Citrus Sinensis ID: 010056

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------52
Protein Sequence
MSIRSYFGIRKSSFLLVHPELPAFTCWRPQLESLSTFGITGNHGGAIRLIARSRYSFADRNVDASVRNPSTVRLGRKQGGSSSLYSRPSILEMKNERMANRAKVYDFLQGIGIVPDELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGLQCSLSWLLNCSDEKFKERMNYDTIDLEEMDAMPSFDMNTLMEQRSDESASEYEEDSDDEYA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHHHHccccccccccHHHHHcccccccccccccccccHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccHHHHHcccccccccccccHHHHHHHHHHccccHHHHHHHHHHccccccccccccHHHHHHHHHHcccccccHHHHHHHccccccccccccHHHHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHccccHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccHHHHHHHHccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHcHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccHHHccccEEEccccccHHHHHHHHHHccccccHHHHHcccHHHHHHHHcHHcccHHHHcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccccccccccccccccccccccHHHHHcccccccccEEEEEEEEEEEcccccccccccccccEEccEccccccccccccHHHHcHHHHHccHHHHHHHHHccccHHHcHHHHccccHHHHHHHHHHHHHccccHHHHHHccHHHcccHHHccHHHHHHHHHccccHHHHHHHHHHcccEccccHHHHcHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHccHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHcHHHHHHHHHccccHHHHHHHHHHcccHHcccHHHHcHHHHHHHHHccccHHHHHHHHHHccHHHEccHHHHHHHHHHHHHHHccccHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHccccHHHHHHccHHHcccHHHHcHHHHHHHHHccccccHHHHHcccHHHHHHHHHHHcccHHHHHccccccccccccccccccHHHHHHcccHHcc
Coil and Loop (DISEMBL)
msirsyfgirkssfllvhpelpaftcwrpqleslstfgitgnhgGAIRLIARSRysfadrnvdasvrnpstvrlgrkqggssslysrpsileMKNERMANRAKVYDFLqgigivpdeldglelpvTVEVMRERVDFLHNlgltiedinnyplvlgcsvkknmipVLDYLgklgvrksTFTEFLRRYPQVLHSSVVVDLAPVVkylqgldikpndiprvlerypevlgfklegtmSTSVAYLVGIGVsrreiggvltrypdilgmrvGRVIKPFVEYLESLGIPRLAVARLIekkpyilgfgleervkpnvESLLEFSvrkealpvvvaqypeiigidlkpkllgqqsllnsaidssskdfgsIVEKMPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQREmqrplddlvvfpafftyglestikPRHKMIARKGLQCSLswllncsdekfkermnydtidleemdampsfdmntlmeqrsdesaseyeedsddeya
Flexible Loop (DISEMBL)
msirsyfgirkssfllvHPELPAFTCWRPQLESLSTFGITGNHGGAIRLIARSRYSFadrnvdasvrnpstvrlgrkqggssslysrpsILEMKNERMANRAKVYDFLQGIGIVPDELDGLELPVTVEVMRERVDFLHNLgltiedinnYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTEFLRRYPQvlhssvvvdlAPVVKYlqgldikpndiprVLERYPEVLGFKLEGTMSTSVAYLVGigvsrreiggvltrypdilgmrVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEfsvrkealpvVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGLQCSLSWLLNCSDEKFKERMNYDTIDLEEMDAMPSFDMNTLMEQrsdesaseyeedsddeya
Low Complexity Region (SEG)
MSIRSYFGIRKSSFLLVHPELPAFTCWRPQLESLSTFGITGNHGGAIRLIARSRYSFADRNVDASVRNPSTVRLGRKQGGSSSLYSRPSILEMKNERMANRAKVYDFLQGIGIVPDELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGLQCSLSWLLNCSDEKFKERMNYDTIDLEEMDAMPSFDMNTLMEQRsdesaseyeedsddeya
Disordered region (IsUnstruct)
****SYFGIRKSSFLLVHPELPAFTCWRPQLESLSTFGITGNHGGAIRLIARSRYSFADR***************************************NRAKVYDFLQGIGIVPDELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLN************IVEKMPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGLQCSLSWLLNCSDEKFKERMNYDTI*************************************
Disordered Region (DISOPRED)
*******GIRKSSFLLVHPELPAFTCWRPQLESLSTFGITGNHGGAIRLIARSRYS********************************************RAKVYDFLQGIGIVPDELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGLQCSLSWLLNCSDEKFKERMNYDTIDLEEMDAMP****************************
Disordered Region (DISEMBL)
MSIRSYFGIRKSSFLLVHPELPAFTCWRPQLESLSTFGITGNHGGAIRLIARSRYSFADRNVDASVRNPSTV***********LYSRPSILEMKNERMANRAKVYDFLQGIGIVPDELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGLQCSLSWLLNCSDEKFKERMNYDTIDLEEMDAMPSFDMNTLM********************
Disordered Region (DISPRO)
MSIRSYFGIRKSSFLLVHPELPAFTCWRPQLESLSTFGITGNHGGAIRLIARSRYSFADRNVDASVRNPSTVRLGRKQGGSSSLYSRPSILEMKNERMANRAKVYDFLQGIGIVPDELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGLQCSLSWLLNCSDEKFKERMNYDTIDLEEMDAMPSFDMN***********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSIRSYFGIRKSSFLLVHPELPAFTCWRPQLESLSTFGITGNHGGAIRLIARSRYSFADRNVDASVRNPSTVRLGRKQGGSSSLYSRPSILEMKNERMANRAKVYDFLQGIGIVPDELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGLQCSLSWLLNCSDEKFKERMNYDTIDLEEMDAMPSFDMNTLMEQRSDESASEYEEDSDDEYA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	519	2.2.26 [Sep-21-2011]
Q6P6Q6	409	mTERF domain-containing p	yes	no	0.445	0.564	0.210	2e-05
Q96E29	417	mTERF domain-containing p	yes	no	0.423	0.527	0.201	3e-05
Q5ZJC8	405	mTERF domain-containing p	yes	no	0.360	0.461	0.207	7e-05
Q8R3J4	412	mTERF domain-containing p	yes	no	0.445	0.560	0.202	0.0001

>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus norvegicus GN=Mterfd1 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 110/276 (39%), Gaps = 45/276 (16%)

Query: 187 PQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEV----LGFKLEGTMSTSVAYLV 242
           P  L SS + D     + LQ L     D+ ++ E++P+V    L    E  +   + +L 
Sbjct: 130 PLPLSSSTLADYVDHSETLQKLVQLGVDLSKI-EKHPDVANLLLRLNFEKDIKQILLFLK 188

Query: 243 GIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGL 302
            +G+   ++G  LT+   I    +   +K  V YL+S    +  +A +++  P++L F +
Sbjct: 189 DLGLEDNQLGPFLTKNYAIFSEDLEN-LKTRVAYLQSKNFSKTDIACMVKNAPFLLSFSV 247

Query: 303 EERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGS 362
           E                                     +L  +       ++ S K    
Sbjct: 248 E-------------------------------------RLDNRLGFFQKELELSVKKTRD 270

Query: 363 IVEKMPQVVNASNSAVTRHVDFLK-SCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQ 421
           +V ++P+++  S   V  ++   +   GF   +++ +V + P++L  N   +  +FDY  
Sbjct: 271 LVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMVTKIPKMLTANKRKLTETFDYVH 330

Query: 422 REMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKG 457
             M  P   +V FP  F   +   IK RH  +A  G
Sbjct: 331 NVMNIPHHIIVKFPQVFNTRV-FKIKERHLFLAYLG 365

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.
Rattus norvegicus (taxid: 10116)

>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens GN=MTERFD1 PE=1 SV=2

 Score = 50.4 bits (119), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 105/273 (38%), Gaps = 53/273 (19%)

Query: 219 LERYPE----VLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFV 274
           +E++PE    +L    E  +   + +L  +G+   ++G  LT+   I    +   +K  V
Sbjct: 169 IEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRV 227

Query: 275 EYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEII 334
            YL S    +  VA+++ K P++L F +E                               
Sbjct: 228 AYLHSKNFSKADVAQMVRKAPFLLNFSVE------------------------------- 256

Query: 335 GIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLK-SCGFFLQ 393
                 +L  +       ++ S K    +V ++P+++  S   V  ++   +   GF   
Sbjct: 257 ------RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHN 310

Query: 394 QVRQIVVECPQVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMI 453
           +++ ++   P++L  N   +  +FD+    M  P   +V FP  F   L   +K RH  +
Sbjct: 311 EIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRL-FKVKERHLFL 369

Query: 454 ARKGLQ---------CSLSWLLNCSDEKFKERM 477
              G            SL  L++  DE F E +
Sbjct: 370 TYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEI 402

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Homo sapiens (taxid: 9606)

>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus GN=MTERFD1 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 40/227 (17%)

Query: 225 VLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPR 284
           +L    E  ++  + +L  +G+   ++G  LT+ P ILG  +   ++  V YL+S     
Sbjct: 167 LLTLDFEKDITKILLFLKDVGIEDNQLGPFLTKNPYILGEEL-EALETRVAYLKSKKFGN 225

Query: 285 LAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLG 344
             + +++ + PY+L F +E                                     +L  
Sbjct: 226 AEITQMVSRAPYLLLFSVE-------------------------------------RLDN 248

Query: 345 QQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLK-SCGFFLQQVRQIVVECP 403
           +     + +  S K    +V + P+++      V  ++   +   GF   +V+QI  + P
Sbjct: 249 RLGFFKNELGLSVKKTKDLVIRFPRLLTGKLEPVKENLQVCQVEFGFERNEVQQIAFKTP 308

Query: 404 QVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRH 450
           ++L  +   ++ +FDY    M  P + L  FP  F   L   IK RH
Sbjct: 309 KILTASKKRLRQTFDYLHNIMGIPHNMLTRFPQVFNSKL-LRIKERH 354

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Gallus gallus (taxid: 9031)

>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus GN=Mterfd1 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/276 (20%), Positives = 110/276 (39%), Gaps = 45/276 (16%)

Query: 187 PQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPE----VLGFKLEGTMSTSVAYLV 242
           P  + S  + D     K LQ L     D+ ++ E++P+    +L    E  +   + +L 
Sbjct: 133 PLPISSFTLADYVDHSKTLQKLVQLGVDLSKI-EKHPDAANLLLRLDFEKHIKQILLFLK 191

Query: 243 GIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGL 302
            +G+   ++G  LT+   I    +   +K  V YL+S    +  +AR+++  P++L F +
Sbjct: 192 DLGLEDNQLGPFLTKNYAIFSEDLEN-LKTRVAYLQSKNFSKTDIARMVKNAPFLLSFSV 250

Query: 303 EERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGS 362
           E                                     +L  +       ++ + K    
Sbjct: 251 E-------------------------------------RLDNRLGFFQKELELNVKKTRD 273

Query: 363 IVEKMPQVVNASNSAVTRHVD-FLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQ 421
           +V ++P+++  S   V  ++  +    GF   +++ +V++ P++L  N   +   FDY  
Sbjct: 274 LVVRLPRLLTGSLEPVKENMKVYHLELGFKHNEIQHMVIKIPKMLTANKRKLTEIFDYVH 333

Query: 422 REMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKG 457
             M  P   +V FP  F   +   IK RH  +A  G
Sbjct: 334 NVMNIPHHIIVKFPQLFNTRV-FKIKERHLFLAYLG 368

Binds promoter DNA (By similarity). Regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	519
225436880	530	PREDICTED: uncharacterized protein LOC10	0.992	0.971	0.760	0.0
255567636	524	conserved hypothetical protein [Ricinus	0.965	0.956	0.745	0.0
224131316	521	predicted protein [Populus trichocarpa]	0.963	0.959	0.771	0.0
296086681	531	unnamed protein product [Vitis vinifera]	0.936	0.915	0.757	0.0
449452140	524	PREDICTED: uncharacterized protein LOC10	0.965	0.956	0.683	0.0
449520591	524	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.965	0.956	0.677	0.0
356500833	518	PREDICTED: uncharacterized protein LOC10	0.947	0.949	0.693	0.0
297814001	534	mitochondrial transcription termination	0.963	0.936	0.682	0.0
15236230	541	Mitochondrial transcription termination	0.963	0.924	0.675	0.0
357490431	530	mTERF family protein [Medicago truncatul	0.951	0.932	0.667	0.0

>gi|225436880|ref|XP_002273388.1| PREDICTED: uncharacterized protein LOC100249461 [Vitis vinifera]

 Score =  807 bits (2084), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/527 (76%), Positives = 456/527 (86%), Gaps = 12/527 (2%)

Query: 1   MSIRSYFGIRKSSFLLVHPELPAFTCWRPQLESLSTFGITGNHGGAIRLIARSRYSFADR 60
           M IRSY  I K S LLVHPELP     RPQL   S+ G + N    I    R +YS AD+
Sbjct: 8   MKIRSYGCITKPSLLLVHPELPC----RPQLIFASSLGFSSNREKRIGHATRLQYSVADK 63

Query: 61  N-VDASVRNP----STVRLGRKQGGSSSLYSRPSILEMKNERMANRAKVYDFLQGIGIVP 115
             V +S  +P    +   L ++QGGSSSLYSRPS+L+MKN+R+ NRA+VY+FL+GIGIVP
Sbjct: 64  TFVSSSTNSPLSKVNATHLEQRQGGSSSLYSRPSLLQMKNQRIENRARVYEFLKGIGIVP 123

Query: 116 DELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVR 175
           DELDGLELPVTVEVM+ERVDFLH LGL+IEDINNYPLVLGCSVKKNMIPVLDYLGKLGVR
Sbjct: 124 DELDGLELPVTVEVMKERVDFLHKLGLSIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVR 183

Query: 176 KSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMS 235
           KSTFTEFLRRYPQVLH+SVVVDLAPVVK LQG+DIKPNDIPRVLE+YPEVLGFKLEGTMS
Sbjct: 184 KSTFTEFLRRYPQVLHASVVVDLAPVVKNLQGMDIKPNDIPRVLEKYPEVLGFKLEGTMS 243

Query: 236 TSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKP 295
           TSVAYLVGIGV+RREIGGVLTRYP+ILGMRVGRVIKPFVEYLESLGIPRLAVARLIEK+P
Sbjct: 244 TSVAYLVGIGVARREIGGVLTRYPEILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKRP 303

Query: 296 YILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDS 355
           +ILGFGLEERVK NV+SLLEF VRK +L  ++AQYPEIIGIDL+PKLL Q+SLLNSA+D 
Sbjct: 304 HILGFGLEERVKANVKSLLEFDVRKTSLASMIAQYPEIIGIDLEPKLLSQRSLLNSALDL 363

Query: 356 SSKDFGSIVEKMPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKL 415
             +DF  +VEKMPQVV+   + + +HVDFLK CGF LQQVR++VV CPQ+LALNLDIMK 
Sbjct: 364 GPEDFPIVVEKMPQVVSLGKTPMLKHVDFLKDCGFSLQQVRKMVVGCPQLLALNLDIMKF 423

Query: 416 SFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGLQCSLSWLLNCSDEKFKE 475
           SFD+FQ+EM+RPLDDLV FPAFFTYGLESTI+PRH+M+A+KGL+CSLSWLL CSDEKF+E
Sbjct: 424 SFDFFQKEMERPLDDLVAFPAFFTYGLESTIRPRHQMVAKKGLKCSLSWLLICSDEKFEE 483

Query: 476 RMNYDTIDLEEMDAMPSFDMNTLMEQR---SDESASEYEEDSDDEYA 519
           RMNYD+I+LEEM+ + SFDMNTLME R   SDESAS+YEEDSDDEYA
Sbjct: 484 RMNYDSIELEEMEMVSSFDMNTLMEPRSDESDESASDYEEDSDDEYA 530

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567636|ref|XP_002524797.1| conserved hypothetical protein [Ricinus communis] gi|223535981|gb|EEF37640.1| conserved hypothetical protein [Ricinus communis]

 Score =  778 bits (2008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/507 (74%), Positives = 440/507 (86%), Gaps = 6/507 (1%)

Query: 5   SYFGIRKSSFLLVHPELPAFTCWRPQLESLSTFGITGNHGGAIRLIARSRYSFADRNVDA 64
           SY GI + SFLLVH +LP     +P+L+S+   GI  ++   + LI + R S A+R   +
Sbjct: 6   SYAGITRPSFLLVHSDLPILIYGKPKLKSVLPLGIPRDNTRRMSLITKIRCSIAERTFKS 65

Query: 65  SVRNPST-----VRLGRKQGGSSSLYSRPSILEMKNERMANRAKVYDFLQGIGIVPDELD 119
           S  + ST     VRLGRKQ GSSSLY+ PS+L+MKN ++ANRAKVY+FLQ IGIVPDELD
Sbjct: 66  SSTDSSTPKMKNVRLGRKQRGSSSLYTSPSLLDMKNNKIANRAKVYEFLQSIGIVPDELD 125

Query: 120 GLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTF 179
           GLELPVTVEVMRERVDFLH LGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKS+F
Sbjct: 126 GLELPVTVEVMRERVDFLHQLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSSF 185

Query: 180 TEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVA 239
           TEFLRRYPQVLH+SVVVDLAPVVKYLQG+DIKPNDIPRVLE+YPEV+GFKLEGTMSTSVA
Sbjct: 186 TEFLRRYPQVLHASVVVDLAPVVKYLQGMDIKPNDIPRVLEKYPEVMGFKLEGTMSTSVA 245

Query: 240 YLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILG 299
           YLVGIGV+RREIGG+LTRYP+ILGMRVGRVIKPFVEYLESLGIPRLAVARLIEK+PYILG
Sbjct: 246 YLVGIGVARREIGGILTRYPEILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKRPYILG 305

Query: 300 FGLEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKD 359
           F L+ERV PNVE+LL+F+V K  LP VVAQYPEIIG+DL+PKLL QQSLL+S I+   ++
Sbjct: 306 FELQERVIPNVETLLKFNVSKATLPSVVAQYPEIIGLDLEPKLLRQQSLLHSVIELGPEE 365

Query: 360 FGSIVEKMPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSFDY 419
           F  +VEKMPQV++ S   + +HVDFLK CGF +QQVR++VV CP VLALN+DIMKL FDY
Sbjct: 366 FARVVEKMPQVISLSRIPIVKHVDFLKECGFSMQQVREMVVRCPHVLALNIDIMKLCFDY 425

Query: 420 FQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGLQCSLSWLLNCSDEKFKERMNY 479
           F+ EM+RPLDDLV+FPAFFTYGLESTIKPRHK++A+K L+CSLSWLLNCSD+KF++RM+Y
Sbjct: 426 FKMEMKRPLDDLVIFPAFFTYGLESTIKPRHKIVAKKELKCSLSWLLNCSDDKFEQRMDY 485

Query: 480 DTIDLEEMDAMPSFDMNTLMEQRSDES 506
           +TID+EEM+ MPSFDMN  ME RSDE+
Sbjct: 486 ETIDMEEME-MPSFDMNNFMEPRSDET 511

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131316|ref|XP_002321054.1| predicted protein [Populus trichocarpa] gi|222861827|gb|EEE99369.1| predicted protein [Populus trichocarpa]

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/507 (77%), Positives = 435/507 (85%), Gaps = 7/507 (1%)

Query: 1   MSIRSYFGIRKSSFLLVHPELPAFTCWRPQLESLSTFGITGNHGGAIRLIARSRYSFADR 60
           M+I SY GI + SFLL HPELP     + QL S S   I  N       + R R   A+R
Sbjct: 1   MTIVSYAGITRPSFLLAHPELPVLVYCKLQLNSTSALRIPSNDMKRTE-VTRFRCYVAER 59

Query: 61  -----NVDASVRNPSTVRLGRKQGGSSSLYSRPSILEMKNERMANRAKVYDFLQGIGIVP 115
                +V +++ N   VRLGRKQ  SSSLYSRPS+LEMKNE++ANRAKVY+FL+GIGIVP
Sbjct: 60  TFESTSVGSTLSNTGNVRLGRKQRSSSSLYSRPSLLEMKNEKIANRAKVYEFLRGIGIVP 119

Query: 116 DELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVR 175
           DELDGLELPVT EVMRERVDFLH LGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVR
Sbjct: 120 DELDGLELPVTTEVMRERVDFLHKLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVR 179

Query: 176 KSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMS 235
           KSTFTEFLRRYPQVLH+SVVVDL PVVKYLQG+DIKPNDIPRVLERYPE+LGFKLEGTMS
Sbjct: 180 KSTFTEFLRRYPQVLHASVVVDLDPVVKYLQGMDIKPNDIPRVLERYPEILGFKLEGTMS 239

Query: 236 TSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKP 295
           TSVAYLVGIG++RRE+GGVLTRYP+ILGMRVGRVIKPFVEYLESLGIPRLAVARLIEK+P
Sbjct: 240 TSVAYLVGIGLARREVGGVLTRYPEILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKRP 299

Query: 296 YILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDS 355
           +ILGFGLEE+VKPNV SLLEF+VRK +LP VVAQYPEIIGI+LK KLLGQQ LL+S ID 
Sbjct: 300 HILGFGLEEQVKPNVGSLLEFNVRKSSLPSVVAQYPEIIGIELKEKLLGQQCLLHSVIDL 359

Query: 356 SSKDFGSIVEKMPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKL 415
             +DFG +VEKMPQVV+ S   + +HVDFLK CGF LQQVR +VV CPQ+LALNLDIMK 
Sbjct: 360 GPEDFGRVVEKMPQVVSLSRLPIVKHVDFLKDCGFSLQQVRAMVVGCPQLLALNLDIMKH 419

Query: 416 SFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGLQCSLSWLLNCSDEKFKE 475
           SFDYFQ EM+RPLDDLV FPAFFTYGLESTIKPRHK +A+KG++CSLSWLLNCSDEKF++
Sbjct: 420 SFDYFQVEMERPLDDLVTFPAFFTYGLESTIKPRHKRVAKKGMKCSLSWLLNCSDEKFEQ 479

Query: 476 RMNYDTIDLEEMDAMPSFDMNTLMEQR 502
           RM YDTID+EEM+ MPSFDMNTL E R
Sbjct: 480 RMEYDTIDMEEME-MPSFDMNTLTEPR 505

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086681|emb|CBI32316.3| unnamed protein product [Vitis vinifera]

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/495 (75%), Positives = 429/495 (86%), Gaps = 9/495 (1%)

Query: 1   MSIRSYFGIRKSSFLLVHPELPAFTCWRPQLESLSTFGITGNHGGAIRLIARSRYSFADR 60
           M IRSY  I K S LLVHPELP     RPQL   S+ G + N    I    R +YS AD+
Sbjct: 1   MKIRSYGCITKPSLLLVHPELPC----RPQLIFASSLGFSSNREKRIGHATRLQYSVADK 56

Query: 61  N-VDASVRNP----STVRLGRKQGGSSSLYSRPSILEMKNERMANRAKVYDFLQGIGIVP 115
             V +S  +P    +   L ++QGGSSSLYSRPS+L+MKN+R+ NRA+VY+FL+GIGIVP
Sbjct: 57  TFVSSSTNSPLSKVNATHLEQRQGGSSSLYSRPSLLQMKNQRIENRARVYEFLKGIGIVP 116

Query: 116 DELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVR 175
           DELDGLELPVTVEVM+ERVDFLH LGL+IEDINNYPLVLGCSVKKNMIPVLDYLGKLGVR
Sbjct: 117 DELDGLELPVTVEVMKERVDFLHKLGLSIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVR 176

Query: 176 KSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMS 235
           KSTFTEFLRRYPQVLH+SVVVDLAPVVK LQG+DIKPNDIPRVLE+YPEVLGFKLEGTMS
Sbjct: 177 KSTFTEFLRRYPQVLHASVVVDLAPVVKNLQGMDIKPNDIPRVLEKYPEVLGFKLEGTMS 236

Query: 236 TSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKP 295
           TSVAYLVGIGV+RREIGGVLTRYP+ILGMRVGRVIKPFVEYLESLGIPRLAVARLIEK+P
Sbjct: 237 TSVAYLVGIGVARREIGGVLTRYPEILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKRP 296

Query: 296 YILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDS 355
           +ILGFGLEERVK NV+SLLEF VRK +L  ++AQYPEIIGIDL+PKLL Q+SLLNSA+D 
Sbjct: 297 HILGFGLEERVKANVKSLLEFDVRKTSLASMIAQYPEIIGIDLEPKLLSQRSLLNSALDL 356

Query: 356 SSKDFGSIVEKMPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKL 415
             +DF  +VEKMPQVV+   + + +HVDFLK CGF LQQVR++VV CPQ+LALNLDIMK 
Sbjct: 357 GPEDFPIVVEKMPQVVSLGKTPMLKHVDFLKDCGFSLQQVRKMVVGCPQLLALNLDIMKF 416

Query: 416 SFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGLQCSLSWLLNCSDEKFKE 475
           SFD+FQ+EM+RPLDDLV FPAFFTYGLESTI+PRH+M+A+KGL+CSLSWLL CSDEKF+E
Sbjct: 417 SFDFFQKEMERPLDDLVAFPAFFTYGLESTIRPRHQMVAKKGLKCSLSWLLICSDEKFEE 476

Query: 476 RMNYDTIDLEEMDAM 490
           RMNYD+I+LEEM+ +
Sbjct: 477 RMNYDSIELEEMEMI 491

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452140|ref|XP_004143818.1| PREDICTED: uncharacterized protein LOC101216006 [Cucumis sativus]

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/508 (68%), Positives = 416/508 (81%), Gaps = 7/508 (1%)

Query: 3   IRSYFGIRKSSFLLVHPELPAFTCWRPQLESLSTFGITGNHGGAIRLIARSRYSFADRNV 62
           IR + G+ K +F L+  E+    C   +  +  TF +  NH     LI + +YS  DR  
Sbjct: 2   IRGHAGVAKPNFSLMLFEMSTLECHNFKFTATRTFQMPYNHEKRKGLITQLQYSHGDRRT 61

Query: 63  ------DASVRNPSTVRLGRKQGG-SSSLYSRPSILEMKNERMANRAKVYDFLQGIGIVP 115
                         + ++ RK+G   SSLYSRPS++EMKN R+ NR+KVY+FL+GIG+VP
Sbjct: 62  VFKSLHSTISSKSYSSKVDRKEGSIGSSLYSRPSLVEMKNVRLENRSKVYEFLRGIGVVP 121

Query: 116 DELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVR 175
           DELDGLELPVTV+VM+ERVDFL  LGLTIEDINNYPL+LGCSVKKNMIPVLDYLGKLGVR
Sbjct: 122 DELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPLILGCSVKKNMIPVLDYLGKLGVR 181

Query: 176 KSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMS 235
           KSTFTEFL+RYPQVLHSSVVVDLAPV+KYLQG+DIKPNDIPRVLERYPEVLGFKLEGTMS
Sbjct: 182 KSTFTEFLKRYPQVLHSSVVVDLAPVIKYLQGMDIKPNDIPRVLERYPEVLGFKLEGTMS 241

Query: 236 TSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKP 295
           TSVAYLVGIGV+RREIGGVLT+YP+ILGMRV RVIKPFVEYLE LGIPRLAVARLIEK+P
Sbjct: 242 TSVAYLVGIGVTRREIGGVLTKYPEILGMRVARVIKPFVEYLEGLGIPRLAVARLIEKRP 301

Query: 296 YILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDS 355
           +ILGFGLE++VKPN++ LLEF VR+  LP +VAQY EIIGIDL+  L  Q++LL S I+ 
Sbjct: 302 HILGFGLEKKVKPNIQLLLEFKVREAYLPSIVAQYAEIIGIDLEANLQTQRNLLKSLIEL 361

Query: 356 SSKDFGSIVEKMPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKL 415
            + +FG+I+EKMPQVV+ S SAV  HVDFLK+CGF L QV+ +V+ CPQ+LALN+DIMK 
Sbjct: 362 DNDNFGTIIEKMPQVVSLSRSAVINHVDFLKTCGFSLLQVKNMVIGCPQLLALNIDIMKH 421

Query: 416 SFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGLQCSLSWLLNCSDEKFKE 475
           SF++FQ EM RPL+DL  FPAFFTYGLESTIKPRH+ + +KG+ CSLSWLLNC+DEKF E
Sbjct: 422 SFEFFQMEMGRPLEDLATFPAFFTYGLESTIKPRHRKVVQKGISCSLSWLLNCADEKFME 481

Query: 476 RMNYDTIDLEEMDAMPSFDMNTLMEQRS 503
           RM+YDTID+EEM+  P+FDMN+L++ R+
Sbjct: 482 RMSYDTIDMEEMETTPTFDMNSLIQPRN 509

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520591|ref|XP_004167317.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101225792 [Cucumis sativus]

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/508 (67%), Positives = 414/508 (81%), Gaps = 7/508 (1%)

Query: 3   IRSYFGIRKSSFLLVHPELPAFTCWRPQLESLSTFGITGNHGGAIRLIARSRYSFADRNV 62
           IR + G+ K +F L+  E+    C   +  +  TF +  NH     LI + +YS  DR  
Sbjct: 2   IRGHAGVAKPNFSLMLFEMSTLECHNFKFTATRTFQMPYNHEKRKGLITQLQYSHGDRRT 61

Query: 63  ------DASVRNPSTVRLGRKQGG-SSSLYSRPSILEMKNERMANRAKVYDFLQGIGIVP 115
                         + ++ RK+G   SSLYSRPS++EMKN R+ NR+KVY+FL+GIG+VP
Sbjct: 62  VFKSLHSTISSKSYSSKVDRKEGSIGSSLYSRPSLVEMKNVRLENRSKVYEFLRGIGVVP 121

Query: 116 DELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVR 175
           DELDGLELPVTV+VM+ERVDFL  LGLTIEDINNYPL+LGCSVK NMIPVLDYLGKLGVR
Sbjct: 122 DELDGLELPVTVDVMKERVDFLLKLGLTIEDINNYPLILGCSVKXNMIPVLDYLGKLGVR 181

Query: 176 KSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMS 235
           KSTFTEFL RYPQVLHSSVVVDLAPV+KYLQG+DIKPNDIPRVLERYPEVLGFKLEGTMS
Sbjct: 182 KSTFTEFLXRYPQVLHSSVVVDLAPVIKYLQGMDIKPNDIPRVLERYPEVLGFKLEGTMS 241

Query: 236 TSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKP 295
           TSVAYLVGIGV+RREIGGVLT+YP+ILGMRV RVIKPFVEYLE LGIPRLAVARLIEK+P
Sbjct: 242 TSVAYLVGIGVTRREIGGVLTKYPEILGMRVARVIKPFVEYLEGLGIPRLAVARLIEKRP 301

Query: 296 YILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDS 355
           +ILGFGLE++VKPN++ LLEF VR+  LP +VAQY EIIG+DL+  L  Q++LL S I+ 
Sbjct: 302 HILGFGLEKKVKPNIQLLLEFKVREAYLPSIVAQYAEIIGMDLEANLQTQRNLLKSLIEL 361

Query: 356 SSKDFGSIVEKMPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKL 415
            + +FG+I+EKMPQ+V+ S SAV  HVDFLK+CGF L QV+ +V+ CPQ+LALN+DIMK 
Sbjct: 362 DNDNFGTIIEKMPQIVSLSRSAVINHVDFLKTCGFSLLQVKNMVIGCPQLLALNIDIMKH 421

Query: 416 SFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGLQCSLSWLLNCSDEKFKE 475
           SF++FQ EM RPL+DL  FPAFFTYGLESTIKPRH+ + +KG+ CSLSWLLNC+DEKF E
Sbjct: 422 SFEFFQMEMGRPLEDLATFPAFFTYGLESTIKPRHRKVVQKGISCSLSWLLNCADEKFME 481

Query: 476 RMNYDTIDLEEMDAMPSFDMNTLMEQRS 503
           RM+YDTID+EEM+  P+FDMN+L++ R+
Sbjct: 482 RMSYDTIDMEEMETTPTFDMNSLIQPRN 509

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500833|ref|XP_003519235.1| PREDICTED: uncharacterized protein LOC100785223 [Glycine max]

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/505 (69%), Positives = 415/505 (82%), Gaps = 13/505 (2%)

Query: 8   GIRKSSFLLVHPELPAFTCWRPQLESLSTFGITGNHGGAIRLIARSRYSFADRNVDA--- 64
           GI K  F +   E+P  T    +L +       G+       I R +YS ADR   +   
Sbjct: 9   GITKPCFFIAQTEMPILTFAHCKLSATLALRRMGS-------ITRLQYSVADRTFTSGSV 61

Query: 65  ---SVRNPSTVRLGRKQGGSSSLYSRPSILEMKNERMANRAKVYDFLQGIGIVPDELDGL 121
              + +  S     R+ GGSSS+YSRPS+ EMK E+ A R KVY+FL+ IGIVPDELDGL
Sbjct: 62  DLPASKTDSGRVNRRRGGGSSSVYSRPSLSEMKKEKAAIREKVYEFLRAIGIVPDELDGL 121

Query: 122 ELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTE 181
           ELPVTV+VMRERVDFLH+LGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKS+ T+
Sbjct: 122 ELPVTVDVMRERVDFLHSLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSSITQ 181

Query: 182 FLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYL 241
           FL+RYPQVLH+SVVVDL PVV YL+G+DIK +D+PRVLERYPEVLGFKLEGTMSTSVAYL
Sbjct: 182 FLQRYPQVLHASVVVDLMPVVNYLKGMDIKFDDVPRVLERYPEVLGFKLEGTMSTSVAYL 241

Query: 242 VGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFG 301
           +GIGV RREIGGVLTRYP+ILGMRVGRVIKPFVEYLESLGIPRLA+ARLIE++PYILGFG
Sbjct: 242 IGIGVGRREIGGVLTRYPEILGMRVGRVIKPFVEYLESLGIPRLAIARLIEQRPYILGFG 301

Query: 302 LEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFG 361
           L E+VKPNV+ L E++VR+ +LP ++AQYP+IIG DL  KL  Q+SLLNS +D   +DFG
Sbjct: 302 LGEKVKPNVKYLEEYNVRRTSLPSIIAQYPDIIGTDLNQKLEKQRSLLNSVLDLDPEDFG 361

Query: 362 SIVEKMPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQ 421
            +VEKMPQVVN S+  + +HVDFLK+CGF L Q+RQ+VV CPQ+LALN+DIMKLSFDYFQ
Sbjct: 362 RVVEKMPQVVNLSSGPMLKHVDFLKNCGFSLPQMRQMVVGCPQLLALNIDIMKLSFDYFQ 421

Query: 422 REMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGLQCSLSWLLNCSDEKFKERMNYDT 481
             M+RPL+DLV FPAFFTYGLESTIKPRHKM+ +KGL+CSLSW+LNCS+EKF++RM+YDT
Sbjct: 422 MVMKRPLEDLVTFPAFFTYGLESTIKPRHKMVVKKGLKCSLSWMLNCSNEKFEQRMDYDT 481

Query: 482 IDLEEMDAMPSFDMNTLMEQRSDES 506
           ID+EEM+  PSFDMN+L + RSDES
Sbjct: 482 IDMEEMEMEPSFDMNSLTQPRSDES 506

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814001|ref|XP_002874884.1| mitochondrial transcription termination factor family protein [Arabidopsis lyrata subsp. lyrata] gi|297320721|gb|EFH51143.1| mitochondrial transcription termination factor family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/511 (68%), Positives = 416/511 (81%), Gaps = 11/511 (2%)

Query: 1   MSIRSYFGIRKSSFLLVHPELPAFTCWRPQLESLSTFGITGNHGG---AIRLIARSRYSF 57
           M IR   G  K  FLLVH E P+F   R +  S ST+G      G        A +   F
Sbjct: 1   MKIRFCSGFTKPGFLLVHFEPPSFFSVRSRSLSDSTYGNYKKRPGIGIGTVQCAIANRRF 60

Query: 58  ADRNVDASVRNPSTVRLGR-------KQGGSSSLYSRPSILEMKNERMANRAKVYDFLQG 110
           + R+VD+S +   + R          K   S SLYSRPS+LEM  E+ ANRAKVY+FL+G
Sbjct: 61  SSRSVDSSPKRERSSRPSSRRDRDKDKGRDSQSLYSRPSLLEMNKEKAANRAKVYEFLRG 120

Query: 111 IGIVPDELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLG 170
           IGIVPDELDGLELPVT +VM+ERV+FLH LGLTIEDINNYPLVLGCSVKKNM+PVLDYLG
Sbjct: 121 IGIVPDELDGLELPVTADVMKERVEFLHKLGLTIEDINNYPLVLGCSVKKNMVPVLDYLG 180

Query: 171 KLGVRKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKL 230
           KLGVRKSTF EFLRRYPQVLH+SVV+DLAPVVKYLQGLDIKP+D+PRVLERYPEVLGFKL
Sbjct: 181 KLGVRKSTFAEFLRRYPQVLHASVVIDLAPVVKYLQGLDIKPSDVPRVLERYPEVLGFKL 240

Query: 231 EGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARL 290
           EGTMSTSVAYLVGIGV+RREIGGVLTRYP+ILGMRV R+IKP VEYLE+LGIPRLAVARL
Sbjct: 241 EGTMSTSVAYLVGIGVARREIGGVLTRYPEILGMRVARIIKPLVEYLENLGIPRLAVARL 300

Query: 291 IEKKPYILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLN 350
           IEK+P+ILGF L++ VKPNV+ L +F VR+ +LP ++AQYPEIIGIDLKPKL  Q+ LL 
Sbjct: 301 IEKRPHILGFELDDTVKPNVQILQDFDVRETSLPSIIAQYPEIIGIDLKPKLETQKKLLC 360

Query: 351 SAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVLALNL 410
           SAID + +D GS++E+MPQ V+ S S + +H+DFL  CGF + Q R++V+ CPQVLALNL
Sbjct: 361 SAIDLNPEDLGSLIERMPQFVSLSESPMLKHIDFLTKCGFSIDQTREMVIGCPQVLALNL 420

Query: 411 DIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGLQCSLSWLLNCSD 470
            IMKLSF+YFQ+EM+RPL DLV FPAFFTYGLEST+KPRHK I +KG++CSL+W+LNCSD
Sbjct: 421 GIMKLSFEYFQKEMRRPLQDLVDFPAFFTYGLESTVKPRHKKIIKKGIKCSLAWMLNCSD 480

Query: 471 EKFKERMNYDTIDLEEMDAMP-SFDMNTLME 500
           EKF++RM+YDTID+EE+++ P SFDM+TLM+
Sbjct: 481 EKFEQRMSYDTIDIEEVESDPSSFDMSTLMQ 511

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236230|ref|NP_192208.1| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana] gi|3924606|gb|AAC79107.1| hypothetical protein [Arabidopsis thaliana] gi|7269784|emb|CAB77784.1| hypothetical protein [Arabidopsis thaliana] gi|332656857|gb|AEE82257.1| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/518 (67%), Positives = 417/518 (80%), Gaps = 18/518 (3%)

Query: 1   MSIRSYFGIRKSSFLLVHPELPAFTCWRPQLESLSTFGITGNH----GGAIRLIARSRYS 56
           M IR   G  K  FLLVH E P+F   R +  S ST+G   NH    G  I L  +   +
Sbjct: 1   MKIRFCNGFTKPGFLLVHFEPPSFFAVRSRSLSDSTYGNLCNHKKRPGTGIGLTVQCAIA 60

Query: 57  ---FADRNVDASVRNPSTVRLGR----------KQGGSSSLYSRPSILEMKNERMANRAK 103
              F+ R++D+  R  S+               K   S SLYSRPS+L+M  E+ ANRAK
Sbjct: 61  NRRFSSRSLDSPRRERSSRSSSSSGRDRDRDKDKGRDSKSLYSRPSLLDMNKEKAANRAK 120

Query: 104 VYDFLQGIGIVPDELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMI 163
           VY+FL+GIGIVPDELDGLELPVT +VM+ERV+FLH LGLTIEDINNYPLVLGCSVKKNM+
Sbjct: 121 VYEFLRGIGIVPDELDGLELPVTADVMKERVEFLHKLGLTIEDINNYPLVLGCSVKKNMV 180

Query: 164 PVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYP 223
           PVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVV+DLAPVVKYLQGLDIKP+D+PRVLERYP
Sbjct: 181 PVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVIDLAPVVKYLQGLDIKPSDVPRVLERYP 240

Query: 224 EVLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIP 283
           EVLGFKLEGTMSTSVAYLVGIGV+RREIGG+LTRYP+ILGMRV R+IKP VEYLE LGIP
Sbjct: 241 EVLGFKLEGTMSTSVAYLVGIGVARREIGGILTRYPEILGMRVARIIKPLVEYLEVLGIP 300

Query: 284 RLAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLL 343
           RLA ARLIEK+P+ILGF L++ VKPNV+ L +F+VR+ +LP ++AQYPEIIGIDLKPKL 
Sbjct: 301 RLAAARLIEKRPHILGFELDDTVKPNVQILQDFNVRETSLPSIIAQYPEIIGIDLKPKLD 360

Query: 344 GQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECP 403
            Q+ LL SAI  + +D GS++E+MPQ V+ S S + +H+DFL  CGF + Q R++V+ CP
Sbjct: 361 TQRKLLCSAIHLNPEDLGSLIERMPQFVSLSESPMLKHIDFLTKCGFSIDQTREMVIGCP 420

Query: 404 QVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGLQCSLS 463
           QVLALNL IMKLSF+YFQ+EM+RPL DLV FPAFFTYGLEST+KPRHK I +KG++CSL+
Sbjct: 421 QVLALNLGIMKLSFEYFQKEMKRPLQDLVDFPAFFTYGLESTVKPRHKKIIKKGIKCSLA 480

Query: 464 WLLNCSDEKFKERMNYDTIDLEEMDAMP-SFDMNTLME 500
           W+LNCSDEKF++RM+YDTID+EE++  P SFDMNTLM+
Sbjct: 481 WMLNCSDEKFEQRMSYDTIDIEEVETDPSSFDMNTLMQ 518

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357490431|ref|XP_003615503.1| mTERF family protein [Medicago truncatula] gi|355516838|gb|AES98461.1| mTERF family protein [Medicago truncatula]

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/505 (66%), Positives = 414/505 (81%), Gaps = 11/505 (2%)

Query: 9   IRKSSFLLVHPELPAFTCWRPQLESLS-TFGITGNHGGAIRLIARSRYSFADRN------ 61
           I K +F     E+P  T    +L + +    +  N+   IR I + + S A R       
Sbjct: 7   ITKPNFPFPPTEMPILTFGHSKLTAATLALQLPCNYIRKIRFITKLQCSVAGRTDSYRTS 66

Query: 62  -VDASVRNPSTVRLGRKQGGSSSLYS---RPSILEMKNERMANRAKVYDFLQGIGIVPDE 117
             D+      +  + RK+ G+SSLY+   RPS+ EMK ++   R  VY+FL+GIGIVPDE
Sbjct: 67  AADSQGSKRDSGEIQRKRRGASSLYAGYARPSLSEMKKDKATLRKVVYEFLRGIGIVPDE 126

Query: 118 LDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKS 177
           LDGLELPVTV+VM+ERVDFLH+LGLTIEDINNYPLVLGCSVKKNM+PVLDYLGKLGVRKS
Sbjct: 127 LDGLELPVTVDVMKERVDFLHSLGLTIEDINNYPLVLGCSVKKNMVPVLDYLGKLGVRKS 186

Query: 178 TFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTS 237
           T T+FLR YPQVLH+SVVVDL PVVKYLQG+DIKP+DIPRVLERYPEVLGFKLEGTMSTS
Sbjct: 187 TITQFLRTYPQVLHASVVVDLVPVVKYLQGMDIKPDDIPRVLERYPEVLGFKLEGTMSTS 246

Query: 238 VAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKPYI 297
           VAYL+GIGV RRE+GG+LTR+P+ILGMRVGRVIKPFVEYLESLGIPRLA+ARLIE +PYI
Sbjct: 247 VAYLIGIGVGRRELGGILTRFPEILGMRVGRVIKPFVEYLESLGIPRLAIARLIETQPYI 306

Query: 298 LGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSS 357
           LGF L+E+VKPNV+SL EF+VR+ +L  ++AQYP+IIG DL+PKL  ++S+LNS +D  +
Sbjct: 307 LGFDLDEKVKPNVKSLEEFNVRETSLASIIAQYPDIIGTDLEPKLADKRSVLNSVLDLDA 366

Query: 358 KDFGSIVEKMPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSF 417
           +DFG I+EKMPQVV+ S++ + +HVDFLK CGF + Q+R+++V CPQ+LALN+DIMKLSF
Sbjct: 367 EDFGLIIEKMPQVVSLSSTPMLKHVDFLKDCGFSVDQMRKMIVGCPQLLALNIDIMKLSF 426

Query: 418 DYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGLQCSLSWLLNCSDEKFKERM 477
           DYFQ EM+RPL+DLV FPAFFTYGLESTIKPRH M+ +KGL+CSL+W+LNCSDEKF++RM
Sbjct: 427 DYFQSEMERPLEDLVEFPAFFTYGLESTIKPRHNMVTKKGLKCSLAWMLNCSDEKFEQRM 486

Query: 478 NYDTIDLEEMDAMPSFDMNTLMEQR 502
           +YDTID+EEM+  PSFDMN+LM  R
Sbjct: 487 DYDTIDMEEMEMEPSFDMNSLMRPR 511

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	519
TAIR|locus:2139394	541	BSM "AT4G02990" [Arabidopsis t	0.865	0.829	0.720	3.6e-176
TAIR|locus:2051814	507	AT2G44020 "AT2G44020" [Arabido	0.845	0.865	0.492	4.7e-119
TAIR|locus:2049329	641	EMB2219 "embryo defective 2219	0.628	0.508	0.270	6.9e-37
TAIR|locus:2207420	591	AT1G78930 "AT1G78930" [Arabido	0.662	0.582	0.214	4.8e-24
TAIR|locus:505006461	493	MDA1 "AT4G14605" [Arabidopsis	0.853	0.898	0.245	4.4e-23
TAIR|locus:2162092	496	AT5G55580 "AT5G55580" [Arabido	0.614	0.643	0.255	5.6e-21
TAIR|locus:2036858	418	AT1G61970 "AT1G61970" [Arabido	0.649	0.806	0.247	4.8e-13
TAIR|locus:2153433	500	PTAC15 "AT5G54180" [Arabidopsi	0.701	0.728	0.242	1.6e-12
TAIR|locus:2056745	283	EMB93 "EMBRYO DEFECTIVE 93" [A	0.406	0.745	0.251	3.2e-12
TAIR|locus:2062328	303	AT2G34620 "AT2G34620" [Arabido	0.495	0.848	0.252	5.4e-12

TAIR|locus:2139394 BSM "AT4G02990" [Arabidopsis thaliana (taxid:3702)]

 Score = 1711 (607.4 bits), Expect = 3.6e-176, P = 3.6e-176
 Identities = 333/462 (72%), Positives = 396/462 (85%)

Query:    50 IARSRYSFADRNVDASVR---NPSTVRLGR-----KQGG--SSSLYSRPSILEMKNERMA 99
             IA  R+S   R++D+  R   + S+   GR     K  G  S SLYSRPS+L+M  E+ A
Sbjct:    59 IANRRFS--SRSLDSPRRERSSRSSSSSGRDRDRDKDKGRDSKSLYSRPSLLDMNKEKAA 116

Query:   100 NRAKVYDFLQGIGIVPDELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVK 159
             NRAKVY+FL+GIGIVPDELDGLELPVT +VM+ERV+FLH LGLTIEDINNYPLVLGCSVK
Sbjct:   117 NRAKVYEFLRGIGIVPDELDGLELPVTADVMKERVEFLHKLGLTIEDINNYPLVLGCSVK 176

Query:   160 KNMIPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVL 219
             KNM+PVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVV+DLAPVVKYLQGLDIKP+D+PRVL
Sbjct:   177 KNMVPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVIDLAPVVKYLQGLDIKPSDVPRVL 236

Query:   220 ERYPEVLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLES 279
             ERYPEVLGFKLEGTMSTSVAYLVGIGV+RREIGG+LTRYP+ILGMRV R+IKP VEYLE 
Sbjct:   237 ERYPEVLGFKLEGTMSTSVAYLVGIGVARREIGGILTRYPEILGMRVARIIKPLVEYLEV 296

Query:   280 LGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLK 339
             LGIPRLA ARLIEK+P+ILGF L++ VKPNV+ L +F+VR+ +LP ++AQYPEIIGIDLK
Sbjct:   297 LGIPRLAAARLIEKRPHILGFELDDTVKPNVQILQDFNVRETSLPSIIAQYPEIIGIDLK 356

Query:   340 PKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIV 399
             PKL  Q+ LL SAI  + +D GS++E+MPQ V+ S S + +H+DFL  CGF + Q R++V
Sbjct:   357 PKLDTQRKLLCSAIHLNPEDLGSLIERMPQFVSLSESPMLKHIDFLTKCGFSIDQTREMV 416

Query:   400 VECPQVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGLQ 459
             + CPQVLALNL IMKLSF+YFQ+EM+RPL DLV FPAFFTYGLEST+KPRHK I +KG++
Sbjct:   417 IGCPQVLALNLGIMKLSFEYFQKEMKRPLQDLVDFPAFFTYGLESTVKPRHKKIIKKGIK 476

Query:   460 CSLSWLLNCSDEKFKERMNYDTIDLEEMDAMPS-FDMNTLME 500
             CSL+W+LNCSDEKF++RM+YDTID+EE++  PS FDMNTLM+
Sbjct:   477 CSLAWMLNCSDEKFEQRMSYDTIDIEEVETDPSSFDMNTLMQ 518

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008380 "RNA splicing" evidence=IMP

GO:0009536 "plastid" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0032502 "developmental process" evidence=IMP

GO:0042793 "transcription from plastid promoter" evidence=IMP

GO:0042794 "rRNA transcription from plastid promoter" evidence=IMP

TAIR|locus:2051814 AT2G44020 "AT2G44020" [Arabidopsis thaliana (taxid:3702)]

 Score = 1172 (417.6 bits), Expect = 4.7e-119, P = 4.7e-119
 Identities = 221/449 (49%), Positives = 327/449 (72%)

Query:    59 DRNVDASVRNPSTV-RLGRKQGGSSSL--YSRPSI----LEMKNERMANRAKVYDFLQGI 111
             D N+    +NP ++ R+      SS    Y  P++    ++ K E++ NR K+ D+L+G+
Sbjct:    35 DPNIP-QFQNPCSIFRIAHYATQSSKFPEYEMPTVTWGVIQGKKEKLVNRVKICDYLKGL 93

Query:   112 GIVPDELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGK 171
             GI+ DEL+ +ELP T+EVM ERV+FL  LGLTI+DIN YPL+LGCSV+KN+IPVL YL K
Sbjct:    94 GIITDELESIELPSTIEVMCERVEFLQKLGLTIDDINEYPLMLGCSVRKNLIPVLAYLEK 153

Query:   172 LGVRKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLE 231
             +G+ +S   EF++ YPQVLH+SVVV+LAPVVK+L+GLD++  D+  VL +YPE+LGFKLE
Sbjct:   154 IGISRSKLGEFVKNYPQVLHASVVVELAPVVKFLRGLDVEKQDLGYVLMKYPELLGFKLE 213

Query:   232 GTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLI 291
             GTMSTSVAYLV IGVS R+IG ++T+YP +LGMRVG +IKP V+YL S+G+P+  VAR++
Sbjct:   214 GTMSTSVAYLVSIGVSPRDIGPMVTQYPYLLGMRVGTMIKPLVDYLISIGLPKKIVARML 273

Query:   292 EKKPYILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNS 351
             EK+ YI+G+ LEE VKPNV+ L+ F V+KE LP+++AQYP+I+G+ +K K+  QQ   + 
Sbjct:   274 EKRSYIVGYNLEETVKPNVDCLISFGVKKELLPLLIAQYPQILGLPVKAKMSTQQYFFSL 333

Query:   352 AIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLD 411
              +    + F  +VEKMPQ+V+   + + + ++FL    F ++ + ++VV CPQ+L   ++
Sbjct:   334 KLKIDPEGFARVVEKMPQIVSLKQNVIMKPIEFLLGRAFQVEDIAKMVVRCPQILCSRVE 393

Query:   412 IMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGLQCSLSWLLNCSDE 471
             +MK S+ +++ EM RP+ +LV +P +FTY LES IKPR++ +  KG++ SL+W LNCSD+
Sbjct:   394 LMKNSYYFYKTEMGRPMKELVEYPEYFTYSLESRIKPRYQKLQSKGIRSSLNWFLNCSDQ 453

Query:   472 KFKERMNYDTIDLEEMDAMPSFDMNTLME 500
             +F+ER+  + ID +     P+FDM   +E
Sbjct:   454 RFEERLQGNFIDPDTEG--PTFDMGGKLE 480

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2049329 EMB2219 "embryo defective 2219" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 6.9e-37, P = 6.9e-37
 Identities = 89/329 (27%), Positives = 169/329 (51%)

Query:   159 KKNMIPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRV 218
             ++ +  +++YL   GVR+      + R P++L  S+  ++   V +   + +  ND   +
Sbjct:   278 REELNEIVEYLESNGVRRDWMGYVVGRCPELLSFSME-EVKSRVDFFLKMGMNQNDFGTM 336

Query:   219 LERYPEVLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLE 278
             +  YP+++GF     M   + YL   G+S  E+G +L   P ++G  +    KP V+Y  
Sbjct:   337 VYDYPKIIGFFSFQVMEKKINYLKEFGLSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFY 396

Query:   279 SLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDL 338
              LGIP+  + R++  KP +    LE+ + P V  L E  +  EA+  ++ ++P ++   L
Sbjct:   397 YLGIPKEGMKRILVVKPILYCIDLEKTIAPKVRFLQEMGIPNEAIGNMLVKFPSLLTNSL 456

Query:   339 KPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNAS-NSAVTRHVDFLKSCGFFLQQVRQ 397
               K+      L +    + KD G ++   P ++  S  + +  ++ +  S G    Q+ +
Sbjct:   457 YKKIRPVVIFLLTRAGVTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGE 516

Query:   398 IVVECPQVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKG 457
             ++ + P +L  N+D ++  + Y +R M RPL DL+ FP FF+Y LE  I PRH ++    
Sbjct:   517 MIADFPMLLRYNVDNLRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENR 576

Query:   458 LQCSLSWLLNCSDEKFKERMNYDTIDLEE 486
             +   L ++L C+DE+F+ R+  D ++  E
Sbjct:   577 VNFKLRYMLACTDEEFERRVR-DKVERRE 604

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2207420 AT1G78930 "AT1G78930" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 4.8e-24, P = 4.8e-24
 Identities = 75/350 (21%), Positives = 178/350 (50%)

Query:   127 VEVMRERVDFLHNLGLTIEDI-NNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTEFLRR 185
             +E  R  +D L ++  +   +  ++P +L  S + +M P++++L  +G+ K    + L  
Sbjct:   228 IEARRGGLDMLGSVDASFRFLLESFPRLLLLSEENDMKPMVEFLESIGIPKYCLGKVLLL 287

Query:   186 YPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLVGIG 245
             YP ++          V   ++ + +   D  ++L +YP +L   ++   S   ++     
Sbjct:   288 YPPIMLGKTEEIKRRVATAMEKVSVVNKDSGKLLLKYPWILSPSIQENYSHIGSFFYSES 347

Query:   246 VSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGLEER 305
             V + +I   + R+P +LG     + +  V+  + LG+    + ++I K P +L    +E 
Sbjct:   348 VLKMDIDHAIRRWPLLLGCSASNM-EMMVKEFDKLGVRDKRMGKVIPKMPQLLLCKPQEF 406

Query:   306 VKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVE 365
             +K  V  L +   +KE +  ++ + PEI G  ++ K L ++ +  +    S+  F  I++
Sbjct:   407 LKV-VCFLEDLGFQKEIVGQILCRCPEIFGCSIE-KTLQKKLIFLTRFGVSTTHFPRIIK 464

Query:   366 KMPQ-VVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLD-IMKLSFDYFQRE 423
             K P+ ++  ++  V   + +L   G   +++  ++ +   +L  ++D +++  F++    
Sbjct:   465 KYPEFLIYDADKTVLPRLKYLMEIGISEREIAFMIRKFSPILGYSIDKVLRPKFEFLVNS 524

Query:   424 MQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGLQCSLSWLLNCSDEKF 473
             M++P+ +++ +P +F+Y LE  IKPR +++  + ++C+L  +L  +DE+F
Sbjct:   525 MEKPVREVIEYPRYFSYSLEKRIKPRFRVLKGRNIECTLQEMLGKNDEEF 574

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:505006461 MDA1 "AT4G14605" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 4.4e-23, P = 4.4e-23
 Identities = 117/476 (24%), Positives = 216/476 (45%)

Query:    14 FLLVHPELPAFTCWRPQLESLSTFGITGNHGGAIRLIARSRYSFADR----NVDASVRNP 69
             FL+   E P+    R QL             G IRL  ++R  F+ R    N+ A+ +  
Sbjct:    13 FLVARREKPST---RAQLWFTGRLSFRQETNG-IRL--KNRVEFSPRPVPPNLIAAEKEE 66

Query:    70 STVRLG---RKQGGSSSLYSRP-SILEMKNERMANRA-KVYD--FLQGIGIVPDELDGLE 122
             +   L    +KQG S+SL SR  +  ++  + + +R   V+   +L G  +   E+    
Sbjct:    67 AKAVLTLFFKKQGLSNSLSSRLINKSDLFIDHLVSRLHSVHKARYLVGRELTTLEIRDSL 126

Query:   123 LPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTEF 182
             +P   ++  E  D L  L ++  D    P ++  S    + P  D       RK      
Sbjct:   127 IPYLEQLHEEHGDLLAELVVSFPDPPAEPRLVASSPVSVLPPRGDTDSAADTRK------ 180

Query:   183 LRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLV 242
             LR   +V        L P   YL  L +    I  +  ++     + L+G +   V +L+
Sbjct:   181 LRAVSRVSELDTEGALRPQTLYLLDLGLNLEQIKTITRKFAAFPYYSLDGKIKPVVEFLL 240

Query:   243 GIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGL 302
              +G+ + +I  +L + P I G+ +   +KP + +LE+LGI +   A++I + P IL +  
Sbjct:   241 DLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIISRFPAILTYS- 299

Query:   303 EERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGS 362
              +++   VE L +  + +E +  ++ + P I+   ++ KL        S     + D   
Sbjct:   300 RQKLTSTVEFLSQTGLTEEQIGRILTRCPNIMSYSVEDKLRPTMEYFRSL----NVDVAV 355

Query:   363 IVEKMPQVVNASNSAVTRHV-DFLKSCGFFLQQVRQIVVECPQVLALNL--DIMKLSFDY 419
             ++ + PQ    S  +  + V +F    GF L ++  ++     +   +L  ++M   +DY
Sbjct:   356 LLHRCPQTFGLSIESNLKPVTEFFLEKGFGLDEIGIMISRYGALYTFSLKENVMP-KWDY 414

Query:   420 FQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGLQCSLSWLLNCSDEKFKE 475
             FQ  M  P  +LV FP FF Y L+  IKPR++++ R G++  L+ +L+ S  +F++
Sbjct:   415 FQT-MDYPKSELVKFPQFFGYSLQERIKPRYELVQRSGVRLLLNQVLSLSGIEFEK 469

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

TAIR|locus:2162092 AT5G55580 "AT5G55580" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 5.6e-21, P = 5.6e-21
 Identities = 86/337 (25%), Positives = 160/337 (47%)

Query:   157 SVKKNMIPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVVD--LAPVVKYLQGLDIKPND 214
             S KK     LD  GK+  RK  + E L  YP+ L   + +D    P++ YL    +K + 
Sbjct:   146 SEKKKESWRLDGRGKMSSRK--YVEKL--YPR-LAEEIDIDPKCVPLLDYLSTFGLKESH 200

Query:   215 IPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFV 274
               ++ ER+   L   +       + YL+ +GV  R+I  +L R P IL   V   +K  +
Sbjct:   201 FVQMYERHMPSLQINVFSAQER-LDYLLSVGVKHRDIKRMLLRQPQILQYTVENNLKAHI 259

Query:   275 EYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLE-FSVRKEALPVVVAQYPEI 333
              +L  LGIP   + +++   P +  + +E  ++P +  L+E   +++  +  VV   P+I
Sbjct:   260 SFLMGLGIPNSKIGQIVAATPSLFSYSVENSLRPTIRYLIEEVGIKETDVGKVVQLSPQI 319

Query:   334 IGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNAS-NSAVTRHVDFLKSCGFFL 392
             +   L      +   L+  + +       +V+K PQ+++ S +      ++FL+S G   
Sbjct:   320 LVQRLDITWNTRYMFLSKELGAPRDSVVKMVKKHPQLLHYSIDDGFLPRINFLRSIGMCN 379

Query:   393 QQVRQIVVECPQVLALNL-DIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHK 451
               + +++    QVL+L+L D +K  + Y   E+   +  L  +P + +  L+  I+PRH+
Sbjct:   380 SDILKVLTSLTQVLSLSLEDNLKPKYMYLVNELNNEVHILTKYPMYLSLSLDQRIRPRHR 439

Query:   452 MIA-----RKGLQCSLSWLLNCSDEKFKERMNYDTID 483
              +      RKG    LS L+  +DE F ++    ++D
Sbjct:   440 FLVELKKVRKG-PFPLSSLVP-NDESFCQQWAGTSVD 474

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

TAIR|locus:2036858 AT1G61970 "AT1G61970" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.8e-13, P = 4.8e-13
 Identities = 90/363 (24%), Positives = 153/363 (42%)

Query:   134 VDFL-HNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTEFLRRYPQVLHS 192
             V +L  +LGLT +   +    +    K N   VL+ L   G   S  +  +R YPQ+L +
Sbjct:    55 VSYLVDSLGLTTKLAESISRKVSFEDKNNPDSVLNLLTSHGFTGSQISTIIRDYPQLLIA 114

Query:   193 SVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVSRREIG 252
                  L P +++LQ      ++I  ++   PE+LG K   T+S    ++    + +    
Sbjct:   115 DAEKSLGPKLQFLQSRGASSSEITEIVSSVPEILGKKGHKTISVYYDFIKDTLLEKSSKN 174

Query:   253 GVLTR-YPDILGMRVGRVIKPFVEYLESLGIP-RLAVARLIEKKPYILGFG-LEERVKPN 309
               L    P   G    ++    V  L  LG+P +L  + LI     + G    EE +K  
Sbjct:   175 EKLCHSLPQ--GNLENKIRN--VSVLRELGMPHKLLFSLLISDSQPVCGKEKFEETLKKV 230

Query:   310 VESLLEFSVRK--EALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKM 367
             VE   + +  K  EAL V+   Y       +  K + ++  L  ++     D  S  +K 
Sbjct:   231 VEMGFDPTTSKFVEALQVI---YK------MNEKTIEEKVHLYKSLGFDVGDVWSSFKKW 281

Query:   368 PQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQREMQRP 427
             P  +  S   +   ++     GF   +  ++V   P  + L+ + +K   ++  ++M  P
Sbjct:   282 PISLRVSEKKMLDSIETFLGLGFSRDEFAKMVKHFPPCIGLSTETVKKKTEFLVKKMNWP 341

Query:   428 LDDLVVFPAFFTYGLESTIKPRH---KMIARKGLQC----SLSWLLNCSDEKFKERMNYD 480
             L  +V  PA F Y LE  I PR    K +  KGL      S+S +L C+ + F  R   +
Sbjct:   342 LKAVVSNPAVFGYSLEKRIVPRGNVIKALMSKGLMRNELPSISCVLMCTKQVFLNRYVAN 401

Query:   481 TID 483
              +D
Sbjct:   402 HVD 404

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2153433 PTAC15 "AT5G54180" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 95/392 (24%), Positives = 172/392 (43%)

Query:   103 KVYDF-LQG-IGIVPDELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKK 160
             K+  F LQG I   P+ L   E  + +  +   VD L    L  E +     V+  S+  
Sbjct:   124 KINGFPLQGLIAKCPNLLTSEEFDLVISFL---VDELEGR-LDPELVERLLSVVDTSILL 179

Query:   161 NMIPVLDYLGKLGVRKSTFTEFLRR-Y-PQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRV 218
             +    +  L   G+ K   +  L + Y  ++L+   V D+  ++ +L+     P     +
Sbjct:   180 SFNQKVRLLLLHGIPKEKISHVLNKVYLNKLLYQKSVEDIERLISFLE-----PFGGIGI 234

Query:   219 LERYPEVLGFKLEGTMSTSVAYLVGI-GVSRREIGGVLTRYPDILGMRVGRVIKPFVEYL 277
             + R P +L   L+  +   V ++  + G      G VL R P IL   V  +    VE+L
Sbjct:   235 IARRPVILNSDLDSQLIPRVDFIRNLSGEDDFATGTVLRRLPAILSYSVEHM-NGQVEFL 293

Query:   278 ESL-GIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGI 336
             +S  G+    V +++   P ++    E +++P +E L E       +   +++ P I+ +
Sbjct:   294 KSFAGLTSEQVFKIVHVFPNVISTSKERKLRPRIEFLKECGFDSPGMFKFLSKAPLILAL 353

Query:   337 ---DLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLKSCGFFLQ 393
                +L  KL G   L+       +K+   +   M  V   S+  + R +    S G   +
Sbjct:   354 SENNLSHKL-G--FLVKIGYKHRTKE---LAFAMGAVTRTSSDNMQRVIGLYLSYGLSFE 407

Query:   394 QVRQIVVECPQVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHK-M 452
              +  +  + PQVL  N   ++   +Y    M R +++L+ FPAF  Y L+S IK R++  
Sbjct:   408 DILAMSTKHPQVLQYNYTSLEEKLEYLIEYMGREVEELLAFPAFLGYKLDSRIKHRYEEK 467

Query:   453 IARKGLQCSLSWLLNCSDEKFKERMNYDTIDL 484
             +  +G   SL+ LL  S E+F +    D I++
Sbjct:   468 LKSRGENMSLNKLLTVSAERFSKAA--DNIEM 497

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2056745 EMB93 "EMBRYO DEFECTIVE 93" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 3.2e-12, P = 3.2e-12
 Identities = 55/219 (25%), Positives = 111/219 (50%)

Query:   259 PDILGMRVGRVIKPFVE-YLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLL-EF 316
             P +    +  V+   VE  L S G+ R AV R+++  P +L    E  + P +  L  E 
Sbjct:    54 PSLRSAPISSVVS--VETLLSSTGLSRPAVGRILDMFPDLLTSDPESEILPVLRFLSNEI 111

Query:   317 SVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNS 376
             S+ ++ +P  +++ P ++   +  +L    + L + +    +D  +    +  V N   +
Sbjct:   112 SISEQDIPKSISRCPRLLISSVDYQLRPALTFLKT-LGFVGRDTITSRNTVLLVSNVERT 170

Query:   377 AVTRHVDFLKS-CGFFLQQVRQIVVECPQVLALNLDIMKL-SFDYFQREMQRPLDDLVVF 434
              + + +++L+   GF  ++V ++VV  P +L  ++D   +   ++F  EM+  + +L  F
Sbjct:   171 LIPK-IEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKVEFFIEEMRGDVKELKRF 229

Query:   435 PAFFTYGLESTIKPRHKMIARKGLQCSLSWLLNCSDEKF 473
             P +F++ LE  IKPRH+++   G+   LS +L  SD +F
Sbjct:   230 PQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQF 268

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0071452 "cellular response to singlet oxygen" evidence=IGI

TAIR|locus:2062328 AT2G34620 "AT2G34620" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 5.4e-12, P = 5.4e-12
 Identities = 70/277 (25%), Positives = 126/277 (45%)

Query:   208 LDIKPNDIPRVLERYP--EVLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMR 265
             L  KP  I   L  +P   V    +   M   +  L  +G+   + G  L+  P +    
Sbjct:    27 LSTKPTTIKTNLHSHPLFTVADQTVTLQMKEKILCLELMGI---DSGKALSLNPCLCSAP 83

Query:   266 VGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLL-EFSVRKEALP 324
             +   I+  + +L+S GI    + R++   P IL   +   + P    L  +  V + A  
Sbjct:    84 LDS-IQSVLHFLQSKGIYPNDLPRILGMCPKILTSDVRTELYPVFMFLSNDLHVPENAFR 142

Query:   325 VVVAQYPEII--GID--LKPKLLGQQSLLNSAIDSSSKDFGSIVEKMP-QVVNASNSAVT 379
              V+ + P ++   ++  LKP L   Q L         KD  ++  + P  +V++    + 
Sbjct:   143 RVIKKCPRLLISSVEDQLKPALFYLQRL-------GLKDLEALAYQDPILLVSSVEHTLI 195

Query:   380 RHVDFLKSCGFFLQQVRQIVVECPQVLALNLDI-MKLSFDYFQREMQRPLDDLVVFPAFF 438
               + FL+S GF   +   +++ CP +   +++   K   DYF  E++  L++L  FP +F
Sbjct:   196 PKLRFLESIGFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMSEIKGKLENLKEFPQYF 255

Query:   439 TYGLESTIKPRHKMIARKGLQCSLSWLLNCSDEKFKE 475
              + LE  IKPRH     +GL+  LS +L  +DE+F++
Sbjct:   256 AFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEFEQ 292

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023645001 SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (523 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	519
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	0.0
pfam02536	345	pfam02536, mTERF, mTERF	2e-99

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score =  759 bits (1961), Expect = 0.0
 Identities = 299/450 (66%), Positives = 364/450 (80%), Gaps = 6/450 (1%)

Query: 73  RLGRKQGGSSSLYSRPSI----LEMKNERMANRAKVYDFLQGIGIVPDELDGLELPVTVE 128
            L  KQ  S SLY RPS+    LEMK E++ NR KV DFL+GIGI PDELDGLELP TV+
Sbjct: 31  PLRAKQSSSPSLYERPSVTWGLLEMKKEKLVNREKVLDFLRGIGIDPDELDGLELPSTVD 90

Query: 129 VMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTEFLRRYPQ 188
           VMRERV+FLH LGLTIEDIN YPLVLGCSVKKNMIPVLDYL KLGV +S+  E LRRYPQ
Sbjct: 91  VMRERVEFLHKLGLTIEDINEYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQ 150

Query: 189 VLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVSR 248
           VLH+SVVVDLAPVVKYLQGLD+K  DIPRVLERYPE+LGFKLEGTMSTSVAYLV IGV+ 
Sbjct: 151 VLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAP 210

Query: 249 REIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGLEERVKP 308
           R+IG +LTR+P+ILGMRVG  IKP V+YLESLG+PRLAVAR++EK+PYILGF LEE VKP
Sbjct: 211 RDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKP 270

Query: 309 NVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMP 368
           NVE LLEF VRKEALP V+AQYP+I+G+DLK KL  QQ  L S +    +DFG ++EK+P
Sbjct: 271 NVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLP 330

Query: 369 QVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQREMQRPL 428
           Q+V+ + +   +HV+FL+  GF  Q V ++VV CPQ+LALNL+IMK S ++F++EM+RPL
Sbjct: 331 QIVSLNRNVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKRPL 390

Query: 429 DDLVVFPAFFTYGLESTIKPRHKMIARKGLQCSLSWLLNCSDEKFKERMNYDTIDLEEMD 488
            +LV FPA+FTYGLES IKPR++ +A+KG++CSL+W LNCSD+KF++RM+ D I+ EEM+
Sbjct: 391 KELVEFPAYFTYGLESRIKPRYERVAKKGIKCSLAWFLNCSDDKFEQRMSGDFIEGEEME 450

Query: 489 AMPSFDMNTLMEQRSDESASEYEEDSDDEY 518
             P F M   +E    ES S+ E+D DD+ 
Sbjct: 451 --PLFSMGGKLEMPGSESVSDEEDDDDDDE 478

Length = 487

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score =  303 bits (777), Expect = 2e-99
 Identities = 106/352 (30%), Positives = 179/352 (50%), Gaps = 15/352 (4%)

Query: 128 EVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTEFLRRYP 187
             +   + F  +L  TI  I +YPL+LG   +KN+ P L +L   G  KS  T+ +   P
Sbjct: 1   LSLLRSLGFTDSLISTI--IRDYPLLLGADAEKNLQPKLQFLQSRGASKSELTKIVSTVP 58

Query: 188 QVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVS 247
           ++L    V  ++ V  +L+ + +   D    LE+YPE L     G    +V+ L  +GV 
Sbjct: 59  KILGKKGVKSISSVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVP 118

Query: 248 RR-EIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGLEERV 306
            +     +++R   + G     V +  ++ +  +G       R+I K+P +L +  ++ +
Sbjct: 119 PKLLFSLLISRPRPVCGK---EVFEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTI 175

Query: 307 KPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEK 366
           KPNVE L       E +  ++ + PE++G   K KL  Q+ L    +     +F S+++K
Sbjct: 176 KPNVEFLKSLGFSVEDVWAILKKCPELLGSSEKKKLQTQEILKTCGL----LEFLSVIKK 231

Query: 367 MPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQREMQR 426
           MPQ V+ S   +   ++FL   GF  +++ ++V  CPQ+L L+++ +K   ++  +EM  
Sbjct: 232 MPQFVSYSEQKILNKIEFLLGLGFSREEIAKMVKRCPQLLGLSVEKVKKKTEFLVKEMNW 291

Query: 427 PLDDLVVFPAFFTYGLESTIKPR---HKMIARKGLQ--CSLSWLLNCSDEKF 473
           PL +LV FP  F Y LE  IKPR    K +  KG     SLS +L C+DE+F
Sbjct: 292 PLKELVEFPQVFGYSLEKRIKPRCNVVKALMSKGKSILPSLSSMLKCTDEEF 343

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	519
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
KOG1267	413	consensus Mitochondrial transcription termination	99.97
KOG1267	413	consensus Mitochondrial transcription termination	99.87
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.95
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.49
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	95.23
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	86.44
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	83.96

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=1.2e-90  Score=744.04  Aligned_cols=439  Identities=68%  Similarity=1.126  Sum_probs=429.8

Q ss_pred             cCCCCCCCCCCCh----hhHhhHHHHhhhhhHHHHHHhCCCCccccCCccCCCChHHHHHHHHHHHhCCCCccccccCCc
Q 010056           77 KQGGSSSLYSRPS----ILEMKNERMANRAKVYDFLQGIGIVPDELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPL  152 (519)
Q Consensus        77 ~~~~~~~~~~~p~----~~~~~~~~~~~~~~vv~yL~~~Gi~~~~l~~l~~p~~~d~v~~~l~~L~~lGls~~~i~~~P~  152 (519)
                      ++++++++|.+|+    +++++++++++|+.+++||+++||+++++.++.+|.+++.++++++||+++|++.++|++||+
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgi~~~~l~~~~~p~~~~~~~~~l~~L~s~G~~~~~i~~~P~  114 (487)
T PLN03196         35 KQSSSPSLYERPSVTWGLLEMKKEKLVNREKVLDFLRGIGIDPDELDGLELPSTVDVMRERVEFLHKLGLTIEDINEYPL  114 (487)
T ss_pred             ccCCCCccccCCchHHHHHHhhhhhhhhHHHHHHHHHHcCCCchhhhccCCCccHHHHHHHHHHHHHcCCChHHhccCcH
Confidence            4566668999999    999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccchHHHHHHHhhCCCChhHHHHHHhhcCcccccccccchHHHHHHHHhcCCCCCChhHHhhhCcccccccccc
Q 010056          153 VLGCSVKKNMIPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEG  232 (519)
Q Consensus       153 lL~~s~~~~l~p~l~~L~~lGls~~~i~~ll~~~P~iL~~s~~~~l~p~v~fL~~lG~s~~~I~~il~~~P~lL~~s~e~  232 (519)
                      +|++++++++.|+++||.++|+++.+|++++.++|++|++++++++.|+++||+++|++.++|++++.++|++|++++++
T Consensus       115 iL~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~~e~  194 (487)
T PLN03196        115 VLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEG  194 (487)
T ss_pred             HhhcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHhCCChhHHHHHHhhCccccccccccchhhHHHHHHHhCCChHHHHHHHHhCCcccccccccchhhhHHH
Q 010056          233 TMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVES  312 (519)
Q Consensus       233 ~l~p~v~fL~~lGv~~~~I~~ll~~~P~lL~~s~e~~l~p~v~~L~~lG~~~~~i~~iI~~~P~iL~~s~e~~l~~~v~~  312 (519)
                      ++.|+++||+++|++.++|++++.++|++|+++++++++|+++||+++|++.++|++++.++|++|+++++++++|++++
T Consensus       195 ~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~  274 (487)
T PLN03196        195 TMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVEC  274 (487)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCccHHHHHhhCCcccccCcchhhhhHHHhhhhhcCCChhhHHHHHHhhhhhhhcChhHHHHhHHHHHHhCCcH
Q 010056          313 LLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLKSCGFFL  392 (519)
Q Consensus       313 L~~lGv~~~~l~~vI~~~P~iL~~s~~~kl~~~~~~L~~~lG~s~~~~~~~v~k~P~iL~~s~~~l~~kv~fL~~lG~s~  392 (519)
                      |+++|++++++..+|+++|.+++.++++++.++++|+.+.+||+++++.++++++|+++++|.+++++|++||+++||+.
T Consensus       275 L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~lSe~kl~~kvefL~~~Gls~  354 (487)
T PLN03196        275 LLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALKHVEFLRGRGFSA  354 (487)
T ss_pred             HHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhcccHHHHHHHHHHHHHcCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCchhccCHHHHHHHHHHHHHHhCCChhhHhhcCcccccCccccchHHHHHHHHcCCCCCcchhhccChHH
Q 010056          393 QQVRQIVVECPQVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGLQCSLSWLLNCSDEK  472 (519)
Q Consensus       393 e~I~~mv~r~P~lL~~S~e~Lk~k~~fL~~~mg~~~~~i~~~P~~L~ySLekRI~PR~~~L~~kGl~~sl~~~l~~sd~~  472 (519)
                      ++|..||+++|++|++|.++|++|++||+++||+++++|++||+||+||||+||+|||++|++||+++++.|+++|||++
T Consensus       355 edI~~mv~k~P~lL~~S~~~l~~k~dFlvneMg~~~~~Iv~fP~~LsySLEkRI~PR~~~L~~kGl~~sL~~~L~~sd~~  434 (487)
T PLN03196        355 QDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVAKKGIKCSLAWFLNCSDDK  434 (487)
T ss_pred             HHHHHHHHhCCceeeccHHHHHHHHHHHHHHhCCCHHHHHhChHHhccChhhhhHHHHHHHHHcCCCCCHHHHhccCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccccccccccCCccccCcccccCCCCcccccccCCccc
Q 010056          473 FKERMNYDTIDLEEMDAMPSFDMNTLMEQRSDESASEYEEDSDDE  517 (519)
Q Consensus       473 F~~r~v~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  517 (519)
                      |++||+.+|.|+++++  |+|+|||++++|++++++|||||+|||
T Consensus       435 F~~r~v~~y~e~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (487)
T PLN03196        435 FEQRMSGDFIEGEEME--PLFSMGGKLEMPGSESVSDEEDDDDDD  477 (487)
T ss_pred             HHHHHhhhcccccccC--CCcccCCcccCCCCccccCcccccchH
Confidence            9999999999999999  999999999999999999999775444

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=1e-55  Score=458.31  Aligned_cols=335  Identities=33%  Similarity=0.611  Sum_probs=267.6

Q ss_pred             HHHHhCCCCccccc----cCCcccccccccchHHHHHHHhhCCCChhHHHHHHhhcCcccccccccchHHHHHHHHhcCC
Q 010056          135 DFLHNLGLTIEDIN----NYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDI  210 (519)
Q Consensus       135 ~~L~~lGls~~~i~----~~P~lL~~s~~~~l~p~l~~L~~lGls~~~i~~ll~~~P~iL~~s~~~~l~p~v~fL~~lG~  210 (519)
                      ++|+++||++++|.    ++|.+|.+++++++.|+++||.+.|++..++++++.++|++|..++++++.|+++||+++|+
T Consensus         2 ~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~   81 (345)
T PF02536_consen    2 DLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGL   81 (345)
T ss_dssp             HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS
T ss_pred             hHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcC
Confidence            57899999999985    69999999999999999999999999999999999999999999999899999999999999


Q ss_pred             CCCChhHHhhhCccccccccccchhhHHHHHHHhCCChhHHHHHHhhCccccccccccchhhHHHHHHHhCCChHHHHHH
Q 010056          211 KPNDIPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARL  290 (519)
Q Consensus       211 s~~~I~~il~~~P~lL~~s~e~~l~p~v~fL~~lGv~~~~I~~ll~~~P~lL~~s~e~~l~p~v~~L~~lG~~~~~i~~i  290 (519)
                      +++++.+++.++|++|..+.++++.++++||+++|++.+.+.+++..+|.++...  +++++.++++.++|++++++.++
T Consensus        82 s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l~~lG~~~~~~~~v  159 (345)
T PF02536_consen   82 SDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSS--EKIKERVEFLKELGFDPEKIGRV  159 (345)
T ss_dssp             -HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS---HHHHCHHHHHCCCTSSHHHHCCC
T ss_pred             CHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccch--hHHHHHHHHHHHhCCCchhhccc
Confidence            9999999999999999999888999999999999999998889998888876665  58999999999999999999999


Q ss_pred             HHhCCcccccccccchhhhHHHHHhhhcCCccHHHHHhhCCcccccCcchhhhhHHHhhhhhcCCChhhHHHHHHhhhhh
Q 010056          291 IEKKPYILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQV  370 (519)
Q Consensus       291 I~~~P~iL~~s~e~~l~~~v~~L~~lGv~~~~l~~vI~~~P~iL~~s~~~kl~~~~~~L~~~lG~s~~~~~~~v~k~P~i  370 (519)
                      +.++|+++..+.++++++++++|+++|++.+++..++.++|.++..+.+..++....++ ...|...+   +++.++|++
T Consensus       160 i~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~-~~~~~~~~---~~i~~~p~i  235 (345)
T PF02536_consen  160 IAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLL-SSGGVEEE---RVIKKFPQI  235 (345)
T ss_dssp             HHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC------------------------------
T ss_pred             ccccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceeccccccccccccccc-cccccccc---ccccccccc
Confidence            99999999888888999999999999999999999999999999999988777766665 44444444   889999999


Q ss_pred             hhcChhHHHHhHHHHHHhCCcHHHHHHHHHhcCchhccCHHHHHHHHHHHHHHhCCChhhHhhcCcccccCccccchHH-
Q 010056          371 VNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPR-  449 (519)
Q Consensus       371 L~~s~~~l~~kv~fL~~lG~s~e~I~~mv~r~P~lL~~S~e~Lk~k~~fL~~~mg~~~~~i~~~P~~L~ySLekRI~PR-  449 (519)
                      +.++.+++..+++||.++||+.++|++|+.++|++|++|.+++++|++||+++||++.++|+++|++|+||||+||+|| 
T Consensus       236 l~~~~~~l~~~i~~L~~lG~s~~ei~~mv~~~P~iL~~s~e~l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR~  315 (345)
T PF02536_consen  236 LSLSEEKLKPKIEFLQSLGFSEEEIAKMVRRFPQILSYSIEKLKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPRY  315 (345)
T ss_dssp             -THHHHHHHHHHHHHHTTT--HHHHHHHHHHSGGGGGS-HHHHHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHHHH
T ss_pred             cccchHhHHHHHHHHHHhcCcHHHHHHHHHhCcchhhcchhhhhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhhHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             --HHHHHHcC--CCCCcchhhccChHHHHH
Q 010056          450 --HKMIARKG--LQCSLSWLLNCSDEKFKE  475 (519)
Q Consensus       450 --~~~L~~kG--l~~sl~~~l~~sd~~F~~  475 (519)
                        |++|+++|  .++++.+++++||++|++
T Consensus       316 ~~~~~l~~~g~~~~~sl~~~l~~s~~~F~~  345 (345)
T PF02536_consen  316 EVLKVLKSKGLIINPSLSSMLSCSDEEFLK  345 (345)
T ss_dssp             HHHHTT--TTTGGGGGS-HHHHHHHHHHT-
T ss_pred             HHHHHHHHCcCCCCCCHHHHhhccHHHhcC
Confidence              56788999  679999999999999974

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=6.2e-52  Score=444.95  Aligned_cols=347  Identities=26%  Similarity=0.493  Sum_probs=318.5

Q ss_pred             CCCChhhHhhHHHHhhhhhHHHHHHhCCCCccccCCcc--CCCChH-HHHHHHHHHHhCCCCccccc----cCCcccccc
Q 010056           85 YSRPSILEMKNERMANRAKVYDFLQGIGIVPDELDGLE--LPVTVE-VMRERVDFLHNLGLTIEDIN----NYPLVLGCS  157 (519)
Q Consensus        85 ~~~p~~~~~~~~~~~~~~~vv~yL~~~Gi~~~~l~~l~--~p~~~d-~v~~~l~~L~~lGls~~~i~----~~P~lL~~s  157 (519)
                      +.+|+.++..++++       +||+++|++.+++..++  +.++++ .++++++||+++|++.++|+    ++|.+|+++
T Consensus        83 ~~~p~~~~~~~~~l-------~~L~s~G~~~~~i~~~P~iL~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~s  155 (487)
T PLN03196         83 LELPSTVDVMRERV-------EFLHKLGLTIEDINEYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHAS  155 (487)
T ss_pred             cCCCccHHHHHHHH-------HHHHHcCCChHHhccCcHHhhcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceeccc
Confidence            66788888777664       89999999999999876  345655 68899999999999999986    899999999


Q ss_pred             cccchHHHHHHHhhCCCChhHHHHHHhhcCcccccccccchHHHHHHHHhcCCCCCChhHHhhhCccccccccccchhhH
Q 010056          158 VKKNMIPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTS  237 (519)
Q Consensus       158 ~~~~l~p~l~~L~~lGls~~~i~~ll~~~P~iL~~s~~~~l~p~v~fL~~lG~s~~~I~~il~~~P~lL~~s~e~~l~p~  237 (519)
                      +++++.|+++||+++|+++++|.+++.++|++|+.+++.++.|+++||+++|++.++|++++.++|++|+++++++++|+
T Consensus       156 ve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~  235 (487)
T PLN03196        156 VVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPK  235 (487)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCChhHHHHHHhhCccccccccccchhhHHHHHHHhCCChHHHHHHHHhCCcccccccccchhhhHHHHH-hh
Q 010056          238 VAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLL-EF  316 (519)
Q Consensus       238 v~fL~~lGv~~~~I~~ll~~~P~lL~~s~e~~l~p~v~~L~~lG~~~~~i~~iI~~~P~iL~~s~e~~l~~~v~~L~-~l  316 (519)
                      ++||+++|++.++|++++.++|++|+++++++++|++++|.++|++++++..+|.++|.++++++++++.+++++|. ++
T Consensus       236 v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~l  315 (487)
T PLN03196        236 VDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKL  315 (487)
T ss_pred             HHHHHHcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999996 69


Q ss_pred             hcCCccHHHHHhhCCcccccCcchhhhhHHHhhhhhcCCChhhHHHHHHhhhhhhhcChhHHHHhHHHHHH-hCCcHHHH
Q 010056          317 SVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLKS-CGFFLQQV  395 (519)
Q Consensus       317 Gv~~~~l~~vI~~~P~iL~~s~~~kl~~~~~~L~~~lG~s~~~~~~~v~k~P~iL~~s~~~l~~kv~fL~~-lG~s~e~I  395 (519)
                      |++++++..+++++|++++++. +++..+++||. .+||+.+++.+||+++|+++++|.++++.|++||++ ||++.++|
T Consensus       316 G~s~e~i~~~v~k~P~il~lSe-~kl~~kvefL~-~~Gls~edI~~mv~k~P~lL~~S~~~l~~k~dFlvneMg~~~~~I  393 (487)
T PLN03196        316 KIDPEDFGRVIEKLPQIVSLNR-NVALKHVEFLR-GRGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKRPLKEL  393 (487)
T ss_pred             CCCHHHHHHHHHhcchhhcccH-HHHHHHHHHHH-HcCCCHHHHHHHHHhCCceeeccHHHHHHHHHHHHHHhCCCHHHH
Confidence            9999999999999999999986 57888899995 699999999999999999999999999999999998 99999997


Q ss_pred             HHHHHhcCchhccCHH-HHHHHHHHHHHHhCCChhhHhhcCcccccCccccchHHH
Q 010056          396 RQIVVECPQVLALNLD-IMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRH  450 (519)
Q Consensus       396 ~~mv~r~P~lL~~S~e-~Lk~k~~fL~~~mg~~~~~i~~~P~~L~ySLekRI~PR~  450 (519)
                          .++|++|+||+| +|+||+++|.. .|+..    .-..+|.+| |++..-|+
T Consensus       394 ----v~fP~~LsySLEkRI~PR~~~L~~-kGl~~----sL~~~L~~s-d~~F~~r~  439 (487)
T PLN03196        394 ----VEFPAYFTYGLESRIKPRYERVAK-KGIKC----SLAWFLNCS-DDKFEQRM  439 (487)
T ss_pred             ----HhChHHhccChhhhhHHHHHHHHH-cCCCC----CHHHHhccC-HHHHHHHH
Confidence                899999999999 89999999775 67631    122445665 54665554

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=5.7e-39  Score=333.03  Aligned_cols=305  Identities=28%  Similarity=0.537  Sum_probs=232.4

Q ss_pred             HHHHhCCCCccccCCcc--CC----CChH-HHHHHHHHHHhCCCCccccc----cCCcccccccccchHHHHHHHhhCCC
Q 010056          106 DFLQGIGIVPDELDGLE--LP----VTVE-VMRERVDFLHNLGLTIEDIN----NYPLVLGCSVKKNMIPVLDYLGKLGV  174 (519)
Q Consensus       106 ~yL~~~Gi~~~~l~~l~--~p----~~~d-~v~~~l~~L~~lGls~~~i~----~~P~lL~~s~~~~l~p~l~~L~~lGl  174 (519)
                      ++|++.|++...+.++.  .|    ++++ .+.++++||.+.|++..+|+    ++|.+|..+.++++.|.++||+++|+
T Consensus         2 ~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~   81 (345)
T PF02536_consen    2 DLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGL   81 (345)
T ss_dssp             HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS
T ss_pred             hHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcC
Confidence            56888899988877753  22    3444 78999999999999999986    79999999999999999999999999


Q ss_pred             ChhHHHHHHhhcCcccccccccchHHHHHHHHhcCCCCCChhHHhhhCccccccccccchhhHHHHHHHhCCChhHHHHH
Q 010056          175 RKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVSRREIGGV  254 (519)
Q Consensus       175 s~~~i~~ll~~~P~iL~~s~~~~l~p~v~fL~~lG~s~~~I~~il~~~P~lL~~s~e~~l~p~v~fL~~lGv~~~~I~~l  254 (519)
                      +++++.+++.++|.+|..+...++.+.+.||+++|++.+.+.+++..+|.++...  +++.+.++++.++|+++++++++
T Consensus        82 s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l~~lG~~~~~~~~v  159 (345)
T PF02536_consen   82 SDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSS--EKIKERVEFLKELGFDPEKIGRV  159 (345)
T ss_dssp             -HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS---HHHHCHHHHHCCCTSSHHHHCCC
T ss_pred             CHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccch--hHHHHHHHHHHHhCCCchhhccc
Confidence            9999999999999999998877899999999999999987888888888776655  68999999999999999999999


Q ss_pred             HhhCccccccccccchhhHHHHHHHhCCChHHHHHHHHhCCcccccccccchhhhHHHHHhhhcCCccHHHHHhhCCccc
Q 010056          255 LTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEII  334 (519)
Q Consensus       255 l~~~P~lL~~s~e~~l~p~v~~L~~lG~~~~~i~~iI~~~P~iL~~s~e~~l~~~v~~L~~lGv~~~~l~~vI~~~P~iL  334 (519)
                      +.++|+++..+.+++++|+++||+++|++.+++.+++.++|++++.++++.+++...++...|...+   .++.++|.++
T Consensus       160 i~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~---~~i~~~p~il  236 (345)
T PF02536_consen  160 IAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEE---RVIKKFPQIL  236 (345)
T ss_dssp             HHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC------------------------------
T ss_pred             ccccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceeccccccccccccccccccccccc---cccccccccc
Confidence            9999999999999999999999999999999999999999999999998666665555544454444   8899999999


Q ss_pred             ccCcchhhhhHHHhhhhhcCCChhhHHHHHHhhhhhhhcChhHHHHhHHHHHH-hCCcHHHHHHHHHhcCchhccCHH-H
Q 010056          335 GIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLKS-CGFFLQQVRQIVVECPQVLALNLD-I  412 (519)
Q Consensus       335 ~~s~~~kl~~~~~~L~~~lG~s~~~~~~~v~k~P~iL~~s~~~l~~kv~fL~~-lG~s~e~I~~mv~r~P~lL~~S~e-~  412 (519)
                      .++. +++..+.++|. .+|++.+++.+|+.++|+++++|.+++++|++||.+ +|++.++|    .++|++|+||+| +
T Consensus       237 ~~~~-~~l~~~i~~L~-~lG~s~~ei~~mv~~~P~iL~~s~e~l~~k~~fl~~~m~~~~~~i----~~~P~~l~~sLe~r  310 (345)
T PF02536_consen  237 SLSE-EKLKPKIEFLQ-SLGFSEEEIAKMVRRFPQILSYSIEKLKPKFEFLVKEMGLPLEEI----VEFPQYLSYSLEKR  310 (345)
T ss_dssp             THHH-HHHHHHHHHHH-TTT--HHHHHHHHHHSGGGGGS-HHHHHHHHHHHHHCCT--HHHH----HHSCHHHCS-HHHH
T ss_pred             ccch-HhHHHHHHHHH-HhcCcHHHHHHHHHhCcchhhcchhhhhHHHHHHHHHhCcCHHHH----hhCCceeEechhhh
Confidence            9884 57888999994 599999999999999999999999999999999998 99999998    799999999999 7


Q ss_pred             HHHHHHHHH
Q 010056          413 MKLSFDYFQ  421 (519)
Q Consensus       413 Lk~k~~fL~  421 (519)
                      |+||++++.
T Consensus       311 i~PR~~~~~  319 (345)
T PF02536_consen  311 IKPRYEVLK  319 (345)
T ss_dssp             HHHHHHHHH
T ss_pred             hhhHHHHHH
Confidence            999965554

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.97  E-value=2.3e-30  Score=274.93  Aligned_cols=317  Identities=28%  Similarity=0.489  Sum_probs=281.6

Q ss_pred             CCChHHHHHHHHHHHhCCCCccccc----cCCcccccccccchHHHHHHHhhCCCChhHHHHHHhhcCcccccccccchH
Q 010056          124 PVTVEVMRERVDFLHNLGLTIEDIN----NYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVVDLA  199 (519)
Q Consensus       124 p~~~d~v~~~l~~L~~lGls~~~i~----~~P~lL~~s~~~~l~p~l~~L~~lGls~~~i~~ll~~~P~iL~~s~~~~l~  199 (519)
                      ..+++.+   +.+|+++|++..+|.    .+|.++.++.++.+.+++.+|...|++.+++.+++...|.+|..+...++.
T Consensus        88 ~~~p~s~---~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~~~~il~~~~~~~~~  164 (413)
T KOG1267|consen   88 SVNPSSV---LSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSELSSIVSVVPKILLKSKGESLS  164 (413)
T ss_pred             ccCcHHH---HHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccccchhhhccHHHHHhhcCCchh
Confidence            4456655   889999999999986    689999999999999999999999999999999999999999988878999


Q ss_pred             HHHHHHHhcC--CCCCChhHHhhhCccccccccccchhhHHHHHHHhCCChhHHHHHHhhCccccccccccchhhHHHHH
Q 010056          200 PVVKYLQGLD--IKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYL  277 (519)
Q Consensus       200 p~v~fL~~lG--~s~~~I~~il~~~P~lL~~s~e~~l~p~v~fL~~lGv~~~~I~~ll~~~P~lL~~s~e~~l~p~v~~L  277 (519)
                      +.++|+++++  .....+.+.+...|....  .+..+. ++++++++|+..+++..++..+|.......  .+...+.++
T Consensus       165 ~~~~~l~~~~~~~~~s~~~~~~~~~~~~~~--~~~~v~-~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~--~l~~~~~~i  239 (413)
T KOG1267|consen  165 TFIEFLKSIPPELLSSVVERLLTPVPSFLL--NENSVE-RLDIRRELGVKPRLLKSLLESQPRPVLLYL--KLKARLPFL  239 (413)
T ss_pred             hHHHHhhccchhhhhhHHHHhccccccccc--cccccc-cchhhHHhCCCHHHHHHHHhcCccceeeeh--hhhhhhhhH
Confidence            9999999985  777778877777764332  223344 889999999999999999999999987654  578888999


Q ss_pred             HHhCCChHHHHHHHHhCCcccccccccchhhhHHHHHhhhcCCccHHHHHhhCCcccccCcchhhhhHHHhhhhhcCCCh
Q 010056          278 ESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSS  357 (519)
Q Consensus       278 ~~lG~~~~~i~~iI~~~P~iL~~s~e~~l~~~v~~L~~lGv~~~~l~~vI~~~P~iL~~s~~~kl~~~~~~L~~~lG~s~  357 (519)
                      .++|+.+..  +++.+.|.+++++.++++++++++|+++|++.++++.|++++|++|+++.+.++.....++..     .
T Consensus       240 ~~~g~~p~~--~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s~~~~~~~~~~~~~~-----~  312 (413)
T KOG1267|consen  240 LTLGFDPKT--REFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYSVKKNLKTTEYLLKN-----P  312 (413)
T ss_pred             HHhccCCch--hHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEeehhhhhHHHHHHHhc-----c
Confidence            999987766  788899999999999999999999999999999999999999999999988776666555533     2


Q ss_pred             hhHHHHHHhhhhhhhcChhHHHHhHHHHHHhCCcHHHHHHHHHhcCchhccCHH-HHHHHHHHHHHHhCCChhhHhhcCc
Q 010056          358 KDFGSIVEKMPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLD-IMKLSFDYFQREMQRPLDDLVVFPA  436 (519)
Q Consensus       358 ~~~~~~v~k~P~iL~~s~~~l~~kv~fL~~lG~s~e~I~~mv~r~P~lL~~S~e-~Lk~k~~fL~~~mg~~~~~i~~~P~  436 (519)
                      ++    +.++|+++.++..++..+++|+...|++..++..|+.++|+++.+|.+ .++.+.+|+.+.|+++.+.++.+|+
T Consensus       313 ~~----~~k~p~~l~~s~~~l~~~ie~l~~~g~~~~q~~~~~~~~Pq~l~~s~~~~~~~~~~~~~~~~~~p~~~~~~~p~  388 (413)
T KOG1267|consen  313 KH----ILKFPQLLRSSEDKLKPRIEFLLSLGFSDVQILEMVKRFPQYLSFSLEKILKRKYEYLLKGLLRPLSALVSFPA  388 (413)
T ss_pred             hh----hhhhhhhhhccchhhhhhHHHHHHcCCcHHHHHHHHhhccHHhhhhHHhhhhhhHHHHHHHcCchHHHHhccch
Confidence            33    889999999999999999999999999999999999999999999999 8999999999999999999999999


Q ss_pred             ccccCccccchHHHHHHHHcCCC
Q 010056          437 FFTYGLESTIKPRHKMIARKGLQ  459 (519)
Q Consensus       437 ~L~ySLekRI~PR~~~L~~kGl~  459 (519)
                      ++.|++|+|++||+....++|.+
T Consensus       389 ~~~y~le~ri~pr~~~~~~~~~~  411 (413)
T KOG1267|consen  389 FFGYSLEKRIRPRFNVIKKLGVK  411 (413)
T ss_pred             hhccchhhcchhHHHHHHHHhcc
Confidence            99999999999999998877643

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.87  E-value=7.3e-22  Score=209.94  Aligned_cols=281  Identities=20%  Similarity=0.314  Sum_probs=245.6

Q ss_pred             chHHHHHHHhhCCCChhHHHHHHhhcCcccccccccchHHHHHHHHhcCCCCCChhHHhhhCccccccccccchhhHHHH
Q 010056          161 NMIPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAY  240 (519)
Q Consensus       161 ~l~p~l~~L~~lGls~~~i~~ll~~~P~iL~~s~~~~l~p~v~fL~~lG~s~~~I~~il~~~P~lL~~s~e~~l~p~v~f  240 (519)
                      +..+++++|+++|++..++.+++..+|.++..+.++.+.+.+.+|++.|++...+.+++...|.+|+.+...++.+.++|
T Consensus        90 ~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~~~~il~~~~~~~~~~~~~~  169 (413)
T KOG1267|consen   90 NPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSELSSIVSVVPKILLKSKGESLSTFIEF  169 (413)
T ss_pred             CcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccccchhhhccHHHHHhhcCCchhhHHHH
Confidence            57889999999999999999999999999999999889999999999999999999999999999998888899999999


Q ss_pred             HHHhC--CChhHHHHHHhhCccccccccccchhhHHHHHHHhCCChHHHHHHHHhCCcccccccccchhhhHHHHHhhhc
Q 010056          241 LVGIG--VSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSV  318 (519)
Q Consensus       241 L~~lG--v~~~~I~~ll~~~P~lL~~s~e~~l~p~v~~L~~lG~~~~~i~~iI~~~P~iL~~s~e~~l~~~v~~L~~lGv  318 (519)
                      +++++  .....+.+++...|.....  +..+. ++++++++|..+..+...+..+|..+....  .+...+.++..+|+
T Consensus       170 l~~~~~~~~~s~~~~~~~~~~~~~~~--~~~v~-~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~--~l~~~~~~i~~~g~  244 (413)
T KOG1267|consen  170 LKSIPPELLSSVVERLLTPVPSFLLN--ENSVE-RLDIRRELGVKPRLLKSLLESQPRPVLLYL--KLKARLPFLLTLGF  244 (413)
T ss_pred             hhccchhhhhhHHHHhcccccccccc--ccccc-cchhhHHhCCCHHHHHHHHhcCccceeeeh--hhhhhhhhHHHhcc
Confidence            99984  7777888888777743322  22344 899999999999999999999999887753  68888999999999


Q ss_pred             CCccHHHHHhhCCcccccCcchhhhhHHHhhhhhcCCChhhHHHHHHhhhhhhhcChhHHHHhHHHHHHhCCcHHHHHHH
Q 010056          319 RKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLKSCGFFLQQVRQI  398 (519)
Q Consensus       319 ~~~~l~~vI~~~P~iL~~s~~~kl~~~~~~L~~~lG~s~~~~~~~v~k~P~iL~~s~~~l~~kv~fL~~lG~s~e~I~~m  398 (519)
                      ++..  .++...|.+++.+.++.+++++.+| +.+||+.+++..|+.++|++++++.+++..+++|+.+.   .++    
T Consensus       245 ~p~~--~~~v~~~~~~~~~~~~~i~~kv~~l-~~~Gf~~~di~~~~~k~P~~l~~s~~~~~~~~~~~~~~---~~~----  314 (413)
T KOG1267|consen  245 DPKT--REFVKAPILLSYSSEKTLEPKVEVL-KSLGFSREEIWKMVKKCPQILGYSVKKNLKTTEYLLKN---PKH----  314 (413)
T ss_pred             CCch--hHHHhhhhhhcccccccHHHHHHHH-HHcCCCHHHHHHHHHhCchheEeehhhhhHHHHHHHhc---chh----
Confidence            8877  7888999999999999999999999 56799999999999999999999999999999999987   333    


Q ss_pred             HHhcCchhccCHHHHHHHHHHHHHHhCCChhhHh----hcCcccccCccccchHHHHHHHHcCC
Q 010056          399 VVECPQVLALNLDIMKLSFDYFQREMQRPLDDLV----VFPAFFTYGLESTIKPRHKMIARKGL  458 (519)
Q Consensus       399 v~r~P~lL~~S~e~Lk~k~~fL~~~mg~~~~~i~----~~P~~L~ySLekRI~PR~~~L~~kGl  458 (519)
                      +.++|+++.++..++.++++|+.. .|++..+++    .+|+++.||+++ +.+++.....+++
T Consensus       315 ~~k~p~~l~~s~~~l~~~ie~l~~-~g~~~~q~~~~~~~~Pq~l~~s~~~-~~~~~~~~~~~~~  376 (413)
T KOG1267|consen  315 ILKFPQLLRSSEDKLKPRIEFLLS-LGFSDVQILEMVKRFPQYLSFSLEK-ILKRKYEYLLKGL  376 (413)
T ss_pred             hhhhhhhhhccchhhhhhHHHHHH-cCCcHHHHHHHHhhccHHhhhhHHh-hhhhhHHHHHHHc
Confidence            699999999999999999999998 788876654    479999999998 6666654333443

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.95  E-value=0.00068  Score=43.92  Aligned_cols=30  Identities=20%  Similarity=0.425  Sum_probs=24.0

Q ss_pred             HHHHhcCchhccCHHHHHHHHHHHHHHhCCC
Q 010056          397 QIVVECPQVLALNLDIMKLSFDYFQREMQRP  427 (519)
Q Consensus       397 ~mv~r~P~lL~~S~e~Lk~k~~fL~~~mg~~  427 (519)
                      .++.++|.+|+++.++++++++||. ++|++
T Consensus         2 ~~~~~~P~il~~~~~~l~~~~~~l~-~~g~~   31 (31)
T smart00733        2 KILKKFPQILGYSEKKLKPKVEFLK-ELGFS   31 (31)
T ss_pred             chhhhCcCcccccHHHhhHHHHHHH-HcCCC
Confidence            4678888888888778888888888 68764

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.49  E-value=0.0015  Score=42.23  Aligned_cols=25  Identities=28%  Similarity=0.830  Sum_probs=9.9

Q ss_pred             hhCccccccccccchhhHHHHHHHhC
Q 010056          220 ERYPEVLGFKLEGTMSTSVAYLVGIG  245 (519)
Q Consensus       220 ~~~P~lL~~s~e~~l~p~v~fL~~lG  245 (519)
                      .++|.+|+++ +++++++++||+++|
T Consensus         5 ~~~P~il~~~-~~~l~~~~~~l~~~g   29 (31)
T smart00733        5 KKFPQILGYS-EKKLKPKVEFLKELG   29 (31)
T ss_pred             hhCcCccccc-HHHhhHHHHHHHHcC
Confidence            3344444443 333444444444333

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=95.23  E-value=0.24  Score=51.43  Aligned_cols=187  Identities=16%  Similarity=0.212  Sum_probs=92.9

Q ss_pred             ccccccccccch-hhHHHHHH-HhCCChHHHHHHHHhCCccccccc---ccchhhhHHHHHhhhcCCccHHHHH------
Q 010056          259 PDILGMRVGRVI-KPFVEYLE-SLGIPRLAVARLIEKKPYILGFGL---EERVKPNVESLLEFSVRKEALPVVV------  327 (519)
Q Consensus       259 P~lL~~s~e~~l-~p~v~~L~-~lG~~~~~i~~iI~~~P~iL~~s~---e~~l~~~v~~L~~lGv~~~~l~~vI------  327 (519)
                      -.+|+++.++.| -.++..++ ++|++.+-...++.+||..|...-   ....-+-+.|=.++.++.-+.....      
T Consensus       107 ~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~~LeLv~Wd~~LAvs~~E~~~~~~~~~~~  186 (335)
T PF11955_consen  107 RKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGRYLELVSWDPELAVSALEKRAEKEYREKR  186 (335)
T ss_pred             HHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEeecCCCCCEEEEeecCCccCcCccchhhhhcccccc
Confidence            346666666654 25666666 788888777777888888776632   0111112222112333222211111      


Q ss_pred             -----------hhCCcccccCcchhhhhHHHhhhh---------hcCCCh--hhH-HHHHHhhhhhhhcChhH--HHHhH
Q 010056          328 -----------AQYPEIIGIDLKPKLLGQQSLLNS---------AIDSSS--KDF-GSIVEKMPQVVNASNSA--VTRHV  382 (519)
Q Consensus       328 -----------~~~P~iL~~s~~~kl~~~~~~L~~---------~lG~s~--~~~-~~~v~k~P~iL~~s~~~--l~~kv  382 (519)
                                 ..+|.  +..++++...++.-+++         .-++++  ++. -++|.-.--+|+++.++  ..+++
T Consensus       187 ~~~~~~~~~Fp~~fp~--G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlHElLSLTveKr~~~~~L  264 (335)
T PF11955_consen  187 EDGFDRPLAFPVSFPK--GFRLKKKFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLHELLSLTVEKRTEVDHL  264 (335)
T ss_pred             ccccCCceeeeecCCC--CccccHHHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHHHHHHhhhhhhccHHHH
Confidence                       11222  11122233222222221         112211  111 23444445667777654  44667


Q ss_pred             HHHHH-hCCcHHHHHHHHHhcCchhccCHHHHHHHHHHHHHHhCCChhhHhhcCcccccCccccchHHHHHHHHcC
Q 010056          383 DFLKS-CGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKG  457 (519)
Q Consensus       383 ~fL~~-lG~s~e~I~~mv~r~P~lL~~S~e~Lk~k~~fL~~~mg~~~~~i~~~P~~L~ySLekRI~PR~~~L~~kG  457 (519)
                      ..|.+ +|++ +.+..++.+||.|+-.|...-. -.-||.+..... +-|-.+|.+       .++-|+.-|...|
T Consensus       265 ~~fr~ef~lp-~k~~~~l~rHPgIFYvS~kg~~-~TVfLrEAY~~~-~Liek~Pl~-------~~r~k~~~Lm~~~  330 (335)
T PF11955_consen  265 THFRKEFGLP-QKFRRLLLRHPGIFYVSLKGKR-HTVFLREAYDGG-ELIEKHPLV-------VIREKFLELMQEG  330 (335)
T ss_pred             HHHHHHhCCc-HHHHHHHHhCCCeEEEeccCCc-eEEEEeeccCCC-CCCCCCchH-------HHHHHHHHHHhhc
Confidence            77876 8887 5678888888888888875211 123444444333 334455542       3555665555554

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=86.44  E-value=0.99  Score=46.94  Aligned_cols=238  Identities=18%  Similarity=0.319  Sum_probs=118.0

Q ss_pred             hCCCChhHHHHHHhhcCccccccc---c----cchHHHHHHHH--hcCCCCCChhHHhhhCccccccccccch-hhHHHH
Q 010056          171 KLGVRKSTFTEFLRRYPQVLHSSV---V----VDLAPVVKYLQ--GLDIKPNDIPRVLERYPEVLGFKLEGTM-STSVAY  240 (519)
Q Consensus       171 ~lGls~~~i~~ll~~~P~iL~~s~---~----~~l~p~v~fL~--~lG~s~~~I~~il~~~P~lL~~s~e~~l-~p~v~f  240 (519)
                      .+|+..-.+...+.+||.++....   .    ..+-+...-|.  +..+-.+.-..++.+--.+|.++.++.| -.++..
T Consensus        46 ~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~~  125 (335)
T PF11955_consen   46 QLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIAH  125 (335)
T ss_pred             hcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCcccHHHHHH
Confidence            577755777777777777765432   0    11223222221  1221111113333444456666666555 345666


Q ss_pred             HH-HhCCChhHHHHHHhhCcccccccc---ccchhhHHHHHHHhCCChHHHHHHH-----------------HhCCcccc
Q 010056          241 LV-GIGVSRREIGGVLTRYPDILGMRV---GRVIKPFVEYLESLGIPRLAVARLI-----------------EKKPYILG  299 (519)
Q Consensus       241 L~-~lGv~~~~I~~ll~~~P~lL~~s~---e~~l~p~v~~L~~lG~~~~~i~~iI-----------------~~~P~iL~  299 (519)
                      ++ ++|++.+=...++.++|..|...-   ....-.-+.|=.++.++.-+.....                 .++|.  |
T Consensus       126 l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~~LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~--G  203 (335)
T PF11955_consen  126 LRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGRYLELVSWDPELAVSALEKRAEKEYREKREDGFDRPLAFPVSFPK--G  203 (335)
T ss_pred             HHHHcCCChhhccchhhhCCCCcEEeecCCCCCEEEEeecCCccCcCccchhhhhccccccccccCCceeeeecCCC--C
Confidence            66 567777767777777777765422   0011111111112222221111110                 11221  2


Q ss_pred             cccccchhhhHHHHHhhhc----------CCccH---HHHHhhCCcccccCcchhh-hhHHHhhhhhcCCChhhHHHHHH
Q 010056          300 FGLEERVKPNVESLLEFSV----------RKEAL---PVVVAQYPEIIGIDLKPKL-LGQQSLLNSAIDSSSKDFGSIVE  365 (519)
Q Consensus       300 ~s~e~~l~~~v~~L~~lGv----------~~~~l---~~vI~~~P~iL~~s~~~kl-~~~~~~L~~~lG~s~~~~~~~v~  365 (519)
                      +.+.++.+..++-++++-+          +++.-   ...++-.-.+|++.+++++ ......|.+.+|++ ..+..++.
T Consensus       204 ~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp-~k~~~~l~  282 (335)
T PF11955_consen  204 FRLKKKFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLP-QKFRRLLL  282 (335)
T ss_pred             ccccHHHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCc-HHHHHHHH
Confidence            2223344555554444321          11110   1234444566776666544 34556666788886 67889999


Q ss_pred             hhhhhhhcChhHHHHhHHHHHHhCCcHHHHHHHHHhcCchhccCHHHHHHHHHHHHH
Q 010056          366 KMPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQR  422 (519)
Q Consensus       366 k~P~iL~~s~~~l~~kv~fL~~lG~s~e~I~~mv~r~P~lL~~S~e~Lk~k~~fL~~  422 (519)
                      +||.|+.+|.. .....-||++ ++...   .++.++|.+.      ++.|+--|+.
T Consensus       283 rHPgIFYvS~k-g~~~TVfLrE-AY~~~---~Liek~Pl~~------~r~k~~~Lm~  328 (335)
T PF11955_consen  283 RHPGIFYVSLK-GKRHTVFLRE-AYDGG---ELIEKHPLVV------IREKFLELMQ  328 (335)
T ss_pred             hCCCeEEEecc-CCceEEEEee-ccCCC---CCCCCCchHH------HHHHHHHHHh
Confidence            99999988853 2222345555 33333   2457777764      6777666554

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=83.96  E-value=6.1  Score=37.03  Aligned_cols=21  Identities=14%  Similarity=0.188  Sum_probs=11.6

Q ss_pred             HHHHHhhCCCChhHHHHHHhh
Q 010056          165 VLDYLGKLGVRKSTFTEFLRR  185 (519)
Q Consensus       165 ~l~~L~~lGls~~~i~~ll~~  185 (519)
                      .+..|+++|++-++|..++..
T Consensus        50 ~I~~lr~~G~sL~eI~~ll~~   70 (172)
T cd04790          50 QICAYRSAGVSLEDIRSLLQQ   70 (172)
T ss_pred             HHHHHHHcCCCHHHHHHHHhc
Confidence            344555566666666655543

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	519
3opg_A	298	Crystal Structure Of Human Mitochondrial Transcript		1e-06
3m66_A	270	Crystal Structure Of Human Mitochondrial Transcript		1e-06

>pdb|3OPG|A Chain A, Crystal Structure Of Human Mitochondrial Transcription Termination Factor 3 Length = 298

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 105/273 (38%), Gaps = 53/273 (19%)
Query: 219 LERYPE----VLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFV 274
           +E++PE    +L    E  +   + +L  +G+   ++G  LT+   I    +   +K  V
Sbjct: 50  IEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRV 108
Query: 275 EYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEII 334
            YL S    +  VA+++ K P++L F +E                               
Sbjct: 109 AYLHSKNFSKADVAQMVRKAPFLLNFSVE------------------------------- 137
Query: 335 GIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLK-SCGFFLQ 393
                 +L  +       ++ S K    +V ++P+++  S   V  ++   +   GF   
Sbjct: 138 ------RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHN 191
Query: 394 QVRQIVVECPQVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMI 453
           +++ ++   P++L  N   +  +FD+    M  P   +V FP  F   L   +K RH  +
Sbjct: 192 EIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRL-FKVKERHLFL 250
Query: 454 ARKGLQ---------CSLSWLLNCSDEKFKERM 477
              G            SL  L++  DE F E +
Sbjct: 251 TYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEI 283

>pdb|3M66|A Chain A, Crystal Structure Of Human Mitochondrial Transcription Termination Factor 3 Length = 270

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 112/287 (39%), Gaps = 54/287 (18%)
Query: 205 LQGLDIKPNDIPRVLERYPE----VLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPD 260
           LQ L +   D+ ++ E++PE    +L    E  +   + +L  +G+   ++G  LT+   
Sbjct: 9   LQKLVLLGVDLSKI-EKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHA 67
Query: 261 ILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRK 320
           I    +   +K  V YL S    +  VA+++ K P++L F +E                 
Sbjct: 68  IFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVE----------------- 109
Query: 321 EALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTR 380
                               +L  +       ++ S K    +V ++P+++  S   V  
Sbjct: 110 --------------------RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKE 149
Query: 381 HVDFLK-SCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFT 439
           ++   +   GF   +++ ++   P++L  N   +  +FD+    M  P   +V FP  F 
Sbjct: 150 NMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFN 209
Query: 440 YGLESTIKPRHKMIARKGLQ---------CSLSWLLNCSDEKFKERM 477
             L   +K RH  +   G            SL  L++  DE F E +
Sbjct: 210 TRL-FKVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEI 255

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	519
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	6e-55
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	6e-31
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	3e-18
3mva_O	343	Transcription termination factor, mitochondrial; a	9e-49
3mva_O	343	Transcription termination factor, mitochondrial; a	3e-20
3mva_O	343	Transcription termination factor, mitochondrial; a	2e-06
3mva_O	343	Transcription termination factor, mitochondrial; a	2e-06
3mva_O	343	Transcription termination factor, mitochondrial; a	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  184 bits (469), Expect = 6e-55
 Identities = 54/260 (20%), Positives = 106/260 (40%), Gaps = 13/260 (5%)

Query: 234 MSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEK 293
            S ++  LV +GV   +I         +L +   + IK  + +L+ +GI    +   + K
Sbjct: 5   HSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTK 64

Query: 294 KPYILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAI 353
              I    L E +K  V  L   +  K  +  +V + P ++   ++ +L  +       +
Sbjct: 65  NHAIFSEDL-ENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKEL 122

Query: 354 DSSSKDFGSIVEKMPQVVNASNSAVTRHVDF-LKSCGFFLQQVRQIVVECPQVLALNLDI 412
           + S K    +V ++P+++  S   V  ++       GF   +++ ++   P++L  N   
Sbjct: 123 ELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMK 182

Query: 413 MKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGL---------QCSLS 463
           +  +FD+    M  P   +V FP  F   L   +K RH  +   G            SL 
Sbjct: 183 LTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLD 241

Query: 464 WLLNCSDEKFKERMNYDTID 483
            L++  DE F E +   ++ 
Sbjct: 242 KLVSIPDEIFCEEIAKASVQ 261

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  119 bits (301), Expect = 6e-31
 Identities = 37/212 (17%), Positives = 88/212 (41%), Gaps = 11/212 (5%)

Query: 132 ERVDFLHNLGLTIEDI----NNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTEFLRRYP 187
           E +  L  LG+ +  I        L+L    +K++  +L +L  +G+  +    FL +  
Sbjct: 7   ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNH 66

Query: 188 QVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVS 247
            +    +  +L   V YL   +    D+ +++ + P +L F +E   +    +   + +S
Sbjct: 67  AIFSEDLE-NLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELS 125

Query: 248 RREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGLEERVK 307
            ++   ++ R P +L   +  V +    Y   LG     +  +I + P +L    + ++ 
Sbjct: 126 VKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTAN-KMKLT 184

Query: 308 PNVESLLEFSVRKEALPV-VVAQYPEIIGIDL 338
                  +F     ++P  ++ ++P++    L
Sbjct: 185 ET----FDFVHNVMSIPHHIIVKFPQVFNTRL 212

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 83.7 bits (207), Expect = 3e-18
 Identities = 37/207 (17%), Positives = 88/207 (42%), Gaps = 19/207 (9%)

Query: 86  SRPSILEMKNERMANRAKVYDFLQGIGIVPDELDGL------ELPVTVEVMRERVDFLHN 139
           +   +L +  E+  +  ++  FL+ +GI  ++L              +E ++ RV +LH+
Sbjct: 28  AANLLLRLDFEK--DIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHS 85

Query: 140 LGLTIEDI----NNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVV 195
              +  D+       P +L  SV++    +  +  +L +      + + R P++L  S+ 
Sbjct: 86  KNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE 145

Query: 196 VDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLVG-IGVSRREIGGV 254
                +  Y   L  K N+I  ++ R P++L    +  ++ +  ++   + +    I   
Sbjct: 146 PVKENMKVYRLELGFKHNEIQHMITRIPKMLTAN-KMKLTETFDFVHNVMSIPHHII--- 201

Query: 255 LTRYPDILGMRVGRVIKPFVEYLESLG 281
             ++P +   R+ + +K    +L  LG
Sbjct: 202 -VKFPQVFNTRLFK-VKERHLFLTYLG 226

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  170 bits (432), Expect = 9e-49
 Identities = 63/328 (19%), Positives = 125/328 (38%), Gaps = 23/328 (7%)

Query: 164 PVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYP 223
            +L  L  +GV         +R P V H  +  +   +  +L         I  ++ RYP
Sbjct: 21  DLLKNLLTMGV---DIDMARKRQPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYP 76

Query: 224 EVLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILG-MRVGRVIKPFVEYLESLGI 282
             +    E  +S        I  S  EI  +L R P+          ++  +++L S+G+
Sbjct: 77  RAITRTPE-NLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGL 135

Query: 283 PRLAVARLIEKKPYILGFGLEERVKPNVESLLE------FSVRKEALPVVVAQYPEIIGI 336
            R  + RL+   P      L+   K  VE L         +   + +  ++ + P I+  
Sbjct: 136 TRKCLCRLLTNAPRTFSNSLD-LNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQ 194

Query: 337 DLKPKLLGQQSLLNSAIDSSSKDFGSIVEKM-PQVVNASNSAVTRHVDFLK----SCGFF 391
             K ++      L S  + +S++   ++     ++++ SN    R    +K    S G  
Sbjct: 195 STK-RVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCT 253

Query: 392 LQQVRQIVVECPQVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHK 451
            ++V++ V+  P V+ L         D    E    +  ++  P      +  T+K R K
Sbjct: 254 EEEVQKFVLSYPDVIFLAEKKFNDKIDCL-MEENISISQIIENPRVLDSSIS-TLKSRIK 311

Query: 452 MIARKGLQCSLS--WLLNCSDEKFKERM 477
            +   G   S     LL+ S ++++ ++
Sbjct: 312 ELVNAGCNLSTLNITLLSWSKKRYEAKL 339

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score = 91.2 bits (226), Expect = 3e-20
 Identities = 44/313 (14%), Positives = 116/313 (37%), Gaps = 42/313 (13%)

Query: 87  RPSILEMKNERMANRAKVYDFLQGIGIVPDEL------DGLELPVTVEVMRERVDFLHNL 140
           +P +    +  + N   +  FL   G   + +          +  T E + +R D    +
Sbjct: 40  QPGVF---HRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKI 96

Query: 141 GLTIEDI----NNYP-LVLGCSVKKNMIPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVV 195
             +  +I       P      +   N+   + +L  +G+ +      L   P+   +S +
Sbjct: 97  VTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNS-L 155

Query: 196 VDLAPVVKYLQ------GLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLVGI-GVSR 248
                +V++LQ      G +   + + +++ + P +L    +  +  ++ +L     ++ 
Sbjct: 156 DLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTK-RVKANIEFLRSTFNLNS 214

Query: 249 REIGGVLTR-YPDILGMRVG---RVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGLEE 304
            E+  ++     +IL +      R      E L SLG     V + +   P ++    E+
Sbjct: 215 EELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLA-EK 273

Query: 305 RVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDL---KPKL-------LGQQSLLNSAID 354
           +    ++ L+E ++    +     + P ++   +   K ++           +L  + + 
Sbjct: 274 KFNDKIDCLMEENISISQI----IENPRVLDSSISTLKSRIKELVNAGCNLSTLNITLLS 329

Query: 355 SSSKDFGSIVEKM 367
            S K + + ++K+
Sbjct: 330 WSKKRYEAKLKKL 342

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 20/135 (14%), Positives = 47/135 (34%), Gaps = 16/135 (11%)

Query: 359 DFGSIVEKMPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSFD 418
           D     ++ P V +   +       FL S G   + +  I+   P+ +    + +   +D
Sbjct: 32  DIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWD 91

Query: 419 YFQREMQRPLDD---LVVFP-AFFTYGLESTIKPR----------HKMIARKGLQCSLSW 464
            +++ +   L+    L   P +FF       ++             K + R  L  +   
Sbjct: 92  LWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCR--LLTNAPR 149

Query: 465 LLNCSDEKFKERMNY 479
             + S +  K+ + +
Sbjct: 150 TFSNSLDLNKQMVEF 164

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 8/116 (6%)

Query: 70  STVRLGRKQGGSSSLYSRPSILEMKNERM-ANRAKVYDFLQGIGIVPDELDGLE------ 122
           ST  L  ++           IL++ N+    + A + + L  +G   +E+          
Sbjct: 208 STFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDV 267

Query: 123 LPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKST 178
           + +  +   +++D L    ++I  I   P VL  S+   +   +  L   G   ST
Sbjct: 268 IFLAEKKFNDKIDCLMEENISISQIIENPRVLDSSIST-LKSRIKELVNAGCNLST 322

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 24/193 (12%), Positives = 65/193 (33%), Gaps = 27/193 (13%)

Query: 307 KPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEK 366
           +  +++LL   V    + +   + P +    +       +  L S   +S +   SI+ +
Sbjct: 20  EDLLKNLLTMGVD---IDMARKRQPGVFHRMIT-NEQDLKMFLLS-KGASKEVIASIISR 74

Query: 367 MPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQVL--ALNLDIMKLSFDYFQREM 424
            P+ +  +   +++  D  +       ++  I+   P+    + N   ++ +  +    +
Sbjct: 75  YPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFL-YSV 133

Query: 425 QRPLDDLVVF----PAFFTYGLESTIKPRHKMIARKGLQ--------------CSLSWLL 466
                 L       P  F+  L+   K   + +   GL                   ++L
Sbjct: 134 GLTRKCLCRLLTNAPRTFSNSLD-LNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFIL 192

Query: 467 NCSDEKFKERMNY 479
             S ++ K  + +
Sbjct: 193 IQSTKRVKANIEF 205

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 3e-11
 Identities = 79/511 (15%), Positives = 151/511 (29%), Gaps = 131/511 (25%)

Query: 19  PELPAFTCWRPQ--------LESLSTFGITGNHG----GAIRLIARSRYSFADRNVDASV 66
                +   R Q        L  L         G    G   +           +     
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD-----VCLSYKVQC 178

Query: 67  RNPSTV---RLGRKQGGSSSLYSRPSILEMKNERMANRAKVYDFLQGIGIVPDELDGLEL 123
           +    +    L           S  ++LEM  + +      Y          D    ++L
Sbjct: 179 KMDFKIFWLNLKNCN-------SPETVLEMLQKLL------YQIDPNWTSRSDHSSNIKL 225

Query: 124 PVTVEVMRERVDFL-----HNLGLTI-EDINNYPLV----LGCSVKKNMI-----PVLDY 168
            +    ++  +  L     +   L +  ++ N        L C   K ++      V D+
Sbjct: 226 RI--HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC---KILLTTRFKQVTDF 280

Query: 169 LGKLGVRKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPR-VLERYPEVLG 227
           L       +T    L  +   L    V  L  ++KYL   D +P D+PR VL   P  L 
Sbjct: 281 LSA----ATTTHISLDHHSMTLTPDEVKSL--LLKYL---DCRPQDLPREVLTTNPRRLS 331

Query: 228 FKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPR--- 284
                           I  S R+       +  +   ++  +I+  +  LE     +   
Sbjct: 332 ---------------IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376

Query: 285 -LAVARLIEKKPY----ILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPE--IIGI- 336
            L+V       P     ++ F + +     V  ++    +   +     + P+   I I 
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSD---VMVVVNKLHKYSLV----EKQPKESTISIP 429

Query: 337 ----DLKPKLLGQQSLLNSAIDS-------SSKDFGSIVEK----------MPQVVNASN 375
               +LK KL  + +L  S +D         S D                 +  + +   
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489

Query: 376 SAVTRHV--DFLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSF--DYFQR---EMQRPL 428
             + R V  DF     F  Q++R          ++   + +L F   Y      + +R +
Sbjct: 490 MTLFRMVFLDF----RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545

Query: 429 DDLVVFPAFFTYGLESTIKPRHKMIARKGLQ 459
           + ++ F        E+ I  ++  + R  L 
Sbjct: 546 NAILDF--LPKIE-ENLICSKYTDLLRIALM 573

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 2e-10
 Identities = 80/478 (16%), Positives = 150/478 (31%), Gaps = 133/478 (27%)

Query: 104 VYDFLQGIGIVPDELDG-LELPVTVEVMRERVDFLHNLGLTI-----EDI--NNYPLVLG 155
           V D  + I +  +E+D  +     V         L +    +     E++   NY  ++ 
Sbjct: 38  VQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96

Query: 156 CSVKKNMIPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGL-DIKPND 214
               +   P +     +  R   + +      QV     V  L P +K  Q L +++P  
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYND-----NQVFAKYNVSRLQPYLKLRQALLELRPA- 150

Query: 215 IPRVLERYPEVLGFKLEGTMSTSVAYLVGIG-------VSRREIGGVLTRYPD-ILGMRV 266
              VL          ++G +       +G G       V       V  +    I  + +
Sbjct: 151 -KNVL----------IDG-V-------LGSGKTWVALDVCLSY--KVQCKMDFKIFWLNL 189

Query: 267 GRVIKP--FVEYLESL--GIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRKEA 322
                P   +E L+ L   I     +R        L       ++  +  LL+    +  
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI---HSIQAELRRLLKSKPYENC 246

Query: 323 LPVV--VAQYPEII-GIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVT 379
           L V+  V Q  +     +L  K+L     L +       DF S        ++  +  +T
Sbjct: 247 LLVLLNV-QNAKAWNAFNLSCKIL-----LTTR-FKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 380 RHVDFLKSCGFFLQQV--------RQIVVECPQVLAL------------------NLD-- 411
                 +     L+ +        R+++   P+ L++                  N D  
Sbjct: 300 PD----EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 412 --IMKLSFDYFQ-REMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGLQCSLSWLLNC 468
             I++ S +  +  E ++  D L VFP        S   P   +        SL W    
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFP-------PSAHIPTILL--------SLIW---- 396

Query: 469 SDEKFKERMNYDTIDLEEMDAMPSFDMNTLMEQRSDESAS-------EYEEDSDDEYA 519
                     +D I  + M  +      +L+E++  ES         E +   ++EYA
Sbjct: 397 ----------FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	519
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	99.94
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.21
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	98.7
4hpz_A	463	Dtale2; DNA binding protein, N-terminal domain; 2.	88.24
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	87.72
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	80.11

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=5.9e-52  Score=428.82  Aligned_cols=305  Identities=22%  Similarity=0.346  Sum_probs=270.8

Q ss_pred             HHHHHHhCCCCccccc-cCCcccccccccchHHHHHHHhhCCCChhHHHHHHhhcCcccccccccchHHHHHHHHhcCCC
Q 010056          133 RVDFLHNLGLTIEDIN-NYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIK  211 (519)
Q Consensus       133 ~l~~L~~lGls~~~i~-~~P~lL~~s~~~~l~p~l~~L~~lGls~~~i~~ll~~~P~iL~~s~~~~l~p~v~fL~~lG~s  211 (519)
                      ++++|.++|++.+++. ++|+++..+++ +++++++||+++|++.++|++++.++|.+|.++.+ ++.|+++||+++|++
T Consensus        22 ~v~~L~s~Gl~~~~~~~~~p~l~~~s~~-~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~fL~~lG~s   99 (343)
T 3mva_O           22 LLKNLLTMGVDIDMARKRQPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLWRKIVTS   99 (343)
T ss_dssp             HHHHHHHHTCCHHHHHHHCGGGGGCSCC-CHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHHHTTTSSC
T ss_pred             HHHHHHHcCCCHHHHHHhCchhhccCcc-cHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHHHHHcCCC
Confidence            3999999999999885 79999998886 58999999999999999999999999999999965 899999999999999


Q ss_pred             CCChhHHhhhCccc-cccccccchhhHHHHHHHhCCChhHHHHHHhhCccccccccccchhhHHHHHHHhCCC------h
Q 010056          212 PNDIPRVLERYPEV-LGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIP------R  284 (519)
Q Consensus       212 ~~~I~~il~~~P~l-L~~s~e~~l~p~v~fL~~lGv~~~~I~~ll~~~P~lL~~s~e~~l~p~v~~L~~lG~~------~  284 (519)
                      ++++++++.++|++ ++.+.++++.|+++||+++|++.++|++++.++|++|+++++++ ++++++|+++|++      .
T Consensus       100 ~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~-~~~v~~L~~lgv~~g~~~p~  178 (343)
T 3mva_O          100 DLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSLGHNDPA  178 (343)
T ss_dssp             HHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHH-HHHHHHHHHHHHHTTCSCHH
T ss_pred             HHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHh-hHHHHHHHHhCCCcCCCcHH
Confidence            99999999999995 45444358999999999999999999999999999999999965 9999999987764      6


Q ss_pred             HHHHHHHHhCCcccccccccchhhhHHHHHh-hhcCCccHHHHHhhCCcccccCcchhhhhHHHhhhhhcCCChhhHHHH
Q 010056          285 LAVARLIEKKPYILGFGLEERVKPNVESLLE-FSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSI  363 (519)
Q Consensus       285 ~~i~~iI~~~P~iL~~s~e~~l~~~v~~L~~-lGv~~~~l~~vI~~~P~iL~~s~~~kl~~~~~~L~~~lG~s~~~~~~~  363 (519)
                      +.|.+++.++|++|+++ +++++++++||++ +|++++++..++++.|                                
T Consensus       179 ~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~--------------------------------  225 (343)
T 3mva_O          179 DFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPG--------------------------------  225 (343)
T ss_dssp             HHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTT--------------------------------
T ss_pred             HHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCC--------------------------------
Confidence            78999999999999999 6688888888884 7777666555554432                                


Q ss_pred             HHhhhhhhhcChhHHHHhHHHHH----HhCCcHHHHHHHHHhcCchhccCHHHHHHHHHHHHHHhCCChhhHhhcCcccc
Q 010056          364 VEKMPQVVNASNSAVTRHVDFLK----SCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFT  439 (519)
Q Consensus       364 v~k~P~iL~~s~~~l~~kv~fL~----~lG~s~e~I~~mv~r~P~lL~~S~e~Lk~k~~fL~~~mg~~~~~i~~~P~~L~  439 (519)
                          |.++..+.+.+++++.|+.    ++||+.++|.+|+.++|++|++|.++|++|++||++ ||+++++|+++|++|+
T Consensus       226 ----~~~l~~s~~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~  300 (343)
T 3mva_O          226 ----AEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLD  300 (343)
T ss_dssp             ----GGGGGCCTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGG
T ss_pred             ----hHHhhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHh
Confidence                3555666667777776665    699999999999999999999999999999999999 9999999999999999


Q ss_pred             cCccccchHHHHHHHHcCCCCCcc--hhhccChHHHHHHHhh
Q 010056          440 YGLESTIKPRHKMIARKGLQCSLS--WLLNCSDEKFKERMNY  479 (519)
Q Consensus       440 ySLekRI~PR~~~L~~kGl~~sl~--~~l~~sd~~F~~r~v~  479 (519)
                      ||+| ||+|||++|+++|+++++.  +|+++||++|+++|..
T Consensus       301 ~sle-ri~~R~~~L~~~g~~~~~~~~~~l~~s~~~F~~~~~~  341 (343)
T 3mva_O          301 SSIS-TLKSRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKK  341 (343)
T ss_dssp             SCHH-HHHHHHHHHHTTTCCSSSSCGGGGGSCHHHHHHHHHH
T ss_pred             cCHH-HHHHHHHHHHHCCCCCCCCcchhhcCCHHHHHHHHhc
Confidence            9999 9999999999999999888  9999999999999964

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=8.4e-43  Score=348.73  Aligned_cols=247  Identities=22%  Similarity=0.393  Sum_probs=216.3

Q ss_pred             hHHHHHHHHhcCCCCCChhHHhhhCccccccccccchhhHHHHHHHhCCChhHHHHHHhhCccccccccccchhhHHHHH
Q 010056          198 LAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYL  277 (519)
Q Consensus       198 l~p~v~fL~~lG~s~~~I~~il~~~P~lL~~s~e~~l~p~v~fL~~lGv~~~~I~~ll~~~P~lL~~s~e~~l~p~v~~L  277 (519)
                      -.++++||.++|++..+|.+....+|.+|++++++++.|+++||+++|++..+|++++.++|.+|++++++ ++|+++||
T Consensus         5 ~s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L   83 (270)
T 3m66_A            5 HSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL   83 (270)
T ss_dssp             HHHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence            35889999999999988877777777779999999999999999999999999999999999999999996 99999999


Q ss_pred             HHhCCChHHHHHHHHhCCcccccccccchhhhHHHHH-hhhcCCccHHHHHhhCCcccccCcchhhhhHHHhhhhhcCCC
Q 010056          278 ESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLL-EFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSS  356 (519)
Q Consensus       278 ~~lG~~~~~i~~iI~~~P~iL~~s~e~~l~~~v~~L~-~lGv~~~~l~~vI~~~P~iL~~s~~~kl~~~~~~L~~~lG~s  356 (519)
                      +++|++.+++++++.++|++|+++++ ++++++++|+ ++|++.+++.                                
T Consensus        84 ~~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~--------------------------------  130 (270)
T 3m66_A           84 HSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTR--------------------------------  130 (270)
T ss_dssp             HHTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHH--------------------------------
T ss_pred             HHcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHH--------------------------------
Confidence            99999999999999999999999988 6888888884 5666655544                                


Q ss_pred             hhhHHHHHHhhhhhhhcChhHHHHhHHHHH-HhCCcHHHHHHHHHhcCchhccCHHHHHHHHHHHHHHhCCChhhHhhcC
Q 010056          357 SKDFGSIVEKMPQVVNASNSAVTRHVDFLK-SCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQREMQRPLDDLVVFP  435 (519)
Q Consensus       357 ~~~~~~~v~k~P~iL~~s~~~l~~kv~fL~-~lG~s~e~I~~mv~r~P~lL~~S~e~Lk~k~~fL~~~mg~~~~~i~~~P  435 (519)
                           +++.++|+++..+.++++++++++. ++||+.++|.+|+.++|++|++|.++|++|++||+++||+++++|+++|
T Consensus       131 -----~ll~~~P~il~~s~e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P  205 (270)
T 3m66_A          131 -----DLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFP  205 (270)
T ss_dssp             -----HHHHHSGGGGTSCSHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCG
T ss_pred             -----HHHHhCCcceeechHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHhCc
Confidence                 4555556666666667788899875 5999999999999999999999999999999999999999999999999


Q ss_pred             cccccCccccchHHHHHHHH---cCC------CCCcchhhccChHHHHHHHhhccccc
Q 010056          436 AFFTYGLESTIKPRHKMIAR---KGL------QCSLSWLLNCSDEKFKERMNYDTIDL  484 (519)
Q Consensus       436 ~~L~ySLekRI~PR~~~L~~---kGl------~~sl~~~l~~sd~~F~~r~v~~~~~~  484 (519)
                      ++|+||+| ||+|||.+|+.   +|+      .+++.+++++||++|+++|++.+.|.
T Consensus       206 ~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~~ee  262 (270)
T 3m66_A          206 QVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQD  262 (270)
T ss_dssp             GGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSCHHH
T ss_pred             hHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCCHHH
Confidence            99999999 99999998765   565      26888999999999999999998874

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=5.1e-41  Score=346.93  Aligned_cols=302  Identities=18%  Similarity=0.255  Sum_probs=261.8

Q ss_pred             HHHHHHhCCCCccccCCc------cCCCChHHHHHHHHHHHhCCCCccccc----cCCcccccccccchHHHHHHHhhCC
Q 010056          104 VYDFLQGIGIVPDELDGL------ELPVTVEVMRERVDFLHNLGLTIEDIN----NYPLVLGCSVKKNMIPVLDYLGKLG  173 (519)
Q Consensus       104 vv~yL~~~Gi~~~~l~~l------~~p~~~d~v~~~l~~L~~lGls~~~i~----~~P~lL~~s~~~~l~p~l~~L~~lG  173 (519)
                      +++||.++|++.+.+.+.      ..|.+++.   +++||+++|+++++|+    ++|.+|+++++ ++.|+++||+++|
T Consensus        22 ~v~~L~s~Gl~~~~~~~~~p~l~~~s~~~~~~---vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~fL~~lG   97 (343)
T 3mva_O           22 LLKNLLTMGVDIDMARKRQPGVFHRMITNEQD---LKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLWRKIV   97 (343)
T ss_dssp             HHHHHHHHTCCHHHHHHHCGGGGGCSCCCHHH---HHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHHHTTTS
T ss_pred             HHHHHHHcCCCHHHHHHhCchhhccCcccHHH---HHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHHHHHcC
Confidence            589999999998877542      13455554   5999999999999986    79999999965 6999999999999


Q ss_pred             CChhHHHHHHhhcCcccccccc-cchHHHHHHHHhcCCCCCChhHHhhhCccccccccccchhhHHHHHHHhCCC-----
Q 010056          174 VRKSTFTEFLRRYPQVLHSSVV-VDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVS-----  247 (519)
Q Consensus       174 ls~~~i~~ll~~~P~iL~~s~~-~~l~p~v~fL~~lG~s~~~I~~il~~~P~lL~~s~e~~l~p~v~fL~~lGv~-----  247 (519)
                      ++++++++++.++|++|..+.+ .++.|+++||+++|++.++|++++.++|++|+++++++ ++++++|+++|++     
T Consensus        98 ~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~-~~~v~~L~~lgv~~g~~~  176 (343)
T 3mva_O           98 TSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSLGHND  176 (343)
T ss_dssp             SCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHH-HHHHHHHHHHHHHTTCSC
T ss_pred             CCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHh-hHHHHHHHHhCCCcCCCc
Confidence            9999999999999996555544 48999999999999999999999999999999999876 9999999988764     


Q ss_pred             -hhHHHHHHhhCccccccccccchhhHHHHHH-HhCCChHHHHHHHHhC-CcccccccccchhhhHHHHHhhhcCCccHH
Q 010056          248 -RREIGGVLTRYPDILGMRVGRVIKPFVEYLE-SLGIPRLAVARLIEKK-PYILGFGLEERVKPNVESLLEFSVRKEALP  324 (519)
Q Consensus       248 -~~~I~~ll~~~P~lL~~s~e~~l~p~v~~L~-~lG~~~~~i~~iI~~~-P~iL~~s~e~~l~~~v~~L~~lGv~~~~l~  324 (519)
                       ...|.++++++|.+++++ +++++++++||+ ++|++.+++.+++.+. |.+++++.+ ++++++.++.+         
T Consensus       177 p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~-~l~~~~~~l~e---------  245 (343)
T 3mva_O          177 PADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSND-YARRSYANIKE---------  245 (343)
T ss_dssp             HHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTT-HHHHHHHHHHH---------
T ss_pred             HHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHH-HHHHHHHHHHH---------
Confidence             678999999999999999 779999999999 5999999999999885 588888865 78888777653         


Q ss_pred             HHHhhCCcccccCcchhhhhHHHhhhhhcCCChhhHHHHHHhhhhhhhcChhHHHHhHHHHHHhCCcHHHHHHHHHhcCc
Q 010056          325 VVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQ  404 (519)
Q Consensus       325 ~vI~~~P~iL~~s~~~kl~~~~~~L~~~lG~s~~~~~~~v~k~P~iL~~s~~~l~~kv~fL~~lG~s~e~I~~mv~r~P~  404 (519)
                                             ++ ..+||+.+++..|+.++|+++.+|.++++.|++||.++|++.++|    .++|+
T Consensus       246 -----------------------~~-~~lG~s~~ev~~~v~~~P~il~~s~~~l~~k~~fl~~mg~~~~~i----~~~P~  297 (343)
T 3mva_O          246 -----------------------KL-FSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQI----IENPR  297 (343)
T ss_dssp             -----------------------HH-HTTTCCHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHTTTCCHHHH----HHSGG
T ss_pred             -----------------------HH-HHcCCCHHHHHHHHHhCCchhcccHHHHHHHHHHHHHcCCCHHHH----HhCCH
Confidence                                   12 478999999999999999999999999999999999999999998    79999


Q ss_pred             hhccCHHHHHHHHHHHHHHhCCChhhHhhcCcccccCccccchHHHHHH
Q 010056          405 VLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMI  453 (519)
Q Consensus       405 lL~~S~e~Lk~k~~fL~~~mg~~~~~i~~~P~~L~ySLekRI~PR~~~L  453 (519)
                      +|+||.|+|++|++||.. .|+.+..  .+..+|++| |++...|+..|
T Consensus       298 ~l~~sleri~~R~~~L~~-~g~~~~~--~~~~~l~~s-~~~F~~~~~~~  342 (343)
T 3mva_O          298 VLDSSISTLKSRIKELVN-AGCNLST--LNITLLSWS-KKRYEAKLKKL  342 (343)
T ss_dssp             GGGSCHHHHHHHHHHHHT-TTCCSSS--SCGGGGGSC-HHHHHHHHHHT
T ss_pred             HHhcCHHHHHHHHHHHHH-CCCCCCC--CcchhhcCC-HHHHHHHHhcc
Confidence            999999999999999876 7876542  223788887 55777776543

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=296.44  Aligned_cols=207  Identities=23%  Similarity=0.371  Sum_probs=176.3

Q ss_pred             chhhHHHHHHHhCCChhHHHHHHhhCccccccccccchhhHHHHHHHhCCChHHHHHHHHhCCcccccccccchhhhHHH
Q 010056          233 TMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVES  312 (519)
Q Consensus       233 ~l~p~v~fL~~lGv~~~~I~~ll~~~P~lL~~s~e~~l~p~v~~L~~lG~~~~~i~~iI~~~P~iL~~s~e~~l~~~v~~  312 (519)
                      .+...+..|+++|+++.+|+++++.+|.++..    ++.+++.||..+|++.++|.++|.++|++|+++++ +++++++|
T Consensus        45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f  119 (335)
T 4fp9_B           45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY  119 (335)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred             cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence            35667788888888888899999999988743    56788888888999999999999999999998886 78888888


Q ss_pred             HHhhhcCCccHHHHHhhCCcccccCcchhhhhHHHhhhhhcCCChhhHHHHHHhhhhhhhcChhHHHHhHHHHHH-hCCc
Q 010056          313 LLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLKS-CGFF  391 (519)
Q Consensus       313 L~~lGv~~~~l~~vI~~~P~iL~~s~~~kl~~~~~~L~~~lG~s~~~~~~~v~k~P~iL~~s~~~l~~kv~fL~~-lG~s  391 (519)
                      |+++|++.+++..++                                     .++|++++++.++++.++.+|.. +||+
T Consensus       120 L~~lGl~~~~i~~ll-------------------------------------~~~P~lL~~s~e~i~~~v~~L~~~lGfS  162 (335)
T 4fp9_B          120 LQKLGLGEGKLKRVL-------------------------------------YCCPEIFTMRQQDINDTVRLLKEKCLFT  162 (335)
T ss_dssp             HHHTTCTTTTHHHHH-------------------------------------HHCGGGGTSCHHHHHHHHHHHHHTSCCC
T ss_pred             HHHcCCCHHHHHHHH-------------------------------------HhCchhhccChHHHHHHHHHHHHHcCCC
Confidence            877777766655544                                     44555555566667788888875 9999


Q ss_pred             HHHHHHHHHhcCchhccCHHHHHHHHHHHHHHhCCChhhHhhcCcccccCccccchHHHHHHHHcCC-------------
Q 010056          392 LQQVRQIVVECPQVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGL-------------  458 (519)
Q Consensus       392 ~e~I~~mv~r~P~lL~~S~e~Lk~k~~fL~~~mg~~~~~i~~~P~~L~ySLekRI~PR~~~L~~kGl-------------  458 (519)
                      .++|..||.++|++|++|.++|++|++||+++||+++++|++ |.+|+||++ ||+|||.||+..|.             
T Consensus       163 ~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~  240 (335)
T 4fp9_B          163 VQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIP  240 (335)
T ss_dssp             HHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSC
T ss_pred             HHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCC
Confidence            999999999999999999999999999999999999999997 999999999 99999999999998             


Q ss_pred             CCCcchhhccChHHHHHHHhhcccc
Q 010056          459 QCSLSWLLNCSDEKFKERMNYDTID  483 (519)
Q Consensus       459 ~~sl~~~l~~sd~~F~~r~v~~~~~  483 (519)
                      +++|.+++.+||+.||+++++.+.+
T Consensus       241 npsL~~il~~sd~~F~~~vA~~s~e  265 (335)
T 4fp9_B          241 NPLLKDILRVSEAEFLARTACTSVE  265 (335)
T ss_dssp             CCCHHHHTTSCHHHHHHHTSCCCHH
T ss_pred             CccHHHHHcCCHHHHHHHHHhcCHH
Confidence            3578999999999999999865443

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=1.8e-34  Score=288.33  Aligned_cols=217  Identities=20%  Similarity=0.313  Sum_probs=201.5

Q ss_pred             HHHHHHHhhCCCChhHHHHHHhhcCcccccccccchHHHHHHHHhcCCCCCChhHHhhhCccccccccccchhhHHHHHH
Q 010056          163 IPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLV  242 (519)
Q Consensus       163 ~p~l~~L~~lGls~~~i~~ll~~~P~iL~~s~~~~l~p~v~fL~~lG~s~~~I~~il~~~P~lL~~s~e~~l~p~v~fL~  242 (519)
                      .++++||.++|++.++|.+....+|.+|+.+++.++.|+++||+++|++.++|++++.++|.+|++++++ ++|+++||+
T Consensus         6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~   84 (270)
T 3m66_A            6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH   84 (270)
T ss_dssp             HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence            5899999999999999988888888889999999999999999999999999999999999999999998 999999999


Q ss_pred             HhCCChhHHHHHHhhCccccccccccchhhHHHHH-HHhCCChHHHHHHHHhCCcccccccccchhhhHHHHHhhhcCCc
Q 010056          243 GIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYL-ESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRKE  321 (519)
Q Consensus       243 ~lGv~~~~I~~ll~~~P~lL~~s~e~~l~p~v~~L-~~lG~~~~~i~~iI~~~P~iL~~s~e~~l~~~v~~L~~lGv~~~  321 (519)
                      ++|++.++|++++.++|++|+++++ +++|+++|| .++|++.+++.+++.++|.+++++.+ ++++++++         
T Consensus        85 ~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~~~v~~---------  153 (270)
T 3m66_A           85 SKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVKENMKV---------  153 (270)
T ss_dssp             HTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHHHHHHH---------
T ss_pred             HcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHHHHHHH---------
Confidence            9999999999999999999999999 599999999 58999999999999999999999976 45544443         


Q ss_pred             cHHHHHhhCCcccccCcchhhhhHHHhhhhhcCCChhhHHHHHHhhhhhhhcChhHHHHhHHHHHH-hCCcHHHHHHHHH
Q 010056          322 ALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLKS-CGFFLQQVRQIVV  400 (519)
Q Consensus       322 ~l~~vI~~~P~iL~~s~~~kl~~~~~~L~~~lG~s~~~~~~~v~k~P~iL~~s~~~l~~kv~fL~~-lG~s~e~I~~mv~  400 (519)
                                                 +...+||+.+++.+++.++|+++++|.++++.+++||.+ +|++.++|    .
T Consensus       154 ---------------------------l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i----~  202 (270)
T 3m66_A          154 ---------------------------YRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHII----V  202 (270)
T ss_dssp             ---------------------------HHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHH----H
T ss_pred             ---------------------------HHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHH----H
Confidence                                       335788889999999999999999999999999999987 99999987    7


Q ss_pred             hcCchhccCHHHHHHHHHHHHH
Q 010056          401 ECPQVLALNLDIMKLSFDYFQR  422 (519)
Q Consensus       401 r~P~lL~~S~e~Lk~k~~fL~~  422 (519)
                      ++|++|+||.++|+||+.|+..
T Consensus       203 ~~P~~l~~Sleri~pR~~~l~~  224 (270)
T 3m66_A          203 KFPQVFNTRLFKVKERHLFLTY  224 (270)
T ss_dssp             HCGGGGGSCHHHHHHHHHHHHH
T ss_pred             hCchHhhCCHHHHHHHHHHHHH
Confidence            9999999999999999999976

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=99.94  E-value=2.4e-26  Score=234.97  Aligned_cols=182  Identities=16%  Similarity=0.254  Sum_probs=162.9

Q ss_pred             chHHHHHHHHhcCCCCCChhHHhhhCccccccccccchhhHHHHHHHhCCChhHHHHHHhhCccccccccccchhhHHHH
Q 010056          197 DLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEY  276 (519)
Q Consensus       197 ~l~p~v~fL~~lG~s~~~I~~il~~~P~lL~~s~e~~l~p~v~fL~~lGv~~~~I~~ll~~~P~lL~~s~e~~l~p~v~~  276 (519)
                      ++...+.+|.++|+++++|++++.++|.++..    ++.+++.||..+|++.++|+++|.++|++|+++++ +|+++++|
T Consensus        45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f  119 (335)
T 4fp9_B           45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY  119 (335)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred             cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence            46778889999999999999999999998754    46788999999999999999999999999999997 69999999


Q ss_pred             HHHhCCChHHHHHHHHhCCcccccccccchhhhHHHHHhhhcCCccHHHHHhhCCcccccCcchhhhhHHHhhhhhcCCC
Q 010056          277 LESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSS  356 (519)
Q Consensus       277 L~~lG~~~~~i~~iI~~~P~iL~~s~e~~l~~~v~~L~~lGv~~~~l~~vI~~~P~iL~~s~~~kl~~~~~~L~~~lG~s  356 (519)
                      |+++|++.+++++++.++|++|+++.+ ++..++.+|                                    ...+||+
T Consensus       120 L~~lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L------------------------------------~~~lGfS  162 (335)
T 4fp9_B          120 LQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLL------------------------------------KEKCLFT  162 (335)
T ss_dssp             HHHTTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHH------------------------------------HHTSCCC
T ss_pred             HHHcCCCHHHHHHHHHhCchhhccChH-HHHHHHHHH------------------------------------HHHcCCC
Confidence            999999999999999999999999876 555554443                                    3578889


Q ss_pred             hhhHHHHHHhhhhhhhcChhHHHHhHHHHHH-hCCcHHHHHHHHHhcCchhccCHHHHHHHHHHHHHHhCC
Q 010056          357 SKDFGSIVEKMPQVVNASNSAVTRHVDFLKS-CGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQREMQR  426 (519)
Q Consensus       357 ~~~~~~~v~k~P~iL~~s~~~l~~kv~fL~~-lG~s~e~I~~mv~r~P~lL~~S~e~Lk~k~~fL~~~mg~  426 (519)
                      .+++.+||.++|++|.+|.++++.|++||.+ ||++.++|    ++ |++|+||+++|++|..||.. +|+
T Consensus       163 ~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~~eI----vk-P~~l~ySLeRIkpRH~fL~~-lG~  227 (335)
T 4fp9_B          163 VQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDI----VK-SEYLQYSLTKIKQRHIYLER-LGR  227 (335)
T ss_dssp             HHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCHHHH----HH-TTGGGSCHHHHHHHHHHHHH-HTS
T ss_pred             HHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCHHHc----cc-cchhhccHHHHHHHHHHHHH-cCC
Confidence            9999999999999999999999999999998 99999998    34 99999999999999999987 776

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.21  E-value=2e-10  Score=101.17  Aligned_cols=164  Identities=24%  Similarity=0.422  Sum_probs=120.2

Q ss_pred             hhcCCccHHHHHhhCCcccccCcchhhhhHHHhhhhhcCCChhhHHHHHHhhhhhhhcChhHHHHhHHHHHH-hCCcHHH
Q 010056          316 FSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLKS-CGFFLQQ  394 (519)
Q Consensus       316 lGv~~~~l~~vI~~~P~iL~~s~~~kl~~~~~~L~~~lG~s~~~~~~~v~k~P~iL~~s~~~l~~kv~fL~~-lG~s~e~  394 (519)
                      +|+.++-+..++.+.|+++.+.+-. ++.+..++ ..+|+++....+++..+|.++......+.+.+..|++ +-|+.++
T Consensus        43 lglnpepvcvvlkkspqllklpimq-mrkrssyl-qklglgegklkrvlyccpeiftmrqqdindtvrllkekclftvqq  120 (239)
T 4fzv_B           43 LGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSYL-QKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLKEKCLFTVQQ  120 (239)
T ss_dssp             HCCCTTHHHHHHHSCGGGGTSCHHH-HHHHHHHH-HHHTTCSSCCHHHHHHCGGGGTSCHHHHHHHHHHHHHHSCCCHHH
T ss_pred             hcCCCCceEEEecCCHHHhcChHHH-HHHHHHHH-HHhCCCccchhhheecCcHHHHHHHhhHhHHHHHHHHhHHhhHHH
Confidence            3444444444444444444443321 11122222 3444444455555556666666666677888889997 8899999


Q ss_pred             HHHHHHhcCchhccCHHHHHHHHHHHHHHhCCChhhHhhcCcccccCccccchHHHHHHHHcCC-------------CCC
Q 010056          395 VRQIVVECPQVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGL-------------QCS  461 (519)
Q Consensus       395 I~~mv~r~P~lL~~S~e~Lk~k~~fL~~~mg~~~~~i~~~P~~L~ySLekRI~PR~~~L~~kGl-------------~~s  461 (519)
                      +.+++..||.+|.-++..+.-|+.|-.-.||+..-+|++. .||.|||. +|+.||-+|...|.             ++-
T Consensus       121 vtkilhscpsvlredlgqleykfqyayfrmgikhpdivks-eylqyslt-kikqrhiylerlgryqtpdkkgqtqipnpl  198 (239)
T 4fzv_B          121 VTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVKS-EYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPL  198 (239)
T ss_dssp             HHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHHHT-TGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSCCCC
T ss_pred             HHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchhHH-HHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCCChH
Confidence            9999999999999999999999999888899999999985 89999998 79999999998775             234


Q ss_pred             cchhhccChHHHHHHHhhcccc
Q 010056          462 LSWLLNCSDEKFKERMNYDTID  483 (519)
Q Consensus       462 l~~~l~~sd~~F~~r~v~~~~~  483 (519)
                      +..++..|+..|.+|-..+..+
T Consensus       199 lkdilrvseaeflartactsve  220 (239)
T 4fzv_B          199 LKDILRVSEAEFLARTACTSVE  220 (239)
T ss_dssp             HHHHHTSCHHHHHHHTSCSCHH
T ss_pred             HHHHHHHhHHHHHHHHhcccHH
Confidence            6789999999999987766554

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=98.70  E-value=1.4e-07  Score=83.14  Aligned_cols=148  Identities=19%  Similarity=0.351  Sum_probs=130.6

Q ss_pred             hHHHHHHHhhCCCChhHHHHHHhhcCcccccccccchHHHHHHHHhcCCCCCChhHHhhhCccccccccccchhhHHHHH
Q 010056          162 MIPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYL  241 (519)
Q Consensus       162 l~p~l~~L~~lGls~~~i~~ll~~~P~iL~~s~~~~l~p~v~fL~~lG~s~~~I~~il~~~P~lL~~s~e~~l~p~v~fL  241 (519)
                      +..++.-+.-+|+.++-+.-++.+.|++|..... +++.+-.||+.+|+....+.+++-.+|.|++++.. .+...|..|
T Consensus        33 lldiisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrqq-dindtvrll  110 (239)
T 4fzv_B           33 LLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLL  110 (239)
T ss_dssp             TTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHH-HHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHHh-hHhHHHHHH
Confidence            5566777778999999999999999999999876 78899999999999999999999999999998864 688899999


Q ss_pred             HH-hCCChhHHHHHHhhCccccccccccchhhHHHHHH-HhCCChHHHHHHHHhCCcccccccccchhhhHHHHHhhhc
Q 010056          242 VG-IGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLE-SLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSV  318 (519)
Q Consensus       242 ~~-lGv~~~~I~~ll~~~P~lL~~s~e~~l~p~v~~L~-~lG~~~~~i~~iI~~~P~iL~~s~e~~l~~~v~~L~~lGv  318 (519)
                      ++ +-++..++.+++..+|.++.-++. .++-+++|.. .+|+...+|.+     ...|.+++. +++.+.-+|..+|-
T Consensus       111 kekclftvqqvtkilhscpsvlredlg-qleykfqyayfrmgikhpdivk-----seylqyslt-kikqrhiylerlgr  182 (239)
T 4fzv_B          111 KEKCLFTVQQVTKILHSCPSVLREDLG-QLEYKFQYAYFRMGIKHPDIVK-----SEYLQYSLT-KIKQRHIYLERLGR  182 (239)
T ss_dssp             HHHSCCCHHHHHHHHHHCGGGGTSCTT-HHHHHHHHHHHTSCCCHHHHHH-----TTGGGSCHH-HHHHHHHHHHHHTC
T ss_pred             HHhHHhhHHHHHHHHHhCcHHHHHHHh-hhhhhHhHHHHHccCCCcchhH-----HHHHHHHHH-HHHHHHhHHHHhcc
Confidence            96 578999999999999999999888 7999998886 89999888754     456788887 89999999998874

>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}

Probab=88.24  E-value=3.3  Score=41.81  Aligned_cols=39  Identities=18%  Similarity=0.327  Sum_probs=24.5

Q ss_pred             HHhCCCCccccCCccCCCChHHHHHHHHHHHhCCCCcccc
Q 010056          108 LQGIGIVPDELDGLELPVTVEVMRERVDFLHNLGLTIEDI  147 (519)
Q Consensus       108 L~~~Gi~~~~l~~l~~p~~~d~v~~~l~~L~~lGls~~~i  147 (519)
                      |..+|.+.+.+.++. |.....+...=+-|..+||++++|
T Consensus         8 l~~lgys~~q~~k~k-~~~~s~va~~h~~l~~~g~t~~~i   46 (463)
T 4hpz_A            8 LRTLGYSQQQQEKIK-PKVRSTVAQHHEALVGHGFTHAHI   46 (463)
T ss_dssp             GGGGTCCHHHHHHHC-GGGHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHhccCHHHHHHhh-HHHHHHHHHHHHHHHhcCCCHHHH
Confidence            455777766665552 333344445556777888888887

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=87.72  E-value=0.71  Score=47.20  Aligned_cols=35  Identities=20%  Similarity=0.219  Sum_probs=19.4

Q ss_pred             HHHHHHHhCCCCccccccCCcccccccccchHHHHHHHh
Q 010056          132 ERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLG  170 (519)
Q Consensus       132 ~~l~~L~~lGls~~~i~~~P~lL~~s~~~~l~p~l~~L~  170 (519)
                      ..|..|.++||+++++.+-   |.... ++....++||-
T Consensus       170 ~~i~~l~~MGf~~~~~~~A---L~a~~-nn~~~A~e~L~  204 (368)
T 1oqy_A          170 TMLTEIMSMGYERERVVAA---LRASY-NNPHRAVEYLL  204 (368)
T ss_dssp             HHHHHHHTTTCCSHHHHHH---HHHSC-SSTTHHHHTTT
T ss_pred             HHHHHHHHcCCCHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence            4467777777777666432   22222 24666667764

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=80.11  E-value=4  Score=29.68  Aligned_cols=24  Identities=13%  Similarity=0.230  Sum_probs=16.8

Q ss_pred             hHHHHHHHhhCCCChhHHHHHHhh
Q 010056          162 MIPVLDYLGKLGVRKSTFTEFLRR  185 (519)
Q Consensus       162 l~p~l~~L~~lGls~~~i~~ll~~  185 (519)
                      +..+++||++-|++.++|...+.+
T Consensus        30 ~~~K~~FL~sKGLt~~EI~~Al~r   53 (54)
T 3ff5_A           30 LATRRAFLKKKGLTDEEIDLAFQQ   53 (54)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHc
Confidence            556777777777777777766654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00