-eeEEE--EecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC----------CC------CCCCEEEEccCCccc
Q 010008          392 GS---DN-HLVLV--DLRPMGIDGARVEKILDMASITLNKNSVPGDK----------SA------LVPGGIRIGSPAMTT  449 (520)
Q Consensus       392 gt---~~-~~~~v--d~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~----------~~------~~~~giRig~~~~tt  449 (520)
                      ..   .+ +.+..  +....+.+.+++.+.|.+.||.++..+.|.+.          ..      .....|.|.+.    
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~----  356 (376)
T d1mdoa_         281 SWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLF----  356 (376)
T ss_dssp             SSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCC----
T ss_pred             cccccccccccccccccccchhhHHHHHHHHHHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCC----
Confidence            11   11 12222  21112345677889999999998765433211          00      01234666433    


Q ss_pred             cCCCHHHHHHHHHHHHHHH
Q 010008          450 RGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       450 ~g~~~~d~~~la~~i~~~l  468 (520)
                      .+++++|++++++.|++++
T Consensus       357 ~~lt~~ei~~I~~~i~~i~  375 (376)
T d1mdoa_         357 PDMTESDFDRVITALHQIA  375 (376)
T ss_dssp             TTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            3578999999999998864

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.91  E-value=1.1e-23  Score=219.42  Aligned_cols=336  Identities=16%  Similarity=0.134  Sum_probs=213.2

Q ss_pred             cceEecCCCCCh-HHHHHHHhhhhhc--cCCC---------CCCCCCCCCcchhHHHHHHHHHHHHHHHcCC----CCCC
Q 010008           95 SLELIASENFTS-RAVMEAVGSCLTN--KYSE---------GLPGKRYYGGNEYIDELETLCQKRALAAFNL----DENK  158 (520)
Q Consensus        95 ~i~Liasen~~~-~~V~ea~~s~l~~--~y~~---------G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~----~~~~  158 (520)
                      .|+|..+||.+. +.+.+.+.+....  ....         .|+.   +.|   ..++.+...+++.+.+|.    +++ 
T Consensus        38 ~i~l~~~en~l~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G---~~~LR~aiA~~l~~~~~~~~~~~pe-  110 (431)
T d1m7ya_          38 IIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQD---YHG---LPAFKKAMVDFMAEIRGNKVTFDPN-  110 (431)
T ss_dssp             BEECSSCCCCSCHHHHHHHHHHCCTGGGTEETTEECHHHHHHCCC---TTC---CHHHHHHHHHHHHHHTTTSSCCCGG-
T ss_pred             EEEeecccccccHHHHHHHHHhCCchhhhhhhhhhccHHhcCCcC---CcC---cHHHHHHHHHHHHHHhCCCCCCCcc-
Confidence            489999999754 4444444321110  0000         1332   223   235665666788888873    343 


Q ss_pred             CceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccc-cccceEEEEEcccCCCC-CCCCHHHHH
Q 010008          159 WGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS-GTSIYFESMPYRLDEST-GLVDYDMLE  235 (520)
Q Consensus       159 ~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~-~~g~~~~~v~~~~d~~~-~~iD~d~le  235 (520)
                         +|.+++|+ +|+.+++.++++|||+|++++|.|+++..        .+. ..|.  +++++++++++ +.+|.+.++
T Consensus       111 ---~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~--------~~~~~~g~--~~v~v~~~~~~~~~l~~~~~~  177 (431)
T d1m7ya_         111 ---HLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDR--------DLKWRTGV--EIVPIHCTSSNGFQITETALE  177 (431)
T ss_dssp             ---GEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HTTTTTCC--EEEEEECCGGGTSCCCHHHHH
T ss_pred             ---eEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHH--------HHHHhcCc--eeccccccchhcccccHHHhh
Confidence               67778998 99999999999999999999998765432        122 2343  66777776543 679999998


Q ss_pred             HHhhh-----cCCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCC------------
Q 010008          236 KTAIL-----FRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF------------  293 (520)
Q Consensus       236 ~~i~~-----~~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~------------  293 (520)
                      +.+.+     .++++++++.|+||+  ..   ++++|.++|+++|++||+|+++ ..+++.+....++            
T Consensus       178 ~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y-~~~~~~~~~~~s~~~~~~~~~~~~~  256 (431)
T d1m7ya_         178 EAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIY-SGTAFSSPSFISVMEVLKDRNCDEN  256 (431)
T ss_dssp             HHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTT-GGGCCSSSCCCCHHHHTTTTTCSSS
T ss_pred             hhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccc-cccccCCCCCCCHHHHhhhcccccc
Confidence            77653     256788999999997  33   4778889999999999999984 4444433211100            


Q ss_pred             C-cc--cEEEeccCccc--CCCCceEEEeeCCCcchhhHH-HhhcccCCCCCCCCChHHHHHHHHHHHH--HhcCchhHH
Q 010008          294 K-YC--DVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELE-SAINNAVFPGLQGGPHNHTIGGLAVCLK--HAQSPEFKV  365 (520)
Q Consensus       294 ~-~a--Div~~S~hK~l--~GprgG~I~~~~~~~~~~~l~-~~i~~~~~p~~~g~p~~~~iaala~al~--~~~~~~~~~  365 (520)
                      . ..  -+++.|++|.+  +|.|.|+++.++      ++. ..........  +.+.. ...+++..+.  ........+
T Consensus       257 ~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~------~~i~~~~~~~~~~~--~~~~~-~~~~~~a~l~~~~~~~~~~~~  327 (431)
T d1m7ya_         257 SEVWQRVHVVYSLSKDLGLPGFRVGAIYSND------DMVVAAATKMSSFG--LVSSQ-TQHLLSAMLSDKKLTKNYIAE  327 (431)
T ss_dssp             SSGGGGEEEEEESSSSSCCGGGCEEEEEESC------HHHHHHHHHHGGGS--CCCHH-HHHHHHHHHHCHHHHHHHHHH
T ss_pred             cccCceEEEEecCcccccCCCCccceeccch------hhhHHHHHHHhccc--ccccc-ccchhhhhhccchhhhhhhhh
Confidence            0 11  27789999986  689999999987      443 2222221111  11122 2222222221  111122355


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCC--CC---H-HHHHHHHhhcCeEEcCCCCCCCC-CCCCCC
Q 010008          366 YQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMG--ID---G-ARVEKILDMASITLNKNSVPGDK-SALVPG  438 (520)
Q Consensus       366 ~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g--~~---~-~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~  438 (520)
                      ..+++.++++.+.+.|++.|+++..+ ..+.++|++++..-  .+   . +.+.++|+++||.+    .||.. +...++
T Consensus       328 ~~~~~~~~~~~l~~~L~~~gi~~~~p-~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v----~PG~~F~~~~~~  402 (431)
T d1m7ya_         328 NHKRLKQRQKKLVSGLQKSGISCLNG-NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNI----SPGSSCHCTEPG  402 (431)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCEECCC-CSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEEC----EEGGGGTCSSTT
T ss_pred             hhhhhhhhhhhhhhhhhcCCcEEecC-CceeEEEEECccccccCcccCHHHHHHHHHHHCCEEE----EeccccCCCCCC
Confidence            66777788888999999899998765 34577888885321  11   1 23556778899999    55544 334568


Q ss_pred             EEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          439 GIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       439 giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      ++||+...     .+++++++..+.|+++++.
T Consensus       403 ~~Ri~~a~-----~~e~~l~~al~rL~~~l~~  429 (431)
T d1m7ya_         403 WFRVCFAN-----LPERTLDLAMQRLKAFVGE  429 (431)
T ss_dssp             EEEEECSS-----SCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCc-----CCHHHHHHHHHHHHHHHHH
Confidence            99998642     3467888888888887753

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.91  E-value=5.3e-24  Score=223.24  Aligned_cols=315  Identities=17%  Similarity=0.145  Sum_probs=215.1

Q ss_pred             CCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccc
Q 010008          126 PGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPK  205 (520)
Q Consensus       126 p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~  205 (520)
                      .|.+.|+|++.+.+||    ++++++||.++     -|.++||+.||.+++.++++|||+|+.....+. +..       
T Consensus        66 ~GDd~Y~~dpt~~~lE----~~~a~l~G~e~-----al~~~SGt~An~~a~~~l~~~Gd~Vi~~~~f~~-~~~-------  128 (456)
T d1c7ga_          66 IGDEAYAGSENFYHLE----KTVKELFGFKH-----IVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTT-TRF-------  128 (456)
T ss_dssp             SCCCCSSSCHHHHHHH----HHHHHHHCCSE-----EEEESSHHHHHHHHHHHHCCTTEEEEESSCCHH-HHH-------
T ss_pred             ccchhccCCchHHHHH----HHHHHHhCCCe-----EEECCCHHHHHHHHHHHhcCCCCeEecCcchHH-HHH-------
Confidence            4556799999999999    67889999997     366799999999999999999999996543111 100       


Q ss_pred             cccccccceEEEEEccc---------CCCCCCCCHHHHHHHhhhcC---CcEEEEcCCCCCC---CC---CHHHHHHHHH
Q 010008          206 RRVSGTSIYFESMPYRL---------DESTGLVDYDMLEKTAILFR---PKLIIAGASAYPR---DF---DYPRMRQIAD  267 (520)
Q Consensus       206 ~~v~~~g~~~~~v~~~~---------d~~~~~iD~d~le~~i~~~~---pklIi~~~s~~p~---~~---d~~~i~~ia~  267 (520)
                       .+...|.  .++.+..         ++.++.+|+++|++.+++..   +.++++..++|+.   ..   ++++|+++|+
T Consensus       129 -~i~~~g~--~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~  205 (456)
T d1c7ga_         129 -HQEKNGA--TFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMAS  205 (456)
T ss_dssp             -HHHHTTE--EEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHH
T ss_pred             -HHHHcCc--eeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHH
Confidence             1122232  3332211         23357899999999998743   2467777666542   33   5778889999


Q ss_pred             HhCCEEEEechhhcccccc------cccCC--------CCCcccEEEeccCcccCCCCceEEEeeCCCcchhhHHHhhcc
Q 010008          268 AVGALLMMDMAHISGLVAA------SVVAD--------PFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINN  333 (520)
Q Consensus       268 ~~g~~li~D~Ah~~gli~~------~~~~~--------p~~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i~~  333 (520)
                      +||+.++.|+||+.|....      +....        .+.++|++++|+||.+.++.||+++++++     ++.++++.
T Consensus       206 ~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~GG~i~~~~~-----~l~~~~r~  280 (456)
T d1c7ga_         206 TYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDE-----EMFSAAKE  280 (456)
T ss_dssp             HHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSCEEEEESCH-----HHHHHHHH
T ss_pred             HcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccceeEEEcCCH-----HHHHHHHH
Confidence            9999999999988764211      11111        12368999999999999999999999885     55555432


Q ss_pred             c----CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecC--CC-
Q 010008          334 A----VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRP--MG-  406 (520)
Q Consensus       334 ~----~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~--~g-  406 (520)
                      .    .....+|+.....++++++.+.+...   .++.++..+++++|.+.|.+.|+.++.+ ...|.+.+|...  .. 
T Consensus       281 ~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~---~~~l~~r~~~~~~L~e~L~~~g~~vv~p-~g~~~v~vda~~~~~~i  356 (456)
T d1c7ga_         281 LVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ---YEYIEHRVKQVRYLGDKLREAGVPIVEP-TGGHAVFLDARRFCPHL  356 (456)
T ss_dssp             HHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHHTTCCBCSS-CCSSEEEEEHHHHCTTS
T ss_pred             hccccCCCcccchhhHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHhccCCcccC-CCCcceeEechhhccCC
Confidence            1    12223566677788888888887654   3566777888999999999999988875 356777776431  11 


Q ss_pred             ----CCH-HHHHHHHhhcCeEEcCC-C-----CCCCC--CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHHH
Q 010008          407 ----IDG-ARVEKILDMASITLNKN-S-----VPGDK--SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITL  472 (520)
Q Consensus       407 ----~~~-~~~~~~L~~~gI~v~~~-~-----~Pg~~--~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~~  472 (520)
                          ..+ ..+.+++.+.||.+... +     .|...  .......+|+++|.   +.+|+++|+++++.|+++.+...
T Consensus       357 ~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~---~~~T~e~iD~Vae~i~~v~~~~~  432 (456)
T d1c7ga_         357 TQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPR---RVYTYAHMDVVADGIIKLYQHKE  432 (456)
T ss_dssp             CGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCT---TSCCHHHHHHHHHHHHHHHTTGG
T ss_pred             CcccccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCc---ccCCHHHHHHHHHHHHHHHhhhh
Confidence                112 23556667889975321 1     11111  11134569998763   34689999999999999887653

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.91  E-value=8.2e-23  Score=207.98  Aligned_cols=333  Identities=13%  Similarity=0.080  Sum_probs=224.0

Q ss_pred             cceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHH
Q 010008           95 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE  174 (520)
Q Consensus        95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~  174 (520)
                      .+-++++...+|+.|++||.....+           ..+.++.+.++ .+++.+++++|++.++.  .+.+.+||.++.+
T Consensus        19 ~~l~~PGP~~v~~~Vl~am~~~~~~-----------hr~~ef~~i~~-~~r~~l~~ll~~~~~~~--i~~~g~gT~~~~~   84 (377)
T d1vjoa_          19 RLLLGPGPSNAHPSVLQAMNVSPVG-----------HLDPAFLALMD-EIQSLLRYVWQTENPLT--IAVSGTGTAAMEA   84 (377)
T ss_dssp             CEECSSSCCCCCHHHHHHHSSCCCC-----------TTSHHHHHHHH-HHHHHHHHHHTCCCSCE--EEESSCHHHHHHH
T ss_pred             ceeecCCCCCCCHHHHHHhCcCCCC-----------CCCHHHHHHHH-HHHHHHHHHhCCCCCeE--EEEcCcHHHHHHH
Confidence            4667788889999999998543221           12456666666 57899999999975432  2445667899999


Q ss_pred             HHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC
Q 010008          175 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP  254 (520)
Q Consensus       175 ~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p  254 (520)
                      ++..++.+||++++....+.+.....      .....+.....+.  .. .+...+.+..+......+++++.+...++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  155 (377)
T d1vjoa_          85 TIANAVEPGDVVLIGVAGYFGNRLVD------MAGRYGADVRTIS--KP-WGEVFSLEELRTALETHRPAILALVHAETS  155 (377)
T ss_dssp             HHHHHCCTTCEEEEEESSHHHHHHHH------HHHHTTCEEEEEE--CC-TTCCCCHHHHHHHHHHHCCSEEEEESEETT
T ss_pred             HHHhccccccccceeeechhhhhhhh------hhhhhcccccccc--cC-CCCcccchhhhhhhhcCcceeeeeeeeecc
Confidence            99999999999998875443221110      1112233222222  22 234556666665555558999888754433


Q ss_pred             --CCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhh
Q 010008          255 --RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI  331 (520)
Q Consensus       255 --~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i  331 (520)
                        ...|+++|.++|+++|+++++|++|++|.+..+....   ++|++++|.||++.||.| |+++.++      +..+..
T Consensus       156 tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~---~~d~~~~s~~K~~~gp~g~~~~~~~~------~~~~~~  226 (377)
T d1vjoa_         156 TGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAW---GVDLAYSCSQKGLGCSPGASPFTMSS------RAIEKL  226 (377)
T ss_dssp             TTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTT---TCSEEECCSSSTTCSCSSCEEEEECH------HHHHHH
T ss_pred             ceeeechhhhhhhhhhccceEEEecchhhhhhhhccccc---ccceeeecccccccCCCEEEEecchh------hHHhhh
Confidence              3889999999999999999999999988765443332   589999999999999988 5555554      232221


Q ss_pred             ccc-------------------CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCC
Q 010008          332 NNA-------------------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGG  392 (520)
Q Consensus       332 ~~~-------------------~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~g  392 (520)
                      ...                   ......+++....+.++..++......+.+...++..++++.+.+.|.+.|+.++.+.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  306 (377)
T d1vjoa_         227 QRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEK  306 (377)
T ss_dssp             HTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCG
T ss_pred             hccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhccCceeecCh
Confidence            111                   1112345666767666666666655555677788888889999999988888765431


Q ss_pred             --CCCeeEEEEecCCCCCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEcc-CCccccCCCHHHHHHHHHHHHHHH
Q 010008          393 --SDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGS-PAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       393 --t~~~~~~vd~~~~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~-~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                        ..+..+.+.+ +.+++++++.+.| ++.||.+..+.     +....+.||||+ ...+    +++|+++++++|++++
T Consensus       307 ~~rs~~v~~~~~-p~~~~~~~l~~~L~~~~gI~v~~G~-----~~~~~~~~Ris~~g~~~----t~edi~~lv~al~~~l  376 (377)
T d1vjoa_         307 EYRLPTLTTVCI-PDGVDGKAVARRLLNEHNIEVGGGL-----GELAGKVWRVGLMGFNS----RKESVDQLIPALEQVL  376 (377)
T ss_dssp             GGBCSSEEEEEC-CTTCCHHHHHHHHHHHHCEECEECC-----GGGTTTEEEEECCGGGC----SHHHHHHHHHHHHHHH
T ss_pred             HhcCCeEEEEEC-CCCCCHHHHHHHHHhcCCEEEecCc-----ccccCCEEEEecCcCCC----CHHHHHHHHHHHHHHh
Confidence              1223334444 4578888887665 67899985432     123456899996 4444    3799999999999886


Q ss_pred             H
Q 010008          469 E  469 (520)
Q Consensus       469 ~  469 (520)
                      +
T Consensus       377 ~  377 (377)
T d1vjoa_         377 R  377 (377)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.91  E-value=2e-23  Score=215.20  Aligned_cols=362  Identities=15%  Similarity=0.077  Sum_probs=219.4

Q ss_pred             chhhhhccccChH-HHHHHHHHHHHhhccceEecCCC----CChHHHHHHHhhhhhccC--CCCCCCCCCCCcchhHHHH
Q 010008           68 SFVDYSLGEADPE-VCEIITKEKERQFKSLELIASEN----FTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDEL  140 (520)
Q Consensus        68 ~~~~~~l~~~d~~-~~~~~~~e~~~~~~~i~Liasen----~~~~~V~ea~~s~l~~~y--~~G~p~~ryy~g~~~~d~l  140 (520)
                      .++.++....-+. +.++++  .....+.|+|..+..    ++.+.+.+++...+.+.-  ..+|+.      .....++
T Consensus         5 ~~~~~~~~~~~~s~ire~~~--~~~~~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~------~~G~~~l   76 (403)
T d1wsta1           5 SFFSEKAMLMKASEVRELLK--LVETSDVISLAGGLPAPETFPVETIKKIAVEVLEEHADKALQYGT------TKGFTPL   76 (403)
T ss_dssp             GGCCHHHHHCCCHHHHHHHH--HHTSSSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCC------SSCCHHH
T ss_pred             HHHHHHHhcCCCcHHHHHHH--HhCCCCcEECCCCCCCccccCHHHHHHHHHHHHHhCcccccCCCC------CcCCHHH
Confidence            3444444444333 333322  122347788865532    234566677766654321  112332      2223466


Q ss_pred             HHHHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEE
Q 010008          141 ETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMP  219 (520)
Q Consensus       141 E~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~  219 (520)
                      ++...+++.+.+|.+.+.  -+|.+|+|+ +++..++.++++|||+|++++|.|..+..        .+...|.  +.+.
T Consensus        77 R~aia~~l~~~~g~~~~~--~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~--------~~~~~g~--~~~~  144 (403)
T d1wsta1          77 RLALARWMEKRYDIPMSK--VEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQ--------AFKYYDP--EFIS  144 (403)
T ss_dssp             HHHHHHHHHHHHCCCCTT--CEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHTTCC--EEEE
T ss_pred             HHHHHHHHHHHhCCCCCh--HHeeecccchHHHHHHHHHHhhcCCccccCCCcchhhhH--------HHhhccc--ccee
Confidence            666678888888875322  267778988 99999999999999999999998765432        2334454  5555


Q ss_pred             cccCCCCCCCCHHHH----HHHhhhc--CCcEEEEcCCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccc
Q 010008          220 YRLDESTGLVDYDML----EKTAILF--RPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV  288 (520)
Q Consensus       220 ~~~d~~~~~iD~d~l----e~~i~~~--~pklIi~~~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~  288 (520)
                      ++.+.+.  .|...+    ++.....  .+.+++++.++||+  ..+   +++|.++|++||++||+|+++ ..+.+.+.
T Consensus       145 v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y-~~l~~~~~  221 (403)
T d1wsta1         145 IPLDDKG--MRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPY-SELRYSGE  221 (403)
T ss_dssp             EEEETTE--ECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT-TTCBCSSC
T ss_pred             EeecccC--CccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccch-hheecCCC
Confidence            5555322  222222    1222221  23455666888987  444   667888899999999999994 55555544


Q ss_pred             cCCCCC-----cccEEEeccCccc-CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHh-cCc
Q 010008          289 VADPFK-----YCDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA-QSP  361 (520)
Q Consensus       289 ~~~p~~-----~aDiv~~S~hK~l-~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~-~~~  361 (520)
                      ...++.     ...+++.|++|++ +|+|.||+++++      ++.+.+.........+.+...+. +.+..+... ...
T Consensus       222 ~~~~~~~~~~~~~~i~~~S~SK~~~~G~RiG~~i~~~------~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  294 (403)
T d1wsta1         222 PTPPIKHFDDYGRVIYLGTFSKILAPGFRIGWVAAHP------HLIRKMEIAKQSIDLCTNTFGQA-IAWKYVENGYLDE  294 (403)
T ss_dssp             CCCCGGGGCSSSCEEEEEESTTTTCGGGCCEEEEECH------HHHHHHHHHHHHHHSSCCHHHHH-HHHHHHHTTHHHH
T ss_pred             CCCcccccCCCCcEEEEccccceecCcccccccccch------HHHHHHHHHHhhhccccccchhh-hHHhhhhccccch
Confidence            333332     2337889999987 688999999987      56554433211111222222222 222112111 111


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH---CCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC---CCC
Q 010008          362 EFKVYQNKVVSNCRALASRLVE---LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK---SAL  435 (520)
Q Consensus       362 ~~~~~~~~i~~na~~l~~~L~~---~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~---~~~  435 (520)
                      ..++..+.+..+++.+.+.|.+   .|+....+ ..+.++|+++. .+++.+.+.+.|.+.||.+    .||+.   ...
T Consensus       295 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~p-~gg~~~~~~~~-~~~~~~~~~~~l~~~gV~v----~pg~~f~~~~~  368 (403)
T d1wsta1         295 HIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKP-EGGMFVRVTLP-EGIDTKLMMERAVAKGVAY----VPGEAFFVHRD  368 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCC-SBSSEEEEECC-TTCCTTTTHHHHHHTTEEC----EEGGGGSTTCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCeEEeCC-CceeEEEEECC-CCCCHHHHHHHHHHCCEEE----EechhhcCCCC
Confidence            2355667777778888888876   36666544 33567788874 5677788888899999998    45432   122


Q ss_pred             CCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          436 VPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       436 ~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      .++++||+...     .+++++++.++.|.++++.
T Consensus       369 ~~~~iRi~~~~-----~~~~~l~~al~rl~~~l~~  398 (403)
T d1wsta1         369 KKNTMRLNFTY-----VPEETIREGVRRLAETIKE  398 (403)
T ss_dssp             CCSEEEEECSS-----SCHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEecC-----CCHHHHHHHHHHHHHHHHH
Confidence            46799998642     3478899999999888874

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.8e-24  Score=226.34  Aligned_cols=327  Identities=18%  Similarity=0.207  Sum_probs=221.4

Q ss_pred             CCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccc
Q 010008          122 SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGF  201 (520)
Q Consensus       122 ~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~  201 (520)
                      +...+|.+.|++++.+++||    ++++++||.+.     .+.++||++||..++.+++++||.++..+..++.+.+|.+
T Consensus        61 a~~~~gd~~Y~~~~~~~~le----~~~a~l~G~~~-----~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~  131 (467)
T d2v1pa1          61 AAMMRGDEAFSGSRSYYALA----ESVKNIFGYQY-----TIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYF  131 (467)
T ss_dssp             HHTTSCCCCSSSCHHHHHHH----HHHHHHTCCSE-----EEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSC
T ss_pred             hhccccchhhcCCchHHHHH----HHHHHHHCCCE-----EEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEeccc
Confidence            34456778899999999998    67889999986     3667999999999999999999999988887777766655


Q ss_pred             cccc-cccccccceEEEEEcccC---------CCCCCCCHHHHHHHhhhcC---CcEEEEcCCCCC---CC---CCHHHH
Q 010008          202 MTPK-RRVSGTSIYFESMPYRLD---------ESTGLVDYDMLEKTAILFR---PKLIIAGASAYP---RD---FDYPRM  262 (520)
Q Consensus       202 ~~~~-~~v~~~g~~~~~v~~~~d---------~~~~~iD~d~le~~i~~~~---pklIi~~~s~~p---~~---~d~~~i  262 (520)
                      .... ..+...|.  .++.++.+         ...+.+|++++++.+++..   +++|++...++.   ..   .++++|
T Consensus       132 ~~~~~~~~~~~G~--~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i  209 (467)
T d2v1pa1         132 FDTTQGHSQINGC--TVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAM  209 (467)
T ss_dssp             CHHHHHHHHHTTC--EEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHH
T ss_pred             ccccHHHHHHcCC--eeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHH
Confidence            3221 22344555  44443332         1246799999999998644   355666543332   13   368899


Q ss_pred             HHHHHHhCCEEEEechhhcccccccc------cCC--------CCCcccEEEeccCcccCCCCceEEEeeCCCcchhhHH
Q 010008          263 RQIADAVGALLMMDMAHISGLVAASV------VAD--------PFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELE  328 (520)
Q Consensus       263 ~~ia~~~g~~li~D~Ah~~gli~~~~------~~~--------p~~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~  328 (520)
                      ++||++||++|++|+||..|....+.      ...        .+.++|++++|+||.+.+|.||+++++++     .+.
T Consensus       210 ~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~gg~i~~~~~-----~~~  284 (467)
T d2v1pa1         210 YSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDD-----SFF  284 (467)
T ss_dssp             HHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSCEEEEECSG-----GGH
T ss_pred             HHHHHHcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCceeEEecch-----hhh
Confidence            99999999999999999877543211      111        12368999999999999999999999884     222


Q ss_pred             Hhh--------cccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEE
Q 010008          329 SAI--------NNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV  400 (520)
Q Consensus       329 ~~i--------~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~v  400 (520)
                      ...        ....++ ..++.....++++++.+.+...   .++.++..+++++|.+.|.+.|+.+...  ..|...+
T Consensus       285 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~v~~~--~~~~~~~  358 (467)
T d2v1pa1         285 DVYTECRTLCVVQEGFP-TYGGLEGGAMERLAVGLYDGMN---LDWLAYRIAQVQYLVDGLEEIGVVCQQA--GGHAAFV  358 (467)
T ss_dssp             HHHHHHHHHHHHTTSSC-CCCCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHTTCCEEEE--CSSCEEE
T ss_pred             hHHHhhcccccccccCc-chhhhHHHHHHHHHHHhHHhhh---HHHHHHHHHHHHHHHHHHHhcCCcccCC--Cccceee
Confidence            111        111122 2344455566666655655433   5677888899999999999988776543  3455555


Q ss_pred             EecCC--CC-----C-HHHHHHHHhhcCeEEcCCCC------C--CCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHH
Q 010008          401 DLRPM--GI-----D-GARVEKILDMASITLNKNSV------P--GDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI  464 (520)
Q Consensus       401 d~~~~--g~-----~-~~~~~~~L~~~gI~v~~~~~------P--g~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i  464 (520)
                      +....  ..     . ...+.+++.+.||.+.....      |  +...+.....+|++.|.   +.+|++||+++++.|
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~---~~~T~eeiD~vv~~l  435 (467)
T d2v1pa1         359 DAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPR---ATYTQTHMDFIIEAF  435 (467)
T ss_dssp             EHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCT---TTCCHHHHHHHHHHH
T ss_pred             cchhhcCCcchhhhhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCC---CCCCHHHHHHHHHHH
Confidence            53211  11     1 13366777899997643321      1  11123456789997653   447899999999999


Q ss_pred             HHHHHHHHH
Q 010008          465 HEGVEITLE  473 (520)
Q Consensus       465 ~~~l~~~~~  473 (520)
                      +++++...+
T Consensus       436 ~~v~~~~~~  444 (467)
T d2v1pa1         436 KHVKENAAN  444 (467)
T ss_dssp             HHHHHTGGG
T ss_pred             HHHHHHHHh
Confidence            999876543

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=5.8e-23  Score=210.04  Aligned_cols=331  Identities=16%  Similarity=0.099  Sum_probs=219.4

Q ss_pred             EecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC-CCCCceeeecCChHHHHHHHH
Q 010008           98 LIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVY  176 (520)
Q Consensus        98 Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~-~~~~~~~V~~~sGs~A~~~~l  176 (520)
                      |++++.++++.|++||....        .+.|   +.++.+.++ .+++.++++++.. ++++...+...|||+++.+++
T Consensus         7 ~~PGP~~v~~~V~~Am~~~~--------~~hr---~~~f~~~~~-~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~   74 (382)
T d2bkwa1           7 LIPGPIILSGAVQKALDVPS--------LGHT---SPEFVSIFQ-RVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFA   74 (382)
T ss_dssp             CSSSSCCCCHHHHHTTSCCC--------CCTT---SHHHHHHHH-HHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHH
T ss_pred             cCCCCCCCCHHHHHHhCccc--------CCCC---cHHHHHHHH-HHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHH
Confidence            56788889999999985322        1211   234444444 5667888898862 222223345567789999999


Q ss_pred             HhhC---CCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC
Q 010008          177 TAIL---KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY  253 (520)
Q Consensus       177 ~all---~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~  253 (520)
                      .+++   +|||+|++....+.++.   +..   .....+.....  +...+....++.+.+++.+...+++++++...++
T Consensus        75 ~~l~~~~~~gd~vlv~~~~~~~~~---~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  146 (382)
T d2bkwa1          75 SNFILSKAPNKNVLVVSTGTFSDR---FAD---CLRSYGAQVDV--VRPLKIGESVPLELITEKLSQNSYGAVTVTHVDT  146 (382)
T ss_dssp             HHHSCTTCSCCEEEEECSSHHHHH---HHH---HHHHTTCEEEE--ECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEET
T ss_pred             HHHHHhcCCCCceEEEEechhhhh---hhh---hcccccccccc--ccccCCCCccchhHHHHHhhhccchheeeeeccc
Confidence            9986   68999999875433221   110   11223332222  2223234578899998888777899988875443


Q ss_pred             --CCCCCHHHHHHHHHHhC--CEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHH
Q 010008          254 --PRDFDYPRMRQIADAVG--ALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE  328 (520)
Q Consensus       254 --p~~~d~~~i~~ia~~~g--~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~  328 (520)
                        +...|++.+.++|++++  +++++|++|++|.+..+....   ++|++++|.||||.||.| |+++.+++      ..
T Consensus       147 ~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~~---giD~~~~s~~K~l~gP~G~g~l~vs~~------~~  217 (382)
T d2bkwa1         147 STAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEW---GVDFALTASQKAIGAPAGLSISLCSSR------FM  217 (382)
T ss_dssp             TTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTT---TCSEEEEESSSTTCCCSCEEEEEECHH------HH
T ss_pred             cccccccchhhhhhccccccceeeeeeccccccccccccccc---CeeEEeecccccCcCCCchhhhhccHH------HH
Confidence              44889999999988875  999999999998775443332   699999999999999999 99999873      22


Q ss_pred             Hhhcc-------------------------cCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Q 010008          329 SAINN-------------------------AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE  383 (520)
Q Consensus       329 ~~i~~-------------------------~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~  383 (520)
                      +++..                         .......++|+...++++..||+.+...+.+...++..+.++++.+.+.+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~  297 (382)
T d2bkwa1         218 DYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVN  297 (382)
T ss_dssp             HHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhh
Confidence            21110                         00112357899999999999999887667777777777778888888866


Q ss_pred             -CCCEEecCC---CCC-eeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHH
Q 010008          384 -LGYKLVSGG---SDN-HLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFV  458 (520)
Q Consensus       384 -~G~~v~~~g---t~~-~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~  458 (520)
                       .++..+...   ... .++.+.+    .++.++.+.|+++||.+..+.    ......+.+|||+..+++   +++|++
T Consensus       298 ~~~~~~~~~~~~~~~s~~v~~~~~----~~~~~~~~~L~~~gi~i~~G~----~~~~~~~~~Ri~~~G~~~---~~e~i~  366 (382)
T d2bkwa1         298 GLQLTSVSRYPSNMSAHGLTAVYV----ADPPDVIAFLKSHGVVIAGGI----HKDIGPKYIRIGHMGVTA---CNKNLP  366 (382)
T ss_dssp             TTCCEESSCSSSTTBCSSCEEEEC----SCHHHHHHHHHHTTEECBCCC----CTTTGGGEEEECCCGGGT---SSTTCT
T ss_pred             cccccccccCchhccCCcEEEEcC----CCHHHHHHHHHHCCeEEECCC----ChhhcCCEEEEeCCcCCC---CHHHHH
Confidence             455554321   111 2233333    257889999999999986432    122345679999643332   256777


Q ss_pred             HHHHHHHHHH
Q 010008          459 AIADFIHEGV  468 (520)
Q Consensus       459 ~la~~i~~~l  468 (520)
                      ++.++|+.+.
T Consensus       367 ~l~~~l~~i~  376 (382)
T d2bkwa1         367 YMKNCFDLIK  376 (382)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777776543

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=5.8e-22  Score=200.57  Aligned_cols=325  Identities=15%  Similarity=0.096  Sum_probs=219.7

Q ss_pred             EecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHH
Q 010008           98 LIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT  177 (520)
Q Consensus        98 Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~  177 (520)
                      |++++..+|+.|++||.....++           .+.++.+.++ .+++.++++|+.+++   +.+.+.|||.|+.+++.
T Consensus         4 ~~PGP~~v~~~V~~am~~~~~~h-----------r~~~f~~i~~-~~~~~l~~ll~~~~~---~i~~~gsgT~a~e~~~~   68 (348)
T d1iuga_           4 LTPGPVRLHPKALEALARPQLHH-----------RTEAAREVFL-KARGLLREAFRTEGE---VLILTGSGTLAMEALVK   68 (348)
T ss_dssp             CSSSSCCCCHHHHHHHHSCCCCT-----------TSHHHHHHHH-HHHHHHHHHHTCSSE---EEEEESCHHHHHHHHHH
T ss_pred             cCCCCCCCCHHHHHHhcCCCCCC-----------CCHHHHHHHH-HHHHHHHHHhCCCCC---EEEEeCchHHHHHHHHH
Confidence            67888889999999997643322           1344454444 678999999998764   34567788899999999


Q ss_pred             hhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC--CC
Q 010008          178 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PR  255 (520)
Q Consensus       178 all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~--p~  255 (520)
                      .+++|||+|++...   |+++..+.   ......+..++...++.   ...++.++   .. ..+++.+++.+..+  +.
T Consensus        69 nl~~~g~~vlv~~~---G~f~~~~~---~~a~~~~~~~~~~~~~~---g~~~~~~~---~~-~~~~~~v~~~h~eTstG~  135 (348)
T d1iuga_          69 NLFAPGERVLVPVY---GKFSERFY---EIALEAGLVVERLDYPY---GDTPRPED---VA-KEGYAGLLLVHSETSTGA  135 (348)
T ss_dssp             HHCCTTCEEEEEEC---SHHHHHHH---HHHHHTTCEEEEEECCT---TCCCCTTT---SC-CSSCSEEEEESEETTTTE
T ss_pred             hcccccccceeecc---hHHHHHHH---HHHHhcCcccccccccC---CCcccccc---cc-ccCCCeeEEEecchhhhh
Confidence            99999999998864   33222211   11222344334433322   22344333   22 33788888875443  44


Q ss_pred             CCCHHHHHHHHHHhC--CEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhc
Q 010008          256 DFDYPRMRQIADAVG--ALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAIN  332 (520)
Q Consensus       256 ~~d~~~i~~ia~~~g--~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~  332 (520)
                      ..|+++|.++|++++  +++++|+.++.|....+...+   ++|++++|.||+|.||.| |+++.++      +..+++.
T Consensus       136 ~~~i~~i~~~~~~~~~~~l~~vDavss~g~~~i~~d~~---~iD~~~~~sqK~l~gppG~~~v~~s~------~~le~~~  206 (348)
T d1iuga_         136 LADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAM---GVDAAASGSQKGLMCPPGLGFVALSP------RALERLK  206 (348)
T ss_dssp             ECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGG---TCSEEEEESSSTTCCCSCEEEEEECH------HHHHTCC
T ss_pred             hccHHHHHHHHHhhhccceeechhhhcccccccccccc---cCCEEEeccccceecCCceeeeeech------HHHhhhc
Confidence            889999999999985  899999988877653332222   589999999999999999 9999987      3333322


Q ss_pred             c-------------cCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEE
Q 010008          333 N-------------AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVL  399 (520)
Q Consensus       333 ~-------------~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~  399 (520)
                      .             ........+|+.+.+.++..||+++.. ++.++.++.....+.+.+.+...|+++......+.+..
T Consensus       207 ~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~s~~v~~  285 (348)
T d1iuga_         207 PRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLP-RLEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAA  285 (348)
T ss_dssp             CCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEE
T ss_pred             ccccccchhhhhhhhccCcccccccchHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHhhhhhhhhhccChhhcCCeEEE
Confidence            1             111123468999999999999998764 34555544444455555566668998875432222334


Q ss_pred             EEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          400 VDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       400 vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +.+ +.+++..++.+.|++.||.+..+    . ++.....+|||+...    .+++|++.+.+.|+++++.
T Consensus       286 ~~~-P~g~~~~~~~~~l~~~gi~i~~G----~-~~l~~~~~RIg~mG~----~~~~d~~~~~~~l~~~l~~  346 (348)
T d1iuga_         286 FYL-PEGVPYARVKEAFAQRGAVIAGG----Q-GPLKGKVFRLSLMGA----YDRYEALGVAGMFREVLEE  346 (348)
T ss_dssp             EEC-CTTCCHHHHHHHHHTTTEECEEC----C-GGGTTTEEEECCCSS----CCHHHHHHHHHHHHHHHHH
T ss_pred             EEC-CCCCCHHHHHHHHHHCCeEEEcC----c-cccCCCEEEEeCCCC----CCHHHHHHHHHHHHHHHHH
Confidence            444 56889999999999999998433    2 233445799997544    3479999999999998864

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.90  E-value=2.7e-22  Score=205.13  Aligned_cols=335  Identities=13%  Similarity=0.069  Sum_probs=223.3

Q ss_pred             cceEecCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHH
Q 010008           95 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE  174 (520)
Q Consensus        95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~  174 (520)
                      .+-++++...+++.|++||.....+.           .+.++.+.++ .+++.+++++|++..+  +.+...|||.++.+
T Consensus        18 ~~l~~PGP~~~~~~V~~Am~~~~~~h-----------r~~ef~~i~~-~~r~~L~~ll~~~~~~--~i~~~gsgT~a~ea   83 (388)
T d2ch1a1          18 KIMMGPGPSNCSKRVLTAMTNTVLSN-----------FHAELFRTMD-EVKDGLRYIFQTENRA--TMCVSGSAHAGMEA   83 (388)
T ss_dssp             CBCCSSSSCCCCHHHHHHTTSCCCCT-----------TCHHHHHHHH-HHHHHHHHHHTCCCSC--EEEESSCHHHHHHH
T ss_pred             ceeeeCCCCCCCHHHHHHhCcCCCCC-----------CCHHHHHHHH-HHHHHHHHHhCCCCCe--EEEEcCcHHHHHHH
Confidence            36688888889999999986433221           1456666555 6889999999997542  23445577899999


Q ss_pred             HHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC
Q 010008          175 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP  254 (520)
Q Consensus       175 ~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p  254 (520)
                      ++.+++.+||+|++....+.++   .+..   .....+.....+.  .. +....|.+.+++.....+++++.+.+.++.
T Consensus        84 ~~~~l~~~~~~vl~~~~g~~~~---~~~~---~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~  154 (388)
T d2ch1a1          84 MLSNLLEEGDRVLIAVNGIWAE---RAVE---MSERYGADVRTIE--GP-PDRPFSLETLARAIELHQPKCLFLTHGDSS  154 (388)
T ss_dssp             HHHHHCCTTCEEEEEESSHHHH---HHHH---HHHHTTCEEEEEE--CC-TTSCCCHHHHHHHHHHHCCSEEEEESEETT
T ss_pred             HHHHhccccccccccccccccc---cchh---hhhhhcccccccc--cc-cccccchhhhhhhhccCCcceeeeeecccc
Confidence            9999999999999887543322   1111   1122243223333  32 345678888888877778999988754443


Q ss_pred             --CCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhh
Q 010008          255 --RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI  331 (520)
Q Consensus       255 --~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i  331 (520)
                        ...|++++.++|+++|+++++|++++.|....++...   ++|++++|.||++.||.| |+++.++.      ..+..
T Consensus       155 tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~---~~d~~~~s~~K~~~gp~G~g~~~~~~~------~~~~~  225 (388)
T d2ch1a1         155 SGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKW---EIDAVYTGAQKVLGAPPGITPISISPK------ALDVI  225 (388)
T ss_dssp             TTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTT---TCCEEECCCC-CCCCCSSCEEEEECHH------HHHHH
T ss_pred             cccccchhhhcchhccccceeeeeeeecccccccchhcc---CceEEEEccccccCCCCeEEEEeccHH------HHHhh
Confidence              3889999999999999999999999988765443332   589999999999999998 77777652      21111


Q ss_pred             c----------------------ccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEe
Q 010008          332 N----------------------NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLV  389 (520)
Q Consensus       332 ~----------------------~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~  389 (520)
                      .                      ....+...+++....+.++..+++.+...+.....++.......+...+...++...
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (388)
T d2ch1a1         226 RNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIF  305 (388)
T ss_dssp             HTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBS
T ss_pred             hcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhcccccc
Confidence            0                      011223356778888888887877665445455555555555556666665555443


Q ss_pred             cCC---CCCeeEEEEecCCCCCHHHHHHHH-hhcCeEEcCCCCCCCCCCCCCCEEEEcc-CCccccCCCHHHHHHHHHHH
Q 010008          390 SGG---SDNHLVLVDLRPMGIDGARVEKIL-DMASITLNKNSVPGDKSALVPGGIRIGS-PAMTTRGFSEKEFVAIADFI  464 (520)
Q Consensus       390 ~~g---t~~~~~~vd~~~~g~~~~~~~~~L-~~~gI~v~~~~~Pg~~~~~~~~giRig~-~~~tt~g~~~~d~~~la~~i  464 (520)
                      ...   ..+.++.+.+ +.++++.++...| +++||.+..+.     +....+.+|||+ ..+++    ++|++++.++|
T Consensus       306 ~~~~~~rs~~v~~~~~-p~g~~~~~l~~~l~~~~gI~v~~G~-----~~~~~~~~RIs~~g~~~t----~edI~~ll~al  375 (388)
T d2ch1a1         306 VKDPRHRLPTVTGIMI-PKGVDWWKVSQYAMNNFSLEVQGGL-----GPTFGKAWRVGIMGECST----VQKIQFYLYGF  375 (388)
T ss_dssp             SCSGGGBCTTEEEEEC-CTTCCHHHHHHHHHHHHCBCCBCCC-----GGGTTTEEEEECCGGGCS----HHHHHHHHHHH
T ss_pred             cCCHHHhCCeEEEEEC-CCCCCHHHHHHHHhhcCCEEEeCCC-----ccccCCEEEEcCCcCCCC----HHHHHHHHHHH
Confidence            321   1123334444 3578888877666 66799985432     123345799995 44443    79999999999


Q ss_pred             HHHHHHH
Q 010008          465 HEGVEIT  471 (520)
Q Consensus       465 ~~~l~~~  471 (520)
                      +++|+..
T Consensus       376 ke~L~~~  382 (388)
T d2ch1a1         376 KESLKAT  382 (388)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9999863

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.90  E-value=1.4e-22  Score=207.72  Aligned_cols=328  Identities=18%  Similarity=0.179  Sum_probs=223.9

Q ss_pred             ecCCCCC----hHHHHHHHhhhhhccCCCCCCCCCCCCc-chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHH
Q 010008           99 IASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF  173 (520)
Q Consensus        99 iasen~~----~~~V~ea~~s~l~~~y~~G~p~~ryy~g-~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~  173 (520)
                      ..|.+|.    .|.++++....+. +|.-|..+.|...| .+...++|    +++++++|.+.     -+..+||..||.
T Consensus        50 FsSndYLGL~~~p~v~~a~~~al~-~yG~gs~~Sr~~~G~~~~h~~LE----~~lA~~~g~e~-----all~~sG~~An~  119 (396)
T d2bwna1          50 WCGNDYLGMGQHPVVLAAMHEALE-AVGAGSGGTRNISGTTAYHRRLE----AEIAGLHQKEA-----ALVFSSAYNAND  119 (396)
T ss_dssp             CSCSCTTSGGGCHHHHHHHHHHHH-HHCSCCCSBTTTBCCBHHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHH
T ss_pred             EEcccccCcCCCHHHHHHHHHHHH-HhCCCccccccccCCchHHHHHH----HHHHHHhCCCc-----eeeeecchHHHH
Confidence            3577775    6899999887775 56667777776555 45567777    68899999985     355689999999


Q ss_pred             HHHHhh--CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc---CCcEEEE
Q 010008          174 EVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLIIA  248 (520)
Q Consensus       174 ~~l~al--l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~---~pklIi~  248 (520)
                      .++.++  ..+||.|+.....|.+...        .+..++.  +.+.++.      -|+++++++++..   ++++|++
T Consensus       120 ~~i~~l~~~~~~d~i~~D~~~Hasi~~--------g~~ls~a--~~~~f~H------nd~~~l~~l~~~~~~~~~~~iv~  183 (396)
T d2bwna1         120 ATLSTLRVLFPGLIIYSDSLNHASMIE--------GIKRNAG--PKRIFRH------NDVAHLRELIAADDPAAPKLIAF  183 (396)
T ss_dssp             HHHHHHHHHSTTCEEEEETTCCHHHHH--------HHHHSCC--CEEEECT------TCHHHHHHHHHHSCTTSCEEEEE
T ss_pred             HHHHHHhcccCCCceeehhhhhhccch--------hhhcccc--CceEeec------chHHHhhhHHhhhcccCceeEEE
Confidence            999988  5788988877765533211        2233444  3344433      3667776665432   3456666


Q ss_pred             c--CCCCCCCCCHHHHHHHHHHhCCEEEEechhhccccccc---cc--CCCCCcccEEEeccCcccCCCCceEEEeeCCC
Q 010008          249 G--ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAAS---VV--ADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDP  321 (520)
Q Consensus       249 ~--~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~---~~--~~p~~~aDiv~~S~hK~l~GprgG~I~~~~~~  321 (520)
                      .  +|..+...|+++|.++|+++|++|++|+||+.|.+...   ..  .......|++++|+.|.| |-.||++++++  
T Consensus       184 egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~-g~~Gg~v~~~~--  260 (396)
T d2bwna1         184 ESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAY-GVFGGYIAASA--  260 (396)
T ss_dssp             ESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTT-CSCCEEEEECH--
T ss_pred             EeeccCcccccccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccc-cccccccchhH--
Confidence            5  45566689999999999999999999999999987432   11  011124799999999998 45689999988  


Q ss_pred             cchhhHHHhhcccCCCCC-CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEE
Q 010008          322 VLGVELESAINNAVFPGL-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV  400 (520)
Q Consensus       322 ~~~~~l~~~i~~~~~p~~-~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~v  400 (520)
                          ++.+.+.....+.. .+++....+++...+++.....+..+.+++...|.+.+.+.|.+.|+.+..  ++++++-+
T Consensus       261 ----~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~--~~spIvpv  334 (396)
T d2bwna1         261 ----RMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIID--HGSHIVPV  334 (396)
T ss_dssp             ----HHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCC--CSSSCEEE
T ss_pred             ----HHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhcCCCcCC--CCCCEEEE
Confidence                66666543322222 233344555555567777666566677788888999999999999998764  34566555


Q ss_pred             EecCCCCCHHHHH-HHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          401 DLRPMGIDGARVE-KILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       401 d~~~~g~~~~~~~-~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      -+... .....+. ++|+++||.|..-..|-  -|.+...+||+..+.    ++++|++++++.+++++
T Consensus       335 ~ig~~-~~~~~~a~~lL~e~Gi~v~~i~~Pt--Vp~g~~rlRi~lsa~----ht~edId~l~~~L~~iw  396 (396)
T d2bwna1         335 VIGDP-VHTKAVSDMLLSDYGVYVQPINFPT--VPRGTERLRFTPSPV----HDLKQIDGLVHAMDLLW  396 (396)
T ss_dssp             ECCCH-HHHHHHHHHHHHHHCEECCEECTTT--SCTTCCEEEECCCTT----SCHHHHHHHHHHHHHHC
T ss_pred             EeCCH-HHHHHHHHHHHHhCCEEEEEECCCc--CCCCCeeEEEEeCcc----CCHHHHHHHHHHHHHhC
Confidence            44321 1123344 45778999986543342  134567899987764    55999999999998763

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=3.9e-23  Score=214.43  Aligned_cols=341  Identities=16%  Similarity=0.095  Sum_probs=217.6

Q ss_pred             hccceEecCCC----CChHHHHHHHhhhhhccC--CCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecC
Q 010008           93 FKSLELIASEN----FTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPL  166 (520)
Q Consensus        93 ~~~i~Liasen----~~~~~V~ea~~s~l~~~y--~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~  166 (520)
                      .+.|+|..+..    +..+.+.+++...+....  ..+|+.   ..|.   .++.+...+++.+.+|.+.... -+|.+|
T Consensus        38 ~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~---~~LR~aia~~~~~~~g~~~~~~-~~I~it  110 (420)
T d1vp4a_          38 KDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYST---TEGD---PVLKQQILKLLERMYGITGLDE-DNLIFT  110 (420)
T ss_dssp             TTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCC---TTCC---HHHHHHHHHHHHHHHCCCSCCG-GGEEEE
T ss_pred             CCcEecCCcCCCCccCCHHHHHHHHHHHHhhCCccccCCCC---CcCC---HHHHHHHHHHHHHHhCCCCCCH-HHeEec
Confidence            46789987652    234556666666554321  123433   1232   3555566678888888752111 267789


Q ss_pred             ChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhh-----
Q 010008          167 SGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-----  240 (520)
Q Consensus       167 sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~-----  240 (520)
                      +|+ +|+..++.++++|||+|++++|.|..+..        .+...|.  +++.++.++  ..+|++.++..+.+     
T Consensus       111 ~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~--------~~~~~g~--~~~~~~~~~--~~~~~~~l~~~~~~~~~~~  178 (420)
T d1vp4a_         111 VGSQQALDLIGKLFLDDESYCVLDDPAYLGAIN--------AFRQYLA--NFVVVPLED--DGMDLNVLERKLSEFDKNG  178 (420)
T ss_dssp             EHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHTTTC--EEEEEEEET--TEECHHHHHHHHHHHHHTT
T ss_pred             cchhhhHHHHHHhhhccccccccccccccchhH--------HHHHHhh--hcccccccc--cccccchhhhhhhhhHHHh
Confidence            998 99999999999999999999997754421        2334555  555666653  35788777654332     


Q ss_pred             --cCCc-EEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-----cccEEEeccCccc
Q 010008          241 --FRPK-LIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCDVVTTTTHKSL  307 (520)
Q Consensus       241 --~~pk-lIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-----~aDiv~~S~hK~l  307 (520)
                        .+++ +++++.++||+  ..   ++++|.++|+++++++|+|++ |..+.+.+....+..     ..-++++|++|++
T Consensus       179 ~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~-y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~  257 (420)
T d1vp4a_         179 KIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDP-YGALRYEGETVDPIFKIGGPERVVLLNTFSKVL  257 (420)
T ss_dssp             CGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECS-STTCBCSSCCCCCHHHHHCTTTEEEEEESTTTT
T ss_pred             hccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccch-hhhccccCcccccccccccccceeEEecccccc
Confidence              1233 45567888987  33   578899999999999999998 556665543332221     2236778888875


Q ss_pred             -CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHHHHH--
Q 010008          308 -RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ-SPEFKVYQNKVVSNCRALASRLVE--  383 (520)
Q Consensus       308 -~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~-~~~~~~~~~~i~~na~~l~~~L~~--  383 (520)
                       +|+|.||+++++      ++.+++.+.......+++...+.++ +..+.... ....++..+.+.++++.+.+.|.+  
T Consensus       258 ~~G~RiG~~~~~~------~~i~~l~~~~~~~~~~~~~~~q~~~-a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  330 (420)
T d1vp4a_         258 APGLRIGMVAGSK------EFIRKIVQAKQSADLCSPAITHRLA-ARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYF  330 (420)
T ss_dssp             CGGGCEEEEECCH------HHHHHHHHHHHHHHSSCCHHHHHHH-HHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ccccccccccccc------hhhhhhhhhhhhccccCchhhhhhh-hhhcccccccccchhHHHHhhhhcccchhhhhhhh
Confidence             889999999987      6766665433222233444433332 22333211 112245556667777777777765  


Q ss_pred             ---CCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-C--CCCCCEEEEccCCccccCCCHHHH
Q 010008          384 ---LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-S--ALVPGGIRIGSPAMTTRGFSEKEF  457 (520)
Q Consensus       384 ---~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~--~~~~~giRig~~~~tt~g~~~~d~  457 (520)
                         .|+++..+ ..+.++|+++. .+.+..++.+.|+++||.+    .||.. +  ....+++||+...     .+++++
T Consensus       331 ~~~~g~~~~~p-~gg~f~~~~~~-~~~d~~~~~~~l~~~gV~v----~PG~~F~~~~~~~~~iRls~~~-----~~~e~l  399 (420)
T d1vp4a_         331 SDIPGVKWVKS-EGGLFIWLTLP-EGFDTWEMFEYAKRKKVFY----VPGRVFKVYDEPSPSMRLSFCL-----PPDEKI  399 (420)
T ss_dssp             TTSTTCEECCC-SBSSEEEEECC-TTCCTTTTHHHHHHHTEEC----EEGGGGCTTCCCCSEEEEECSS-----SCHHHH
T ss_pred             ccCCCcEEecC-CceEEEEEECC-CCCCHHHHHHHHHHCCeEE----EechhhCCCCCCCCEEEEEeCc-----CCHHHH
Confidence               27877654 34567788885 4667777888899999998    45432 1  1235789998642     346889


Q ss_pred             HHHHHHHHHHHHHH
Q 010008          458 VAIADFIHEGVEIT  471 (520)
Q Consensus       458 ~~la~~i~~~l~~~  471 (520)
                      ++..+.|.++++..
T Consensus       400 ~~a~~rL~~~l~~~  413 (420)
T d1vp4a_         400 VEGIKRLREVVLEY  413 (420)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            88888888888754

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=8.4e-23  Score=209.54  Aligned_cols=335  Identities=19%  Similarity=0.172  Sum_probs=215.5

Q ss_pred             ccceEecCCC--CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen--~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      +.|+|..+++  ++|+.+++++.....  ...+||..   .|   ..++.+...+++.+.+|++.+.  -+|.+|+|+ +
T Consensus        29 ~vi~l~~G~p~~~~p~~~~~al~~~~~--~~~~Y~~~---~G---~~~LR~aia~~~~~~~g~~~~~--~~I~it~G~~~   98 (389)
T d2gb3a1          29 RIHHLNIGQPDLKTPEVFFERIYENKP--EVVYYSHS---AG---IWELREAFASYYKRRQRVDVKP--ENVLVTNGGSE   98 (389)
T ss_dssp             EEEECSSCCCCSCCCTHHHHHHHHTCC--SSCCCCCT---TC---CHHHHHHHHHHHHHTSCCCCCG--GGEEEESHHHH
T ss_pred             CEEECCCCCCCCCCCHHHHHHHHhcCC--CCCCCCCC---cC---CHHHHHHHHHHHHHhcCCCccc--ceEEecccccc
Confidence            5689988875  368889999876432  23345431   12   3456556667888888876321  267778998 8


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA  250 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~  250 (520)
                      ++..++.++++|||.|++++|.+.....        .....|.  ..+.++.+.+.+..+.+.+...+.+ ++++++++.
T Consensus        99 ~l~~~~~~l~~~gd~V~i~~P~y~~~~~--------~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~n  167 (389)
T d2gb3a1          99 AILFSFAVIANPGDEILVLEPFYANYNA--------FAKIAGV--KLIPVTRRMEEGFAIPQNLESFINE-RTKGIVLSN  167 (389)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHHTC--EEEEEECCGGGTSCCCTTGGGGCCT-TEEEEEEES
T ss_pred             cccccccccccCCCeEEEeCCCCccccc--------cccccCc--cccccccccccccchhhhhhhhccc-CccEEEeCC
Confidence            9999999999999999999997754321        2233444  4555555544455666666666666 889999999


Q ss_pred             CCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC---cccEEEeccCccc--CCCCceEEEeeCC
Q 010008          251 SAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK---YCDVVTTTTHKSL--RGPRGGMIFFKKD  320 (520)
Q Consensus       251 s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~---~aDiv~~S~hK~l--~GprgG~I~~~~~  320 (520)
                      |+||+  ..   ++++|.++|+++|+++|.|+++ ..+...+..++...   ...+++.|++|.+  +|+|.||++++++
T Consensus       168 P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y-~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~  246 (389)
T d2gb3a1         168 PCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVY-SEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNE  246 (389)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT-TTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCH
T ss_pred             CCccccccchHHHHHHHHhhcccCCEEEEEeccc-cccccccccccccccccccccccccccccccCcccceeeeeccch
Confidence            99997  33   4788899999999999999984 55565543332222   2347778998875  7899999999873


Q ss_pred             CcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEE
Q 010008          321 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV  400 (520)
Q Consensus       321 ~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~v  400 (520)
                           .+.+......... .+.......++ ...+.. .+..++...+.+.++++.+.+.|++.|+..........++|+
T Consensus       247 -----~i~~~~~~~~~~~-~~~~~~~~~~~-~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g~~~~~  318 (389)
T d2gb3a1         247 -----ELISHAMKLAQGR-LAPPLLEQIGS-VGLLNL-DDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITA  318 (389)
T ss_dssp             -----HHHHHHHHHHHHS-CCCCHHHHHHH-HHHHTC-CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEE
T ss_pred             -----hHHHHHhhhhhcc-ccccccccccc-cccccc-cchhcccccccccccchhhhhhhhhhccccccCCCceEEEEE
Confidence                 3433332221111 12222223322 222321 112346677888889999999999987654443344567788


Q ss_pred             EecCCCCCHHHHH-HHHhh-----cCeEEcCCCCCCCC----CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          401 DLRPMGIDGARVE-KILDM-----ASITLNKNSVPGDK----SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       401 d~~~~g~~~~~~~-~~L~~-----~gI~v~~~~~Pg~~----~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      ++..  .++.++. ++|++     .||.+    .||..    +....+++||++.      .+++++++..+.|.++++.
T Consensus       319 ~lp~--~~~~~~~~~ll~e~~l~~~~v~v----~pg~~f~~~~~~~~~~iRis~~------~~~~~l~~a~~~L~~~lk~  386 (389)
T d2gb3a1         319 ELPV--EDAEEFARWMLTDFNMDGETTMV----APLRGFYLTPGLGKKEIRIACV------LEKDLLSRAIDVLMEGLKM  386 (389)
T ss_dssp             ECSS--SCHHHHHHHHHHSCCBTTEEEEC----EEGGGGCSSTTTTSSEEEEECC------SCHHHHHHHHHHHHHHHHH
T ss_pred             eCCC--CCHHHHHHHHHHhhhhhhCCEEE----EeCcccccCCCCCCCEEEEEEc------CCHHHHHHHHHHHHHHHHH
Confidence            8753  2555544 45554     35555    34432    1223578999853      3478888888888777764

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=2.9e-22  Score=203.07  Aligned_cols=310  Identities=16%  Similarity=0.125  Sum_probs=199.2

Q ss_pred             ccceEecCCCCC--hHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen~~--~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      ..|.|.++||+.  ++.+.++    .-++    ||...+       .++    ++.+++.+|++++    +|.+++|+ +
T Consensus        28 ~~i~L~~ne~p~~~~~~~~~~----~l~r----YPd~~~-------~~L----r~~ia~~~gv~pe----~I~it~Gs~e   84 (354)
T d1fg7a_          28 GDVWLNANEYPTAVEFQLTQQ----TLNR----YPECQP-------KAV----IENYAQYAGVKPE----QVLVSRGADE   84 (354)
T ss_dssp             CSEECSSCCCSSCCCCCCCCC----CTTS----CCCSSC-------HHH----HHHHHHHHTSCGG----GEEEESHHHH
T ss_pred             CCEEeeCCCCCCCCCHHHHHH----HHhc----CCCCcH-------HHH----HHHHHHHhCCChH----HeeeccCchH
Confidence            457888899874  3333221    1133    454221       233    3678889999987    67779999 9


Q ss_pred             HHHHHHHhhCCCCC-EEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 010008          171 ANFEVYTAILKPHD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG  249 (520)
Q Consensus       171 A~~~~l~all~pGD-~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~  249 (520)
                      |+..++.++++||| .|++++|.|..+.        ......|.  +++.++.+ +++.+|++++++.+.  ++|+|+++
T Consensus        85 ai~~~~~~~~~pgd~~Vl~~~P~y~~~~--------~~~~~~g~--~v~~~~~~-~~~~~d~~~l~~~~~--~~~~v~~~  151 (354)
T d1fg7a_          85 GIELLIRAFCEPGKDAILYCPPTYGMYS--------VSAETIGV--ECRTVPTL-DNWQLDLQGISDKLD--GVKVVYVC  151 (354)
T ss_dssp             HHHHHHHHHCCTTTCEEEECSSSCTHHH--------HHHHHHTC--EEEECCCC-TTSCCCHHHHHTSCT--TEEEEEEE
T ss_pred             HHHHHHHHhhccccccccccccccccch--------hhhhccCc--eeeccccc-cccccchhhhhhccc--ccceeecc
Confidence            99999999999999 5788888765432        12344555  66666665 568999999988763  78999999


Q ss_pred             CCCCCC--CCCHHHHHHHHH--HhCCEEEEechhhcccccccccCCCCC-c-ccEEEeccCccc--CCCCceEEEeeCCC
Q 010008          250 ASAYPR--DFDYPRMRQIAD--AVGALLMMDMAHISGLVAASVVADPFK-Y-CDVVTTTTHKSL--RGPRGGMIFFKKDP  321 (520)
Q Consensus       250 ~s~~p~--~~d~~~i~~ia~--~~g~~li~D~Ah~~gli~~~~~~~p~~-~-aDiv~~S~hK~l--~GprgG~I~~~~~~  321 (520)
                      .|+||+  ..+-+++..++.  +.+.++++|.+++ .+......+.... + ..+++.|++|++  +|+|.||+++++  
T Consensus       152 ~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~~-~f~~~~~~~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~--  228 (354)
T d1fg7a_         152 SPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYI-EFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANE--  228 (354)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTG-GGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECH--
T ss_pred             CCCccceeEeeecccccccccccccccccccccch-hhccccccchhhcccccceEEeCCccccCCCccccccccccc--
Confidence            999987  555444433322  3578888888754 3333222111111 2 237789999985  889999999988  


Q ss_pred             cchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCC-EEecCCCCCeeEEE
Q 010008          322 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGY-KLVSGGSDNHLVLV  400 (520)
Q Consensus       322 ~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~-~v~~~gt~~~~~~v  400 (520)
                          ++.+.+.+...+...++  ..+.++ +.++.......+....+++.++++.+.+.|.+.+. ..+.+ +.++++|+
T Consensus       229 ----~~i~~l~~~~~~~~~~~--~~~~~a-~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p-~~~~f~~~  300 (354)
T d1fg7a_         229 ----EVINLLMKVIAPYPLST--PVADIA-AQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFD-SETNYILA  300 (354)
T ss_dssp             ----HHHHHHHHHSCSSCSCH--HHHHHH-HHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECC-CSSSEEEE
T ss_pred             ----hhhhhhhhhcCccchhh--HHHHHH-HHHHhhhccccccccchhhhhHHHHHHHHHHhCCCcceeCC-CCceEEEE
Confidence                67777765544332222  112111 11221111122345567778888899999988654 33333 23567788


Q ss_pred             EecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHH
Q 010008          401 DLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIH  465 (520)
Q Consensus       401 d~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~  465 (520)
                      ++.    ++.++.+.|.++||.|..    ++..+..++++||++.       +++|++++.++|+
T Consensus       301 ~~~----~~~~~~~~L~~~gIlvr~----~~~~~~~~~~lRisig-------t~ee~~~~l~aLk  350 (354)
T d1fg7a_         301 RFK----ASSAVFKSLWDQGIILRD----QNKQPSLSGCLRITVG-------TREESQRVIDALR  350 (354)
T ss_dssp             EET----THHHHHHHHHHTTEECEE----CTTSTTCTTEEEEECC-------CHHHHHHHHHHHH
T ss_pred             eCC----CHHHHHHHHHHCCcEEec----CCCCCCCCCEEEEEeC-------CHHHHHHHHHHHh
Confidence            874    567788889999999853    3322224679999852       3688888887764

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.89  E-value=2.8e-22  Score=203.14  Aligned_cols=317  Identities=14%  Similarity=0.095  Sum_probs=199.3

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-H
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P  170 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~  170 (520)
                      +.|+|..++|+  +|+.+++++...+.+  ...||..    +.   .+++    +.+++.+|++++    +|.+++|+ +
T Consensus        23 ~~idls~~~np~~~p~~~~~a~~~~~~~--~~~Yp~~----~~---~~Lr----~aia~~~~v~~~----~I~~~~g~~~   85 (355)
T d1lc5a_          23 QLLDFSANINPLGMPVSVKRALIDNLDC--IERYPDA----DY---FHLH----QALARHHQVPAS----WILAGNGETE   85 (355)
T ss_dssp             GSEECSSCCCTTCCCHHHHHHHHHTGGG--GGSCCCT----TC---HHHH----HHHHHHHTSCGG----GEEEESSHHH
T ss_pred             heEEccCCCCCCCCCHHHHHHHHHHHHH--hccCCCC----Ch---HHHH----HHHHHHhCCCHH----HEEecccHHH
Confidence            45888888875  689999999876643  2245531    11   2343    567788999885    56678898 6


Q ss_pred             HHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCC-CCCCHHHHHHHhhhcCCcEEEEc
Q 010008          171 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILFRPKLIIAG  249 (520)
Q Consensus       171 A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~-~~iD~d~le~~i~~~~pklIi~~  249 (520)
                      ++..++.++.+  +.+++..|.+..+.        ......+.  .++.++++.++ +.+| +++++.+.+ ++|+|+++
T Consensus        86 ~~~~~~~~~~~--~~~~v~~p~~~~~~--------~~~~~~~~--~~~~v~~~~~~~~~~~-~~~~~~~~~-~~~~v~l~  151 (355)
T d1lc5a_          86 SIFTVASGLKP--RRAMIVTPGFAEYG--------RALAQSGC--EIRRWSLREADGWQLT-DAILEALTP-DLDCLFLC  151 (355)
T ss_dssp             HHHHHHHHHCC--SEEEEEESCCTHHH--------HHHHHTTC--EEEEEECCGGGTTCCC-TTHHHHCCT-TCCEEEEE
T ss_pred             HHHHHHhhhcc--ccccccCCccceec--------cccccccc--cceeeeeeccCCccce-eeeeecccc-ccceeeee
Confidence            66666555543  33444445443221        12223444  34444454334 4444 566777777 89999999


Q ss_pred             CCCCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccccCCCCC---cccEEEeccCccc--CCCCceEEEeeC
Q 010008          250 ASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK---YCDVVTTTTHKSL--RGPRGGMIFFKK  319 (520)
Q Consensus       250 ~s~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~---~aDiv~~S~hK~l--~GprgG~I~~~~  319 (520)
                      .|+||+  ..+   +++|.++|+++++++++|++++ .+...+....++.   ...+++.|++|++  +|+|.||+++++
T Consensus       152 nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~-~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~  230 (355)
T d1lc5a_         152 TPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFI-DFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSD  230 (355)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTG-GGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCC
T ss_pred             cccCcccccchhhhhhhhhhhcccccccccccccee-eeeeecccccccccccccceeecccccccccccccccceeccc
Confidence            999997  444   6677788899999999999964 3333322111111   2338889999975  799999999987


Q ss_pred             CCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecCCCCCeeE
Q 010008          320 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSGGSDNHLV  398 (520)
Q Consensus       320 ~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~gt~~~~~  398 (520)
                      +     .+.+.++....+.  ........++. .+++.  ...+.+..+++.++++++.+.|.+. |+.+..+  ..+++
T Consensus       231 ~-----~~~~~~~~~~~~~--~~~~~~~~~a~-~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~--~~~f~  298 (355)
T d1lc5a_         231 D-----AAMARMRRQQMPW--SVNALAALAGE-VALQD--SAWQQATWHWLREEGARFYQALCQLPLLTVYPG--RANYL  298 (355)
T ss_dssp             H-----HHHHHHHHHSCTT--CSCHHHHHHHH-HGGGC--HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCC--SSSEE
T ss_pred             h-----hhhHHHHhhcCCc--ccccccccccc-ccccc--cchhHHHHHHHHHHHHHHHHHHhhcCCcEECCC--CCEEE
Confidence            3     3444444433222  11122222222 22321  1234666778888889999999885 6666543  34667


Q ss_pred             EEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCC-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          399 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDK-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       399 ~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      |+++..   +..++.+.|.+.||.|..    |.. +...+++|||++.       +++|++++.+++++++
T Consensus       299 ~~~~~~---~~~~~~~~L~~~gv~vr~----~~~f~~~~~~~iRis~~-------~~~e~~~li~aL~~il  355 (355)
T d1lc5a_         299 LLRCER---EDIDLQRRLLTQRILIRS----CANYPGLDSRYYRVAIR-------SAAQNERLLAALRNVL  355 (355)
T ss_dssp             EEEESC---TTCCHHHHHHTTTEECEE----CTTSTTCCTTEEEEECC-------CHHHHHHHHHHHHHHC
T ss_pred             EEECCC---CHHHHHHHHHHCCcEEEe----CccCCCCCCCEEEEEeC-------CHHHHHHHHHHHHHhC
Confidence            888753   445677788889999854    322 2234679999853       3799999999988763

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=5.2e-22  Score=204.72  Aligned_cols=328  Identities=19%  Similarity=0.228  Sum_probs=219.5

Q ss_pred             cCCCCC----hHHHHHHHhhhhhccCCCCCCCCCCCCc-chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHH
Q 010008          100 ASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE  174 (520)
Q Consensus       100 asen~~----~~~V~ea~~s~l~~~y~~G~p~~ryy~g-~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~  174 (520)
                      +|.+|.    .|.|+++....+ ++|..|..+.|...| .+...++|    +.+++++|.+.     -+..+||+.||..
T Consensus        51 ~s~dYLGl~~hp~v~~a~~~a~-~~~g~~~~~sr~~~g~~~~~~~lE----~~lA~~~g~e~-----al~~~SG~~An~~  120 (401)
T d1fc4a_          51 CANNYLGLANHPDLIAAAKAGM-DSHGFGMASVRFICGTQDSHKELE----QKLAAFLGMED-----AILYSSCFDANGG  120 (401)
T ss_dssp             CCSCTTSCTTCHHHHHHHHHHH-HHHCSCCCSCHHHHCCBHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHT
T ss_pred             EccccccccCCHHHHHHHHHHH-HHhCCCcccceeeccCcHHHHHHH----HHHHHhhcCCc-----eEEecchhhhhHH
Confidence            466653    699999988776 456556656554443 34445566    67889999986     3556899999999


Q ss_pred             HHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc-----CCcEEEEc
Q 010008          175 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAG  249 (520)
Q Consensus       175 ~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~-----~pklIi~~  249 (520)
                      ++.++.+++|.|+.....|.+++. |       +...+.  +...++      ..|++++++++...     +..+|++.
T Consensus       121 ~i~~l~~~~d~i~~d~~~h~s~~~-G-------~~~~~a--~~~~~~------~~d~~~le~~~~~~~~~~~~~~liv~e  184 (401)
T d1fc4a_         121 LFETLLGAEDAIISDALNHASIID-G-------VRLCKA--KRYRYA------NNDMQELEARLKEAREAGARHVLIATD  184 (401)
T ss_dssp             THHHHCCTTCEEEEETTCCHHHHH-H-------HHTSCS--EEEEEC------TTCHHHHHHHHHHHHHTTCSSEEEEEE
T ss_pred             HHHHhcCCCcEEEeCCcchHHHHc-c-------ccccCc--eEEEEc------CCChHHHHHHHHHhhhcccCceEEEEc
Confidence            999999999999988876655431 1       222333  333332      24666666655432     22455554


Q ss_pred             --CCCCCCCCCHHHHHHHHHHhCCEEEEechhhccccccc---cc--CCCCCcccEEEeccCcccCCCCceEEEeeCCCc
Q 010008          250 --ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAAS---VV--ADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPV  322 (520)
Q Consensus       250 --~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~---~~--~~p~~~aDiv~~S~hK~l~GprgG~I~~~~~~~  322 (520)
                        ++..+...|++++++||+++|++|++|++|..|.+...   ..  ....+..|++++|++|.+.|+.||++.+++   
T Consensus       185 gv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~Gg~v~g~~---  261 (401)
T d1fc4a_         185 GVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARK---  261 (401)
T ss_dssp             SEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEECH---
T ss_pred             CCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCCcccccCCH---
Confidence              34444588999999999999999999999998876431   11  111235799999999999999999999988   


Q ss_pred             chhhHHHhhcccCCCCC-CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEE
Q 010008          323 LGVELESAINNAVFPGL-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVD  401 (520)
Q Consensus       323 ~~~~l~~~i~~~~~p~~-~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd  401 (520)
                         ++.+.+.....+.. ..+......++...+++....  .++..++..++.+++.+.+.+.|+.+..  ++++++.+.
T Consensus       262 ---~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~--~~~~~~~l~~~~~~~~~~l~~~g~~~~~--~~~pIv~v~  334 (401)
T d1fc4a_         262 ---EVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEA--GSELRDRLWANARQFREQMSAAGFTLAG--ADHAIIPVM  334 (401)
T ss_dssp             ---HHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTTCCBCC--SSSSEEEEE
T ss_pred             ---HHHHHHHcCChhhhhcCCCCHHHHHHHHhhhccccc--CHHHHHHHHHHHHHHHhhhcccCCccCC--CCCCEEEEE
Confidence               66665543221111 122233333443445655432  3677889999999999999999887654  345555444


Q ss_pred             ecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          402 LRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       402 ~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +... .....+.+.|.+.||.++.-..|.-  |.+.+.||+.+++.    +|++|++++++.|+++.+.
T Consensus       335 ~~~~-~~a~~~~~~L~~~Gi~v~~i~~PtV--p~g~~~lRi~~~a~----hT~edId~~v~al~ev~~~  396 (401)
T d1fc4a_         335 LGDA-VVAQKFARELQKEGIYVTGFFYPVV--PKGQARIRTQMSAA----HTPEQITRAVEAFTRIGKQ  396 (401)
T ss_dssp             EECH-HHHHHHHHHHHHTTEECCEECTTSS--CTTCEEEEEECCTT----CCHHHHHHHHHHHHHHHHH
T ss_pred             ECCH-HHHHHHHHHHHHCCceEEeECCCCC--CCCCceEEEEECCC----CCHHHHHHHHHHHHHHHHH
Confidence            4321 1234577888999999865333321  33466799987654    5699999999999998764

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.89  E-value=1.4e-22  Score=212.74  Aligned_cols=310  Identities=15%  Similarity=0.092  Sum_probs=203.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccc
Q 010008          131 YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS  209 (520)
Q Consensus       131 y~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~  209 (520)
                      +.....+.+.|    ++++++||++..     +.+++|| .+|.+++.++++|||+|++...+|.+.+..+..       
T Consensus        62 ~~~~~~i~eae----~~~A~~~ga~~a-----~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~-------  125 (462)
T d1c4ka2          62 LIHEGPAVAAE----KHAARVYNADKT-----YFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALA-------  125 (462)
T ss_dssp             TTTBTHHHHHH----HHHHHHTTCSEE-----EEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTT-------
T ss_pred             cCCCHHHHHHH----HHHHHHhCCCeE-----EEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHHH-------
Confidence            33344555555    788999999862     4457887 678888999999999999999988765533321       


Q ss_pred             cccceEEEEEcccCCCC-------CCCCHHHHHHHh---------hhcCC-cEEEEcCCCCCC-CCCHHHHHHHHHHhCC
Q 010008          210 GTSIYFESMPYRLDEST-------GLVDYDMLEKTA---------ILFRP-KLIIAGASAYPR-DFDYPRMRQIADAVGA  271 (520)
Q Consensus       210 ~~g~~~~~v~~~~d~~~-------~~iD~d~le~~i---------~~~~p-klIi~~~s~~p~-~~d~~~i~~ia~~~g~  271 (520)
                      +.+....+.+.++|+..       ..+|.+.+++.+         .. +| +++++..++|.+ ..|+++|+++|+++|+
T Consensus       126 l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~  204 (462)
T d1c4ka2         126 MAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWK-RPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCD  204 (462)
T ss_dssp             TTCCEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCS-CCBSEEEEESBCTTSEEECHHHHHHHHGGGBS
T ss_pred             HhcCCceeeecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhcc-CCceeEEEEeeeeccchhhHHHHHHHHHHcCC
Confidence            12222233333444321       234555554433         23 34 455666666655 7899999999999999


Q ss_pred             EEEEechhhcccccccccCCCC----------CcccEEEeccCcccCCCCceEEEeeCCCcc----hhhHHHhhcccCCC
Q 010008          272 LLMMDMAHISGLVAASVVADPF----------KYCDVVTTTTHKSLRGPRGGMIFFKKDPVL----GVELESAINNAVFP  337 (520)
Q Consensus       272 ~li~D~Ah~~gli~~~~~~~p~----------~~aDiv~~S~hK~l~GprgG~I~~~~~~~~----~~~l~~~i~~~~~p  337 (520)
                      +|++|+||++|....+..+...          .++|++++|+||+++++.+|.++..++...    ...-...+++....
T Consensus       205 ~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~  284 (462)
T d1c4ka2         205 YIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNL  284 (462)
T ss_dssp             EEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHH
T ss_pred             EEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccccccchhhhHHHHHHhhhh
Confidence            9999999999887655433211          246999999999998888877766553100    00001122222222


Q ss_pred             CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCC-CEE------ec--------------------
Q 010008          338 GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELG-YKL------VS--------------------  390 (520)
Q Consensus       338 ~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G-~~v------~~--------------------  390 (520)
                      ...++|+...++++.+|...+.....+++.++..++++.+++++.+.+ +..      +.                    
T Consensus       285 ~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  364 (462)
T d1c4ka2         285 FMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWR  364 (462)
T ss_dssp             HSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGB
T ss_pred             cccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhc
Confidence            335778888999999888877655567788889999999999998742 111      00                    


Q ss_pred             --C--------C-CCCee------EEEEe----------cCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEc
Q 010008          391 --G--------G-SDNHL------VLVDL----------RPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIG  443 (520)
Q Consensus       391 --~--------g-t~~~~------~~vd~----------~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig  443 (520)
                        +        + .+..+      +.++.          ...|+++..+.+.|+++||.+...         ..+.||+.
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI~~e~~---------~~~~i~~~  435 (462)
T d1c4ka2         365 FEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKS---------DLNSILFL  435 (462)
T ss_dssp             CCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEE---------CSSEEEEE
T ss_pred             cCCcchhccccccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHcCCeeecc---------CCCeEEEE
Confidence              0        0 00010      12221          223567889999999999987532         24679997


Q ss_pred             cCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          444 SPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       444 ~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +.    .+.|++|++++.+.|.++.+.
T Consensus       436 ~s----~~~T~edid~li~aL~ei~r~  458 (462)
T d1c4ka2         436 MT----PAETPAKMNNLITQLLQLQRL  458 (462)
T ss_dssp             CC----TTCCHHHHHHHHHHHHHHHHH
T ss_pred             ec----CCCCHHHHHHHHHHHHHHHHH
Confidence            64    456799999999999887654

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.89  E-value=1.7e-22  Score=208.39  Aligned_cols=346  Identities=17%  Similarity=0.203  Sum_probs=213.2

Q ss_pred             HHHHHHHHHHHh-hccceEecC----CC---CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHc
Q 010008           81 VCEIITKEKERQ-FKSLELIAS----EN---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF  152 (520)
Q Consensus        81 ~~~~~~~e~~~~-~~~i~Lias----en---~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lf  152 (520)
                      ++.++++-++.. .+.|+|..+    ++   ++.+.|++|+...+.+..+.+|+.   ..|   ..++.+.+.+++.+.+
T Consensus        15 i~~~~~~~~~d~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~---~~G---~~~lr~aia~~~~~~~   88 (401)
T d7aata_          15 ILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLP---IAG---LADFTRASAELALGEN   88 (401)
T ss_dssp             HHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCC---TTC---CHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhCCCCCCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCC---CCC---CHHHHHHHHHHHhccC
Confidence            566664433322 256999876    33   456899999887776655555644   223   3456656666666655


Q ss_pred             CCC--CCCCceeeec--CChH-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCC-CC
Q 010008          153 NLD--ENKWGVNVQP--LSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-ST  226 (520)
Q Consensus       153 g~~--~~~~~~~V~~--~sGs-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~-~~  226 (520)
                      +..  ++.+ +.++.  ++|+ .++..++.++++|||+|++++|.|.++..        .+...|.  +++.+++.. ++
T Consensus        89 ~~~~~~~~i-~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~--------~~~~~g~--~~~~~~~~~~~~  157 (401)
T d7aata_          89 SEAFKSGRY-VTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTP--------IFRDAGL--QLQAYRYYDPKT  157 (401)
T ss_dssp             CHHHHTTCE-EEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHH--------HHHHTTC--EEEEEECEETTT
T ss_pred             CcccCcCce-EEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhh--------HHHHcCC--eEEEEecccccc
Confidence            543  2222 11211  1222 46666778899999999999998876532        3445665  666666543 45


Q ss_pred             CCCCHHHHHHHhhh--cCCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCC-----C
Q 010008          227 GLVDYDMLEKTAIL--FRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-----K  294 (520)
Q Consensus       227 ~~iD~d~le~~i~~--~~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~-----~  294 (520)
                      +.+|.+.+.+.+..  .++++++++.|+||+  .+   .+++|.++|+++++++++|++ |.++.+.+....+.     .
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~-Y~~l~~~~~~~~~~~~~~~~  236 (401)
T d7aata_         158 CSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMA-YQGFASGDINRDAWALRHFI  236 (401)
T ss_dssp             TEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEES-CTTTTTSCHHHHTHHHHHHH
T ss_pred             ccccHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEecc-chhhhcCCcccchhhhhhhh
Confidence            78899998877643  267899999999997  33   477899999999999999999 56666554322111     0


Q ss_pred             --cc-cEEEeccCccc--CCCCceEEEeeCCCcc-hhhHHHhhcccCCCCCCCCChHHHHHHHHHHHH-----HhcCchh
Q 010008          295 --YC-DVVTTTTHKSL--RGPRGGMIFFKKDPVL-GVELESAINNAVFPGLQGGPHNHTIGGLAVCLK-----HAQSPEF  363 (520)
Q Consensus       295 --~a-Div~~S~hK~l--~GprgG~I~~~~~~~~-~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~-----~~~~~~~  363 (520)
                        .. -+++.|++|.+  +|+|.|+++++.+... ...+...+.........+.+...+.+ .+..+.     ......+
T Consensus       237 ~~~~~~~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~-~~~~l~~~~~~~~~~~~~  315 (401)
T d7aata_         237 EQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARI-ASLILNTPELRKEWLVEV  315 (401)
T ss_dssp             HTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHH-HHHHHHCHHHHHHHHHHH
T ss_pred             hhhcccceeEeccccceeeccccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHH-HHHhcCCHHHHHHHHHHH
Confidence              11 26778888875  8999999999885210 00111111111111112233322221 111221     0011234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCE----EecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCE
Q 010008          364 KVYQNKVVSNCRALASRLVELGYK----LVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGG  439 (520)
Q Consensus       364 ~~~~~~i~~na~~l~~~L~~~G~~----v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~g  439 (520)
                      +.+.+++.++++.+.+.|.+.|..    .+.+ ....++|+     +++.+.++++++++||.+    .||         
T Consensus       316 ~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~-~~G~F~~~-----~ls~e~~~~L~~e~gV~~----~pg---------  376 (401)
T d7aata_         316 KGMADRIISMRTQLVSNLKKEGSSHNWQHITD-QIGMFCFT-----GLKPEQVERLTKEFSIYM----TKD---------  376 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHH-CCSSEEEC-----CCCHHHHHHHHHHHCEEC----CTT---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCcceECC-CCeEEEec-----CCCHHHHHHHHHhCCEEE----CCC---------
Confidence            667777888899999999986532    2222 12344453     346677888889999988    443         


Q ss_pred             EEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          440 IRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       440 iRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +||+...     ++++++++++++|+++++
T Consensus       377 ~Ris~a~-----~~~~~i~~la~ai~~v~k  401 (401)
T d7aata_         377 GRISVAG-----VASSNVGYLAHAIHQVTK  401 (401)
T ss_dssp             CEEEGGG-----CCTTTHHHHHHHHHHHHC
T ss_pred             cEEEecc-----CCHHHHHHHHHHHHHHhC
Confidence            5998754     446899999999998763

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.89  E-value=5.7e-23  Score=215.99  Aligned_cols=326  Identities=17%  Similarity=0.175  Sum_probs=209.9

Q ss_pred             CCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccc
Q 010008          125 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTP  204 (520)
Q Consensus       125 ~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~  204 (520)
                      ..|.++|++++.++++|    ++++++||.+.     .+.++||++||.+++.+++++||+++..+..+..+..|+..+.
T Consensus        65 ~~gd~~y~~~~~~~~le----~~~a~l~g~~~-----~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~  135 (465)
T d1ax4a_          65 ITGDEAYAGSRNYYDLK----DKAKELFNYDY-----IIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTA  135 (465)
T ss_dssp             HTCCCCSSSCHHHHHHH----HHHHHHHCCCE-----EEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHH
T ss_pred             hhhhhhhccChHHHHHH----HHHHHHHCCCE-----EEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhH
Confidence            35667899999999998    57788999985     3667999999999999998888766544443322222221100


Q ss_pred             ccccccccceEEEEEc---------ccCCCCCCCCHHHHHHHhhhcC---CcEEEEcCCCCCC---CC---CHHHHHHHH
Q 010008          205 KRRVSGTSIYFESMPY---------RLDESTGLVDYDMLEKTAILFR---PKLIIAGASAYPR---DF---DYPRMRQIA  266 (520)
Q Consensus       205 ~~~v~~~g~~~~~v~~---------~~d~~~~~iD~d~le~~i~~~~---pklIi~~~s~~p~---~~---d~~~i~~ia  266 (520)
                       ..+...|.  .++..         ..++.++.+|++++++++++..   +.++++..+++..   ..   ++++|+++|
T Consensus       136 -~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~  212 (465)
T d1ax4a_         136 -AHVELNGC--KAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIA  212 (465)
T ss_dssp             -HHHHHTTC--EEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHH
T ss_pred             -HHHHHcCC--eeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHH
Confidence             01222232  33322         2233467899999999998643   3455555444432   33   577889999


Q ss_pred             HHhCCEEEEechhhcccccccc------c--------CCCCCcccEEEeccCcccCCCCceEEEeeCCCcchhhHHHhhc
Q 010008          267 DAVGALLMMDMAHISGLVAASV------V--------ADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAIN  332 (520)
Q Consensus       267 ~~~g~~li~D~Ah~~gli~~~~------~--------~~p~~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i~  332 (520)
                      ++||++|++|++|..|....+.      .        +..+..+|++++|.||.+++|++|++++++..    .+.....
T Consensus       213 ~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~~g~l~~~~~~----~~~~~~~  288 (465)
T d1ax4a_         213 KQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNE----EIFTLAR  288 (465)
T ss_dssp             HHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSCEEEEESSCH----HHHHHHH
T ss_pred             HHcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCcccccceeEeecchH----HHHHhhh
Confidence            9999999999998766543211      0        01112478999999999999999999998741    1222111


Q ss_pred             ----ccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCC--C
Q 010008          333 ----NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPM--G  406 (520)
Q Consensus       333 ----~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~--g  406 (520)
                          ........++.....+++++..+.+...   +++.++..+++++|.+.|++.|++++.+ ...+.+.++....  .
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~---~~~~~~~~~~~~~l~~~L~~~g~~~v~~-~~~~~~~~~~~~~~~~  364 (465)
T d1ax4a_         289 QRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE---EEYLHYRIGQVKYLGDRLREAGIPIQYP-TGGHAVFVDCKKLVPQ  364 (465)
T ss_dssp             HHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHTTCCBCSS-CCSSEEEEESTTTCTT
T ss_pred             ccccccccCCCcchhhHHHHHHHhhhhHHhhh---HHHHHHHHHHHHHHHHHHHhhcCccccC-CCcceeeeehhhhcCC
Confidence                1112223444455555555555555433   4567777888999999999999988765 3456666665321  1


Q ss_pred             C-----C-HHHHHHHHhhcCeEEcCCCCC--------CCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHHH
Q 010008          407 I-----D-GARVEKILDMASITLNKNSVP--------GDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITL  472 (520)
Q Consensus       407 ~-----~-~~~~~~~L~~~gI~v~~~~~P--------g~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~~  472 (520)
                      .     . ...+.++|.+.||.+.....|        |...+...+.+|+++|..   .+|++||+++++.|.++++...
T Consensus       365 ~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~---~~T~eeiD~vv~~l~~v~~~~~  441 (465)
T d1ax4a_         365 IPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARR---VYTNDHMDYIADALIGLKEKFA  441 (465)
T ss_dssp             SCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTT---SSCHHHHHHHHHHHHTTHHHHT
T ss_pred             CccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCC---CCCHHHHHHHHHHHHHHHHHHH
Confidence            1     1 234667788899986532211        222233456899987743   3689999999999999887654


Q ss_pred             H
Q 010008          473 E  473 (520)
Q Consensus       473 ~  473 (520)
                      +
T Consensus       442 ~  442 (465)
T d1ax4a_         442 T  442 (465)
T ss_dssp             T
T ss_pred             h
Confidence            3

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=3.9e-21  Score=196.91  Aligned_cols=326  Identities=14%  Similarity=0.140  Sum_probs=221.1

Q ss_pred             cCCCCC----hHHHHHHHhhhhhccCCCCCCCCCCCCc-chhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHH
Q 010008          100 ASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE  174 (520)
Q Consensus       100 asen~~----~~~V~ea~~s~l~~~y~~G~p~~ryy~g-~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~  174 (520)
                      +|.+|.    .|.|+++....+. +|.-|..+.|...| .+...++|    +++++++|.+.     -+...||..||..
T Consensus        44 ~s~dYLGl~~~p~v~~a~~~a~~-~~G~~~~~sr~~~g~~~~~~~lE----~~LA~~~g~e~-----al~~~SG~~an~~  113 (383)
T d1bs0a_          44 SSNDYLGLSHHPQIIRAWQQGAE-QFGIGSGGSGHVSGYSVVHQALE----EELAEWLGYSR-----ALLFISGFAANQA  113 (383)
T ss_dssp             SCCCTTSGGGCHHHHHHHHHHHH-HHCSCCCSBTTTTCCCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHH
T ss_pred             EcccccccCCCHHHHHHHHHHHH-HhCCCCCccccccCcchHHHHHH----HHHHHhcCCCc-----eEEecccchhhHH
Confidence            456653    6889998887764 56667777775554 45567777    67889999885     3556899999999


Q ss_pred             HHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcC--CcEEEEc--C
Q 010008          175 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR--PKLIIAG--A  250 (520)
Q Consensus       175 ~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~--pklIi~~--~  250 (520)
                      ++.++..++|.|+.....|.+...        .+...+.  ..+.++      ..|++++++.+...+  .++|++.  +
T Consensus       114 ~i~al~~~~d~v~~d~~~h~si~~--------g~~~~~~--~~~~~~------hnd~~~le~~l~~~~~~~~~vv~e~v~  177 (383)
T d1bs0a_         114 VIAAMMAKEDRIAADRLSHASLLE--------AASLSPS--QLRRFA------HNDVTHLARLLASPCPGQQMVVTEGVF  177 (383)
T ss_dssp             HHHHHCCTTCEEEEETTCCHHHHH--------HHHTSSS--EEEEEC------TTCHHHHHHHHHSCCSSCEEEEEESBC
T ss_pred             HHHhhcCCCceEEeeccccHHHhh--------ccccCCC--cceEec------chHHHHHHHHhcccCCCceEEEecCCC
Confidence            999999999999988765543321        2223333  444443      358889988876543  3455555  3


Q ss_pred             CCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEeccCcccCCCCceEEEeeCCCcchhhH
Q 010008          251 SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVEL  327 (520)
Q Consensus       251 s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l  327 (520)
                      +..+...|+++|.++|+++|++|++|+||..|.....-..  .... ..|+++.|+.|.+ |..||++.++.      +.
T Consensus       178 s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~-g~~Gg~v~~~~------~~  250 (383)
T d1bs0a_         178 SMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGF-GVSGAAVLCSS------TV  250 (383)
T ss_dssp             TTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTT-SSCCEEEEECH------HH
T ss_pred             CCCCcccchhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCccccccccccccc-cccccccccch------hH
Confidence            4455689999999999999999999999998876432110  0001 3568888999987 45688998887      56


Q ss_pred             HHhhcccCCCCC-CCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCC
Q 010008          328 ESAINNAVFPGL-QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMG  406 (520)
Q Consensus       328 ~~~i~~~~~p~~-~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g  406 (520)
                      .+.+....-+.. ..+.+...+++...+++.....+.....++..++..++.+.|.+.|+.+...  +++++.+-+... 
T Consensus       251 ~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~~~--~s~Ii~v~~g~~-  327 (383)
T d1bs0a_         251 ADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADS--CSAIQPLIVGDN-  327 (383)
T ss_dssp             HHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECSC--CSSBCCEEEESH-
T ss_pred             HHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCccCCC--CCCEEEEEECCH-
Confidence            665543221111 2223334445555566666555567777888899999999999999987653  345443333211 


Q ss_pred             CCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          407 IDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       407 ~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      .....+.+.|.+.||.++.-..|-  -|.+.+.+||++++.    ++++|++++++.|+.+
T Consensus       328 ~~a~~~~~~L~~~Gi~v~~~~~Pt--Vp~g~~~lRi~~~a~----ht~edid~l~~~L~~~  382 (383)
T d1bs0a_         328 SRALQLAEKLRQQGCWVTAIRPPT--VPAGTARLRLTLTAA----HEMQDIDRLLEVLHGN  382 (383)
T ss_dssp             HHHHHHHHHHHHTTEECCEECTTS--SCTTCEEECCBCCTT----CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCceEEEEcCCC--CCCCCceEEEEeCCC----CCHHHHHHHHHHHHhc
Confidence            123467788999999986533332  133457899988765    5599999999988753

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.88  E-value=2.2e-22  Score=205.13  Aligned_cols=285  Identities=18%  Similarity=0.102  Sum_probs=166.6

Q ss_pred             HHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEc-C-CCCCccccccccccccccccccceEEEEEcccC
Q 010008          146 KRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGL-D-LPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD  223 (520)
Q Consensus       146 ~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~-~-~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d  223 (520)
                      +...+.|+.++.+.  .+.+.+|++|+++++.++. |||.|++. + +.|.+..        ..+...|.  +++.  .+
T Consensus        57 ~~~~~~~~~~~~e~--~~~~~~~~~a~~~~l~al~-~~~~vi~~~~~~~~~~~~--------~~~~l~g~--~~v~--~~  121 (366)
T d2aeua1          57 EYGLKHLGGDENDK--CVGFNRTSSAILATILALK-PKKVIHYLPELPGHPSIE--------RSCKIVNA--KYFE--SD  121 (366)
T ss_dssp             HHHHHHHTCCTTEE--EEEESSHHHHHHHHHHHHC-CSEEEEECSSSSCCTHHH--------HHHHHTTC--EEEE--ES
T ss_pred             HHHHHHccCCCccE--EEEeCCHHHHHHHHHHHhC-CCCEEEEecCCCcchhHH--------HHHHhcCC--eEEC--CC
Confidence            44566677765431  2333455699999999976 55655443 3 3333221        23445565  3322  22


Q ss_pred             CCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCC---CCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEE
Q 010008          224 ESTGLVDYDMLEKTAILFRPKLIIAGASAYPRD---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVV  299 (520)
Q Consensus       224 ~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~~---~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv  299 (520)
                            |++++++++++ ++|+|++++|+||..   .|+++|+++|+++|+++++|++|..+.......+.+.. ++|++
T Consensus       122 ------d~e~l~~~i~~-~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~  194 (366)
T d2aeua1         122 ------KVGEILNKIDK-DTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLV  194 (366)
T ss_dssp             ------CHHHHHTTCCT-TEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEE
T ss_pred             ------CHHHHHHhcCC-CceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCceEE
Confidence                  79999999998 899999998877653   46899999999999999999998766543333333333 78999


Q ss_pred             EeccCcccCCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH---
Q 010008          300 TTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA---  376 (520)
Q Consensus       300 ~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~---  376 (520)
                      ++|+||+++|||+||+++++      ++.+++...........+.. ...++..+|+.+.   . ...++..++++.   
T Consensus       195 ~~S~sK~~~g~~~G~i~~~~------~~i~~~~~~~~~~g~~~~~~-~~~a~~~aL~tl~---~-~r~~~~~~~~~~i~~  263 (366)
T d2aeua1         195 VTSTDKLMEGPRGGLLAGKK------ELVDKIYIEGTKFGLEAQPP-LLAGIYRALKNFN---L-ERIRKAFERAKNFDL  263 (366)
T ss_dssp             EEETTSSSSSCSCEEEEEEH------HHHHHHHHHHHTTTCBCCHH-HHHHHHHHHHHCC---H-HHHHHHHHHHHHCCC
T ss_pred             EecccccccccceeEEEecH------HHHHHHHHHHhcccccCCHH-HHHHHHHHHHhcc---H-HHHHHHHHHHHHHHH
Confidence            99999999999999999998      67776654322211222222 2333334565432   1 112233333333   


Q ss_pred             -HHHHHHH-----CCCEEe-cCCCCCeeEEEEecCCC---C--CHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEcc
Q 010008          377 -LASRLVE-----LGYKLV-SGGSDNHLVLVDLRPMG---I--DGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGS  444 (520)
Q Consensus       377 -l~~~L~~-----~G~~v~-~~gt~~~~~~vd~~~~g---~--~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~  444 (520)
                       +.+.+..     .++... ......++++.......   +  +.+.+.++|++.||.+    +||...|...+.+||+.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ll~~~gV~~----ip~~~~p~~~~~lRis~  339 (366)
T d2aeua1         264 SKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIIT----ITVAGMPGASKSLRIDL  339 (366)
T ss_dssp             HHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEEC----STTSSSCSSCCSEEEET
T ss_pred             HHHhhhhccccccccccCcccccCccchhccCCCcceeecccCHHHHHHHHHHhCCEEE----EECCCCCCCCCEEEEec
Confidence             2232222     122111 11122344444332210   0  1134566788999997    66644334567899997


Q ss_pred             CCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          445 PAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       445 ~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      ..-++..+.   .+++.+.|.+.++.
T Consensus       340 ~~~~~~~i~---~d~l~~ai~~~lK~  362 (366)
T d2aeua1         340 TSRDAERID---DNYIIKAIVESIKM  362 (366)
T ss_dssp             TSGGGGGSC---HHHHHHHHHHHHHH
T ss_pred             cccchhhCC---HHHHHHHHHHHHHH
Confidence            654443333   34445555555543

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.3e-20  Score=196.70  Aligned_cols=368  Identities=12%  Similarity=0.062  Sum_probs=238.5

Q ss_pred             cccChH-HHHHHHHHHHHhhc-cceEecC-CCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 010008           75 GEADPE-VCEIITKEKERQFK-SLELIAS-ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA  151 (520)
Q Consensus        75 ~~~d~~-~~~~~~~e~~~~~~-~i~Lias-en~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~l  151 (520)
                      ...+++ .+++|..|.....+ .++|..- ..++++.+.+.|...+...+..    ..   -.+...++|..+.++++++
T Consensus        33 ~~~~~~~~~~~i~d~l~~dg~~~~n~asf~~t~~~~~~~~l~~~~~~~N~~~----~~---~~P~~~~lE~~~v~~la~L  105 (450)
T d1pmma_          33 HEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWID----KE---EYPQSAAIDLRCVNMVADL  105 (450)
T ss_dssp             SCCCHHHHHHHHHHHGGGSCCGGGBCSCCSCCCCCHHHHHHHHHTTTCBTTC----TT---TSHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHhcCCCC----cc---cCccHHHHHHHHHHHHHHH
Confidence            344444 78888776543322 3555432 3467899999998877654422    11   1244679999999999999


Q ss_pred             cCCCCCCC--ceeeecCChHHHHHHHHHhhC-----------CCCC-EEEEcCCCCCccccccccccccccccccceEEE
Q 010008          152 FNLDENKW--GVNVQPLSGSPANFEVYTAIL-----------KPHD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES  217 (520)
Q Consensus       152 fg~~~~~~--~~~V~~~sGs~A~~~~l~all-----------~pGD-~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~  217 (520)
                      ||++....  ..-+.++.||+||+.++.+.-           .+++ .++++..   .|.+.     .+.....|.  +.
T Consensus       106 ~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~---~H~s~-----~Kaa~~~gi--~~  175 (450)
T d1pmma_         106 WHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP---VQICW-----HKFARYWDV--EL  175 (450)
T ss_dssp             TTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESS---CCHHH-----HHHHHHTTC--EE
T ss_pred             hCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecc---cHHHH-----HHHHHHcCC--Cc
Confidence            99964211  112444556699998776641           2334 3455443   24322     134556676  55


Q ss_pred             EEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHH------HHhCCEEEEechhhccccccccc
Q 010008          218 MPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIA------DAVGALLMMDMAHISGLVAASVV  289 (520)
Q Consensus       218 v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p--~~~d~~~i~~ia------~~~g~~li~D~Ah~~gli~~~~~  289 (520)
                      ..++++++++.+|+++|++++++ +|.+|++...++.  ...|+++|.+||      +++|+|+++|+|++.+..+....
T Consensus       176 ~~v~~~~~~~~~d~~~L~~~i~~-~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~  254 (450)
T d1pmma_         176 REIPMRPGQLFMDPKRMIEACDE-NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAP  254 (450)
T ss_dssp             EECCCBTTBCSCCHHHHHHHCCT-TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCT
T ss_pred             eEeeecCCCCcCcHHHHHHHhhh-CceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeech
Confidence            56667766799999999999988 8888887644433  377888887775      45799999999976554322211


Q ss_pred             --CC--CCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHh-hcc--------cCCCCCCCCChHHHHHHHHHHH
Q 010008          290 --AD--PFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA-INN--------AVFPGLQGGPHNHTIGGLAVCL  355 (520)
Q Consensus       290 --~~--p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~-i~~--------~~~p~~~g~p~~~~iaala~al  355 (520)
                        ..  .++++|.+++++|||+.+|.| |+++++++     .+... ...        .......++-....+.++...+
T Consensus       255 ~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~-----~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l  329 (450)
T d1pmma_         255 DIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDE-----EALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEF  329 (450)
T ss_dssp             TCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSG-----GGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHH
T ss_pred             hhhhhhcccceeEeecChhhccCCCCCeeEEEecCh-----hhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHH
Confidence              11  224799999999999999988 99999874     22111 100        0011223443444555556667


Q ss_pred             HHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecCCC-CC--eeEEEEecC---CCCCHHHHHHHHhhcCeEEcCCCC
Q 010008          356 KHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGS-DN--HLVLVDLRP---MGIDGARVEKILDMASITLNKNSV  428 (520)
Q Consensus       356 ~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~gt-~~--~~~~vd~~~---~g~~~~~~~~~L~~~gI~v~~~~~  428 (520)
                      +.....+|+++.++..+++++|.+.|.+ .+++++.++. ..  ..+.+.+.+   .+++..++.+.|.+.|+.++....
T Consensus       330 ~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~~~~  409 (450)
T d1pmma_         330 LRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTL  409 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTCCCSSCHHHHHHHHHTTTCBCCEEEC
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCCcccCCCCHHHHHHHHHHcCCeeeccCc
Confidence            7666678899999999999999999988 4688876432 12  234444432   346677899999999988754334


Q ss_pred             CCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          429 PGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       429 Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      |.+.  .....+|+.+.    .++++++++++++-|+++++..
T Consensus       410 p~~~--~~~~~lRvvv~----~~~t~e~~d~lv~dl~~~v~~l  446 (450)
T d1pmma_         410 GGEA--TDIVVMRIMCR----RGFEMDFAELLLEDYKASLKYL  446 (450)
T ss_dssp             CTTC--TTCEEEEEECC----TTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCc--CCcEEEEEEcc----CCCCHHHHHHHHHHHHHHHHHH
Confidence            4322  12346899764    3456889999999888887643

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.87  E-value=9.6e-22  Score=201.69  Aligned_cols=323  Identities=14%  Similarity=0.122  Sum_probs=212.7

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-CCCC
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPH  183 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al-l~pG  183 (520)
                      ....-++++.+.|....       -++.+.+.+.++|    +++++++|..+     .|.+.|||.|+++++.++ +++|
T Consensus        11 ~~~~~~~~~~~~l~~g~-------~~~~~g~~v~~fE----~~~a~~~g~~~-----~v~~~SGt~Al~lal~~l~~~~g   74 (384)
T d1b9ha_          11 YDDAERNGLVRALEQGQ-------WWRMGGDEVNSFE----REFAAHHGAAH-----ALAVTNGTHALELALQVMGVGPG   74 (384)
T ss_dssp             CCHHHHHHHHHHHHTSC-------CBTTTCSHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHHHHHHHTTCCTT
T ss_pred             CCHHHHHHHHHHHHcCC-------eeecCCHHHHHHH----HHHHHHHCcCe-----EEEeCCHHHHHHHHHHHcCCCCC
Confidence            34455666666665431       0122335688888    68899999997     366799999999999998 8999


Q ss_pred             CEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHH
Q 010008          184 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMR  263 (520)
Q Consensus       184 D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~~~d~~~i~  263 (520)
                      |+|++++.++.+..        ..+...|.  +++.++++++++.+|++.+++.+++ ++|+|++. +.++...|++++.
T Consensus        75 deVi~p~~t~~a~~--------~ai~~~g~--~p~~~d~~~~~~~~d~~~~~~~i~~-~tk~i~~~-~~~g~~~d~~~i~  142 (384)
T d1b9ha_          75 TEVIVPAFTFISSS--------QAAQRLGA--VTVPVDVDAATYNLDPEAVAAAVTP-RTKVIMPV-HMAGLMADMDALA  142 (384)
T ss_dssp             CEEEEESSSCTHHH--------HHHHHTTC--EEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCB-CGGGCCCCHHHHH
T ss_pred             CEEEEecccccccc--------cccccccc--ccccccccccccccchhhhcccccc-cccccccc-cccccccccccch
Confidence            99999998765432        13445565  7888888888899999999999988 88887653 4445578999999


Q ss_pred             HHHHHhCCEEEEechhhcccccccccCCCCCcccEEE--eccCcccCCCCceEEEeeCCCcchhhHHHhhcccC------
Q 010008          264 QIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVT--TTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAV------  335 (520)
Q Consensus       264 ~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~--~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i~~~~------  335 (520)
                      ++|+++|++||.|+||+.|....+.....  ..|+.+  ++.+|.+.+..||+|+++++     ++.++++...      
T Consensus       143 ~~~~~~~i~lieD~a~a~ga~~~g~~~g~--~g~~~~~Sf~~~K~i~~g~GG~i~t~~~-----~~~~~~~~~~~~g~~~  215 (384)
T d1b9ha_         143 KISADTGVPLLQDAAHAHGARWQGKRVGE--LDSIATFSFQNGKLMTAGEGGAVVFPDG-----ETEKYETAFLRHSCGR  215 (384)
T ss_dssp             HHHHHHTCCBCEECTTCTTCEETTEEGGG--SSSCEEEECCTTSSSCSSSCEEEEECTT-----CHHHHHHHHHHTBTTC
T ss_pred             hhhhhhhhhhhhhhceecccccCCEecCc--ccccceecccccccccccccchhhhhhH-----HHHHHHHHHHhcCCCC
Confidence            99999999999999999988766543322  345555  55569998889999999886     4443322110      


Q ss_pred             ------CC-CCCCC-ChHHHH-HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecC---CC-CCe-eEEE
Q 010008          336 ------FP-GLQGG-PHNHTI-GGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSG---GS-DNH-LVLV  400 (520)
Q Consensus       336 ------~p-~~~g~-p~~~~i-aala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~---gt-~~~-~~~v  400 (520)
                            +. ...|. ..++.+ |++  ++.++  ..+++..++..++++.+.+.|.+ .++.....   .. .++ +..+
T Consensus       216 ~~~~~~~~~~~~G~n~rms~l~Aai--g~~qL--~~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~  291 (384)
T d1b9ha_         216 PRDDRRYFHKIAGSNMRLNEFSASV--LRAQL--ARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMF  291 (384)
T ss_dssp             CTTCSSCCCCSCCCBCBCBHHHHHH--HHHHH--TTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEE
T ss_pred             ccccccccccccccccccccchhhh--hhhhh--hhcccchhhhhhhhhhhhhhhhcccccccccccccccccccccccc
Confidence                  00 01111 111222 332  33333  34567778888889999999987 46654321   11 122 3333


Q ss_pred             EecCCC-CCHHHHHHHHhhcCeEEcCCCCCCCCC-C-----------------------CCCCEEEEccCCccccCCC-H
Q 010008          401 DLRPMG-IDGARVEKILDMASITLNKNSVPGDKS-A-----------------------LVPGGIRIGSPAMTTRGFS-E  454 (520)
Q Consensus       401 d~~~~g-~~~~~~~~~L~~~gI~v~~~~~Pg~~~-~-----------------------~~~~giRig~~~~tt~g~~-~  454 (520)
                      .+.... .+.+.+.+.|.+.||.+...+.|-+.. .                       .....|.|.+.    .+++ +
T Consensus       292 ~~~~~~~~~Rd~l~~~L~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~----~~Lt~e  367 (384)
T d1b9ha_         292 RIPGLTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHR----VLLAGE  367 (384)
T ss_dssp             ECTTCCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGG----GGGSCH
T ss_pred             eecccccccHHHHHHHHHHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCC----CCCCCH
Confidence            332111 013468899999999987654432110 0                       00124666443    2455 6


Q ss_pred             HHHHHHHHHHHHHHHH
Q 010008          455 KEFVAIADFIHEGVEI  470 (520)
Q Consensus       455 ~d~~~la~~i~~~l~~  470 (520)
                      +|++++++.|++++..
T Consensus       368 ~ei~~I~~~i~~~l~~  383 (384)
T d1b9ha_         368 PELHATAEIIADAVAR  383 (384)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            8999999999998863

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.87  E-value=8.6e-22  Score=202.48  Aligned_cols=333  Identities=15%  Similarity=0.129  Sum_probs=210.2

Q ss_pred             ccceEe-cCCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHH
Q 010008           94 KSLELI-ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN  172 (520)
Q Consensus        94 ~~i~Li-asen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~  172 (520)
                      +.+.|. ++..++|..|++++..++.+.+..+  ..+...+..+.+.+ +.+++++++++|++++++   +.+.++|+++
T Consensus        27 ~~iYLd~as~g~~p~~v~~a~~~~l~~~~~~~--~~~~~~~~~~~~~~-e~~R~~iA~llga~~~ei---~~~~~~T~~~  100 (404)
T d1qz9a_          27 GVIYLDGNSLGARPVAALARAQAVIAEEWGNG--LIRSWNSAGWRDLS-ERLGNRLATLIGARDGEV---VVTDTTSINL  100 (404)
T ss_dssp             TCEECCTTTSCCCBTTHHHHHHHHHHTCCCCC--GGGHHHHTSGGGHH-HHHHHHHHTTTTCCTTSE---EECSCHHHHH
T ss_pred             CCEEcCCcccccCCHHHHHHHHHHHHHHhccc--CcccccchhHHHHH-HHHHHHHHHHhCCCCCcE---EEecCchHHH
Confidence            446664 4667899999999999988765432  21111111223344 367899999999999864   2344566777


Q ss_pred             HHHHHh------hCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEE
Q 010008          173 FEVYTA------ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI  246 (520)
Q Consensus       173 ~~~l~a------ll~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklI  246 (520)
                      ..++.+      ...+||.|++.+..+....   ...     ...+.  +.....++ .++.++.+.+++++++ +|++|
T Consensus       101 ~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~---~~~-----~~~~~--~~~~~~~~-~~~~~~~~~~~~~i~~-~T~lV  168 (404)
T d1qz9a_         101 FKVLSAALRVQATRSPERRVIVTETSNFPTD---LYI-----AEGLA--DMLQQGYT-LRLVDSPEELPQAIDQ-DTAVV  168 (404)
T ss_dssp             HHHHHHHHHHHHHHSTTCCEEEEETTSCHHH---HHH-----HHHHH--HHHCSSCE-EEEESSGGGHHHHCST-TEEEE
T ss_pred             HHHhhhhhhhhcccCCCcEEEEeccccchHH---HHH-----Hhhhh--eeeeecee-ccccccchhHHHhcCC-CceEE
Confidence            665542      2478999998876543221   100     00111  11111111 1356778899999988 89999


Q ss_pred             EEcCCCCC--CCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc--eEEEeeCCCc
Q 010008          247 IAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG--GMIFFKKDPV  322 (520)
Q Consensus       247 i~~~s~~p--~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg--G~I~~~~~~~  322 (520)
                      ++.+.+|.  ..+|+++|+++|+++|+.+++|++|+.|.+..++...   ++|++++|.|||+.+|.|  |+++.++.  
T Consensus       169 ~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~---~~d~~~~s~~K~~~~~~g~~g~~~~~~~--  243 (404)
T d1qz9a_         169 MLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQA---GADYAIGCTYKYLNGGPGSQAFVWVSPQ--  243 (404)
T ss_dssp             EEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHH---TCSEEEECSSSTTCCCTTCCCEEEECTT--
T ss_pred             EEecccccccceecHHHHhccccccccceeEEeeccccccccccccc---cceEEEEechhhcccCCceEEEEEechh--
Confidence            99865543  4899999999999999999999999998764332221   689999999999866554  55665543  


Q ss_pred             chhhHHHhhcc----------------------cCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH-
Q 010008          323 LGVELESAINN----------------------AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALAS-  379 (520)
Q Consensus       323 ~~~~l~~~i~~----------------------~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~-  379 (520)
                          +.+.+..                      .......+++.......+..++......+.....++.....+.+.. 
T Consensus       244 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  319 (404)
T d1qz9a_         244 ----LCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIEL  319 (404)
T ss_dssp             ----TTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             ----hhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHH
Confidence                1111100                      0001124566666666666666665554444444444444443333 


Q ss_pred             --HHHH-CCCEEecCCC-C--CeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccC-CccccCC
Q 010008          380 --RLVE-LGYKLVSGGS-D--NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSP-AMTTRGF  452 (520)
Q Consensus       380 --~L~~-~G~~v~~~gt-~--~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~-~~tt~g~  452 (520)
                        .+.. .|++++++.. +  ..++.+.+.    ++..+.+.|.+.||.+...         .++.||||.. .+||   
T Consensus       320 ~~~~~~~~~~~i~~p~~~~~r~~~vsf~~~----~~~~v~~~L~~~gi~~~~r---------~~~~lRiS~~h~ynt---  383 (404)
T d1qz9a_         320 VEQRCAAHELTLVTPREHAKRGSHVSFEHP----EGYAVIQALIDRGVIGDYR---------EPRIMRFGFTPLYTT---  383 (404)
T ss_dssp             HHHHHTTSCCEECSCSSGGGBCSEEEEECT----THHHHHHHHHTTTEECEEE---------TTTEEEEECCTTTCC---
T ss_pred             HHhhccCCCEEEECCCCccceeeEEEEecC----CHHHHHHHHHHCCCEEeec---------CCCeEEEECCCCCCC---
Confidence              3333 6899886521 1  123333332    5788999999999976421         2568999974 4565   


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q 010008          453 SEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       453 ~~~d~~~la~~i~~~l~~  470 (520)
                       ++|++++++.|+++++.
T Consensus       384 -~~did~~~~~L~~vl~~  400 (404)
T d1qz9a_         384 -FTEVWDAVQILGEILDR  400 (404)
T ss_dssp             -HHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHh
Confidence             89999999999999874

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.86  E-value=1.1e-20  Score=187.28  Aligned_cols=316  Identities=18%  Similarity=0.178  Sum_probs=197.1

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCC
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHD  184 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD  184 (520)
                      ++|+|++||.+..        .|...|+..+.+.++|    +++++++|.+.     .+.++||++||.+++.++.++||
T Consensus        12 p~p~v~~A~~~a~--------~g~~~yg~~p~~~~le----~~lA~~~G~~~-----~~~~~sGt~A~~~al~a~~~~g~   74 (343)
T d1m6sa_          12 PTEEMRKAMAQAE--------VGDDVYGEDPTINELE----RLAAETFGKEA-----ALFVPSGTMGNQVSIMAHTQRGD   74 (343)
T ss_dssp             CCHHHHHHHHTCC--------CCCGGGTCCHHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHHHHHHHHCCTTC
T ss_pred             CCHHHHHHHHhhh--------cCCcccCCCHHHHHHH----HHHHHHHCCCe-----EEEeCCHHHHHHHHHHHHhccCC
Confidence            4789999996532        2233466778888888    67899999874     35568999999999999999999


Q ss_pred             EEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc-----CCcEEEEc-CCCCCC--C
Q 010008          185 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAG-ASAYPR--D  256 (520)
Q Consensus       185 ~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~-----~pklIi~~-~s~~p~--~  256 (520)
                      .+++..+.+..+..+..     .....+.  ....++  ...+..|++.+++.+...     ++..+++. .+++++  .
T Consensus        75 ~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (343)
T d1m6sa_          75 EVILEADSHIFWYEVGA-----MAVLSGV--MPHPVP--GKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRV  145 (343)
T ss_dssp             EEEEETTCHHHHSSTTH-----HHHHTCC--EEEEEC--EETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBC
T ss_pred             ceeccccccceeeeccc-----ccccccc--eeeccc--cccCccCHHHHHHhhhhhhcccccccccccccccccCCcee
Confidence            99998876543321110     1111222  333332  235678999999888752     23334333 344443  3


Q ss_pred             C---CHHHHHHHHHHhCCEEEEechhhcccccccccCC--CCCcccEEEeccCcccCCCCceEEEeeCCCcchhhHHHhh
Q 010008          257 F---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAI  331 (520)
Q Consensus       257 ~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~--p~~~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i  331 (520)
                      .   ++++|+++|+++|+++++|++|..+.........  .....+..+++.+|...|..+|++....      +....+
T Consensus       146 ~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~  219 (343)
T d1m6sa_         146 VPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDR------DFIERA  219 (343)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECH------HHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhccccccccccccccccccccccccccH------HHHhhh
Confidence            3   4667888889999999999997654432211110  0113557777888888888888887776      333322


Q ss_pred             ccc-CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHH
Q 010008          332 NNA-VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGA  410 (520)
Q Consensus       332 ~~~-~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~  410 (520)
                      ... .+.+. +.+.....++..........    .+.++..+++..+.+.+.+.+.........++++++++...+.++.
T Consensus       220 ~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~  294 (343)
T d1m6sa_         220 RKARKMLGG-GMRQAGVLAAAGIIALTKMV----DRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAH  294 (343)
T ss_dssp             HHHHHHHTC-CCSSTHHHHHHHHHHHHHSS----TTHHHHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTSSSCHH
T ss_pred             HhhCccccc-ccchhHHHHHhhhhhhhhhH----HHHHHHHHHHHHhhhHHHHhccCccCCCCCceEEEEEeCCCcccHH
Confidence            211 11111 11111222222222222111    2234455566667777766433333323456788888876677888


Q ss_pred             HHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          411 RVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       411 ~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      ++.+.|.+.||.++.         ..+..+|++++    .+.+++|++++++.|+++++.
T Consensus       295 ~l~~~L~~~Gi~v~~---------~~~~~iRi~~~----~~~t~edid~~v~~l~~v~~~  341 (343)
T d1m6sa_         295 GFIEALRNSGVLANA---------VSDTEIRLVTH----KDVSRNDIEEALNIFEKLFRK  341 (343)
T ss_dssp             HHHHHHHHHTEECEE---------EETTEEEEECC----TTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEec---------CCCCEEEEECC----CCCCHHHHHHHHHHHHHHHHH
Confidence            899999999999853         23568999765    346799999999999998874

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.85  E-value=1e-20  Score=195.52  Aligned_cols=355  Identities=16%  Similarity=0.166  Sum_probs=207.4

Q ss_pred             ccccChH-HHHHHHHHHHHh-hccceEecC----CC---CChHHHHHHHhhhhhcc-CCCCCCCCCCCCcchhHHHHHHH
Q 010008           74 LGEADPE-VCEIITKEKERQ-FKSLELIAS----EN---FTSRAVMEAVGSCLTNK-YSEGLPGKRYYGGNEYIDELETL  143 (520)
Q Consensus        74 l~~~d~~-~~~~~~~e~~~~-~~~i~Lias----en---~~~~~V~ea~~s~l~~~-y~~G~p~~ryy~g~~~~d~lE~~  143 (520)
                      +...+|+ ++.++.+-++.. .+.|+|..+    ++   ++.+.|++|+.....+. ..++|+.   ..|   ..++.+.
T Consensus         9 ~~~~~~~~i~~l~~~~~~d~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p---~~G---~p~lrea   82 (412)
T d1ajsa_           9 VPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLP---ILG---LAEFRTC   82 (412)
T ss_dssp             CCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCC---TTC---CHHHHHH
T ss_pred             CCcCCCChHHHHHHHHhcCCCCCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCC---CCC---CHHHHHH
Confidence            5555443 676555433211 256999877    22   35689999877655433 2334543   223   3466655


Q ss_pred             HHHHHHHHcCCC--CCCCceeeecCChHHHHHHH-------HHhhCCCCCEEEEcCCCCCccccccccccccccccccce
Q 010008          144 CQKRALAAFNLD--ENKWGVNVQPLSGSPANFEV-------YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY  214 (520)
Q Consensus       144 a~~~~~~lfg~~--~~~~~~~V~~~sGs~A~~~~-------l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~  214 (520)
                      +.+++.+..+.+  .+.+ +.++..+++.++..+       +.++++|||+|++++|.|+++..        .+...|..
T Consensus        83 ia~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~--------~~~~~G~~  153 (412)
T d1ajsa_          83 ASRLALGDDSPALQEKRV-GGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNG--------VFTTAGFK  153 (412)
T ss_dssp             HHHHHHCTTCHHHHTTCE-EEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHH--------HHHHTTCS
T ss_pred             HHHHHhccCCcccccccc-eeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHH--------HHHHcCCe
Confidence            556665544432  3322 234333433444333       23347999999999998876532        33445542


Q ss_pred             -EEEEEcccCCCCCCCCHHHHHHHhhh--cCCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccc
Q 010008          215 -FESMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAA  286 (520)
Q Consensus       215 -~~~v~~~~d~~~~~iD~d~le~~i~~--~~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~  286 (520)
                       ..+..+ .+.+.+.+|++.+++....  .++++++++.|+||+  .+   .+++|.++|++||+++++|++ |.++.+.
T Consensus       154 ~v~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~-Y~~l~~~  231 (412)
T d1ajsa_         154 DIRSYRY-WDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSA-YQGFASG  231 (412)
T ss_dssp             CEEEEEC-EETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEES-CTTTTTS
T ss_pred             EEEeecc-cccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHh-hhhhhcC
Confidence             122222 2334567899888776543  267888888999997  44   478899999999999999999 4566655


Q ss_pred             cccCCCC------C--cccEEEeccCccc--CCCCceEEEeeCCCc-chhhHHHhhcccCCCCCCCCChHHHHHHHHH-H
Q 010008          287 SVVADPF------K--YCDVVTTTTHKSL--RGPRGGMIFFKKDPV-LGVELESAINNAVFPGLQGGPHNHTIGGLAV-C  354 (520)
Q Consensus       287 ~~~~~p~------~--~aDiv~~S~hK~l--~GprgG~I~~~~~~~-~~~~l~~~i~~~~~p~~~g~p~~~~iaala~-a  354 (520)
                      +....++      .  ...+++.|++|++  .|+|.|+++++.... ....+...+...........+...+.++..+ .
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (412)
T d1ajsa_         232 NLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLS  311 (412)
T ss_dssp             CHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHH
T ss_pred             CcccchhhhhhhhhhcccccccccccccccCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhc
Confidence            4321111      0  1237778888875  789999999987421 0001111111111111222222222221111 1


Q ss_pred             ----HHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCE----EecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCC
Q 010008          355 ----LKHAQSPEFKVYQNKVVSNCRALASRLVELGYK----LVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKN  426 (520)
Q Consensus       355 ----l~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~----v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~  426 (520)
                          .++. ..+++.+.+++.++++.+.+.|.+.|..    .+.+ ....+.|+     +++.+.+.++++++||.+   
T Consensus       312 ~~~~~~~~-~~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~-~~G~F~~~-----~ls~~~v~~L~~e~gV~~---  381 (412)
T d1ajsa_         312 DPELFHEW-TGNVKTMADRILSMRSELRARLEALKTPGTWNHITD-QIGMFSFT-----GLNPKQVEYLINQKHIYL---  381 (412)
T ss_dssp             SHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHH-CCSSEEEC-----CCCHHHHHHHHHTTCEEC---
T ss_pred             CHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeecC-CCeEEEec-----CCCHHHHHHHHHhCCEEE---
Confidence                1111 1234666777888899999999886543    2221 12234332     346788888889999987   


Q ss_pred             CCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          427 SVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       427 ~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                       +||         .||+...     .+++++++++++|+++++.
T Consensus       382 -vpg---------~Ri~~ag-----~~~~~i~~~a~aI~~av~~  410 (412)
T d1ajsa_         382 -LPS---------GRINMCG-----LTTKNLDYVATSIHEAVTK  410 (412)
T ss_dssp             -CTT---------SEEEGGG-----CCTTTHHHHHHHHHHHHHH
T ss_pred             -eCC---------CeEEecc-----CCHHHHHHHHHHHHHHHHh
Confidence             554         2888653     4468999999999999874

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=2.3e-20  Score=187.52  Aligned_cols=303  Identities=17%  Similarity=0.162  Sum_probs=196.6

Q ss_pred             ccceEecCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC---CCCCCCceeeecCCh
Q 010008           94 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN---LDENKWGVNVQPLSG  168 (520)
Q Consensus        94 ~~i~Liasen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg---~~~~~~~~~V~~~sG  168 (520)
                      +.|.|..+||+  +|+.+.+++...+.......||.    .|.   .++++    .+++.++   ++++    +|.+++|
T Consensus        20 d~~~l~~~enp~~~p~~i~~~~~~~~~~~~~~~yp~----~g~---~~Lr~----aia~~~~~~~v~~d----~I~it~G   84 (334)
T d2f8ja1          20 DKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYD----SPD---EELIE----KILSYLDTDFLSKN----NVSVGNG   84 (334)
T ss_dssp             CSEECSSCCCSSCCCHHHHHHHHHHCCTTGGGSCCC----SSC---HHHHH----HHHHHHTCSSCCGG----GEEEEEH
T ss_pred             CceEEECCCCCCCCCHHHHHHHHHHhhcchhcCCCC----CCc---HHHHH----HHHHHhcccCCCcc----eEEecCc
Confidence            66888889984  67899999888776543334443    122   24443    3344444   4554    5777999


Q ss_pred             H-HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 010008          169 S-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII  247 (520)
Q Consensus       169 s-~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi  247 (520)
                      + +|+.+++    ++||+|++.+|.|.++.        ......|.  +++.++++++....+      ...+ ++++++
T Consensus        85 ~~~~l~~l~----~~~d~v~i~~P~y~~~~--------~~~~~~g~--~~v~v~~~~~~~~~~------~~~~-~~~~l~  143 (334)
T d2f8ja1          85 ADEIIYVMM----LMFDRSVFFPPTYSCYR--------IFAKAVGA--KFLEVPLTKDLRIPE------VNVG-EGDVVF  143 (334)
T ss_dssp             HHHHHHHHH----HHSSEEEECSSCCHHHH--------HHHHHHTC--CEEECCCCTTSCCCC------CCCC-TTEEEE
T ss_pred             chhHHHHHh----hhccccccccccccccc--------cchhccCC--ccccccccccccccc------cccc-cceEEE
Confidence            8 6666544    45799999999876542        12344565  777888875432221      2333 789999


Q ss_pred             EcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEEEeccCccc--CCCCceEEEeeCCCc
Q 010008          248 AGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSL--RGPRGGMIFFKKDPV  322 (520)
Q Consensus       248 ~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~S~hK~l--~GprgG~I~~~~~~~  322 (520)
                      ++.|+||+  ..+.+.+.+++ ++++++++|.+++.. ........... ..-+++.|++|++  +|+|.||+++++   
T Consensus       144 l~nP~NPtG~~~s~~~l~~~~-~~~~~ii~Dd~~~~~-~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~---  218 (334)
T d2f8ja1         144 IPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEF-HGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASE---  218 (334)
T ss_dssp             EESSCTTTCCCCCHHHHHHHH-TTTCEEEEECTTGGG-TCCCCGGGGGTCSSEEEEEESTTTSSCTTTCEEEEEECH---
T ss_pred             ecccccccceeecHHHhhccc-cceeEEeecccchhh-cccccccccccCceEEEEecCccccchhhhhhhhcccch---
Confidence            99999997  67888887765 579999999986432 22111111111 1237889999974  789999999987   


Q ss_pred             chhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEe
Q 010008          323 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDL  402 (520)
Q Consensus       323 ~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~  402 (520)
                         ++.+++.......  +.....+.++ ...+..  ...+.+..+++.++++.+.+.|++.|+++..+.  ..++|+++
T Consensus       219 ---~~i~~l~~~~~~~--~~s~~~~~~a-~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~--g~f~~~~~  288 (334)
T d2f8ja1         219 ---KFIDAYNRVRLPF--NVSYVSQMFA-KVALDH--REIFEERTKFIVEERERMKSALREMGYRITDSR--GNFVFVFM  288 (334)
T ss_dssp             ---HHHHHHHHHSCTT--CSCHHHHHHH-HHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCC--SSEEEEEC
T ss_pred             ---HHHHHHHHhhccc--ccchhhhhhc-cccccc--ccchhhHHHHHHHHHHHHHHHHHHCCCeECCCC--ceEEEEEC
Confidence               6777776543322  2222222222 223332  133467788889999999999999999987542  34567665


Q ss_pred             cCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          403 RPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       403 ~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      ..  .+.+++.+.|.+.||.|..          .+++|||++.       +.+|++++.+.|++
T Consensus       289 ~~--~~~~~~~~~L~~~GI~vr~----------~~~~vRis~g-------~~ee~~~l~~~l~~  333 (334)
T d2f8ja1         289 EK--EEKERLLEHLRTKNVAVRS----------FREGVRITIG-------KREENDMILRELEV  333 (334)
T ss_dssp             CH--HHHHHHHHHHHHTTEECEE----------ETTEEEEECC-------CHHHHHHHHHHHHH
T ss_pred             CC--CCHHHHHHHHHHCCCEECC----------CCCeEEEEcC-------CHHHHHHHHHHHhc
Confidence            42  2567788889999998842          1479999853       36788888777653

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=6.8e-21  Score=195.84  Aligned_cols=352  Identities=14%  Similarity=0.146  Sum_probs=203.1

Q ss_pred             ccccChH-HHHHHHHHHHHh-hccceEecC----CC---CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHH
Q 010008           74 LGEADPE-VCEIITKEKERQ-FKSLELIAS----EN---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLC  144 (520)
Q Consensus        74 l~~~d~~-~~~~~~~e~~~~-~~~i~Lias----en---~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a  144 (520)
                      +...+|+ ++.+.++-++.. .+.|+|..+    ++   ++++.|++|+...+.+..+.+|+.   ..|   ..++.+.+
T Consensus         5 ~~~~p~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p---~~G---~~~lR~ai   78 (396)
T d2q7wa1           5 ITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLG---IDG---IPEFGRCT   78 (396)
T ss_dssp             CCCCCC-----------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCC---TTC---CHHHHHHH
T ss_pred             cccCCCChHHHHHHHHhccCCCCcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCC---CcC---CHHHHHHH
Confidence            4444543 455443322221 256899876    22   467999999988777665556654   223   33555555


Q ss_pred             HHHHHHHcCCC--CCCCceeeecCChHHH--HHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEc
Q 010008          145 QKRALAAFNLD--ENKWGVNVQPLSGSPA--NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY  220 (520)
Q Consensus       145 ~~~~~~lfg~~--~~~~~~~V~~~sGs~A--~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~  220 (520)
                      .+++.+..+..  .+.. ..++..+|+.+  +...+.+++++||.|++++|.+.++..        .+...|.  +++.+
T Consensus        79 a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~--------~~~~~g~--~~~~~  147 (396)
T d2q7wa1          79 QELLFGKGSALINDKRA-RTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKS--------VFNSAGL--EVREY  147 (396)
T ss_dssp             HHHHHCTTCHHHHTTCE-EEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHH--------HHHHTTC--EEEEE
T ss_pred             HHHHHhhcCCcccccce-eeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchH--------HHHHcCC--eeEec
Confidence            56666655543  2211 22333333333  334445568999999999998766532        3345665  55555


Q ss_pred             ccCC-CCCCCCHHHHHHHhhhc--CCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCC-
Q 010008          221 RLDE-STGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD-  291 (520)
Q Consensus       221 ~~d~-~~~~iD~d~le~~i~~~--~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~-  291 (520)
                      +... +++..+.+.+++.....  +++++++++|+||+  ..   .+++|.++|+++++++|+|++ |.++.+.+.... 
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~-Y~~l~~~~~~~~~  226 (396)
T d2q7wa1         148 AYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFA-YQGFARGLEEDAE  226 (396)
T ss_dssp             ECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEES-CTTSSSCHHHHTH
T ss_pred             ccccccccccccchHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEecc-ccccccCCccCch
Confidence            5543 34566777766654332  56788888999997  44   467888999999999999999 567765542211 


Q ss_pred             CCC------cccEEEeccCccc--CCCCceEEEeeCCCcch-hhHHHhhcccCCCCCCCCChHHHHHHHHHHHH-----H
Q 010008          292 PFK------YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLG-VELESAINNAVFPGLQGGPHNHTIGGLAVCLK-----H  357 (520)
Q Consensus       292 p~~------~aDiv~~S~hK~l--~GprgG~I~~~~~~~~~-~~l~~~i~~~~~p~~~g~p~~~~iaala~al~-----~  357 (520)
                      .+.      ...+++.|++|++  +|+|.||++++...... ................+.+...+.++.. .+.     .
T Consensus       227 ~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~-~~~~~~~~~  305 (396)
T d2q7wa1         227 GLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVAT-ILSNDALRA  305 (396)
T ss_dssp             HHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHH-HHTSHHHHH
T ss_pred             HhhhhhhhcccccccccccccccccCCCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHH-HhcCchhHH
Confidence            111      1237778889975  79999999998742100 0000111111111223333333333221 111     0


Q ss_pred             hcCchhHHHHHHHHHHHHHHHHHHHHCCCE----EecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCC
Q 010008          358 AQSPEFKVYQNKVVSNCRALASRLVELGYK----LVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKS  433 (520)
Q Consensus       358 ~~~~~~~~~~~~i~~na~~l~~~L~~~G~~----v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~  433 (520)
                      .....++++.+++.++++.+.+.|.+.|..    .+.+ ....+.|+     +++.+.++++++++||.+    +||.  
T Consensus       306 ~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~-~~G~F~~~-----~l~~e~~~~L~~e~gV~~----~~g~--  373 (396)
T d2q7wa1         306 IWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIK-QNGMFSFS-----GLTKEQVLRLREEFGVYA----VASG--  373 (396)
T ss_dssp             HHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHH-CCSSEEEC-----CCCHHHHHHHHHHHCEEC----CTTC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceecC-CCeEEEee-----CCCHHHHHHHHHhCCEEE----CCCC--
Confidence            011234566777888899999999987643    2222 12344453     345678888889999987    4431  


Q ss_pred             CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          434 ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       434 ~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                             ||++..     ++++++++++++|++++
T Consensus       374 -------Ri~~a~-----l~~~~i~~~~~ai~~v~  396 (396)
T d2q7wa1         374 -------RVNVAG-----MTPDNMAPLCEAIVAVL  396 (396)
T ss_dssp             -------EEEGGG-----CCTTTHHHHHHHHHHHC
T ss_pred             -------EEEecC-----CCHHHHHHHHHHHHHhC
Confidence                   888654     45689999999998864

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.83  E-value=1.8e-20  Score=193.76  Aligned_cols=355  Identities=14%  Similarity=0.184  Sum_probs=208.5

Q ss_pred             hccccChH-HHHHHHHHHHHh-h-ccceEecC----CC---CChHHHHHHHhhhhhc-cCCCCCCCCCCCCcchhHHHHH
Q 010008           73 SLGEADPE-VCEIITKEKERQ-F-KSLELIAS----EN---FTSRAVMEAVGSCLTN-KYSEGLPGKRYYGGNEYIDELE  141 (520)
Q Consensus        73 ~l~~~d~~-~~~~~~~e~~~~-~-~~i~Lias----en---~~~~~V~ea~~s~l~~-~y~~G~p~~ryy~g~~~~d~lE  141 (520)
                      ++...+|+ ++.+.++ .+.. . +.|+|..+    ++   ++.+.|++|......+ ....+|+.   ..|   ..++.
T Consensus         7 ~~~~~~~d~i~~~~~~-~~~d~~~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p---~~G---~~~lr   79 (412)
T d1yaaa_           7 NIELLPPDALFGIKQR-YGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLG---ITG---LPSLT   79 (412)
T ss_dssp             TCCCCCCCTTHHHHHH-HHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCC---TTC---CHHHH
T ss_pred             cCCcCCCChHHHHHHH-HhcCCCCCcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCC---CCC---CHHHH
Confidence            35555554 5655533 3322 2 46898765    33   3568999987655433 23345543   123   33555


Q ss_pred             HHHHHHHHHHcCCC-CCCCceeeecCChHHHHH--HHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEE
Q 010008          142 TLCQKRALAAFNLD-ENKWGVNVQPLSGSPANF--EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESM  218 (520)
Q Consensus       142 ~~a~~~~~~lfg~~-~~~~~~~V~~~sGs~A~~--~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v  218 (520)
                      +.+.+++.+..+.. .++..+.++..+|..+..  +.+..++.|||+|++++|.+..+..        .+...|.  +++
T Consensus        80 ~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~--------~~~~~g~--~~~  149 (412)
T d1yaaa_          80 SNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMA--------IFENQGL--KTA  149 (412)
T ss_dssp             HHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHH--------HHHTTTC--CEE
T ss_pred             HHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHH--------HHHHcCC--cee
Confidence            55556665544432 111212222222333332  3344568899999999998766532        2344565  444


Q ss_pred             EcccC-CCCCCCCHHHHHHHhhhc--CCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          219 PYRLD-ESTGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       219 ~~~~d-~~~~~iD~d~le~~i~~~--~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .+++. .+++.+|.+.+++.+...  ++++++++.|+||+  .+   .+++|.++|+++++++++|++ |.++++.+...
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~-Y~~l~~~~~~~  228 (412)
T d1yaaa_         150 TYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTA-YQGFATGDLDK  228 (412)
T ss_dssp             EEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEES-CTTTSSSCHHH
T ss_pred             cccccccccccccchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecce-eeecccCCccc
Confidence            44432 245788988888777642  34688888999997  44   478899999999999999999 56777654322


Q ss_pred             CCC---------Cc--ccEEEeccCccc--CCCCceEEEeeCCCc-chhhHHHhhc----ccCCCCCCCCChHHHHHHHH
Q 010008          291 DPF---------KY--CDVVTTTTHKSL--RGPRGGMIFFKKDPV-LGVELESAIN----NAVFPGLQGGPHNHTIGGLA  352 (520)
Q Consensus       291 ~p~---------~~--aDiv~~S~hK~l--~GprgG~I~~~~~~~-~~~~l~~~i~----~~~~p~~~g~p~~~~iaala  352 (520)
                      .+.         ..  --+++.|++|++  +|+|.||++++.+.. ...+..+.+.    ........+.+...+.++. 
T Consensus       229 ~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~-  307 (412)
T d1yaaa_         229 DAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVA-  307 (412)
T ss_dssp             HTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHH-
T ss_pred             chhhhhhhhhccccCCCeEEEEecCCccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH-
Confidence            111         11  127889999975  799999999987531 1111111111    1111112233333333222 


Q ss_pred             HHHH-----HhcCchhHHHHHHHHHHHHHHHHHHHHCCCE----EecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEE
Q 010008          353 VCLK-----HAQSPEFKVYQNKVVSNCRALASRLVELGYK----LVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITL  423 (520)
Q Consensus       353 ~al~-----~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~----v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v  423 (520)
                      ..+.     .....+++.+.+.+.++++.+.+.|.+.|..    .+.+ ....+.|+     +++.+.++++++++||.+
T Consensus       308 ~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~-~gG~F~~~-----~ls~e~~~~L~~e~~V~~  381 (412)
T d1yaaa_         308 KLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVN-QCGMFSFT-----GLTPQMVKRLEETHAVYL  381 (412)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHH-CCSSEEEC-----CCCHHHHHHHHHHHCEEC
T ss_pred             HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeCC-CceEEEec-----CcCHHHHHHHHHhCCEEE
Confidence            1221     1111234677788888899999999886532    2222 12344443     346778888889999987


Q ss_pred             cCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          424 NKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       424 ~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                          .||         .||++..     ++++.+++++++|+++++.
T Consensus       382 ----~~g---------~Ris~~g-----~~~~~i~~l~~ai~~v~k~  410 (412)
T d1yaaa_         382 ----VAS---------GRASIAG-----LNQGNVEYVAKAIDEVVRF  410 (412)
T ss_dssp             ----CTT---------SEEEGGG-----CCTTTHHHHHHHHHHHHHH
T ss_pred             ----CCC---------CEEEecc-----CCHHHHHHHHHHHHHHHHh
Confidence                332         4888654     4468899999999998863

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.83  E-value=5.8e-20  Score=191.02  Aligned_cols=303  Identities=15%  Similarity=0.141  Sum_probs=195.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh--CCCCCEEEEcCCCCCccccccccccccccccccc
Q 010008          136 YIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  213 (520)
Q Consensus       136 ~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al--l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~  213 (520)
                      ....+|.....++++++|.+..   ..+.+++|+.++.++++++  ..++++|+++...|.+..        +.+.+.|.
T Consensus       110 ~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~--------k~~~~~g~  178 (434)
T d2z67a1         110 IMYALTNKILESFFKQLGLNVH---AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPI--------KAVSFVGM  178 (434)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCE---EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH--------HHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhcCCCcc---eeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHH--------HHHHHhCC
Confidence            3455666666778899999764   2344455557777788776  347899999887664332        23445565


Q ss_pred             eEEEEEcccCCCCCCCCHHHHHHHhhhc----CCcEEEEcCCCCC-C-CCCHHHHHHHHHHhCCEEEEechhhccccccc
Q 010008          214 YFESMPYRLDESTGLVDYDMLEKTAILF----RPKLIIAGASAYP-R-DFDYPRMRQIADAVGALLMMDMAHISGLVAAS  287 (520)
Q Consensus       214 ~~~~v~~~~d~~~~~iD~d~le~~i~~~----~pklIi~~~s~~p-~-~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~  287 (520)
                      ....+....+.+++.+|+++|++++++.    ++.+|++..+++. + ..|+++|+++|+++|+++++|+||..+.....
T Consensus       179 ~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~  258 (434)
T d2z67a1         179 NMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYL  258 (434)
T ss_dssp             EEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHH
T ss_pred             cceEEEeecCCCccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhcc
Confidence            4333333234456889999999999753    4566777777654 3 67899999999999999999999865543221


Q ss_pred             -ccCCCCC-cccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhH
Q 010008          288 -VVADPFK-YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK  364 (520)
Q Consensus       288 -~~~~p~~-~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~  364 (520)
                       ....+.. ++|++++|+||++.+|.| |+++++++     ++.+++... .++...+  . ....+.+++..+...+++
T Consensus       259 ~~~~~~~~~~~D~~~~s~hK~l~~~~g~~~~~~~~~-----~~~~~~~~~-~~~~~~~--~-~~~~~~a~l~~~~~~g~~  329 (434)
T d2z67a1         259 EKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDA-----EFIKEISLS-YPGRASA--T-PVVNTLVSLLSMGSKNYL  329 (434)
T ss_dssp             HHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCH-----HHHHHHHTT-SCSCBCS--H-HHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCcceEEEcCccccccCCCccccccCcH-----HHHHHHHhh-ccccccc--c-hHHHHHHHHHHHHHhcch
Confidence             1111222 699999999999988887 66666664     566666544 3333222  1 222223344444445677


Q ss_pred             HHHHHHHHHHHHHHHHHHH----CCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCC----CC--CC
Q 010008          365 VYQNKVVSNCRALASRLVE----LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPG----DK--SA  434 (520)
Q Consensus       365 ~~~~~i~~na~~l~~~L~~----~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg----~~--~~  434 (520)
                      +..++..++++++.+.|++    .|+++..... ...+.+.+   ..+..++...|.+.||.......|.    ..  ..
T Consensus       330 ~~~~~~~~~a~~l~~~L~~l~~~~g~~ll~~~~-~~~~~~~~---~~~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~  405 (434)
T d2z67a1         330 ELVKNQKNSKKLLDELLNDLSKKTGGKFLDVES-PIASCISV---NSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGT  405 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCCC-SSEEEEEC---SSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSC
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhcCceecCCCC-Cceeeeec---CCCHHHHHHHHHHcCCeeeehhhhccccCeeeecc
Confidence            7888888899999888876    4777665321 12222222   3467788888999998643211111    11  12


Q ss_pred             CCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          435 LVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       435 ~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      ....++|+...    .+.|++|++++.+.|++
T Consensus       406 ~~~~~l~~~~s----~~~T~edID~~i~~L~k  433 (434)
T d2z67a1         406 YTHDYIVMNAA----IGVRTEDIVNSVSKLEK  433 (434)
T ss_dssp             CSCCEEEEECC----TTCCHHHHHHHHHHHHT
T ss_pred             cCCCeEEEecC----CCCCHHHHHHHHHHHhc
Confidence            23467998754    45679999999998875

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.2e-19  Score=189.11  Aligned_cols=315  Identities=7%  Similarity=0.007  Sum_probs=195.7

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHHHHHHHhh---CCCCCEEEEcCCCCCccccccccccccccccc
Q 010008          136 YIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAI---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT  211 (520)
Q Consensus       136 ~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~~~~l~al---l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~  211 (520)
                      ....+|....+++++++|.+...-  -+.++.|+ .++.+++.++   ..+++.|+++...|.+..        +.+.+.
T Consensus        91 ~~~~le~~~~~~~~~l~g~~~~~~--~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~--------~a~~~~  160 (445)
T d3bc8a1          91 LLNKITNSLVLNVIKLAGVHSVAS--CFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF--------KSMVTA  160 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTTCCE--EEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH--------HHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCCCcccC--ccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHH--------HHHHHc
Confidence            346788878889999999986432  23345555 4555555554   467789999887664432        245566


Q ss_pred             cceEEEEEcccCCCCCCCCHHHHHHHhhhc---CCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccc
Q 010008          212 SIYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAA  286 (520)
Q Consensus       212 g~~~~~v~~~~d~~~~~iD~d~le~~i~~~---~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~  286 (520)
                      |.....+....+.+++.+|+++|++++++.   ++.+|++..++++.  ..|+++|+++|+++|++|++|+||..++.+.
T Consensus       161 g~~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~  240 (445)
T d3bc8a1         161 GFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKC  240 (445)
T ss_dssp             TCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHH
T ss_pred             CCeeEEEEeeccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhc
Confidence            764333332233457899999999998753   45677777766543  7799999999999999999999987665432


Q ss_pred             cccC---CCCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCch
Q 010008          287 SVVA---DPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPE  362 (520)
Q Consensus       287 ~~~~---~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~  362 (520)
                      ....   ..+.++|++++|+||++.+|.| |++++++.     ++.+.+.........+++.....+    ++..+...+
T Consensus       241 ~~~~~~~~~~~~vd~~~~s~hK~~~~p~g~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~~  311 (445)
T d3bc8a1         241 MHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNE-----PFIQDISKMYPGRASASPSLDVLI----TLLSLGCSG  311 (445)
T ss_dssp             HHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCH-----HHHHHHHHHSCSCBCSHHHHHHHH----HHHHHHHHH
T ss_pred             cccchhccCcCCcceEEecCccccccCCCCceeeeCCh-----HHHHHHHHHHhhcccCcchHHHHH----HHHHHhhhc
Confidence            2111   1123589999999999998887 56666653     555555543222222333333332    333333345


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH----CCCEEecCCCCCeeEEEEecC----CCCCHHHHHHHHhhcCeEEcCCCCCC----
Q 010008          363 FKVYQNKVVSNCRALASRLVE----LGYKLVSGGSDNHLVLVDLRP----MGIDGARVEKILDMASITLNKNSVPG----  430 (520)
Q Consensus       363 ~~~~~~~i~~na~~l~~~L~~----~G~~v~~~gt~~~~~~vd~~~----~g~~~~~~~~~L~~~gI~v~~~~~Pg----  430 (520)
                      +....++...+++++.+.|.+    .|..+...........+.+..    ...+..++...|.+.||.......++    
T Consensus       312 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~  391 (445)
T d3bc8a1         312 YRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQT  391 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEE
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccccCCCCHHHHHHHHHHcCCCcceeeccccccc
Confidence            566677777788888877765    366554422122333333321    12233456667777777422111111    


Q ss_pred             ----------C-CCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHHHH
Q 010008          431 ----------D-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLE  473 (520)
Q Consensus       431 ----------~-~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~~~  473 (520)
                                . .......+||++..    .+.+++|++++++.|+++++...+
T Consensus       392 i~~~~~~~~g~~~~~~~~~~i~i~~~----~~~T~eDID~~v~~L~kilk~~rk  441 (445)
T d3bc8a1         392 VSGHTFRGFMSHADNYPCAYLNAAAA----IGMKMQDVDLFIKRLDKCLNIVRK  441 (445)
T ss_dssp             ETTEEEETTTTTSSCCSSCEEEEECC----TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhcCCCCccCCCCeEEEeCc----CCCCHHHHHHHHHHHHHHHHHHHh
Confidence                      0 01122356888754    456799999999999999987643

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.82  E-value=7.2e-19  Score=173.75  Aligned_cols=318  Identities=13%  Similarity=0.054  Sum_probs=190.7

Q ss_pred             cCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHH
Q 010008          100 ASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT  177 (520)
Q Consensus       100 asen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~  177 (520)
                      +|+|+  ++|+|++||.....+.    ..+   |+.++..++    ++++++++||.+.+    .+.+.||++||..++.
T Consensus         8 ~s~n~~g~~P~v~~A~~~a~~~~----~~~---~~~~~~~~~----l~~~la~~~g~~~~----v~f~~sGt~An~~a~~   72 (345)
T d1v72a1           8 SSDNIAGASPEVAQALVKHSSGQ----AGP---YGTDELTAQ----VKRKFCEIFERDVE----VFLVPTGTAANALCLS   72 (345)
T ss_dssp             SCGGGCCCCHHHHHHHHHTTSSC----CCS---TTCSHHHHH----HHHHHHHHHTSCCE----EEEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHhccC----ccc---cCCCHHHHH----HHHHHHHHHCCCcE----EEECCchHHHHHHHHH
Confidence            47876  5899999997653221    121   344454444    45889999998763    3556889999999999


Q ss_pred             hhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc-----CCcEE--EEcC
Q 010008          178 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLI--IAGA  250 (520)
Q Consensus       178 all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~-----~pklI--i~~~  250 (520)
                      +++.+++.+++....|..|...+.     .....+..+..+.  .+ ..+.+|++.+++.+...     .+..+  ..+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  144 (345)
T d1v72a1          73 AMTPPWGNIYCHPASHINNDECGA-----PEFFSNGAKLMTV--DG-PAAKLDIVRLRERTREKVGDVHTTQPACVSITQ  144 (345)
T ss_dssp             TSCCTTEEEEECTTSHHHHSSTTH-----HHHHTTSCEEEEC--CC-GGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEES
T ss_pred             HHHhcCCccccccccceeeechhh-----HHHhcCccccccc--cc-ccccccHHHhhhhhcccccccccccceeeeeec
Confidence            999999999988776655433221     1122333222222  22 34689999999988752     23333  2323


Q ss_pred             CCCCC----CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC----cccEEEeccCcccCCCCceEEEeeCCCc
Q 010008          251 SAYPR----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSLRGPRGGMIFFKKDPV  322 (520)
Q Consensus       251 s~~p~----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~----~aDiv~~S~hK~l~GprgG~I~~~~~~~  322 (520)
                      .+...    ..+++++.++|+++|+++++|++|..+............    ..+.++.+.+|...+.. +.+.....  
T Consensus       145 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--  221 (345)
T d1v72a1         145 ATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAA-EAIVLFNT--  221 (345)
T ss_dssp             SCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSC-EEEEESSG--
T ss_pred             cccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccccccc-cccccchh--
Confidence            22222    335788889999999999999998765443322211111    34466666666543333 33333332  


Q ss_pred             chhhHHH-hhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecCCCCCeeEEE
Q 010008          323 LGVELES-AINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLVLV  400 (520)
Q Consensus       323 ~~~~l~~-~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~gt~~~~~~v  400 (520)
                         .... ......+.+....+..  . +.+.+........+.....+...+.+.+.+.|.+ .|+.+..+ +.++++++
T Consensus       222 ---~~~~~~~~~~~~~~~~~~~~~--~-aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p-~~~niv~~  294 (345)
T d1v72a1         222 ---SLATEMSYRRKRAGHLSSKMR--F-LSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGG-TEANILFC  294 (345)
T ss_dssp             ---GGHHHHHHHHHHTTCCCSSTH--H-HHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESC-CCSSEEEE
T ss_pred             ---hhhhhccccccccccccchhh--H-HhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHhcCCcEeccC-CCccEEEE
Confidence               1111 1111112221122222  2 2222333344445566677777778888888877 47777654 45677777


Q ss_pred             EecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          401 DLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       401 d~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                      ++.      ..+.+.|.+.||.+..+       +..++.|||+++..|    |++|++++++.|+++
T Consensus       295 ~~~------~~~~~~L~~~gi~v~~~-------~~~~~~lR~~~~~~~----T~edid~~le~lr~a  344 (345)
T d1v72a1         295 RLD------SAMIDALLKAGFGFYHD-------RWGPNVVRFVTSFAT----TAEDVDHLLNQVRLA  344 (345)
T ss_dssp             EEC------HHHHHHHHHTTCBCBCS-------SSSTTEEEEECCTTC----CHHHHHHHHHHHHHT
T ss_pred             EcC------HHHHHHHHHcCCCcccc-------CCCCCEEEEECCCCC----CHHHHHHHHHHHHHh
Confidence            763      34556677889987432       234679999877555    489999999998864

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.82  E-value=3.7e-19  Score=181.23  Aligned_cols=323  Identities=14%  Similarity=0.068  Sum_probs=213.0

Q ss_pred             CCCCChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-
Q 010008          101 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-  179 (520)
Q Consensus       101 sen~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al-  179 (520)
                      +++.+..+-++++...|.+.+         +..-++++++|    +.++++||.++     .|.++|||.|+.+++.++ 
T Consensus         6 ~~p~~~~~~~~~v~~~l~~~~---------~~~G~~v~~fE----~~~~~~~g~k~-----ai~~~Sgt~Al~~al~al~   67 (371)
T d2fnua1           6 SEPCLDKEDKKAVLEVLNSKQ---------LTQGKRSLLFE----EALCEFLGVKH-----ALVFNSATSALLTLYRNFS   67 (371)
T ss_dssp             CCCCCCHHHHHHHHHHHTSSC---------CSSSHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHSS
T ss_pred             CCCCCCHHHHHHHHHHHcCCC---------ccCCHHHHHHH----HHHHHHHCcCe-----EEEEecHHHHHHHHHHHhc
Confidence            444456666777777775443         22236788998    67899999987     366799999999999998 


Q ss_pred             CCCCC--EEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCC
Q 010008          180 LKPHD--RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF  257 (520)
Q Consensus       180 l~pGD--~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~~~  257 (520)
                      +.+||  +|++++.++.+..        .++...|.  +++.+++++++ .++.+++++.+++ ++++|++. +.++...
T Consensus        68 ~~~~~~~eVi~p~~t~~a~~--------~ai~~~G~--~pv~vDi~~~~-~~~~~~~~~~~~~-~t~avi~v-h~~G~~~  134 (371)
T d2fnua1          68 EFSADRNEIITTPISFVATA--------NMLLESGY--TPVFAGIKNDG-NIDELALEKLINE-RTKAIVSV-DYAGKSV  134 (371)
T ss_dssp             CCCTTSCEEEECSSSCTHHH--------HHHHHTTC--EEEECCBCTTS-SBCGGGSGGGCCT-TEEEEEEE-CGGGCCC
T ss_pred             ccCCCCCeeecccccccccc--------eeeeccCc--ccccccccccc-cccchhhhhhccc-hhhccccc-ccccccc
Confidence            66665  8999887665432        13445665  89999998655 5666888888887 89988774 4455688


Q ss_pred             CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEecc--CcccCCCCceEEEeeCCCcchhhHHHhhcccC
Q 010008          258 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTT--HKSLRGPRGGMIFFKKDPVLGVELESAINNAV  335 (520)
Q Consensus       258 d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~--hK~l~GprgG~I~~~~~~~~~~~l~~~i~~~~  335 (520)
                      |+++|.++|+++|++||.|+||+.|....+.....  ..|+.++|+  .|.+.+..||+|+++++     ++.+++....
T Consensus       135 ~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~G~--~g~~~~~Sf~~~K~l~~g~GG~i~t~~~-----~~~~~~~~~~  207 (371)
T d2fnua1         135 EVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGG--FALASVFSFHAIKPITTAEGGAVVTNDS-----ELHEKMKLFR  207 (371)
T ss_dssp             CHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTS--SSSEEEEECCTTSSSCCSSCEEEEESCH-----HHHHHHHHHT
T ss_pred             ccccccccccccchhhccchhhccCceeccccCCc--cccccccccccccccccccceEEEeech-----hhhhhccccc
Confidence            99999999999999999999999987665543322  345555555  59998888999999985     5555543221


Q ss_pred             C---------------CCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEEecC--C--CCC
Q 010008          336 F---------------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKLVSG--G--SDN  395 (520)
Q Consensus       336 ~---------------p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v~~~--g--t~~  395 (520)
                      .               .|...-+ ....||+  ++.++  ..+++..++..++++.+.+.|.+. ++.+..+  +  ...
T Consensus       208 ~~g~~~~~~~~~~~~~~G~n~r~-sel~Aai--gl~qL--~~l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~  282 (371)
T d2fnua1         208 SHGMLKKDFFEGEVKSIGHNFRL-NEIQSAL--GLSQL--KKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSN  282 (371)
T ss_dssp             BTTEEESSSSCEEESSCCCBCCC-CHHHHHH--HHHHH--TTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCC
T ss_pred             ccccccccccccccccccccccc-cchhhhh--hhhhh--hhccchhhhhhhhhhhhccccccccccccccccccccccc
Confidence            1               1111111 1122332  34444  245677777788888888888763 4454431  1  122


Q ss_pred             eeEEEEecCC-CCCHHHHHHHHhhcCeEEcCCCCCCCC----------CCC------CCCEEEEccCCccccCCCHHHHH
Q 010008          396 HLVLVDLRPM-GIDGARVEKILDMASITLNKNSVPGDK----------SAL------VPGGIRIGSPAMTTRGFSEKEFV  458 (520)
Q Consensus       396 ~~~~vd~~~~-g~~~~~~~~~L~~~gI~v~~~~~Pg~~----------~~~------~~~giRig~~~~tt~g~~~~d~~  458 (520)
                      +.+.+-+... ..+.+++.+.|.+.||.++..+.|-+.          ..+      ....|.|.+.    .+++++|++
T Consensus       283 ~~~~i~~~~~~~~~r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~----~~lt~~di~  358 (371)
T d2fnua1         283 HLYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCH----ANLNLESVQ  358 (371)
T ss_dssp             SCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCC----TTCCHHHHH
T ss_pred             ccccccccccchhHHHHHHHHHHHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCC----CCCCHHHHH
Confidence            2222222211 123467889999999999876555221          110      0124555332    357899999


Q ss_pred             HHHHHHHHHHHH
Q 010008          459 AIADFIHEGVEI  470 (520)
Q Consensus       459 ~la~~i~~~l~~  470 (520)
                      ++++.|.+.++.
T Consensus       359 ~I~~~i~~~~~~  370 (371)
T d2fnua1         359 NIAHSVLKTFES  370 (371)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            999999988764

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=7.2e-20  Score=187.78  Aligned_cols=351  Identities=16%  Similarity=0.194  Sum_probs=207.3

Q ss_pred             ccccChH-HHHHHHHHHHHh-hccceEecC----CC---CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHH
Q 010008           74 LGEADPE-VCEIITKEKERQ-FKSLELIAS----EN---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLC  144 (520)
Q Consensus        74 l~~~d~~-~~~~~~~e~~~~-~~~i~Lias----en---~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a  144 (520)
                      |+...++ +++++.+-++.- .+.|+|..+    ++   ++++.|++|+...+.+..+++|..   ..|.   .++.+.+
T Consensus         5 ~~~~~~d~i~~l~~~~~~d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p---~~G~---~~lr~ai   78 (394)
T d2ay1a_           5 LKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAG---LSGE---PEFQKAM   78 (394)
T ss_dssp             CCCCCCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCC---SSCC---HHHHHHH
T ss_pred             CCCCCCChHHHHHHHHhCCCCCCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCC---CCCC---HHHHHHH
Confidence            4444444 666654433211 256899876    22   457899999988877655556643   2233   3555555


Q ss_pred             HHHHHHHcCCCCCCCceeeecCChHHH--HHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEccc
Q 010008          145 QKRALAAFNLDENKWGVNVQPLSGSPA--NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL  222 (520)
Q Consensus       145 ~~~~~~lfg~~~~~~~~~V~~~sGs~A--~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~  222 (520)
                      .+++.+..+.... . ..+++++|+.+  +.+.+..+++|||+|++++|.++.|..        .+...|.  +++.++.
T Consensus        79 a~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~--------~~~~~g~--~~v~~~~  146 (394)
T d2ay1a_          79 GELILGDGLKSET-T-ATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVS--------IMNFMGL--PVQTYRY  146 (394)
T ss_dssp             HHHHHGGGCCGGG-E-EEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHH--------HHHHHTC--CEEEEEC
T ss_pred             HHHHhcccccccc-c-cceeccCchHHHHHHHHHhhhcCCceEEEEecccccchHH--------HHHHcCC--EEEEecc
Confidence            5666555444321 1 34555666544  445556678999999999998765532        3344565  4555554


Q ss_pred             CC-CCCCCCHHHHHHHhhhc--CCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCC-
Q 010008          223 DE-STGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-  293 (520)
Q Consensus       223 d~-~~~~iD~d~le~~i~~~--~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~-  293 (520)
                      .. +++..+.+.+++.....  ++++++++.++||+  .+   .+++|.++|+++++++++|++ |.++.+.+....++ 
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~-Y~~l~~~~~~~~~~~  225 (394)
T d2ay1a_         147 FDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLA-YQGFGDGLEEDAAGT  225 (394)
T ss_dssp             EETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEEC-CTTSSSCHHHHHHHH
T ss_pred             cchhcccccchhHHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEecc-chhhcccccccchhh
Confidence            32 34566777766655432  45677778899997  44   478899999999999999999 56776554221111 


Q ss_pred             -----Ccc-cEEEeccCccc--CCCCceEEEeeCCCcc-hhhHHHhhcccCCCCCCCCChHHH-HHHHHHH---HHHhcC
Q 010008          294 -----KYC-DVVTTTTHKSL--RGPRGGMIFFKKDPVL-GVELESAINNAVFPGLQGGPHNHT-IGGLAVC---LKHAQS  360 (520)
Q Consensus       294 -----~~a-Div~~S~hK~l--~GprgG~I~~~~~~~~-~~~l~~~i~~~~~p~~~g~p~~~~-iaala~a---l~~~~~  360 (520)
                           ... -+++.|++|++  .|+|.|++.++..... .......+...........+...+ +++....   +.....
T Consensus       226 ~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  305 (394)
T d2ay1a_         226 RLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWM  305 (394)
T ss_dssp             HHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHH
T ss_pred             hhhhhhcccccccccccccccCCcccccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHH
Confidence                 011 25667888875  7899999999874210 001111111111111122222222 1111111   111112


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHCC----CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCC
Q 010008          361 PEFKVYQNKVVSNCRALASRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALV  436 (520)
Q Consensus       361 ~~~~~~~~~i~~na~~l~~~L~~~G----~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~  436 (520)
                      ..++.+.+++.++++.|.+.|.+.|    +..+.+ ....+.|+     +++.+.++++++++||.+    +||      
T Consensus       306 ~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~-~~G~F~~~-----~ls~~~~~~L~~~~~V~~----~~g------  369 (394)
T d2ay1a_         306 AELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAE-HRGMFSRL-----GATPEQVKRIKEEFGIYM----VGD------  369 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHH-CCSSEEEC-----CCCHHHHHHHHHHHCEEC----CTT------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCceeeECC-CceeEEec-----CcCHHHHHHHHHhCCEEe----cCC------
Confidence            3346677788888899999998743    232222 12344454     345677888889999987    443      


Q ss_pred             CCEEEEccCCccccCCCHHHHHHHHHHHHHH
Q 010008          437 PGGIRIGSPAMTTRGFSEKEFVAIADFIHEG  467 (520)
Q Consensus       437 ~~giRig~~~~tt~g~~~~d~~~la~~i~~~  467 (520)
                         .||++..     ++++++++++++|+++
T Consensus       370 ---~Ri~~a~-----l~~~~i~~l~~ai~~v  392 (394)
T d2ay1a_         370 ---SRINIAG-----LNDNTIPILARAIIEV  392 (394)
T ss_dssp             ---CEEEGGG-----CCTTTHHHHHHHHHHH
T ss_pred             ---CEEEecC-----CCHHHHHHHHHHHHHh
Confidence               4998754     5568999999999875

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=9.1e-21  Score=194.98  Aligned_cols=332  Identities=15%  Similarity=0.139  Sum_probs=194.4

Q ss_pred             ccceEecC----CC---CChHHHHHHHhhhhhccC-CCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCC--CCCCceee
Q 010008           94 KSLELIAS----EN---FTSRAVMEAVGSCLTNKY-SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNV  163 (520)
Q Consensus        94 ~~i~Lias----en---~~~~~V~ea~~s~l~~~y-~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~--~~~~~~~V  163 (520)
                      +.|+|..+    ++   ++.+.|++|......+.- ..+|      +......++.+...+++.+..+..  .+.+ +.+
T Consensus        27 ~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y------~p~~G~~~lR~aia~~~~~~~~~~~~~~~i-~~~   99 (397)
T d3tata_          27 DKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLY------LPMEGLNCYRHAIAPLLFGADHPVLKQQRV-ATI   99 (397)
T ss_dssp             SCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCC------CCTTCCHHHHHHHHHHHTCSSCHHHHTTCE-EEC
T ss_pred             CcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCC------CCcccCHHHHHHHHHHHhhccCCcCCcCcE-EEe
Confidence            45888765    22   456899999765443321 2233      333334566655556655555543  3321 111


Q ss_pred             ecCChH--HHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC-CCCCCHHHHHHHhhh
Q 010008          164 QPLSGS--PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAIL  240 (520)
Q Consensus       164 ~~~sGs--~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~-~~~iD~d~le~~i~~  240 (520)
                      +..+++  .++.+++.++++|||+|++++|.+.++..        .+...|.  +++.++++.+ ++.+|.+++.+....
T Consensus       100 ~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~--------~~~~~G~--~~~~v~~~~~~~~~~~~~~~~~~~~~  169 (397)
T d3tata_         100 QTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVA--------IFAGAGF--EVSTYPWYDEATNGVRFNDLLATLKT  169 (397)
T ss_dssp             CBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHH--------HHHTTTC--CCEECCCCCTTTSSCCHHHHHHHHTT
T ss_pred             cCchhHHHHHHHHHHhhhcCCCCcceecccCccccHH--------HHHHcCC--EEEEEecchhhccccchHHHHHHhhh
Confidence            122222  24556667778999999999998876642        3345565  6677777644 367888888776553


Q ss_pred             c--CCcEEEEcCCCCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccC-CCC----Ccc--cEEEeccCcc
Q 010008          241 F--RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVA-DPF----KYC--DVVTTTTHKS  306 (520)
Q Consensus       241 ~--~pklIi~~~s~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~-~p~----~~a--Div~~S~hK~  306 (520)
                      .  ++++++++.++||+  ..   .+++|.++|+++++++++|++ |.++.+.+... ...    ...  -+++.|++|+
T Consensus       170 ~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~-Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~  248 (397)
T d3tata_         170 LPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIA-YQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKI  248 (397)
T ss_dssp             CCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBS-CTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHH
T ss_pred             cccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehh-hhhhccCCcccchhhhhhhhcCCceEEEecCccc
Confidence            2  56788888999997  44   467888999999999999998 56666543211 111    011  2778999997


Q ss_pred             c--CCCCceEEEeeCCCcc-hhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHH--hc---CchhHHHHHHHHHHHHHHH
Q 010008          307 L--RGPRGGMIFFKKDPVL-GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH--AQ---SPEFKVYQNKVVSNCRALA  378 (520)
Q Consensus       307 l--~GprgG~I~~~~~~~~-~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~--~~---~~~~~~~~~~i~~na~~l~  378 (520)
                      +  +|+|.||++++..... .................+.+...+.++ +..+..  ..   ....+.+.+++.++++.+.
T Consensus       249 ~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~  327 (397)
T d3tata_         249 FSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVV-AAVLNDEALKASWLAEVEEMRTRILAMRQELV  327 (397)
T ss_dssp             HTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHH-HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4  7999999999875211 111111222222222233444433322 212210  00   1122344555555666666


Q ss_pred             HHHHHCC----CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCH
Q 010008          379 SRLVELG----YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSE  454 (520)
Q Consensus       379 ~~L~~~G----~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~  454 (520)
                      +.|...+    +..+.+. ...++|+     +++.+.++++++++||.+    +||         .||+...     +++
T Consensus       328 ~~L~~~~~~~~~~~~~~~-~G~F~~~-----~ls~e~~~~L~~e~~V~l----~~g---------~Ri~~a~-----~~~  383 (397)
T d3tata_         328 KVLSTEMPERNFDYLLNQ-RGMFSYT-----GLSAAQVDRLREEFGVYL----IAS---------GRMCVAG-----LNT  383 (397)
T ss_dssp             HTTTTTCTTSCTTHHHHC-CSSBCCC-----CCCHHHHHHHTTTTCEEC----CSS---------SCCBTTS-----CCT
T ss_pred             HHHHHhCCCCceEEEcCC-CceEEec-----CcCHHHHHHHHHhCCEEe----CCC---------CEEEecc-----CCH
Confidence            6665532    3322221 2234443     345677888889999987    443         3888754     446


Q ss_pred             HHHHHHHHHHHHHH
Q 010008          455 KEFVAIADFIHEGV  468 (520)
Q Consensus       455 ~d~~~la~~i~~~l  468 (520)
                      +++++++++|++++
T Consensus       384 ~~i~~~~~ai~~v~  397 (397)
T d3tata_         384 ANVQRVAKAFAAVM  397 (397)
T ss_dssp             TTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhC
Confidence            89999999998763

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.81  E-value=3.1e-18  Score=173.93  Aligned_cols=290  Identities=16%  Similarity=0.182  Sum_probs=190.6

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      |++..+.+|    ++++++.|.+.     .+...||..|+.++++++++|||+|++.+..|++......    .-....|
T Consensus        61 ~nPT~~~LE----~~la~LEgg~~-----a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~----~~l~~~G  127 (397)
T d1y4ia1          61 GNPTTDALE----KKLAVLERGEA-----GLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLS----HSMPKFG  127 (397)
T ss_dssp             SCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHH----THHHHTT
T ss_pred             CCHHHHHHH----HHHHHHhCCcc-----ceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhh----cccCCCc
Confidence            788889988    67889999875     3556899999999999999999999999988876532211    1112234


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .  ++..++.      -|.+.+++++++ +||+|++..|.||+  +.|+++|+++|+++|+++++|.+...     ....
T Consensus       128 i--~~~~vd~------~d~~~~~~~i~~-~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~at-----P~~~  193 (397)
T d1y4ia1         128 I--NVRFVDA------GKPEEIRAAMRP-ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS-----PYCQ  193 (397)
T ss_dssp             C--EEEEECT------TSHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTC-----TTTC
T ss_pred             e--EeeccCC------CCHHHHHHhcCC-CCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCcccC-----cccC
Confidence            4  5555432      378999999988 89999999999998  78999999999999999999998433     2334


Q ss_pred             CCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  366 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~  366 (520)
                      .|+. |+|||+.|++|++.|-.   +|.+++++      +...+++........|+.....-+  ...++.+.  -+.-+
T Consensus       194 ~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~------~~~~~~r~~~~~~~~G~~l~p~~a--~l~~rgl~--TL~lR  263 (397)
T d1y4ia1         194 QPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQ------EFIDQARFVGLKDITGGCMSPFNA--WLTLRGVK--TLGIR  263 (397)
T ss_dssp             CGGGGTCSEEEEETTTTTTCSSCCCCEEEEECH------HHHHHHHHTHHHHTTCCCCCHHHH--HHHHHHHT--THHHH
T ss_pred             cchhcCCCEEEEehhhhcCCCcceeeeccCCCH------HHHHHHHHHHHHhCcCCcCCHHHH--HHHHcCcC--cHHHH
Confidence            6676 89999999999997743   48888887      444332211111111221111111  12233332  24567


Q ss_pred             HHHHHHHHHHHHHHHHHC-CCE-EecCCC---------------CCeeEEEEecCCCCCHHHHHHHHhhcCeE---EcCC
Q 010008          367 QNKVVSNCRALASRLVEL-GYK-LVSGGS---------------DNHLVLVDLRPMGIDGARVEKILDMASIT---LNKN  426 (520)
Q Consensus       367 ~~~i~~na~~l~~~L~~~-G~~-v~~~gt---------------~~~~~~vd~~~~g~~~~~~~~~L~~~gI~---v~~~  426 (520)
                      +++..+|+..+++.|++. .++ |..++-               ...++.+++..   +.+.+.++++...+.   ++.+
T Consensus       264 m~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~---~~~~~~~f~~~L~l~~~a~SlG  340 (397)
T d1y4ia1         264 MERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG---GLEAGRRMINSVELCLLAVSLG  340 (397)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETT---HHHHHHHHHHTCSSSEECSCCS
T ss_pred             HHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecC---CHHHHHHHHHcCCccceeeccC
Confidence            889999999999999884 443 333321               12344555431   224455666654433   2222


Q ss_pred             C------CCCCC------------CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          427 S------VPGDK------------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       427 ~------~Pg~~------------~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      .      .|...            ....++.||++..        -||.+.+.+-|+++++.
T Consensus       341 g~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvG--------lEd~~DLi~Dl~~AL~~  394 (397)
T d1y4ia1         341 DTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVG--------LEDPEDIINDLEHAIRK  394 (397)
T ss_dssp             CSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECC--------SSCHHHHHHHHHHHHHH
T ss_pred             cccceeeCccccccccCCHHHHHHcCCCcCEEEEEec--------cCCHHHHHHHHHHHHHH
Confidence            1      12110            0123467899865        37788888888887764

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.81  E-value=1e-18  Score=177.97  Aligned_cols=298  Identities=14%  Similarity=0.103  Sum_probs=190.9

Q ss_pred             hhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh-CCCCCEEEEcCCCCCccccccccccccccccccc
Q 010008          135 EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI  213 (520)
Q Consensus       135 ~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al-l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~  213 (520)
                      ++++++|    +.+++.||..+     .|.+.|||.|+++++.++ +++||+|++++.++.+...        .+...|.
T Consensus        21 ~~~~~fE----~~~~~~~~~~~-----~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~~--------~~~~~g~   83 (374)
T d1o69a_          21 EFVNRFE----QSVKDYSKSEN-----ALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVA--------PICYLKA   83 (374)
T ss_dssp             HHHHHHH----HHHHHHHCCSE-----EEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTH--------HHHHTTC
T ss_pred             HHHHHHH----HHHHHHHCcCe-----EEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhHH--------HHhhccc
Confidence            5688898    67889999986     366799999999999999 9999999999987655432        3444565


Q ss_pred             eEEEEEcccCCCCCCCCHHHHH--HHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCC
Q 010008          214 YFESMPYRLDESTGLVDYDMLE--KTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD  291 (520)
Q Consensus       214 ~~~~v~~~~d~~~~~iD~d~le--~~i~~~~pklIi~~~s~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~  291 (520)
                        .++.+++++.....+.+..+  ..++. ++++|++. ..++...|+++|.++|+++|++||.|+||+.|....+....
T Consensus        84 --~pv~~Di~~~~~~~~~~~~~~~~~~~~-~~~aii~~-~~~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G  159 (374)
T d1o69a_          84 --KPVFIDCDETYNIDVDLLKLAIKECEK-KPKALILT-HLYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALG  159 (374)
T ss_dssp             --EEEEECBCTTSSBCHHHHHHHHHHCSS-CCCEEEEE-CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETT
T ss_pred             --eeEecccccccccccccccccchhccc-cccccccc-ccccchhhhHHHHHHhhccCcchhhhhhhhhcceECCeecC
Confidence              88888888555555554433  44444 78888774 33455789999999999999999999999998876554322


Q ss_pred             CCCcccEEEeccC--cccCCCCceEEEeeCCCcchhhHHHhhcccCC-------------CCCCCCChHHHHHHHHHHHH
Q 010008          292 PFKYCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAINNAVF-------------PGLQGGPHNHTIGGLAVCLK  356 (520)
Q Consensus       292 p~~~aDiv~~S~h--K~l~GprgG~I~~~~~~~~~~~l~~~i~~~~~-------------p~~~g~p~~~~iaala~al~  356 (520)
                      .  ..|+.++|+|  |.+....||+++++++     ++.+++.....             +|.-. ......||+.  +.
T Consensus       160 ~--~gd~~~fSf~~~K~l~tgeGG~i~tnn~-----~~~~~~~~~~~~g~~~~~~~~~~~~G~N~-rm~ei~Aaig--~~  229 (374)
T d1o69a_         160 T--FGEFGVYSYNGNKIITTSGGGMLIGKNK-----EKIEKARFYSTQARENCLHYEHLDYGYNY-RLSNVLGAIG--VA  229 (374)
T ss_dssp             S--SSSEEEEECCTTSSSCCSSCEEEEESCH-----HHHHHHHHHTBTCCCSSSSCCCSSCCCBC-BCCHHHHHHH--HH
T ss_pred             C--CCceEEEeccCccccccccceeehhhhH-----HHHHhhccccccccccccccccccCCccc-cccchhhhhh--HH
Confidence            2  4688888887  8888778899999885     55544322111             11111 1122333332  33


Q ss_pred             HhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEec-CC--CCCee--EEEEecC--------------C----CCCHHHHH
Q 010008          357 HAQSPEFKVYQNKVVSNCRALASRLVELGYKLVS-GG--SDNHL--VLVDLRP--------------M----GIDGARVE  413 (520)
Q Consensus       357 ~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~-~g--t~~~~--~~vd~~~--------------~----g~~~~~~~  413 (520)
                      ++  ..+.+..++..++++.+.+.|.+....+.. ..  +..++  .+++...              .    .-+.+.+.
T Consensus       230 qL--~~l~~~i~~r~~i~~~y~~~L~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~  307 (374)
T d1o69a_         230 QM--EVLEQRVLKKREIYEWYKEFLGEYFSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLI  307 (374)
T ss_dssp             HH--TTHHHHHHHHHHHHHHHHHHHTTTEECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHH
T ss_pred             HH--hhhhhhcchhHHHHHHHHhhccccccccccccCCCCChhheeeeeccccccccccccccccchhhccchhhHHHHH
Confidence            33  244566677777788888888653111111 11  11121  1221110              0    01245688


Q ss_pred             HHHhhcCeEEcCCCCCCCC-CCCC--------------CCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          414 KILDMASITLNKNSVPGDK-SALV--------------PGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       414 ~~L~~~gI~v~~~~~Pg~~-~~~~--------------~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +.|.+.||.++..+.|-+. ..+.              ...|.+.+.    .+++++|++++++.|.++++
T Consensus       308 ~~L~~~gI~~r~~y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~----~~lt~~di~~I~~~I~~~lk  374 (374)
T d1o69a_         308 EDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSG----TAMSKDDVYEISKLILKSIK  374 (374)
T ss_dssp             HHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCC----TTCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHCCCCEEEeCcchhhChhhhcCCCCCCHHHHHHHhCEEECcCC----CCCCHHHHHHHHHHHHHHHC
Confidence            9999999998765544322 1111              123444322    46889999999999988763

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.80  E-value=2e-18  Score=175.28  Aligned_cols=290  Identities=15%  Similarity=0.205  Sum_probs=190.5

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      |++..+.+|    ++++++.|.+.     .+...||..|+.+++.+++++||+|++.+..||+.....    ..-....|
T Consensus        57 ~nPT~~~LE----~~la~LEg~~~-----a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~----~~~~~~~G  123 (392)
T d1gc0a_          57 SNPTLNLLE----ARMASLEGGEA-----GLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFL----HHGIGEFG  123 (392)
T ss_dssp             CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHH----HHTGGGGT
T ss_pred             CChHHHHHH----HHHHHHhCCcc-----eeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhh----hhhhccCC
Confidence            678888888    67889999875     355689999999999999999999999999888764221    11122234


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .  ++..++      .-|++++++++++ ++|+|++..|+||+  +.|+++|++||+++|+++++|.+....+.     .
T Consensus       124 i--~~~~~d------~~d~~~~~~ai~~-~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~atP~~-----~  189 (392)
T d1gc0a_         124 V--KLRHVD------MADLQALEAAMTP-ATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYL-----Q  189 (392)
T ss_dssp             C--EEEEEC------TTCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHH-----C
T ss_pred             c--ccccCC------ccCHHHHHHhCCC-CCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCccCccc-----c
Confidence            4  444533      2478999999998 89999999999998  88999999999999999999998654433     4


Q ss_pred             CCCC-cccEEEeccCcccCCC---CceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  366 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gp---rgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~  366 (520)
                      .|++ |+|||+.|++|++.|-   -+|.+++++      +...+++........|+.....-+  ...++.+.  -+..+
T Consensus       190 ~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~------~~~~~~r~~~~~~~~G~~~~p~da--~ll~rgl~--TL~lR  259 (392)
T d1gc0a_         190 RPLELGADLVVHSATKYLSGHGDITAGIVVGSQ------ALVDRIRLQGLKDMTGAVLSPHDA--ALLMRGIK--TLNLR  259 (392)
T ss_dssp             CGGGGTCSEEEEETTTTTTCSSSCCCEEEEECH------HHHHHHHHTHHHHHTCCCCCHHHH--HHHHHHHT--THHHH
T ss_pred             ChHHhCCCEEEEecceeecCCcccccccccchh------HHHHHHHHHHHHHccCCcCChhhH--HHHHhccc--cHHHH
Confidence            6777 8999999999999774   348888887      444433211111011221111111  12234332  35677


Q ss_pred             HHHHHHHHHHHHHHHHHC-CCE-EecCCCC---------------CeeEEEEecCCCCCHHHHHHHHhhcCe---EEcCC
Q 010008          367 QNKVVSNCRALASRLVEL-GYK-LVSGGSD---------------NHLVLVDLRPMGIDGARVEKILDMASI---TLNKN  426 (520)
Q Consensus       367 ~~~i~~na~~l~~~L~~~-G~~-v~~~gt~---------------~~~~~vd~~~~g~~~~~~~~~L~~~gI---~v~~~  426 (520)
                      +++..+|+..+++.|++. .++ |..++-.               ..++.+++..   +.+.+.++++...+   .++.+
T Consensus       260 m~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~---~~~~~~~f~~~L~l~~~a~SlG  336 (392)
T d1gc0a_         260 MDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG---GIGAGRRFMNALQLFSRAVSLG  336 (392)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT---HHHHHHHHHHHCSSSEECSCCS
T ss_pred             HHHHHHHHHHHHHHHHhCCCccEEeeccccCCcccccccccccCCCcEEEEEEeC---CHHHHHHHHHhCCcceEeeccC
Confidence            899999999999999884 343 3322211               2234444431   22445566665544   22222


Q ss_pred             C------CCCCC--C----------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          427 S------VPGDK--S----------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       427 ~------~Pg~~--~----------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      .      .|-..  .          ...++-|||+..        -||.+.+.+-|.++++.
T Consensus       337 g~eSLi~~pa~~th~~~~~e~r~~~Gi~~~liRlSVG--------lEd~eDLi~Dl~~AL~a  390 (392)
T d1gc0a_         337 DAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVG--------LEDIDDLLADVQQALKA  390 (392)
T ss_dssp             CSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECC--------SSCHHHHHHHHHHHHHH
T ss_pred             CcChhhcCccccccccCCHHHHHHcCCCcCeEEEEee--------eCCHHHHHHHHHHHHHh
Confidence            1      01000  0          123467999864        37777778878777764

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=6.8e-17  Score=163.59  Aligned_cols=289  Identities=18%  Similarity=0.193  Sum_probs=190.9

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      |++....+|    ++++++-|.+.     -+...||..|+..++.+++++||+|++.+..|++......    .-....|
T Consensus        48 ~nPt~~~le----~~la~LEgg~~-----a~~~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~----~~~~~~g  114 (384)
T d1cs1a_          48 GNPTRDVVQ----RALAELEGGAG-----AVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFD----SLAKRGC  114 (384)
T ss_dssp             CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH----HHHTTTS
T ss_pred             CCHHHHHHH----HHHHHHhCCCc-----eEEecChHHHHHHHHhhcccccceecccccccchhhhhhh----hhhcccc
Confidence            688888888    68889999875     3566899999999999999999999999888876532111    1111123


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .  +...+  +    ..|.+++++.+.+ +||+|++..|+||+  ..|+++|+++|+++|+++++|.+....     ...
T Consensus       115 ~--~~~~~--d----~~d~~~~~~~~~~-~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP-----~~~  180 (384)
T d1cs1a_         115 Y--RVLFV--D----QGDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSP-----ALQ  180 (384)
T ss_dssp             C--EEEEE--C----TTCHHHHHHHHHT-CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCT-----TTC
T ss_pred             c--ccccc--c----CCCHHHHHhhccc-cccEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccccCc-----ccc
Confidence            2  33332  2    2578999999988 99999999999998  789999999999999999999985433     334


Q ss_pred             CCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccC-CCCCCCCChHHHHHHHHHHHHHhcCchhHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAV-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKV  365 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~-~p~~~g~p~~~~iaala~al~~~~~~~~~~  365 (520)
                      .|++ |+|||+.|++|++.|-.   +|.++.+++     ++.+++.... ..|...+|..    + ...++.+.  -+.-
T Consensus       181 ~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~-----~~~~~~~~~~~~~G~~~~p~~----a-~ll~rgL~--TL~l  248 (384)
T d1cs1a_         181 NPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDP-----DVVTELAWWANNIGVTGGAFD----S-YLLLRGLR--TLVP  248 (384)
T ss_dssp             CGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSH-----HHHHHHHHHHHHHTCBCCHHH----H-HHHHHHHT--THHH
T ss_pred             cccccCCCEEEEccccccccCCCcccccccCCch-----hhhhhhhhhhhhhhhcccccc----H-HHHhhccc--hhHH
Confidence            6676 89999999999997743   488888763     4444332211 1111222211    1 12234332  3567


Q ss_pred             HHHHHHHHHHHHHHHHHHC-CC-EEecCCCC---------------CeeEEEEecCCCCCHHHHHHHHhhcCeEE---cC
Q 010008          366 YQNKVVSNCRALASRLVEL-GY-KLVSGGSD---------------NHLVLVDLRPMGIDGARVEKILDMASITL---NK  425 (520)
Q Consensus       366 ~~~~i~~na~~l~~~L~~~-G~-~v~~~gt~---------------~~~~~vd~~~~g~~~~~~~~~L~~~gI~v---~~  425 (520)
                      ++++..+|+..+++.|++. .+ +|..++-.               ..++.+++..   +.+.+.++++...+..   +.
T Consensus       249 Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~---~~~~a~~f~~~L~l~~~a~Sl  325 (384)
T d1cs1a_         249 RMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG---DEQTLRRFLGGLSLFTLAESL  325 (384)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS---CHHHHHHHHHTCSSSEEBSCC
T ss_pred             HHHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecc---hHHHHHHHHHhCCcceecccc
Confidence            7899999999999999873 34 33333211               2244445432   3455667777655432   22


Q ss_pred             CC------CCCCC-----C-------CCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          426 NS------VPGDK-----S-------ALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       426 ~~------~Pg~~-----~-------~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      +.      .|...     .       ...++-||++..        -||.+.+.+-++++++..
T Consensus       326 Gg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvG--------lEd~eDLi~Dl~~AL~aa  381 (384)
T d1cs1a_         326 GGVESLISHAATMTHAGMAPEARAAAGISETLLRISTG--------IEDGEDLIADLENGFRAA  381 (384)
T ss_dssp             CSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECC--------SSCHHHHHHHHHHHHHHH
T ss_pred             CCccceeccccccccccCCHHHHHhcCCCcCeEEEEec--------cCCHHHHHHHHHHHHHHh
Confidence            11      01100     0       123456999865        378888888888887754

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.75  E-value=7.7e-17  Score=163.10  Aligned_cols=213  Identities=22%  Similarity=0.215  Sum_probs=151.9

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      |++..+.+|    ++++.+-|.+.     -+...||..|+. ++.+++++||+|++.+..|++......    ......|
T Consensus        47 ~nPt~~~le----~~la~LE~~~~-----a~~fsSGMaAis-all~ll~~Gd~vv~~~~~Yg~t~~l~~----~~~~~~g  112 (380)
T d1ibja_          47 GNPTRDALE----SLLAKLDKADR-----AFCFTSGMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLLS----QVVPRSG  112 (380)
T ss_dssp             CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHH-HHHTTSCTTCEEEEESSCCHHHHHHHH----HTSGGGT
T ss_pred             CChHHHHHH----HHHHHHcCCce-----EEehhhHHHHHH-HHHHhhCCCCEEEEEecccccccchhh----hhhcccc
Confidence            688888888    68899999875     255689999986 677899999999999998887642211    1112234


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .  +...++      ..|.+++++++++ ++|+|++..++||+  ..|+++|+++|+++|+++|+|.+....     ...
T Consensus       113 i--~~~~~d------~~~~~~~~~ai~~-~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP-----~~~  178 (380)
T d1ibja_         113 V--VVKRVN------TTKLDEVAAAIGP-QTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSP-----VLS  178 (380)
T ss_dssp             C--EEEEEC------TTSHHHHHHHCCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCT-----TTC
T ss_pred             c--cccccC------cchHHHHHHHhcc-CccEEEeccccccccccccHHHHHHHHHHcCCeEEeecccccc-----ccc
Confidence            3  444432      2478999999988 89999999999998  789999999999999999999985433     334


Q ss_pred             CCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  366 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~  366 (520)
                      .|++ |+|+|+.|++|++.|-.   +|.++.+++     ++.+++.....  ..|+.....-+  ...++.+.  -+..+
T Consensus       179 ~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~-----~~~~~~~~~~~--~~G~~l~p~~a--~ll~rgl~--Tl~lR  247 (380)
T d1ibja_         179 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-----KLAKEVYFLQN--SEGSGLAPFDC--WLCLRGIK--TMALR  247 (380)
T ss_dssp             CGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSH-----HHHHHHHHHHH--HTTCBCCHHHH--HHHHHHHT--THHHH
T ss_pred             cccccCCCEEEecccceeccccCccccccccchh-----hHHHHHHhhcc--ccCCcCCHHHH--HHHHhcch--hhhhh
Confidence            5676 79999999999997743   488877763     45554433211  11221111111  12233332  45778


Q ss_pred             HHHHHHHHHHHHHHHHHC
Q 010008          367 QNKVVSNCRALASRLVEL  384 (520)
Q Consensus       367 ~~~i~~na~~l~~~L~~~  384 (520)
                      +++..+|+..+++.|++.
T Consensus       248 m~~~~~nA~~lA~~L~~h  265 (380)
T d1ibja_         248 IEKQQENARKIAMYLSSH  265 (380)
T ss_dssp             HHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            899999999999999883

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=1.8e-16  Score=161.07  Aligned_cols=289  Identities=13%  Similarity=0.081  Sum_probs=188.1

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      |++..+.+|    ++++++-|.+.     -+...||..|+.+++++++++||+|++.+..||+....-    ..-..-.|
T Consensus        56 ~nPt~~~le----~~la~LEg~~~-----a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~----~~~l~~~G  122 (391)
T d1cl1a_          56 GTLTHFSLQ----QAMCELEGGAG-----CVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFC----SKILSKLG  122 (391)
T ss_dssp             CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHH----HHTGGGGT
T ss_pred             CChhHHHHH----HHHHHHhCCcc-----EEEeccccceeeehhhcccCCCCeEEEecccccchhhhh----hhcccccc
Confidence            788888888    68889999875     355689999999999999999999999999888753211    01112234


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHh--CCEEEEechhhcccccccc
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAV--GALLMMDMAHISGLVAASV  288 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~--g~~li~D~Ah~~gli~~~~  288 (520)
                      .  ++..++      ..|.+++++++++ ++|+|++..+.||+  ..|+++++++|+++  |+++++|.+....     .
T Consensus       123 i--~~~~~d------~~d~~~~~~~i~~-~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP-----~  188 (391)
T d1cl1a_         123 V--TTSWFD------PLIGADIVKHLQP-NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAG-----V  188 (391)
T ss_dssp             C--EEEEEC------TTCGGGGGGTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTT-----T
T ss_pred             c--cccccc------Ccccccccccccc-ccceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccccch-----h
Confidence            3  444432      1367888888887 89999999999997  78999999999875  9999999984333     3


Q ss_pred             cCCCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhH
Q 010008          289 VADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK  364 (520)
Q Consensus       289 ~~~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~  364 (520)
                      ...|++ |+|+|+.|++|++.|-.   +|.++.+++      +.+++.....  ..|+.....-+-  ..++.+.  -+.
T Consensus       189 ~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~------~~~~~~~~~~--~~G~~~~p~~a~--ll~rgl~--TL~  256 (391)
T d1cl1a_         189 LFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNAR------CWEQLRENAY--LMGQMVDADTAY--ITSRGLR--TLG  256 (391)
T ss_dssp             SSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTT------THHHHHHHHH--HTTCCCCHHHHH--HHHHHHT--THH
T ss_pred             hhcccccccceEEeecchhccccccccccceecccc------ccccchhhhh--cccccCCchhhh--hhhccch--hHH
Confidence            346776 79999999999998744   488887763      3333321111  112211111111  1233332  356


Q ss_pred             HHHHHHHHHHHHHHHHHHHC-CCE-EecCCCC---------------CeeEEEEecCCCCCHHHHHHHHhhcCeE---Ec
Q 010008          365 VYQNKVVSNCRALASRLVEL-GYK-LVSGGSD---------------NHLVLVDLRPMGIDGARVEKILDMASIT---LN  424 (520)
Q Consensus       365 ~~~~~i~~na~~l~~~L~~~-G~~-v~~~gt~---------------~~~~~vd~~~~g~~~~~~~~~L~~~gI~---v~  424 (520)
                      .++++..+|+..+++.|++. .+. +..++-.               ..++.+.+.. +.+.+++.++++...+.   ++
T Consensus       257 lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~-~~~~e~~~~f~d~L~l~~~a~S  335 (391)
T d1cl1a_         257 VRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKK-KLNNEELANYLDNFSLFSMAYS  335 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESS-CCCHHHHHHHHTTCSSCBCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccCCCCcceeeeecC-CCCHHHHHHHHHcCCcceEeeC
Confidence            77899999999999999883 333 3222211               1244455543 23556677777765543   22


Q ss_pred             CCC-----C-CC-------C--C-CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          425 KNS-----V-PG-------D--K-SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       425 ~~~-----~-Pg-------~--~-~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      .+.     + |.       .  . -...++-||+|..        -||.+.+.+-|++++.
T Consensus       336 lG~~~SLi~~~~~~~~~~~~~~~~~gi~~~liRlSVG--------lEd~eDLi~Dl~~AL~  388 (391)
T d1cl1a_         336 WGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIG--------LEDVDDLIADLDAGFA  388 (391)
T ss_dssp             CCSSSCEEEEECHHHHHHTSTTCCCCCCSCEEEEECC--------SSCHHHHHHHHHHHHH
T ss_pred             CCCCccceeCCcccccccCCchHhcCCCcCEEEEEec--------cCCHHHHHHHHHHHHH
Confidence            221     0 00       0  0 0122456899865        3677777777777775

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.75  E-value=6.7e-17  Score=169.33  Aligned_cols=310  Identities=15%  Similarity=0.082  Sum_probs=194.4

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCC------CceeeecCChHHHHHHHHHhhCC----------CC--------C-EEE
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENK------WGVNVQPLSGSPANFEVYTAILK----------PH--------D-RIM  187 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~------~~~~V~~~sGs~A~~~~l~all~----------pG--------D-~Vl  187 (520)
                      ..+...++|..+.+|+++++|.+.+.      ..--+.+++||+||+.++.+.-+          +|        + .|+
T Consensus       107 ~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~  186 (476)
T d1js3a_         107 ASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAY  186 (476)
T ss_dssp             GCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEE
T ss_pred             hhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEE
Confidence            35667899999999999999997421      11134556677999887754311          11        1 244


Q ss_pred             EcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcC-----CcEEEEcCCC--CCCCCCHH
Q 010008          188 GLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIAGASA--YPRDFDYP  260 (520)
Q Consensus       188 ~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~-----pklIi~~~s~--~p~~~d~~  260 (520)
                      +.+-   +|++-     .+...+.|..  ...+++| +++.+|+++|++.+++..     |-+|+....+  .+...|++
T Consensus       187 ~s~~---~H~Si-----~ka~~~lGl~--~~~v~~d-~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~  255 (476)
T d1js3a_         187 ASDQ---AHSSV-----ERAGLIGGVK--LKAIPSD-GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLL  255 (476)
T ss_dssp             EETT---CCHHH-----HHHHHHHTCE--EEEECCC-TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHH
T ss_pred             eccc---ccHHH-----HHHHHhcCce--EEEeccC-CCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHH
Confidence            4443   33321     2345566764  4455566 578999999999997532     4455555333  33488999


Q ss_pred             HHHHHHHHhCCEEEEechhhcccccccccCC---CCCcccEEEeccCcccCCCCc-eEEEeeCCCcchhhHHHhh-----
Q 010008          261 RMRQIADAVGALLMMDMAHISGLVAASVVAD---PFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI-----  331 (520)
Q Consensus       261 ~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~---p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~l~~~i-----  331 (520)
                      +|++||+++|+|+++|+|+...+.....+..   .++.+|.++.++|||+..|-+ |++++++..    .+...+     
T Consensus       256 ~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~----~~~~~~~~~~~  331 (476)
T d1js3a_         256 EVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRT----DLTGAFKLDPV  331 (476)
T ss_dssp             HHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHH----HHHGGGC----
T ss_pred             HHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcceeecccchH----HHHHHHhcChh
Confidence            9999999999999999996544443332222   234799999999999988887 888887631    111100     


Q ss_pred             -----cc--c-----CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecCCCCCeeE
Q 010008          332 -----NN--A-----VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLV  398 (520)
Q Consensus       332 -----~~--~-----~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~gt~~~~~  398 (520)
                           ..  .     ...+.+++.....+ .++.+++.....++.+..++..++++++++.|.+ .+++++.+. +..++
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~sr~~~al-~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p-~l~iV  409 (476)
T d1js3a_         332 YLKHSHQGSGLITDYRHWQLPLGRRFRSL-KMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV-TLGLV  409 (476)
T ss_dssp             --------CCSCCCGGGSSSCSCCCCTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC-CSSEE
T ss_pred             hhccccccccccccccccccccchhhHHH-HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCC-ceEEE
Confidence                 00  0     00122334333333 4556777766678899999999999999999988 589998753 23344


Q ss_pred             EEEecCCCCCH--HHHHHHHhhcC-eEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          399 LVDLRPMGIDG--ARVEKILDMAS-ITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       399 ~vd~~~~g~~~--~~~~~~L~~~g-I~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      .+.+.+  .+.  +.+.+.|.+.| +.+....+-      +...+|+.+..   ...+++|++.+.+.|+++.+.
T Consensus       410 ~Fr~~~--~d~~n~~l~~~l~~~G~~~~s~t~~~------g~~~lR~~i~n---~~Tt~~did~~~~~i~~~a~~  473 (476)
T d1js3a_         410 CFRLKG--SDGLNEALLERINSARKIHLVPCRLR------GQFVLRFAICS---RKVESGHVRLAWEHIRGLAAE  473 (476)
T ss_dssp             EEEESS--CHHHHHHHHHHHHHHTSCBCEEEEET------TEEEEEEECCC---TTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEccC--ChHHHHHHHHHHHhcCCEEEeeeeEC------CEEEEEEEeCC---CCCCHHHHHHHHHHHHHHHHH
Confidence            444432  222  34555566655 333211111      12368987532   223589999999999887653

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.74  E-value=4.2e-16  Score=158.31  Aligned_cols=288  Identities=17%  Similarity=0.142  Sum_probs=183.3

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      |++..+.+|    ++++++-|.+.     -+...||..|+.+++.+++++||+|++.+..||+......    .-....|
T Consensus        65 ~nPt~~~LE----~~la~LEgg~~-----a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~----~~~~~~g  131 (398)
T d1qgna_          65 GNPTTVVLE----EKISALEGAES-----TLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIE----TILPKMG  131 (398)
T ss_dssp             CCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHH----HTGGGGT
T ss_pred             CChHHHHHH----HHHHHHhCCce-----EEEecCcchHHHHHHhhcccccccccccccccchhhhhhc----ccccccc
Confidence            688888888    68889999875     3556899999999999999999999999988876532211    1112234


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .  +...++      ..|.++.++.+...++++|++..+.||+  ..|+++|+++|+++|+++++|.+...     ....
T Consensus       132 i--~~~~~~------~~~~~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~at-----P~~~  198 (398)
T d1qgna_         132 I--TATVID------PADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFAT-----PLNQ  198 (398)
T ss_dssp             C--EEEEEC------SSCHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTC-----TTTC
T ss_pred             c--cccccc------ccchhhhhhhhccccceEEEccCccccccccchHHHHHHHHhhcCCEEEecceeec-----cccC
Confidence            3  444432      1344555544433389999999999998  78999999999999999999998433     3345


Q ss_pred             CCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHH
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY  366 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~  366 (520)
                      .|++ |+|||+.|++|++.|..   +|.+..++      ++..++....  ...|+.....-+  ...++.+  .-+..+
T Consensus       199 ~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~------~~~~~~~~~~--~~~G~~l~p~~a--~ll~rgl--~TL~lR  266 (398)
T d1qgna_         199 KALALGADLVLHSATKFLGGHNDVLAGCISGPL------KLVSEIRNLH--HILGGALNPNAA--YLIIRGM--KTLHLR  266 (398)
T ss_dssp             CTTTTTCSEEEECTTTTTTCSSSCCCEEEEECH------HHHHHHHHHH--HHHCCCCCHHHH--HHHHHHG--GGHHHH
T ss_pred             CchhhCCCEEEEechhhcCcccceeehhhcchh------hhhhhhhhhc--ccCCCcCCHHHH--HHHHhcc--hHHHHH
Confidence            6777 79999999999997753   47776665      4544433211  011221111111  1223333  245677


Q ss_pred             HHHHHHHHHHHHHHHHHC-CCE-EecCCCC---------------CeeEEEEecCCCCCHHHHHHHHhhcCeE---EcCC
Q 010008          367 QNKVVSNCRALASRLVEL-GYK-LVSGGSD---------------NHLVLVDLRPMGIDGARVEKILDMASIT---LNKN  426 (520)
Q Consensus       367 ~~~i~~na~~l~~~L~~~-G~~-v~~~gt~---------------~~~~~vd~~~~g~~~~~~~~~L~~~gI~---v~~~  426 (520)
                      .++..+|+..+++.|++. .+. |..++-.               ..++.+++.  + +.+.+.++++...+.   ++.+
T Consensus       267 m~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~--g-~~~~a~~f~~~L~l~~~a~SlG  343 (398)
T d1qgna_         267 VQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVD--G-DLLTTAKFVDALKIPYIAPSFG  343 (398)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEES--S-CHHHHHHHHHHCSSSEECSCCC
T ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeec--C-CHHHHHHHHHcCCcceeeeCCC
Confidence            899999999999999883 443 3333211               223344442  2 445566666665442   2221


Q ss_pred             C------CCC-----CC-------CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          427 S------VPG-----DK-------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       427 ~------~Pg-----~~-------~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      .      .|.     +.       ....++-||++..        -||.+.+.+-|+++++
T Consensus       344 g~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvG--------lEd~eDLi~Dl~~AL~  396 (398)
T d1qgna_         344 GCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG--------VEDFDDLKADILQALD  396 (398)
T ss_dssp             SSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC--------SSCHHHHHHHHHHHHH
T ss_pred             CCcceeeCcchhccccCCHHHHHhcCCCcCEEEEEec--------cCCHHHHHHHHHHHHh
Confidence            1      010     00       0123467999865        3677777777777765

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.74  E-value=8.5e-18  Score=173.62  Aligned_cols=283  Identities=11%  Similarity=0.033  Sum_probs=175.1

Q ss_pred             HHHHHHHHHHHHHHcC-CCCCCCceeeecCChH-HHHHHHHHhh--------CCCCCEEEEcCCCCCccccccccccccc
Q 010008          138 DELETLCQKRALAAFN-LDENKWGVNVQPLSGS-PANFEVYTAI--------LKPHDRIMGLDLPHGGHLSHGFMTPKRR  207 (520)
Q Consensus       138 d~lE~~a~~~~~~lfg-~~~~~~~~~V~~~sGs-~A~~~~l~al--------l~pGD~Vl~~~~~~~ghls~g~~~~~~~  207 (520)
                      .+|++..++ +.+..| +..+..  .|.+++|+ +++.+++.||        ++|||+|+++.|.|..+.        ..
T Consensus       103 ~~L~~~i~~-lh~~~gna~t~~~--~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~--------~~  171 (425)
T d2hoxa1         103 FELEKTIKE-LHEVVGNAAAKDR--YIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFR--------EQ  171 (425)
T ss_dssp             HHHHHHHHH-HHHHHTCBCCTTC--EEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHH--------HH
T ss_pred             HHHHHHHHH-HHhhhCCCCCCCC--EEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHH--------HH
Confidence            366655543 444444 333322  46679998 9999999999        579999999999775331        11


Q ss_pred             cccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC-CCCHHHHHHHHHHhCCEEEEechhhcccccc
Q 010008          208 VSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAA  286 (520)
Q Consensus       208 v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~-~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~  286 (520)
                      +.+.+.  ..+       .+.+|.+.+++.+++ +++++++++||||+ ..-      -+-.+++.+|+|++++ +..+.
T Consensus       172 ~~~~~~--~~~-------~~~~D~~~~~~~~~~-~~~ii~l~sPnNPtG~l~------~~v~~~~~~I~DEaY~-~~~f~  234 (425)
T d2hoxa1         172 TKYFDK--KGY-------VWAGNAANYVNVSNP-EQYIEMVTSPNNPEGLLR------HAVIKGCKSIYDMVYY-WPHYT  234 (425)
T ss_dssp             HHHSCB--TTE-------EEEEEGGGGTTCSCG-GGEEEEEESSCTTTCCCC------CCSSTTCEEEEECTTC-STTTS
T ss_pred             HHHcCC--CCC-------ccCCCHHHHHhhCCC-CceEEEEECCCCCCcchh------hhhhhCCEEEEecccc-Ccccc
Confidence            222222  111       234567777777777 89999999999997 220      0123689999999853 21111


Q ss_pred             cccCCCCC-cccEEEeccCccc--CCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhc----
Q 010008          287 SVVADPFK-YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ----  359 (520)
Q Consensus       287 ~~~~~p~~-~aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~----  359 (520)
                         +.+.. .-+|+++|++|++  +|+|.||++++++     .+.+++.........+.+...++++++ +|+...    
T Consensus       235 ---~~~~~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~-----~i~~~~~~~~~~~~~~vs~~~Q~aa~~-aL~~~~~~~~  305 (425)
T d2hoxa1         235 ---PIKYKADEDILLFTMSKFTGHSGSRFGWALIKDE-----SVYNNLLNYMTKNTEGTPRETQLRSLK-VLKEVVAMVK  305 (425)
T ss_dssp             ---CCCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCH-----HHHHHHHHHHHHHTSSCCHHHHHHHHH-HHHHHHHHHH
T ss_pred             ---chhhhcCCeEEEEeCHHhccCcchheeeEEeCCH-----HHHHHHHHhhccCcccCCHHHHHHHHH-HhhccHHHHH
Confidence               11111 2469999999975  8999999888774     565555443222223445555665543 443211    


Q ss_pred             ------CchhHHHHHHHHHHHHHHHHHHHHCCCEEec----CC----------CCCeeEEEEecCCCCCHHHHHHHHhhc
Q 010008          360 ------SPEFKVYQNKVVSNCRALASRLVELGYKLVS----GG----------SDNHLVLVDLRPMGIDGARVEKILDMA  419 (520)
Q Consensus       360 ------~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~----~g----------t~~~~~~vd~~~~g~~~~~~~~~L~~~  419 (520)
                            ...++...+.+.++.+.+.+.|.+.+...+.    ++          ....+.|+++...  +.+++.++|+++
T Consensus       306 ~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~--~~~~~~~lL~e~  383 (425)
T d2hoxa1         306 TQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE--EDKDCYQTFQNG  383 (425)
T ss_dssp             HHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG--GGCSHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCC--hHHHHHHHHHhC
Confidence                  1223555677778888888888875533221    10          1122456655322  234577889999


Q ss_pred             CeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          420 SITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       420 gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      ||.+.    ||......++++||+..      -++++++++.+.|+++++
T Consensus       384 gI~v~----pGs~FG~~~~yvRisl~------~~~e~ld~~l~rL~~~v~  423 (425)
T d2hoxa1         384 RINTQ----NGVGFEASSRYVRLSLI------KTQDDFDQLMYYLKDMVK  423 (425)
T ss_dssp             TEECE----EGGGGTSCTTEEEEECS------SCHHHHHHHHHHHHHHHT
T ss_pred             CEEEE----echhcCCCCCEEEEEec------CCHHHHHHHHHHHHHHHh
Confidence            99995    44331124689999853      247888999999988875

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.72  E-value=1.2e-15  Score=155.07  Aligned_cols=215  Identities=19%  Similarity=0.157  Sum_probs=151.8

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      |++..+.+|    ++++++-|.+.     -+...||..|+.+++.+++++||+|++.+..||+......    ......|
T Consensus        57 ~nPT~~~le----~~la~LEg~~~-----a~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~----~~~~~~g  123 (394)
T d1e5ea_          57 GNPTVSNLE----GKIAFLEKTEA-----CVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFE----HALTKFG  123 (394)
T ss_dssp             CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHH----THHHHTT
T ss_pred             CCHHHHHHH----HHHHHHhCCcc-----eeeeccchHHHHHHHHhhcccccccccccceeehhhHhHH----HHhhccc
Confidence            688889888    67889999875     3556899999999999999999999999988876532111    1112234


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHH-HhCCEEEEechhhccccccccc
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIAD-AVGALLMMDMAHISGLVAASVV  289 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~-~~g~~li~D~Ah~~gli~~~~~  289 (520)
                      .  ++..++.      -|.+++++++++ ++|+|++..+.||+  +.|++++.++++ ++|+++++|.+...     ...
T Consensus       124 i--~~~~~d~------~d~~~~~~~i~~-~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~at-----P~~  189 (394)
T d1e5ea_         124 I--QVDFINT------AIPGEVKKHMKP-NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCS-----PMI  189 (394)
T ss_dssp             C--EEEEECT------TSTTHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTC-----TTT
T ss_pred             e--eeeccCC------CCHHHHHHhhcc-cccEEEEeccCCcceeeehhhhhhhccccccCeEEEecCcccC-----ccc
Confidence            3  4444332      366789999988 89999999999997  779999988766 47899999987433     334


Q ss_pred             CCCCC-cccEEEeccCcccCCCC---ceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHH
Q 010008          290 ADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV  365 (520)
Q Consensus       290 ~~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~  365 (520)
                      ..|++ |+|||+.|++|++.|-.   +|.+++++      +....++...+....|+.....-+-  ..++.+.  -+..
T Consensus       190 ~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~------~~~~~~~~~~~~~~~G~~lsp~~a~--ll~rgl~--TL~l  259 (394)
T d1e5ea_         190 TNPVDFGVDVVVHSATKYINGHTDVVAGLICGKA------DLLQQIRMVGIKDITGSVISPHDAW--LITRGLS--TLNI  259 (394)
T ss_dssp             CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECH------HHHHHHHHTCCCCCCCCCCCHHHHH--HHHHHHT--THHH
T ss_pred             CCchhcCCCEEEechhhhcCCCcccccccccchh------hHHHHHHHHHHHHhhCCCCChHHHH--HHHhhch--hHHH
Confidence            56777 79999999999998744   48888877      4444433222222233322222221  2233332  3567


Q ss_pred             HHHHHHHHHHHHHHHHHHC
Q 010008          366 YQNKVVSNCRALASRLVEL  384 (520)
Q Consensus       366 ~~~~i~~na~~l~~~L~~~  384 (520)
                      ++++..+|+..++++|++.
T Consensus       260 Rm~r~~~nA~~lA~~L~~h  278 (394)
T d1e5ea_         260 RMKAESENAMKVAEYLKSH  278 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhhc
Confidence            7899999999999999984

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.71  E-value=4.1e-16  Score=151.86  Aligned_cols=318  Identities=12%  Similarity=0.105  Sum_probs=180.3

Q ss_pred             cCCCC--ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCC-hHHHHHHHH
Q 010008          100 ASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS-GSPANFEVY  176 (520)
Q Consensus       100 asen~--~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~s-Gs~A~~~~l  176 (520)
                      ++||.  ++|.|+|||....... ..|      |+..+.    .+.+++++++++|++++    +|.++| |++||..++
T Consensus         5 ~nd~~~g~~P~v~eAl~~~~~~~-~~~------y~~~~~----~~~lr~~ia~~~g~~~~----~v~~tsggtean~~a~   69 (340)
T d1svva_           5 VNDYSVGMHPKILDLMARDNMTQ-HAG------YGQDSH----CAKAARLIGELLERPDA----DVHFISGGTQTNLIAC   69 (340)
T ss_dssp             SCSCSSCCCHHHHHHHHHHTTCC-CCS------TTCSHH----HHHHHHHHHHHHTCTTS----EEEEESCHHHHHHHHH
T ss_pred             ccCCCCCCCHHHHHHHHHHhhcC-CCC------CCCCHH----HHHHHHHHHHHhCCCcc----eEEEcCCHHHHHHHHH
Confidence            46764  5799999998754322 223      332333    33456899999999875    455554 669999999


Q ss_pred             HhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhc----C--CcEEEEcC
Q 010008          177 TAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF----R--PKLIIAGA  250 (520)
Q Consensus       177 ~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~----~--pklIi~~~  250 (520)
                      .++.++||.++...+.+.++......     . ..+.  .......  .....+.+...++....    .  +.++++..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (340)
T d1svva_          70 SLALRPWEAVIATQLGHISTHETGAI-----E-ATGH--KVVTAPC--PDGKLRVADIESALHENRSEHMVIPKLVYISN  139 (340)
T ss_dssp             HHHCCTTEEEEEETTSHHHHSSTTHH-----H-HTTC--CEEEECC--TTSCCCHHHHHHHHHHSCSTTSCEEEEEEEES
T ss_pred             HHHhhhccccccccccceeeeecccc-----c-ccce--eeeeccc--ccccccchhHHHHhhhhhcccCCcceeeeecc
Confidence            99999999999888765444322211     1 1111  1112111  22333444333332221    1  23444445


Q ss_pred             CCCCC-CC---CHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC----cccEEEeccCcccCCCCceEEEeeCCCc
Q 010008          251 SAYPR-DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSLRGPRGGMIFFKKDPV  322 (520)
Q Consensus       251 s~~p~-~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~----~aDiv~~S~hK~l~GprgG~I~~~~~~~  322 (520)
                      +++++ ..   ++..+.++|+++|+++++|.++..+....+.......    ..++...+.+|...++.+++.....   
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  216 (340)
T d1svva_         140 TTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILND---  216 (340)
T ss_dssp             SCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSG---
T ss_pred             cccccccccHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccccccccch---
Confidence            55444 33   4666788999999999999998766655443322211    2446677777766555555555443   


Q ss_pred             chhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEe
Q 010008          323 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDL  402 (520)
Q Consensus       323 ~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~  402 (520)
                         ............. .++...... +.+.++.......+..+.++...+++.+.+.|+..|++++.+. ..+++++++
T Consensus       217 ---~~~~~~~~~~~~~-~~~~~~~~~-~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~-~~~~v~~~~  290 (340)
T d1svva_         217 ---ALKPNARHLIKQR-GALMAKGWL-LGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLAWPS-ASNQLFPIL  290 (340)
T ss_dssp             ---GGCTTHHHHHHHT-TCCCTTTHH-HHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCC-SSSEECBEE
T ss_pred             ---hhhhhhhhhcccc-cCccchhhH-HHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcCCCeeecCC-CceEEEEeC
Confidence               1111111110001 111111111 2222333333445677888889999999999999999987653 345555555


Q ss_pred             cCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          403 RPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       403 ~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      .     ...+.++++ .++.......     +..++.||++++..||    ++|++++++.|++
T Consensus       291 ~-----~~~~~~l~~-~~~~~~~~~~-----~~~~~~vR~s~~~~~t----~edid~~l~~l~~  339 (340)
T d1svva_         291 E-----NTMIAELNN-DFDMYTVEPL-----KDGTCIMRLCTSWATE----EKECHRFVEVLKR  339 (340)
T ss_dssp             E-----HHHHHHHTT-TEECEEEEEE-----TTTEEEEEEECCTTCC----HHHHHHHHHHHHH
T ss_pred             C-----HHHHHHHHH-hhhhhccccc-----CCCCcEEEEECCCCCC----HHHHHHHHHHHhc
Confidence            3     334444443 3332211111     2246789998876554    8999999999876

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.71  E-value=3.8e-17  Score=165.04  Aligned_cols=337  Identities=13%  Similarity=0.076  Sum_probs=190.9

Q ss_pred             ceEecCCCCChHHHHHHHhhhhhccCCCCCC----CCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHH
Q 010008           96 LELIASENFTSRAVMEAVGSCLTNKYSEGLP----GKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA  171 (520)
Q Consensus        96 i~Liasen~~~~~V~ea~~s~l~~~y~~G~p----~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A  171 (520)
                      .|+.+++..+|+.|+|+|...+.+.+..|..    +.|   ..++.+.++ .+++.++++|+++.++. +.+..++|+.+
T Consensus         5 ~~F~pGP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHR---s~ef~~~~~-~~r~~l~~l~~~~~~~~-i~~~~gs~t~~   79 (361)
T d2c0ra1           5 YNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHR---GAVYEAVHN-EAQARLLALLGNPTGYK-VLFIQGGASTQ   79 (361)
T ss_dssp             EECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTT---SHHHHHHHH-HHHHHHHHHTTCCSSEE-EEEESSHHHHH
T ss_pred             cccCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcC---CHHHHHHHH-HHHHHHHHHhCCCCCCE-EEEECCCchHH
Confidence            3567888889999999999887764322221    222   445555555 68899999999975422 22323333356


Q ss_pred             HHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCC
Q 010008          172 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS  251 (520)
Q Consensus       172 ~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s  251 (520)
                      +.++...+..+||++++..-.   ++.+.+.   ......|........+   ....+|.+.+++.+.. . +.+.+.. 
T Consensus        80 ~ea~~~~l~~~~~~~l~~~~g---~~~~~~~---~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~-~-~~~~v~~-  147 (361)
T d2c0ra1          80 FAMIPMNFLKEGQTANYVMTG---SWASKAL---KEAKLIGDTHVAASSE---ASNYMTLPKLQEIQLQ-D-NAAYLHL-  147 (361)
T ss_dssp             HHHHHHHHCCTTCEEEEEECS---HHHHHHH---HHHHHHSCEEEEEECG---GGTTCSCCCGGGCCCC-T-TEEEEEE-
T ss_pred             HHHHHhccccCCCceEEEeec---hhhhhhh---hhhhhcCceeeeeccc---cccccchhhhhhhccc-C-cceEEEE-
Confidence            667777889999999887632   2211111   1122334433333322   2356777777766654 2 3333321 


Q ss_pred             CCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCceEEEeeCCC-c-------c
Q 010008          252 AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDP-V-------L  323 (520)
Q Consensus       252 ~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~GprgG~I~~~~~~-~-------~  323 (520)
                      ..+...+.+++.++|+++|+++++|++++.|....     .+...|+.+.++||.+..|.++.++..... .       .
T Consensus       148 ~tg~~~~~~~i~~~~~~~~al~~vDavss~g~~~i-----d~~~~di~~~s~~k~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (361)
T d2c0ra1         148 TSNETIEGAQFKAFPDTGSVPLIGDMSSDILSRPF-----DLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPT  222 (361)
T ss_dssp             ESEETTTTEECSSCCCCTTSCEEEECTTTTTSSCC-----CGGGCSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCG
T ss_pred             ecccceecceEEEeeccCCceEEEEeecccccccc-----ccccceeEEEecccccccccCcEEEEEhHHhhhCcccccc
Confidence            11224566778889999999999999988876533     233568888889998866666544444321 0       0


Q ss_pred             hhhHHHhhcccCCCCCCCCChHHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHHHHHHHHHCC--CEEecC-CC-CCeeE
Q 010008          324 GVELESAINNAVFPGLQGGPHNHTIGGLAVCLK-HAQSPEFKVYQNKVVSNCRALASRLVELG--YKLVSG-GS-DNHLV  398 (520)
Q Consensus       324 ~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~-~~~~~~~~~~~~~i~~na~~l~~~L~~~G--~~v~~~-gt-~~~~~  398 (520)
                      ...+.......   ....++....+.+...+.. ...........++....+..+.......+  ...... .. .+..+
T Consensus       223 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~  299 (361)
T d2c0ra1         223 MLRYDTYVKNN---SLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNI  299 (361)
T ss_dssp             GGCHHHHHHTT---TCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEE
T ss_pred             ccccccccccc---cccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccceEE
Confidence            01111111111   1122233333333222222 22222334445555555555555555432  222221 11 12333


Q ss_pred             EEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          399 LVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       399 ~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      .+.+ +.+++.+++.+.|++.||.+..    |...   -+++|||+...+    +.+|+++++++|++..+
T Consensus       300 ~~~~-~~~~~~~~~~~~L~~~GI~~~~----G~~~---~g~~RIs~~~~~----~~edv~~Lv~~l~~~~~  358 (361)
T d2c0ra1         300 TFRL-ASEELEKEFVKASEQEGFVGLK----GHRS---VGGLRASIYNAV----PYESCEALVQFMEHFKR  358 (361)
T ss_dssp             EEEC-SCHHHHHHHHHHHHHTTEESCB----CCTT---TCSEEEECCTTS----CHHHHHHHHHHHHHHHH
T ss_pred             EEEC-CCcccHHHHHHHHHHCCCEEec----CCCc---CCeEEEEecCCC----CHHHHHHHHHHHHHHHH
Confidence            4444 3445567889999999998744    3321   246999987554    48999999999998654

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.70  E-value=1.1e-15  Score=152.07  Aligned_cols=279  Identities=15%  Similarity=0.167  Sum_probs=178.9

Q ss_pred             HHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCC
Q 010008          146 KRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES  225 (520)
Q Consensus       146 ~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~  225 (520)
                      ++++++-|.+.     -+...||..|+..+++++++|||+|++.+..|||......    .-..-.|.  ++.+++.   
T Consensus         5 ~~la~Leg~~~-----a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~----~~l~~~gi--~~~~~d~---   70 (331)
T d1pffa_           5 GKIAKLEHAEA-----CAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFE----HQLRKFGV--EVDFIDM---   70 (331)
T ss_dssp             HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHH----THHHHTTC--EEEEECT---
T ss_pred             HHHHHHhCCCe-----EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHH----HHHHhcCe--EEEEecc---
Confidence            67888999875     3556899999999999999999999999988887542211    11122343  4545332   


Q ss_pred             CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHH-HHhCCEEEEechhhcccccccccCCCCC-cccEEEe
Q 010008          226 TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIA-DAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTT  301 (520)
Q Consensus       226 ~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia-~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv~~  301 (520)
                         -|.+.+++++++ ++++|++..+.||.  ..|++++++++ +++|+++++|.+....+     ...|++ |+|||+.
T Consensus        71 ---~d~~~~~~~i~~-~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~-----~~~pl~~GaDiVv~  141 (331)
T d1pffa_          71 ---AVPGNIEKHLKP-NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPI-----LTNPLDLGVDIVVH  141 (331)
T ss_dssp             ---TSTTHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHH-----HCCGGGGTCSEEEE
T ss_pred             ---cchhhHhhhccc-ccceeeeecccccccccccchhhhhhhhcccCceEEeeccccccc-----cccccccCCCEEEe
Confidence               378899999988 89999999998887  78999999885 67899999999844332     245777 7999999


Q ss_pred             ccCcccCCC---CceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 010008          302 TTHKSLRGP---RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALA  378 (520)
Q Consensus       302 S~hK~l~Gp---rgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~  378 (520)
                      |++|++.|-   -+|.++.++      +...+.....+....|+.....-+-  ..++.+  .-+..+.++..+|+..++
T Consensus       142 S~TKy~~Gh~d~~~G~v~~~~------~~~~~~~~~~~~~~~G~~l~p~~a~--ll~rgl--~Tl~~Rm~~~~~nA~~lA  211 (331)
T d1pffa_         142 SATKYINGHTDVVAGLVCSRA------DIIAKVKSQGIKDITGAIISPHDAW--LITRGT--LTLDMRVKRAAENAQKVA  211 (331)
T ss_dssp             ETTTTTSSSSSCCCEEEEECH------HHHHHHHHTCCCCCCCCCCCHHHHH--HHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred             cchhhcCCCCccccccccccc------cchhhhhhhhhhhccCCCCCHHHHH--HHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            999999774   348888876      3333322222222223322111111  112222  234667899999999999


Q ss_pred             HHHHHC-CC-EEecCCC---------------CCeeEEEEecCCCCCHHHHHHHHhhcCeE---EcCCC------CCCC-
Q 010008          379 SRLVEL-GY-KLVSGGS---------------DNHLVLVDLRPMGIDGARVEKILDMASIT---LNKNS------VPGD-  431 (520)
Q Consensus       379 ~~L~~~-G~-~v~~~gt---------------~~~~~~vd~~~~g~~~~~~~~~L~~~gI~---v~~~~------~Pg~-  431 (520)
                      +.|++. .+ +|..++-               .+.++.+.+.    +.+.+.++++...+.   ++.+.      .|.. 
T Consensus       212 ~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~----~~~~~~~f~d~l~lf~~~~SlG~~~SLi~~p~~~  287 (331)
T d1pffa_         212 EFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD----GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASM  287 (331)
T ss_dssp             HHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS----SHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHH
T ss_pred             HhhhhCCcEEeeccccccCccHHHHHhhcccccCcccceeec----cHHHHHHHHHhCCcceecccCCCCceeEeCcccc
Confidence            999883 44 3433321               1223444443    346667777765542   22221      0100 


Q ss_pred             --C---------CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          432 --K---------SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       432 --~---------~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                        .         ....++-||++..        -||.+.+.+-+.++++
T Consensus       288 ~h~~~~~e~~~~~Gi~~~liRlsvG--------lE~~~DLi~Dl~~AL~  328 (331)
T d1pffa_         288 THAGVPKEEREAAGLTDNLIRLSVG--------CENVQDIIDDLKQALD  328 (331)
T ss_dssp             TSTTSCHHHHHHTTCCTTEEEEECC--------SSCHHHHHHHHHHHHH
T ss_pred             ccccCCHHHHHhcCCCcCeEEEEee--------eCCHHHHHHHHHHHHH
Confidence              0         0123567999864        3677777777777765

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=1.7e-15  Score=154.73  Aligned_cols=163  Identities=21%  Similarity=0.154  Sum_probs=123.3

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      |++..+.+|    ++++++-|.+.     .+...||..|+.+++.+++++||+|++.+..||+....-    .......|
T Consensus        56 ~nPT~~~LE----~~la~LE~~~~-----a~~~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~----~~~~~~~g  122 (421)
T d2ctza1          56 MNPTVDVLE----KRLAALEGGKA-----ALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQF----KVTLKRLG  122 (421)
T ss_dssp             BCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHH----HTHHHHTT
T ss_pred             CCHHHHHHH----HHHHHHhCCCe-----EEEecChHHHHHHHHHhhcccccceeecCCcCCchhHHH----HHHHhhcc
Confidence            788888888    67888989875     355689999999999999999999999998887753211    11112233


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHhCCEEEEechhhcccccccccC
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA  290 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~  290 (520)
                      .  +...++.     .-+.+..++.+++ ++|+|++..|.||+  +.|+++|+++|+++|+++++|.+.+..    ....
T Consensus       123 i--~~~~~d~-----~~~~~~~~~~~~~-~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~t----P~~~  190 (421)
T d2ctza1         123 I--EVRFTSR-----EERPEEFLALTDE-KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMG----GYLL  190 (421)
T ss_dssp             C--EEEECCT-----TCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGG----GTSC
T ss_pred             c--cceeccc-----ccCcchhccccCC-CceEEEEcCCCcceeEecchHHHHHHHHhcCCceEeccccccc----ceec
Confidence            3  4445332     1234566667777 89999999999998  789999999999999999999984311    2234


Q ss_pred             CCCC-cccEEEeccCcccCCCC---ceEEEeeCC
Q 010008          291 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKD  320 (520)
Q Consensus       291 ~p~~-~aDiv~~S~hK~l~Gpr---gG~I~~~~~  320 (520)
                      .|+. |+|||+.|++|++.|-.   +|.++.+++
T Consensus       191 ~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~  224 (421)
T d2ctza1         191 RPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGN  224 (421)
T ss_dssp             CGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSC
T ss_pred             cccccCCcEEEEechhhccCCCCeEEEEEEcCCc
Confidence            5776 89999999999998744   388887764

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=1.1e-16  Score=160.31  Aligned_cols=339  Identities=11%  Similarity=-0.049  Sum_probs=190.4

Q ss_pred             ceEecCCCCChHHHHHHHhhhhhccCCCCCCCCC-CCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH--HHH
Q 010008           96 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKR-YYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS--PAN  172 (520)
Q Consensus        96 i~Liasen~~~~~V~ea~~s~l~~~y~~G~p~~r-yy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs--~A~  172 (520)
                      .|+.|++..+|+.|++||...+.|.+..|..-.. ...+.++.+.++ .+++.++++||++.++   .|..++|+  .++
T Consensus         3 ~nF~pGP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~-~~r~~l~~l~~~~~~~---~v~~~~gs~t~~~   78 (360)
T d1bjna_           3 FNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAE-EAEKDFRDLLNVPSNY---KVLFCHGGGRGQF   78 (360)
T ss_dssp             EECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHH-HHHHHHHHHHTCCTTE---EEEEESSHHHHHH
T ss_pred             EEeCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHH-HHHHHHHHHhCCCCCC---EEEEECCchHHHH
Confidence            4677888889999999999988765432221100 112455555555 6889999999997542   23334433  556


Q ss_pred             HHHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 010008          173 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA  252 (520)
Q Consensus       173 ~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~  252 (520)
                      .++...+..++|.+++..-.+.+.   .+..   .....+.  ..+.+..+ .....|.+.+++.+.. +++++.+...+
T Consensus        79 ~a~~~~~~~~~~~v~~~~~~~~~~---~~~~---~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~v~v~~~~  148 (360)
T d1bjna_          79 AAVPLNILGDKTTADYVDAGYWAA---SAIK---EAKKYCT--PNVFDAKV-TVDGLRAVKPMREWQL-SDNAAYMHYCP  148 (360)
T ss_dssp             HHHHHHHCTTCCEEEEEESSHHHH---HHHH---HHTTTSE--EEEEECEE-EETTEEEECCGGGCCC-CSSCSCEEECS
T ss_pred             hhhhhcccccccccceecccchhh---hhHH---HHhhcCc--cceeeccc-cCCCcchhhhhhhhcc-CCceeEEEecc
Confidence            666667788889988875322111   1100   1112232  22222222 1234455555555555 67765554333


Q ss_pred             C--CCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCc-eEEEeeCCCc------c
Q 010008          253 Y--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPV------L  323 (520)
Q Consensus       253 ~--p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~Gprg-G~I~~~~~~~------~  323 (520)
                      +  ++..+.+.+  .++.+++.+++|.+++.+-+..     ....+|+.++|+||++.+|.+ |+++..+...      .
T Consensus       149 ~~t~~~~~~~~i--~~~~~~~~v~vDa~~~~~~~~v-----d~~~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~~~  221 (360)
T d1bjna_         149 NETIDGIAIDET--PDFGADVVVAADFSSTILSRPI-----DVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACP  221 (360)
T ss_dssp             EETTTTEECCCC--CCCCTTCCEEEECTTTTTSSCC-----CGGGCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTTSC
T ss_pred             cccccCccccce--ecccccceeeeeeeccccceee-----eeccceeEEEEcccccccCCCceeEeeehhhhhccccCC
Confidence            3  334444433  3567899999998765543321     122689999999999987777 4555544210      0


Q ss_pred             -hhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecC--CCCC-eeEE
Q 010008          324 -GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG--GSDN-HLVL  399 (520)
Q Consensus       324 -~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~--gt~~-~~~~  399 (520)
                       ...+......  ......++......+...++............++..+.+..+.+.+...+......  ...+ ..+.
T Consensus       222 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~  299 (360)
T d1bjna_         222 SILDYSILNDN--GSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVP  299 (360)
T ss_dssp             GGGCHHHHHHT--TTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEE
T ss_pred             cchhhHHHHhh--hhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccceEEE
Confidence             0011111111  11122334444444444444444433444555566666666666666665554432  1112 2233


Q ss_pred             EEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          400 VDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       400 vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                      +.+ +.+.+.+.+...|+++||.+..    |+.+   -+++|||+...+    +++|++++.++|++..+
T Consensus       300 f~~-~~~~~~~~~~~~l~~~Gi~~~~----G~~~---~g~~Ris~~~~~----t~edV~~li~~l~e~~~  357 (360)
T d1bjna_         300 FQL-ADSALDKLFLEESFAAGLHALK----GHRV---VGGMRASIYNAM----PLEGVKALTDFMVEFER  357 (360)
T ss_dssp             EEE-SSGGGHHHHHHHHHHTTEECCB----CCTT---TCSEEEECCTTS----CHHHHHHHHHHHHHHHH
T ss_pred             EEc-CCcccHHHHHHHHHHCCCEeec----CCCc---cCeEEEEecCCC----CHHHHHHHHHHHHHHHH
Confidence            444 3456677888999999998743    3321   246999986554    48999999999988554

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=5.3e-15  Score=150.07  Aligned_cols=287  Identities=14%  Similarity=0.135  Sum_probs=183.2

Q ss_pred             cchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhCCCCCEEEEcCCCCCcccccccccccccccccc
Q 010008          133 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS  212 (520)
Q Consensus       133 g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g  212 (520)
                      |++..+.+|    ++++++-|.+.     -+...||..|+.+ +.+++++||+|++.+..||+......    .-+...|
T Consensus        53 gnPT~~~lE----~~la~LE~~~~-----a~~~sSGmaAi~~-~l~~l~~gd~iv~~~~~yg~t~~~~~----~~l~~~g  118 (393)
T d1n8pa_          53 QNPNRENLE----RAVAALENAQY-----GLAFSSGSATTAT-ILQSLPQGSHAVSIGDVYGGTHRYFT----KVANAHG  118 (393)
T ss_dssp             CCHHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHHH-HHHTSCSSCEEEEESSCCHHHHHHHH----HTSTTTC
T ss_pred             CChHHHHHH----HHHHHHhCCce-----EEEecCchhHHHh-hhhcccCCCeeeeeeeecccchhhhh----hhhhccc
Confidence            788889888    68889998875     3556899988864 45778999999999988876432111    1112223


Q ss_pred             ceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHH----HhCCEEEEechhhcccccc
Q 010008          213 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIAD----AVGALLMMDMAHISGLVAA  286 (520)
Q Consensus       213 ~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~--~~d~~~i~~ia~----~~g~~li~D~Ah~~gli~~  286 (520)
                      .  ++..+  +     .+.+++++++++ ++|+|++..|.||+  ..|+++|+++|+    ++|+++++|.+....+   
T Consensus       119 i--~~~~~--~-----~~~~~~~~~i~~-~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~---  185 (393)
T d1n8pa_         119 V--ETSFT--N-----DLLNDLPQLIKE-NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPY---  185 (393)
T ss_dssp             S--CCEEE--S-----SHHHHHHHHSCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHH---
T ss_pred             c--eeEEe--e-----cchHHHHHHhhh-hcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCcc---
Confidence            3  22222  1     345789999988 99999999999998  789999999999    6789999999843332   


Q ss_pred             cccCCCCC-cccEEEeccCcccCCC---CceEEEeeCCCcchhhHHHhhcccC-CCCCCCCChHHHHHHHHHHHHHhcCc
Q 010008          287 SVVADPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINNAV-FPGLQGGPHNHTIGGLAVCLKHAQSP  361 (520)
Q Consensus       287 ~~~~~p~~-~aDiv~~S~hK~l~Gp---rgG~I~~~~~~~~~~~l~~~i~~~~-~p~~~g~p~~~~iaala~al~~~~~~  361 (520)
                        ...|++ |+|||+.|++|++.|-   -+|.++.++.     ++.+++.... ..|..-+|  .  . ....++.+.  
T Consensus       186 --~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~-----~~~~~l~~~~~~~G~~~~p--~--~-a~ll~rgl~--  251 (393)
T d1n8pa_         186 --ISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNK-----PLYERLQFLQNAIGAIPSP--F--D-AWLTHRGLK--  251 (393)
T ss_dssp             --HCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCH-----HHHHHHHHHHHHHCCCCCH--H--H-HHHHHHHHT--
T ss_pred             --cCCchhhCCCEEEEccccccCCCCccccceeeecch-----hHHHHHHHHHhhcCCCCCh--H--H-HHHHHhCCc--
Confidence              345776 7999999999999874   4588877763     4555554321 11111111  1  1 112334432  


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHC--CCEEe-cCCC-----------------CCeeEEEEecCCCCCHHHHHHHHhhcCe
Q 010008          362 EFKVYQNKVVSNCRALASRLVEL--GYKLV-SGGS-----------------DNHLVLVDLRPMGIDGARVEKILDMASI  421 (520)
Q Consensus       362 ~~~~~~~~i~~na~~l~~~L~~~--G~~v~-~~gt-----------------~~~~~~vd~~~~g~~~~~~~~~L~~~gI  421 (520)
                      -+..+.++..+|+..+++.|.+.  .+..+ .++-                 ...++.+++..   +.+.+.++++...+
T Consensus       252 Tl~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~---~~~~~~~f~~~l~l  328 (393)
T d1n8pa_         252 TLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKG---GAEAASKFASSTRL  328 (393)
T ss_dssp             THHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESS---CHHHHHHHHHHCSS
T ss_pred             chhhHHHHHHHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccccCCCCceEEEEEeC---CHHHHHHHHHhCCc
Confidence            35677899999999999999753  34332 2211                 12244555542   34555566655443


Q ss_pred             E---EcCCC------CCCC---------C---CCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHH
Q 010008          422 T---LNKNS------VPGD---------K---SALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEIT  471 (520)
Q Consensus       422 ~---v~~~~------~Pg~---------~---~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~  471 (520)
                      .   ++.+.      .|..         .   ....++.|||+..        -||.+.+.+-|.++++.+
T Consensus       329 ~~~~~SlGg~~SLi~~p~~~~h~~~~~~~r~~~gi~~~liRlSvG--------lE~~~DLi~Dl~~AL~~a  391 (393)
T d1n8pa_         329 FTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVG--------IEDTDDLLEDIKQALKQA  391 (393)
T ss_dssp             SEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECC--------SSCHHHHHHHHHHHHHHH
T ss_pred             ceecccCCCcCceEeCchhhccccCCHHHHHhcCCCcCEEEEEec--------cCCHHHHHHHHHHHHHHh
Confidence            2   22211      1210         0   0122457999865        378888888888888754

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.54  E-value=6.7e-15  Score=147.78  Aligned_cols=341  Identities=11%  Similarity=-0.006  Sum_probs=178.6

Q ss_pred             cceEecCCCCChHHHHHHHhhhhhccCCCCC-CCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChH-HHH
Q 010008           95 SLELIASENFTSRAVMEAVGSCLTNKYSEGL-PGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PAN  172 (520)
Q Consensus        95 ~i~Liasen~~~~~V~ea~~s~l~~~y~~G~-p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs-~A~  172 (520)
                      ..+..++...+|++|+++|...+.|.+..|. .-..-+...++.+.++ .+++.++++|+++.++   .|..++|+ +++
T Consensus         4 ~~nF~pGP~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~-~~r~~l~~l~~~~~~~---~i~~~~gt~~~~   79 (360)
T d1w23a_           4 VFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHE-QAQNLLRELLQIPNDY---QILFLQGGASLQ   79 (360)
T ss_dssp             CEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHH-HHHHHHHHHHTCCTTE---EEEEESSHHHHH
T ss_pred             eeEeCCCCcCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHH-HHHHHHHHHhCCCCCC---EEEEeCCcHHHH
Confidence            3467778888999999999988766432111 0001122344555554 6889999999998653   34556665 444


Q ss_pred             H-HHHHhhCCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCC
Q 010008          173 F-EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS  251 (520)
Q Consensus       173 ~-~~l~all~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s  251 (520)
                      . ++...+.++++.|++....   +....+.   ......+........+.   ....+.+.+++....  .....+.. 
T Consensus        80 ~~~~~~~~~~~~~~v~~~~~g---~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~-  147 (360)
T d1w23a_          80 FTMLPMNLLTKGTIGNYVLTG---SWSEKAL---KEAKLLGETHIAASTKA---NSYQSIPDFSEFQLN--ENDAYLHI-  147 (360)
T ss_dssp             HHHHHHHHCCTTCEEEEEECS---HHHHHHH---HHHHTTSEEEEEEECGG---GTSCSCCCGGGCCCC--TTEEEEEE-
T ss_pred             HHHHHhhhcccCcccceeecc---chhhhhH---HHHHHhhhcceeecccc---ccccchhhhhhcccc--cccceeEe-
Confidence            4 4555668888999887532   2111111   11122333223333221   122333333333322  23333322 


Q ss_pred             CCCCCCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCCcccEEEeccCcccCCCCceEEEeeCCC-------cch
Q 010008          252 AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDP-------VLG  324 (520)
Q Consensus       252 ~~p~~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~~aDiv~~S~hK~l~GprgG~I~~~~~~-------~~~  324 (520)
                      ..+...|+++|.++|+++|+++++|++++.|....+....   ++|+.+++.||+++ |.+|+++.++..       ...
T Consensus       148 ~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~~id~~~~---~vd~~~~~~~k~~~-~~~~~~~~~~~~~~~~~~~~~~  223 (360)
T d1w23a_         148 TSNNTIYGTQYQNFPEINHAPLIADMSSDILSRPLKVNQF---GMIYAGAQKNLGPS-GVTVVIVKKDLLNTKVEQVPTM  223 (360)
T ss_dssp             ESEETTTTEECSSCCCCCSSCEEEECTTTTTSSCCCGGGC---SEEEEETTTTTSCT-TCEEEEEEHHHHCSCCTTCCGG
T ss_pred             cCCccccceeeeeccccceeeEEeeccccccccccccccc---cceEEeeccccccC-CcceeeEechhhhcccccCCcc
Confidence            2234668889999999999999999999988765443322   46677777666543 333555543310       000


Q ss_pred             hhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHHHHH-C-CCEEecC-CCCC-eeEE
Q 010008          325 VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKVVSNCRALASRLVE-L-GYKLVSG-GSDN-HLVL  399 (520)
Q Consensus       325 ~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~-~~~~~~~i~~na~~l~~~L~~-~-G~~v~~~-gt~~-~~~~  399 (520)
                      ..+......   .....++......+...++....... .....++...++......... . ...+... ...+ ..+.
T Consensus       224 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~vvs  300 (360)
T d1w23a_         224 LQYATHIKS---DSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVT  300 (360)
T ss_dssp             GCHHHHHHT---TTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEE
T ss_pred             hhhhhhhhh---hhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCChhhcceeEEE
Confidence            001111111   11122333333333222222222222 233344444444444444433 2 2333221 1112 2333


Q ss_pred             EEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          400 VDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       400 vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      +.+. .+.+.+.+...|.+.||.+..    |+..   -+++|||+...    ++.+|++.+.++|++..++
T Consensus       301 f~i~-~~~~~~~~~~~l~~~GI~~~~----G~~~---~ggiRiS~~~~----~t~e~V~~Li~~~~~~~~~  359 (360)
T d1w23a_         301 FNLR-NEELNQQFLAKAKEQGFVGLN----GHRS---VGGCRASIYNA----VPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             EECS-SHHHHHHHHHHHHHTTEESCB----CCTT---TCSEEEECCTT----SCHHHHHHHHHHHHHHHHH
T ss_pred             EEcC-CCccHHHHHHHHHHCCCeeee----CCCc---cCcEEEEeeCC----CCHHHHHHHHHHHHHHHhc
Confidence            4443 233446777889999999744    3321   24799997432    4689999999999887664

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=99.51  E-value=1.2e-12  Score=133.95  Aligned_cols=291  Identities=16%  Similarity=0.079  Sum_probs=179.6

Q ss_pred             HHHHHHHHcCCCCCCCceeeecCChHHHHHHHHH-hh-CCCCCEEEEcCCCCCccccccccccccccccccceEEEEEcc
Q 010008          144 CQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT-AI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR  221 (520)
Q Consensus       144 a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~-al-l~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v~~~  221 (520)
                      -+.+++++.|.+.    +|.++..|++|....+. +. ....+++++....|...  |+-    ....+...+++++.++
T Consensus       113 ~q~~l~eltGmd~----~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~--~~v----~~t~a~~~g~~vv~v~  182 (437)
T d1wyua1         113 YQTMIAELAGLEI----ANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEY--RAV----LRAYLEAVGAKLLTLP  182 (437)
T ss_dssp             HHHHHHHHHTSSE----ECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHH--HHH----HHHHHHHTTCEEEEEC
T ss_pred             HHHHHHHhhCCCc----cccCchHHHHHHHHHHHHHHhhhcccccccccccChHH--hhh----hhhhcccceeeEEeee
Confidence            4589999999997    69999999966654443 32 23457788877655432  221    0111223345777766


Q ss_pred             cCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC-CCCHHHHHHHHHHhCCEEEEechhhcccccccccCCCCC-cccEE
Q 010008          222 LDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVV  299 (520)
Q Consensus       222 ~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~-~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~~-~aDiv  299 (520)
                      .+  ++..+.++    +.+ ++..|++.+||+-+ ..|++++.+++++.|+++++|+.-.    +.+....|-+ ++||+
T Consensus       183 ~~--~~~~~~~~----~~~-~~Aavmi~~Pnt~G~~ed~~~i~~~~h~~G~l~~~~ad~~----al~~l~~Pg~~GaDi~  251 (437)
T d1wyua1         183 LE--GGRTPLPE----VGE-EVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVADPL----SLGVLKPPGAYGADIA  251 (437)
T ss_dssp             CB--TTBCCCCC----CCT-TEEEEEEESSCTTSBCCCHHHHHHHHHHTTCEEEEECCTT----GGGTBCCHHHHTCSEE
T ss_pred             cc--cccchhhh----hcc-ceeEEEEccccccccccchHHHHHHhhhccceEEeeechh----hhhccccccccccceE
Confidence            65  33333322    334 67888999888766 6689999999999999988885422    1222233433 79999


Q ss_pred             EeccCccc------CCCCceEEEeeCCCc----------------------chhhHHHhhcccCCCCCCCCCh-HHHHHH
Q 010008          300 TTTTHKSL------RGPRGGMIFFKKDPV----------------------LGVELESAINNAVFPGLQGGPH-NHTIGG  350 (520)
Q Consensus       300 ~~S~hK~l------~GprgG~I~~~~~~~----------------------~~~~l~~~i~~~~~p~~~g~p~-~~~iaa  350 (520)
                      +++ ||+|      +||..|++.++++..                      ......+.|++.......++.. ...+.+
T Consensus       252 ~g~-~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a  330 (437)
T d1wyua1         252 VGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMG  330 (437)
T ss_dssp             EEE-CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHH
T ss_pred             eec-cceeccccCCCcCccccccccchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHH
Confidence            988 6654      677779999987410                      0001111122211111112111 111111


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-CCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCC
Q 010008          351 LAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE-LGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVP  429 (520)
Q Consensus       351 la~al~~~~~~~~~~~~~~i~~na~~l~~~L~~-~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~P  429 (520)
                       ++-+..+...++++..++...|+.++.+.|.+ .|++++.++..-|-+.+++   +.+..++.++|.++||.......|
T Consensus       331 -~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~~f~ef~v~~---~~~~~~i~k~L~d~G~~~~~~~~~  406 (437)
T d1wyua1         331 -AMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALAL---PKDPEAVRRALAERGFHGATPVPR  406 (437)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEEC---SSCHHHHHHHHHHTTCCCCEECCT
T ss_pred             -HHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCCeeeEEEEEC---CCCHHHHHHHHHhCCCCCCccccc
Confidence             11233344456789999999999999999988 5888765433223345554   346788999999999964322112


Q ss_pred             CCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          430 GDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       430 g~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                          ...++.+.|+....+    +++|++++++++++++
T Consensus       407 ----~~~~~~lli~~TE~~----tkeeiD~~v~al~eil  437 (437)
T d1wyua1         407 ----EYGENLALFAATELH----EEEDLLALREALKEVL  437 (437)
T ss_dssp             ----TSCSSEEEEECCTTC----CHHHHHHHHHHHHHHC
T ss_pred             ----CCCCCeEEEecCCCC----CHHHHHHHHHHHHHhC
Confidence                223567888866544    5899999999998764

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=99.38  E-value=1e-10  Score=120.88  Aligned_cols=296  Identities=15%  Similarity=0.137  Sum_probs=184.6

Q ss_pred             HHHHHHHHcCCCCCCCceeeecCChHHHHHH-HHHhh---CCCC----CEEEEcCCCCCccccccccccccccccccceE
Q 010008          144 CQKRALAAFNLDENKWGVNVQPLSGSPANFE-VYTAI---LKPH----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYF  215 (520)
Q Consensus       144 a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~-~l~al---l~pG----D~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~  215 (520)
                      -+..+++++|.+.    +|..+..|++|... ++++.   -+.|    ..++...+.+..... .      .....+  .
T Consensus       111 fQtmi~eLTGMdv----aNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~--~  177 (471)
T d1wyub1         111 LGEYLKALTGMDA----ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNP-A------TASMAG--Y  177 (471)
T ss_dssp             HHHHHHHHHTCSE----EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHH-H------HHHHTT--C
T ss_pred             HHHHHHHHhCCCc----cccccchHHHHHHHHHHHHHHHhhhcccccccccccCCccccccee-e------eeeccc--c
Confidence            3478999999996    68888999855443 33332   1122    223333332221110 0      111122  2


Q ss_pred             EEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCC--CCHHHHHHHHHHhCCEEEEechhhcccccccccCCCC
Q 010008          216 ESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRD--FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF  293 (520)
Q Consensus       216 ~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~s~~p~~--~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~~p~  293 (520)
                      ..+.++.+ ..+..|.+.+...... +...+++..|++.+.  .+.+.+.++++++|..+++|.+....+.  ++.+.+-
T Consensus       178 ~~~~~~~~-~~~~~~~~~~~~~~~~-~~a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~~~~--~l~~p~~  253 (471)
T d1wyub1         178 QVREIPSG-PEGEVDLEALKRELGP-HVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIM--GWARPGD  253 (471)
T ss_dssp             EEEEECBC-TTSSBCHHHHHHHCST-TEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTT--TTCCHHH
T ss_pred             eeeccccc-ccccccchhhhhhhhc-cccceeeccCCCcccccchhhhhHHHHHhccccccccccchhhhh--hccccCc
Confidence            55555544 4578899999888766 677888888887763  3588999999999999999976432221  1111111


Q ss_pred             CcccEEEeccCccc------CCCCceEEEeeCCCcchhhHHHhhcccC------------------CCCCCCCChHHHHH
Q 010008          294 KYCDVVTTTTHKSL------RGPRGGMIFFKKDPVLGVELESAINNAV------------------FPGLQGGPHNHTIG  349 (520)
Q Consensus       294 ~~aDiv~~S~hK~l------~GprgG~I~~~~~~~~~~~l~~~i~~~~------------------~p~~~g~p~~~~ia  349 (520)
                      .++|+++...|++|      +||..|++.+++      ++.+++--.+                  -.-..++.  ..+.
T Consensus       254 ~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~------~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actn--qaL~  325 (471)
T d1wyub1         254 MGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKA------HLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYG--NFLA  325 (471)
T ss_dssp             HTCSEEECCTTTTTCCCCTTSCCCCCCEEECG------GGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTS--CHHH
T ss_pred             ccccccccccccccccccccccccccceeehh------hhhccCCCceecCCCccccccCCCcccccchhhhhh--hHHH
Confidence            26899988889975      456568988887      3433321000                  00001111  1222


Q ss_pred             HHH--HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCC
Q 010008          350 GLA--VCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNS  427 (520)
Q Consensus       350 ala--~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~  427 (520)
                      |++  +.+..+...++++..++...++.++++.|...|+++..++..-+-+.+++ +.+++..++.+.|.+.||..-...
T Consensus       326 al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~~G~~~~~~~~ff~EFvv~~-~~~~~~~~i~k~L~~~G~~~~~~~  404 (471)
T d1wyub1         326 LVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPSMHEFVAQP-PEGFRALDLAKGLLELGFHPPTVY  404 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSSCCSCEEEBC-STTCCHHHHHHHHHHTTCCCCEES
T ss_pred             HHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhhcCceeccCcceeeEEeecC-CCCCCHHHHHHHHHHcCCCCCccc
Confidence            222  23444555678999999999999999999889999876543333445555 456777888888888888542222


Q ss_pred             CCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHHHHH
Q 010008          428 VPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLE  473 (520)
Q Consensus       428 ~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~~~~  473 (520)
                      .|    ....+.+-|+....+    +++|++++++.++++++...+
T Consensus       405 ~p----~~~~~~llv~vTE~~----tkedID~lv~aL~~i~~e~~~  442 (471)
T d1wyub1         405 FP----LIVKEALMVEPTETE----AKETLEAFAEAMGALLKKPKE  442 (471)
T ss_dssp             CS----TTSTTCEEECCCTTS----CHHHHHHHHHHHHHHHTSCHH
T ss_pred             Cc----CCCCCeEEEecCCCC----CHHHHHHHHHHHHHHHHhhHH
Confidence            23    223567888766555    489999999999999886643

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.1e-11  Score=122.33  Aligned_cols=312  Identities=15%  Similarity=0.119  Sum_probs=176.6

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC---
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---  180 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all---  180 (520)
                      +-.|.|.+|+.+.+.+ +..  ....++  ++...+++    +++.++.+.+.     ....+||++|+..++....   
T Consensus        57 h~~p~i~~Av~~q~~~-~~~--~~~~~~--~~~~~~~~----~~~~~~~~~~~-----v~~~~sGseA~e~Aik~ar~~~  122 (404)
T d2byla1          57 HCHPKIVNALKSQVDK-LTL--TSRAFY--NNVLGEYE----EYITKLFNYHK-----VLPMNTGVEAGETACKLARKWG  122 (404)
T ss_dssp             BTCHHHHHHHHHHHTT-CCC--CCTTEE--ESSHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhh-CCC--cccccc--cchHHHHH----Hhhhhcccccc-----cccccCccccchhHHHHHHHHh
Confidence            4578899998887753 211  111111  22233333    56777777753     2446899999998876431   


Q ss_pred             ------CC-CCEEEEcCCCCCccccccccccccccccccc-----eE-----EEEEcccCCCCCCCCHHHHHHHhhhcCC
Q 010008          181 ------KP-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-----YF-----ESMPYRLDESTGLVDYDMLEKTAILFRP  243 (520)
Q Consensus       181 ------~p-GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~-----~~-----~~v~~~~d~~~~~iD~d~le~~i~~~~p  243 (520)
                            .. ..+++...-.+.|.-. +      .+...+.     .+     ....++      ..|.+++++++...+.
T Consensus       123 ~~~~~~~~~~~~i~~~~~~~hg~t~-~------~~~~~~~~~~~~~~~p~~~~~~~~p------~~d~~~l~~~l~~~~i  189 (404)
T d2byla1         123 YTVKGIQKYKAKIVFAAGNFWGRTL-S------AISSSTDPTSYDGFGPFMPGFDIIP------YNDLPALERALQDPNV  189 (404)
T ss_dssp             HHTTCCCTTCCEEEEETTCCCCCSH-H------HHTTCCCHHHHTTSCSCCTTEEEEC------TTCHHHHHHHHTSTTE
T ss_pred             hhccccccccccccccCCCcccccc-c------eeccCCCcccccCCCCCCCCeeEec------ccCHHHHHHhcCCCCe
Confidence                  12 2466655543322110 0      0111100     00     011111      3478999999876455


Q ss_pred             cEEEEcCC--CCCCC----CCHHHHHHHHHHhCCEEEEechhhccccccccc-C-CCCC-cccEEEeccCcccCC--CCc
Q 010008          244 KLIIAGAS--AYPRD----FDYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG--PRG  312 (520)
Q Consensus       244 klIi~~~s--~~p~~----~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~-~-~p~~-~aDiv~~S~hK~l~G--prg  312 (520)
                      -+||+..-  +.+..    --+++|+++|+++|++||+|+.+ .|+--.+.. . .-+. ..|+++++  |.|.|  ...
T Consensus       190 AaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~-tGfgR~G~~~a~~~~gv~PDi~~~g--K~l~gG~~p~  266 (404)
T d2byla1         190 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQ-TGLARTGRWLAVDYENVRPDIVLLG--KALSGGLYPV  266 (404)
T ss_dssp             EEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTT-TTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSSCC
T ss_pred             EEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccc-cccccccccchhhhcCCCCCEEEEC--chhhCCCccc
Confidence            66777521  22212    22899999999999999999986 343211110 0 0011 25998666  99854  466


Q ss_pred             eEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecC-
Q 010008          313 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG-  391 (520)
Q Consensus       313 G~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~-  391 (520)
                      |.+++++      ++.+.+......++.++......+|+ +.|+.+.++.   ..+++.+..+++.+.|.+..-+.+.. 
T Consensus       267 ~av~~~~------~i~~~~~~~~~~~T~~gnpl~~aaa~-a~L~~i~~~~---l~~~~~~~g~~l~~~l~~l~~~~i~~v  336 (404)
T d2byla1         267 SAVLCDD------DIMLTIKPGEHFSTYGGNPLGCRVAI-AALEVLEEEN---LAENADKLGIILRNELMKLPSDVVTAV  336 (404)
T ss_dssp             EEEEECH------HHHTTSCTTSSCCSSTTCHHHHHHHH-HHHHHHHHTT---HHHHHHHHHHHHHHHHHTSCTTTEEEE
T ss_pred             eeeeech------hhhhccCCCCCCcCCCcCHHHHHHHH-HHHHHHHhcC---chhhhhHhhHHHHHHHHhhccccceee
Confidence            8888887      67666655444444454333333333 3577765444   34555666777888887632221211 


Q ss_pred             -CCCCeeEEEEecC-CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHH
Q 010008          392 -GSDNHLVLVDLRP-MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       392 -gt~~~~~~vd~~~-~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~  469 (520)
                       |. ..+.-+++.. .......+.+.|.+.||.+..         .....||+..| ++   ++++|++++.+.|+++++
T Consensus       337 Rg~-Gl~~~i~~~~~~~~~~~~~~~~l~~~Gvl~~~---------~~~~~i~l~Pp-L~---it~~~id~~~~~l~~al~  402 (404)
T d2byla1         337 RGK-GLLNAIVIKETKDWDAWKVCLRLRDNGLLAKP---------THGDIIRFAPP-LV---IKEDELRESIEIINKTIL  402 (404)
T ss_dssp             EEE-TTEEEEEECCCSSCCHHHHHHHHHHTTEECEE---------EETTEEEECCC-TT---CCHHHHHHHHHHHHHHHH
T ss_pred             eec-ccEEEEEEecCCchhHHHHHHHHHhCCeEEec---------CCCCEEEEECC-cC---CCHHHHHHHHHHHHHHHH
Confidence             11 1223344432 234556677888899998742         12357999754 44   469999999999999886

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.36  E-value=2.7e-10  Score=116.08  Aligned_cols=317  Identities=12%  Similarity=0.074  Sum_probs=169.3

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC----
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  180 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all----  180 (520)
                      -.|.|.+|+.+.+.+. ....+   .+. ......+    .+.++++.+.+.     .....||++|+..++....    
T Consensus        56 ~~p~v~~Ai~~q~~~~-~~~~~---~~~-~~~~~~~----~~~~~~~~~~~~-----v~~~~sgs~a~~~a~k~ar~~~~  121 (404)
T d1z7da1          56 CHPNILNAMINQAKNL-TICSR---AFF-SVPLGIC----ERYLTNLLGYDK-----VLMMNTGAEANETAYKLCRKWGY  121 (404)
T ss_dssp             TCHHHHHHHHHHHTTC-SCCCT---TSE-EHHHHHH----HHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhC-CCccc---ccc-hHHHHHH----HHhhhhccccce-----eeeeccccchHHHHHHHHHHHHh
Confidence            4788999888776542 11111   111 2223333    355667777653     2446899998887665321    


Q ss_pred             ------CCCCEEEEcCCCCCccccccccccccccccccce-EEEEEcccCCCC---CCCCHHHHHHHhhhcCCcEEEEcC
Q 010008          181 ------KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDEST---GLVDYDMLEKTAILFRPKLIIAGA  250 (520)
Q Consensus       181 ------~pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~-~~~v~~~~d~~~---~~iD~d~le~~i~~~~pklIi~~~  250 (520)
                            .....++...-.+.|..     ..  .....+.. +.....+..+..   ..-+.+.++..+...+.-+||+..
T Consensus       122 ~~~~~~~~~~~~~~~~~~~hg~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EP  194 (404)
T d1z7da1         122 EVKKIPENMAKIVVCKNNFSGRT-----LG--CISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEP  194 (404)
T ss_dssp             HTSCCCTTCCEEEEETTC---------------------------------CEEEECTTCHHHHHHHHTSTTEEEEEECS
T ss_pred             hcccccccccccccccccCCCCc-----cc--ccccccccccccCCCCCCccccccccchHHHHHHHhcCCCEEEEEEEE
Confidence                  12235666543322211     10  01111110 011111111000   123567777766554556777752


Q ss_pred             C-CCCC-CCC----HHHHHHHHHHhCCEEEEechhhccccccccc--CCCCC-cccEEEeccCcccCC--CCceEEEeeC
Q 010008          251 S-AYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSLRG--PRGGMIFFKK  319 (520)
Q Consensus       251 s-~~p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~--~~p~~-~aDiv~~S~hK~l~G--prgG~I~~~~  319 (520)
                      - ...+ ..+    +++|+++|+++|+++|+|+.|. |+--.+..  ..-+. ..|+++.+  |.+.|  ...|.+++++
T Consensus       195 i~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~t-GfgRtG~~~~~e~~gv~PDivt~g--K~l~gG~~p~~~v~~~~  271 (404)
T d1z7da1         195 IQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-GLGRTGKLLCVHHYNVKPDVILLG--KALSGGHYPISAVLAND  271 (404)
T ss_dssp             SBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSSCCEEEEECH
T ss_pred             EcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCcc-CCCcccccccccccCCCCCEEEEc--ccccCCCCCcccccchH
Confidence            1 2222 222    8999999999999999999974 54222210  00011 36999766  99954  5678888888


Q ss_pred             CCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH----CCCE-EecCCCC
Q 010008          320 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGYK-LVSGGSD  394 (520)
Q Consensus       320 ~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~----~G~~-v~~~gt~  394 (520)
                            ++.+.+......++.++......||++ .|+.+.+..+   .+++.+..+.+.+.|.+    .++. -+.+ . 
T Consensus       272 ------~i~~~~~~~~~~~T~~gnpl~~aaa~a-~L~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg-~-  339 (404)
T d1z7da1         272 ------DIMLVIKPGEHGSTYGGNPLAASICVE-ALNVLINEKL---CENAEKLGGPFLENLKRELKDSKIVRDVRG-K-  339 (404)
T ss_dssp             ------HHHTTCCTTCCCCTTTTCHHHHHHHHH-HHHHHHHTTH---HHHHHHHHHHHHHHHHHHHTTCTTEEEEEE-E-
T ss_pred             ------HHHccCCCCCcCcCCCCCcchhhhhhh-hhhhhhcchh---hhhhccchhHHHHHHHHHHhcCCCeEEEEe-e-
Confidence                  677766655444444554444444443 4665544333   33444444444444433    3321 1111 1 


Q ss_pred             CeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHHHH
Q 010008          395 NHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEI  470 (520)
Q Consensus       395 ~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l~~  470 (520)
                      ..+..+++.....+..++.+.|.+.||.+.    |     .....||+. |.++   ++++|++++.+.|+++++.
T Consensus       340 Gl~~~i~~~~~~~~~~~~~~~l~~~Gl~~~----~-----~~~~~ir~~-Ppl~---it~~~id~~~~~l~~alk~  402 (404)
T d1z7da1         340 GLLCAIEFKNELVNVLDICLKLKENGLITR----D-----VHDKTIRLT-PPLC---ITKEQLDECTEIIVKTVKF  402 (404)
T ss_dssp             TTEEEEEECTTTCCHHHHHHHHHHTTEECC----E-----ETTTEEEEC-CCTT---CCHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEEcCCcccHHHHHHHHHhCCeEEe----c-----CCCCEEEEE-CCcC---CCHHHHHHHHHHHHHHHHh
Confidence            123445665544556678888889999873    2     124679996 4454   5799999999999999864

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.29  E-value=2.9e-10  Score=115.21  Aligned_cols=309  Identities=15%  Similarity=0.152  Sum_probs=170.3

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh--CCC
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP  182 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al--l~p  182 (520)
                      -.|.|.+|+...+.+...  .+. . + .++...   +++ +++.+...-..+   .....+||++|+..++...  ...
T Consensus        54 ~hp~v~~a~~~~~~~~~~--~~~-~-~-~~~~~~---~la-~~l~~~~~~~~~---~v~f~~sGseA~e~Aik~Ar~~t~  121 (387)
T d1vefa1          54 GNPEVVEAVKRQAETLMA--MPQ-T-L-PTPMRG---EFY-RTLTAILPPELN---RVFPVNSGTEANEAALKFARAHTG  121 (387)
T ss_dssp             TCHHHHHHHHHHHHHCCC--CCT-T-S-CCHHHH---HHH-HHHHHTSCTTEE---EEEEESSHHHHHHHHHHHHHHHHS
T ss_pred             CcHHHHHHHHHHHHhhcc--ccc-c-c-CCchHH---HHH-HHhhhhccccce---eeccccCchHHHHHHHHHHHhhcc
Confidence            368888888877765321  111 1 1 122222   222 233333322211   1244679999999887653  223


Q ss_pred             CCEEEEcCCCCCccccccccccccccccccc-----eE-----EEEEcccCCCCCCCCHHHHHHHhhhcCCcEEEEcC--
Q 010008          183 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-----YF-----ESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA--  250 (520)
Q Consensus       183 GD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~-----~~-----~~v~~~~d~~~~~iD~d~le~~i~~~~pklIi~~~--  250 (520)
                      ..+|+...-.|.|.....       ..+.+.     .+     .+..++      .-|.+.|++.+.+ +.-+||+..  
T Consensus       122 r~~ii~~~~~yHG~t~~~-------~~~s~~~~~~~~~~p~~~~~~~~p------~~d~~~l~~~~~~-~iAavi~EPi~  187 (387)
T d1vefa1         122 RKKFVAAMRGFSGRTMGS-------LSVTWEPKYREPFLPLVEPVEFIP------YNDVEALKRAVDE-ETAAVILEPVQ  187 (387)
T ss_dssp             CCEEEEETTCCCCSSHHH-------HHTCCCHHHHGGGCSCSSCEEEEC------TTCHHHHHHHCCT-TEEEEEECSEE
T ss_pred             cceecccccCCCCCccce-------EeccCCccccCCCCCCCCCceEeC------CCCHHHHHHhcCC-CeEEEEEECCC
Confidence            467887775543331111       111110     00     111222      2378999998876 677777752  


Q ss_pred             CCCCCC-CC---HHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEeccCcccCC-CCceEEEeeCCCc
Q 010008          251 SAYPRD-FD---YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKDPV  322 (520)
Q Consensus       251 s~~p~~-~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S~hK~l~G-prgG~I~~~~~~~  322 (520)
                      .+.+.. .+   +++++++|+++|+++|.|+.+. |+--.|..-  .-+. ..|+++.+  |.+.| -..+.++..+   
T Consensus       188 g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-GfgR~G~~~~~~~~~v~PDi~~~g--K~l~gG~~~~~~~~~~---  261 (387)
T d1vefa1         188 GEGGVRPATPEFLRAAREITQEKGALLILDEIQT-GMGRTGKRFAFEHFGIVPDILTLA--KALGGGVPLGVAVMRE---  261 (387)
T ss_dssp             TTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSTHHHHTCCCSEEEEC--GGGGTTSSCEEEEEEH---
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCceEEeccccc-ccCccCCCcccccCCcCCceeeec--ccCCCCccccccccce---
Confidence            222222 22   8899999999999999999963 431111100  0001 36999888  99854 3335555655   


Q ss_pred             chhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHCCCEEecC--CCCCeeEEE
Q 010008          323 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSG--GSDNHLVLV  400 (520)
Q Consensus       323 ~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~G~~v~~~--gt~~~~~~v  400 (520)
                         +..+.+......++.++......+|++ .|+.+.+.+   ..+++.+..+++.+.|++..-+.+..  +. ..+.-+
T Consensus       262 ---~~~~~~~~~~~g~T~~gnPla~aaa~a-~L~~l~~~~---~~~~v~~~g~~l~~~L~~l~~~~v~~vrg~-Gl~~~i  333 (387)
T d1vefa1         262 ---EVARSMPKGGHGTTFGGNPLAMAAGVA-AIRYLERTR---LWERAAELGPWFMEKLRAIPSPKIREVRGM-GLMVGL  333 (387)
T ss_dssp             ---HHHHTSCTTSSCCSSTTCHHHHHHHHH-HHHHHHHHT---THHHHHHHHHHHHHHHHTSCCTTEEEEEEE-TTEEEE
T ss_pred             ---eeeeccccCCccccCCCCcchhhhccc-chhhccccc---ccchHhhhhHHHHHHHHhcCCCceEEEeec-ceEEEE
Confidence               455554444333444443343444443 566665433   35666677788888887632211111  11 123345


Q ss_pred             EecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          401 DLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       401 d~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      ++...  ....+.+.+.+.|+.+..   +      .+..||+..| ++   ++++|++++.+.|++++
T Consensus       334 e~~~~--~~~~~~~~~~~~g~l~~~---~------g~~~ir~~Pp-l~---it~~~ld~~~~~i~~aL  386 (387)
T d1vefa1         334 ELKEK--AAPYIARLEKEHRVLALQ---A------GPTVIRFLPP-LV---IEKEDLERVVEAVRAVL  386 (387)
T ss_dssp             EESSC--SHHHHHHHHHHHCEECEE---S------STTEEEECCC-TT---CCHHHHHHHHHHHHHHH
T ss_pred             EEeCC--chHHHHHHHHHCCCeEEe---c------CCCEEEEECC-cc---CCHHHHHHHHHHHHHHh
Confidence            66533  345677777788887632   1      2457999744 43   57999999999999876

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.20  E-value=4.1e-09  Score=107.94  Aligned_cols=314  Identities=16%  Similarity=0.096  Sum_probs=163.4

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh--CC
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK  181 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al--l~  181 (520)
                      +-.|.|.+|+...+.+.. ..      ......    +....+++.++++-.. .   .....||++|+.+++...  ..
T Consensus        68 h~hp~i~~ai~~~~~~~~-~~------~~~~~~----~~~la~~~~~~~~~~~-~---v~f~~sGseA~e~Alk~ar~~t  132 (427)
T d2gsaa_          68 HAHPEVIEALKVAMEKGT-SF------GAPCAL----ENVLAEMVNDAVPSIE-M---VRFVNSGTEACMAVLRLMRAYT  132 (427)
T ss_dssp             BTCHHHHHHHHHHHTTCS-CC------SSCCHH----HHHHHHHHHHHSTTCS-E---EEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhcC-cc------ccchhH----HHHHHHHHHhhCCccc-c---ccccCCcHHHHHHHHHHHHHhc
Confidence            347899999888775421 11      111222    2223356666665332 1   234579999999888743  22


Q ss_pred             CCCEEEEcCCCCCccccccccccccccccccceEEEE--------EcccCCC---CCCCCHHHHHHHhhhc--CCcEEEE
Q 010008          182 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESM--------PYRLDES---TGLVDYDMLEKTAILF--RPKLIIA  248 (520)
Q Consensus       182 pGD~Vl~~~~~~~ghls~g~~~~~~~v~~~g~~~~~v--------~~~~d~~---~~~iD~d~le~~i~~~--~pklIi~  248 (520)
                      -..+|+..+-.|-|.- .+      .+...|......        ..+..++   ...-|.+.+++++.++  +..+||+
T Consensus       133 ~r~~ii~~~~~yHG~t-~~------~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~iaavi~  205 (427)
T d2gsaa_         133 GRDKIIKFEGCYHGHA-DM------FLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVIL  205 (427)
T ss_dssp             CCCEEEEETTCCCCSC-GG------GCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECTTCHHHHHHHHTTSTTTEEEEEE
T ss_pred             CCCeEEEEecccccCc-ce------eeeecCCcccccCCCCCCCCcccCccceeccCcchHHHHHHHHHhCCCCeEEEEE
Confidence            3467887766553321 11      111111000000        0000000   0235889999999863  3346676


Q ss_pred             cC-CCCCC-CCC----HHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEeccCcccCC-CCceEEEee
Q 010008          249 GA-SAYPR-DFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG-PRGGMIFFK  318 (520)
Q Consensus       249 ~~-s~~p~-~~d----~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S~hK~l~G-prgG~I~~~  318 (520)
                      .. ....+ ..+    +++|+++|+++|++||+|+.| .|+ ..+..-  .-+. ..|+++.+  |.+.| -..|.++++
T Consensus       206 Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~-tG~-r~g~~~~~~~~gi~PDi~~~g--K~lggG~p~~a~~~~  281 (427)
T d2gsaa_         206 EPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVM-TGF-RIAYGGVQEKFGVTPDLTTLG--KIIGGGLPVGAYGGK  281 (427)
T ss_dssp             CSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTT-TBT-TTBTTCHHHHTTCCCSEEEEC--GGGGTTSCCEEEEEC
T ss_pred             cCCcCCCCCccCCHHHHHHHHHHHHHhceeeeecccc-ccc-eecccchHHhcCCCHHHHhhh--hccCCCcceeeeeeh
Confidence            52 12222 333    899999999999999999997 454 222110  0011 36999888  88744 334667777


Q ss_pred             CCCcchhhHHHhhccc--CCC-CCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH----CCCEEecC
Q 010008          319 KDPVLGVELESAINNA--VFP-GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGYKLVSG  391 (520)
Q Consensus       319 ~~~~~~~~l~~~i~~~--~~p-~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~----~G~~v~~~  391 (520)
                      +      ++.+.+...  .+. ++.++... .+++..++|+.+.++++   .+++.++.++|.+.|++    .++.....
T Consensus       282 ~------~i~~~~~~~~~~~~~~T~~gnpl-a~AAala~Le~i~~~~l---~~~~~~~g~~l~~~L~~l~~~~~~~~~v~  351 (427)
T d2gsaa_         282 R------EIMQLVAPAGPMYQAGTLSGNPL-AMTAGIKTLELLRQPGT---YEYLDQITKRLSDGLLAIAQETGHAACGG  351 (427)
T ss_dssp             H------HHHTTBTTTSSBCCCCTTTTCHH-HHHHHHHHHHHHTSTTH---HHHHHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred             H------HHHHHhcccCCCcCCCCCCCCch-hhHHHHHhhHHhhhhhH---HhhhhHHHHHHHHHHHHHHhhcCCCcEEc
Confidence            7      666655431  111 22344333 34433346777766543   45555556666666643    34322211


Q ss_pred             CCCCeeEEEEecCC---------CCCH---HHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHH
Q 010008          392 GSDNHLVLVDLRPM---------GIDG---ARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVA  459 (520)
Q Consensus       392 gt~~~~~~vd~~~~---------g~~~---~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~  459 (520)
                      +... +..+.+...         ..+.   ..+...|.+.||.+.    |+..     ..+-++   +   -++++|+++
T Consensus       352 ~~gg-m~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~Gv~l~----p~~~-----~~~~~~---l---~~Te~dId~  415 (427)
T d2gsaa_         352 QVSG-MFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLA----PSQF-----EAGFTS---L---AHTEEDIDA  415 (427)
T ss_dssp             EETT-EEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECC----SSTT-----SCEECC---T---TCCHHHHHH
T ss_pred             ccCC-eEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHHCCEEEC----CCCC-----cceeCC---C---CCCHHHHHH
Confidence            1111 222222111         0122   234455678899873    3211     111122   2   267999999


Q ss_pred             HHHHHHHHHH
Q 010008          460 IADFIHEGVE  469 (520)
Q Consensus       460 la~~i~~~l~  469 (520)
                      +.++++++++
T Consensus       416 ~l~al~~al~  425 (427)
T d2gsaa_         416 TLAAARTVMS  425 (427)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9999998875

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=1.2e-08  Score=104.34  Aligned_cols=333  Identities=15%  Similarity=0.033  Sum_probs=167.4

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh--CC
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK  181 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al--l~  181 (520)
                      .-+|.|.+|+...+.+ +....+.   ...++..   . ...+++.+++.-+..+  ......|||+|+..++...  ..
T Consensus        56 h~~p~i~~ai~~q~~~-~~~~~~~---~~~~~~~---~-~la~~l~~~~p~~~~~--~v~f~~sGseA~e~Alk~ar~~t  125 (425)
T d1sffa_          56 HLHPKVVAAVEAQLKK-LSHTCFQ---VLAYEPY---L-ELCEIMNQKVPGDFAK--KTLLVTTGSEAVENAVKIARAAT  125 (425)
T ss_dssp             BTCHHHHHHHHHHTTT-CSCCCTT---TEECHHH---H-HHHHHHHHHSSCSSCE--EEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHhh-cCCcccc---cccCcHH---H-HHHHHHHhhhhhcccc--eeeeeccccchhhhHHHHhhhhh
Confidence            3578999998877643 2221111   1112212   2 2335777777543211  1234589999999877643  22


Q ss_pred             CCCEEEEcCCCCCccccc-----cccccc-cccccccceEEEEEcccCCCCCC-CC-HHHHHHHhh----hcCCcEEEEc
Q 010008          182 PHDRIMGLDLPHGGHLSH-----GFMTPK-RRVSGTSIYFESMPYRLDESTGL-VD-YDMLEKTAI----LFRPKLIIAG  249 (520)
Q Consensus       182 pGD~Vl~~~~~~~ghls~-----g~~~~~-~~v~~~g~~~~~v~~~~d~~~~~-iD-~d~le~~i~----~~~pklIi~~  249 (520)
                      -..+|+...-.|.|....     +..... .............+++....... .+ .+..++...    ..+..+||+.
T Consensus       126 ~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~E  205 (425)
T d1sffa_         126 KRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIE  205 (425)
T ss_dssp             TCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEEC
T ss_pred             cccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEec
Confidence            346788776554332110     000000 00000011111222222111111 00 111111111    1234567765


Q ss_pred             CC--CCCC-CC---CHHHHHHHHHHhCCEEEEechhhccccccccc--CCCCC-cccEEEeccCcccC-CCCceEEEeeC
Q 010008          250 AS--AYPR-DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSLR-GPRGGMIFFKK  319 (520)
Q Consensus       250 ~s--~~p~-~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~--~~p~~-~aDiv~~S~hK~l~-GprgG~I~~~~  319 (520)
                      .-  +.+. ..   -+++|+++|+++|++||+|+.+. |+--.+..  ..-+. ..|+++.+  |.|. |...|.+++++
T Consensus       206 Pi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~t-G~gR~g~~~a~~~~gv~PDi~~~g--K~l~gG~P~~av~~~~  282 (425)
T d1sffa_         206 PVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQS-GAGRTGTLFAMEQMGVAPDLTTFA--KSIAGGFPLAGVTGRA  282 (425)
T ss_dssp             SBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTSCCSEEEEC--GGGGTSSCCEEEEEEH
T ss_pred             CccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccc-cCCCcchhhHHHhcCCCccceecc--cccCCCcceEEEEEcH
Confidence            21  2222 22   37899999999999999999965 43211110  01111 36999877  9995 44458888888


Q ss_pred             CCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH----CCCEEecCCCCC
Q 010008          320 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVE----LGYKLVSGGSDN  395 (520)
Q Consensus       320 ~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~----~G~~v~~~gt~~  395 (520)
                            ++.+.+......++.++......||+ .+|+.+.+..+   .+++.+..+++.+.|++    .++.....|. .
T Consensus       283 ------~i~~~~~~~~~~~T~~gnpl~~aaa~-a~L~~i~~~~~---~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~-G  351 (425)
T d1sffa_         283 ------EVMDAVAPGGLGGTYAGNPIACVAAL-EVLKVFEQENL---LQKANDLGQKLKDGLLAIAEKHPEIGDVRGL-G  351 (425)
T ss_dssp             ------HHHTTSCTTSBCCSSSSCHHHHHHHH-HHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHTCTTEEEEEEE-T
T ss_pred             ------HHHHhhCCCCCCCCCCcCHHHHHHHH-HHHHHHHHhhh---hhhhhhhhhhhhhhhhhhHhhCCceEEEEcc-c
Confidence                  66666654444444455344343443 36777655444   34444445555555543    3331111111 1


Q ss_pred             eeEEEEecCC---C-CC---HHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHHHH
Q 010008          396 HLVLVDLRPM---G-ID---GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV  468 (520)
Q Consensus       396 ~~~~vd~~~~---g-~~---~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~~l  468 (520)
                      .+.-+++...   . .+   ...+.+.|.+.||.+...    .   .....||+..| ++   ++++|++++.+++++++
T Consensus       352 l~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~----g---~~~n~i~~~Pp-L~---it~~eid~~l~~l~~al  420 (425)
T d1sffa_         352 AMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSC----G---PYYNVLRILVP-LT---IEDAQIRQGLEIISQCF  420 (425)
T ss_dssp             TEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEE----S---TTSCEEEECCC-TT---CCHHHHHHHHHHHHHHH
T ss_pred             cEEEEEEeccCccCCccHHHHHHHHHHHHHCCCEEecc----C---CCCCEEEEECC-CC---CCHHHHHHHHHHHHHHH
Confidence            2333444211   1 12   234666778899987432    1   12457999755 43   67999999999999988


Q ss_pred             HHH
Q 010008          469 EIT  471 (520)
Q Consensus       469 ~~~  471 (520)
                      +..
T Consensus       421 ~ei  423 (425)
T d1sffa_         421 DEA  423 (425)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            753

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=7.5e-08  Score=98.34  Aligned_cols=326  Identities=15%  Similarity=0.104  Sum_probs=172.7

Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhhC----
Q 010008          105 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----  180 (520)
Q Consensus       105 ~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~all----  180 (520)
                      -+|.|.+|+...+.. .....++ .+.  .   +...+++ +++.+......+.   ....+||++|+..++....    
T Consensus        60 ~~p~i~~Ai~~q~~~-~~~~~~~-~~~--~---~~~~~l~-~~l~~~~~~~~~~---v~f~~sGseA~e~A~k~ar~~~~  128 (429)
T d1s0aa_          60 NHPQLNAAMKSQIDA-MSHVMFG-GIT--H---APAIELC-RKLVAMTPQPLEC---VFLADSGSVAVEVAMKMALQYWQ  128 (429)
T ss_dssp             SCHHHHHHHHHHHHH-CSCCCCS-SEE--C---HHHHHHH-HHHHHHSCTTCCE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHh-cCCcccC-Ccc--c---hHHHHHH-HHHHhhhccCcce---eeeccccccchhhhhhhhhheee
Confidence            478899988876643 2221111 111  1   1222233 4566666554331   2346899999987775431    


Q ss_pred             ---CCCCEEEEcCCCCCccccccc-cc----ccccc-ccccceEEEEEcccCCCCC---CCCHHHHHHHhhhc--CCcEE
Q 010008          181 ---KPHDRIMGLDLPHGGHLSHGF-MT----PKRRV-SGTSIYFESMPYRLDESTG---LVDYDMLEKTAILF--RPKLI  246 (520)
Q Consensus       181 ---~pGD~Vl~~~~~~~ghls~g~-~~----~~~~v-~~~g~~~~~v~~~~d~~~~---~iD~d~le~~i~~~--~pklI  246 (520)
                         .+..+|+...-.|.|...... .+    ..... ..........+.+......   .-+.+++++.+...  +..+|
T Consensus       129 ~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaav  208 (429)
T d1s0aa_         129 AKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAV  208 (429)
T ss_dssp             HHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEE
T ss_pred             cccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhhhhhhhcCCcccee
Confidence               344688888765433210000 00    00000 0000000111111111112   23455555555442  34566


Q ss_pred             EEcCC--CCCC--CC---CHHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEeccCcccC-C-CCceE
Q 010008          247 IAGAS--AYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-G-PRGGM  314 (520)
Q Consensus       247 i~~~s--~~p~--~~---d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S~hK~l~-G-prgG~  314 (520)
                      |+...  +.+.  ..   -+++|+++|+++|+++|+|+.+. |+--.+..-  ..+. -.|+++.+  |.+. | ...|.
T Consensus       209 ivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~t-GfGRtG~~~~~~~~~v~PDi~~~g--K~l~gG~~p~~a  285 (429)
T d1s0aa_         209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT-GFGRTGKLFACEHAEIAPDILCLG--KALTGGTMTLSA  285 (429)
T ss_dssp             EECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGGTSSSCCEE
T ss_pred             eecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccc-cccccccccccccceecccccccc--cccccccccccc
Confidence            66532  2222  22   28899999999999999999864 432111100  0011 36899887  9883 3 45688


Q ss_pred             EEeeCCCcchhhHHHhhccc-----CCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHC-CCEE
Q 010008          315 IFFKKDPVLGVELESAINNA-----VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVEL-GYKL  388 (520)
Q Consensus       315 I~~~~~~~~~~~l~~~i~~~-----~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~~~-G~~v  388 (520)
                      +++++      ++.+.+...     ....+.++... .+++....|+.+.+++   ..+++.+..++|.+.|.+. ....
T Consensus       286 v~~~~------~i~~~~~~~~~~~~~~~~T~~gnp~-~~aaa~a~L~~i~~~~---~~~~~~~~g~~l~~~L~~l~~~~~  355 (429)
T d1s0aa_         286 TLTTR------EVAETISNGEAGCFMHGPTFMGNPL-ACAAANASLAILESGD---WQQQVADIEVQLREQLAPARDAEM  355 (429)
T ss_dssp             EEECH------HHHHHHHTSTTSSCSCCCTTTTCHH-HHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHGGGGGCTT
T ss_pred             hhhHH------HHHhccCCCCCcceeecCCCCCCcc-cchhhhcccccccccc---ccchhhHHHHHHHHHHHHhccCCc
Confidence            88887      666655321     11223334333 3433334677776644   4556666677888888652 1111


Q ss_pred             ec--CCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHHHHHHHHH
Q 010008          389 VS--GGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE  466 (520)
Q Consensus       389 ~~--~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~la~~i~~  466 (520)
                      +.  .|. ..+..+++... .+...+.+.|.+.|+.+..    .      ...||+..| ++   ++++|++++.++|++
T Consensus       356 v~~vrg~-Gl~~~~e~~~~-~~~~~~~~~~~~~Gl~~~~----~------g~~i~~~Pp-l~---it~~eid~~~~~l~~  419 (429)
T d1s0aa_         356 VADVRVL-GAIGVVETTHP-VNMAALQKFFVEQGVWIRP----F------GKLIYLMPP-YI---ILPQQLQRLTAAVNR  419 (429)
T ss_dssp             EEEEEEE-TTEEEEEESSC-BCHHHHHHHHHHTTEECCC----B------TTEEEECCC-TT---CCHHHHHHHHHHHHH
T ss_pred             eEEEeec-ccEEEEEecCc-ccHHHHHHHHHHCCcEEEe----c------CCEEEEeCC-cC---CCHHHHHHHHHHHHH
Confidence            11  111 12334566432 3567788889999999832    1      247999754 44   479999999999998


Q ss_pred             HHHH
Q 010008          467 GVEI  470 (520)
Q Consensus       467 ~l~~  470 (520)
                      +++.
T Consensus       420 al~e  423 (429)
T d1s0aa_         420 AVQD  423 (429)
T ss_dssp             HTSS
T ss_pred             HHHh
Confidence            8753

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=98.98  E-value=7.9e-08  Score=98.28  Aligned_cols=329  Identities=16%  Similarity=0.112  Sum_probs=157.9

Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCCCCCceeeecCChHHHHHHHHHhh--CC
Q 010008          104 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK  181 (520)
Q Consensus       104 ~~~~~V~ea~~s~l~~~y~~G~p~~ryy~g~~~~d~lE~~a~~~~~~lfg~~~~~~~~~V~~~sGs~A~~~~l~al--l~  181 (520)
                      .-.|.|.+|+...+.. +.....  .+.  ++   ...+++ +++.+++.-..+.   ....+|||+|+..++...  ..
T Consensus        57 h~~p~v~~ai~~q~~~-~~~~~~--~~~--~~---~~~~la-~~L~~~~~~~~~~---v~f~~sGseA~e~Alk~Ar~~t  124 (431)
T d1zoda1          57 HCHPEIVSVIGEYAGK-LDHLFS--EML--SR---PVVDLA-TRLANITPPGLDR---ALLLSTGAESNEAAIRMAKLVT  124 (431)
T ss_dssp             BTCHHHHHHHHHHHHH-CCCCCT--TCC--CH---HHHHHH-HHHHHHSCTTCCE---EEEESCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhh-cccccc--ccc--cH---HHHHHH-HHHHHhCCcccce---eeecccccchHHHHHHHHHHhc
Confidence            3468888888877753 222111  111  11   122233 4566666322221   244689999999888653  22


Q ss_pred             CCCEEEEcCCCCCcccccccc--c---cc--cccccccceEEEEEccc--CCCC----CCCCH---HHHHHHhhhc---C
Q 010008          182 PHDRIMGLDLPHGGHLSHGFM--T---PK--RRVSGTSIYFESMPYRL--DEST----GLVDY---DMLEKTAILF---R  242 (520)
Q Consensus       182 pGD~Vl~~~~~~~ghls~g~~--~---~~--~~v~~~g~~~~~v~~~~--d~~~----~~iD~---d~le~~i~~~---~  242 (520)
                      -.++|+...-.|.|.- .+..  +   ..  ......+  ...++++.  .+..    ...+.   +.+...+...   +
T Consensus       125 ~r~~i~~~~~~yHG~t-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (431)
T d1zoda1         125 GKYEIVGFAQSWHGMT-GAAASATYSAGRKGVGPAAVG--SFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGN  201 (431)
T ss_dssp             TCCEEEEETTCCCCSS-HHHHHTCCSSCCSSSCCCCTT--EEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSC
T ss_pred             CCcceeeccccccccc-chhhcccccccccccCCcccC--ceeeeeecccccccccccchhhhhhHHHHHHHHHHhcccc
Confidence            3467777765443321 0000  0   00  0000111  12222221  1110    01122   3333333222   2


Q ss_pred             CcEEEEcC--CCCCC----CCCHHHHHHHHHHhCCEEEEechhhcccccccccC--CCCC-cccEEEeccCcccC-CCCc
Q 010008          243 PKLIIAGA--SAYPR----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRG  312 (520)
Q Consensus       243 pklIi~~~--s~~p~----~~d~~~i~~ia~~~g~~li~D~Ah~~gli~~~~~~--~p~~-~aDiv~~S~hK~l~-Gprg  312 (520)
                      .-+||+..  .+.+.    ..-+++|+++|+++|++||+|+.+. |+--.|..-  .-+. ..|+++.+  |.+. |...
T Consensus       202 iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~t-G~gRtG~~~~~~~~gv~PDi~~~g--K~l~gG~p~  278 (431)
T d1zoda1         202 LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQT-GVGRTGTMFACQRDGVTPDILTLS--KTLGAGLPL  278 (431)
T ss_dssp             EEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSTHHHHTCCCSEEEEC--HHHHTTSSC
T ss_pred             ccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccc-cccccccccccccCCCCcchhccc--ccccccccc
Confidence            34566652  11222    2238999999999999999999865 432112100  0001 36999887  9884 3334


Q ss_pred             eEEEeeCCCcchhhHHHhhcccC--CCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH----HCCC
Q 010008          313 GMIFFKKDPVLGVELESAINNAV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLV----ELGY  386 (520)
Q Consensus       313 G~I~~~~~~~~~~~l~~~i~~~~--~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na~~l~~~L~----~~G~  386 (520)
                      +.+++.+      +..+......  ...+.++... ..++....++.+.++.+   .+++.+..+++.+.|.    +.++
T Consensus       279 ~av~~~~------~~~~~~~~~~~~~~~T~~g~pl-~~aaa~a~l~~i~~~~~---~~~~~~~g~~l~~~l~~~~~~~~~  348 (431)
T d1zoda1         279 AAIVTSA------AIEERAHELGYLFYTTHVSDPL-PAAVGLRVLDVVQRDGL---VARANVMGDRLRRGLLDLMERFDC  348 (431)
T ss_dssp             EEEEECH------HHHHHHHHTTCCCCCTTTTCHH-HHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             ceeeeee------cchhhhhcccccccCCCCCCcc-hHHHHHHHHHHhhhhhh---hHHHHHHHHHHhhhhhhhhhcCCC
Confidence            5555555      3433332221  1222333333 33333335665554443   3444444444444443    3343


Q ss_pred             EEecCCCCCeeEEEEec---C----CCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCccccCCCHHHHHH
Q 010008          387 KLVSGGSDNHLVLVDLR---P----MGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVA  459 (520)
Q Consensus       387 ~v~~~gt~~~~~~vd~~---~----~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~tt~g~~~~d~~~  459 (520)
                      ..-..|.. .+.-+++.   .    ...-+..+.+.|.+.|+..+.-..++     ....||+..| ++   ++++|+++
T Consensus       349 i~~vrG~G-lm~~ie~~~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~~~~~~-----~~~~i~l~Pp-l~---it~~eid~  418 (431)
T d1zoda1         349 IGDVRGRG-LLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPG-----MGGVFRIAPP-LT---VSEDEIDL  418 (431)
T ss_dssp             EEEEEEET-TEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTT-----SCCEEEECCC-TT---CCHHHHHH
T ss_pred             eEEEeecc-eEEEEEEecCCcccCccHHHHHHHHHHHHHhCcccCeeeecC-----CCCEEEEECC-CC---CCHHHHHH
Confidence            21111111 12223331   1    01113557778888998754211221     2457999755 44   56999999


Q ss_pred             HHHHHHHHHHH
Q 010008          460 IADFIHEGVEI  470 (520)
Q Consensus       460 la~~i~~~l~~  470 (520)
                      +.++++++++.
T Consensus       419 ~~~~l~~al~~  429 (431)
T d1zoda1         419 GLSLLGQAIER  429 (431)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998874

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.94  E-value=1.2e-07  Score=97.74  Aligned_cols=206  Identities=14%  Similarity=0.140  Sum_probs=113.4

Q ss_pred             HHHHHHHhhh-----cCCcEEEEcCC-CCCC--CCC---HHHHHHHHHHhCCEEEEechhhcccccccc-c---CCCCC-
Q 010008          231 YDMLEKTAIL-----FRPKLIIAGAS-AYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-V---ADPFK-  294 (520)
Q Consensus       231 ~d~le~~i~~-----~~pklIi~~~s-~~p~--~~d---~~~i~~ia~~~g~~li~D~Ah~~gli~~~~-~---~~p~~-  294 (520)
                      ++++++++..     .+.-+||+..- ...+  ..+   +++|+++|+++|++||+|+.+. |+--.|. .   ...+. 
T Consensus       232 ~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~t-G~gRtG~~~~~e~~gi~~  310 (461)
T d1ohwa_         232 LEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQT-GGGSTGKFWAHEHWGLDD  310 (461)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTT-CSSTTSSSSGGGGGCCSS
T ss_pred             HHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceecccccc-cccccccccccccccccc
Confidence            4555555532     13446777532 2222  223   8899999999999999999964 3321121 0   01111 


Q ss_pred             cccEEEeccCcccCCCCceEEEeeCCCcchhhHHHhhcccCCCCCCCCChHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010008          295 YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNC  374 (520)
Q Consensus       295 ~aDiv~~S~hK~l~GprgG~I~~~~~~~~~~~l~~~i~~~~~p~~~g~p~~~~iaala~al~~~~~~~~~~~~~~i~~na  374 (520)
                      ..|+++.+  |.+.|   |++....      .+.. .......+..++......+|+ .+|+.+.+++   ..+++.+..
T Consensus       311 ~PDiv~~g--K~l~~---g~~~~~~------~~~~-~~~~~~~~T~~g~p~~~aaa~-a~l~~i~~~~---l~~~~~~~g  374 (461)
T d1ohwa_         311 PADVMTFS--KKMMT---GGFFHKE------EFRP-NAPYRIFNTWLGDPSKNLLLA-EVINIIKRED---LLSNAAHAG  374 (461)
T ss_dssp             CCSEEEEC--GGGSS---EEEEECG------GGSC-SSTTSSCCSCSSCHHHHHHHH-HHHHHHHHTT---HHHHHHHHH
T ss_pred             Cchhhhhh--hcccc---ccccccc------cccc-ccccccccccccccccchhhc-ccchhhhhhh---HHHHHHHHH
Confidence            26898776  98753   5554443      2211 111122233333333333333 3566665433   345555566


Q ss_pred             HHHHHHHHHC-----C-CEEecCCCCCeeEEEEecCCCCCHHHHHHHHhhcCeEEcCCCCCCCCCCCCCCEEEEccCCcc
Q 010008          375 RALASRLVEL-----G-YKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMT  448 (520)
Q Consensus       375 ~~l~~~L~~~-----G-~~v~~~gt~~~~~~vd~~~~g~~~~~~~~~L~~~gI~v~~~~~Pg~~~~~~~~giRig~~~~t  448 (520)
                      ++|.+.|++.     . +.-+.+ . ..+.-+++.... ...++.+.|.+.||.+..         ..+..||+. |.++
T Consensus       375 ~~l~~~l~~l~~~~~~~i~~vrG-~-Gl~~~ie~~~~~-~~~~i~~~~~~~Gll~~~---------~~~~~ir~~-PpL~  441 (461)
T d1ohwa_         375 KVLLTGLLDLQARYPQFISRVRG-R-GTFCSFDTPDES-IRNKLISIARNKGVMLGG---------CGDKSIRFR-PTLV  441 (461)
T ss_dssp             HHHHHHHHHHHHHCTTTCEEEEE-E-TTEEEEECSSHH-HHHHHHHHHHHTTEECEE---------ETTTEEECC-CCTT
T ss_pred             HHHHHHHHHHHhhCCCceEEeee-e-eEEEEEEcCCHH-HHHHHHHHHHHCCeEEee---------CCCCEEEEe-CCcC
Confidence            6677776552     1 211111 1 123345554221 234577788889998842         124579996 4455


Q ss_pred             ccCCCHHHHHHHHHHHHHHHH
Q 010008          449 TRGFSEKEFVAIADFIHEGVE  469 (520)
Q Consensus       449 t~g~~~~d~~~la~~i~~~l~  469 (520)
                         ++++|++.+.+.|.+++.
T Consensus       442 ---it~~eid~~~~~l~~~l~  459 (461)
T d1ohwa_         442 ---FRDHHAHLFLNIFSDILA  459 (461)
T ss_dssp             ---CCHHHHHHHHHHHHHHHH
T ss_pred             ---CCHHHHHHHHHHHHHHHh
Confidence               579999999999999886