Citrus Sinensis ID: 010063

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------52
Protein Sequence
MAASFLAVPSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYKI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHcHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccccccccccccccHHHHcccEEEHHHHHHcccccEEEEEEHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHcc
Coil and Loop (DISEMBL)
maasflavpspsfcnhrksqvglclpsgiwqngrthfpiCLQMQKCKVKLYMIPCKAIVRFWALKRfasvgslevdtedqkhhlssgfsapndfarsktlhdhssnlwDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILElnrgtesadlvlplfslgslfikegkavdaESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIkdsnymsldDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITekykgkehpsFVTHLLNLAASYSRSKNFVEAERLLRICLDImtktvgpddqsisfpmlhLGITLYHLNRDKEAEKLVLEALYIREIafgkdslpvgkLFCFVLFGLVWFCLLLYKI
Flexible Loop (DISEMBL)
maasflavpspsfcnHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILelnrgtesADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEkykgkehpSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYKI
Low Complexity Region (SEG)
MAASFLAVPSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVgrgqegrelleecllITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYKI
Disordered region (IsUnstruct)
************FCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLE*******************************NLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLY**
Disordered Region (DISOPRED)
*****************************WQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYKI
Disordered Region (DISEMBL)
********PSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGS*************SGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYKI
Disordered Region (DISPRO)
*AASFLAVPSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYKI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAASFLAVPSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMxxxxxxxxxxxxxxxxxxxxxINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTxxxxxxxxxxxxxxxxxxxxxYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	519	2.2.26 [Sep-21-2011]
A0JM23	1311	Nephrocystin-3 OS=Xenopus	yes	no	0.477	0.189	0.240	2e-13
Q6AZT7	1300	Nephrocystin-3 OS=Xenopus	N/A	no	0.477	0.190	0.240	5e-13
Q7Z494	1330	Nephrocystin-3 OS=Homo sa	yes	no	0.504	0.196	0.225	6e-11
P0CI65	1303	Nephrocystin-3 OS=Danio r	yes	no	0.551	0.219	0.231	7e-11
Q7TNH6	1325	Nephrocystin-3 OS=Mus mus	yes	no	0.514	0.201	0.224	8e-11
P46822	540	Kinesin light chain OS=Ca	yes	no	0.462	0.444	0.252	1e-08
Q07866	573	Kinesin light chain 1 OS=	no	no	0.429	0.389	0.252	4e-08
Q5R581	560	Kinesin light chain 1 OS=	yes	no	0.429	0.398	0.252	5e-08
P37285	560	Kinesin light chain 1 OS=	no	no	0.429	0.398	0.247	1e-07
Q2HJJ0	616	Kinesin light chain 4 OS=	no	no	0.495	0.417	0.238	1e-07

>sp|A0JM23|NPHP3_XENTR Nephrocystin-3 OS=Xenopus tropicalis GN=nphp3 PE=2 SV=2

 Score = 78.2 bits (191), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 118/274 (43%), Gaps = 26/274 (9%)

Query: 245  VTSLLGMAKVLG----SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE 300
            +TSL  + + LG     +G   +AV    R + I E     +   +   L  L  ++++ 
Sbjct: 923  MTSLADLYETLGRFLKDLGLLSQAVTPLQRSLEIRETALDPDHPSVAQSLHQLAGVYVQS 982

Query: 301  GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360
             K  +AE ++ + L+I    YG    RV   + +LA         E+A +L KK+L++ +
Sbjct: 983  KKFGNAEQLYKQALEISENAYGSEHMRVARELDALAVLYQKQNKFEQAEQLRKKSLKIRQ 1042

Query: 361  DS--------------------NYMSLDDSIMENMRI--DLAELLHIVGRGQEGRELLEE 398
             S                      ++L     +N R   +L  L ++    +     L+ 
Sbjct: 1043 KSARRKGSMYGFALLRRRALQLEELTLGKDTSDNARTLNELGVLYYLQNNLETAETFLKR 1102

Query: 399  CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 458
             L + E+  G +HP     + NLAA Y+  K + +AE L    LDI  + + PD  S+++
Sbjct: 1103 SLEMRERVLGADHPDCAQSINNLAALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAY 1162

Query: 459  PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 492
             + HL +      +  +A  L   A+ IR+ +FG
Sbjct: 1163 TVKHLAVLYKRKGKLDKAVPLYELAVEIRQKSFG 1196

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.
Xenopus tropicalis (taxid: 8364)

>sp|Q6AZT7|NPHP3_XENLA Nephrocystin-3 OS=Xenopus laevis GN=nphp3 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 118/274 (43%), Gaps = 26/274 (9%)

Query: 245  VTSLLGMAKVLG----SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE 300
            +TSL  + + LG     +G   +AV    R + I E     +   +   L  L  ++++ 
Sbjct: 912  MTSLADLYETLGRFLKDLGLLSQAVTPLQRSLEIRETALDPDHPSVAQSLHQLAGVYMQS 971

Query: 301  GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360
             K  +AE ++ + L+I    YG    RV   + +LA         E+A +L KK+L++ +
Sbjct: 972  KKFGNAEQLYKQALEISENAYGSEHLRVARELDALAVLYQKQNKFEQAEQLRKKSLKIRQ 1031

Query: 361  DS--------------------NYMSLDDSIMENMRI--DLAELLHIVGRGQEGRELLEE 398
             S                      ++L     +N R   +L  L ++    +     L+ 
Sbjct: 1032 KSARRKGSMYGFALLRRRALQLEELTLGKDTSDNARTLNELGVLYYLQNNLETAETFLKR 1091

Query: 399  CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 458
             L + E+  G +HP     + NLAA Y+  K + +AE L    LDI  + + PD  S+++
Sbjct: 1092 SLEMRERVLGADHPDCAQSINNLAALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAY 1151

Query: 459  PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 492
             + HL +      +  +A  L   A+ IR+ +FG
Sbjct: 1152 TVKHLAVLYKRKGKLDKAVPLYELAVDIRQKSFG 1185

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Xenopus laevis (taxid: 8355)

>sp|Q7Z494|NPHP3_HUMAN Nephrocystin-3 OS=Homo sapiens GN=NPHP3 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 124/293 (42%), Gaps = 31/293 (10%)

Query: 209  MGSMYSTLENY-------EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA 261
            +  +Y TL  +        ++++  QR + + E+        +  SL  +A V     + 
Sbjct: 942  LADLYETLGRFLKDLGLLSQAIVPLQRSLEIRETALDPDHPRVAQSLHQLASVYVQWKKF 1001

Query: 262  KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321
              A ++Y + + I E   G +       L +L +L+ K+ K   AE    +  KI+ K  
Sbjct: 1002 GNAEQLYKQALEISENAYGADHPYTARELEALATLYQKQNKYEQAEHFRKKSFKIHQKAI 1061

Query: 322  GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI--DL 379
             +     G A+                  L ++AL++ +    ++L     +N R   +L
Sbjct: 1062 KKKGNLYGFAL------------------LRRRALQLEE----LTLGKDTPDNARTLNEL 1099

Query: 380  AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439
              L ++    +   + L+  L + E+  G +HP     L NLAA  +  K + +AE L  
Sbjct: 1100 GVLYYLQNNLETADQFLKRSLEMRERVLGPDHPDCAQSLNNLAALCNEKKQYDKAEELYE 1159

Query: 440  ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 492
              LDI  + + PD  S+++ + HL I    + +  +A  L   A+ IR+ +FG
Sbjct: 1160 RALDIRRRALAPDHPSLAYTVKHLAILYKKMGKLDKAVPLYELAVEIRQKSFG 1212

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling which regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Homo sapiens (taxid: 9606)

>sp|P0CI65|NPHP3_DANRE Nephrocystin-3 OS=Danio rerio GN=nphp3 PE=3 SV=1

 Score = 69.3 bits (168), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 132/315 (41%), Gaps = 29/315 (9%)

Query: 187  MMSGIVDSLKDDEPLLDA--ILLHMGSMYSTLENY-------EKSMLVYQRVINVLESRY 237
            M +   D+LK+ E   ++   +  + ++Y TL  +        +++   QR + + E+  
Sbjct: 896  MATEYFDALKEFEKTCESEQSMSRLANLYETLGRFLKDLGLLSQAVAPLQRSLEIRETAL 955

Query: 238  GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF 297
                  +  SL  +A V     +   A ++Y + + I E   G E + +   L SL  L+
Sbjct: 956  DPDHPSVAQSLHQLAGVYVHWRKFGNAEQLYKQAMEICENAYGPEHSTVARELDSLSLLY 1015

Query: 298  IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357
             K+ K   AE +  R +KI  K   +     G A+                  L ++AL+
Sbjct: 1016 QKQNKYEQAEKLRKRSVKIRQKTARQKGHMYGFAL------------------LKRRALQ 1057

Query: 358  VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH 417
            +  +   +  D +       +L  L ++       +  L   L + ++  G +HP     
Sbjct: 1058 L--EELTLGKDSTDCAKTLNELGVLYYLQNNLDAAKLFLTRSLEMRQRVLGPDHPDCAQS 1115

Query: 418  LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 477
            L NLAA +S  K +  AE L    LDI  + + PD  S+++ + HL +      + ++A 
Sbjct: 1116 LNNLAALHSERKEYESAEELYERALDIRKRALAPDHPSLAYTLKHLAMLYKRRGKLEKAV 1175

Query: 478  KLVLEALYIREIAFG 492
             L   AL IRE +FG
Sbjct: 1176 PLYELALEIREKSFG 1190

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Danio rerio (taxid: 7955)

>sp|Q7TNH6|NPHP3_MOUSE Nephrocystin-3 OS=Mus musculus GN=Nphp3 PE=1 SV=2

 Score = 68.9 bits (167), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 119/290 (41%), Gaps = 23/290 (7%)

Query: 226  YQRVINVLESRYGKTSILLVTSLL-GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA 284
            Y   +   E+  G+ ++L +  L   + + L  +G   +AV    R + I E     +  
Sbjct: 918  YFESLKQYENSEGEENMLCLADLYETLGRFLKDLGLLSQAVVPLQRSLEIRETALDPDHP 977

Query: 285  DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN 344
             +   L  L  ++++  K  DAE ++ + L+I    YG +       + +LA        
Sbjct: 978  RVAQSLHQLAGVYVQWKKFGDAEQLYKQALEISENAYGADHPHAARELEALATLYHKQNK 1037

Query: 345  AEEAVELYKKALRVIKDSNY--------------------MSLDDSIMENMRI--DLAEL 382
             E+A    KK++ + + +                      ++L     EN R   +L  L
Sbjct: 1038 YEQAEHFRKKSVIIRQQATRRKGSLYGFALLRRRALQLEELTLGKDKPENARTLNELGVL 1097

Query: 383  LHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 442
              +    +   + L+  L + E+  G +HP     L NLAA  +  K + +AE L    L
Sbjct: 1098 YFLQNNLETAEQFLKRSLEMRERVLGPDHPDCAQSLNNLAALCNEKKQYEKAEELYERAL 1157

Query: 443  DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 492
            DI  + + PD  S+++ + HL I      +  +A  L   A+ IR+ +FG
Sbjct: 1158 DIRRRALAPDHPSLAYTVKHLAILYKKTGKVDKAVPLYELAVEIRQKSFG 1207

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Mus musculus (taxid: 10090)

>sp|P46822|KLC_CAEEL Kinesin light chain OS=Caenorhabditis elegans GN=klc-2 PE=2 SV=2

 Score = 61.6 bits (148), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 103/246 (41%), Gaps = 6/246 (2%)

Query: 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 257
           D P +  +L  +  +Y     Y+++  +    +++ E   G++   +  +L  +A + G 
Sbjct: 243 DHPDVATMLNILALVYRDQNKYKEAANLLNEALSIREKCLGESHPAVAATLNNLAVLFGK 302

Query: 258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317
            G+ K A  +  R + I E   G +  D+   L +L  L   +GK  + E  + R L+IY
Sbjct: 303 RGKFKDAEPLCKRALEIREKVLGDDHPDVAKQLNNLALLCQNQGKYEEVEKYYKRALEIY 362

Query: 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 377
               G +D  V     +L+ A    G  +EA ELYK+ L    +  +  +     EN  I
Sbjct: 363 ESKLGPDDPNVAKTKNNLSSAYLKQGKYKEAEELYKQILTRAHEREFGQISG---ENKPI 419

Query: 378 -DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER 436
             +AE         EG    E+      K    + P+  T L NL A Y R   +  AE 
Sbjct: 420 WQIAEEREENKHKGEGATANEQAGWA--KAAKVDSPTVTTTLKNLGALYRRQGKYEAAET 477

Query: 437 LLRICL 442
           L  + L
Sbjct: 478 LEDVAL 483

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Caenorhabditis elegans (taxid: 6239)

>sp|Q07866|KLC1_HUMAN Kinesin light chain 1 OS=Homo sapiens GN=KLC1 PE=1 SV=2

 Score = 60.1 bits (144), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 98/242 (40%), Gaps = 19/242 (7%)

Query: 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 257
           D P +  +L  +  +Y     Y+ +  +    + + E   GK    +  +L  +A + G 
Sbjct: 250 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 309

Query: 258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317
            G+ K+A  +  R + I E   G +  D+   L +L  L   +GK  + E  + R L+IY
Sbjct: 310 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 369

Query: 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 377
               G +D  V     +LA      G  ++A  LYK+ L    +  + S+DD   EN  I
Sbjct: 370 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD---ENKPI 426

Query: 378 --DLAELLHIVGRGQEGRELLEECLLITEKYKG------KEHPSFVTHLLNLAASYSRSK 429
                E     G+ ++G    E        Y G       + P+  T L NL A Y R  
Sbjct: 427 WMHAEEREECKGKQKDGTSFGE--------YGGWYKACKVDSPTVTTTLKNLGALYRRQG 478

Query: 430 NF 431
            F
Sbjct: 479 KF 480

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Homo sapiens (taxid: 9606)

>sp|Q5R581|KLC1_PONAB Kinesin light chain 1 OS=Pongo abelii GN=KLC1 PE=2 SV=3

 Score = 59.7 bits (143), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 98/242 (40%), Gaps = 19/242 (7%)

Query: 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 257
           D P +  +L  +  +Y     Y+ +  +    + + E   GK    +  +L  +A + G 
Sbjct: 250 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 309

Query: 258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317
            G+ K+A  +  R + I E   G +  D+   L +L  L   +GK  + E  + R L+IY
Sbjct: 310 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 369

Query: 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 377
               G +D  V     +LA      G  ++A  LYK+ L    +  + S+DD   EN  I
Sbjct: 370 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD---ENKPI 426

Query: 378 --DLAELLHIVGRGQEGRELLEECLLITEKYKG------KEHPSFVTHLLNLAASYSRSK 429
                E     G+ ++G    E        Y G       + P+  T L NL A Y R  
Sbjct: 427 WMHAEEREECKGKQKDGTSFGE--------YGGWYKACKVDSPTVTTTLKNLGALYRRQG 478

Query: 430 NF 431
            F
Sbjct: 479 KF 480

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Pongo abelii (taxid: 9601)

>sp|P37285|KLC1_RAT Kinesin light chain 1 OS=Rattus norvegicus GN=Klc1 PE=1 SV=2

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 98/242 (40%), Gaps = 19/242 (7%)

Query: 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 257
           D P +  +L  +  +Y     Y+ +  +    + + E   G+    +  +L  +A + G 
Sbjct: 250 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGRDHPAVAATLNNLAVLYGK 309

Query: 258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317
            G+ K+A  +  R + I E   G +  D+   L +L  L   +GK  + E  + R L+IY
Sbjct: 310 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 369

Query: 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 377
               G +D  V     +LA      G  ++A  LYK+ L    +  + S+DD   EN  I
Sbjct: 370 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD---ENKPI 426

Query: 378 --DLAELLHIVGRGQEGRELLEECLLITEKYKG------KEHPSFVTHLLNLAASYSRSK 429
                E     G+ ++G    E        Y G       + P+  T L NL A Y R  
Sbjct: 427 WMHAEEREECKGKQKDGSSFGE--------YGGWYKACKVDSPTVTTTLKNLGALYRRQG 478

Query: 430 NF 431
            F
Sbjct: 479 KF 480

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Rattus norvegicus (taxid: 10116)

>sp|Q2HJJ0|KLC4_BOVIN Kinesin light chain 4 OS=Bos taurus GN=KLC4 PE=2 SV=2

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 109/272 (40%), Gaps = 15/272 (5%)

Query: 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG 259
           P++  +L  +  +Y     Y+++ L+    +++ ES  G+    +  +L  +A + G  G
Sbjct: 247 PVVATMLNILALVYRGQNKYKEAALLLNDALSIRESTLGRDHPAVAATLNNLAVLYGKRG 306

Query: 260 RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319
           + K+A  +  R + I E   GT   D+   L +L  L   +GK    E  + R L IY  
Sbjct: 307 KYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYRRALAIYEG 366

Query: 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS-----IMEN 374
             G ++  V     +LA      G   EA  LYK+ L       + S+DD      +   
Sbjct: 367 QLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRAHVQEFGSVDDDHKPIWMHAE 426

Query: 375 MRIDLAELLHIVGRGQ--EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV 432
            R +++++ H  G     E     + C + +        P+  T L NL A Y R     
Sbjct: 427 EREEMSKIRHREGSTPYAEYGGWYKACKVSS--------PTVNTTLRNLGALYRRQGKLE 478

Query: 433 EAERLLRICLDIMTKTVGPDDQSISFPMLHLG 464
            AE L    L    +   P  Q+    +L  G
Sbjct: 479 AAETLEECALRSRKQGTDPISQTKVAELLGEG 510

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	519
224135115	579	predicted protein [Populus trichocarpa]	0.969	0.868	0.666	0.0
225455344	573	PREDICTED: nephrocystin-3-like [Vitis vi	0.930	0.842	0.663	0.0
302143919	559	unnamed protein product [Vitis vinifera]	0.903	0.838	0.685	0.0
255561868	505	kinesin light chain, putative [Ricinus c	0.820	0.843	0.674	1e-165
356509235	577	PREDICTED: nephrocystin-3-like [Glycine	0.928	0.835	0.592	1e-164
297792665	562	hypothetical protein ARALYDRAFT_495375 [	0.905	0.836	0.574	1e-158
357463995	580	Kinesin light chain [Medicago truncatula	0.969	0.867	0.595	1e-158
449497357	561	PREDICTED: nephrocystin-3-like [Cucumis	0.932	0.862	0.571	1e-156
18423468	564	kinesin light chain-related protein [Ara	0.870	0.801	0.594	1e-155
8809597	498	unnamed protein product [Arabidopsis tha	0.868	0.905	0.592	1e-155

>gi|224135115|ref|XP_002321987.1| predicted protein [Populus trichocarpa] gi|222868983|gb|EEF06114.1| predicted protein [Populus trichocarpa]

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/506 (66%), Positives = 401/506 (79%), Gaps = 3/506 (0%)

Query: 1   MAASFLAVPSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVR 60
           MA S L    P   N R +Q  + L S   Q G T F ICLQ QKC ++LYMIP   + R
Sbjct: 1   MAVSLLH--HPPLSNQRITQAFVDLNSRSLQRGITCFSICLQKQKCSIELYMIPTTTVAR 58

Query: 61  FWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLE 120
            W LK FAS GSL  + E Q++ +SSGFS  NDF RSKT+ D SS   DG+ DFERQL E
Sbjct: 59  HWMLKTFASAGSLNAEVECQENQISSGFSTSNDFGRSKTVADSSSKPSDGVKDFERQLQE 118

Query: 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKF 180
           LF+EVK MI MGNKNDA+DLLQANYE VKEQINAG++GIEE A LDIIALGY+ IGDLK 
Sbjct: 119 LFDEVKMMIKMGNKNDAMDLLQANYEFVKEQINAGSRGIEEAATLDIIALGYMAIGDLKS 178

Query: 181 VQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT 240
           V  +L+ +  +V+ L DDEPLLD++L+HMGSMYS L  +EKSMLVYQRVI +LE  +GK 
Sbjct: 179 VGFILNKLDEVVERLTDDEPLLDSVLIHMGSMYSALGKFEKSMLVYQRVIAILERIHGKG 238

Query: 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE 300
           S  LV+ LLGMAK+LGSIG+A KA+E+Y RVI+ILE +RG ES DLV+PL  LG+L IKE
Sbjct: 239 SAFLVSPLLGMAKILGSIGKATKAIEVYQRVISILESSRGAESKDLVVPLSGLGNLLIKE 298

Query: 301 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360
           G+A DAES+F+RIL IY + YGE DGR GMA+CS+AH KCA GNAEEA+ LY+KAL+VIK
Sbjct: 299 GRATDAESLFNRILSIYKESYGEYDGRFGMALCSVAHVKCATGNAEEAINLYRKALQVIK 358

Query: 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 420
           D++YM++DDSIME MRIDLAELLH+VGRG EGRELLEECLLITEKYKGK+HPS VTHL+N
Sbjct: 359 DADYMAVDDSIMERMRIDLAELLHVVGRGNEGRELLEECLLITEKYKGKDHPSSVTHLIN 418

Query: 421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 480
           LA SYS+SKN+V+AERLLR  L+IM K+V PDD SI+FPMLHL +TLY LN+D+EAE+L 
Sbjct: 419 LATSYSQSKNYVQAERLLRTSLEIMMKSVRPDDSSITFPMLHLAVTLYRLNQDEEAEQLT 478

Query: 481 LEALYIREIAFGKDSLPVGK-LFCFV 505
           LE L+IRE AFGKDSLPVG+ L C V
Sbjct: 479 LEVLHIREKAFGKDSLPVGEALDCLV 504

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455344|ref|XP_002272297.1| PREDICTED: nephrocystin-3-like [Vitis vinifera]

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/494 (66%), Positives = 385/494 (77%), Gaps = 11/494 (2%)

Query: 23  LCLPSGIWQNGRTH----------FPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGS 72
           L LPS      R H          F +CL+ QKC +KLYMIP   IV    L+ FA++GS
Sbjct: 5   LLLPSQRISQMRMHSEDLTKDVMCFSLCLKRQKCNIKLYMIPASTIVHHGVLRPFATIGS 64

Query: 73  LEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMG 132
              D  +Q +H+S G  APN F RS+TL   SS+     NDFERQL ELFN VK+MI MG
Sbjct: 65  SGADGINQGNHVSLGVFAPNKFQRSRTLLHSSSSPSGDENDFERQLQELFNAVKTMIKMG 124

Query: 133 NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192
           NK DAIDLLQANYEAVKEQI+ G KG+E+ AILDII LGY+ +GDLK V+SLLDMM  IV
Sbjct: 125 NKKDAIDLLQANYEAVKEQIDVGAKGMEQAAILDIIVLGYMLVGDLKLVRSLLDMMDKIV 184

Query: 193 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA 252
           D LKDDE LLD++LLHMGS+YSTL  +EKSML+Y+R + +LE  YGK S  L+T LLGMA
Sbjct: 185 DGLKDDEALLDSVLLHMGSVYSTLGKFEKSMLMYRRALEILEMTYGKDSAFLITPLLGMA 244

Query: 253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR 312
           K LGSIGR  KAVEIYH+ I ILEL+RG ES DLV+PL  LG+L IKE KA DAE  F+R
Sbjct: 245 KALGSIGRVTKAVEIYHQAIAILELSRGAESEDLVVPLLGLGNLLIKERKATDAEIPFTR 304

Query: 313 ILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM 372
           IL IY + YGENDGRVG+AMCSLAH KCA G+A+EA++LY+ AL+++K S YM+LDD+IM
Sbjct: 305 ILNIYKRSYGENDGRVGIAMCSLAHVKCAKGDADEAIQLYRNALQIVKVSKYMALDDNIM 364

Query: 373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV 432
           E MRIDLAELLH+VGRG+EGRELLEECLLITEKYKG++HPS VTHL+NLA SYSRSKNFV
Sbjct: 365 EKMRIDLAELLHVVGRGKEGRELLEECLLITEKYKGEDHPSSVTHLINLATSYSRSKNFV 424

Query: 433 EAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 492
           EAERLLR  L IM KT+GPDDQSI+FPMLHL +TLYHL RD+EAE+L L+AL IRE AFG
Sbjct: 425 EAERLLRTSLRIMMKTMGPDDQSITFPMLHLAVTLYHLKRDEEAEQLTLKALQIREAAFG 484

Query: 493 KDSLPVGK-LFCFV 505
           K+SLPVG+ L C V
Sbjct: 485 KESLPVGEALDCLV 498

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143919|emb|CBI23024.3| unnamed protein product [Vitis vinifera]

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/470 (68%), Positives = 379/470 (80%), Gaps = 1/470 (0%)

Query: 37  FPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFAR 96
           F +CL+ QKC +KLYMIP   IV    L+ FA++GS   D  +Q +H+S G  APN F R
Sbjct: 15  FSLCLKRQKCNIKLYMIPASTIVHHGVLRPFATIGSSGADGINQGNHVSLGVFAPNKFQR 74

Query: 97  SKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGN 156
           S+TL   SS+     NDFERQL ELFN VK+MI MGNK DAIDLLQANYEAVKEQI+ G 
Sbjct: 75  SRTLLHSSSSPSGDENDFERQLQELFNAVKTMIKMGNKKDAIDLLQANYEAVKEQIDVGA 134

Query: 157 KGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTL 216
           KG+E+ AILDII LGY+ +GDLK V+SLLDMM  IVD LKDDE LLD++LLHMGS+YSTL
Sbjct: 135 KGMEQAAILDIIVLGYMLVGDLKLVRSLLDMMDKIVDGLKDDEALLDSVLLHMGSVYSTL 194

Query: 217 ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276
             +EKSML+Y+R + +LE  YGK S  L+T LLGMAK LGSIGR  KAVEIYH+ I ILE
Sbjct: 195 GKFEKSMLMYRRALEILEMTYGKDSAFLITPLLGMAKALGSIGRVTKAVEIYHQAIAILE 254

Query: 277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA 336
           L+RG ES DLV+PL  LG+L IKE KA DAE  F+RIL IY + YGENDGRVG+AMCSLA
Sbjct: 255 LSRGAESEDLVVPLLGLGNLLIKERKATDAEIPFTRILNIYKRSYGENDGRVGIAMCSLA 314

Query: 337 HAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL 396
           H KCA G+A+EA++LY+ AL+++K S YM+LDD+IME MRIDLAELLH+VGRG+EGRELL
Sbjct: 315 HVKCAKGDADEAIQLYRNALQIVKVSKYMALDDNIMEKMRIDLAELLHVVGRGKEGRELL 374

Query: 397 EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI 456
           EECLLITEKYKG++HPS VTHL+NLA SYSRSKNFVEAERLLR  L IM KT+GPDDQSI
Sbjct: 375 EECLLITEKYKGEDHPSSVTHLINLATSYSRSKNFVEAERLLRTSLRIMMKTMGPDDQSI 434

Query: 457 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGK-LFCFV 505
           +FPMLHL +TLYHL RD+EAE+L L+AL IRE AFGK+SLPVG+ L C V
Sbjct: 435 TFPMLHLAVTLYHLKRDEEAEQLTLKALQIREAAFGKESLPVGEALDCLV 484

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561868|ref|XP_002521943.1| kinesin light chain, putative [Ricinus communis] gi|223538868|gb|EEF40467.1| kinesin light chain, putative [Ricinus communis]

 Score =  589 bits (1519), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 288/427 (67%), Positives = 351/427 (82%), Gaps = 1/427 (0%)

Query: 80  QKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAID 139
           Q+   SSG S  + F RS+ L D  SN  +G+NDF RQL ELF+EVK+MI+MGN +DA+D
Sbjct: 4   QEDVASSGSSNESAFLRSRPLLDDPSNPSNGVNDFARQLQELFDEVKAMILMGNSSDAMD 63

Query: 140 LLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199
           LLQANYE VKE I+AG +GIEE A+LDIIALGY+ IGDL  V S+L++++ ++ +LKDD 
Sbjct: 64  LLQANYEIVKELIDAGARGIEEAAMLDIIALGYMAIGDLGTVGSILNLLNMVIKNLKDDG 123

Query: 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG 259
           PLLD++L+HMGSMYS L  +EKSM+ YQRVI+VLES+YG++SI +V  LLGM KVLGSIG
Sbjct: 124 PLLDSVLMHMGSMYSALGKFEKSMIAYQRVISVLESKYGESSIFIVPPLLGMGKVLGSIG 183

Query: 260 RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319
           R  KA E+Y RVI ILE  RG ES +LV+PLF LG+L +KEG+  DAE  F RIL IY K
Sbjct: 184 RVNKATEVYQRVIIILESGRGAESKELVVPLFGLGNLLMKEGRTTDAEIHFIRILNIYRK 243

Query: 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL 379
           +YGENDGR GMA+CS+A+ KC+ GN EEA++LY+KAL VIKDSNYM+ DD++ME MRIDL
Sbjct: 244 LYGENDGRYGMALCSVANLKCSTGNVEEAIDLYRKALEVIKDSNYMAKDDTVMEKMRIDL 303

Query: 380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439
           AELLH+VGRG+EGRELLEECLLITE+YKGKEHPS V HLLNLA SYS+SKNFVEAERLLR
Sbjct: 304 AELLHVVGRGKEGRELLEECLLITEEYKGKEHPSSVAHLLNLATSYSQSKNFVEAERLLR 363

Query: 440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVG 499
           I L+IM KTV P+DQS++FPML L +TLY+LNRD+EAE+L +E L IRE AFGKDSLPVG
Sbjct: 364 ISLEIMMKTVSPEDQSVTFPMLQLAMTLYNLNRDEEAEQLAVEVLRIREKAFGKDSLPVG 423

Query: 500 K-LFCFV 505
           + L C V
Sbjct: 424 EALDCLV 430

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509235|ref|XP_003523356.1| PREDICTED: nephrocystin-3-like [Glycine max]

 Score =  585 bits (1509), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 300/506 (59%), Positives = 374/506 (73%), Gaps = 24/506 (4%)

Query: 1   MAASFLAVPSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVR 60
           + +SF  + +     H    + LC    I     T F +C Q QK   KLY+IP + +  
Sbjct: 20  LTSSFTGIRTSKELRH---MLSLCELKSI-----TCFSVCNQKQKYNQKLYIIPVRTVCV 71

Query: 61  FWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLE 120
            + + R +SVGS+E+          SGFSAPND+ R              ++  E++L E
Sbjct: 72  RFCISR-SSVGSVELSGTGTHSDAYSGFSAPNDYQR--------------IDSLEKELEE 116

Query: 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKF 180
           LF+EVK MI MGNKNDAIDLL ANYE VKE++NAG KGIEE A LDIIALGY+ +GDLKF
Sbjct: 117 LFDEVKRMISMGNKNDAIDLLTANYEVVKERLNAGTKGIEEAATLDIIALGYMAVGDLKF 176

Query: 181 VQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT 240
           V SLL+MM  +VD+LKDD P LD+IL+HMGSMY+TL  +EKS+ VYQR + ++E  YG  
Sbjct: 177 VGSLLNMMKEVVDNLKDDAPRLDSILMHMGSMYATLSKFEKSLDVYQRAVYIMERTYGMD 236

Query: 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE 300
           S  LVT  LGMAKVLGSIG+A KA+E Y RVIT+LE +RGT+S DLV+PL SL +L +KE
Sbjct: 237 STFLVTPCLGMAKVLGSIGKATKAIETYQRVITLLESSRGTKSKDLVVPLLSLANLLLKE 296

Query: 301 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360
           G+A DAE+ F+R+L IYT++YG+NDG++GMAM SLA  KCA G ++EA++L+K+A++V+K
Sbjct: 297 GRANDAETHFTRVLNIYTELYGQNDGKIGMAMSSLARVKCAQGKSDEAIQLFKRAIQVMK 356

Query: 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 420
           DSNY+S DD+IME MR+DLAELLH VGRGQEGRELLEECL ITE+YKGKEHPS VTH++N
Sbjct: 357 DSNYLSPDDNIMEKMRVDLAELLHTVGRGQEGRELLEECLWITERYKGKEHPSLVTHMIN 416

Query: 421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 480
           LA SYSRSKN+ +AE LLR  L IM K  G DDQSISFPMLHL +TLYHL +D+EAEKL 
Sbjct: 417 LATSYSRSKNYADAEHLLRRSLQIMIKQKGTDDQSISFPMLHLAVTLYHLKKDEEAEKLA 476

Query: 481 LEALYIREIAFGKDSLPVGK-LFCFV 505
           LE L IRE AFGK+SLPVG+ L C V
Sbjct: 477 LEVLRIREKAFGKNSLPVGEALDCLV 502

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792665|ref|XP_002864217.1| hypothetical protein ARALYDRAFT_495375 [Arabidopsis lyrata subsp. lyrata] gi|297310052|gb|EFH40476.1| hypothetical protein ARALYDRAFT_495375 [Arabidopsis lyrata subsp. lyrata]

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 284/494 (57%), Positives = 366/494 (74%), Gaps = 24/494 (4%)

Query: 13  FCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGS 72
           + N   SQ G       WQ G     +C + QK K KLY+IP     R + L    SV S
Sbjct: 17  WANQLSSQSGSAPRDSTWQYG-----VCFRNQKRKTKLYLIPA----RHFLLTPIDSVTS 67

Query: 73  LEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMG 132
               +E    H +SG S       S  +H+        M +FE +L ELFNEVK+M+ +G
Sbjct: 68  ----SESASVHATSGVSEVQRSTSSNNVHE--------MEEFEMELQELFNEVKAMVKIG 115

Query: 133 NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192
            + DA+DLL+ANY AVKE++++G KGIE+ A+LDIIALGY+ +GDLK + +LLDM++ IV
Sbjct: 116 KERDAVDLLRANYVAVKEEMDSGLKGIEQAAVLDIIALGYMAVGDLKPIPALLDMINKIV 175

Query: 193 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA 252
           D+LKD EPLLD++L+H+GSMYS +  +E S+L +QR + +LE+RYGK + LLVT LLG+A
Sbjct: 176 DNLKDSEPLLDSVLMHVGSMYSAIGKFENSILTHQRAVRILENRYGKGNTLLVTPLLGLA 235

Query: 253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR 312
           K+  S G+A KA+ +Y R +TILE NRG++S DLV+PLFSLG L +KEGKA +AE  F+R
Sbjct: 236 KIFASDGKATKAIGVYERTVTILERNRGSQSEDLVMPLFSLGKLLLKEGKAAEAEIHFTR 295

Query: 313 ILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM 372
           I+ IY K+YGE DGRVGMAMCSLA+AKC+ G+A EAV++YK ALR+IKDS  M++D+SI+
Sbjct: 296 IVNIYKKIYGEKDGRVGMAMCSLANAKCSKGDANEAVDIYKNALRIIKDS--MAIDNSIL 353

Query: 373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV 432
           ENMR DLAELLH VGRG EGRELLEECLLI E++KGK HPS  THL+NLAASYSRSKN+V
Sbjct: 354 ENMRTDLAELLHFVGRGDEGRELLEECLLINERFKGKNHPSMATHLINLAASYSRSKNYV 413

Query: 433 EAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 492
           EAERLLR CL+IM ++VG +DQSI+FPML+L +TL  LNRD+EAE++ L+ L IRE AF 
Sbjct: 414 EAERLLRTCLNIMEESVGSEDQSITFPMLNLAVTLSQLNRDEEAEQVALKVLRIREKAFA 473

Query: 493 KDSLPVGK-LFCFV 505
           KDSLPVG+ L C V
Sbjct: 474 KDSLPVGEALDCLV 487

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463995|ref|XP_003602279.1| Kinesin light chain [Medicago truncatula] gi|355491327|gb|AES72530.1| Kinesin light chain [Medicago truncatula]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 302/507 (59%), Positives = 368/507 (72%), Gaps = 4/507 (0%)

Query: 1   MAASFLAVPSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVR 60
           M AS   VPSPSF   R S+    + S         F +C Q Q    KLY+IP + I R
Sbjct: 1   MEASSCFVPSPSFIGFRTSKDRPHVLSLQEFKRIISFSVCNQKQNYNEKLYIIPIRTISR 60

Query: 61  FWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLH-DHSSNLWDGMNDFERQLL 119
           F   + FA   SLE+     +     G+SAP++  R  TL  D +S+ +   ++F+++L 
Sbjct: 61  FCISRSFAK--SLELGGTGPQSDALLGYSAPDEDNRRFTLSLDSASSAFHRFSNFDKELE 118

Query: 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLK 179
           ELF EVK MI MG K+DAIDLL ANYE VKE++NAG KGIEE AILDI+ALGY+ +GDLK
Sbjct: 119 ELFGEVKKMIKMGKKSDAIDLLNANYEMVKERLNAGTKGIEEAAILDILALGYMAVGDLK 178

Query: 180 FVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK 239
            V  LL+ +  +VD+LKDD P LD+I++HMG+MY+TL  +E+S+  YQR + ++E  YGK
Sbjct: 179 SVGYLLNSLKEVVDTLKDDAPHLDSIVMHMGNMYATLNKFEESLNTYQRAVYIVERIYGK 238

Query: 240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK 299
            S +LVT  LGMAK LGSIG+A KAVEIY  VIT+LE NRG ES DLV+PL SLG+L +K
Sbjct: 239 DSTILVTPHLGMAKALGSIGKATKAVEIYQHVITLLESNRGAESKDLVVPLLSLGNLLLK 298

Query: 300 EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359
           EG+A DAES FSR+L IYTKVYGENDGR+GMAM SLA  KCA G  +EA+ L+K+AL+V+
Sbjct: 299 EGRANDAESRFSRVLNIYTKVYGENDGRIGMAMSSLAQVKCALGKTDEAIHLFKRALKVM 358

Query: 360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL 419
           KDSNYMS D+SIME MR+DLAELLH  GRGQ+GRE+LEECLLITE+YKGKEHPS  TH++
Sbjct: 359 KDSNYMSPDNSIMEKMRVDLAELLHTSGRGQKGREILEECLLITERYKGKEHPSLATHMI 418

Query: 420 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL 479
           NLA SY+RSKN+ EAE LLR  L IM K  G DDQSISFPML L  TLYHL  D+EAEKL
Sbjct: 419 NLATSYTRSKNYAEAEHLLRRSLQIMIKHNGTDDQSISFPMLQLAATLYHLKNDEEAEKL 478

Query: 480 VLEALYIREIAFGKDSLPVGK-LFCFV 505
            LE L IRE AFG  SLPVG+ L C V
Sbjct: 479 ALEVLRIREKAFGDYSLPVGEALDCLV 505

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497357|ref|XP_004160380.1| PREDICTED: nephrocystin-3-like [Cucumis sativus]

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 288/504 (57%), Positives = 373/504 (74%), Gaps = 20/504 (3%)

Query: 3   ASFLAVPSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFW 62
           A+FL + SPS+ +       +C  + I     T   +CLQ  KC +KLY +P  A   F 
Sbjct: 2   ATFLLLSSPSYSH------CICKRASI-----TCSSVCLQ--KCNIKLYAVPVGA---FS 45

Query: 63  ALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELF 122
            L       S       ++ H+SS F+ P  + RS   H H     + + +FE QL EL 
Sbjct: 46  CLSASTPSASSRAAFGAERKHVSSAFT-PIGYQRSD--HMHYRTDCNTVAEFEVQLEELL 102

Query: 123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQ 182
           NEV+++ M G K+DA++LLQANYEAVKEQ+ +G  GIE+ A+LDI+ALGY+ +GDLKFV 
Sbjct: 103 NEVRTLTMSGRKSDAVELLQANYEAVKEQMESGAVGIEQAAVLDIVALGYLTVGDLKFVA 162

Query: 183 SLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI 242
           S+LD+++ +VDSL D EP LD++LLHMGSMYSTL+ +EKS+ VY+R I+++E ++G+ S 
Sbjct: 163 SVLDILNKVVDSLTDGEPFLDSVLLHMGSMYSTLKKFEKSISVYKRAIDIMEKKFGEDSS 222

Query: 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK 302
            L+T +LGMAKVLG+IGRA KAVE Y+R I++LE +RG E+ DLV+PL SLG+L +KEGK
Sbjct: 223 FLITPILGMAKVLGTIGRAGKAVECYNRAISLLESSRGFENEDLVIPLISLGNLMLKEGK 282

Query: 303 AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362
             DAE+ F+RI+ IY K+YGE +G+VGMAM SLA+AKCA G A+EAV L ++AL +IKDS
Sbjct: 283 GKDAETCFARIVNIYEKLYGEKNGKVGMAMYSLANAKCARGEADEAVTLCRRALEIIKDS 342

Query: 363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA 422
           N ++LDDS +E MRIDLAELLH++GR  EGRELLEECLLI E+ KGKEHPS V HL+NLA
Sbjct: 343 NDIALDDSTIEKMRIDLAELLHVLGRANEGRELLEECLLINERLKGKEHPSSVKHLVNLA 402

Query: 423 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 482
           ASYSRSKN+VEAERLLRI LDIM K VG DDQSI+ PML+L +TLY+L +D +AE+L LE
Sbjct: 403 ASYSRSKNYVEAERLLRIGLDIMIKAVGSDDQSITVPMLNLAVTLYNLKQDNDAEQLALE 462

Query: 483 ALYIREIAFGKDSLPVGK-LFCFV 505
            L IRE AFGKDSLPVG+ L C V
Sbjct: 463 VLRIRENAFGKDSLPVGEALDCLV 486

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18423468|ref|NP_568784.1| kinesin light chain-related protein [Arabidopsis thaliana] gi|53828571|gb|AAU94395.1| At5g53080 [Arabidopsis thaliana] gi|332008918|gb|AED96301.1| kinesin light chain-related protein [Arabidopsis thaliana]

 Score =  556 bits (1432), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 278/468 (59%), Positives = 359/468 (76%), Gaps = 16/468 (3%)

Query: 39  ICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSK 98
           +CL+ QK K KLY+IP +  +            S  +D+       +S ++       S+
Sbjct: 37  VCLRNQKRKPKLYLIPARHFL------------STPIDSVSSSSITASRYATS---GVSE 81

Query: 99  TLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKG 158
                SSN    M +FE +L ELFNEVKSM+ +G ++DA+DLL+ANY AVKE++++G KG
Sbjct: 82  VQRSTSSNNVTEMEEFEMELQELFNEVKSMVKIGKESDAMDLLRANYVAVKEELDSGLKG 141

Query: 159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN 218
           IE+ A+LDIIALGY+ +GDLK V +LLDM++ IVD+LKD EPLLD++L+H+GSMYS +  
Sbjct: 142 IEQAAVLDIIALGYMAVGDLKPVPALLDMINKIVDNLKDSEPLLDSVLMHVGSMYSVIGK 201

Query: 219 YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278
           +E ++LV+QR I +LE+RYGK + LLVT LLGMAK   S G+A KA+ +Y R +TILE N
Sbjct: 202 FENAILVHQRAIRILENRYGKCNTLLVTPLLGMAKSFASDGKATKAIGVYERTLTILERN 261

Query: 279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA 338
           RG+ES DLV+PLFSLG L +KEGKA +AE  F+ I+ IY K+YGE DGRVGMAMCSLA+A
Sbjct: 262 RGSESEDLVVPLFSLGKLLLKEGKAAEAEIPFTSIVNIYKKIYGERDGRVGMAMCSLANA 321

Query: 339 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 398
           KC+ G+A EAV++Y+ ALR+IKDSNYM++D+SI+ENMRIDLAELLH VGRG EGRELLEE
Sbjct: 322 KCSKGDANEAVDIYRNALRIIKDSNYMTIDNSILENMRIDLAELLHFVGRGDEGRELLEE 381

Query: 399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 458
           CLLI E++KGK HPS  THL+NLAASYSRSKN+VEAERLLR CL+IM  +VG + QSI+F
Sbjct: 382 CLLINERFKGKNHPSMATHLINLAASYSRSKNYVEAERLLRTCLNIMEVSVGSEGQSITF 441

Query: 459 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGK-LFCFV 505
           PML+L +TL  LNRD+EAE++ L+ L IRE AFG+DSLPVG+ L C V
Sbjct: 442 PMLNLAVTLSQLNRDEEAEQIALKVLRIREKAFGEDSLPVGEALDCLV 489

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8809597|dbj|BAA97148.1| unnamed protein product [Arabidopsis thaliana]

 Score =  556 bits (1432), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 276/466 (59%), Positives = 357/466 (76%), Gaps = 15/466 (3%)

Query: 39  ICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSK 98
           +CL+ QK K KLY+IP +  +            S  +D+       +S ++       S+
Sbjct: 37  VCLRNQKRKPKLYLIPARHFL------------STPIDSVSSSSITASRYATS---GVSE 81

Query: 99  TLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKG 158
                SSN    M +FE +L ELFNEVKSM+ +G ++DA+DLL+ANY AVKE++++G KG
Sbjct: 82  VQRSTSSNNVTEMEEFEMELQELFNEVKSMVKIGKESDAMDLLRANYVAVKEELDSGLKG 141

Query: 159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN 218
           IE+ A+LDIIALGY+ +GDLK V +LLDM++ IVD+LKD EPLLD++L+H+GSMYS +  
Sbjct: 142 IEQAAVLDIIALGYMAVGDLKPVPALLDMINKIVDNLKDSEPLLDSVLMHVGSMYSVIGK 201

Query: 219 YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278
           +E ++LV+QR I +LE+RYGK + LLVT LLGMAK   S G+A KA+ +Y R +TILE N
Sbjct: 202 FENAILVHQRAIRILENRYGKCNTLLVTPLLGMAKSFASDGKATKAIGVYERTLTILERN 261

Query: 279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA 338
           RG+ES DLV+PLFSLG L +KEGKA +AE  F+ I+ IY K+YGE DGRVGMAMCSLA+A
Sbjct: 262 RGSESEDLVVPLFSLGKLLLKEGKAAEAEIPFTSIVNIYKKIYGERDGRVGMAMCSLANA 321

Query: 339 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 398
           KC+ G+A EAV++Y+ ALR+IKDSNYM++D+SI+ENMRIDLAELLH VGRG EGRELLEE
Sbjct: 322 KCSKGDANEAVDIYRNALRIIKDSNYMTIDNSILENMRIDLAELLHFVGRGDEGRELLEE 381

Query: 399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 458
           CLLI E++KGK HPS  THL+NLAASYSRSKN+VEAERLLR CL+IM  +VG + QSI+F
Sbjct: 382 CLLINERFKGKNHPSMATHLINLAASYSRSKNYVEAERLLRTCLNIMEVSVGSEGQSITF 441

Query: 459 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCF 504
           PML+L +TL  LNRD+EAE++ L+ L IRE AFG+DSLPVG +  F
Sbjct: 442 PMLNLAVTLSQLNRDEEAEQIALKVLRIREKAFGEDSLPVGIITLF 487

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	519
TAIR|locus:2168387	564	AT5G53080 [Arabidopsis thalian	0.870	0.801	0.572	4.8e-133
UNIPROTKB|Q5LU72	374	SPO1186 "TPR domain protein" [	0.547	0.759	0.272	1.7e-15
TIGR_CMR|SPO_1186	374	SPO_1186 "TPR domain protein"	0.547	0.759	0.272	1.7e-15
ASPGD|ASPL0000018313	1288	AN3547 [Emericella nidulans (t	0.564	0.227	0.263	9.9e-14
UNIPROTKB|F1NZ11	497	KLC1 "Uncharacterized protein"	0.670	0.700	0.221	1.2e-09
UNIPROTKB|F1SNS5	293	F1SNS5 "Uncharacterized protei	0.396	0.703	0.230	1.8e-09
UNIPROTKB|A0JM23	1311	nphp3 "Nephrocystin-3" [Xenopu	0.396	0.157	0.220	6.3e-09
UNIPROTKB|E1BSU8	1316	NPHP3 "Uncharacterized protein	0.396	0.156	0.225	6.3e-09
UNIPROTKB|Q6AZT7	1300	nphp3 "Nephrocystin-3" [Xenopu	0.396	0.158	0.225	1e-08
MGI|MGI:1921275	1325	Nphp3 "nephronophthisis 3 (ado	0.396	0.155	0.244	2.2e-08

TAIR|locus:2168387 AT5G53080 [Arabidopsis thaliana (taxid:3702)]

 Score = 1304 (464.1 bits), Expect = 4.8e-133, P = 4.8e-133
 Identities = 268/468 (57%), Positives = 350/468 (74%)

Query:    39 ICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSK 98
             +CL+ QK K KLY+IP     R +      SV S  +       + +SG S   +  RS 
Sbjct:    37 VCLRNQKRKPKLYLIPA----RHFLSTPIDSVSSSSITAS---RYATSGVS---EVQRST 86

Query:    99 TLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKG 158
             +    S+N+ + M +FE +L ELFNEVKSM+ +G ++DA+DLL+ANY AVKE++++G KG
Sbjct:    87 S----SNNVTE-MEEFEMELQELFNEVKSMVKIGKESDAMDLLRANYVAVKEELDSGLKG 141

Query:   159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN 218
             IE+ A+LDIIALGY+ +GDLK V +LLDM++ IVD+LKD EPLLD++L+H+GSMYS +  
Sbjct:   142 IEQAAVLDIIALGYMAVGDLKPVPALLDMINKIVDNLKDSEPLLDSVLMHVGSMYSVIGK 201

Query:   219 YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278
             +E ++LV+QR I +LE+RYGK + LLVT LLGMAK   S G+A KA+ +Y R +TILE N
Sbjct:   202 FENAILVHQRAIRILENRYGKCNTLLVTPLLGMAKSFASDGKATKAIGVYERTLTILERN 261

Query:   279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA 338
             RG+ES DLV+PLFSLG L +KEGKA +AE  F+ I+ IY K+YGE DGRVGMAMCSLA+A
Sbjct:   262 RGSESEDLVVPLFSLGKLLLKEGKAAEAEIPFTSIVNIYKKIYGERDGRVGMAMCSLANA 321

Query:   339 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVXXXXXXXXXXXX 398
             KC+ G+A EAV++Y+ ALR+IKDSNYM++D+SI+ENMRIDLAELLH V            
Sbjct:   322 KCSKGDANEAVDIYRNALRIIKDSNYMTIDNSILENMRIDLAELLHFVGRGDEGRELLEE 381

Query:   399 XXXITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 458
                I E++KGK HPS  THL+NLAASYSRSKN+VEAERLLR CL+IM  +VG + QSI+F
Sbjct:   382 CLLINERFKGKNHPSMATHLINLAASYSRSKNYVEAERLLRTCLNIMEVSVGSEGQSITF 441

Query:   459 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGK-LFCFV 505
             PML+L +TL  LNRD+EAE++ L+ L IRE AFG+DSLPVG+ L C V
Sbjct:   442 PMLNLAVTLSQLNRDEEAEQIALKVLRIREKAFGEDSLPVGEALDCLV 489

GO:0009507 "chloroplast" evidence=ISM

GO:0042802 "identical protein binding" evidence=IEA

UNIPROTKB|Q5LU72 SPO1186 "TPR domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 220 (82.5 bits), Expect = 1.7e-15, P = 1.7e-15
 Identities = 78/286 (27%), Positives = 119/286 (41%)

Query:   207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVE 266
             L +   Y     + ++  +Y++V+     ++G       T L  +A+VL +  R  +A  
Sbjct:    69 LEVAGRYLAEARFTEAEAIYRQVLVSFPEKHGFNHPGYATRLNNLAEVLRATARYDEAES 128

Query:   267 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 326
             +Y + + I     G E  D  + L +L  L    G+   AE ++   + I  KV GE   
Sbjct:   129 LYRQALEIDREALGLEHPDYGIDLLNLAGLLHDRGRYEAAEPLYREAMTIIGKVVGEEHY 188

Query:   327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV 386
             R   A  +LA         EEA  L ++AL +   S  +    S+      +LAELL   
Sbjct:   189 RYATAQNNLAGLLQDMLRFEEAEALCRQALEIT--SKTLGESHSVYATRLNNLAELLGTT 246

Query:   387 XXXXXXXXXXXXXXXITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 446
                            IT+K  G+EHP F   L NLA     +  + EAE L R  L+I  
Sbjct:   247 ERYGEAEPLYRQALEITQKTLGEEHPDFAIRLNNLAVLLKATGRYEEAEPLYRQALEITH 306

Query:   447 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 492
             +T+G      +  + +    L    R  EAE L  +AL I E A G
Sbjct:   307 RTLGEAHPDYATRLNNFAGLLDSTERYDEAEPLYRQALEICEKALG 352

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_1186 SPO_1186 "TPR domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 220 (82.5 bits), Expect = 1.7e-15, P = 1.7e-15
 Identities = 78/286 (27%), Positives = 119/286 (41%)

Query:   207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVE 266
             L +   Y     + ++  +Y++V+     ++G       T L  +A+VL +  R  +A  
Sbjct:    69 LEVAGRYLAEARFTEAEAIYRQVLVSFPEKHGFNHPGYATRLNNLAEVLRATARYDEAES 128

Query:   267 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 326
             +Y + + I     G E  D  + L +L  L    G+   AE ++   + I  KV GE   
Sbjct:   129 LYRQALEIDREALGLEHPDYGIDLLNLAGLLHDRGRYEAAEPLYREAMTIIGKVVGEEHY 188

Query:   327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV 386
             R   A  +LA         EEA  L ++AL +   S  +    S+      +LAELL   
Sbjct:   189 RYATAQNNLAGLLQDMLRFEEAEALCRQALEIT--SKTLGESHSVYATRLNNLAELLGTT 246

Query:   387 XXXXXXXXXXXXXXXITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 446
                            IT+K  G+EHP F   L NLA     +  + EAE L R  L+I  
Sbjct:   247 ERYGEAEPLYRQALEITQKTLGEEHPDFAIRLNNLAVLLKATGRYEEAEPLYRQALEITH 306

Query:   447 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 492
             +T+G      +  + +    L    R  EAE L  +AL I E A G
Sbjct:   307 RTLGEAHPDYATRLNNFAGLLDSTERYDEAEPLYRQALEICEKALG 352

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000018313 AN3547 [Emericella nidulans (taxid:162425)]

 Score = 214 (80.4 bits), Expect = 9.9e-14, P = 9.9e-14
 Identities = 79/300 (26%), Positives = 133/300 (44%)

Query:   197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK--TSILLVTSLLGMAKV 254
             D    LD +  ++G++YS     +++  +YQR +   E   G   TS L   + LG+  +
Sbjct:   790 DHTSTLDTVN-NLGNLYSDQGKLKEAEKMYQRALAGKEKALGPDHTSTLDTVNNLGI--L 846

Query:   255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL 314
                 G+ K+A E+Y R +   E   G +    ++ + +LG+L+  +GK  +AE ++ + L
Sbjct:   847 YSDQGKLKEAEEMYQRALAGYEKALGPDHTSTLVTVNNLGNLYSDQGKLKEAEKMYQQAL 906

Query:   315 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN 374
             K Y K  G +       + +L       G  +EA E+Y++AL   K+        S ++ 
Sbjct:   907 KGYEKALGPDHTSTLDTVNNLGSLYKNQGKLKEAEEMYQQALAG-KEKALGPDHTSTLDT 965

Query:   375 MRIDLAELLHIVXXXXXXXXXXXXXXXITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA 434
             +  +L  L                     EK  G +H S +  + NL + YS      EA
Sbjct:   966 VN-NLGILYKNQGKLKEAEEMYQRALAGKEKALGPDHTSTLMTVNNLGSLYSDQGKLKEA 1024

Query:   435 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 494
             E++ +  L    K +GPD  S    + +LG       + KEAEK+  +AL   E A G D
Sbjct:  1025 EKMYQQALAGYEKALGPDHTSTLITVNNLGNLYSDQGKLKEAEKMYQQALAGYEKALGPD 1084

GO:0005871 "kinesin complex" evidence=IEA

GO:0009116 "nucleoside metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|F1NZ11 KLC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 171 (65.3 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 79/356 (22%), Positives = 135/356 (37%)

Query:   100 LHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI 159
             L D  +N    +   E+ + +L  E K +  M       D +  +  A  +Q   G +  
Sbjct:   120 LRDELANTQQKLQKSEQSVAQLEEEKKHLEFMNQLKKYDDDISPSVTAAAQQ--GGYEIP 177

Query:   160 EEVAILDIIALGYVYIGDLKFVQSLLDM-MSGIVDSLKDDEPLLDAILLHMGSMYSTLEN 218
               +  L  + + Y   G  +    L    +  +  +   D P +  +L  +  +Y     
Sbjct:   178 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK 237

Query:   219 YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278
             Y+ +  +    + + E   GK    +  +L  +A + G  G+ K+A  +  R + I E  
Sbjct:   238 YKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 297

Query:   279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA 338
              G +  D+   L +L  L   +GK  + E  + R L+IY    G +D  V     +LA  
Sbjct:   298 LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASC 357

Query:   339 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL-AELLHIVXXXXXXXXXXX 397
                 G  ++A  LYK+ L    +  + S+DD   EN  I + AE                
Sbjct:   358 YLKQGKFKQAETLYKEILTRAHEREFGSVDD---ENKPIWMHAEEREECKGKQKDGTSFG 414

Query:   398 XXXXITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD 453
                   +  K  + P+  T L NL A Y R   F  AE L    +    +  G D+
Sbjct:   415 EYGGWYKACK-VDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQATGLDN 469

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005871 "kinesin complex" evidence=IEA

UNIPROTKB|F1SNS5 F1SNS5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 164 (62.8 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 49/213 (23%), Positives = 100/213 (46%)

Query:   150 EQINAGNKGIEEVAILDIIALGYVYIGDLK----FVQSLLDMMSGIVDSLKDDEPLLDAI 205
             E++  G    +    L+ + + Y    +L+    F++  L+M   +   L  D P     
Sbjct:    25 EELTLGKDTPDNARTLNELGVLYYLQNNLETAEQFLKRSLEMRERV---LGPDHPDCAQS 81

Query:   206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
             L ++ ++ +  + Y+K+  +Y+R +++           L  ++  +A +   +G+  KAV
Sbjct:    82 LNNLAALCNEKKQYDKAEELYERALDIRRRALAPDHPSLAYTVKHLAILYKKMGKLDKAV 141

Query:   266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325
              +Y   + I + + G +   +   L +L  L+ +  K ++A  ++ R LKIY    G   
Sbjct:   142 PLYELAVEIRQKSFGPKHPSVATALVNLAVLYSQMKKHIEALPLYERALKIYEDSLGRMH 201

Query:   326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358
              RVG  + +LA      G+ E+A ELYK+A+ +
Sbjct:   202 PRVGETLKNLAVLSYEEGDFEKAAELYKRAMEI 234

GO:0005871 "kinesin complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|A0JM23 nphp3 "Nephrocystin-3" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 170 (64.9 bits), Expect = 6.3e-09, P = 6.3e-09
 Identities = 47/213 (22%), Positives = 101/213 (47%)

Query:   150 EQINAGNKGIEEVAILDIIALGYVYIGDLK----FVQSLLDMMSGIVDSLKDDEPLLDAI 205
             E++  G    +    L+ + + Y    +L+    F++  L+M   ++ +   D P     
Sbjct:  1065 EELTLGKDTSDNARTLNELGVLYYLQNNLETAETFLKRSLEMRERVLGA---DHPDCAQS 1121

Query:   206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
             + ++ ++Y+  + Y+K+  +Y+R +++           L  ++  +A +    G+  KAV
Sbjct:  1122 INNLAALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAYTVKHLAVLYKRKGKLDKAV 1181

Query:   266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325
              +Y   + I + + G +   +   L +L  L+ +  K  +A  ++ R +KIY    G   
Sbjct:  1182 PLYELAVEIRQKSFGPKHPSVATALVNLAVLYCQMKKQAEASPLYERAMKIYEDSLGRMH 1241

Query:   326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358
              RVG  + +LA  +   G+ E+A ELYK+A+ +
Sbjct:  1242 PRVGETLKNLAVLRYEEGDFEKAAELYKRAMEI 1274

GO:0005929 "cilium" evidence=ISS

GO:0060271 "cilium morphogenesis" evidence=ISS

GO:0072372 "primary cilium" evidence=ISS

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISS

GO:2000095 "regulation of Wnt receptor signaling pathway, planar cell polarity pathway" evidence=ISS

UNIPROTKB|E1BSU8 NPHP3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 170 (64.9 bits), Expect = 6.3e-09, P = 6.3e-09
 Identities = 48/213 (22%), Positives = 102/213 (47%)

Query:   150 EQINAGNKGIEEVAILDIIALGYVYIGDLK----FVQSLLDMMSGIVDSLKDDEPLLDAI 205
             E++  G    +    L+ + + Y    +L+    F++  L+M   +   L  + P     
Sbjct:  1067 EELTLGKDTPDNARTLNELGVLYYLQNNLETAELFLKRSLEMRERV---LGPNHPDCAQS 1123

Query:   206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
             L ++ ++Y+  ++Y+K+  +Y++ +++           L  ++  +A +   +G+  KAV
Sbjct:  1124 LNNLAALYNEKKHYDKAEELYEKALDIRRRALAPDHPSLAYTVKHLAVLYKKMGKLDKAV 1183

Query:   266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325
              +Y   + I + + G +   +   L +L  L+ +  K  +A  ++ R LKIY   +G   
Sbjct:  1184 PLYELAVEIRQKSFGPKHPSVATALVNLAVLYCQMKKQTEALPLYERALKIYEDSFGHMH 1243

Query:   326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358
              RVG  + +LA      G+ E+A ELYK+A+ +
Sbjct:  1244 PRVGETLKNLAVLSYEGGDFEKAAELYKRAMEI 1276

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0045494 "photoreceptor cell maintenance" evidence=IEA

GO:0048496 "maintenance of organ identity" evidence=IEA

GO:0060027 "convergent extension involved in gastrulation" evidence=IEA

GO:0060993 "kidney morphogenesis" evidence=IEA

GO:0072189 "ureter development" evidence=IEA

GO:0072372 "primary cilium" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

UNIPROTKB|Q6AZT7 nphp3 "Nephrocystin-3" [Xenopus laevis (taxid:8355)]

 Score = 168 (64.2 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 48/213 (22%), Positives = 101/213 (47%)

Query:   150 EQINAGNKGIEEVAILDIIALGYVYIGDLK----FVQSLLDMMSGIVDSLKDDEPLLDAI 205
             E++  G    +    L+ + + Y    +L+    F++  L+M   ++ +   D P     
Sbjct:  1054 EELTLGKDTSDNARTLNELGVLYYLQNNLETAETFLKRSLEMRERVLGA---DHPDCAQS 1110

Query:   206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
             + ++ ++Y+  + Y+K+  +Y+R +++           L  ++  +A +    G+  KAV
Sbjct:  1111 INNLAALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAYTVKHLAVLYKRKGKLDKAV 1170

Query:   266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325
              +Y   + I + + G +   +   L +L  L+ +  K  DA  ++ R +KIY    G   
Sbjct:  1171 PLYELAVDIRQKSFGPKHPSVATALVNLAVLYCQMKKQDDALPLYERAMKIYEDSLGRMH 1230

Query:   326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358
              RVG  + +LA  +   G+ E+A ELYK+A+ +
Sbjct:  1231 PRVGETLKNLAVLRYEEGDYEKAAELYKRAMEI 1263

GO:0005929 "cilium" evidence=ISS

GO:0060027 "convergent extension involved in gastrulation" evidence=IMP

GO:0060271 "cilium morphogenesis" evidence=ISS

GO:0072372 "primary cilium" evidence=ISS

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISS

GO:2000095 "regulation of Wnt receptor signaling pathway, planar cell polarity pathway" evidence=IMP

MGI|MGI:1921275 Nphp3 "nephronophthisis 3 (adolescent)" [Mus musculus (taxid:10090)]

 Score = 165 (63.1 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 52/213 (24%), Positives = 97/213 (45%)

Query:   150 EQINAGNKGIEEVAILDIIALGYVYIGDLK----FVQSLLDMMSGIVDSLKDDEPLLDAI 205
             E++  G    E    L+ + + Y    +L+    F++  L+M   +   L  D P     
Sbjct:  1076 EELTLGKDKPENARTLNELGVLYFLQNNLETAEQFLKRSLEMRERV---LGPDHPDCAQS 1132

Query:   206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
             L ++ ++ +  + YEK+  +Y+R +++           L  ++  +A +    G+  KAV
Sbjct:  1133 LNNLAALCNEKKQYEKAEELYERALDIRRRALAPDHPSLAYTVKHLAILYKKTGKVDKAV 1192

Query:   266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325
              +Y   + I + + G +   +   L +L  L  +  K  +A  ++ R LKIY    G   
Sbjct:  1193 PLYELAVEIRQKSFGPKHPSVATALVNLAVLHSQMKKHSEALPLYERALKIYEDSLGRMH 1252

Query:   326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358
              RVG  + +LA      GN E+A ELYK+A+ +
Sbjct:  1253 PRVGETLKNLAVLSYEEGNFEKAAELYKRAMEI 1285

GO:0001822 "kidney development" evidence=ISO

GO:0001947 "heart looping" evidence=ISO

GO:0003283 "atrial septum development" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005929 "cilium" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IMP

GO:0007163 "establishment or maintenance of cell polarity" evidence=IMP

GO:0007368 "determination of left/right symmetry" evidence=ISO;IMP

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0030198 "extracellular matrix organization" evidence=IMP

GO:0030324 "lung development" evidence=ISO

GO:0030814 "regulation of cAMP metabolic process" evidence=IMP

GO:0035469 "determination of pancreatic left/right asymmetry" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

GO:0045494 "photoreceptor cell maintenance" evidence=ISO

GO:0048496 "maintenance of organ identity" evidence=ISO;IMP

GO:0060027 "convergent extension involved in gastrulation" evidence=ISO

GO:0060271 "cilium morphogenesis" evidence=IMP

GO:0060993 "kidney morphogenesis" evidence=ISO;IMP

GO:0071908 "determination of intestine left/right asymmetry" evidence=ISO

GO:0071909 "determination of stomach left/right asymmetry" evidence=ISO

GO:0071910 "determination of liver left/right asymmetry" evidence=ISO

GO:0072189 "ureter development" evidence=ISO

GO:0072372 "primary cilium" evidence=ISO

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00150121	hypothetical protein (579 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0035030001	hypothetical protein (227 aa)			•						0.499
	grail3.0030022101	annotation not avaliable (116 aa)			•						0.494

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	519
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	8e-08
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-07
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-07
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	8e-07
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	8e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.002
pfam13374	42	pfam13374, TPR_10, Tetratricopeptide repeat	0.002
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.003

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 49.3 bits (118), Expect = 8e-08
 Identities = 13/77 (16%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG 259
           P L A L ++  +   L +Y++++ + ++ + +     G+       +L  +A++  ++G
Sbjct: 2   PDLAAALNNLALVLRRLGDYDEALELLEKALELAR-ELGEDHPETARALNNLARLYLALG 60

Query: 260 RAKKAVEIYHRVITILE 276
              +A+E   + + + E
Sbjct: 61  DYDEALEYLEKALALRE 77

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349
           L +L  +  + G   +A  +  + L++  +  GE+      A+ +LA    A G+ +EA+
Sbjct: 8   LNNLALVLRRLGDYDEALELLEKALELA-RELGEDHPETARALNNLARLYLALGDYDEAL 66

Query: 350 ELYKKALRVIKD 361
           E  +KAL + + 
Sbjct: 67  EYLEKALALREA 78

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438
           LA +L  +G   E  ELLE+ L +  +  G++HP     L NLA  Y    ++ EA   L
Sbjct: 11  LALVLRRLGDYDEALELLEKALELAREL-GEDHPETARALNNLARLYLALGDYDEALEYL 69

Query: 439 RICLDIMTK 447
              L +   
Sbjct: 70  EKALALREA 78

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 46.6 bits (111), Expect = 8e-07
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL 470
           HP     L NLA    R  ++ EA  LL   L++  + +G D    +  + +L      L
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALEL-ARELGEDHPETARALNNLARLYLAL 59

Query: 471 NRDKEAEKLVLEALYIRE 488
               EA + + +AL +RE
Sbjct: 60  GDYDEALEYLEKALALRE 77

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK 302
            L  +L  +A VL  +G   +A+E+  + + +     G +  +    L +L  L++  G 
Sbjct: 3   DLAAALNNLALVLRRLGDYDEALELLEKALELARE-LGEDHPETARALNNLARLYLALGD 61

Query: 303 AVDAESVFSRILKIYTK 319
             +A     + L +   
Sbjct: 62  YDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE 307
           LL +  +   +G   +A+E Y +    LEL+     A      ++L + + K GK  +A 
Sbjct: 3   LLNLGNLYYKLGDYDEALEYYEKA---LELDPDNADA-----YYNLAAAYYKLGKYEEAL 54

Query: 308 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358
             + + L++              A  +L  A    G  EEA+E Y+KAL +
Sbjct: 55  EDYEKALELDPDNA--------KAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 18/114 (15%)

Query: 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ 390
           A+ +L +     G+ +EA+E Y+KAL +  D +              +LA   + +G+ +
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADA--------YYNLAAAYYKLGKYE 51

Query: 391 EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444
           E  E  E+ L +         P       NL  +Y +   + EA       L++
Sbjct: 52  EALEDYEKALELD--------PDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG 387
           +  A+ +LA      G+ +EA+EL +KAL + +              +  +LA L   +G
Sbjct: 4   LAAALNNLALVLRRLGDYDEALELLEKALELAR--ELGEDHPETARALN-NLARLYLALG 60

Query: 388 RGQEGRELLEECL 400
              E  E LE+ L
Sbjct: 61  DYDEALEYLEKAL 73

Length = 78

>gnl|CDD|205553 pfam13374, TPR_10, Tetratricopeptide repeat

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 460 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 494
           + +L   L    R +EAE+L+ EAL IR    G D
Sbjct: 5   LNNLARALRAQGRYEEAEELLEEALAIRRRVLGPD 39

Length = 42

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 39.4 bits (90), Expect = 0.003
 Identities = 54/270 (20%), Positives = 99/270 (36%), Gaps = 22/270 (8%)

Query: 224 LVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283
           L+   +  +        ++ L+   L +       G          ++  + E     E 
Sbjct: 25  LLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEK 84

Query: 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG 343
           A  +  L +L    +  G  ++A   +   L++  K    +             A    G
Sbjct: 85  ALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELG 144

Query: 344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 403
           + EEA+ELY+KAL +  + N        +    + L  LL  +GR +E  ELLE+ L + 
Sbjct: 145 DYEEALELYEKALELDPELNE-------LAEALLALGALLEALGRYEEALELLEKALKLN 197

Query: 404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 463
                +        LLNL   Y +   + EA       L++      PD+    +   +L
Sbjct: 198 PDDDAEA-------LLNLGLLYLKLGKYEEALEYYEKALELD-----PDNAEALY---NL 242

Query: 464 GITLYHLNRDKEAEKLVLEALYIREIAFGK 493
            + L  L R +EA + + +AL +    +  
Sbjct: 243 ALLLLELGRYEEALEALEKALELDPDLYNL 272

Length = 291

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	519
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.97
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.96
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.94
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.94
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.94
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.93
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.93
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.93
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.92
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.91
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.9
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.9
KOG1126	638	consensus DNA-binding cell division cycle control	99.9
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.89
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.89
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.89
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.87
KOG1126	638	consensus DNA-binding cell division cycle control	99.87
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.87
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.85
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.85
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.84
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.84
KOG2076	895	consensus RNA polymerase III transcription factor	99.83
PLN03218	1060	maturation of RBCL 1; Provisional	99.82
PRK04841	903	transcriptional regulator MalT; Provisional	99.82
KOG2003	840	consensus TPR repeat-containing protein [General f	99.82
PLN03218	1060	maturation of RBCL 1; Provisional	99.81
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.81
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.79
KOG1129	478	consensus TPR repeat-containing protein [General f	99.79
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.78
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.78
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.78
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.77
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.77
PRK14574	822	hmsH outer membrane protein; Provisional	99.76
KOG2003	840	consensus TPR repeat-containing protein [General f	99.76
PRK12370	553	invasion protein regulator; Provisional	99.76
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.76
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.76
PRK12370	553	invasion protein regulator; Provisional	99.76
KOG1129	478	consensus TPR repeat-containing protein [General f	99.76
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.75
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.75
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.74
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.74
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.74
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.74
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.73
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.72
PRK11189	296	lipoprotein NlpI; Provisional	99.72
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.72
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.72
PRK14574	822	hmsH outer membrane protein; Provisional	99.71
PRK11189	296	lipoprotein NlpI; Provisional	99.71
KOG2076	895	consensus RNA polymerase III transcription factor	99.7
PLN03077	857	Protein ECB2; Provisional	99.7
PRK04841	903	transcriptional regulator MalT; Provisional	99.69
PLN03077	857	Protein ECB2; Provisional	99.69
KOG1125	579	consensus TPR repeat-containing protein [General f	99.69
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.69
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.68
KOG1125	579	consensus TPR repeat-containing protein [General f	99.65
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.65
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.65
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.65
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.64
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.64
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.63
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.63
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.62
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.6
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.58
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.57
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.57
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.53
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.5
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.48
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.48
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.48
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.46
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.45
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.43
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.41
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.41
PLN02789	320	farnesyltranstransferase	99.41
PLN02789	320	farnesyltranstransferase	99.4
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.36
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	99.36
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.36
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.35
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.35
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.32
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.3
KOG2300	629	consensus Uncharacterized conserved protein [Funct	99.3
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.28
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.28
PRK15359	144	type III secretion system chaperone protein SscB;	99.26
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	99.26
PRK15359	144	type III secretion system chaperone protein SscB;	99.25
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.23
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.2
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.18
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.16
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.16
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.15
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.15
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.14
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.14
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.14
KOG1585	308	consensus Protein required for fusion of vesicles	99.14
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.13
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.12
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.11
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.1
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.08
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.08
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.07
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.07
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.06
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.06
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	99.04
KOG2300	629	consensus Uncharacterized conserved protein [Funct	99.03
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.03
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.03
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.03
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.02
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.02
KOG0553	304	consensus TPR repeat-containing protein [General f	99.02
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.02
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.01
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.01
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.01
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.0
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.97
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.97
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.97
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.94
KOG1585	308	consensus Protein required for fusion of vesicles	98.93
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	98.92
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.92
KOG0553	304	consensus TPR repeat-containing protein [General f	98.92
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.87
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.87
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.83
PF12688	120	TPR_5: Tetratrico peptide repeat	98.79
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.77
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	98.75
PF12688	120	TPR_5: Tetratrico peptide repeat	98.75
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.73
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.72
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.69
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.67
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.66
KOG1586	288	consensus Protein required for fusion of vesicles	98.65
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.63
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.62
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	98.61
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.6
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.6
PRK10803	263	tol-pal system protein YbgF; Provisional	98.6
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.6
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.59
PRK10803	263	tol-pal system protein YbgF; Provisional	98.59
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.58
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.56
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.55
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	98.54
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.53
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	98.53
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.53
KOG1586	288	consensus Protein required for fusion of vesicles	98.49
KOG2471	696	consensus TPR repeat-containing protein [General f	98.49
KOG4555	175	consensus TPR repeat-containing protein [Function	98.48
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.48
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.47
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.45
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.43
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.43
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.43
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	98.41
KOG4555	175	consensus TPR repeat-containing protein [Function	98.4
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.39
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.38
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.36
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.33
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	98.32
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.31
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.3
PF13512	142	TPR_18: Tetratricopeptide repeat	98.29
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.28
KOG2471	696	consensus TPR repeat-containing protein [General f	98.27
PRK11906	458	transcriptional regulator; Provisional	98.27
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	98.26
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.23
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.23
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.22
PRK15331	165	chaperone protein SicA; Provisional	98.22
PF13512	142	TPR_18: Tetratricopeptide repeat	98.22
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.21
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.2
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.2
PRK15331	165	chaperone protein SicA; Provisional	98.19
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.17
PRK11906	458	transcriptional regulator; Provisional	98.15
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.13
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.1
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	98.1
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.1
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.09
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.07
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.03
KOG4234	271	consensus TPR repeat-containing protein [General f	98.02
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.98
COG5159	421	RPN6 26S proteasome regulatory complex component [	97.97
KOG4234	271	consensus TPR repeat-containing protein [General f	97.97
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.89
KOG1463	411	consensus 26S proteasome regulatory complex, subun	97.87
PF13371	73	TPR_9: Tetratricopeptide repeat	97.87
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.86
KOG1463	411	consensus 26S proteasome regulatory complex, subun	97.86
PF13371	73	TPR_9: Tetratricopeptide repeat	97.84
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.81
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.76
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.75
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.75
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.75
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.74
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.68
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.67
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.65
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.63
COG5159	421	RPN6 26S proteasome regulatory complex component [	97.63
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.61
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.6
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.6
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.58
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.57
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.57
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.57
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.52
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.45
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.37
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.36
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.36
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.36
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.34
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.32
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.32
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.28
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.26
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.21
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.14
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.11
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.08
PF13431	34	TPR_17: Tetratricopeptide repeat	97.05
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.03
PF13428	44	TPR_14: Tetratricopeptide repeat	97.02
PF13428	44	TPR_14: Tetratricopeptide repeat	97.02
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.0
KOG1550	552	consensus Extracellular protein SEL-1 and related	96.96
PF13431	34	TPR_17: Tetratricopeptide repeat	96.93
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.93
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.92
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.9
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.88
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.78
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.75
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.72
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.71
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.67
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.67
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.65
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.65
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.59
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.5
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.47
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.18
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.89
KOG3783	546	consensus Uncharacterized conserved protein [Funct	95.82
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.81
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.79
KOG4814	872	consensus Uncharacterized conserved protein [Funct	95.68
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.63
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.51
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.5
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.43
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.42
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	95.31
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	95.23
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.12
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	95.12
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.09
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	95.08
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.92
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	94.82
KOG3783	546	consensus Uncharacterized conserved protein [Funct	94.79
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	94.43
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	94.36
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.27
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	94.23
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	94.18
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	93.76
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	93.74
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	93.73
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	93.7
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	93.53
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	93.5
KOG0687	393	consensus 26S proteasome regulatory complex, subun	93.39
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	93.36
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.34
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.34
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	93.33
COG5187	412	RPN7 26S proteasome regulatory complex component,	93.28
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	93.07
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.76
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	92.71
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	92.7
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	92.44
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.25
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	92.23
KOG2908	380	consensus 26S proteasome regulatory complex, subun	92.23
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	92.18
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	92.08
KOG1258	577	consensus mRNA processing protein [RNA processing	92.07
KOG4507	886	consensus Uncharacterized conserved protein, conta	92.02
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	91.96
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	91.87
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	91.67
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.65
KOG4507	886	consensus Uncharacterized conserved protein, conta	91.51
COG5187	412	RPN7 26S proteasome regulatory complex component,	91.49
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	91.48
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	91.16
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	91.16
KOG0687	393	consensus 26S proteasome regulatory complex, subun	91.15
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	91.04
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.88
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	90.77
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	90.65
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	90.44
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	90.39
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	90.25
PRK14707	2710	hypothetical protein; Provisional	89.96
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	89.93
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	89.8
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	89.79
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	89.66
KOG4014	248	consensus Uncharacterized conserved protein (conta	89.43
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	89.33
PRK10941	269	hypothetical protein; Provisional	89.32
COG3629	280	DnrI DNA-binding transcriptional activator of the	88.97
COG3629	280	DnrI DNA-binding transcriptional activator of the	88.7
PRK10941	269	hypothetical protein; Provisional	88.67
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	88.44
PF12854	34	PPR_1: PPR repeat	88.25
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	88.17
KOG0508	615	consensus Ankyrin repeat protein [General function	87.81
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	87.54
COG3947	361	Response regulator containing CheY-like receiver a	87.51
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	87.44
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	87.06
PRK14707	2710	hypothetical protein; Provisional	86.92
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	86.75
KOG0508	615	consensus Ankyrin repeat protein [General function	86.75
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	86.47
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.46
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	86.12
PF13041	50	PPR_2: PPR repeat family	86.11
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.01
KOG4563	400	consensus Cell cycle-regulated histone H1-binding	85.67
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	85.33
PF12854	34	PPR_1: PPR repeat	85.28
COG4976	287	Predicted methyltransferase (contains TPR repeat)	84.98
KOG4014	248	consensus Uncharacterized conserved protein (conta	83.46
COG3947	361	Response regulator containing CheY-like receiver a	82.86
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	82.51
PF13041	50	PPR_2: PPR repeat family	82.46
KOG3024	312	consensus Uncharacterized conserved protein [Funct	82.34
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	82.24
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	81.95
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	81.87
COG2178	204	Predicted RNA-binding protein of the translin fami	81.77
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	81.71
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	81.57
COG4976	287	Predicted methyltransferase (contains TPR repeat)	80.24
KOG2581	493	consensus 26S proteasome regulatory complex, subun	80.18
KOG4814	872	consensus Uncharacterized conserved protein [Funct	80.16

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=100.00  E-value=1.6e-33  Score=262.13  Aligned_cols=311  Identities=28%  Similarity=0.382  Sum_probs=294.2

Q ss_pred             HHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHH
Q 010063          188 MSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI  267 (519)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  267 (519)
                      .....+..+...|....+...++..|..+|+|++|+..+++++++..+..|.+++.+......+|.+|..++++.+|+.+
T Consensus       184 ~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~l  263 (508)
T KOG1840|consen  184 LDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNL  263 (508)
T ss_pred             HHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            33334456778888888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHH
Q 010063          268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE  347 (519)
Q Consensus       268 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  347 (519)
                      |++|+.+.+...|+++|.++.++.+||.+|...|++++|..++++|++|.++..+..++.+...+.+++.++..++++++
T Consensus       264 y~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Ee  343 (508)
T KOG1840|consen  264 YEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEE  343 (508)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 010063          348 AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR  427 (519)
Q Consensus       348 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  427 (519)
                      |..++++++++...  .++++++.++.++.+||.+|..+|++++|.+++++++.+.++..+..++.+...+.++|..|.+
T Consensus       344 a~~l~q~al~i~~~--~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~  421 (508)
T KOG1840|consen  344 AKKLLQKALKIYLD--APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEE  421 (508)
T ss_pred             HHHHHHHHHHHHHh--hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHH
Confidence            99999999999985  3688888999999999999999999999999999999999999888899999999999999999


Q ss_pred             ccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhh
Q 010063          428 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKL  501 (519)
Q Consensus       428 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  501 (519)
                      .+++.+|..+|.++..+. +..|+++|++...+.+|+.+|..+|++++|+++..+++...+..+|..++.....
T Consensus       422 ~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~  494 (508)
T KOG1840|consen  422 LKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDE  494 (508)
T ss_pred             hcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHH
Confidence            999999999999999999 8899999999999999999999999999999999999999999999988877544

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=7.6e-36  Score=270.24  Aligned_cols=327  Identities=18%  Similarity=0.213  Sum_probs=244.7

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhc-----
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL-----  195 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----  195 (519)
                      +-+.+..+...|++++|+.+|+.++++          .|...+++.++|.++...|+.+.|.+.|..++++...+     
T Consensus       119 ysn~aN~~kerg~~~~al~~y~~aiel----------~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s  188 (966)
T KOG4626|consen  119 YSNLANILKERGQLQDALALYRAAIEL----------KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARS  188 (966)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHhc----------CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhc
Confidence            455888899999999999999999998          88888899999999999999888888888888764100     


Q ss_pred             ----------------------CCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010063          196 ----------------------KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK  253 (519)
Q Consensus       196 ----------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  253 (519)
                                            -...|..+.+|.+||.++..+|+...|+..|++|+.+        +|....+|.++|.
T Consensus       189 ~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--------dP~f~dAYiNLGn  260 (966)
T KOG4626|consen  189 DLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--------DPNFLDAYINLGN  260 (966)
T ss_pred             chhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--------CCcchHHHhhHHH
Confidence                                  0011223334555666666666666666666666554        3555677777777


Q ss_pred             HHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 010063          254 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMC  333 (519)
Q Consensus       254 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  333 (519)
                      +|...+.+++|+..|.+|+.+        .|..+.++.++|.+|+++|..+-|+..|+++++.        .|....+++
T Consensus       261 V~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--------~P~F~~Ay~  324 (966)
T KOG4626|consen  261 VYKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--------QPNFPDAYN  324 (966)
T ss_pred             HHHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--------CCCchHHHh
Confidence            777777777777777777765        5666777777777777777777777777777763        567777888


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh
Q 010063          334 SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS  413 (519)
Q Consensus       334 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  413 (519)
                      +||..+...|+..+|+.+|.+++.+.       +.+   +.+.++||.+|.++|.+++|..+|.+++++        .|.
T Consensus       325 NlanALkd~G~V~ea~~cYnkaL~l~-------p~h---adam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~  386 (966)
T KOG4626|consen  325 NLANALKDKGSVTEAVDCYNKALRLC-------PNH---ADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPE  386 (966)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhC-------Ccc---HHHHHHHHHHHHHhccchHHHHHHHHHHhh--------Chh
Confidence            88888888888888888888888773       223   445688888888888888888888888875        466


Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCC
Q 010063          414 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  493 (519)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  493 (519)
                      .+.+..+||.+|.++|++++|+.+|++++.+        .|..++++.++|.+|..+|+.+.|+..|.+|+.+.      
T Consensus       387 ~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n------  452 (966)
T KOG4626|consen  387 FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN------  452 (966)
T ss_pred             hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC------
Confidence            6778888888888888888888888888874        47778888888888888888888888888887754      


Q ss_pred             CCCcchhhHHHHHHHHHHHHhhhc
Q 010063          494 DSLPVGKLFCFVLFGLVWFCLLLY  517 (519)
Q Consensus       494 ~~~~~~~~~~~~~l~~~~~~lg~~  517 (519)
                        |..  +.+..|||.+|...|+.
T Consensus       453 --Pt~--AeAhsNLasi~kDsGni  472 (966)
T KOG4626|consen  453 --PTF--AEAHSNLASIYKDSGNI  472 (966)
T ss_pred             --cHH--HHHHhhHHHHhhccCCc
Confidence              333  45677888888887764

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=3.9e-36  Score=272.06  Aligned_cols=292  Identities=16%  Similarity=0.197  Sum_probs=260.7

Q ss_pred             ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (519)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (519)
                      .|..+.+|.++|.++..+|+...|+..|+++..+.       |....+|.+||.+|...+.+++|+..|.+|+.+     
T Consensus       214 qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-------P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-----  281 (966)
T KOG4626|consen  214 QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-------PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-----  281 (966)
T ss_pred             CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-------CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-----
Confidence            55566677788888888888888888888887664       777888999999999999999999999999986     


Q ss_pred             CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (519)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (519)
                         .|..+.++.++|.+|+.+|..+-|+..|++++++        .|....++++||..+...|+..+|+.+|.+++.+ 
T Consensus       282 ---rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-  349 (966)
T KOG4626|consen  282 ---RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-  349 (966)
T ss_pred             ---CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-
Confidence               3566889999999999999999999999999997        6888999999999999999999999999999996 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010063          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  397 (519)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (519)
                             .|..+.++++||.+|..+|.+++|..+|.++++..          +..+.+.++||.+|.++|++++|+..|+
T Consensus       350 -------~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~----------p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk  412 (966)
T KOG4626|consen  350 -------CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF----------PEFAAAHNNLASIYKQQGNLDDAIMCYK  412 (966)
T ss_pred             -------CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC----------hhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence                   36677899999999999999999999999999983          4457788999999999999999999999


Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHH
Q 010063          398 ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE  477 (519)
Q Consensus       398 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  477 (519)
                      +++.+        .|..+.++.++|..|..+|+.+.|+.+|.+|+.+        +|..+++..+||.+|...|+..+|+
T Consensus       413 ealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--------nPt~AeAhsNLasi~kDsGni~~AI  476 (966)
T KOG4626|consen  413 EALRI--------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--------NPTFAEAHSNLASIYKDSGNIPEAI  476 (966)
T ss_pred             HHHhc--------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--------CcHHHHHHhhHHHHhhccCCcHHHH
Confidence            99985        6888999999999999999999999999999984        6899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhh
Q 010063          478 KLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLL  516 (519)
Q Consensus       478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~  516 (519)
                      ..|++++.+.     ||.|+.     +.|+..++.-.-+
T Consensus       477 ~sY~~aLklk-----PDfpdA-----~cNllh~lq~vcd  505 (966)
T KOG4626|consen  477 QSYRTALKLK-----PDFPDA-----YCNLLHCLQIVCD  505 (966)
T ss_pred             HHHHHHHccC-----CCCchh-----hhHHHHHHHHHhc
Confidence            9999999865     666655     6688777654433

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=100.00  E-value=1.6e-31  Score=248.75  Aligned_cols=308  Identities=23%  Similarity=0.330  Sum_probs=285.6

Q ss_pred             CCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhh-hhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Q 010063          155 GNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV-DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL  233 (519)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  233 (519)
                      +...|....+...++..|...|+|++|+..++.++++. +..+..++.+...+..+|.+|..++++.+|+..|++|+.+.
T Consensus       192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~  271 (508)
T KOG1840|consen  192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR  271 (508)
T ss_pred             ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            55678888888889999999999999999999998885 44567889999988889999999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010063          234 ESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI  313 (519)
Q Consensus       234 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  313 (519)
                      +..+|+++|.++.++.+||.+|...|++++|..++++|+++.++..+..++.+...+.+++.++..++++++|..+++++
T Consensus       272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a  351 (508)
T KOG1840|consen  272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA  351 (508)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999888899999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHH
Q 010063          314 LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGR  393 (519)
Q Consensus       314 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  393 (519)
                      ++++....+++++.++..+.+||.+|..+|++++|.+++++++.+.++.  .+..+..+...++++|..|.+.+++.+|.
T Consensus       352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~--~~~~~~~~~~~l~~la~~~~~~k~~~~a~  429 (508)
T KOG1840|consen  352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILREL--LGKKDYGVGKPLNQLAEAYEELKKYEEAE  429 (508)
T ss_pred             HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc--ccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence            9999999999999999999999999999999999999999999998874  45557777888899999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHH
Q 010063          394 ELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI  465 (519)
Q Consensus       394 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  465 (519)
                      .+|.++..+. +..|+++|++...+.+||.+|..+|++++|+++.+.++...+...+..++.....-..++.
T Consensus       430 ~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (508)
T KOG1840|consen  430 QLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLAD  500 (508)
T ss_pred             HHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhH
Confidence            9999999999 8889999999999999999999999999999999999999999888887776554444433

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.97  E-value=1.3e-27  Score=239.86  Aligned_cols=338  Identities=15%  Similarity=0.072  Sum_probs=258.8

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (519)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (519)
                      ...+...|..++..|+|++|+..|++++..          .|. +..+.++|.+|..+|++++|+..+++++++.     
T Consensus       127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~----------~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-----  190 (615)
T TIGR00990       127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIEC----------KPD-PVYYSNRAACHNALGDWEKVVEDTTAALELD-----  190 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-----
Confidence            445778899999999999999999999886          333 4578899999999999999999999988764     


Q ss_pred             CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHH----------------------------------------------
Q 010063          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVIN----------------------------------------------  231 (519)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----------------------------------------------  231 (519)
                        |....++..+|.+|...|++++|+..+..+..                                              
T Consensus       191 --p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~  268 (615)
T TIGR00990       191 --PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYL  268 (615)
T ss_pred             --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence              45556788899999999999988765533211                                              


Q ss_pred             -----------------------------------------------HHHHhcC--CCCHHHHHHHHHHHHHHhhcCCHH
Q 010063          232 -----------------------------------------------VLESRYG--KTSILLVTSLLGMAKVLGSIGRAK  262 (519)
Q Consensus       232 -----------------------------------------------~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~  262 (519)
                                                                     .++....  ...+....++..+|.++..+|+++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~  348 (615)
T TIGR00990       269 QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHL  348 (615)
T ss_pred             HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH
Confidence                                                           1111110  113455667888899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 010063          263 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN  342 (519)
Q Consensus       263 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  342 (519)
                      +|+..+++++++        .|....++..+|.++...|++++|+..+++++++        +|....++..+|.++...
T Consensus       349 eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~~~  412 (615)
T TIGR00990       349 EALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQLHFIK  412 (615)
T ss_pred             HHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHc
Confidence            999999999876        5666788899999999999999999999999875        345566889999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 010063          343 GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA  422 (519)
Q Consensus       343 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  422 (519)
                      |++++|+..|++++++       .|+.   ...+.++|.++...|++++|+..+++++..        .|....++..+|
T Consensus       413 g~~~~A~~~~~kal~l-------~P~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg  474 (615)
T TIGR00990       413 GEFAQAGKDYQKSIDL-------DPDF---IFSHIQLGVTQYKEGSIASSMATFRRCKKN--------FPEAPDVYNYYG  474 (615)
T ss_pred             CCHHHHHHHHHHHHHc-------CccC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHHH
Confidence            9999999999999887       2333   345688999999999999999999999874        345567888999


Q ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhH
Q 010063          423 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLF  502 (519)
Q Consensus       423 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  502 (519)
                      .++...|++++|+..|++++.+.... .+.+......+...+..+...|++++|..++++++.+.     +++     ..
T Consensus       475 ~~~~~~g~~~~A~~~~~~Al~l~p~~-~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-----p~~-----~~  543 (615)
T TIGR00990       475 ELLLDQNKFDEAIEKFDTAIELEKET-KPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-----PEC-----DI  543 (615)
T ss_pred             HHHHHccCHHHHHHHHHHHHhcCCcc-ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-----CCc-----HH
Confidence            99999999999999999999864221 01111222222222333444799999999999988752     222     23


Q ss_pred             HHHHHHHHHHHhhhcc
Q 010063          503 CFVLFGLVWFCLLLYK  518 (519)
Q Consensus       503 ~~~~l~~~~~~lg~~k  518 (519)
                      ++..+|.++..+|+++
T Consensus       544 a~~~la~~~~~~g~~~  559 (615)
T TIGR00990       544 AVATMAQLLLQQGDVD  559 (615)
T ss_pred             HHHHHHHHHHHccCHH
Confidence            4778899999988864

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.96  E-value=3.6e-26  Score=229.37  Aligned_cols=316  Identities=15%  Similarity=0.133  Sum_probs=254.6

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhh--------
Q 010063          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGI--------  191 (519)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------  191 (519)
                      ...+.+.++...|++++|+..+++++++          .|....++..+|.+|..+|++++|+..+..+...        
T Consensus       162 ~~~n~a~~~~~l~~~~~Ai~~~~~al~l----------~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~  231 (615)
T TIGR00990       162 YYSNRAACHNALGDWEKVVEDTTAALEL----------DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQS  231 (615)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHc----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHH
Confidence            4778889999999999999999999998          7888899999999999999999997654332110        


Q ss_pred             --------------------------------------------------------------------------------
Q 010063          192 --------------------------------------------------------------------------------  191 (519)
Q Consensus       192 --------------------------------------------------------------------------------  191 (519)
                                                                                                      
T Consensus       232 ~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~  311 (615)
T TIGR00990       232 AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYE  311 (615)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHH
Confidence                                                                                            


Q ss_pred             -----hhh-c--CCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHH
Q 010063          192 -----VDS-L--KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKK  263 (519)
Q Consensus       192 -----~~~-~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  263 (519)
                           .+. +  +...|..+.++..+|.++..+|++++|+..+++++.+        +|....++..+|.++...|++++
T Consensus       312 ~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~e  383 (615)
T TIGR00990       312 EAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDK  383 (615)
T ss_pred             HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHH
Confidence                 000 0  0113455566888899999999999999999999875        24456788899999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC
Q 010063          264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG  343 (519)
Q Consensus       264 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  343 (519)
                      |+..++++++.        .|....++..+|.++...|++++|+..|++++++        .|.....+.++|.++...|
T Consensus       384 A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~~~~g  447 (615)
T TIGR00990       384 AEEDFDKALKL--------NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQYKEG  447 (615)
T ss_pred             HHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHHHHCC
Confidence            99999999886        4556788999999999999999999999999985        4666678899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 010063          344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA  423 (519)
Q Consensus       344 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  423 (519)
                      ++++|+..+++++...       |+.   ..++..+|.++...|++++|+..|++++.+..... .........+...+.
T Consensus       448 ~~~eA~~~~~~al~~~-------P~~---~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~-~~~~~~~~l~~~a~~  516 (615)
T TIGR00990       448 SIASSMATFRRCKKNF-------PEA---PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK-PMYMNVLPLINKALA  516 (615)
T ss_pred             CHHHHHHHHHHHHHhC-------CCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc-cccccHHHHHHHHHH
Confidence            9999999999999862       333   34568899999999999999999999998753321 111222222333334


Q ss_pred             HHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010063          424 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  488 (519)
Q Consensus       424 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  488 (519)
                      ++...|++++|..++++++.+        +|....++..+|.++..+|++++|+.+|++++++.+
T Consensus       517 ~~~~~~~~~eA~~~~~kAl~l--------~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~  573 (615)
T TIGR00990       517 LFQWKQDFIEAENLCEKALII--------DPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR  573 (615)
T ss_pred             HHHHhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence            445579999999999999984        355556788999999999999999999999998865

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.94  E-value=3e-24  Score=214.64  Aligned_cols=323  Identities=12%  Similarity=0.012  Sum_probs=209.3

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      +...+......|++++|+..++++++.          .|..+.++..+|.++...|++++|+..+++++.+.       |
T Consensus        79 l~~l~~~~l~~g~~~~A~~~l~~~l~~----------~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-------P  141 (656)
T PRK15174         79 LRRWVISPLASSQPDAVLQVVNKLLAV----------NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-------S  141 (656)
T ss_pred             HHHHhhhHhhcCCHHHHHHHHHHHHHh----------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------C
Confidence            445555556677777777777777776          66666677777777777777777777777776653       3


Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (519)
                      ....++..+|.++...|++++|+..+++++...     ++++.   .+..++ .+...|++++|+..++++++..     
T Consensus       142 ~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-----P~~~~---a~~~~~-~l~~~g~~~eA~~~~~~~l~~~-----  207 (656)
T PRK15174        142 GNSQIFALHLRTLVLMDKELQAISLARTQAQEV-----PPRGD---MIATCL-SFLNKSRLPEDHDLARALLPFF-----  207 (656)
T ss_pred             CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-----CCCHH---HHHHHH-HHHHcCCHHHHHHHHHHHHhcC-----
Confidence            333446667777777777777777777655431     22222   222332 3666777777777777665541     


Q ss_pred             CCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHH----HHHHHHHHH
Q 010063          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE----AVELYKKAL  356 (519)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al  356 (519)
                        .+........++.++...|++++|+..+++++..        +|....++.++|.++...|++++    |+..+++++
T Consensus       208 --~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al  277 (656)
T PRK15174        208 --ALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--------GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL  277 (656)
T ss_pred             --CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence              1111223345567777778888888888777763        34455667778888888888775    677777777


Q ss_pred             HHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHH
Q 010063          357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER  436 (519)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  436 (519)
                      +.          .|....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+.
T Consensus       278 ~l----------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--------~P~~~~a~~~La~~l~~~G~~~eA~~  339 (656)
T PRK15174        278 QF----------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--------HPDLPYVRAMYARALRQVGQYTAASD  339 (656)
T ss_pred             hh----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            65          2344567777888888888888888888877764        34444566677888888888888888


Q ss_pred             HHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhh
Q 010063          437 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLL  515 (519)
Q Consensus       437 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg  515 (519)
                      .|++++..        +|........+|.++...|++++|+..|+++++...+.     .......+...+...+...+
T Consensus       340 ~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~-----~~~~~~ea~~~~~~~~~~~~  405 (656)
T PRK15174        340 EFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH-----LPQSFEEGLLALDGQISAVN  405 (656)
T ss_pred             HHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh-----chhhHHHHHHHHHHHHHhcC
Confidence            88777762        23333445556777778888888888888887765332     22222345555555555444

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.94  E-value=6.8e-24  Score=212.05  Aligned_cols=321  Identities=11%  Similarity=0.042  Sum_probs=259.1

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCc
Q 010063          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (519)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (519)
                      .+...+..+...|++++|..+++..+..          .|..+.++..+|.+....|++++|+..+++++...       
T Consensus        44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~----------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-------  106 (656)
T PRK15174         44 NIILFAIACLRKDETDVGLTLLSDRVLT----------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-------  106 (656)
T ss_pred             CHHHHHHHHHhcCCcchhHHHhHHHHHh----------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-------
Confidence            3666778889999999999999999988          88888999999999999999999999999998775       


Q ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (519)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (519)
                      |....++..+|.++...|++++|+..+++++.+.        |....++..++.++...|++++|+..+++++..     
T Consensus       107 P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~-----  173 (656)
T PRK15174        107 VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--------SGNSQIFALHLRTLVLMDKELQAISLARTQAQE-----  173 (656)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-----
Confidence            4445568899999999999999999999998862        333567788999999999999999999987765     


Q ss_pred             CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010063          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (519)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (519)
                         .|.....+..++ .+...|++++|+..+++++...       .+........++.++...|++++|+..+++++.. 
T Consensus       174 ---~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~-------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~-  241 (656)
T PRK15174        174 ---VPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFF-------ALERQESAGLAVDTLCAVGKYQEAIQTGESALAR-  241 (656)
T ss_pred             ---CCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcC-------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence               233334444443 4788999999999999887641       1122223456788899999999999999999986 


Q ss_pred             HhhccCCCCchHHHHHHHHHHHHHHHcCChHH----HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHH
Q 010063          360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQE----GRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE  435 (519)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  435 (519)
                            .+++   ..++.++|.++...|++++    |+..+++++.+        .|....++..+|.++...|++++|+
T Consensus       242 ------~p~~---~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~  304 (656)
T PRK15174        242 ------GLDG---AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--------NSDNVRIVTLYADALIRTGQNEKAI  304 (656)
T ss_pred             ------CCCC---HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence                  3333   4566889999999999986    89999999874        3556688899999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhh
Q 010063          436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLL  515 (519)
Q Consensus       436 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg  515 (519)
                      ..+++++.+        +|+...++..+|.++...|++++|+..|+++++..     ++++     .....+|.++..+|
T Consensus       305 ~~l~~al~l--------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-----P~~~-----~~~~~~a~al~~~G  366 (656)
T PRK15174        305 PLLQQSLAT--------HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-----GVTS-----KWNRYAAAALLQAG  366 (656)
T ss_pred             HHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----ccch-----HHHHHHHHHHHHCC
Confidence            999999984        35556677889999999999999999999998742     2222     23556688888877


Q ss_pred             hc
Q 010063          516 LY  517 (519)
Q Consensus       516 ~~  517 (519)
                      ++
T Consensus       367 ~~  368 (656)
T PRK15174        367 KT  368 (656)
T ss_pred             CH
Confidence            63

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.94  E-value=2.3e-23  Score=222.60  Aligned_cols=341  Identities=14%  Similarity=0.069  Sum_probs=240.0

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchH--
Q 010063          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL--  201 (519)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--  201 (519)
                      .+..+...|++++|+..++++++.          .|..+.++..+|.++...|++++|+..|+++++...........  
T Consensus       275 ~G~~~~~~g~~~~A~~~l~~aL~~----------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~  344 (1157)
T PRK11447        275 QGLAAVDSGQGGKAIPELQQAVRA----------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES  344 (1157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence            366778899999999999999998          77778899999999999999999999999998765221110000  


Q ss_pred             -----HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010063          202 -----LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (519)
Q Consensus       202 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (519)
                           .......+|..+...|++++|+..|++++...        |....++..+|.++...|++++|+..|++++++..
T Consensus       345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--------P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p  416 (1157)
T PRK11447        345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD--------NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP  416 (1157)
T ss_pred             HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence                 11223456888999999999999999999862        23356788999999999999999999999997621


Q ss_pred             HhcC----------CCCh------------------------hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC
Q 010063          277 LNRG----------TESA------------------------DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (519)
Q Consensus       277 ~~~~----------~~~~------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (519)
                      ....          ...+                        .....+..+|.++...|++++|+..|++++++      
T Consensus       417 ~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~------  490 (1157)
T PRK11447        417 GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL------  490 (1157)
T ss_pred             CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence            1000          0000                        00112345677788899999999999999985      


Q ss_pred             CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHH------------------------------
Q 010063          323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM------------------------------  372 (519)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~------------------------------  372 (519)
                        .|....++..+|.+|...|++++|+..++++++...       +++..                              
T Consensus       491 --~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-------~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~  561 (1157)
T PRK11447        491 --DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-------NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWN  561 (1157)
T ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcC
Confidence              455566788999999999999999999999876421       11110                              


Q ss_pred             -----------------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC
Q 010063          373 -----------------------------------------ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH  411 (519)
Q Consensus       373 -----------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  411 (519)
                                                               ...+..+|.++...|++++|+..|+++++.        .
T Consensus       562 ~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--------~  633 (1157)
T PRK11447        562 SNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--------E  633 (1157)
T ss_pred             hhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence                                                     113345666667777777777777776653        3


Q ss_pred             hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc
Q 010063          412 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF  491 (519)
Q Consensus       412 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  491 (519)
                      |....++..++.+|...|++++|+..+++++..        .|+...++..+|.++...|++++|..++++++....   
T Consensus       634 P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~---  702 (1157)
T PRK11447        634 PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--------ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK---  702 (1157)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc---
Confidence            444556777777777777777777777766542        334445566777788888888888888887776431   


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHhhhc
Q 010063          492 GKDSLPVGKLFCFVLFGLVWFCLLLY  517 (519)
Q Consensus       492 ~~~~~~~~~~~~~~~l~~~~~~lg~~  517 (519)
                       ++.+....+..+..+|.++...|++
T Consensus       703 -~~~~~~~~a~~~~~~a~~~~~~G~~  727 (1157)
T PRK11447        703 -SQPPSMESALVLRDAARFEAQTGQP  727 (1157)
T ss_pred             -cCCcchhhHHHHHHHHHHHHHcCCH
Confidence             1112112234455667777777765

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.93  E-value=1.5e-22  Score=215.87  Aligned_cols=260  Identities=19%  Similarity=0.164  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc-----
Q 010063          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR-----  279 (519)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----  279 (519)
                      .+..+|.++...|++++|+..|+++++..        |....++..+|.++...|++++|...++++++......     
T Consensus       603 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  674 (899)
T TIGR02917       603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQ--------PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIG  674 (899)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            35555666666666666666666555431        11133445556666666666666666665554310000     


Q ss_pred             ---------------------CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 010063          280 ---------------------GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA  338 (519)
Q Consensus       280 ---------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  338 (519)
                                           ....|.....+..+|.++...|++++|+..|++++...        |.. ..+..++.+
T Consensus       675 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--------~~~-~~~~~l~~~  745 (899)
T TIGR02917       675 LAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--------PSS-QNAIKLHRA  745 (899)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--------CCc-hHHHHHHHH
Confidence                                 00011122233333444444444444444444443320        111 233344444


Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHH
Q 010063          339 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL  418 (519)
Q Consensus       339 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  418 (519)
                      +...|++++|...++++++.       .+++   ..++..+|.++...|++++|+..|+++++.        .|....++
T Consensus       746 ~~~~g~~~~A~~~~~~~l~~-------~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~  807 (899)
T TIGR02917       746 LLASGNTAEAVKTLEAWLKT-------HPND---AVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVL  807 (899)
T ss_pred             HHHCCCHHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHH
Confidence            44444444444444444432       1222   234455666666666666666666666543        23334556


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcc
Q 010063          419 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV  498 (519)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  498 (519)
                      ..+|.++...|+ .+|+.++++++.+        .|.....+..+|.++...|++++|..+++++++..     +..+  
T Consensus       808 ~~l~~~~~~~~~-~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-----~~~~--  871 (899)
T TIGR02917       808 NNLAWLYLELKD-PRALEYAEKALKL--------APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-----PEAA--  871 (899)
T ss_pred             HHHHHHHHhcCc-HHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCh--
Confidence            666666666666 6666666666653        12333455677888888888888888888888743     2233  


Q ss_pred             hhhHHHHHHHHHHHHhhhcc
Q 010063          499 GKLFCFVLFGLVWFCLLLYK  518 (519)
Q Consensus       499 ~~~~~~~~l~~~~~~lg~~k  518 (519)
                         .++.+++.++...|++.
T Consensus       872 ---~~~~~l~~~~~~~g~~~  888 (899)
T TIGR02917       872 ---AIRYHLALALLATGRKA  888 (899)
T ss_pred             ---HHHHHHHHHHHHcCCHH
Confidence               34778888888888763

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.93  E-value=1.3e-22  Score=216.34  Aligned_cols=302  Identities=17%  Similarity=0.190  Sum_probs=233.1

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchH
Q 010063          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL  201 (519)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  201 (519)
                      ...+..+...|++++|+..++++++.          .|....++..+|.++...|++++|+..+++++...       |.
T Consensus       571 ~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~  633 (899)
T TIGR02917       571 LALAQYYLGKGQLKKALAILNEAADA----------APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-------PD  633 (899)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHc----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CC
Confidence            33445556666666666666666544          44556678888888988999999998888877653       22


Q ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHh--------------------------cCCCCHHHHHHHHHHHHHH
Q 010063          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR--------------------------YGKTSILLVTSLLGMAKVL  255 (519)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------~~~~~~~~~~~~~~la~~~  255 (519)
                      ...++..+|.++...|++++|+..+++++......                          .....|.....+..+|.++
T Consensus       634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  713 (899)
T TIGR02917       634 SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLY  713 (899)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHH
Confidence            23457788888888888888888888877642110                          0001122344566788888


Q ss_pred             hhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 010063          256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL  335 (519)
Q Consensus       256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  335 (519)
                      ...|++++|+..|++++...        |.. ..+..++.++...|++++|...++++++.        .|....++..+
T Consensus       714 ~~~g~~~~A~~~~~~~~~~~--------~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~l  776 (899)
T TIGR02917       714 LRQKDYPAAIQAYRKALKRA--------PSS-QNAIKLHRALLASGNTAEAVKTLEAWLKT--------HPNDAVLRTAL  776 (899)
T ss_pred             HHCCCHHHHHHHHHHHHhhC--------CCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence            89999999999999888751        222 56778999999999999999999999874        35556788999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHH
Q 010063          336 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV  415 (519)
Q Consensus       336 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  415 (519)
                      |.++...|++++|+..|+++++.       .|++   ..++.+++.++...|+ .+|+.++++++...        |...
T Consensus       777 a~~~~~~g~~~~A~~~~~~~~~~-------~p~~---~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~--------~~~~  837 (899)
T TIGR02917       777 AELYLAQKDYDKAIKHYRTVVKK-------APDN---AVVLNNLAWLYLELKD-PRALEYAEKALKLA--------PNIP  837 (899)
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC--------CCCc
Confidence            99999999999999999999986       3333   3456889999999999 88999999998752        2334


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010063          416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL  484 (519)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  484 (519)
                      ..+..+|.++...|++++|..+++++++.        .|....++..++.++...|++++|...+++++
T Consensus       838 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       838 AILDTLGWLLVEKGEADRALPLLRKAVNI--------APEAAAIRYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            56778999999999999999999999983        24456778899999999999999999999886

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.93  E-value=6.6e-22  Score=189.01  Aligned_cols=314  Identities=16%  Similarity=0.128  Sum_probs=245.0

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhc
Q 010063          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (519)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (519)
                      ..+...+..+..+...|++++|+..++++++.          .|....++..+|.++...|++++|...++.++...   
T Consensus        33 ~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---   99 (389)
T PRK11788         33 NRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKV----------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP---   99 (389)
T ss_pred             hhccHHHHHHHHHHhcCChHHHHHHHHHHHhc----------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC---
Confidence            34444666777888999999999999999987          67778899999999999999999999999877632   


Q ss_pred             CCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010063          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (519)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (519)
                      .........++..+|.+|...|++++|+..|+++++.        .+....++..++.++...|++++|++.++++++..
T Consensus       100 ~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  171 (389)
T PRK11788        100 DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG  171 (389)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence            1122334456889999999999999999999998764        23345678899999999999999999999987652


Q ss_pred             HHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 010063          276 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA  355 (519)
Q Consensus       276 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  355 (519)
                      ..   +........+..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+..++++
T Consensus       172 ~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  240 (389)
T PRK11788        172 GD---SLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--------DPQCVRASILLGDLALAQGDYAAAIEALERV  240 (389)
T ss_pred             CC---cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            11   111223456778999999999999999999999885        2445567888999999999999999999999


Q ss_pred             HHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHH
Q 010063          356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE  435 (519)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  435 (519)
                      +...       +  .....++..++.+|...|++++|...+++++...        |+. ..+..++.++...|++++|.
T Consensus       241 ~~~~-------p--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--------p~~-~~~~~la~~~~~~g~~~~A~  302 (389)
T PRK11788        241 EEQD-------P--EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--------PGA-DLLLALAQLLEEQEGPEAAQ  302 (389)
T ss_pred             HHHC-------h--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCc-hHHHHHHHHHHHhCCHHHHH
Confidence            8751       2  2223456789999999999999999999988752        222 23478999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH--hcCChHHHHHHHHHHHHHH
Q 010063          436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLY--HLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       436 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~a~~~~  487 (519)
                      ..+++++..        .|+.......++..+.  ..|+..+|+..+++.++..
T Consensus       303 ~~l~~~l~~--------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~  348 (389)
T PRK11788        303 ALLREQLRR--------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ  348 (389)
T ss_pred             HHHHHHHHh--------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence            999999884        3444433222333222  2568999999999988643

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.93  E-value=3.5e-23  Score=179.71  Aligned_cols=328  Identities=16%  Similarity=0.108  Sum_probs=266.5

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010063          168 IALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS  247 (519)
Q Consensus       168 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  247 (519)
                      -|.-+++.|++...+.+|+.+++.-   .++-..+..+|..||+.|+..++|.+|+++...-+.+.+...  +....+.+
T Consensus        23 EGERLck~gdcraGv~ff~aA~qvG---TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg--dklGEAKs   97 (639)
T KOG1130|consen   23 EGERLCKMGDCRAGVDFFKAALQVG---TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG--DKLGEAKS   97 (639)
T ss_pred             HHHHHHhccchhhhHHHHHHHHHhc---chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc--chhccccc
Confidence            4667889999999999999999875   344456677899999999999999999999887777665542  23344677


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCC--------------------HHHHH
Q 010063          248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK--------------------AVDAE  307 (519)
Q Consensus       248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~  307 (519)
                      ..++|..+...|.|++|+.+..+-+.+.++..  +......+++++|.+|...|+                    ++.|.
T Consensus        98 sgNLGNtlKv~G~fdeA~~cc~rhLd~areLg--Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av  175 (639)
T KOG1130|consen   98 SGNLGNTLKVKGAFDEALTCCFRHLDFARELG--DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAV  175 (639)
T ss_pred             cccccchhhhhcccchHHHHHHHHhHHHHHHh--HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHH
Confidence            78999999999999999999999999988875  445567899999999998876                    35566


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcC
Q 010063          308 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG  387 (519)
Q Consensus       308 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  387 (519)
                      ++|..-+++.+...  +......++.+||..|+-.|+|+.|+..-+.-+.+.++-    .+....-.++.++|.++.-.|
T Consensus       176 ~fy~eNL~l~~~lg--Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef----GDrAaeRRA~sNlgN~hiflg  249 (639)
T KOG1130|consen  176 KFYMENLELSEKLG--DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF----GDRAAERRAHSNLGNCHIFLG  249 (639)
T ss_pred             HHHHHHHHHHHHhh--hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh----hhHHHHHHhhcccchhhhhhc
Confidence            67777777666552  233456789999999999999999999999999988873    344455678899999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Q 010063          388 RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL  467 (519)
Q Consensus       388 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  467 (519)
                      +++.|+++|+..+.+..++.  +....+...+.||..|.-..++++|+.|+.+-+.|.++.  .+......+++.||..+
T Consensus       250 ~fe~A~ehYK~tl~LAielg--~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL--~DriGe~RacwSLgna~  325 (639)
T KOG1130|consen  250 NFELAIEHYKLTLNLAIELG--NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL--EDRIGELRACWSLGNAF  325 (639)
T ss_pred             ccHhHHHHHHHHHHHHHHhc--chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHH
Confidence            99999999999999988874  445567788999999999999999999999999999887  34456678899999999


Q ss_pred             HhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhh
Q 010063          468 YHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLL  516 (519)
Q Consensus       468 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~  516 (519)
                      ...|..++|+.+.++.+++..++-++...    .....||...-..+|.
T Consensus       326 ~alg~h~kAl~fae~hl~~s~ev~D~sge----lTar~Nlsdl~~~lG~  370 (639)
T KOG1130|consen  326 NALGEHRKALYFAELHLRSSLEVNDTSGE----LTARDNLSDLILELGQ  370 (639)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHhCCcchh----hhhhhhhHHHHHHhCC
Confidence            99999999999999999999877443322    2334466655555553

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.92  E-value=2.6e-22  Score=174.35  Aligned_cols=331  Identities=15%  Similarity=0.145  Sum_probs=261.8

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCc
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKG-IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (519)
                      +-..+..+++.|++...+.+|+.|++.       +..+ .....+|..+|.+|+.+++|++|.++...=+.+.+.+++. 
T Consensus        20 LalEGERLck~gdcraGv~ff~aA~qv-------GTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdk-   91 (639)
T KOG1130|consen   20 LALEGERLCKMGDCRAGVDFFKAALQV-------GTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDK-   91 (639)
T ss_pred             HHHHHHHHHhccchhhhHHHHHHHHHh-------cchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcch-
Confidence            555778899999999999999999998       3333 3345578899999999999999999886655554444332 


Q ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCC-------------------
Q 010063          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR-------------------  260 (519)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------  260 (519)
                      ..-+.+--+||+.+...|.|++|+.+..+-+.+.++.  .+......+++++|.+|...|+                   
T Consensus        92 lGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL--gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~  169 (639)
T KOG1130|consen   92 LGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL--GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTS  169 (639)
T ss_pred             hccccccccccchhhhhcccchHHHHHHHHhHHHHHH--hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHH
Confidence            2334456789999999999999999999999998876  2345668899999999998875                   


Q ss_pred             -HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 010063          261 -AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK  339 (519)
Q Consensus       261 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  339 (519)
                       ++.|.++|..-+++.++..  +......++.+||..|+-.|+|+.|+...+.-+.+.++..  +....-.++.++|.++
T Consensus       170 al~~Av~fy~eNL~l~~~lg--Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG--DrAaeRRA~sNlgN~h  245 (639)
T KOG1130|consen  170 ALENAVKFYMENLELSEKLG--DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG--DRAAERRAHSNLGNCH  245 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHhh--hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh--hHHHHHHhhcccchhh
Confidence             3456666666666665543  3344567899999999999999999999999999988763  3344566899999999


Q ss_pred             HHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHH
Q 010063          340 CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL  419 (519)
Q Consensus       340 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  419 (519)
                      ...|+++.|+++|+..+.+..+.    .+...-+...+.||..|.-..++++|+.++.+-+.|.++..  +......+++
T Consensus       246 iflg~fe~A~ehYK~tl~LAiel----g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~--DriGe~Racw  319 (639)
T KOG1130|consen  246 IFLGNFELAIEHYKLTLNLAIEL----GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE--DRIGELRACW  319 (639)
T ss_pred             hhhcccHhHHHHHHHHHHHHHHh----cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHH
Confidence            99999999999999999988874    33444456678999999999999999999999999998873  4556678899


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCCh
Q 010063          420 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD  473 (519)
Q Consensus       420 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  473 (519)
                      .||..+...|..++|+.+.++.+++..++.++.  ....+..+|...-...|..
T Consensus       320 SLgna~~alg~h~kAl~fae~hl~~s~ev~D~s--gelTar~Nlsdl~~~lG~~  371 (639)
T KOG1130|consen  320 SLGNAFNALGEHRKALYFAELHLRSSLEVNDTS--GELTARDNLSDLILELGQE  371 (639)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcc--hhhhhhhhhHHHHHHhCCC
Confidence            999999999999999999999999988874332  2333445665555555543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.91  E-value=1.3e-21  Score=209.26  Aligned_cols=313  Identities=10%  Similarity=0.048  Sum_probs=239.1

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchH
Q 010063          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL  201 (519)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  201 (519)
                      +..+..+...|++++|+..|+++++.          .|..+.++..+|.++...|++++|+..|+++++...    +.+.
T Consensus       355 ~~~g~~~~~~g~~~eA~~~~~~Al~~----------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p----~~~~  420 (1157)
T PRK11447        355 IQQGDAALKANNLAQAERLYQQARQV----------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP----GNTN  420 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHH
Confidence            45567788999999999999999998          667778899999999999999999999999987642    1111


Q ss_pred             H---------------------------------------HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCH
Q 010063          202 L---------------------------------------DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI  242 (519)
Q Consensus       202 ~---------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  242 (519)
                      .                                       ...+..+|..+...|++++|+..|+++++..        |
T Consensus       421 a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--------P  492 (1157)
T PRK11447        421 AVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--------P  492 (1157)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------C
Confidence            0                                       1123346777888899999999999998762        3


Q ss_pred             HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH------
Q 010063          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI------  316 (519)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------  316 (519)
                      ....++..+|.+|...|++++|+..++++++.        .|.....+..++..+...|++++|+..++++...      
T Consensus       493 ~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--------~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~  564 (1157)
T PRK11447        493 GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--------KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNI  564 (1157)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhH
Confidence            33557789999999999999999999999875        3444555666677777777777777766543110      


Q ss_pred             ---------------H------------HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCc
Q 010063          317 ---------------Y------------TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD  369 (519)
Q Consensus       317 ---------------~------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  369 (519)
                                     .            ...+. .+|.....+..+|.++...|++++|+..|+++++.       .|++
T Consensus       565 ~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-------~P~~  636 (1157)
T PRK11447        565 QELAQRLQSDQVLETANRLRDSGKEAEAEALLR-QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-------EPGN  636 (1157)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC
Confidence                           0            00000 12334456788999999999999999999999987       3444


Q ss_pred             hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhc
Q 010063          370 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV  449 (519)
Q Consensus       370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  449 (519)
                         ..++..++.++...|++++|++.+++++..        .|....++..+|.++...|++++|..++++++...... 
T Consensus       637 ---~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~-  704 (1157)
T PRK11447        637 ---ADARLGLIEVDIAQGDLAAARAQLAKLPAT--------ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ-  704 (1157)
T ss_pred             ---HHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC-
Confidence               346689999999999999999999987653        34445677889999999999999999999998743111 


Q ss_pred             CCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010063          450 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  485 (519)
Q Consensus       450 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  485 (519)
                       +........+..+|.++...|++++|+.+|++++.
T Consensus       705 -~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        705 -PPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             -CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence             11112345667789999999999999999999985

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.90  E-value=1.3e-20  Score=180.82  Aligned_cols=252  Identities=18%  Similarity=0.162  Sum_probs=181.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (519)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (519)
                      |....++..+|.++.. ++...++..|..|+.+.......   .-...++++|..++..|++++|...|.+|+..+....
T Consensus       411 ~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~---ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~  486 (1018)
T KOG2002|consen  411 PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQ---IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA  486 (1018)
T ss_pred             cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCC---CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc
Confidence            3445677777777765 44555599999999888776533   4467899999999999999999999999999865443


Q ss_pred             CCCC--hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010063          322 GEND--GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  399 (519)
Q Consensus       322 ~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  399 (519)
                      ..+.  .......+|+|.++...++++.|.+.|...+..          +|.+..++..+|......++..+|...+..+
T Consensus       487 n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke----------hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~  556 (1018)
T KOG2002|consen  487 NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE----------HPGYIDAYLRLGCMARDKNNLYEASLLLKDA  556 (1018)
T ss_pred             CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH----------CchhHHHHHHhhHHHHhccCcHHHHHHHHHH
Confidence            2222  122446789999999999999999999998775          5556677777887777778888888888877


Q ss_pred             HHHHHHh------hC----------------------CCChhHHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHHHHH
Q 010063          400 LLITEKY------KG----------------------KEHPSFVTHLLNLAASYSRS-----KNFVEAERLLRICLDIMT  446 (519)
Q Consensus       400 l~~~~~~------~~----------------------~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~  446 (519)
                      +.+....      +|                      ......+.++..||.++.+.     .+.+++...+.+|++++.
T Consensus       557 l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~  636 (1018)
T KOG2002|consen  557 LNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYG  636 (1018)
T ss_pred             HhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHH
Confidence            6542111      11                      00011234566677766542     334566667777777766


Q ss_pred             HhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063          447 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYK  518 (519)
Q Consensus       447 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~k  518 (519)
                      +++. .+|..+.+-+.+|.++...|++.+|...|.++.+...     +.+++     |.|||.||..+|+|.
T Consensus       637 kvL~-~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-----~~~dv-----~lNlah~~~e~~qy~  697 (1018)
T KOG2002|consen  637 KVLR-NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-----DFEDV-----WLNLAHCYVEQGQYR  697 (1018)
T ss_pred             HHHh-cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-----hCCce-----eeeHHHHHHHHHHHH
Confidence            6553 4577777888999999999999999999998887653     33445     789999999998885

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.90  E-value=1.6e-20  Score=179.43  Aligned_cols=277  Identities=18%  Similarity=0.141  Sum_probs=222.1

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCC
Q 010063          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS  241 (519)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  241 (519)
                      ....+..|..+...|++++|+..+++++...       |....++..+|.++...|++++|+..+++++...    ....
T Consensus        35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~  103 (389)
T PRK11788         35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTR  103 (389)
T ss_pred             ccHHHHHHHHHHhcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCH
Confidence            3445667888999999999999999998763       4445668899999999999999999999887621    1112


Q ss_pred             HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (519)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (519)
                      .....++..+|.+|...|++++|+..|+++++.        .+....++..++.++...|++++|+..++++++....  
T Consensus       104 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--  173 (389)
T PRK11788        104 EQRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD--  173 (389)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC--
Confidence            234567889999999999999999999999864        3445678899999999999999999999998874211  


Q ss_pred             CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010063          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  401 (519)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  401 (519)
                       +........+..+|.++...|++++|+.+++++++..       ++.   ...+..+|.++...|++++|++.+++++.
T Consensus       174 -~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~  242 (389)
T PRK11788        174 -SLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-------PQC---VRASILLGDLALAQGDYAAAIEALERVEE  242 (389)
T ss_pred             -cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-------cCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence             1111244467789999999999999999999998862       222   34567899999999999999999999886


Q ss_pred             HHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHH
Q 010063          402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  481 (519)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  481 (519)
                      ..       ......++..++.+|...|++++|...+++++..        +|+.. .+..++.++...|++++|...++
T Consensus       243 ~~-------p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--------~p~~~-~~~~la~~~~~~g~~~~A~~~l~  306 (389)
T PRK11788        243 QD-------PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--------YPGAD-LLLALAQLLEEQEGPEAAQALLR  306 (389)
T ss_pred             HC-------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCch-HHHHHHHHHHHhCCHHHHHHHHH
Confidence            41       1223456788999999999999999999998874        22222 34789999999999999999999


Q ss_pred             HHHHH
Q 010063          482 EALYI  486 (519)
Q Consensus       482 ~a~~~  486 (519)
                      ++++.
T Consensus       307 ~~l~~  311 (389)
T PRK11788        307 EQLRR  311 (389)
T ss_pred             HHHHh
Confidence            99875

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=8.8e-22  Score=181.86  Aligned_cols=295  Identities=15%  Similarity=0.114  Sum_probs=233.7

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHH
Q 010063          125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA  204 (519)
Q Consensus       125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  204 (519)
                      +......-+..+|+..|++.-..          ......++..+|.+|+.+++|++|+.+|+.+.+..       |....
T Consensus       326 ~~~~~s~y~~~~A~~~~~klp~h----------~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~-------p~rv~  388 (638)
T KOG1126|consen  326 GYRSLSQYNCREALNLFEKLPSH----------HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIE-------PYRVK  388 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHh----------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------ccccc
Confidence            33445556677888888872222          55666889999999999999999999999987664       32222


Q ss_pred             HHHHHHHHHHccccHHHHHHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063          205 ILLHMGSMYSTLENYEKSMLVYQR-VINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (519)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (519)
                      -.-....+++...+-- ++.++-+ .++        .++....+|..+|.||..+++++.|++.|++|+++        +
T Consensus       389 ~meiyST~LWHLq~~v-~Ls~Laq~Li~--------~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--------d  451 (638)
T KOG1126|consen  389 GMEIYSTTLWHLQDEV-ALSYLAQDLID--------TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--------D  451 (638)
T ss_pred             chhHHHHHHHHHHhhH-HHHHHHHHHHh--------hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------C
Confidence            2223334444443322 2222222 222        23445678889999999999999999999999997        6


Q ss_pred             hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010063          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (519)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (519)
                      |..+.+|..+|.-+.....+|.|..+|++|+.+        +|..-.+|+.+|.+|.++++++.|+-+|++|+++     
T Consensus       452 p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I-----  518 (638)
T KOG1126|consen  452 PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI-----  518 (638)
T ss_pred             CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcC-----
Confidence            778899999999999999999999999999985        5777789999999999999999999999999998     


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (519)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (519)
                        .|..   ..+...+|.++.+.|+.++|+.++++|+.+        +|...-..+..|.++...+++++|+..+++..+
T Consensus       519 --NP~n---svi~~~~g~~~~~~k~~d~AL~~~~~A~~l--------d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~  585 (638)
T KOG1126|consen  519 --NPSN---SVILCHIGRIQHQLKRKDKALQLYEKAIHL--------DPKNPLCKYHRASILFSLGRYVEALQELEELKE  585 (638)
T ss_pred             --Cccc---hhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--------CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence              2323   334577999999999999999999999875        344445677889999999999999999998877


Q ss_pred             HHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                      +        .|+...++..+|.+|.+.|+.+.|+..|--|.++-
T Consensus       586 ~--------vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld  621 (638)
T KOG1126|consen  586 L--------VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD  621 (638)
T ss_pred             h--------CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence            4        47778889999999999999999999999998754

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.89  E-value=5.6e-20  Score=176.49  Aligned_cols=326  Identities=18%  Similarity=0.207  Sum_probs=260.1

Q ss_pred             CChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHH
Q 010063          132 GNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGS  211 (519)
Q Consensus       132 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  211 (519)
                      ..+..++..+.++...          .+..+.++..++.-|+..|+|+.+..+...++...    ...+..+..++.+|.
T Consensus       250 ~s~~~~~~ll~~ay~~----------n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t----~~~~~~aes~Y~~gR  315 (1018)
T KOG2002|consen  250 DSYKKGVQLLQRAYKE----------NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT----ENKSIKAESFYQLGR  315 (1018)
T ss_pred             HHHHHHHHHHHHHHhh----------cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHH
Confidence            3466667777666665          67778899999999999999999999998887764    445677888999999


Q ss_pred             HHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 010063          212 MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLF  291 (519)
Q Consensus       212 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  291 (519)
                      +|..+|+|++|..+|.+++...     ++  ...-.+..+|..|...|+++.|...|++++..        .|....++.
T Consensus       316 s~Ha~Gd~ekA~~yY~~s~k~~-----~d--~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--------~p~~~etm~  380 (1018)
T KOG2002|consen  316 SYHAQGDFEKAFKYYMESLKAD-----ND--NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--------LPNNYETMK  380 (1018)
T ss_pred             HHHhhccHHHHHHHHHHHHccC-----CC--CccccccchhHHHHHhchHHHHHHHHHHHHHh--------CcchHHHHH
Confidence            9999999999999999998752     22  23566889999999999999999999999886        566678888


Q ss_pred             HHHHHHHhCC----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCC
Q 010063          292 SLGSLFIKEG----KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  367 (519)
Q Consensus       292 ~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  367 (519)
                      .||.+|...+    ..+.|..+..++++.        .|....+|..++.++....-+ .++.+|..|+.+.....  .+
T Consensus       381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--------~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~--~~  449 (1018)
T KOG2002|consen  381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQ--------TPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKG--KQ  449 (1018)
T ss_pred             HHHhHHHhhhhhhHHHHHHHHHHHHHHhc--------ccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcC--CC
Confidence            8999998876    456677777777663        367778999999998765555 45999999998887641  22


Q ss_pred             CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010063          368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH--PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (519)
Q Consensus       368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (519)
                      -+   ...++++|..++..|++.+|...+.+|+.........+.  .......+++|.++...++++.|.+.|...+.  
T Consensus       450 ip---~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--  524 (1018)
T KOG2002|consen  450 IP---PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--  524 (1018)
T ss_pred             CC---HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--
Confidence            22   346699999999999999999999999998553322222  12245689999999999999999999999987  


Q ss_pred             HHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063          446 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYK  518 (519)
Q Consensus       446 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~k  518 (519)
                            .||..+.++..+|.+....++..+|..+++.++.+.     ..+|.+     +..+|..|....+++
T Consensus       525 ------ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-----~~np~a-----rsl~G~~~l~k~~~~  581 (1018)
T KOG2002|consen  525 ------EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-----SSNPNA-----RSLLGNLHLKKSEWK  581 (1018)
T ss_pred             ------HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-----cCCcHH-----HHHHHHHHHhhhhhc
Confidence                  589999999999988888999999999999999854     445544     556787777766654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.89  E-value=5.8e-20  Score=187.96  Aligned_cols=339  Identities=11%  Similarity=0.004  Sum_probs=249.1

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      +...+..+...|++++|+..++++++.          .|..+.++..++.++...|++++|+..+++++...       |
T Consensus        52 ~~~lA~~~~~~g~~~~A~~~~~~al~~----------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-------P  114 (765)
T PRK10049         52 YAAVAVAYRNLKQWQNSLTLWQKALSL----------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-------P  114 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------C
Confidence            666788899999999999999999988          67777788899999999999999999999988764       3


Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHH----------
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHR----------  270 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~----------  270 (519)
                      .... +..+|.++...|++++|+..++++++..        |....++..++.++...|..++|+..+++          
T Consensus       115 ~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--------P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~  185 (765)
T PRK10049        115 DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--------PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRD  185 (765)
T ss_pred             CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHH
Confidence            3344 7789999999999999999999999862        22344555678888777887777755552          


Q ss_pred             -----------------------------HHHHHHHhcC--CCC----hhhHHHHHH-HHHHHHhCCCHHHHHHHHHHHH
Q 010063          271 -----------------------------VITILELNRG--TES----ADLVLPLFS-LGSLFIKEGKAVDAESVFSRIL  314 (519)
Q Consensus       271 -----------------------------al~~~~~~~~--~~~----~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al  314 (519)
                                                   +++.++....  +..    +....+... ++. +...|++++|+..|++++
T Consensus       186 l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~-Ll~~g~~~eA~~~~~~ll  264 (765)
T PRK10049        186 LEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA-LLARDRYKDVISEYQRLK  264 (765)
T ss_pred             HHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH-HHHhhhHHHHHHHHHHhh
Confidence                                         2221111110  111    222223332 443 457799999999999987


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHHHHHHHcCChHHHH
Q 010063          315 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD-SIMENMRIDLAELLHIVGRGQEGR  393 (519)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~  393 (519)
                      +.     ++..|..+..  .+|.+|...|++++|+..|+++++.       .+.. .........++.++...|++++|+
T Consensus       265 ~~-----~~~~P~~a~~--~la~~yl~~g~~e~A~~~l~~~l~~-------~p~~~~~~~~~~~~L~~a~~~~g~~~eA~  330 (765)
T PRK10049        265 AE-----GQIIPPWAQR--WVASAYLKLHQPEKAQSILTELFYH-------PETIADLSDEELADLFYSLLESENYPGAL  330 (765)
T ss_pred             cc-----CCCCCHHHHH--HHHHHHHhcCCcHHHHHHHHHHhhc-------CCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence            64     1223444433  3688999999999999999998764       1222 111234466788889999999999


Q ss_pred             HHHHHHHHHHHHh---h--CCCCh--hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHH
Q 010063          394 ELLEECLLITEKY---K--GKEHP--SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT  466 (519)
Q Consensus       394 ~~~~~al~~~~~~---~--~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  466 (519)
                      ..++++.......   .  ....|  ....++..+|.++...|++++|++.+++++..        .|.....+..+|.+
T Consensus       331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~P~n~~l~~~lA~l  402 (765)
T PRK10049        331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--------APGNQGLRIDYASV  402 (765)
T ss_pred             HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence            9999887642110   0  00112  23467788999999999999999999999873        45566788999999


Q ss_pred             HHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063          467 LYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYK  518 (519)
Q Consensus       467 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~k  518 (519)
                      +...|++++|+..+++++++.     |+++.     .+..+|.++..+|+++
T Consensus       403 ~~~~g~~~~A~~~l~~al~l~-----Pd~~~-----l~~~~a~~al~~~~~~  444 (765)
T PRK10049        403 LQARGWPRAAENELKKAEVLE-----PRNIN-----LEVEQAWTALDLQEWR  444 (765)
T ss_pred             HHhcCCHHHHHHHHHHHHhhC-----CCChH-----HHHHHHHHHHHhCCHH
Confidence            999999999999999999864     44443     3677888888888764

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.7e-20  Score=166.72  Aligned_cols=329  Identities=14%  Similarity=0.096  Sum_probs=203.1

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhc
Q 010063          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (519)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (519)
                      .....+-+.|..+++.|+|++||++|.+|+++          .|..+..+.+++-+|...|+|++.++...+++++.   
T Consensus       113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l----------~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~---  179 (606)
T KOG0547|consen  113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIEL----------CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN---  179 (606)
T ss_pred             HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhc----------CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC---
Confidence            44555778899999999999999999999998          66668889999999999999999999999998876   


Q ss_pred             CCCchHHHHHHHHHHHHHHccccHHHHHHHH------------------HHHHHH-----HHHhcC--------------
Q 010063          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVY------------------QRVINV-----LESRYG--------------  238 (519)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~------------------~~al~~-----~~~~~~--------------  238 (519)
                          |....+++..+..+...|++++|+.-.                  ++.+..     ..+.++              
T Consensus       180 ----P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~  255 (606)
T KOG0547|consen  180 ----PDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIA  255 (606)
T ss_pred             ----cHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHH
Confidence                888888999999999999998886532                  122211     000000              


Q ss_pred             --------------------------------------------------------------CCC--HHHHHHHHHHHHH
Q 010063          239 --------------------------------------------------------------KTS--ILLVTSLLGMAKV  254 (519)
Q Consensus       239 --------------------------------------------------------------~~~--~~~~~~~~~la~~  254 (519)
                                                                                    .+.  ...+.++...|..
T Consensus       256 syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF  335 (606)
T KOG0547|consen  256 SYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF  335 (606)
T ss_pred             HHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence                                                                          000  1235566667777


Q ss_pred             HhhcCCHHHHHHHHHHHHHHHHHhcC--------------------------CCChhhHHHHHHHHHHHHhCCCHHHHHH
Q 010063          255 LGSIGRAKKAVEIYHRVITILELNRG--------------------------TESADLVLPLFSLGSLFIKEGKAVDAES  308 (519)
Q Consensus       255 ~~~~g~~~~A~~~~~~al~~~~~~~~--------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~  308 (519)
                      ++-.|++..|...+..++.+......                          .-+|....+|+..|.++.-.+++++|+.
T Consensus       336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a  415 (606)
T KOG0547|consen  336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA  415 (606)
T ss_pred             hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence            78888888888888888775221100                          0123333444445555555555555555


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCC
Q 010063          309 VFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR  388 (519)
Q Consensus       309 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  388 (519)
                      -|++++.+        +|..+.++..++...+++++++++...|+++...+..       .   ..++...|.++..+++
T Consensus       416 DF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-------~---~Evy~~fAeiLtDqqq  477 (606)
T KOG0547|consen  416 DFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-------C---PEVYNLFAEILTDQQQ  477 (606)
T ss_pred             HHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------C---chHHHHHHHHHhhHHh
Confidence            55555443        3444445555555555555555555555555444221       1   2233445555555555


Q ss_pred             hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Q 010063          389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS-RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL  467 (519)
Q Consensus       389 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  467 (519)
                      +++|++.|+.++.+.....+- +. .+..+...|.+.. -.+++..|+.++++|+++        +|.--.++..||.+.
T Consensus       478 Fd~A~k~YD~ai~LE~~~~~~-~v-~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpkce~A~~tlaq~~  547 (606)
T KOG0547|consen  478 FDKAVKQYDKAIELEPREHLI-IV-NAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPKCEQAYETLAQFE  547 (606)
T ss_pred             HHHHHHHHHHHHhhccccccc-cc-cchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------CchHHHHHHHHHHHH
Confidence            555555555555543221110 00 0111111122111 124555555555555552        455566788999999


Q ss_pred             HhcCChHHHHHHHHHHHHHHHH
Q 010063          468 YHLNRDKEAEKLVLEALYIREI  489 (519)
Q Consensus       468 ~~~g~~~~A~~~~~~a~~~~~~  489 (519)
                      .++|+.++|+++|+++..+.+.
T Consensus       548 lQ~~~i~eAielFEksa~lArt  569 (606)
T KOG0547|consen  548 LQRGKIDEAIELFEKSAQLART  569 (606)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHh
Confidence            9999999999999999988764

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.87  E-value=9.2e-19  Score=179.18  Aligned_cols=340  Identities=11%  Similarity=0.004  Sum_probs=248.0

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      +-+-.....-.|+.++|+..+.++...          .+..+.++..+|.++...|++++|...+++++...       |
T Consensus        18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~----------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-------P   80 (765)
T PRK10049         18 IADWLQIALWAGQDAEVITVYNRYRVH----------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-------P   80 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------C
Confidence            445556678899999999999888765          56667789999999999999999999999998774       3


Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (519)
                      ....++..++.++...|++++|+..++++++..        |.... +..+|.++...|++++|+..++++++.      
T Consensus        81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~------  145 (765)
T PRK10049         81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSGA--------PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR------  145 (765)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence            333456789999999999999999999998762        22244 778999999999999999999999997      


Q ss_pred             CCChhhHHHHHHHHHHHHhCCCHHHHHHHHHH---------------------------------------HHHHHHHhc
Q 010063          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSR---------------------------------------ILKIYTKVY  321 (519)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~---------------------------------------al~~~~~~~  321 (519)
                        .|....++..++.++...|..++|+..+++                                       +++.++...
T Consensus       146 --~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll  223 (765)
T PRK10049        146 --APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE  223 (765)
T ss_pred             --CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Confidence              455667777888888888888877765552                                       222222211


Q ss_pred             C--CCC----hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHH
Q 010063          322 G--END----GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL  395 (519)
Q Consensus       322 ~--~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  395 (519)
                      .  +.+    +....+.......+...|++++|+..|+++++.       ++..|....  ..+|.+|...|++++|+..
T Consensus       224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~-------~~~~P~~a~--~~la~~yl~~g~~e~A~~~  294 (765)
T PRK10049        224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE-------GQIIPPWAQ--RWVASAYLKLHQPEKAQSI  294 (765)
T ss_pred             hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-------CCCCCHHHH--HHHHHHHHhcCCcHHHHHH
Confidence            0  111    222233333223346779999999999997765       222232222  3368899999999999999


Q ss_pred             HHHHHHHHHHhhCCCC-hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh---c--CCCCc--chhHHHHHHHHHH
Q 010063          396 LEECLLITEKYKGKEH-PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT---V--GPDDQ--SISFPMLHLGITL  467 (519)
Q Consensus       396 ~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~--~~~~~--~~~~~~~~la~~~  467 (519)
                      |++++...     +.. +........++.++...|++++|+.+++++.......   .  ...+|  ....++..++.++
T Consensus       295 l~~~l~~~-----p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l  369 (765)
T PRK10049        295 LTELFYHP-----ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVA  369 (765)
T ss_pred             HHHHhhcC-----CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHH
Confidence            99987531     111 1113456677888899999999999999988742100   0  00112  2345677899999


Q ss_pred             HhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063          468 YHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYK  518 (519)
Q Consensus       468 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~k  518 (519)
                      ...|++++|+..+++++...     |+++     ..+..+|.++...|+++
T Consensus       370 ~~~g~~~eA~~~l~~al~~~-----P~n~-----~l~~~lA~l~~~~g~~~  410 (765)
T PRK10049        370 KYSNDLPQAEMRARELAYNA-----PGNQ-----GLRIDYASVLQARGWPR  410 (765)
T ss_pred             HHcCCHHHHHHHHHHHHHhC-----CCCH-----HHHHHHHHHHHhcCCHH
Confidence            99999999999999998754     4443     44889999999988764

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=1.7e-20  Score=173.39  Aligned_cols=292  Identities=18%  Similarity=0.171  Sum_probs=225.9

Q ss_pred             HHHHHHHHHHHHHHhc--CChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063          160 EEVAILDIIALGYVYI--GDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (519)
Q Consensus       160 ~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (519)
                      .....+..+|..|...  -+..+|+..|++.       ...++....++..+|..|+.+++|++|..+|+.+-+..    
T Consensus       315 ~l~~llr~~~~~~~~~s~y~~~~A~~~~~kl-------p~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~----  383 (638)
T KOG1126|consen  315 ELMELLRGLGEGYRSLSQYNCREALNLFEKL-------PSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIE----  383 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----
Confidence            4455667777777554  3456777777662       23335556788999999999999999999999876542    


Q ss_pred             CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (519)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (519)
                          |..+...-....+++...+--+--.+.+..++        .+|....+|..+|.+|..+++++.|++.|++|+.+ 
T Consensus       384 ----p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~--------~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl-  450 (638)
T KOG1126|consen  384 ----PYRVKGMEIYSTTLWHLQDEVALSYLAQDLID--------TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL-  450 (638)
T ss_pred             ----cccccchhHHHHHHHHHHhhHHHHHHHHHHHh--------hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-
Confidence                22222222334444444332222222222222        35667789999999999999999999999999985 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010063          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  397 (519)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (519)
                             +|..+.+|..+|.=+.....+|.|..+|++|+...          +.-..+|+.+|.+|.++++++.|.-.|+
T Consensus       451 -------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~----------~rhYnAwYGlG~vy~Kqek~e~Ae~~fq  513 (638)
T KOG1126|consen  451 -------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD----------PRHYNAWYGLGTVYLKQEKLEFAEFHFQ  513 (638)
T ss_pred             -------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC----------chhhHHHHhhhhheeccchhhHHHHHHH
Confidence                   67788899999999999999999999999999872          2235788999999999999999999999


Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHH
Q 010063          398 ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE  477 (519)
Q Consensus       398 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  477 (519)
                      +|+++        .|........+|.++.+.|+.++|+.++++|+.+        +|...-..+..|.+++..+++++|+
T Consensus       514 kA~~I--------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--------d~kn~l~~~~~~~il~~~~~~~eal  577 (638)
T KOG1126|consen  514 KAVEI--------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--------DPKNPLCKYHRASILFSLGRYVEAL  577 (638)
T ss_pred             hhhcC--------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--------CCCCchhHHHHHHHHHhhcchHHHH
Confidence            99985        5667778889999999999999999999999984        3444556789999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063          478 KLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYK  518 (519)
Q Consensus       478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~k  518 (519)
                      ..+++..++.     ++.     +..+..||.+|..+|+.+
T Consensus       578 ~~LEeLk~~v-----P~e-----s~v~~llgki~k~~~~~~  608 (638)
T KOG1126|consen  578 QELEELKELV-----PQE-----SSVFALLGKIYKRLGNTD  608 (638)
T ss_pred             HHHHHHHHhC-----cch-----HHHHHHHHHHHHHHccch
Confidence            9999988765     222     345889999999999865

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.87  E-value=7.8e-19  Score=179.81  Aligned_cols=304  Identities=10%  Similarity=0.008  Sum_probs=231.5

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCC---hHHHHH------------
Q 010063          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGD---LKFVQS------------  183 (519)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~------------  183 (519)
                      ..+...+......|++++|..+++++...       ..+..-.......++.+|...+.   ..++..            
T Consensus       377 ~~l~q~~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  449 (987)
T PRK09782        377 TRLDQLTWQLMQNGQSREAADLLLQRYPF-------QGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQ  449 (987)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHhcCC-------CcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHH
Confidence            33556667779999999999999998864       11011122234467777766655   333322            


Q ss_pred             ----------HHHHHHhhhhhcCCCchH--HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010063          184 ----------LLDMMSGIVDSLKDDEPL--LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGM  251 (519)
Q Consensus       184 ----------~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  251 (519)
                                .++.+....    +..|.  ...+++++|.++.. |++.+|+..+.+++...     ++.    .....+
T Consensus       450 ~~~~~~~~~~~~~~~~~al----~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-----Pd~----~~~L~l  515 (987)
T PRK09782        450 WQSQLPGIADNCPAIVRLL----GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-----PDA----WQHRAV  515 (987)
T ss_pred             HHhhhhhhhhhHHHHHHhc----ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-----Cch----HHHHHH
Confidence                      222222222    23234  56679999999987 89999999999988653     221    235567


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 010063          252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA  331 (519)
Q Consensus       252 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  331 (519)
                      |.++...|++++|+..+++++..        .+. ...+..+|.++...|++++|+.+++++++.        .|.....
T Consensus       516 A~al~~~Gr~eeAi~~~rka~~~--------~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l  578 (987)
T PRK09782        516 AYQAYQVEDYATALAAWQKISLH--------DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNAL  578 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHhcc--------CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHH
Confidence            78888999999999999987543        111 234678899999999999999999999874        2444445


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC
Q 010063          332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH  411 (519)
Q Consensus       332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  411 (519)
                      ...++......|++++|+..++++++.       .|+    ...+.++|.++.+.|++++|+..+++++.+        .
T Consensus       579 ~~~La~~l~~~Gr~~eAl~~~~~AL~l-------~P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--------~  639 (987)
T PRK09782        579 YWWLHAQRYIPGQPELALNDLTRSLNI-------APS----ANAYVARATIYRQRHNVPAAVSDLRAALEL--------E  639 (987)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHh-------CCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------C
Confidence            556666677789999999999999987       332    356789999999999999999999999985        4


Q ss_pred             hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          412 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       412 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                      |....++.++|.++...|++++|+..|++++++        +|....++.++|.++...|++++|+.++++++++.
T Consensus       640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~  707 (987)
T PRK09782        640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI  707 (987)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            666688999999999999999999999999984        46667889999999999999999999999999865

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.85  E-value=8e-19  Score=179.72  Aligned_cols=269  Identities=15%  Similarity=0.027  Sum_probs=220.3

Q ss_pred             ChH--HHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH
Q 010063          158 GIE--EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLES  235 (519)
Q Consensus       158 ~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  235 (519)
                      .|.  .+.++..+|.++.. |++++|+..+.++....    ++   .. ....+|..+...|++++|+..++++...   
T Consensus       471 ~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~----Pd---~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~---  538 (987)
T PRK09782        471 MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ----PD---AW-QHRAVAYQAYQVEDYATALAAWQKISLH---  538 (987)
T ss_pred             CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC----Cc---hH-HHHHHHHHHHHCCCHHHHHHHHHHHhcc---
Confidence            455  78899999999987 89999999998887654    22   11 2556777778999999999999986442   


Q ss_pred             hcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010063          236 RYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK  315 (519)
Q Consensus       236 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  315 (519)
                        .+.    ...+..+|.++...|++++|+.+++++++.        .|.....+..++......|++++|+..++++++
T Consensus       539 --~p~----~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~  604 (987)
T PRK09782        539 --DMS----NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLN  604 (987)
T ss_pred             --CCC----cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence              112    123568899999999999999999999875        244445555667777778999999999999998


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHH
Q 010063          316 IYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL  395 (519)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  395 (519)
                      +        .|. ...+.++|.++.+.|++++|+..+++++..       .|+++   .++.++|.++...|++++|+..
T Consensus       605 l--------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-------~Pd~~---~a~~nLG~aL~~~G~~eeAi~~  665 (987)
T PRK09782        605 I--------APS-ANAYVARATIYRQRHNVPAAVSDLRAALEL-------EPNNS---NYQAALGYALWDSGDIAQSREM  665 (987)
T ss_pred             h--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCCH---HHHHHHHHHHHHCCCHHHHHHH
Confidence            5        344 668899999999999999999999999987       34443   4678999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHH
Q 010063          396 LEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE  475 (519)
Q Consensus       396 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  475 (519)
                      +++++++        .|....++.++|.++...|++++|+..|++++++        .|+...+....|.+.....+++.
T Consensus       666 l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--------~P~~a~i~~~~g~~~~~~~~~~~  729 (987)
T PRK09782        666 LERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--------IDNQALITPLTPEQNQQRFNFRR  729 (987)
T ss_pred             HHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCchhhhhhhHHHHHHHHHHH
Confidence            9999985        4566788999999999999999999999999984        46667777788888888888888


Q ss_pred             HHHHHHHHHHHH
Q 010063          476 AEKLVLEALYIR  487 (519)
Q Consensus       476 A~~~~~~a~~~~  487 (519)
                      |.+.+.++..+.
T Consensus       730 a~~~~~r~~~~~  741 (987)
T PRK09782        730 LHEEVGRRWTFS  741 (987)
T ss_pred             HHHHHHHHhhcC
Confidence            888888876643

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=2.3e-18  Score=152.33  Aligned_cols=278  Identities=17%  Similarity=0.136  Sum_probs=219.1

Q ss_pred             ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (519)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (519)
                      -+.....-...|.+.....|+++|+..|+...+..       |....-+....++++-..+-.+---+.+.+..+     
T Consensus       258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-------PYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i-----  325 (559)
T KOG1155|consen  258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-------PYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI-----  325 (559)
T ss_pred             CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-------CCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh-----
Confidence            34445556677888899999999999998876532       322222334444544444332222222333332     


Q ss_pred             CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (519)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (519)
                         +.....+...+|+.|...++.++|+.+|++|+++        +|....++..+|.-|.++.+...|+..|++|+++ 
T Consensus       326 ---dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-  393 (559)
T KOG1155|consen  326 ---DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-  393 (559)
T ss_pred             ---ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-
Confidence               1222445667899999999999999999999998        6778899999999999999999999999999997 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010063          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  397 (519)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (519)
                             .|..-.+|+.||+.|.-++-+.=|+-+|++|+..       .|.++.   ++..||.||.+.++.++|+.+|.
T Consensus       394 -------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-------kPnDsR---lw~aLG~CY~kl~~~~eAiKCyk  456 (559)
T KOG1155|consen  394 -------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-------KPNDSR---LWVALGECYEKLNRLEEAIKCYK  456 (559)
T ss_pred             -------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-------CCCchH---HHHHHHHHHHHhccHHHHHHHHH
Confidence                   4667789999999999999999999999999987       455544   45779999999999999999999


Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHH
Q 010063          398 ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE  477 (519)
Q Consensus       398 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  477 (519)
                      +++....        ....++..||.+|.+.++..+|..+|++.++.. ...|...+.+..+...|+..+.+.+++++|.
T Consensus       457 rai~~~d--------te~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As  527 (559)
T KOG1155|consen  457 RAILLGD--------TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEAS  527 (559)
T ss_pred             HHHhccc--------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence            9987531        134688999999999999999999999999976 3345667778888888999999999999999


Q ss_pred             HHHHHHHH
Q 010063          478 KLVLEALY  485 (519)
Q Consensus       478 ~~~~~a~~  485 (519)
                      .+..+++.
T Consensus       528 ~Ya~~~~~  535 (559)
T KOG1155|consen  528 YYATLVLK  535 (559)
T ss_pred             HHHHHHhc
Confidence            98887765

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=1.1e-18  Score=158.16  Aligned_cols=279  Identities=16%  Similarity=0.194  Sum_probs=229.0

Q ss_pred             hHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH-HHHHHHHhcCChHHHHHHHHHHHhh
Q 010063          113 DFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILD-IIALGYVYIGDLKFVQSLLDMMSGI  191 (519)
Q Consensus       113 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~  191 (519)
                      ......+.+...+..++..+++.+..+..+..++.          .|-+..++- .+| ++...|+..+-..+-.+..  
T Consensus       239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~----------dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV--  305 (611)
T KOG1173|consen  239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEK----------DPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLV--  305 (611)
T ss_pred             hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh----------CCCCcchHHHHHH-HHHHhcccchHHHHHHHHH--
Confidence            33455666888999999999999999999999887          444444443 444 8888887665444333333  


Q ss_pred             hhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010063          192 VDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV  271 (519)
Q Consensus       192 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  271 (519)
                           +..|..+..|+.+|..|...|++.+|.++|.++..+        ++..+.+|...|..+...|+.++|+..|..|
T Consensus       306 -----~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tA  372 (611)
T KOG1173|consen  306 -----DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTA  372 (611)
T ss_pred             -----HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHH
Confidence                 344777777999999999999999999999999776        3555778889999999999999999999999


Q ss_pred             HHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 010063          272 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVEL  351 (519)
Q Consensus       272 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  351 (519)
                      -++....        ......+|.-|..+++++-|..+|.+|+.++        |.....++.+|.+.+..+.|.+|..+
T Consensus       373 arl~~G~--------hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~  436 (611)
T KOG1173|consen  373 ARLMPGC--------HLPSLYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKY  436 (611)
T ss_pred             HHhccCC--------cchHHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHH
Confidence            9885432        2344568999999999999999999999974        55556788999999999999999999


Q ss_pred             HHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCH
Q 010063          352 YKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF  431 (519)
Q Consensus       352 ~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  431 (519)
                      |+.++...+..   .+..+.+..++.+||.++.+.+.+++|+.++++++..        .|..+.++..+|.+|..+|++
T Consensus       437 f~~~l~~ik~~---~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnl  505 (611)
T KOG1173|consen  437 FQKALEVIKSV---LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNL  505 (611)
T ss_pred             HHHHHHHhhhc---cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcCh
Confidence            99999777664   3444456677899999999999999999999999985        455567889999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 010063          432 VEAERLLRICLDI  444 (519)
Q Consensus       432 ~~A~~~~~~al~~  444 (519)
                      +.|+++|.+++.+
T Consensus       506 d~Aid~fhKaL~l  518 (611)
T KOG1173|consen  506 DKAIDHFHKALAL  518 (611)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999985

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=2.5e-18  Score=152.08  Aligned_cols=268  Identities=16%  Similarity=0.168  Sum_probs=214.4

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHH
Q 010063          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD  203 (519)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  203 (519)
                      .|...+...|+++|+..|+.....          +|-...-+....++++...+-.+-.-+.+.+..+.       ....
T Consensus       268 ~A~~~y~~rDfD~a~s~Feei~kn----------DPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~id-------KyR~  330 (559)
T KOG1155|consen  268 IAAASYNQRDFDQAESVFEEIRKN----------DPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNID-------KYRP  330 (559)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHhc----------CCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhc-------cCCc
Confidence            345667888999999999987765          44444444444555555444333222223333332       1122


Q ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (519)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (519)
                      .....+|+.|.-.++.++|+.+|++|+++        +|....++..+|.=|..+.+...|++.|++|+++        .
T Consensus       331 ETCCiIaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--------~  394 (559)
T KOG1155|consen  331 ETCCIIANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--------N  394 (559)
T ss_pred             cceeeehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--------C
Confidence            23667899999999999999999999997        3566888999999999999999999999999998        5


Q ss_pred             hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010063          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (519)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (519)
                      |....+|+.||+.|.-++-+.=|+-+|++|...        .|.....|..||.+|.+.++.++|+.+|.+++....   
T Consensus       395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d---  463 (559)
T KOG1155|consen  395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD---  463 (559)
T ss_pred             chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc---
Confidence            667899999999999999999999999999985        466667889999999999999999999999998622   


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (519)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (519)
                           .  -..++..||.+|.+.++.++|..+|++.++.. ...|...+.+..+..-|+..+.+.+++++|..+..+++.
T Consensus       464 -----t--e~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~  535 (559)
T KOG1155|consen  464 -----T--EGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK  535 (559)
T ss_pred             -----c--chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence                 1  14567899999999999999999999999976 334556777788888899999999999999998887766

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.83  E-value=2.6e-17  Score=157.41  Aligned_cols=322  Identities=14%  Similarity=0.121  Sum_probs=230.0

Q ss_pred             hHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhh
Q 010063          113 DFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV  192 (519)
Q Consensus       113 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  192 (519)
                      ...++++.++..|..++..|++++|..++.+++..          .|..+.++..+|.+|..+|+.+++....-.|..+.
T Consensus       134 ~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq----------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~  203 (895)
T KOG2076|consen  134 KLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQ----------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN  203 (895)
T ss_pred             ccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence            34467888999999999999999999999999988          88899999999999999999999998887766554


Q ss_pred             hhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010063          193 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI  272 (519)
Q Consensus       193 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  272 (519)
                          +.++   ..|..++....++|++.+|.-+|.+|++..        |.........+.+|.+.|+...|...|.+++
T Consensus       204 ----p~d~---e~W~~ladls~~~~~i~qA~~cy~rAI~~~--------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~  268 (895)
T KOG2076|consen  204 ----PKDY---ELWKRLADLSEQLGNINQARYCYSRAIQAN--------PSNWELIYERSSLYQKTGDLKRAMETFLQLL  268 (895)
T ss_pred             ----CCCh---HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--------CcchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence                3333   448899999999999999999999999862        3346677888999999999999999999999


Q ss_pred             HHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 010063          273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY  352 (519)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  352 (519)
                      .....   .+...........+..+...++-+.|.+.++.++.....      ......++.++.++.....++.|....
T Consensus       269 ~~~p~---~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~------~~~~ed~ni~ael~l~~~q~d~~~~~i  339 (895)
T KOG2076|consen  269 QLDPP---VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD------EASLEDLNILAELFLKNKQSDKALMKI  339 (895)
T ss_pred             hhCCc---hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc------cccccHHHHHHHHHHHhHHHHHhhHHH
Confidence            87320   011222334455677888888889999999998883322      222334566788888888888888776


Q ss_pred             HHHHH----------------------HHHhhccC--------------------------------CCCchHHHHHHHH
Q 010063          353 KKALR----------------------VIKDSNYM--------------------------------SLDDSIMENMRID  378 (519)
Q Consensus       353 ~~al~----------------------~~~~~~~~--------------------------------~~~~~~~~~~~~~  378 (519)
                      .....                      ........                                ..........+..
T Consensus       340 ~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d  419 (895)
T KOG2076|consen  340 VDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLD  419 (895)
T ss_pred             HHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHH
Confidence            65443                      00000000                                0001222344566


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhH
Q 010063          379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF  458 (519)
Q Consensus       379 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  458 (519)
                      ++.+|...|++.+|+.++......       ........|..+|.||..+|.+++|++.|++++..        .|+..+
T Consensus       420 ~a~al~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~D  484 (895)
T KOG2076|consen  420 LADALTNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNLD  484 (895)
T ss_pred             HHHHHHhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCchh
Confidence            777777777777777777665431       12223556777777777777777777777777762        355566


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHH
Q 010063          459 PMLHLGITLYHLNRDKEAEKLVLEA  483 (519)
Q Consensus       459 ~~~~la~~~~~~g~~~~A~~~~~~a  483 (519)
                      +...|+.++..+|++++|.+.+.+.
T Consensus       485 ~Ri~Lasl~~~~g~~EkalEtL~~~  509 (895)
T KOG2076|consen  485 ARITLASLYQQLGNHEKALETLEQI  509 (895)
T ss_pred             hhhhHHHHHHhcCCHHHHHHHHhcc
Confidence            6677777777777777665555443

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.82  E-value=2.4e-16  Score=162.93  Aligned_cols=305  Identities=13%  Similarity=0.056  Sum_probs=178.7

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHH
Q 010063          123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL  202 (519)
Q Consensus       123 ~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  202 (519)
                      .....+...|++++|..+++++.+.       +  ......++..+...|...|+.++|.++++++....     -.|+.
T Consensus       442 ~LL~a~~k~g~~e~A~~lf~~M~~~-------G--l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-----v~Pdv  507 (1060)
T PLN03218        442 MLMSVCASSQDIDGALRVLRLVQEA-------G--LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-----VEANV  507 (1060)
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHc-------C--CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-----CCCCH
Confidence            3445667778888888888776653       1  22335567777788888888888888887765431     11332


Q ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (519)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (519)
                       ..|..+...|.+.|++++|+..|.++....   ..++    ..++..+...|...|++++|.+++.++......    -
T Consensus       508 -vTynaLI~gy~k~G~~eeAl~lf~~M~~~G---v~PD----~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g----i  575 (1060)
T PLN03218        508 -HTFGALIDGCARAGQVAKAFGAYGIMRSKN---VKPD----RVVFNALISACGQSGAVDRAFDVLAEMKAETHP----I  575 (1060)
T ss_pred             -HHHHHHHHHHHHCcCHHHHHHHHHHHHHcC---CCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC----C
Confidence             237777778888888888888877664421   1122    446677777777777777777777776542100    0


Q ss_pred             ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (519)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (519)
                      .| ...+++.+...|.+.|++++|.++|+++.+.       +.+....+|+.+...|.+.|++++|..+|+++.+.    
T Consensus       576 ~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~-------gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~----  643 (1060)
T PLN03218        576 DP-DHITVGALMKACANAGQVDRAKEVYQMIHEY-------NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK----  643 (1060)
T ss_pred             CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Confidence            12 2456666777777777777777777766542       11223345666666777777777777776665543    


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 010063          363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  442 (519)
Q Consensus       363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (519)
                       ...++    ..++..+...+.+.|++++|.++++++.+.       .......++..+...|.+.|++++|.++|+++.
T Consensus       644 -Gv~PD----~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-------G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~  711 (1060)
T PLN03218        644 -GVKPD----EVFFSALVDVAGHAGDLDKAFEILQDARKQ-------GIKLGTVSYSSLMGACSNAKNWKKALELYEDIK  711 (1060)
T ss_pred             -CCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence             11121    124455666666666666666666655431       111122355556666666666666666665544


Q ss_pred             HHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010063          443 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL  484 (519)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  484 (519)
                      ..      .-.|+ ..+|..+...|.+.|++++|.++|++..
T Consensus       712 ~~------g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~  746 (1060)
T PLN03218        712 SI------KLRPT-VSTMNALITALCEGNQLPKALEVLSEMK  746 (1060)
T ss_pred             Hc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            31      11122 2345555666666666666666665543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.82  E-value=3e-16  Score=166.47  Aligned_cols=435  Identities=13%  Similarity=0.064  Sum_probs=294.8

Q ss_pred             ccccccccccccccchhhHHHHhhhcccccCCCCCcchhhhhhhccCCC----CchhhhhhhhhhhhhhccccCcchHHH
Q 010063           41 LQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFS----APNDFARSKTLHDHSSNLWDGMNDFER  116 (519)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~  116 (519)
                      +...+...+.|+..++.+-++....+.+..+..+...+.........|.    ....|.+++.++..+....-...... 
T Consensus       260 ~~~l~~~~~~~l~~~a~~~~~~~~l~~~l~~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~-  338 (903)
T PRK04841        260 LDNVDLETRHFLLRCSVLRSMNDALIVRVTGEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQ-  338 (903)
T ss_pred             HhcCCHHHHHHHHHhcccccCCHHHHHHHcCCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCch-
Confidence            4566677777777777777777777777677666655555554332222    11236667777655542211111111 


Q ss_pred             HHHHHH-HHHHHHHHcCChhHHHHHHHHHH------HH----------------HHHHHhcCC--CChHHHHHHHHHHHH
Q 010063          117 QLLELF-NEVKSMIMMGNKNDAIDLLQANY------EA----------------VKEQINAGN--KGIEEVAILDIIALG  171 (519)
Q Consensus       117 ~~~~l~-~~~~~~~~~g~~~~A~~~~~~al------~~----------------~~~~~~~~~--~~~~~~~~~~~l~~~  171 (519)
                      ....+. ..+..+...|++.+|+..+..+-      ..                ........+  .....+......+.+
T Consensus       339 ~~~~lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~  418 (903)
T PRK04841        339 ELPELHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWL  418 (903)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHH
Confidence            122233 33455666777776666554320      00                000000000  000112234556777


Q ss_pred             HHhcCChHHHHHHHHHHHhhhhhcC-C-CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010063          172 YVYIGDLKFVQSLLDMMSGIVDSLK-D-DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLL  249 (519)
Q Consensus       172 ~~~~g~~~~A~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  249 (519)
                      +...|++++|...+..+.......+ . +......+...++.++...|++++|..++++++....   ..+......+..
T Consensus       419 ~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~a~~  495 (903)
T PRK04841        419 AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP---LTWYYSRIVATS  495 (903)
T ss_pred             HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CccHHHHHHHHH
Confidence            8889999999999988776543321 1 1122344455678899999999999999999987521   112223455677


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 010063          250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  329 (519)
Q Consensus       250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  329 (519)
                      .+|.++...|++++|...+++++.......  .......++.++|.++...|++++|..++++++.+.....+...+...
T Consensus       496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~  573 (903)
T PRK04841        496 VLGEVHHCKGELARALAMMQQTEQMARQHD--VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE  573 (903)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence            899999999999999999999999877643  223345677899999999999999999999999998876443334444


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC-
Q 010063          330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG-  408 (519)
Q Consensus       330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-  408 (519)
                      ..+..+|.++...|++++|...+++++......   +  +......+..++.++...|++++|...++++..+...... 
T Consensus       574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~---~--~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~  648 (903)
T PRK04841        574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY---Q--PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYH  648 (903)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc---C--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence            556788999999999999999999999987642   2  2233456678999999999999999999988775432100 


Q ss_pred             -------------------C----------------C-ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          409 -------------------K----------------E-HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD  452 (519)
Q Consensus       409 -------------------~----------------~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  452 (519)
                                         .                . ..........++.++...|++++|...+++++...+..  ..
T Consensus       649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~--g~  726 (903)
T PRK04841        649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL--RL  726 (903)
T ss_pred             HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--Cc
Confidence                               0                0 00011124578889999999999999999999986654  23


Q ss_pred             CcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010063          453 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  488 (519)
Q Consensus       453 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  488 (519)
                      ....+.++..+|.++...|+.++|...+.+++++..
T Consensus       727 ~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~  762 (903)
T PRK04841        727 MSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN  762 (903)
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence            346677888999999999999999999999999874

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.82  E-value=2.1e-18  Score=152.22  Aligned_cols=342  Identities=16%  Similarity=0.127  Sum_probs=196.1

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHH
Q 010063          125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA  204 (519)
Q Consensus       125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  204 (519)
                      +..+++..+|.+|+.+|+.+++.+..+     .......++.++|..+.+.|.|+.|+..|+.+.+..       |....
T Consensus       244 gni~~kkr~fskaikfyrmaldqvpsi-----nk~~rikil~nigvtfiq~gqy~dainsfdh~m~~~-------pn~~a  311 (840)
T KOG2003|consen  244 GNIHFKKREFSKAIKFYRMALDQVPSI-----NKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA-------PNFIA  311 (840)
T ss_pred             cceeeehhhHHHHHHHHHHHHhhcccc-----chhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC-------ccHHh
Confidence            344555667888888888888764332     245567788888888888999999988888766543       33332


Q ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHH---------------------------------------------------H
Q 010063          205 ILLHMGSMYSTLENYEKSMLVYQRVINV---------------------------------------------------L  233 (519)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~---------------------------------------------------~  233 (519)
                       -++|..+++..|+-++-.+.|++.+.+                                                   .
T Consensus       312 -~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kii  390 (840)
T KOG2003|consen  312 -ALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKII  390 (840)
T ss_pred             -hhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence             234445555555555555555554433                                                   0


Q ss_pred             HHhcCCC----------------C-HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH--------------HHh-cCC
Q 010063          234 ESRYGKT----------------S-ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL--------------ELN-RGT  281 (519)
Q Consensus       234 ~~~~~~~----------------~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------~~~-~~~  281 (519)
                      .....++                + +.....-.+.+.-+.+.|+++.|+++++-.-..-              .-. .|.
T Consensus       391 apvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk  470 (840)
T KOG2003|consen  391 APVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGK  470 (840)
T ss_pred             ccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhccc
Confidence            0000000                0 0001112234555677788888877654221100              000 000


Q ss_pred             --------------CChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHH
Q 010063          282 --------------ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE  347 (519)
Q Consensus       282 --------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  347 (519)
                                    .+...+.++.+-|.+-+..|++++|.+.|++++.        ++.....+++++|..+..+|+.++
T Consensus       471 ~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~lde  542 (840)
T KOG2003|consen  471 DFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDE  542 (840)
T ss_pred             chhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHH
Confidence                          1122334555566666677888888888888876        455666788888888888888888


Q ss_pred             HHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----------hhC---------
Q 010063          348 AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK----------YKG---------  408 (519)
Q Consensus       348 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----------~~~---------  408 (519)
                      |+++|-+...+....          +.++..++.+|..+.+..+|++++-++..+...          ++.         
T Consensus       543 ald~f~klh~il~nn----------~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqaf  612 (840)
T KOG2003|consen  543 ALDCFLKLHAILLNN----------AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAF  612 (840)
T ss_pred             HHHHHHHHHHHHHhh----------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhh
Confidence            888888877765432          455677778888788888888777766543100          000         


Q ss_pred             -------CCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHH
Q 010063          409 -------KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  481 (519)
Q Consensus       409 -------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  481 (519)
                             ...|...++...||..|....-+++|+.+|+++--+        .|........++.++.+.|+|++|.+.|+
T Consensus       613 q~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali--------qp~~~kwqlmiasc~rrsgnyqka~d~yk  684 (840)
T KOG2003|consen  613 QCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--------QPNQSKWQLMIASCFRRSGNYQKAFDLYK  684 (840)
T ss_pred             hhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence                   011222233333444444444455555555554332        34455555667777777777777777776


Q ss_pred             HHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhh
Q 010063          482 EALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLL  515 (519)
Q Consensus       482 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg  515 (519)
                      ..-.-+        |.-  ..|+.-|-.+...+|
T Consensus       685 ~~hrkf--------ped--ldclkflvri~~dlg  708 (840)
T KOG2003|consen  685 DIHRKF--------PED--LDCLKFLVRIAGDLG  708 (840)
T ss_pred             HHHHhC--------ccc--hHHHHHHHHHhcccc
Confidence            654422        211  355666666555554

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.81  E-value=2.7e-16  Score=162.46  Aligned_cols=308  Identities=12%  Similarity=0.076  Sum_probs=241.4

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      ....+..+.+.|+.++|.++++++.+.       +  ......++..+...|.+.|++++|..+|+.+....     -.|
T Consensus       475 ynsLI~~y~k~G~vd~A~~vf~eM~~~-------G--v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G-----v~P  540 (1060)
T PLN03218        475 YTTLISTCAKSGKVDAMFEVFHEMVNA-------G--VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN-----VKP  540 (1060)
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHHHHc-------C--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-----CCC
Confidence            444567789999999999999998754       1  22346789999999999999999999999876532     224


Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (519)
                      +. .+|..+...|.+.|++++|.+++.++......    -.|+ ..++..+...|.+.|++++|.++|+++.+.      
T Consensus       541 D~-vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g----i~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~------  608 (1060)
T PLN03218        541 DR-VVFNALISACGQSGAVDRAFDVLAEMKAETHP----IDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY------  608 (1060)
T ss_pred             CH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC----CCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc------
Confidence            43 34889999999999999999999987653111    1122 457788889999999999999999988664      


Q ss_pred             CCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (519)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (519)
                       +.+....+|+.+...|.+.|++++|..+|+++.+.      .-.|+ ..++..+...|.+.|++++|.++++++.+.  
T Consensus       609 -gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~------Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~--  678 (1060)
T PLN03218        609 -NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK------GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ--  678 (1060)
T ss_pred             -CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--
Confidence             23345678999999999999999999999998763      12344 347889999999999999999999998764  


Q ss_pred             hhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 010063          361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  440 (519)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  440 (519)
                           +..+.  ..++..+...|.+.|++++|.++|++....      ...|+ ..+|+.+...|.+.|++++|.++|++
T Consensus       679 -----G~~pd--~~tynsLI~ay~k~G~~eeA~~lf~eM~~~------g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~e  744 (1060)
T PLN03218        679 -----GIKLG--TVSYSSLMGACSNAKNWKKALELYEDIKSI------KLRPT-VSTMNALITALCEGNQLPKALEVLSE  744 (1060)
T ss_pred             -----CCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                 22222  236788999999999999999999986542      12333 36789999999999999999999998


Q ss_pred             HHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010063          441 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  485 (519)
Q Consensus       441 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  485 (519)
                      +...      .-.|+ ..++..+...+.+.|++++|..++.++.+
T Consensus       745 M~~~------Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k  782 (1060)
T PLN03218        745 MKRL------GLCPN-TITYSILLVASERKDDADVGLDLLSQAKE  782 (1060)
T ss_pred             HHHc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8652      12344 34677788899999999999999999876

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=6.7e-17  Score=146.25  Aligned_cols=324  Identities=15%  Similarity=0.161  Sum_probs=252.1

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      +-..+...+..|+++.|+.+|..++.+          +|.....+.+...+|..+|+|++|.+--.+..++.       |
T Consensus         5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l----------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-------p   67 (539)
T KOG0548|consen    5 LKEKGNAAFSSGDFETAIRLFTEAIML----------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-------P   67 (539)
T ss_pred             HHHHHHhhcccccHHHHHHHHHHHHcc----------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-------C
Confidence            455677888999999999999999988          66677788888889999999999988777776665       7


Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH---------------H------------------------------
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE---------------S------------------------------  235 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---------------~------------------------------  235 (519)
                      .++..|..+|..+.-.|+|++|+..|.+.++.-.               .                              
T Consensus        68 ~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~  147 (539)
T KOG0548|consen   68 DWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPA  147 (539)
T ss_pred             chhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHH
Confidence            8888899999999999999999998887765400               0                              


Q ss_pred             --------------------------h----c-------------------CC------------CCH------HHHHHH
Q 010063          236 --------------------------R----Y-------------------GK------------TSI------LLVTSL  248 (519)
Q Consensus       236 --------------------------~----~-------------------~~------------~~~------~~~~~~  248 (519)
                                                .    .                   .+            +..      ..+...
T Consensus       148 ~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e  227 (539)
T KOG0548|consen  148 YVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE  227 (539)
T ss_pred             HHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence                                      0    0                   00            000      123445


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 010063          249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV  328 (519)
Q Consensus       249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  328 (519)
                      ..+|...+...++..|++.|..++++.         .....+++.+-+|...|.+.+.+.....+++....... +...+
T Consensus       228 k~lgnaaykkk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ra-d~klI  297 (539)
T KOG0548|consen  228 KELGNAAYKKKDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRA-DYKLI  297 (539)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHH-HHHHH
Confidence            678888999999999999999999884         33567788999999999999999998888876443310 11225


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc----------------cCCCCchHHHHHHHHHHHHHHHcCChHHH
Q 010063          329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN----------------YMSLDDSIMENMRIDLAELLHIVGRGQEG  392 (519)
Q Consensus       329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A  392 (519)
                      +.++..+|..|...++++.|+.+|++++.-.+...                ...--.+..+.--..-|..++..|+|..|
T Consensus       298 ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~A  377 (539)
T KOG0548|consen  298 AKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEA  377 (539)
T ss_pred             HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHH
Confidence            55666688899999999999999999876543200                00000111222334568899999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCC
Q 010063          393 RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR  472 (519)
Q Consensus       393 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  472 (519)
                      +..|.+++.        ..|+....|.|.|.||..+|++..|+...+.++++        +|.....|..-|.++..+.+
T Consensus       378 v~~YteAIk--------r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~  441 (539)
T KOG0548|consen  378 VKHYTEAIK--------RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKE  441 (539)
T ss_pred             HHHHHHHHh--------cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHH
Confidence            999999887        35888899999999999999999999999999884        68889999999999999999


Q ss_pred             hHHHHHHHHHHHHHH
Q 010063          473 DKEAEKLVLEALYIR  487 (519)
Q Consensus       473 ~~~A~~~~~~a~~~~  487 (519)
                      |++|.+.|+++++..
T Consensus       442 ydkAleay~eale~d  456 (539)
T KOG0548|consen  442 YDKALEAYQEALELD  456 (539)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999998853

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=4.8e-17  Score=147.74  Aligned_cols=278  Identities=15%  Similarity=0.146  Sum_probs=223.4

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCC
Q 010063          160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK  239 (519)
Q Consensus       160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  239 (519)
                      +..+++...+..++..+++.+..++.+..++..    +-++..  .-..+| ++...|+..+   +|.-+.++..     
T Consensus       242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d----pfh~~~--~~~~ia-~l~el~~~n~---Lf~lsh~LV~-----  306 (611)
T KOG1173|consen  242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD----PFHLPC--LPLHIA-CLYELGKSNK---LFLLSHKLVD-----  306 (611)
T ss_pred             hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC----CCCcch--HHHHHH-HHHHhcccch---HHHHHHHHHH-----
Confidence            345667777888889999999988888877654    222222  234555 6677776544   4444444443     


Q ss_pred             CCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 010063          240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  319 (519)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  319 (519)
                      ..|..+.+|+.+|..|...|++.+|..++.++..+        ++..+.+|...|..+...|..++|+..|..|-++...
T Consensus       307 ~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G  378 (611)
T KOG1173|consen  307 LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG  378 (611)
T ss_pred             hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC
Confidence            34666788999999999999999999999999877        6777889999999999999999999999999887643


Q ss_pred             hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010063          320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  399 (519)
Q Consensus       320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  399 (519)
                      .   .     .....+|.-|...++++-|..+|.+|+.+.       |.+|.   ++..+|.+....+.|.+|..+|+.+
T Consensus       379 ~---h-----lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-------P~Dpl---v~~Elgvvay~~~~y~~A~~~f~~~  440 (611)
T KOG1173|consen  379 C---H-----LPSLYLGMEYMRTNNLKLAEKFFKQALAIA-------PSDPL---VLHELGVVAYTYEEYPEALKYFQKA  440 (611)
T ss_pred             C---c-----chHHHHHHHHHHhccHHHHHHHHHHHHhcC-------CCcch---hhhhhhheeehHhhhHHHHHHHHHH
Confidence            2   1     234558999999999999999999999984       44544   3488999999999999999999999


Q ss_pred             HHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHH
Q 010063          400 LLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL  479 (519)
Q Consensus       400 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  479 (519)
                      +...+... +..+.....+.+||.++.+++.+++|+.++++++.+        .|..+.++..+|-+|..+|+++.|+++
T Consensus       441 l~~ik~~~-~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Aid~  511 (611)
T KOG1173|consen  441 LEVIKSVL-NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAIDH  511 (611)
T ss_pred             HHHhhhcc-ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHHHH
Confidence            97666654 334456678899999999999999999999999984        466677889999999999999999999


Q ss_pred             HHHHHHHH
Q 010063          480 VLEALYIR  487 (519)
Q Consensus       480 ~~~a~~~~  487 (519)
                      |.+++.+.
T Consensus       512 fhKaL~l~  519 (611)
T KOG1173|consen  512 FHKALALK  519 (611)
T ss_pred             HHHHHhcC
Confidence            99999764

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.79  E-value=1.1e-17  Score=141.57  Aligned_cols=282  Identities=16%  Similarity=0.199  Sum_probs=224.8

Q ss_pred             HHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHH
Q 010063          128 MIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILL  207 (519)
Q Consensus       128 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (519)
                      ++...|...|-...+..+++-.............-.--..+|.||..+|-+.+|.+.++..+...+     +++   .+.
T Consensus       189 fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-----~~d---Tfl  260 (478)
T KOG1129|consen  189 FYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-----HPD---TFL  260 (478)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-----chh---HHH
Confidence            355667777877777666654332211111222223345799999999999999999998876542     222   377


Q ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 010063          208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV  287 (519)
Q Consensus       208 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  287 (519)
                      .|+.+|....+...|+..+.+.++.+        |..+..+..++.++..++++++|.++|+.+++.        ++...
T Consensus       261 lLskvY~ridQP~~AL~~~~~gld~f--------P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nv  324 (478)
T KOG1129|consen  261 LLSKVYQRIDQPERALLVIGEGLDSF--------PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINV  324 (478)
T ss_pred             HHHHHHHHhccHHHHHHHHhhhhhcC--------CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccc
Confidence            89999999999999999999988753        444677889999999999999999999999986        56667


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCC
Q 010063          288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  367 (519)
Q Consensus       288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  367 (519)
                      .+...+|..|...++++-|+.+|++.+.+     |..+   ...+.|+|.+++..+++|-++..|++++....       
T Consensus       325 EaiAcia~~yfY~~~PE~AlryYRRiLqm-----G~~s---peLf~NigLCC~yaqQ~D~~L~sf~RAlstat-------  389 (478)
T KOG1129|consen  325 EAIACIAVGYFYDNNPEMALRYYRRILQM-----GAQS---PELFCNIGLCCLYAQQIDLVLPSFQRALSTAT-------  389 (478)
T ss_pred             eeeeeeeeccccCCChHHHHHHHHHHHHh-----cCCC---hHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc-------
Confidence            77788899999999999999999999987     2233   45689999999999999999999999998853       


Q ss_pred             CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010063          368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK  447 (519)
Q Consensus       368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  447 (519)
                      .+...+.+|+|+|.+....|++.-|...|+-++.        .+++...++++||.+-.+.|+.++|..++..|-..   
T Consensus       390 ~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--------~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~---  458 (478)
T KOG1129|consen  390 QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--------SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV---  458 (478)
T ss_pred             CcchhhhhhhccceeEEeccchHHHHHHHHHHhc--------cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh---
Confidence            3555678899999999999999999999998876        56777899999999999999999999999988763   


Q ss_pred             hcCCCCcchhHHHHHHH
Q 010063          448 TVGPDDQSISFPMLHLG  464 (519)
Q Consensus       448 ~~~~~~~~~~~~~~~la  464 (519)
                           .|+..+...+++
T Consensus       459 -----~P~m~E~~~Nl~  470 (478)
T KOG1129|consen  459 -----MPDMAEVTTNLQ  470 (478)
T ss_pred             -----Ccccccccccee
Confidence                 355555445544

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.78  E-value=1.2e-16  Score=163.32  Aligned_cols=328  Identities=14%  Similarity=0.120  Sum_probs=237.5

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHH------------HHh--------------cCCCChHHHHHHHHHHHHHHh
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKE------------QIN--------------AGNKGIEEVAILDIIALGYVY  174 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~------------~~~--------------~~~~~~~~~~~~~~l~~~~~~  174 (519)
                      +...+..+.+.|++++|+.+|+++++.-..            ...              ....-.....+++.+...|.+
T Consensus       192 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k  271 (697)
T PLN03081        192 WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK  271 (697)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHH
Confidence            455667888999999999999998653000            000              000011123355677888999


Q ss_pred             cCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010063          175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV  254 (519)
Q Consensus       175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  254 (519)
                      .|++++|...|+.+..         +. ..+|+.+...|...|++++|+.+|++....   ...++    ..++..+...
T Consensus       272 ~g~~~~A~~vf~~m~~---------~~-~vt~n~li~~y~~~g~~~eA~~lf~~M~~~---g~~pd----~~t~~~ll~a  334 (697)
T PLN03081        272 CGDIEDARCVFDGMPE---------KT-TVAWNSMLAGYALHGYSEEALCLYYEMRDS---GVSID----QFTFSIMIRI  334 (697)
T ss_pred             CCCHHHHHHHHHhCCC---------CC-hhHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHH
Confidence            9999999999876521         11 235889999999999999999999987542   11122    4478888899


Q ss_pred             HhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 010063          255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCS  334 (519)
Q Consensus       255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  334 (519)
                      +...|++++|.+.+..+++.       ..+....+++.+...|.+.|++++|...|++..+          ++ ..+|+.
T Consensus       335 ~~~~g~~~~a~~i~~~m~~~-------g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~d-~~t~n~  396 (697)
T PLN03081        335 FSRLALLEHAKQAHAGLIRT-------GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----------KN-LISWNA  396 (697)
T ss_pred             HHhccchHHHHHHHHHHHHh-------CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------CC-eeeHHH
Confidence            99999999999999888765       2333456788899999999999999999987642          22 347889


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhH
Q 010063          335 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF  414 (519)
Q Consensus       335 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  414 (519)
                      +...|.+.|+.++|+++|+++.+.     ...|+    ..++..+...+...|..++|.++|+...+..     ...|+ 
T Consensus       397 lI~~y~~~G~~~~A~~lf~~M~~~-----g~~Pd----~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~-----g~~p~-  461 (697)
T PLN03081        397 LIAGYGNHGRGTKAVEMFERMIAE-----GVAPN----HVTFLAVLSACRYSGLSEQGWEIFQSMSENH-----RIKPR-  461 (697)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-----CCCCC----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-----CCCCC-
Confidence            999999999999999999998764     12233    2345778888999999999999998876531     11222 


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCC
Q 010063          415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD  494 (519)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  494 (519)
                      ...|..+...|.+.|++++|.+.++++         +..|+ ..++..+...+...|+.+.|...+++.+++     +++
T Consensus       462 ~~~y~~li~~l~r~G~~~eA~~~~~~~---------~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~-----~p~  526 (697)
T PLN03081        462 AMHYACMIELLGREGLLDEAYAMIRRA---------PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGM-----GPE  526 (697)
T ss_pred             ccchHhHHHHHHhcCCHHHHHHHHHHC---------CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCC-----CCC
Confidence            356778899999999999999887643         22233 346788888899999999999988877543     233


Q ss_pred             CCcchhhHHHHHHHHHHHHhhhcc
Q 010063          495 SLPVGKLFCFVLFGLVWFCLLLYK  518 (519)
Q Consensus       495 ~~~~~~~~~~~~l~~~~~~lg~~k  518 (519)
                      +.     ..+..|..+|...|++.
T Consensus       527 ~~-----~~y~~L~~~y~~~G~~~  545 (697)
T PLN03081        527 KL-----NNYVVLLNLYNSSGRQA  545 (697)
T ss_pred             CC-----cchHHHHHHHHhCCCHH
Confidence            33     34778888998888764

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.78  E-value=8.6e-16  Score=131.09  Aligned_cols=319  Identities=16%  Similarity=0.085  Sum_probs=249.7

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcC
Q 010063          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK  196 (519)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  196 (519)
                      .+..-+..+..++..|++..|+..|..|++.          +|..-.+++..|.+|..+|+-..|+.-+.+++++.    
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK----  102 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK----  102 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC----
Confidence            4455778899999999999999999999988          89999999999999999999999999999998775    


Q ss_pred             CCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 010063          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT-------SILLVTSLLGMAKVLGSIGRAKKAVEIYH  269 (519)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~  269 (519)
                         |+...+....|.++..+|++++|..-|.++++.........       .......+......+...|++..|+.+..
T Consensus       103 ---pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~  179 (504)
T KOG0624|consen  103 ---PDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMIT  179 (504)
T ss_pred             ---ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence               77777788999999999999999999999887421100000       00112233444556777899999999999


Q ss_pred             HHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHH
Q 010063          270 RVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV  349 (519)
Q Consensus       270 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  349 (519)
                      ..+++        .|..+..+...+.+|...|+...|+.-++.+-++        ..+....++.++.+++..|+.+.++
T Consensus       180 ~llEi--------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL--------s~DnTe~~ykis~L~Y~vgd~~~sL  243 (504)
T KOG0624|consen  180 HLLEI--------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL--------SQDNTEGHYKISQLLYTVGDAENSL  243 (504)
T ss_pred             HHHhc--------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--------cccchHHHHHHHHHHHhhhhHHHHH
Confidence            99987        5666788888999999999999999999888765        2344457889999999999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCchHHHHHHHHHH---------HHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHH
Q 010063          350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLA---------ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN  420 (519)
Q Consensus       350 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~la---------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  420 (519)
                      ...++++++       .|++..-...|-.+-         .-....++|.++++..++.++.-.+    ..+........
T Consensus       244 ~~iRECLKl-------dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~----~~~ir~~~~r~  312 (504)
T KOG0624|consen  244 KEIRECLKL-------DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE----ETMIRYNGFRV  312 (504)
T ss_pred             HHHHHHHcc-------CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc----ccceeeeeehe
Confidence            999999987       566654443333332         2334556677777666666552111    12223445567


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       421 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                      +..|+..-|++.+|+....++++        ..|+.+.++...|.+|.....|+.|+.-|++|.+..
T Consensus       313 ~c~C~~~d~~~~eAiqqC~evL~--------~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  313 LCTCYREDEQFGEAIQQCKEVLD--------IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN  371 (504)
T ss_pred             eeecccccCCHHHHHHHHHHHHh--------cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence            78899999999999999999998        357778899999999999999999999999998754

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=1.3e-16  Score=142.22  Aligned_cols=272  Identities=12%  Similarity=0.074  Sum_probs=217.4

Q ss_pred             ChhHHHHHHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHH
Q 010063          133 NKNDAIDLLQANYEAVKEQINAGN---KGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM  209 (519)
Q Consensus       133 ~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l  209 (519)
                      .|.+|.+.+.+.............   .....+.++...|..++-.|++-.|...++.++.+..       .....|..+
T Consensus       294 ~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~-------~~~~lyI~~  366 (606)
T KOG0547|consen  294 GYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP-------AFNSLYIKR  366 (606)
T ss_pred             hHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc-------ccchHHHHH
Confidence            688888888877655444321111   1234477888999999999999999999999998762       222338889


Q ss_pred             HHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 010063          210 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP  289 (519)
Q Consensus       210 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  289 (519)
                      |..|....+..+....|.+|..+        +|....+|+..|.+++-.+++++|+.-|++++.+        .|..+..
T Consensus       367 a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~pe~~~~  430 (606)
T KOG0547|consen  367 AAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DPENAYA  430 (606)
T ss_pred             HHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------ChhhhHH
Confidence            99999999999999999999886        2444668899999999999999999999999997        6778899


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCc
Q 010063          290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD  369 (519)
Q Consensus       290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  369 (519)
                      +..++...++++++++++..|+++.+.        .|....+++..|.++..+++|++|++.|+.++++-......   .
T Consensus       431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkk--------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~---~  499 (606)
T KOG0547|consen  431 YIQLCCALYRQHKIAESMKTFEEAKKK--------FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI---I  499 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc---c
Confidence            999999999999999999999999884        47777889999999999999999999999999985442100   0


Q ss_pred             hHHHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010063          370 SIMENMRIDLAEL-LHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK  447 (519)
Q Consensus       370 ~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  447 (519)
                      .. +..+...|.+ +.-.+++..|+.++++|+++        +|..-.++..||.+..++|+.++|+++|+++..+.+.
T Consensus       500 v~-~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt  569 (606)
T KOG0547|consen  500 VN-AAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART  569 (606)
T ss_pred             cc-chhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            00 1112222222 22458999999999999985        5666678999999999999999999999999987654

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.77  E-value=5.7e-15  Score=127.03  Aligned_cols=346  Identities=14%  Similarity=0.091  Sum_probs=269.3

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      -+..+..++...++++|+..+.+.+.....       .......+-.+..+...+|.|++++.+--..+...... ++..
T Consensus         9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~-------~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~-~ds~   80 (518)
T KOG1941|consen    9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSD-------LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL-EDSD   80 (518)
T ss_pred             HHHHHHhHhcCchHHHHHHHHHHHHHHHHH-------HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            455778889999999999999998887554       44556677788888999999999887765555544332 2334


Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS-ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (519)
                      ....++.+++..+....++.+++.+-...+.+-    +.+. ..-......+|..+..++.++++++.|++|+++.....
T Consensus        81 ~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~  156 (518)
T KOG1941|consen   81 FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNND  156 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC
Confidence            455678899999999999999998877666542    1111 12235566789999999999999999999999987654


Q ss_pred             CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010063          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND--GRVGMAMCSLAHAKCANGNAEEAVELYKKALR  357 (519)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  357 (519)
                        +......++..||..+....++++|.-+..+|.++.....-.+.  .....+++.++..+..+|+.-.|.++.+++.+
T Consensus       157 --D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k  234 (518)
T KOG1941|consen  157 --DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK  234 (518)
T ss_pred             --CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence              33344678889999999999999999999999999876632221  22456788899999999999999999999999


Q ss_pred             HHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHH----
Q 010063          358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE----  433 (519)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----  433 (519)
                      +.-.    ..+.+..+.....+|.+|...|+.+.|..-|++|..+.....  +......++...|.++....-..+    
T Consensus       235 lal~----~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g--drmgqv~al~g~Akc~~~~r~~~k~~~C  308 (518)
T KOG1941|consen  235 LALQ----HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG--DRMGQVEALDGAAKCLETLRLQNKICNC  308 (518)
T ss_pred             HHHH----hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            8776    467777888889999999999999999999999999887763  444556677777877766555555    


Q ss_pred             -HHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010063          434 -AERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  488 (519)
Q Consensus       434 -A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  488 (519)
                       |++.-++++++..++.  ...........++.+|..+|.-++=...+..+-+..+
T Consensus       309 rale~n~r~levA~~IG--~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~  362 (518)
T KOG1941|consen  309 RALEFNTRLLEVASSIG--AKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECVE  362 (518)
T ss_pred             chhHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence             9999999999988762  2345667788999999999998888888777665543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.77  E-value=1.5e-14  Score=122.81  Aligned_cols=306  Identities=14%  Similarity=0.118  Sum_probs=235.0

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      -+-.+..+.-..+.++|++.|..+++.          +++..++...+|..|...|..+.|+.+.+......   +-...
T Consensus        38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~----------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp---dlT~~  104 (389)
T COG2956          38 DYVKGLNFLLSNQPDKAVDLFLEMLQE----------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP---DLTFE  104 (389)
T ss_pred             HHHhHHHHHhhcCcchHHHHHHHHHhc----------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---CCchH
Confidence            344566677788999999999999886          88899999999999999999999999998876543   22223


Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (519)
                      ....++..||.-|...|-++.|+..|....+.-        .....++..+..+|....+|++|++..++...+-.+   
T Consensus       105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~--------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---  173 (389)
T COG2956         105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG--------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---  173 (389)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch--------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---
Confidence            455678999999999999999999998876531        233557788899999999999999999888776322   


Q ss_pred             CCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (519)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (519)
                      +.....+..+..++..+....+.+.|...+.+|++.        +|....+-..+|.+....|+|+.|++.++.+++.  
T Consensus       174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--  243 (389)
T COG2956         174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--  243 (389)
T ss_pred             cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHHHHHh--
Confidence            234567888899999999999999999999999984        5777778888999999999999999999998775  


Q ss_pred             hhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 010063          361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  440 (519)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  440 (519)
                             ++..+..+...|..+|...|+.++....+.++.+...      .+   .....++..-....-.+.|..++.+
T Consensus       244 -------n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~------g~---~~~l~l~~lie~~~G~~~Aq~~l~~  307 (389)
T COG2956         244 -------NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT------GA---DAELMLADLIELQEGIDAAQAYLTR  307 (389)
T ss_pred             -------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC------Cc---cHHHHHHHHHHHhhChHHHHHHHHH
Confidence                   5666777888999999999999999999999887532      11   2334455555566666777777766


Q ss_pred             HHHHHHHhcCCCCcchhHHHHHHHHHHH---hcCChHHHHHHHHHHHH
Q 010063          441 CLDIMTKTVGPDDQSISFPMLHLGITLY---HLNRDKEAEKLVLEALY  485 (519)
Q Consensus       441 al~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~a~~  485 (519)
                      -+.        .+|.....+. +-....   .-|...+....++..+.
T Consensus       308 Ql~--------r~Pt~~gf~r-l~~~~l~daeeg~~k~sL~~lr~mvg  346 (389)
T COG2956         308 QLR--------RKPTMRGFHR-LMDYHLADAEEGRAKESLDLLRDMVG  346 (389)
T ss_pred             HHh--------hCCcHHHHHH-HHHhhhccccccchhhhHHHHHHHHH
Confidence            555        3566554433 332222   23445666666666654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.76  E-value=1.9e-15  Score=152.02  Aligned_cols=165  Identities=11%  Similarity=-0.069  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH-h--h-
Q 010063          332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK-Y--K-  407 (519)
Q Consensus       332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~--~-  407 (519)
                      ....|..|...+++++|+.+|++++.-....   .+.+.. ......|...|...+++++|..++++..+...- .  . 
T Consensus       330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~~---~~~~~~-~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~  405 (822)
T PRK14574        330 RRWAASAYIDRRLPEKAAPILSSLYYSDGKT---FRNSDD-LLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYG  405 (822)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHhhccccc---cCCCcc-hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccC
Confidence            3445667777788888888887775532110   011111 122356788889999999999999988763210 0  1 


Q ss_pred             ---CCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010063          408 ---GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL  484 (519)
Q Consensus       408 ---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  484 (519)
                         ...+|+.......++.++...|++.+|++.+++.+..        .|........+|.++...|++.+|+..++.+.
T Consensus       406 ~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--------aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~  477 (822)
T PRK14574        406 LPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--------APANQNLRIALASIYLARDLPRKAEQELKAVE  477 (822)
T ss_pred             CCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence               1246777788889999999999999999999998773        46667778899999999999999999997776


Q ss_pred             HHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063          485 YIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYK  518 (519)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~k  518 (519)
                      .+.     |+..     ......|.++..+|+++
T Consensus       478 ~l~-----P~~~-----~~~~~~~~~al~l~e~~  501 (822)
T PRK14574        478 SLA-----PRSL-----ILERAQAETAMALQEWH  501 (822)
T ss_pred             hhC-----CccH-----HHHHHHHHHHHhhhhHH
Confidence            642     3333     33668888988888875

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.76  E-value=1.9e-15  Score=133.73  Aligned_cols=195  Identities=14%  Similarity=0.099  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (519)
                      ..+++++|..+..+|+.++|+++|-+...+..        ..+.++..++.+|..+.+..+|++++-++..+        
T Consensus       524 ~ealfniglt~e~~~~ldeald~f~klh~il~--------nn~evl~qianiye~led~aqaie~~~q~~sl--------  587 (840)
T KOG2003|consen  524 TEALFNIGLTAEALGNLDEALDCFLKLHAILL--------NNAEVLVQIANIYELLEDPAQAIELLMQANSL--------  587 (840)
T ss_pred             HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--------
Confidence            44444444444444444444444444443321        12344444444444444444444444444332        


Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010063          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (519)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (519)
                      .|....++..||.+|-+.|+-.+|.+++-.....+.       ..   ..+...||..|....=+++|+.+|+++--   
T Consensus       588 ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp-------~n---ie~iewl~ayyidtqf~ekai~y~ekaal---  654 (840)
T KOG2003|consen  588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFP-------CN---IETIEWLAAYYIDTQFSEKAINYFEKAAL---  654 (840)
T ss_pred             CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccC-------cc---hHHHHHHHHHHHhhHHHHHHHHHHHHHHh---
Confidence            122222344445555555555555444444333311       11   11223455555555556666666666543   


Q ss_pred             HhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHH
Q 010063          405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE  482 (519)
Q Consensus       405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  482 (519)
                           ..|........++.|+.+.|+|.+|.+.|+....        ..|....++.-|..+.-.+|- .+|.++-.+
T Consensus       655 -----iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr--------kfpedldclkflvri~~dlgl-~d~key~~k  718 (840)
T KOG2003|consen  655 -----IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR--------KFPEDLDCLKFLVRIAGDLGL-KDAKEYADK  718 (840)
T ss_pred             -----cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--------hCccchHHHHHHHHHhccccc-hhHHHHHHH
Confidence                 2456666677889999999999999999998765        246667777777777777664 344444433

>PRK12370 invasion protein regulator; Provisional

Probab=99.76  E-value=3.3e-16  Score=154.58  Aligned_cols=251  Identities=10%  Similarity=-0.027  Sum_probs=193.0

Q ss_pred             CChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhc---------CChHHHHHHHHHHHhhhhhcCCCchHH
Q 010063          132 GNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI---------GDLKFVQSLLDMMSGIVDSLKDDEPLL  202 (519)
Q Consensus       132 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~  202 (519)
                      +++++|+.+++++++.          +|..+.++..+|.++...         +++++|...+++++++.       |..
T Consensus       275 ~~~~~A~~~~~~Al~l----------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-------P~~  337 (553)
T PRK12370        275 YSLQQALKLLTQCVNM----------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-------HNN  337 (553)
T ss_pred             HHHHHHHHHHHHHHhc----------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-------CCC
Confidence            4578999999999988          777888888999887643         34789999999988764       444


Q ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (519)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (519)
                      ..++..+|.++...|++++|+..|++++++.        |....++..+|.++...|++++|+..+++++++        
T Consensus       338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--------  401 (553)
T PRK12370        338 PQALGLLGLINTIHSEYIVGSLLFKQANLLS--------PISADIKYYYGWNLFMAGQLEEALQTINECLKL--------  401 (553)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence            5568889999999999999999999999862        444667889999999999999999999999987        


Q ss_pred             ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (519)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (519)
                      +|........++.++...|++++|+..+++++..       ..|.....+.++|.++...|++++|...+.+....    
T Consensus       402 ~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-------~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~----  470 (553)
T PRK12370        402 DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ-------HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ----  470 (553)
T ss_pred             CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-------ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc----
Confidence            3444444455666777899999999999998764       23555567888999999999999999999876443    


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 010063          363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  442 (519)
Q Consensus       363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (519)
                            .+........++..|...|  ++|...+++.++......  .++      ..++.+|.-.|+.+.+..+ +++.
T Consensus       471 ------~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~--~~~------~~~~~~~~~~g~~~~~~~~-~~~~  533 (553)
T PRK12370        471 ------EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID--NNP------GLLPLVLVAHGEAIAEKMW-NKFK  533 (553)
T ss_pred             ------cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh--cCc------hHHHHHHHHHhhhHHHHHH-HHhh
Confidence                  2222345577888888888  488888888666544321  111      2267778888888888776 6554


Q ss_pred             H
Q 010063          443 D  443 (519)
Q Consensus       443 ~  443 (519)
                      +
T Consensus       534 ~  534 (553)
T PRK12370        534 N  534 (553)
T ss_pred             c
Confidence            4

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.76  E-value=7.9e-18  Score=152.28  Aligned_cols=266  Identities=18%  Similarity=0.169  Sum_probs=109.9

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchH
Q 010063          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL  201 (519)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  201 (519)
                      +..+..++..|++++|++.+.+.+...        .++.....+..+|.+....|+++.|+..+++++...       +.
T Consensus        12 l~~A~~~~~~~~~~~Al~~L~~~~~~~--------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-------~~   76 (280)
T PF13429_consen   12 LRLARLLYQRGDYEKALEVLKKAAQKI--------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-------KA   76 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccc--------cccccccccccccccccccccccccccccccccccc-------cc
Confidence            456888899999999999997665431        135566788889999999999999999999987654       22


Q ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC
Q 010063          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT  281 (519)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  281 (519)
                      ....+..++.+ ...+++++|..+++++.+..      .+   ...+.....++...++++++...++++....      
T Consensus        77 ~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~------~~---~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~------  140 (280)
T PF13429_consen   77 NPQDYERLIQL-LQDGDPEEALKLAEKAYERD------GD---PRYLLSALQLYYRLGDYDEAEELLEKLEELP------  140 (280)
T ss_dssp             ---------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T------
T ss_pred             ccccccccccc-cccccccccccccccccccc------cc---cchhhHHHHHHHHHhHHHHHHHHHHHHHhcc------
Confidence            22335566666 68999999999998876542      11   2334456778889999999999999977421      


Q ss_pred             CChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063          282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (519)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (519)
                      ..+.....+..+|.++...|++++|+..++++++.        .|....+...++.++...|+++++.+.+....+....
T Consensus       141 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~  212 (280)
T PF13429_consen  141 AAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD  212 (280)
T ss_dssp             ---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC
Confidence            23455778899999999999999999999999996        4666667788999999999999988888887766422


Q ss_pred             hccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010063          362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  441 (519)
Q Consensus       362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (519)
                             ++.   .+..+|.++...|++++|+.++++++..        +|.....+..+|.++...|+.++|..+++++
T Consensus       213 -------~~~---~~~~la~~~~~lg~~~~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  213 -------DPD---LWDALAAAYLQLGRYEEALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             -------SCC---HCHHHHHHHHHHT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHT---------------
T ss_pred             -------HHH---HHHHHHHHhccccccccccccccccccc--------ccccccccccccccccccccccccccccccc
Confidence                   222   3467899999999999999999998874        4555677889999999999999999999998


Q ss_pred             HHH
Q 010063          442 LDI  444 (519)
Q Consensus       442 l~~  444 (519)
                      +..
T Consensus       275 ~~~  277 (280)
T PF13429_consen  275 LRL  277 (280)
T ss_dssp             ---
T ss_pred             ccc
Confidence            764

>TIGR00540 hemY_coli hemY protein

Probab=99.76  E-value=5.5e-15  Score=140.66  Aligned_cols=316  Identities=12%  Similarity=0.001  Sum_probs=220.2

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (519)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (519)
                      .......|......|+++.|.+.+.++.+.          .|.....+...|.++...|+++.|..++.++.+..   +.
T Consensus        84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~----------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~---p~  150 (409)
T TIGR00540        84 AQKQTEEALLKLAEGDYAKAEKLIAKNADH----------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA---GN  150 (409)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHhhc----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---Cc
Confidence            334567778889999999999999887665          44445566678999999999999999999987543   12


Q ss_pred             CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010063          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (519)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (519)
                      ....   +....+.++...|++++|...+++..+.     .|++   ..++..++.++...|++++|.+.+.+..+..  
T Consensus       151 ~~l~---~~~~~a~l~l~~~~~~~Al~~l~~l~~~-----~P~~---~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~--  217 (409)
T TIGR00540       151 DNIL---VEIARTRILLAQNELHAARHGVDKLLEM-----APRH---KEVLKLAEEAYIRSGAWQALDDIIDNMAKAG--  217 (409)
T ss_pred             CchH---HHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--
Confidence            1111   2344588999999999999999988775     2333   4567789999999999999999998887651  


Q ss_pred             hcCCCChhhH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010063          278 NRGTESADLV-LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  356 (519)
Q Consensus       278 ~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  356 (519)
                         ..++... ........-....+..+++...+.++......    ..+.....+..++..+...|++++|.+.+++++
T Consensus       218 ---~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~----~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l  290 (409)
T TIGR00540       218 ---LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPR----HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGL  290 (409)
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCH----HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence               1122222 22222222223334444455566655543211    112355677889999999999999999999999


Q ss_pred             HHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHH--HHHHHHHHHHHhccCHHHH
Q 010063          357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV--THLLNLAASYSRSKNFVEA  434 (519)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A  434 (519)
                      +..       +++...... ..........++.+.+.+.++++++.        +|+..  ..+..+|.++...|++++|
T Consensus       291 ~~~-------pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~--------~p~~~~~~ll~sLg~l~~~~~~~~~A  354 (409)
T TIGR00540       291 KKL-------GDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKN--------VDDKPKCCINRALGQLLMKHGEFIEA  354 (409)
T ss_pred             hhC-------CCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHHHcccHHHH
Confidence            872       333321100 11222333457788888888887763        34444  6788899999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010063          435 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI  489 (519)
Q Consensus       435 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  489 (519)
                      .++|+++....      .+|+... +..+|.++.+.|+.++|.+++++++...-.
T Consensus       355 ~~~le~a~a~~------~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~~~  402 (409)
T TIGR00540       355 ADAFKNVAACK------EQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLMLA  402 (409)
T ss_pred             HHHHHHhHHhh------cCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence            99999543321      2344433 458999999999999999999999887643

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK12370 invasion protein regulator; Provisional

Probab=99.76  E-value=2e-15  Score=149.11  Aligned_cols=263  Identities=12%  Similarity=0.024  Sum_probs=198.1

Q ss_pred             HHHHHHHHHHh---cCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHcc---------ccHHHHHHHHHHHHH
Q 010063          164 ILDIIALGYVY---IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTL---------ENYEKSMLVYQRVIN  231 (519)
Q Consensus       164 ~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~  231 (519)
                      .++..|.....   .+++++|+..+++++++.       |....++..+|.++...         +++++|+..++++++
T Consensus       260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~  332 (553)
T PRK12370        260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE  332 (553)
T ss_pred             HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence            34445554433   345678999999988764       44555677788776533         458899999999988


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHH
Q 010063          232 VLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFS  311 (519)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  311 (519)
                      +        +|....++..+|.++...|++++|+..|++++++        .|....+++.+|.++...|++++|+..++
T Consensus       333 l--------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~  396 (553)
T PRK12370        333 L--------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEALQTIN  396 (553)
T ss_pred             c--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            6        2344667888999999999999999999999997        56677889999999999999999999999


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHH
Q 010063          312 RILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQE  391 (519)
Q Consensus       312 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  391 (519)
                      +++++        +|........++.++...|++++|+..+++++...      .++.   ...+..+|.++...|++++
T Consensus       397 ~Al~l--------~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~------~p~~---~~~~~~la~~l~~~G~~~e  459 (553)
T PRK12370        397 ECLKL--------DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH------LQDN---PILLSMQVMFLSLKGKHEL  459 (553)
T ss_pred             HHHhc--------CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc------cccC---HHHHHHHHHHHHhCCCHHH
Confidence            99986        33333344456667778999999999999987652      1223   3355789999999999999


Q ss_pred             HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcC
Q 010063          392 GRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN  471 (519)
Q Consensus       392 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  471 (519)
                      |...+++...        ..|........++..|...|  ++|...+++.++.....  +.++      ..++.+|.-.|
T Consensus       460 A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~--~~~~------~~~~~~~~~~g  521 (553)
T PRK12370        460 ARKLTKEIST--------QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI--DNNP------GLLPLVLVAHG  521 (553)
T ss_pred             HHHHHHHhhh--------ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh--hcCc------hHHHHHHHHHh
Confidence            9999987644        34555567788888888888  48888888876654332  1221      23677888899


Q ss_pred             ChHHHHHHHHHHHH
Q 010063          472 RDKEAEKLVLEALY  485 (519)
Q Consensus       472 ~~~~A~~~~~~a~~  485 (519)
                      +.+.|..+ +++.+
T Consensus       522 ~~~~~~~~-~~~~~  534 (553)
T PRK12370        522 EAIAEKMW-NKFKN  534 (553)
T ss_pred             hhHHHHHH-HHhhc
Confidence            98888877 66655

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.76  E-value=2.2e-16  Score=133.81  Aligned_cols=280  Identities=15%  Similarity=0.072  Sum_probs=224.7

Q ss_pred             ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhh--cCCCchH-HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Q 010063          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS--LKDDEPL-LDAILLHMGSMYSTLENYEKSMLVYQRVINVLE  234 (519)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  234 (519)
                      .|....+++.  .+++...|...|........++...  .+...-. -.+.-..+|.||...|-+.+|.+.++.++.-. 
T Consensus       177 ~p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~-  253 (478)
T KOG1129|consen  177 RPTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF-  253 (478)
T ss_pred             ChHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC-
Confidence            4444444443  3566677888887666554443222  1111111 11224579999999999999999999988742 


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010063          235 SRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL  314 (519)
Q Consensus       235 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  314 (519)
                           .+   .+++..++.+|....++..|+..+.+.++.        .|.....+..+++++..++++++|.++|+.++
T Consensus       254 -----~~---~dTfllLskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vl  317 (478)
T KOG1129|consen  254 -----PH---PDTFLLLSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVL  317 (478)
T ss_pred             -----Cc---hhHHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHH
Confidence                 22   556778999999999999999999999875        56677888899999999999999999999999


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHH
Q 010063          315 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE  394 (519)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  394 (519)
                      +.        ++....+...+|.-|+..++++-|+.+|++.+.+       +...+   ..+.|+|.|..-.++++-++.
T Consensus       318 k~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-------G~~sp---eLf~NigLCC~yaqQ~D~~L~  379 (478)
T KOG1129|consen  318 KL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-------GAQSP---ELFCNIGLCCLYAQQIDLVLP  379 (478)
T ss_pred             hc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-------cCCCh---HHHhhHHHHHHhhcchhhhHH
Confidence            84        5666667777899999999999999999999987       44444   345899999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChH
Q 010063          395 LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDK  474 (519)
Q Consensus       395 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  474 (519)
                      .|++++....     .....+++|+++|.+....|++.-|..+|+-++.        .+++...++++||.+-.+.|+.+
T Consensus       380 sf~RAlstat-----~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--------~d~~h~ealnNLavL~~r~G~i~  446 (478)
T KOG1129|consen  380 SFQRALSTAT-----QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--------SDAQHGEALNNLAVLAARSGDIL  446 (478)
T ss_pred             HHHHHHhhcc-----CcchhhhhhhccceeEEeccchHHHHHHHHHHhc--------cCcchHHHHHhHHHHHhhcCchH
Confidence            9999998763     2345678999999999999999999999998887        46778889999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 010063          475 EAEKLVLEALYIR  487 (519)
Q Consensus       475 ~A~~~~~~a~~~~  487 (519)
                      +|..++..|-...
T Consensus       447 ~Arsll~~A~s~~  459 (478)
T KOG1129|consen  447 GARSLLNAAKSVM  459 (478)
T ss_pred             HHHHHHHHhhhhC
Confidence            9999999987765

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.75  E-value=7.2e-18  Score=152.52  Aligned_cols=266  Identities=20%  Similarity=0.203  Sum_probs=107.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 010063          167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT  246 (519)
Q Consensus       167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  246 (519)
                      .+|.++...|++++|.+.+.+......     +|.....+..+|.+....+++++|+..|++.+....        ....
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~-----~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~--------~~~~   79 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIA-----PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK--------ANPQ   79 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccc-----cccccccccccccccccccccccccccccccccccc--------cccc
Confidence            669999999999999999965433220     133335577899999999999999999999887532        2233


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  326 (519)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  326 (519)
                      .+..++.+ ...+++++|..+++++.+..         .....+..+..++...++++++...++++...      ...+
T Consensus        80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~---------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------~~~~  143 (280)
T PF13429_consen   80 DYERLIQL-LQDGDPEEALKLAEKAYERD---------GDPRYLLSALQLYYRLGDYDEAEELLEKLEEL------PAAP  143 (280)
T ss_dssp             ------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-------T---
T ss_pred             cccccccc-cccccccccccccccccccc---------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhc------cCCC
Confidence            45566666 68999999999998876542         11234455677889999999999999997742      1234


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 010063          327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  406 (519)
Q Consensus       327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  406 (519)
                      .....+..+|.++...|+.++|+..++++++.       .|+++.   +...++.++...|+++++.+.+.......   
T Consensus       144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-------~P~~~~---~~~~l~~~li~~~~~~~~~~~l~~~~~~~---  210 (280)
T PF13429_consen  144 DSARFWLALAEIYEQLGDPDKALRDYRKALEL-------DPDDPD---ARNALAWLLIDMGDYDEAREALKRLLKAA---  210 (280)
T ss_dssp             T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--------TT-HH---HHHHHHHHHCTTCHHHHHHHHHHHHHHH----
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCHH---HHHHHHHHHHHCCChHHHHHHHHHHHHHC---
Confidence            55668889999999999999999999999998       344443   44678999999999999888877765543   


Q ss_pred             hCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063          407 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (519)
Q Consensus       407 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (519)
                        +.+|   ..+..+|.++...|++++|+.++++++..        +|.....+..+|.++...|+.++|..++++++..
T Consensus       211 --~~~~---~~~~~la~~~~~lg~~~~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  211 --PDDP---DLWDALAAAYLQLGRYEEALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             --HTSC---CHCHHHHHHHHHHT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHT------------------
T ss_pred             --cCHH---HHHHHHHHHhccccccccccccccccccc--------cccccccccccccccccccccccccccccccccc
Confidence              1233   34567899999999999999999998873        4555667789999999999999999999998865


Q ss_pred             H
Q 010063          487 R  487 (519)
Q Consensus       487 ~  487 (519)
                      .
T Consensus       278 l  278 (280)
T PF13429_consen  278 L  278 (280)
T ss_dssp             -
T ss_pred             c
Confidence            4

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.75  E-value=1.1e-15  Score=135.27  Aligned_cols=204  Identities=16%  Similarity=0.113  Sum_probs=169.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (519)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (519)
                      ......+..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|+..++++++.     
T Consensus        28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----   94 (234)
T TIGR02521        28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL-----   94 (234)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----
Confidence            345778889999999999999999999999875        4556788899999999999999999999999985     


Q ss_pred             CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010063          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  401 (519)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  401 (519)
                         .|.....+.++|.++...|++++|+..+++++...        ..+.....+..+|.++...|++++|...+++++.
T Consensus        95 ---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  163 (234)
T TIGR02521        95 ---NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP--------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ  163 (234)
T ss_pred             ---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence               23444578899999999999999999999998742        1222234567899999999999999999999987


Q ss_pred             HHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHH
Q 010063          402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  481 (519)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  481 (519)
                      ..        |.....+..+|.++...|++++|..++++++..        .+.....+..++.++...|+.++|..+.+
T Consensus       164 ~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  227 (234)
T TIGR02521       164 ID--------PQRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRYGA  227 (234)
T ss_pred             hC--------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            52        333457788999999999999999999999885        12334555678899999999999999887


Q ss_pred             HHHH
Q 010063          482 EALY  485 (519)
Q Consensus       482 ~a~~  485 (519)
                      .+..
T Consensus       228 ~~~~  231 (234)
T TIGR02521       228 QLQK  231 (234)
T ss_pred             HHHh
Confidence            7654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.74  E-value=1.7e-15  Score=154.92  Aligned_cols=293  Identities=14%  Similarity=0.086  Sum_probs=229.7

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHH
Q 010063          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD  203 (519)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  203 (519)
                      .+..|.+.|++++|.+.|++.             .+....+|+.+...|...|++++|..+|+++....     -.|+..
T Consensus       265 Li~~y~k~g~~~~A~~vf~~m-------------~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g-----~~pd~~  326 (697)
T PLN03081        265 LIDMYSKCGDIEDARCVFDGM-------------PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG-----VSIDQF  326 (697)
T ss_pred             HHHHHHHCCCHHHHHHHHHhC-------------CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----CCCCHH
Confidence            456778889999999888764             22346789999999999999999999999876532     123333


Q ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (519)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (519)
                       .+..+...+...|++++|...+..+++..   ..+    ...++..+...|.+.|++++|...|++..+          
T Consensus       327 -t~~~ll~a~~~~g~~~~a~~i~~~m~~~g---~~~----d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------  388 (697)
T PLN03081        327 -TFSIMIRIFSRLALLEHAKQAHAGLIRTG---FPL----DIVANTALVDLYSKWGRMEDARNVFDRMPR----------  388 (697)
T ss_pred             -HHHHHHHHHHhccchHHHHHHHHHHHHhC---CCC----CeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------
Confidence             48889999999999999999999887641   112    245678899999999999999999987632          


Q ss_pred             hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010063          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (519)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (519)
                      + ...+|+.+...|...|+.++|+++|+++.+.      .-.|+. .++..+...+...|..++|.++|+.+.+...   
T Consensus       389 ~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~------g~~Pd~-~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g---  457 (697)
T PLN03081        389 K-NLISWNALIAGYGNHGRGTKAVEMFERMIAE------GVAPNH-VTFLAVLSACRYSGLSEQGWEIFQSMSENHR---  457 (697)
T ss_pred             C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC---
Confidence            1 2468999999999999999999999998763      123443 4688888999999999999999999876421   


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (519)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (519)
                       ..|+    ...|..+...|.+.|++++|.+++++.         +..|+ ..+|..+...+...|+.+.|...+++.+.
T Consensus       458 -~~p~----~~~y~~li~~l~r~G~~~eA~~~~~~~---------~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~  522 (697)
T PLN03081        458 -IKPR----AMHYACMIELLGREGLLDEAYAMIRRA---------PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYG  522 (697)
T ss_pred             -CCCC----ccchHhHHHHHHhcCCHHHHHHHHHHC---------CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence             1222    235678999999999999999988653         12333 35688899999999999999999888765


Q ss_pred             HHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063          444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (519)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (519)
                      +        .|.....|..++.+|...|++++|.+.+++..+.
T Consensus       523 ~--------~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        523 M--------GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             C--------CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            2        3444557888999999999999999999988764

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.74  E-value=1.2e-15  Score=123.55  Aligned_cols=206  Identities=17%  Similarity=0.143  Sum_probs=175.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (519)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (519)
                      .....+...+|.-|...|++..|..-++++++.        +|....++..++.+|...|+.+.|.+.|++|+.+     
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-----   98 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL-----   98 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----
Confidence            355777889999999999999999999999997        6778899999999999999999999999999995     


Q ss_pred             CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010063          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  401 (519)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  401 (519)
                         +|....+++|.|..++.+|++++|...|++|+..        |.-+....++.|+|.|..+.|+++.|.++|+++++
T Consensus        99 ---~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~--------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~  167 (250)
T COG3063          99 ---APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD--------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE  167 (250)
T ss_pred             ---CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC--------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence               6778889999999999999999999999999874        55555567789999999999999999999999998


Q ss_pred             HHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHH
Q 010063          402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  481 (519)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  481 (519)
                      +        +|........++..+...|++..|..+++.....        .+..+.++.....+-...|+-+.|-++=.
T Consensus       168 ~--------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~--------~~~~A~sL~L~iriak~~gd~~~a~~Y~~  231 (250)
T COG3063         168 L--------DPQFPPALLELARLHYKAGDYAPARLYLERYQQR--------GGAQAESLLLGIRIAKRLGDRAAAQRYQA  231 (250)
T ss_pred             h--------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc--------ccccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            5        3444566778999999999999999998876551        22455666666677778899998888877


Q ss_pred             HHHHHH
Q 010063          482 EALYIR  487 (519)
Q Consensus       482 ~a~~~~  487 (519)
                      +....+
T Consensus       232 qL~r~f  237 (250)
T COG3063         232 QLQRLF  237 (250)
T ss_pred             HHHHhC
Confidence            666544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.74  E-value=1.2e-15  Score=123.39  Aligned_cols=204  Identities=18%  Similarity=0.140  Sum_probs=172.7

Q ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (519)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (519)
                      ...+.+...||.-|...|++..|...+++|++.        +|....++..+|.+|...|+.+.|.+.|++|+.+     
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-----   98 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL-----   98 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----
Confidence            345667889999999999999999999999986        4666888999999999999999999999999997     


Q ss_pred             CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010063          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (519)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (519)
                         +|....+++|.|..++.+|++++|...|++|+.      .+.-+....++.|+|.+..+.|+++.|.++|+++++..
T Consensus        99 ---~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d  169 (250)
T COG3063          99 ---APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD  169 (250)
T ss_pred             ---CCCccchhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence               677889999999999999999999999999998      35566778899999999999999999999999999983


Q ss_pred             HhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHH
Q 010063          360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  439 (519)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  439 (519)
                             ++.+   .....++..+...|++..|..++++....        .+..+.++.....+-...|+-+.|.++-.
T Consensus       170 -------p~~~---~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~--------~~~~A~sL~L~iriak~~gd~~~a~~Y~~  231 (250)
T COG3063         170 -------PQFP---PALLELARLHYKAGDYAPARLYLERYQQR--------GGAQAESLLLGIRIAKRLGDRAAAQRYQA  231 (250)
T ss_pred             -------cCCC---hHHHHHHHHHHhcccchHHHHHHHHHHhc--------ccccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence                   2222   23467899999999999999998875442        22445666666777788899988888766


Q ss_pred             HHHH
Q 010063          440 ICLD  443 (519)
Q Consensus       440 ~al~  443 (519)
                      +...
T Consensus       232 qL~r  235 (250)
T COG3063         232 QLQR  235 (250)
T ss_pred             HHHH
Confidence            6554

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.74  E-value=9.7e-15  Score=125.62  Aligned_cols=332  Identities=14%  Similarity=0.045  Sum_probs=252.3

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 010063          166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLV  245 (519)
Q Consensus       166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  245 (519)
                      ..-|.-++...++++|+..+.+.+.....    .......+-.+..+...+|.|++++.+---.+..+...  .+.....
T Consensus        10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~----~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~~   83 (518)
T KOG1941|consen   10 IEKGLQLYQSNQTEKALQVWTKVLEKLSD----LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDFLL   83 (518)
T ss_pred             HHHHHhHhcCchHHHHHHHHHHHHHHHHH----HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence            44466667788888998888776655422    23334456677888899999999988777666666553  3445667


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES-ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (519)
                      .++.+++..+...-++.+++.+-+..+.+-    +... ..-......+|..+..++.++++++.|+.|+++.....  +
T Consensus        84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~--D  157 (518)
T KOG1941|consen   84 EAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNND--D  157 (518)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC--C
Confidence            889999999999999999988887776542    1111 22235666799999999999999999999999986652  2


Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010063          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (519)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (519)
                      ..-...++..||.++....++++|.-+..+|.++.......+-.......+++.++..+..+|+...|.++.+++.++.-
T Consensus       158 ~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal  237 (518)
T KOG1941|consen  158 AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL  237 (518)
T ss_pred             ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence            22345678899999999999999999999999998774222222334456678899999999999999999999999987


Q ss_pred             HhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHH-----HHHH
Q 010063          405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE-----AEKL  479 (519)
Q Consensus       405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~  479 (519)
                      ...  +.+..+..+..+|++|...|+.+.|..-|++|..+....  .+......++...|.++....-..+     |+++
T Consensus       238 ~~G--dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~--gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~  313 (518)
T KOG1941|consen  238 QHG--DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL--GDRMGQVEALDGAAKCLETLRLQNKICNCRALEF  313 (518)
T ss_pred             HhC--ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHhhcccccchhHH
Confidence            763  677788899999999999999999999999999988765  3344556677777887776554444     9999


Q ss_pred             HHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhc
Q 010063          480 VLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLY  517 (519)
Q Consensus       480 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~  517 (519)
                      -++++++..++ |..+. +  ..+...++.+|..+|+-
T Consensus       314 n~r~levA~~I-G~K~~-v--lK~hcrla~iYrs~gl~  347 (518)
T KOG1941|consen  314 NTRLLEVASSI-GAKLS-V--LKLHCRLASIYRSKGLQ  347 (518)
T ss_pred             HHHHHHHHHHh-hhhHH-H--HHHHHHHHHHHHhccch
Confidence            99999999876 43333 2  24556889999888753

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.73  E-value=4.1e-14  Score=133.48  Aligned_cols=336  Identities=14%  Similarity=0.048  Sum_probs=227.4

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      ....+..+...|+.+.+...+.++.....       ............+..+...|++++|...+++++...    ++++
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----P~~~   77 (355)
T cd05804           9 HAAAALLLLLGGERPAAAAKAAAAAQALA-------ARATERERAHVEALSAWIAGDLPKALALLEQLLDDY----PRDL   77 (355)
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHhc-------cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCcH
Confidence            44456677778899999888877776622       233455667778999999999999999999988764    2222


Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (519)
                         .++.. +..+...|++..+.....+++..    ..+.++.....+..+|.++...|++++|+..+++++++      
T Consensus        78 ---~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------  143 (355)
T cd05804          78 ---LALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL------  143 (355)
T ss_pred             ---HHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------
Confidence               22333 55555566555555555555443    23456666778888999999999999999999999987      


Q ss_pred             CCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (519)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (519)
                        .|.....+..+|.++...|++++|+.++++++.....    ........+..+|.++...|++++|+..+++++..  
T Consensus       144 --~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~--  215 (355)
T cd05804         144 --NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP--  215 (355)
T ss_pred             --CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--
Confidence              3445678899999999999999999999999886321    11223446778999999999999999999998543  


Q ss_pred             hhccCCCCchHHHHH--HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH
Q 010063          361 DSNYMSLDDSIMENM--RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  438 (519)
Q Consensus       361 ~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  438 (519)
                           .+........  ...+...+...|....+... +.......... +. +.....-...+.++...|+.++|...+
T Consensus       216 -----~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L  287 (355)
T cd05804         216 -----SAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHF-PD-HGLAFNDLHAALALAGAGDKDALDKLL  287 (355)
T ss_pred             -----ccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhc-Cc-ccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence                 1111111111  11233344445544433333 22222221111 11 112222235788889999999999999


Q ss_pred             HHHHHHHHHhc-CCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcc
Q 010063          439 RICLDIMTKTV-GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV  498 (519)
Q Consensus       439 ~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  498 (519)
                      +......+... .......+......+.++...|++++|...+..++.+...+ |..|.+.
T Consensus       288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~-ggs~aq~  347 (355)
T cd05804         288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARI-GGSHAQR  347 (355)
T ss_pred             HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CCcHHHH
Confidence            98877665410 01122345566778999999999999999999999999665 4444443

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.72  E-value=3.5e-15  Score=131.95  Aligned_cols=204  Identities=15%  Similarity=0.123  Sum_probs=168.1

Q ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (519)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (519)
                      ......+..+|..+...|++++|+..+++++..        .|....++..+|.++...|++++|+..++++++.     
T Consensus        28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----   94 (234)
T TIGR02521        28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL-----   94 (234)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----
Confidence            445667899999999999999999999999875        2334677888999999999999999999999986     


Q ss_pred             CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010063          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (519)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (519)
                         .|.....+.++|.++...|++++|+..+++++...      ..+.....+.++|.++...|++++|...+++++...
T Consensus        95 ---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  165 (234)
T TIGR02521        95 ---NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID  165 (234)
T ss_pred             ---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence               34445788899999999999999999999998731      234445578889999999999999999999998862


Q ss_pred             HhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHH
Q 010063          360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  439 (519)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  439 (519)
                             ++.   ...+..+|.++...|++++|..++++++...        +.....+..++.++...|+.++|..+.+
T Consensus       166 -------~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~  227 (234)
T TIGR02521       166 -------PQR---PESLLELAELYYLRGQYKDARAYLERYQQTY--------NQTAESLWLGIRIARALGDVAAAQRYGA  227 (234)
T ss_pred             -------cCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence                   233   2356789999999999999999999998751        2223455678899999999999999877


Q ss_pred             HHHH
Q 010063          440 ICLD  443 (519)
Q Consensus       440 ~al~  443 (519)
                      .+..
T Consensus       228 ~~~~  231 (234)
T TIGR02521       228 QLQK  231 (234)
T ss_pred             HHHh
Confidence            6654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.72  E-value=1.1e-14  Score=131.85  Aligned_cols=227  Identities=12%  Similarity=0.092  Sum_probs=165.6

Q ss_pred             cCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010063          175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV  254 (519)
Q Consensus       175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  254 (519)
                      .+..+.++..+.+++...   ..+++..+..++.+|.+|...|++++|+..|++++++        .|....++..+|.+
T Consensus        39 ~~~~e~~i~~~~~~l~~~---~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~  107 (296)
T PRK11189         39 TLQQEVILARLNQILASR---DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIY  107 (296)
T ss_pred             chHHHHHHHHHHHHHccc---cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHH
Confidence            345566777777766543   2334556777999999999999999999999999986        24446789999999


Q ss_pred             HhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 010063          255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCS  334 (519)
Q Consensus       255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  334 (519)
                      +...|++++|+..|++++++        .|....++.++|.++...|++++|+..++++++.     .++++.. ..+  
T Consensus       108 ~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~~~-~~~--  171 (296)
T PRK11189        108 LTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDPYR-ALW--  171 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH-HHH--
Confidence            99999999999999999987        5667789999999999999999999999999985     2333321 112  


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhH
Q 010063          335 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF  414 (519)
Q Consensus       335 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  414 (519)
                       ..+....+++++|+..+.++....      .++.  .     ..+.++...|+..++ ..++.+.+...... ...+..
T Consensus       172 -~~l~~~~~~~~~A~~~l~~~~~~~------~~~~--~-----~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~~  235 (296)
T PRK11189        172 -LYLAESKLDPKQAKENLKQRYEKL------DKEQ--W-----GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAERL  235 (296)
T ss_pred             -HHHHHccCCHHHHHHHHHHHHhhC------Cccc--c-----HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHHH
Confidence             223455789999999998766431      1111  1     134555567777554 24444332211100 012445


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063          415 VTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (519)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (519)
                      ..++..+|.++...|++++|+.+|+++++.
T Consensus       236 ~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~  265 (296)
T PRK11189        236 CETYFYLAKYYLSLGDLDEAAALFKLALAN  265 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            679999999999999999999999999984

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.72  E-value=6.1e-14  Score=132.74  Aligned_cols=302  Identities=11%  Similarity=0.059  Sum_probs=208.2

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH-HHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDI-IALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (519)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (519)
                      ...+..|......||+++|.+...++-+.           .+.+..++. .+.+....|+++.|..++.++.+..    +
T Consensus        85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~-----------~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~----~  149 (398)
T PRK10747         85 RKQTEQALLKLAEGDYQQVEKLMTRNADH-----------AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA----D  149 (398)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----------ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----C
Confidence            33566777778899999999766654332           112333344 4666699999999999999987643    2


Q ss_pred             CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010063          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (519)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (519)
                      + ..... ....+.++...|++++|...+++..+.     .   |....++..++.+|...|++++|...+.+..+..  
T Consensus       150 ~-~~~~~-~l~~a~l~l~~g~~~~Al~~l~~~~~~-----~---P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~--  217 (398)
T PRK10747        150 N-DQLPV-EITRVRIQLARNENHAARHGVDKLLEV-----A---PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH--  217 (398)
T ss_pred             c-chHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhc-----C---CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--
Confidence            2 22222 334588999999999999999998775     2   3335667788999999999999999998887642  


Q ss_pred             hcCCCChhhHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 010063          278 NRGTESADLVL-----PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY  352 (519)
Q Consensus       278 ~~~~~~~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  352 (519)
                         ..++....     ++..+........+    ...+.+..+...+    ..+........++..+...|+.++|...+
T Consensus       218 ---~~~~~~~~~l~~~a~~~l~~~~~~~~~----~~~l~~~w~~lp~----~~~~~~~~~~~~A~~l~~~g~~~~A~~~L  286 (398)
T PRK10747        218 ---VGDEEHRAMLEQQAWIGLMDQAMADQG----SEGLKRWWKNQSR----KTRHQVALQVAMAEHLIECDDHDTAQQII  286 (398)
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhCCH----HHhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence               11122111     22222221222222    2223332222111    12344556778999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHH
Q 010063          353 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV  432 (519)
Q Consensus       353 ~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  432 (519)
                      +++++.       .+ ++....     .......++.+++++..++.++        .+|+....+..+|.++...|+++
T Consensus       287 ~~~l~~-------~~-~~~l~~-----l~~~l~~~~~~~al~~~e~~lk--------~~P~~~~l~l~lgrl~~~~~~~~  345 (398)
T PRK10747        287 LDGLKR-------QY-DERLVL-----LIPRLKTNNPEQLEKVLRQQIK--------QHGDTPLLWSTLGQLLMKHGEWQ  345 (398)
T ss_pred             HHHHhc-------CC-CHHHHH-----HHhhccCCChHHHHHHHHHHHh--------hCCCCHHHHHHHHHHHHHCCCHH
Confidence            998873       22 332221     1222345899999998888775        46777778889999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010063          433 EAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  488 (519)
Q Consensus       433 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  488 (519)
                      +|.++|+++++.        .|+. ..+..++.++..+|+.++|..+|++++.+..
T Consensus       346 ~A~~~le~al~~--------~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~  392 (398)
T PRK10747        346 EASLAFRAALKQ--------RPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLTL  392 (398)
T ss_pred             HHHHHHHHHHhc--------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            999999999983        3443 3456899999999999999999999988653

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.72  E-value=4.5e-14  Score=119.87  Aligned_cols=272  Identities=18%  Similarity=0.153  Sum_probs=211.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 010063          166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLV  245 (519)
Q Consensus       166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  245 (519)
                      +.-|.-+.-..+.++|+..|..+++.       +|....+...||+.|...|..+.|+...+..++.-    +-......
T Consensus        39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~-------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp----dlT~~qr~  107 (389)
T COG2956          39 YVKGLNFLLSNQPDKAVDLFLEMLQE-------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP----DLTFEQRL  107 (389)
T ss_pred             HHhHHHHHhhcCcchHHHHHHHHHhc-------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC----CCchHHHH
Confidence            34466677788999999999887753       36677779999999999999999999888665421    11122456


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  325 (519)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  325 (519)
                      .++..+|.-|+..|-++.|+..|....+.        ......++..|..+|....+|++|++..++..++-.+.   ..
T Consensus       108 lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~---~~  176 (389)
T COG2956         108 LALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT---YR  176 (389)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc---ch
Confidence            78889999999999999999999988763        23345688889999999999999999998887763322   34


Q ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010063          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  405 (519)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  405 (519)
                      ..++..+..++..+....+.+.|...+.+|++..++          ...+-..+|.++...|+|+.|++.++.+++-   
T Consensus       177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~----------cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ---  243 (389)
T COG2956         177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKK----------CVRASIILGRVELAKGDYQKAVEALERVLEQ---  243 (389)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc----------ceehhhhhhHHHHhccchHHHHHHHHHHHHh---
Confidence            568888999999999999999999999999987332          2344467999999999999999999998763   


Q ss_pred             hhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010063          406 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  485 (519)
Q Consensus       406 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  485 (519)
                          ++.....+...|..+|..+|+.++....+.++.+...      .+   .....++..-....-.+.|..++.+-+.
T Consensus       244 ----n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~------g~---~~~l~l~~lie~~~G~~~Aq~~l~~Ql~  310 (389)
T COG2956         244 ----NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT------GA---DAELMLADLIELQEGIDAAQAYLTRQLR  310 (389)
T ss_pred             ----ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC------Cc---cHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence                4556678888999999999999999999999887431      12   2234455555556566677766655544

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.71  E-value=8.4e-14  Score=140.32  Aligned_cols=331  Identities=10%  Similarity=0.013  Sum_probs=232.5

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      +...+..+...|++++|+++|+++++.          .|..+.++..++..+...++.++|+..++++....       |
T Consensus       105 llalA~ly~~~gdyd~Aiely~kaL~~----------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d-------p  167 (822)
T PRK14574        105 LASAARAYRNEKRWDQALALWQSSLKK----------DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD-------P  167 (822)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhh----------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC-------c
Confidence            555677888999999999999999988          66677888888999999999999999998876553       3


Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH---------------------------------------------
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLES---------------------------------------------  235 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------------------------------------------  235 (519)
                      .... +..++.++...++..+|+..++++++....                                             
T Consensus       168 ~~~~-~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~  246 (822)
T PRK14574        168 TVQN-YMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAA  246 (822)
T ss_pred             chHH-HHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHH
Confidence            2222 234455555567776788888888775100                                             


Q ss_pred             ------------------------------hc------CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063          236 ------------------------------RY------GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (519)
Q Consensus       236 ------------------------------~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (519)
                                                    ..      .+.++....+....-.++...|++.++++.|+....      
T Consensus       247 a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~------  320 (822)
T PRK14574        247 AEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA------  320 (822)
T ss_pred             HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh------
Confidence                                          00      000001111222222233344444444444443322      


Q ss_pred             CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010063          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (519)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (519)
                       +..+.-..+....|..|...+++++|+.+|++++.-.....  ..+........|-..|...+++++|..++++..+..
T Consensus       321 -~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~--~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~  397 (822)
T PRK14574        321 -EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF--RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT  397 (822)
T ss_pred             -cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc--CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence             12222345677889999999999999999999876321100  112233334678888999999999999999987632


Q ss_pred             H-hhc----cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHH
Q 010063          360 K-DSN----YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA  434 (519)
Q Consensus       360 ~-~~~----~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  434 (519)
                      . ...    .....++........++.++...|++.+|++.+++.+..        .|........+|.++...|.+.+|
T Consensus       398 p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--------aP~n~~l~~~~A~v~~~Rg~p~~A  469 (822)
T PRK14574        398 PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--------APANQNLRIALASIYLARDLPRKA  469 (822)
T ss_pred             CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHH
Confidence            2 000    011234455577788999999999999999999998764        466677888999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcch
Q 010063          435 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVG  499 (519)
Q Consensus       435 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  499 (519)
                      ...++.++.+        +|....+...+|.++..+|++.+|.....++++..     |+++.+.
T Consensus       470 ~~~~k~a~~l--------~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~-----Pe~~~~~  521 (822)
T PRK14574        470 EQELKAVESL--------APRSLILERAQAETAMALQEWHQMELLTDDVISRS-----PEDIPSQ  521 (822)
T ss_pred             HHHHHHHhhh--------CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC-----CCchhHH
Confidence            9999877763        56677788899999999999999999999998866     5566553

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.71  E-value=8.7e-15  Score=132.46  Aligned_cols=228  Identities=14%  Similarity=0.035  Sum_probs=168.0

Q ss_pred             cccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 010063          216 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  295 (519)
Q Consensus       216 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  295 (519)
                      .+..+.++..+.+++....    .+.+..+..++.+|.+|...|++++|+..|++++++        .|....+++++|.
T Consensus        39 ~~~~e~~i~~~~~~l~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~  106 (296)
T PRK11189         39 TLQQEVILARLNQILASRD----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGI  106 (296)
T ss_pred             chHHHHHHHHHHHHHcccc----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHH
Confidence            4566778888887775321    233455788999999999999999999999999986        5667899999999


Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHH
Q 010063          296 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM  375 (519)
Q Consensus       296 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  375 (519)
                      ++...|++++|+..|++++++        +|....++.++|.++...|++++|++.++++++.       .|+++.. ..
T Consensus       107 ~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-------~P~~~~~-~~  170 (296)
T PRK11189        107 YLTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-------DPNDPYR-AL  170 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCCHHH-HH
Confidence            999999999999999999985        4666778999999999999999999999999987       3444421 11


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 010063          376 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS  455 (519)
Q Consensus       376 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  455 (519)
                      +   ..+....+++++|+..+.++....       ++..   + ..+.++...|+..++ ..++.+........ ...|.
T Consensus       171 ~---~~l~~~~~~~~~A~~~l~~~~~~~-------~~~~---~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~  234 (296)
T PRK11189        171 W---LYLAESKLDPKQAKENLKQRYEKL-------DKEQ---W-GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAER  234 (296)
T ss_pred             H---HHHHHccCCHHHHHHHHHHHHhhC-------Cccc---c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHH
Confidence            1   223455788999999998765321       1111   1 124455556666544 23444432111000 01244


Q ss_pred             hhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       456 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                      ...+++++|.++...|++++|+.+|++++++.
T Consensus       235 ~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        235 LCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            56789999999999999999999999999754

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.70  E-value=6.6e-14  Score=134.48  Aligned_cols=280  Identities=13%  Similarity=0.079  Sum_probs=211.8

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCc
Q 010063          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (519)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (519)
                      .....+..+-.+|+.+++....-.|-.+          .|.....|..++.....+|++++|.-+|.++++..       
T Consensus       175 ay~tL~~IyEqrGd~eK~l~~~llAAHL----------~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-------  237 (895)
T KOG2076|consen  175 AYYTLGEIYEQRGDIEKALNFWLLAAHL----------NPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-------  237 (895)
T ss_pred             hHHHHHHHHHHcccHHHHHHHHHHHHhc----------CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-------
Confidence            3667788899999999999888777655          56666899999999999999999999999999875       


Q ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (519)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (519)
                      |......+..+.+|.+.|+...|...|.+.+.....   .+-..........+..+...++-+.|.+.++.++....   
T Consensus       238 p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~---~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~---  311 (895)
T KOG2076|consen  238 PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP---VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK---  311 (895)
T ss_pred             CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc---hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc---
Confidence            333455778899999999999999999999887421   11123344455668888888888999999999987321   


Q ss_pred             CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----------------------HHH-------------H-----
Q 010063          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK----------------------IYT-------------K-----  319 (519)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------------~~~-------------~-----  319 (519)
                         .......++.++.++.....++.|.........                      ++.             .     
T Consensus       312 ---~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~  388 (895)
T KOG2076|consen  312 ---DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV  388 (895)
T ss_pred             ---ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence               222334556677788888888887766554433                      000             0     


Q ss_pred             ----------------hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH
Q 010063          320 ----------------VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL  383 (519)
Q Consensus       320 ----------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~  383 (519)
                                      .......+....+..++..+...|++.+|+.++.......       +.  .....|..+|.||
T Consensus       389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~-------~~--~~~~vw~~~a~c~  459 (895)
T KOG2076|consen  389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE-------GY--QNAFVWYKLARCY  459 (895)
T ss_pred             cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc-------cc--cchhhhHHHHHHH
Confidence                            0000112345568889999999999999999998876541       11  1155789999999


Q ss_pred             HHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 010063          384 HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  442 (519)
Q Consensus       384 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (519)
                      ..+|.+++|++.|++++..        .|+...+...|+.++..+|++++|.+.+++..
T Consensus       460 ~~l~e~e~A~e~y~kvl~~--------~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  460 MELGEYEEAIEFYEKVLIL--------APDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             HHHhhHHHHHHHHHHHHhc--------CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            9999999999999999984        56677889999999999999998888777654

>PLN03077 Protein ECB2; Provisional

Probab=99.70  E-value=2.7e-14  Score=149.74  Aligned_cols=153  Identities=14%  Similarity=0.071  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 010063          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  410 (519)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  410 (519)
                      +|+.+...|...|+.++|+++|+++.+.     ...|+..    ++..+...+.+.|+.++|..+|++..+..     ..
T Consensus       556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~-----g~~Pd~~----T~~~ll~a~~~~g~v~ea~~~f~~M~~~~-----gi  621 (857)
T PLN03077        556 SWNILLTGYVAHGKGSMAVELFNRMVES-----GVNPDEV----TFISLLCACSRSGMVTQGLEYFHSMEEKY-----SI  621 (857)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCCcc----cHHHHHHHHhhcChHHHHHHHHHHHHHHh-----CC
Confidence            3445555555555555555555554432     1122221    22334445555555555555555544221     01


Q ss_pred             ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 010063          411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  490 (519)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  490 (519)
                      .|+ ...|..+..++.+.|++++|.+.+++.-         ..|+ ..+|..|-..+...|+.+.|....++.+++    
T Consensus       622 ~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~---------~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l----  686 (857)
T PLN03077        622 TPN-LKHYACVVDLLGRAGKLTEAYNFINKMP---------ITPD-PAVWGALLNACRIHRHVELGELAAQHIFEL----  686 (857)
T ss_pred             CCc-hHHHHHHHHHHHhCCCHHHHHHHHHHCC---------CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhh----
Confidence            222 2445555666666666666665555431         1122 223444444555556666555555555443    


Q ss_pred             cCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063          491 FGKDSLPVGKLFCFVLFGLVWFCLLLYK  518 (519)
Q Consensus       491 ~~~~~~~~~~~~~~~~l~~~~~~lg~~k  518 (519)
                       .++++     ..+..|+++|...|+|.
T Consensus       687 -~p~~~-----~~y~ll~n~ya~~g~~~  708 (857)
T PLN03077        687 -DPNSV-----GYYILLCNLYADAGKWD  708 (857)
T ss_pred             -CCCCc-----chHHHHHHHHHHCCChH
Confidence             23333     34778899999888874

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.69  E-value=3.3e-13  Score=143.45  Aligned_cols=306  Identities=13%  Similarity=0.072  Sum_probs=228.7

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHH
Q 010063          123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL  202 (519)
Q Consensus       123 ~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  202 (519)
                      ..+..+...|++++|..+++++++...     .........+...+|.++...|++++|...++++.......+.... .
T Consensus       457 ~~a~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~-~  530 (903)
T PRK04841        457 LRAQVAINDGDPEEAERLAELALAELP-----LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHY-A  530 (903)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcCC-----CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHH-H
Confidence            355667889999999999999987411     1112234556788999999999999999999999988776544333 3


Q ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (519)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (519)
                      ..++..+|.++...|++++|...+++++...........+.....+..+|.++...|++++|...+.+++.+.....   
T Consensus       531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---  607 (903)
T PRK04841        531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---  607 (903)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---
Confidence            44678899999999999999999999999987754333343445567789999999999999999999999876432   


Q ss_pred             ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV-GMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (519)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (519)
                      .......+..+|.++...|++++|...+.++..+.....  ..... ..........+...|+.+.|...+.......  
T Consensus       608 ~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~--  683 (903)
T PRK04841        608 PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGR--YHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE--  683 (903)
T ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc--ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC--
Confidence            223456777899999999999999999999988765431  11111 1111112344556899999988876644310  


Q ss_pred             hccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010063          362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  441 (519)
Q Consensus       362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (519)
                          .............++.++...|++++|...+++++...+...  .....+.++..+|.++...|+.++|...+.++
T Consensus       684 ----~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g--~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A  757 (903)
T PRK04841        684 ----FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLR--LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA  757 (903)
T ss_pred             ----CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                111112223346789999999999999999999999865542  34466778889999999999999999999999


Q ss_pred             HHHHHH
Q 010063          442 LDIMTK  447 (519)
Q Consensus       442 l~~~~~  447 (519)
                      +++...
T Consensus       758 l~la~~  763 (903)
T PRK04841        758 LKLANR  763 (903)
T ss_pred             HHHhCc
Confidence            998754

>PLN03077 Protein ECB2; Provisional

Probab=99.69  E-value=5.8e-14  Score=147.25  Aligned_cols=353  Identities=11%  Similarity=0.028  Sum_probs=210.0

Q ss_pred             CCCchhhhhhhhhhhhhhccccCcchHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH-------------------
Q 010063           88 FSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAV-------------------  148 (519)
Q Consensus        88 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~-------------------  148 (519)
                      +...++...+..+++....+         ...........+.+.|++++|+++|.++...-                   
T Consensus       232 y~k~g~~~~A~~lf~~m~~~---------d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g  302 (857)
T PLN03077        232 YVKCGDVVSARLVFDRMPRR---------DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG  302 (857)
T ss_pred             HhcCCCHHHHHHHHhcCCCC---------CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence            33444455556665554421         11224445566778888888888888765420                   


Q ss_pred             -----HHHH--hcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHH
Q 010063          149 -----KEQI--NAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEK  221 (519)
Q Consensus       149 -----~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  221 (519)
                           ++..  ...........+++.+...|...|++++|.++|+++..         ++ ...|+.+...|.+.|++++
T Consensus       303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---------~d-~~s~n~li~~~~~~g~~~~  372 (857)
T PLN03077        303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---------KD-AVSWTAMISGYEKNGLPDK  372 (857)
T ss_pred             ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---------CC-eeeHHHHHHHHHhCCCHHH
Confidence                 0000  00001122345666677777777777777777766421         11 1236677777777777777


Q ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCC
Q 010063          222 SMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG  301 (519)
Q Consensus       222 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  301 (519)
                      |+.+|++..+.   ...++    ..++..+-..+...|++++|.+++..+.+.       .......+++.+...|.+.|
T Consensus       373 A~~lf~~M~~~---g~~Pd----~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-------g~~~~~~~~n~Li~~y~k~g  438 (857)
T PLN03077        373 ALETYALMEQD---NVSPD----EITIASVLSACACLGDLDVGVKLHELAERK-------GLISYVVVANALIEMYSKCK  438 (857)
T ss_pred             HHHHHHHHHHh---CCCCC----ceeHHHHHHHHhccchHHHHHHHHHHHHHh-------CCCcchHHHHHHHHHHHHcC
Confidence            77777765432   11222    223444445666677777777777666543       12233567778888888888


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHH-------
Q 010063          302 KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN-------  374 (519)
Q Consensus       302 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-------  374 (519)
                      ++++|.+.|++..+          ++ ..+|+.+...|...|++++|+.+|+++...      ..|+...+..       
T Consensus       439 ~~~~A~~vf~~m~~----------~d-~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~------~~pd~~t~~~lL~a~~~  501 (857)
T PLN03077        439 CIDKALEVFHNIPE----------KD-VISWTSIIAGLRLNNRCFEALIFFRQMLLT------LKPNSVTLIAALSACAR  501 (857)
T ss_pred             CHHHHHHHHHhCCC----------CC-eeeHHHHHHHHHHCCCHHHHHHHHHHHHhC------CCCCHhHHHHHHHHHhh
Confidence            88888888876422          22 236777888888888888888888887532      1233222211       


Q ss_pred             ------------------------HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccC
Q 010063          375 ------------------------MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN  430 (519)
Q Consensus       375 ------------------------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  430 (519)
                                              ..+.+...|.+.|+.++|...|++.           .+ ...+|+.+...|...|+
T Consensus       502 ~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----------~~-d~~s~n~lI~~~~~~G~  569 (857)
T PLN03077        502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----------EK-DVVSWNILLTGYVAHGK  569 (857)
T ss_pred             hchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----------CC-ChhhHHHHHHHHHHcCC
Confidence                                    1234557777788888887777653           11 23567778888888888


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHH
Q 010063          431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLV  510 (519)
Q Consensus       431 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~  510 (519)
                      .++|+++|++..+.      ...|+. .++..+-..+...|+.++|..+|++..+..     .-.|+.   ..+..+..+
T Consensus       570 ~~~A~~lf~~M~~~------g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~-----gi~P~~---~~y~~lv~~  634 (857)
T PLN03077        570 GSMAVELFNRMVES------GVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKY-----SITPNL---KHYACVVDL  634 (857)
T ss_pred             HHHHHHHHHHHHHc------CCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHh-----CCCCch---HHHHHHHHH
Confidence            88888888876652      112332 345556667777888888888887776432     112322   335556666


Q ss_pred             HHHhhhc
Q 010063          511 WFCLLLY  517 (519)
Q Consensus       511 ~~~lg~~  517 (519)
                      +.+.|+.
T Consensus       635 l~r~G~~  641 (857)
T PLN03077        635 LGRAGKL  641 (857)
T ss_pred             HHhCCCH
Confidence            6666653

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.69  E-value=7.1e-15  Score=134.46  Aligned_cols=208  Identities=14%  Similarity=0.144  Sum_probs=181.1

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      -+..|..+++.|+..+|.-.|+.++..          +|.++++|..||.+....++-..|+..+++++++.       |
T Consensus       288 Pf~eG~~lm~nG~L~~A~LafEAAVkq----------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-------P  350 (579)
T KOG1125|consen  288 PFKEGCNLMKNGDLSEAALAFEAAVKQ----------DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-------P  350 (579)
T ss_pred             hHHHHHHHHhcCCchHHHHHHHHHHhh----------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-------C
Confidence            355788899999999999999999988          99999999999999999999999999999999875       6


Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH-----------hcCC----CC------------------H--HHH
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLES-----------RYGK----TS------------------I--LLV  245 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~----~~------------------~--~~~  245 (519)
                      ....++..||..|...|.-.+|+.++.+-+.....           ..+.    .+                  +  .-.
T Consensus       351 ~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dp  430 (579)
T KOG1125|consen  351 TNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDP  430 (579)
T ss_pred             ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCCh
Confidence            66778999999999999999999999887654200           0000    00                  0  124


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  325 (519)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  325 (519)
                      .+...||.+|...|+|++|+++|+.|+..        .|.....|+.||-.+..-.+.++|+..|++|+++        .
T Consensus       431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--------q  494 (579)
T KOG1125|consen  431 DVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--------Q  494 (579)
T ss_pred             hHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--------C
Confidence            56778999999999999999999999986        6788899999999999999999999999999996        5


Q ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (519)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (519)
                      |...++.+|||..++.+|.|++|.++|-.|+.+.++
T Consensus       495 P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  495 PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            888899999999999999999999999999999876

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=9.6e-14  Score=121.68  Aligned_cols=299  Identities=14%  Similarity=0.076  Sum_probs=231.5

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHH
Q 010063          123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL  202 (519)
Q Consensus       123 ~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  202 (519)
                      ..+....-.++...|...+--+-.        ...-+.....+..+|.+++..|++++|+..|+++..+.       |..
T Consensus       201 ika~Aq~~~~~hs~a~~t~l~le~--------~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-------py~  265 (564)
T KOG1174|consen  201 IKALAQMFNFKHSDASQTFLMLHD--------NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-------PDN  265 (564)
T ss_pred             HHHHHHHHhcccchhhhHHHHHHh--------hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-------hhh
Confidence            344444555555555554332211        22256778889999999999999999999999987654       777


Q ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (519)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (519)
                      ....-..|..+...|+++.-..+....+...+.        ...-++--+...+...++..|+.+-+++++.        
T Consensus       266 i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~--------ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------  329 (564)
T KOG1174|consen  266 VEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY--------TASHWFVHAQLLYDEKKFERALNFVEKCIDS--------  329 (564)
T ss_pred             hhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc--------chhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------
Confidence            777778888899999998877777666655321        1333445577788899999999999999986        


Q ss_pred             ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (519)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (519)
                      .+.....+...|.++...|+.++|+-.|+.|..+        .|....+|..|-..|...|++.||......+++.+...
T Consensus       330 ~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s  401 (564)
T KOG1174|consen  330 EPRNHEALILKGRLLIALERHTQAVIAFRTAQML--------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS  401 (564)
T ss_pred             CcccchHHHhccHHHHhccchHHHHHHHHHHHhc--------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc
Confidence            5556788888999999999999999999999886        36677899999999999999999999999999886542


Q ss_pred             ccCCCCchHHHHHHHHHH-HHHHH-cCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 010063          363 NYMSLDDSIMENMRIDLA-ELLHI-VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  440 (519)
Q Consensus       363 ~~~~~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  440 (519)
                                +.++..+| .++.. ----++|..++++++.+        .|....+-..+|.++...|.+..++.++++
T Consensus       402 ----------A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~  463 (564)
T KOG1174|consen  402 ----------ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--------NPIYTPAVNLIAELCQVEGPTKDIIKLLEK  463 (564)
T ss_pred             ----------hhhhhhhcceeeccCchhHHHHHHHHHhhhcc--------CCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence                      33434443 33332 22347899999998874        677788888999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          441 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       441 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                      .+..+        ++ ......||.++...+.+++|.++|..|+.+.
T Consensus       464 ~L~~~--------~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d  501 (564)
T KOG1174|consen  464 HLIIF--------PD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQD  501 (564)
T ss_pred             HHhhc--------cc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            99853        22 2457889999999999999999999998753

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=1.2e-14  Score=127.40  Aligned_cols=291  Identities=15%  Similarity=0.077  Sum_probs=226.3

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhc
Q 010063          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (519)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (519)
                      .+.......+..++...+|..|+..+..|+++          .|..+..|.+.+.+++..|+|++|.-..+...++... 
T Consensus        47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~----------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-  115 (486)
T KOG0550|consen   47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDM----------CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-  115 (486)
T ss_pred             HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHh----------CccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-
Confidence            44555777888899999999999999999998          7777888999999999999999999988887766422 


Q ss_pred             CCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHH--------HHHHHhcCC--CCHHHHHHHHHHHHHHhhcCCHHHHH
Q 010063          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVI--------NVLESRYGK--TSILLVTSLLGMAKVLGSIGRAKKAV  265 (519)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~  265 (519)
                            ........+.++...++..+|...++..-        ...+.....  ..|........-+.|+...|++++|.
T Consensus       116 ------~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~  189 (486)
T KOG0550|consen  116 ------FSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ  189 (486)
T ss_pred             ------ccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence                  22245566777777777777766554211        111111111  12444556667789999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC----CCChhHHHHHHHHHHHHHH
Q 010063          266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG----ENDGRVGMAMCSLAHAKCA  341 (519)
Q Consensus       266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~  341 (519)
                      ..--..+++        ++....++..-|.+++..++.+.|+..|++++.+-.....    ...+.....+..-|.-.++
T Consensus       190 ~ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk  261 (486)
T KOG0550|consen  190 SEAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK  261 (486)
T ss_pred             HHHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh
Confidence            887777765        4556788888999999999999999999999986322110    0123455667777899999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHH
Q 010063          342 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNL  421 (519)
Q Consensus       342 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  421 (519)
                      .|++.+|.+.|.+++.+.+      .+....+..|.+.+.+..+.|+..+|+.-.+.++.+        ++....++..-
T Consensus       262 ~G~y~~A~E~Yteal~idP------~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D~syikall~r  327 (486)
T KOG0550|consen  262 NGNYRKAYECYTEALNIDP------SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------DSSYIKALLRR  327 (486)
T ss_pred             ccchhHHHHHHHHhhcCCc------cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------CHHHHHHHHHH
Confidence            9999999999999999833      234455778899999999999999999999999985        56778899999


Q ss_pred             HHHHHhccCHHHHHHHHHHHHHHH
Q 010063          422 AASYSRSKNFVEAERLLRICLDIM  445 (519)
Q Consensus       422 a~~~~~~g~~~~A~~~~~~al~~~  445 (519)
                      |.++..+++|++|.+.|+++++..
T Consensus       328 a~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  328 ANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999998853

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.65  E-value=1.7e-14  Score=132.01  Aligned_cols=267  Identities=16%  Similarity=0.141  Sum_probs=187.6

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 010063          166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLV  245 (519)
Q Consensus       166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  245 (519)
                      +..|..+++.|+..+|.-.|+.++.-.       |..+.+|..||.+....++-..|+..+++++++        +|...
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqd-------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~Nl  353 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQD-------PQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNL  353 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhC-------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccH
Confidence            456888889999999999998887543       888888999999999999999999999999886        35557


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc--CCC-ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC
Q 010063          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR--GTE-SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (519)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (519)
                      .++..||..|...|.-.+|..++.+-+.......  ... .+....    ...-......+..-.++|-.+..   ..  
T Consensus       354 eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~----~~~s~~~~~~l~~i~~~fLeaa~---~~--  424 (579)
T KOG1125|consen  354 EALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE----NTKSFLDSSHLAHIQELFLEAAR---QL--  424 (579)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc----CCcCCCCHHHHHHHHHHHHHHHH---hC--
Confidence            7888999999999999999999888876421000  000 000000    00000000001111222222221   11  


Q ss_pred             CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063          323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (519)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (519)
                       .......+...||.+|...|+|++|+.+|+.|+..       .|.+   ..+|+.||-.+....+.++|+..|++|+++
T Consensus       425 -~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v-------~Pnd---~~lWNRLGAtLAN~~~s~EAIsAY~rALqL  493 (579)
T KOG1125|consen  425 -PTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV-------KPND---YLLWNRLGATLANGNRSEEAISAYNRALQL  493 (579)
T ss_pred             -CCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc-------CCch---HHHHHHhhHHhcCCcccHHHHHHHHHHHhc
Confidence             11134557788999999999999999999999987       3333   456799999999999999999999999986


Q ss_pred             HHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcc--hhHHHHHHHHHHHhcCChHH
Q 010063          403 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS--ISFPMLHLGITLYHLNRDKE  475 (519)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~  475 (519)
                              .|...++.++||..+..+|.|++|.++|-.|+.+.++..+.....  .-.++..|=.++...++.+-
T Consensus       494 --------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~  560 (579)
T KOG1125|consen  494 --------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL  560 (579)
T ss_pred             --------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence                    577889999999999999999999999999999987743322211  11233334455555566553

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=1.8e-13  Score=124.39  Aligned_cols=308  Identities=13%  Similarity=0.101  Sum_probs=235.1

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 010063          166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLV  245 (519)
Q Consensus       166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  245 (519)
                      ..-|...+..|+|+.|+.+|..++.+.       |.....+.+...+|...|+|++|+.--.+..++        .|...
T Consensus         6 k~kgnaa~s~~d~~~ai~~~t~ai~l~-------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--------~p~w~   70 (539)
T KOG0548|consen    6 KEKGNAAFSSGDFETAIRLFTEAIMLS-------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--------NPDWA   70 (539)
T ss_pred             HHHHHhhcccccHHHHHHHHHHHHccC-------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--------CCchh
Confidence            445778889999999999999999876       333445778899999999999999988888775        46778


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc----------------------------------------------
Q 010063          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR----------------------------------------------  279 (519)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------------------------------------------  279 (519)
                      ..|..+|..+.-.|+|++|+..|.+.++......                                              
T Consensus        71 kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~  150 (539)
T KOG0548|consen   71 KGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVK  150 (539)
T ss_pred             hHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHH
Confidence            9999999999999999999999988765311000                                              


Q ss_pred             -----------------------------C-------------------C------------CChh------hHHHHHHH
Q 010063          280 -----------------------------G-------------------T------------ESAD------LVLPLFSL  293 (519)
Q Consensus       280 -----------------------------~-------------------~------------~~~~------~~~~~~~l  293 (519)
                                                   +                   +            +...      .+.....+
T Consensus       151 ~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~l  230 (539)
T KOG0548|consen  151 ILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKEL  230 (539)
T ss_pred             HHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHH
Confidence                                         0                   0            0000      12345668


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHH
Q 010063          294 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME  373 (519)
Q Consensus       294 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  373 (519)
                      |...+...+++.|+..|..++++.         ....-+++.+-+|...|.+.+.+....++++...+.   ..+...+.
T Consensus       231 gnaaykkk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~---rad~klIa  298 (539)
T KOG0548|consen  231 GNAAYKKKDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL---RADYKLIA  298 (539)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH---HHHHHHHH
Confidence            888888888999999999999873         333467788999999999999999888888765542   22233455


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH--hh----------------CCCChhHHHHHHHHHHHHHhccCHHHHH
Q 010063          374 NMRIDLAELLHIVGRGQEGRELLEECLLITEK--YK----------------GKEHPSFVTHLLNLAASYSRSKNFVEAE  435 (519)
Q Consensus       374 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~----------------~~~~~~~~~~~~~la~~~~~~g~~~~A~  435 (519)
                      .+...+|..|...++++.|+.+|++++...+.  ..                .-..|..+.--..-|..++..|+|..|+
T Consensus       299 k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av  378 (539)
T KOG0548|consen  299 KALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAV  378 (539)
T ss_pred             HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHH
Confidence            66667888999999999999999998865432  10                0123444555556699999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhh
Q 010063          436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLL  515 (519)
Q Consensus       436 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg  515 (519)
                      ..|.+++.        ..|+....|.+.|.+|..+|++..|+.-.+.++++        +|..  ...|..=|.++..+.
T Consensus       379 ~~YteAIk--------r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~--~kgy~RKg~al~~mk  440 (539)
T KOG0548|consen  379 KHYTEAIK--------RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNF--IKAYLRKGAALRAMK  440 (539)
T ss_pred             HHHHHHHh--------cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchH--HHHHHHHHHHHHHHH
Confidence            99999887        34888899999999999999999999999999886        2333  345666688888777


Q ss_pred             hcc
Q 010063          516 LYK  518 (519)
Q Consensus       516 ~~k  518 (519)
                      +|.
T Consensus       441 ~yd  443 (539)
T KOG0548|consen  441 EYD  443 (539)
T ss_pred             HHH
Confidence            763

>TIGR00540 hemY_coli hemY protein

Probab=99.65  E-value=4.9e-13  Score=127.35  Aligned_cols=302  Identities=11%  Similarity=-0.004  Sum_probs=203.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCC
Q 010063          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS  241 (519)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  241 (519)
                      +.....-|......|+++.|.+.+.++.+..       |.....+...|.+...+|+++.|..++.++.+..     +++
T Consensus        84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~-------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-----p~~  151 (409)
T TIGR00540        84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHA-------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA-----GND  151 (409)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CcC
Confidence            3344566777889999999999998876543       2222235677899999999999999999987542     221


Q ss_pred             HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (519)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (519)
                      .  ..+....+.++...|++++|...+++.++.        .|....++..++.++...|++++|.+.+.+..+..    
T Consensus       152 ~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~----  217 (409)
T TIGR00540       152 N--ILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG----  217 (409)
T ss_pred             c--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC----
Confidence            1  122334589999999999999999998876        46666888999999999999999999999888641    


Q ss_pred             CCCChhHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010063          322 GENDGRVG-MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL  400 (519)
Q Consensus       322 ~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  400 (519)
                       ..++... ........-....+..+++.+.+.++.....+      ..+.....+..++..+...|++++|.+.+++++
T Consensus       218 -~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l  290 (409)
T TIGR00540       218 -LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPR------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGL  290 (409)
T ss_pred             -CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCH------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence             1222222 11212222223334444455566655544211      111124456789999999999999999999998


Q ss_pred             HHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHH
Q 010063          401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV  480 (519)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  480 (519)
                      +..     ++++..... ..........++.+++.+.++++++.     .|++|. ...+..+|.++.+.|++++|.++|
T Consensus       291 ~~~-----pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~-----~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~l  358 (409)
T TIGR00540       291 KKL-----GDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKN-----VDDKPK-CCINRALGQLLMKHGEFIEAADAF  358 (409)
T ss_pred             hhC-----CCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHh-----CCCChh-HHHHHHHHHHHHHcccHHHHHHHH
Confidence            853     122211101 11223334567888898888888872     234442 267789999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhc
Q 010063          481 LEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLY  517 (519)
Q Consensus       481 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~  517 (519)
                      +++.....      +|+..   .+..+|.++..+|+.
T Consensus       359 e~a~a~~~------~p~~~---~~~~La~ll~~~g~~  386 (409)
T TIGR00540       359 KNVAACKE------QLDAN---DLAMAADAFDQAGDK  386 (409)
T ss_pred             HHhHHhhc------CCCHH---HHHHHHHHHHHcCCH
Confidence            96444321      23331   144889999998875

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.65  E-value=7.5e-13  Score=124.87  Aligned_cols=321  Identities=13%  Similarity=0.048  Sum_probs=213.8

Q ss_pred             ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (519)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (519)
                      +|+.+.++..+|..+...|+.+.+...+.++......    ...........+..+...|++++|...++++++..    
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----   73 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAA----RATERERAHVEALSAWIAGDLPKALALLEQLLDDY----   73 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----
Confidence            5677888999999999999999998888777665532    12233345667889999999999999999998752    


Q ss_pred             CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (519)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (519)
                       ++++   .++.. +..+...|++..+.....+++..    ..+.+|.....+..+|.++...|++++|+..+++++++ 
T Consensus        74 -P~~~---~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-  143 (355)
T cd05804          74 -PRDL---LALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL-  143 (355)
T ss_pred             -CCcH---HHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence             2222   33333 55555666655555555555543    23456777888889999999999999999999999986 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010063          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  397 (519)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (519)
                             .|.....+..+|.++...|++++|+.++++++....      .++......+..+|.++...|++++|+..++
T Consensus       144 -------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~------~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~  210 (355)
T cd05804         144 -------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD------CSSMLRGHNWWHLALFYLERGDYEAALAIYD  210 (355)
T ss_pred             -------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC------CCcchhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence                   344456788899999999999999999999988632      1223334456789999999999999999999


Q ss_pred             HHHHHHHHhhCCCChhHHHH--HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHH
Q 010063          398 ECLLITEKYKGKEHPSFVTH--LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE  475 (519)
Q Consensus       398 ~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  475 (519)
                      +++...     +..+.....  ...+...+...|....+..+ +.+........ +. +.....-...+.++...|+.++
T Consensus       211 ~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~  282 (355)
T cd05804         211 THIAPS-----AESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHF-PD-HGLAFNDLHAALALAGAGDKDA  282 (355)
T ss_pred             HHhccc-----cCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhc-Cc-ccchHHHHHHHHHHhcCCCHHH
Confidence            985421     111112211  11223334444543333332 22222211110 11 2222222467888889999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063          476 AEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYK  518 (519)
Q Consensus       476 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~k  518 (519)
                      |...++......+.. +...............+.++...|+++
T Consensus       283 a~~~L~~l~~~~~~~-~~~~~~~~~~~~~~l~A~~~~~~g~~~  324 (355)
T cd05804         283 LDKLLAALKGRASSA-DDNKQPARDVGLPLAEALYAFAEGNYA  324 (355)
T ss_pred             HHHHHHHHHHHHhcc-CchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence            999999988877652 111111112344556788888888764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=2.8e-13  Score=118.80  Aligned_cols=268  Identities=15%  Similarity=0.143  Sum_probs=218.1

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcC
Q 010063          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK  196 (519)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  196 (519)
                      ....+...++.++..|++++|+..|+++.-+          +|.....+...|..+...|+++.-..+......+.+   
T Consensus       231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~----------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~---  297 (564)
T KOG1174|consen  231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA----------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK---  297 (564)
T ss_pred             cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC----------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh---
Confidence            4455777889999999999999999999877          888889999999999999999998887777666542   


Q ss_pred             CCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010063          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (519)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (519)
                          ..+.-|+.-+...+...++..|+.+-+++++.-        +....++...|..+...|+.++|+-.|+.|..+  
T Consensus       298 ----~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--------~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--  363 (564)
T KOG1174|consen  298 ----YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--------PRNHEALILKGRLLIALERHTQAVIAFRTAQML--  363 (564)
T ss_pred             ----cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--------cccchHHHhccHHHHhccchHHHHHHHHHHHhc--
Confidence                223336667788889999999999999998852        333567778899999999999999999999887  


Q ss_pred             HhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HHHHH-CCCHHHHHHHHHH
Q 010063          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA-HAKCA-NGNAEEAVELYKK  354 (519)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~~~~  354 (519)
                            .|....+|..|-.+|...|++.+|....+.+++.+        +..+.++..+| .++.. -.--++|..++++
T Consensus       364 ------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--------~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek  429 (564)
T KOG1174|consen  364 ------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--------QNSARSLTLFGTLVLFPDPRMREKAKKFAEK  429 (564)
T ss_pred             ------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--------hcchhhhhhhcceeeccCchhHHHHHHHHHh
Confidence                  46667899999999999999999999999998865        34455666665 44333 2234789999999


Q ss_pred             HHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHH
Q 010063          355 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA  434 (519)
Q Consensus       355 al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  434 (519)
                      ++.+          .|....+-..+|.++...|.++.++.++++.+..+.        + ...+..||.++...+.+.+|
T Consensus       430 ~L~~----------~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~--------D-~~LH~~Lgd~~~A~Ne~Q~a  490 (564)
T KOG1174|consen  430 SLKI----------NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP--------D-VNLHNHLGDIMRAQNEPQKA  490 (564)
T ss_pred             hhcc----------CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc--------c-cHHHHHHHHHHHHhhhHHHH
Confidence            9886          233344557899999999999999999999998542        2 24677899999999999999


Q ss_pred             HHHHHHHHHH
Q 010063          435 ERLLRICLDI  444 (519)
Q Consensus       435 ~~~~~~al~~  444 (519)
                      .++|..|+.+
T Consensus       491 m~~y~~ALr~  500 (564)
T KOG1174|consen  491 MEYYYKALRQ  500 (564)
T ss_pred             HHHHHHHHhc
Confidence            9999999984

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.64  E-value=1e-12  Score=112.55  Aligned_cols=283  Identities=16%  Similarity=0.077  Sum_probs=219.2

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhc
Q 010063          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (519)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (519)
                      .....++.++..|+..|+-..|+.-+.+++++          .|+-..+....|.+++.+|++++|+.-|..++......
T Consensus        70 ~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel----------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~  139 (504)
T KOG0624|consen   70 NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL----------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN  139 (504)
T ss_pred             hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc----------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc
Confidence            45566899999999999999999999999998          88888899999999999999999999999988754211


Q ss_pred             CCCch--------HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHH
Q 010063          196 KDDEP--------LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI  267 (519)
Q Consensus       196 ~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  267 (519)
                      +....        .-...+......+...|++..|+.+....+++        .|.-+..+...+.||...|++..|+.-
T Consensus       140 ~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--------~~Wda~l~~~Rakc~i~~~e~k~AI~D  211 (504)
T KOG0624|consen  140 GLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--------QPWDASLRQARAKCYIAEGEPKKAIHD  211 (504)
T ss_pred             chhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--------CcchhHHHHHHHHHHHhcCcHHHHHHH
Confidence            11100        01122344455667789999999999988876        355677788889999999999999999


Q ss_pred             HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH---------HHH
Q 010063          268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL---------AHA  338 (519)
Q Consensus       268 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l---------a~~  338 (519)
                      ++.+-++        ..+....++.++.+++..|+.+.++...++++++     .++|......|-.+         +.-
T Consensus       212 lk~askL--------s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl-----dpdHK~Cf~~YKklkKv~K~les~e~  278 (504)
T KOG0624|consen  212 LKQASKL--------SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL-----DPDHKLCFPFYKKLKKVVKSLESAEQ  278 (504)
T ss_pred             HHHHHhc--------cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-----CcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            9988776        3445678899999999999999999999999986     33333322222222         233


Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHhhccCCCC-chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 010063          339 KCANGNAEEAVELYKKALRVIKDSNYMSLD-DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH  417 (519)
Q Consensus       339 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  417 (519)
                      ....++|.++++..++.++.       .|. .+........+..|+...|++.+|+....++++        ..|+.+.+
T Consensus       279 ~ie~~~~t~cle~ge~vlk~-------ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--------~d~~dv~~  343 (504)
T KOG0624|consen  279 AIEEKHWTECLEAGEKVLKN-------EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--------IDPDDVQV  343 (504)
T ss_pred             HHhhhhHHHHHHHHHHHHhc-------CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--------cCchHHHH
Confidence            44567777777777776654       222 334444556678899999999999999999887        46777889


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063          418 LLNLAASYSRSKNFVEAERLLRICLDI  444 (519)
Q Consensus       418 ~~~la~~~~~~g~~~~A~~~~~~al~~  444 (519)
                      +...|..|.....|+.|+.-|++|.+.
T Consensus       344 l~dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  344 LCDRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999884

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.63  E-value=2.3e-12  Score=121.98  Aligned_cols=310  Identities=16%  Similarity=0.105  Sum_probs=224.1

Q ss_pred             HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhc----CC-------hHHHHHHHHHHHhhhhh
Q 010063          126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI----GD-------LKFVQSLLDMMSGIVDS  194 (519)
Q Consensus       126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~-------~~~A~~~~~~~~~~~~~  194 (519)
                      .+.-..|.+++++++.++++.......     ..-.+..+..+|.+|..+    ..       ..++++.++++.+.   
T Consensus       402 lc~e~l~~~eegldYA~kai~~~~~~~-----~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~---  473 (799)
T KOG4162|consen  402 LCIERLKLVEEGLDYAQKAISLLGGQR-----SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF---  473 (799)
T ss_pred             HHHhchhhhhhHHHHHHHHHHHhhhhh-----hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc---
Confidence            455678899999999999999654332     445566777788777442    22       23455555555544   


Q ss_pred             cCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010063          195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (519)
Q Consensus       195 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (519)
                       ++.+|   .+.+.++.-|..+++.+.|..+.++++++..       ...+.++..++.++...+++.+|+.+...+++-
T Consensus       474 -d~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l~~-------~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E  542 (799)
T KOG4162|consen  474 -DPTDP---LVIFYLALQYAEQRQLTSALDYAREALALNR-------GDSAKAWHLLALVLSAQKRLKEALDVVDAALEE  542 (799)
T ss_pred             -CCCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence             34445   4588999999999999999999999998732       223677889999999999999999999999887


Q ss_pred             HHHhcCCCChhhHHHHHHHHHHHHhCCC-------------------------------------------HHHHHHHHH
Q 010063          275 LELNRGTESADLVLPLFSLGSLFIKEGK-------------------------------------------AVDAESVFS  311 (519)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------------------------------~~~A~~~~~  311 (519)
                      .....+        ....-..+-...++                                           ..+|.+...
T Consensus       543 ~~~N~~--------l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr  614 (799)
T KOG4162|consen  543 FGDNHV--------LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSR  614 (799)
T ss_pred             hhhhhh--------hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhH
Confidence            544211        01111111112233                                           334444444


Q ss_pred             HHHHHHHHh----------------cCCCChh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHH
Q 010063          312 RILKIYTKV----------------YGENDGR--VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME  373 (519)
Q Consensus       312 ~al~~~~~~----------------~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  373 (519)
                      ++.......                .+++++.  ....|...+..+...++.++|..++.++-.+.          +...
T Consensus       615 ~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~----------~l~~  684 (799)
T KOG4162|consen  615 YLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID----------PLSA  684 (799)
T ss_pred             HHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc----------hhhH
Confidence            444333211                0111111  22345567888889999999999999988773          4456


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHH--HHHHHHHHHHHhcCC
Q 010063          374 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER--LLRICLDIMTKTVGP  451 (519)
Q Consensus       374 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~~~~~~~  451 (519)
                      ..++..|.++..+|++.+|.+.|..++.+        +|+...+...+|.++.+.|+..-|..  ++..++++       
T Consensus       685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~-------  749 (799)
T KOG4162|consen  685 SVYYLRGLLLEVKGQLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL-------  749 (799)
T ss_pred             HHHHHhhHHHHHHHhhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-------
Confidence            77889999999999999999999999885        34445677889999999998887877  89999884       


Q ss_pred             CCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010063          452 DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  488 (519)
Q Consensus       452 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  488 (519)
                       +|....+|+.+|.++.++|+.++|.++|..++++-+
T Consensus       750 -dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~  785 (799)
T KOG4162|consen  750 -DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE  785 (799)
T ss_pred             -CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence             466778899999999999999999999999999764

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.63  E-value=5.4e-12  Score=119.55  Aligned_cols=336  Identities=19%  Similarity=0.167  Sum_probs=241.2

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHH
Q 010063          125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA  204 (519)
Q Consensus       125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  204 (519)
                      ...+...|++..+.+.|++++..          .....+.|+.++.+|...|.-..|+.+++......+.    .++...
T Consensus       330 t~al~~~g~f~~lae~fE~~~~~----------~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~----ps~~s~  395 (799)
T KOG4162|consen  330 TFALSRCGQFEVLAEQFEQALPF----------SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ----PSDISV  395 (799)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHh----------hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC----CCcchH
Confidence            34567789999999999998776          4556678999999999999999999999887765532    222223


Q ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc----CC-------HHHHHHHHHHHHH
Q 010063          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI----GR-------AKKAVEIYHRVIT  273 (519)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~-------~~~A~~~~~~al~  273 (519)
                      .+..-..++...+..++++.+..+++.....   ........++..+|.+|..+    ..       ..++++.++++++
T Consensus       396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~---~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~  472 (799)
T KOG4162|consen  396 LLMASKLCIERLKLVEEGLDYAQKAISLLGG---QRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ  472 (799)
T ss_pred             HHHHHHHHHhchhhhhhHHHHHHHHHHHhhh---hhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence            3344445666789999999999999997633   23334456677777777543    22       3455555666555


Q ss_pred             HHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 010063          274 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYK  353 (519)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  353 (519)
                      .        .+....+.+.++.-|..+++.+.|..+.++++++       +..+.+.+|..++.++...+++.+|+.+.+
T Consensus       473 ~--------d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l-------~~~~~~~~whLLALvlSa~kr~~~Al~vvd  537 (799)
T KOG4162|consen  473 F--------DPTDPLVIFYLALQYAEQRQLTSALDYAREALAL-------NRGDSAKAWHLLALVLSAQKRLKEALDVVD  537 (799)
T ss_pred             c--------CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHh-------cCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            4        3334478888999999999999999999999986       233455677888888888888888887777


Q ss_pred             HHHHHHHhhc----------------------------------------------------------------------
Q 010063          354 KALRVIKDSN----------------------------------------------------------------------  363 (519)
Q Consensus       354 ~al~~~~~~~----------------------------------------------------------------------  363 (519)
                      .+++-+..+.                                                                      
T Consensus       538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls  617 (799)
T KOG4162|consen  538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS  617 (799)
T ss_pred             HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence            6665443300                                                                      


Q ss_pred             ---------------------cCCCCch--HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHH
Q 010063          364 ---------------------YMSLDDS--IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN  420 (519)
Q Consensus       364 ---------------------~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  420 (519)
                                           ..++++.  .....+...+..+...++.++|..++.++-.+        .+.....++.
T Consensus       618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--------~~l~~~~~~~  689 (799)
T KOG4162|consen  618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--------DPLSASVYYL  689 (799)
T ss_pred             HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--------chhhHHHHHH
Confidence                                 0000000  01112234566666777777777777777654        4666788999


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHH--HHHHHHHHHHHhcCCCCCcc
Q 010063          421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK--LVLEALYIREIAFGKDSLPV  498 (519)
Q Consensus       421 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~a~~~~~~~~~~~~~~~  498 (519)
                      .|.++...|+..+|.+.|..++.+        +|+...+...+|.++...|+..-|..  .+..++++     ++.++  
T Consensus       690 ~G~~~~~~~~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~-----dp~n~--  754 (799)
T KOG4162|consen  690 RGLLLEVKGQLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL-----DPLNH--  754 (799)
T ss_pred             hhHHHHHHHhhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-----CCCCH--
Confidence            999999999999999999999984        34445666889999999999888888  89998875     35555  


Q ss_pred             hhhHHHHHHHHHHHHhhhcc
Q 010063          499 GKLFCFVLFGLVWFCLLLYK  518 (519)
Q Consensus       499 ~~~~~~~~l~~~~~~lg~~k  518 (519)
                         .+|++||.++..+||.+
T Consensus       755 ---eaW~~LG~v~k~~Gd~~  771 (799)
T KOG4162|consen  755 ---EAWYYLGEVFKKLGDSK  771 (799)
T ss_pred             ---HHHHHHHHHHHHccchH
Confidence               44999999999999864

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.62  E-value=4.6e-12  Score=120.00  Aligned_cols=289  Identities=13%  Similarity=0.100  Sum_probs=195.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCC
Q 010063          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS  241 (519)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  241 (519)
                      +...+.-|......||+++|++...+.....     +.|..  .+...+......|+++.|..++.++.+..     ++.
T Consensus        84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~-----~~p~l--~~llaA~aA~~~g~~~~A~~~l~~A~~~~-----~~~  151 (398)
T PRK10747         84 ARKQTEQALLKLAEGDYQQVEKLMTRNADHA-----EQPVV--NYLLAAEAAQQRGDEARANQHLERAAELA-----DND  151 (398)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcc-----cchHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----Ccc
Confidence            3344566777778999999997777644321     22332  13444666689999999999999997642     221


Q ss_pred             HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (519)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (519)
                       . .......+.++...|++++|...+++..+.        .|....++..++.+|...|++++|...+.+..+..    
T Consensus       152 -~-~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~----  217 (398)
T PRK10747        152 -Q-LPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH----  217 (398)
T ss_pred             -h-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC----
Confidence             1 122223489999999999999999999876        56667888999999999999999999998887642    


Q ss_pred             CCCChhHHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHH
Q 010063          322 GENDGRVGM-----AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL  396 (519)
Q Consensus       322 ~~~~~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  396 (519)
                       ..++....     ++..+........+-+...++++..-+.       .+++   ..+...++..+...|+.++|...+
T Consensus       218 -~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-------~~~~---~~~~~~~A~~l~~~g~~~~A~~~L  286 (398)
T PRK10747        218 -VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-------TRHQ---VALQVAMAEHLIECDDHDTAQQII  286 (398)
T ss_pred             -CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-------HhCC---HHHHHHHHHHHHHCCCHHHHHHHH
Confidence             11222211     2222222222222223333333322111       1222   345577999999999999999999


Q ss_pred             HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHH
Q 010063          397 EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA  476 (519)
Q Consensus       397 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  476 (519)
                      +++++.      +.++.....   .+.  ...++.+++++..++.++        .+|+....+..+|.++...|++++|
T Consensus       287 ~~~l~~------~~~~~l~~l---~~~--l~~~~~~~al~~~e~~lk--------~~P~~~~l~l~lgrl~~~~~~~~~A  347 (398)
T PRK10747        287 LDGLKR------QYDERLVLL---IPR--LKTNNPEQLEKVLRQQIK--------QHGDTPLLWSTLGQLLMKHGEWQEA  347 (398)
T ss_pred             HHHHhc------CCCHHHHHH---Hhh--ccCCChHHHHHHHHHHHh--------hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            998862      233432222   222  345899999999988876        4677777889999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhc
Q 010063          477 EKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLY  517 (519)
Q Consensus       477 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~  517 (519)
                      .++|+++++..        |+.   ..+..++.++..+|+.
T Consensus       348 ~~~le~al~~~--------P~~---~~~~~La~~~~~~g~~  377 (398)
T PRK10747        348 SLAFRAALKQR--------PDA---YDYAWLADALDRLHKP  377 (398)
T ss_pred             HHHHHHHHhcC--------CCH---HHHHHHHHHHHHcCCH
Confidence            99999999853        332   2244788888888874

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=1e-13  Score=121.56  Aligned_cols=285  Identities=15%  Similarity=0.051  Sum_probs=221.2

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC
Q 010063          161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT  240 (519)
Q Consensus       161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  240 (519)
                      .+.-....|..++...+|.+|+..+..++...       |..+..|.+.+..+...|++++|.-..++.+++-       
T Consensus        48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-------  113 (486)
T KOG0550|consen   48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMC-------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-------  113 (486)
T ss_pred             HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhC-------ccchhhhchhHHHHHHHHhHhhcccchhhheecC-------
Confidence            34445566788889999999999999999886       4446678899999999999999999998887752       


Q ss_pred             CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH--------HHHHHhcCC--CChhhHHHHHHHHHHHHhCCCHHHHHHHH
Q 010063          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI--------TILELNRGT--ESADLVLPLFSLGSLFIKEGKAVDAESVF  310 (519)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~  310 (519)
                       +.....+...+.++...++..+|...++..-        ...+.....  ..|........-+.++...|++++|...-
T Consensus       114 -d~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea  192 (486)
T KOG0550|consen  114 -DGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA  192 (486)
T ss_pred             -CCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence             2223456667777777777777776665221        111111111  12444555566788999999999999877


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHH---------HHHHHHHHH
Q 010063          311 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM---------ENMRIDLAE  381 (519)
Q Consensus       311 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---------~~~~~~la~  381 (519)
                      -..+++        ++....++...|.++...++.+.|+..+++++.+       +|++...         ...+..-|+
T Consensus       193 ~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l-------dpdh~~sk~~~~~~k~le~~k~~gN  257 (486)
T KOG0550|consen  193 IDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRL-------DPDHQKSKSASMMPKKLEVKKERGN  257 (486)
T ss_pred             HHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhcc-------ChhhhhHHhHhhhHHHHHHHHhhhh
Confidence            776664        4566778888899999999999999999999987       4444333         333455677


Q ss_pred             HHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHH
Q 010063          382 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML  461 (519)
Q Consensus       382 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  461 (519)
                      -..+.|++.+|.+.|.+++.+...    +....+..|.+.|.+...+|+..+|+.-.+.++.+        ++..+.++.
T Consensus       258 ~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D~syikall  325 (486)
T KOG0550|consen  258 DAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------DSSYIKALL  325 (486)
T ss_pred             hHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------CHHHHHHHH
Confidence            788999999999999999987533    34456778999999999999999999999999985        577889999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          462 HLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       462 ~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                      .-|.++...+++++|.+.|+++++..
T Consensus       326 ~ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  326 RRANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999865

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.58  E-value=8.2e-13  Score=116.46  Aligned_cols=182  Identities=14%  Similarity=0.049  Sum_probs=147.8

Q ss_pred             CChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063          282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (519)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (519)
                      ..+.....+..+|..+...|++++|+..+++++...     ++++....++..+|.++...|++++|+..++++++.   
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~---   99 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL---   99 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---
Confidence            345667889999999999999999999999998853     344556678899999999999999999999999987   


Q ss_pred             hccCCCCchHHHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHHHHHhhCCCChhHHH--------------HHH
Q 010063          362 SNYMSLDDSIMENMRIDLAELLHIV--------GRGQEGRELLEECLLITEKYKGKEHPSFVT--------------HLL  419 (519)
Q Consensus       362 ~~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------~~~  419 (519)
                          .|+++....+++.+|.++...        |++++|++.+++++....     +++....              ...
T Consensus       100 ----~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~a~~~~~~~~~~~~~~~~  170 (235)
T TIGR03302       100 ----HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP-----NSEYAPDAKKRMDYLRNRLAGKEL  170 (235)
T ss_pred             ----CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC-----CChhHHHHHHHHHHHHHHHHHHHH
Confidence                344555455678889999876        789999999999887532     2222111              124


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010063          420 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  485 (519)
Q Consensus       420 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  485 (519)
                      .+|.+|...|++.+|+..+++++...     +++|....++..+|.++...|++++|..+++....
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            67899999999999999999999853     55677888999999999999999999998877654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.57  E-value=1.1e-12  Score=115.52  Aligned_cols=180  Identities=14%  Similarity=0.089  Sum_probs=147.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (519)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (519)
                      +.....++.+|..+...|++++|+..+++++..     .++++....++..+|.++...|++++|+..++++++..    
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~----  100 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR-----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH----  100 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC----
Confidence            445778899999999999999999999999876     23445556788999999999999999999999999863    


Q ss_pred             CCCChhHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHhhccCCCCchHHHHH--------------HHHH
Q 010063          322 GENDGRVGMAMCSLAHAKCAN--------GNAEEAVELYKKALRVIKDSNYMSLDDSIMENM--------------RIDL  379 (519)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~--------------~~~l  379 (519)
                       ++++....++..+|.++...        |++++|++.+++++...       |++.....+              ...+
T Consensus       101 -p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~a~~~~~~~~~~~~~~~~~~  172 (235)
T TIGR03302       101 -PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-------PNSEYAPDAKKRMDYLRNRLAGKELYV  172 (235)
T ss_pred             -cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-------CCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence             34556666788899999876        88999999999998773       333222111              2367


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063          380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (519)
Q Consensus       380 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (519)
                      |.++...|++.+|+..+++++...     ++.|....++..+|.++...|++++|..+++....
T Consensus       173 a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       173 ARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            889999999999999999998764     34577788999999999999999999998877654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.57  E-value=1.4e-11  Score=114.64  Aligned_cols=318  Identities=14%  Similarity=0.093  Sum_probs=221.4

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      ++..+...+..++|...+...++.+..          .|++++++...|..+..+|+-++|......++...       +
T Consensus        10 lF~~~lk~yE~kQYkkgLK~~~~iL~k----------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-------~   72 (700)
T KOG1156|consen   10 LFRRALKCYETKQYKKGLKLIKQILKK----------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-------L   72 (700)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHh----------CCccchhHHhccchhhcccchHHHHHHHHHHhccC-------c
Confidence            777888889999999999999998885          88889999999999999999999999888876532       3


Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (519)
                      ....+|..+|.++....+|++|+.+|+.|+.+        .++....+..++.....+++++-....-.+.++.      
T Consensus        73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql------  138 (700)
T KOG1156|consen   73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL------  138 (700)
T ss_pred             ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh------
Confidence            33457899999999999999999999999986        2344677888888888999998888877777775      


Q ss_pred             CCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCC-------------------------------CC---h
Q 010063          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE-------------------------------ND---G  326 (519)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~---~  326 (519)
                        .|.....|...+..+...|++..|....+............                               ..   .
T Consensus       139 --~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~  216 (700)
T KOG1156|consen  139 --RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIV  216 (700)
T ss_pred             --hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHH
Confidence              34555677788888888888888887776665543211000                               00   0


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHH-HHHHHHH----------HHHHHc-CC------
Q 010063          327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME-NMRIDLA----------ELLHIV-GR------  388 (519)
Q Consensus       327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~~~la----------~~~~~~-g~------  388 (519)
                      +........+.++.+.+++++|...|...+...       |+..... .....+|          .+|... .+      
T Consensus       217 Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-------Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~  289 (700)
T KOG1156|consen  217 DKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-------PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHEC  289 (700)
T ss_pred             HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-------chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccccc
Confidence            111123344667788888888888888777652       2221111 1111111          011100 00      


Q ss_pred             -------------hHHHH--------------------H---------HHHHHHHHHHHhhCC-------------CChh
Q 010063          389 -------------GQEGR--------------------E---------LLEECLLITEKYKGK-------------EHPS  413 (519)
Q Consensus       389 -------------~~~A~--------------------~---------~~~~al~~~~~~~~~-------------~~~~  413 (519)
                                   +.+..                    .         +.++.+..+....+.             ....
T Consensus       290 p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Ptt  369 (700)
T KOG1156|consen  290 PRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTT  369 (700)
T ss_pred             chhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchH
Confidence                         00000                    0         111111111111111             1223


Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063          414 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (519)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (519)
                      ..++++.++.-+-..|+++.|..+...|+.        ..|...+.+..-|.++...|+.++|..++.++.++
T Consensus       370 llWt~y~laqh~D~~g~~~~A~~yId~AId--------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el  434 (700)
T KOG1156|consen  370 LLWTLYFLAQHYDKLGDYEVALEYIDLAID--------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL  434 (700)
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHhc--------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence            456778889999999999999999999987        46888899999999999999999999999988764

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.53  E-value=6.9e-11  Score=110.03  Aligned_cols=309  Identities=13%  Similarity=0.030  Sum_probs=239.1

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC
Q 010063          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (519)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (519)
                      ..+++.+..+.+.+.++-|+..|..+++.          .|....++...+..-..-|..++-..+++++....      
T Consensus       517 ~tw~~da~~~~k~~~~~carAVya~alqv----------fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~------  580 (913)
T KOG0495|consen  517 STWLDDAQSCEKRPAIECARAVYAHALQV----------FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC------  580 (913)
T ss_pred             hHHhhhHHHHHhcchHHHHHHHHHHHHhh----------ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC------
Confidence            34667777888888888888888888887          56666677777777777888888888899888766      


Q ss_pred             chHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010063          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (519)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (519)
                       |.....|...+..++..|+...|...+.++++..        |.....+..--.+.....+++.|..++.++...    
T Consensus       581 -pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--------pnseeiwlaavKle~en~e~eraR~llakar~~----  647 (913)
T KOG0495|consen  581 -PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--------PNSEEIWLAAVKLEFENDELERARDLLAKARSI----  647 (913)
T ss_pred             -CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--------CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc----
Confidence             3333446777888888899999999999988752        223445555567778889999999999998763    


Q ss_pred             cCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                           ..+..+++.-+.+...+++.++|+.+++++++.        .|.....|..+|+++..+++.+.|.+.|...++.
T Consensus       648 -----sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~  714 (913)
T KOG0495|consen  648 -----SGTERVWMKSANLERYLDNVEEALRLLEEALKS--------FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK  714 (913)
T ss_pred             -----CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--------CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc
Confidence                 234567777888888999999999999999985        4677778999999999999999999999988776


Q ss_pred             HHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH
Q 010063          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  438 (519)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  438 (519)
                      +..       .   ...+..|+.+-...|+.-.|...++++.-        .+|.....|......-.+.|+.+.|..+.
T Consensus       715 cP~-------~---ipLWllLakleEk~~~~~rAR~ildrarl--------kNPk~~~lwle~Ir~ElR~gn~~~a~~lm  776 (913)
T KOG0495|consen  715 CPN-------S---IPLWLLLAKLEEKDGQLVRARSILDRARL--------KNPKNALLWLESIRMELRAGNKEQAELLM  776 (913)
T ss_pred             CCC-------C---chHHHHHHHHHHHhcchhhHHHHHHHHHh--------cCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence            422       1   23457789999999999999999998764        45666677777778888999999999999


Q ss_pred             HHHHHHHHHhc--------CCCC--------------cchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          439 RICLDIMTKTV--------GPDD--------------QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       439 ~~al~~~~~~~--------~~~~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                      .+|++-+....        -..+              .....++..+|..+....++++|.++|.+++.+.
T Consensus       777 akALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d  847 (913)
T KOG0495|consen  777 AKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD  847 (913)
T ss_pred             HHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            98887442110        0000              1122345778999999999999999999999854

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=3.1e-10  Score=104.65  Aligned_cols=329  Identities=13%  Similarity=0.110  Sum_probs=209.5

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC
Q 010063          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (519)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (519)
                      ..++.........|+|++|.....+.+..          .|+...++..--.+.++.++|++|+...+.-....      
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~----------~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~------   76 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSI----------VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL------   76 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhc----------CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh------
Confidence            34677777888999999999999988876          56777788888888999999999986655422111      


Q ss_pred             chHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH---
Q 010063          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL---  275 (519)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---  275 (519)
                        ......+.-+.|.++.+..++|+..++-+        .+.+   ..++...|.+++.+|+|++|.+.|+...+-.   
T Consensus        77 --~~~~~~fEKAYc~Yrlnk~Dealk~~~~~--------~~~~---~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd  143 (652)
T KOG2376|consen   77 --VINSFFFEKAYCEYRLNKLDEALKTLKGL--------DRLD---DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD  143 (652)
T ss_pred             --hcchhhHHHHHHHHHcccHHHHHHHHhcc--------cccc---hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence              11111267888999999999999988721        1122   3345567899999999999999998774311   


Q ss_pred             --------------------HHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCh-------hH
Q 010063          276 --------------------ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG-------RV  328 (519)
Q Consensus       276 --------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~  328 (519)
                                          .+............++|.+.++...|+|.+|++.+++++.++++.+..++.       +.
T Consensus       144 ~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el  223 (652)
T KOG2376|consen  144 QDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEEL  223 (652)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHH
Confidence                                011111223356778999999999999999999999999999877644332       24


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHH-HHHHH-----------
Q 010063          329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQE-GRELL-----------  396 (519)
Q Consensus       329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~-----------  396 (519)
                      ..+...++.++..+|+.++|...|...+...      ..|.+..+.+-+||..+-....=++. ++..+           
T Consensus       224 ~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~------~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~  297 (652)
T KOG2376|consen  224 NPIRVQLAYVLQLQGQTAEASSIYVDIIKRN------PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFL  297 (652)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHhc------CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHH
Confidence            5567788999999999999999999887752      34555555554555433222111110 00000           


Q ss_pred             --------------------------HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcC
Q 010063          397 --------------------------EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG  450 (519)
Q Consensus       397 --------------------------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  450 (519)
                                                .++.++... .....|..............+...+.+|.+++.+.-+       
T Consensus       298 l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~-lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~-------  369 (652)
T KOG2376|consen  298 LSKLSKKQKQAIYRNNALLALFTNKMDQVRELSAS-LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD-------  369 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh-CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc-------
Confidence                                      001111111 1112222221111122222222245555555544333       


Q ss_pred             CCCcch-hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc
Q 010063          451 PDDQSI-SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF  491 (519)
Q Consensus       451 ~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  491 (519)
                       .+|.. ..+...++.+...+|+++.|++.+...++.....+
T Consensus       370 -~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~  410 (652)
T KOG2376|consen  370 -GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSI  410 (652)
T ss_pred             -cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhh
Confidence             34443 55677889999999999999999996665444433

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.48  E-value=1.1e-11  Score=111.53  Aligned_cols=226  Identities=15%  Similarity=0.071  Sum_probs=162.5

Q ss_pred             HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC
Q 010063          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (519)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (519)
                      ..+..+...|..|...|++++|...|.++.++..+..  +....+..+...+.+|... ++++|+.+++++++++.... 
T Consensus        33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~--~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-  108 (282)
T PF14938_consen   33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG--DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-  108 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-
Confidence            4455666778889999999999999999999988743  3455677788888888766 99999999999999998762 


Q ss_pred             CCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010063          323 ENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  401 (519)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  401 (519)
                       .....+.++..+|.+|... |++++|+++|++|.+++...    ..+.....++..+|.++...|+|++|++.|++...
T Consensus       109 -~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e----~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~  183 (282)
T PF14938_consen  109 -RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE----GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK  183 (282)
T ss_dssp             --HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             -cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC----CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence             3345688899999999999 99999999999999999873    35566677889999999999999999999999876


Q ss_pred             HHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh--cCChHHHHHH
Q 010063          402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH--LNRDKEAEKL  479 (519)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~  479 (519)
                      ...... ......-..+...+.++...|++..|...+++......   +-.+..-......|-.++..  ...+++|+.-
T Consensus       184 ~~l~~~-l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~---~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~  259 (282)
T PF14938_consen  184 KCLENN-LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP---SFASSREYKFLEDLLEAYEEGDVEAFTEAVAE  259 (282)
T ss_dssp             TCCCHC-TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST---TSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred             Hhhccc-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            432210 01223445567788899999999999998888765321   11123334445555555543  2334444444


Q ss_pred             HH
Q 010063          480 VL  481 (519)
Q Consensus       480 ~~  481 (519)
                      |.
T Consensus       260 ~d  261 (282)
T PF14938_consen  260 YD  261 (282)
T ss_dssp             HT
T ss_pred             Hc
Confidence            43

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.48  E-value=1.1e-11  Score=111.58  Aligned_cols=213  Identities=15%  Similarity=0.053  Sum_probs=155.6

Q ss_pred             hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010063          285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  364 (519)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  364 (519)
                      ..+..+...|..|...|++++|...|.++.+...+.  .+....+..+...+.++... ++++|+.++++++.++.+   
T Consensus        33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~---  106 (282)
T PF14938_consen   33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYRE---  106 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHh---
Confidence            335566677888999999999999999999998874  23345667778878887666 999999999999999987   


Q ss_pred             CCCCchHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063          365 MSLDDSIMENMRIDLAELLHIV-GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (519)
Q Consensus       365 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (519)
                       ...+...+.++..+|.+|... |++++|+++|++|+++++...  .......++..+|.++...|+|++|++.|++...
T Consensus       107 -~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~  183 (282)
T PF14938_consen  107 -AGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK  183 (282)
T ss_dssp             -CT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             -cCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence             356677788999999999999 999999999999999998752  3344567888999999999999999999999876


Q ss_pred             HHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH
Q 010063          444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWF  512 (519)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  512 (519)
                      ...... ......-..+...+.++...|+...|...+++.....     +..........+..|-.++.
T Consensus       184 ~~l~~~-l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~-----~~F~~s~E~~~~~~l~~A~~  246 (282)
T PF14938_consen  184 KCLENN-LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD-----PSFASSREYKFLEDLLEAYE  246 (282)
T ss_dssp             TCCCHC-TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS-----TTSTTSHHHHHHHHHHHHHH
T ss_pred             Hhhccc-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCCCcHHHHHHHHHHHHHH
Confidence            432110 0112233455677889999999999988888876543     22233333445555555543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=1.3e-09  Score=100.57  Aligned_cols=335  Identities=13%  Similarity=0.089  Sum_probs=210.9

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhh---------
Q 010063          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV---------  192 (519)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------  192 (519)
                      ++.+.+.++.+..++|+..++- +            ++....++...|.+++++|+|++|..+|+...+..         
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~~-~------------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r  149 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLKG-L------------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERR  149 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHhc-c------------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence            6888999999999999998872 1            23334567778899999999999999998764311         


Q ss_pred             ---------------hhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHH
Q 010063          193 ---------------DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------LLVTSLLG  250 (519)
Q Consensus       193 ---------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~  250 (519)
                                     +..+.........+++.+.++...|+|.+|++.+++++.++++.+..++.       .+..+...
T Consensus       150 ~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQ  229 (652)
T KOG2376|consen  150 ANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQ  229 (652)
T ss_pred             HHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Confidence                           11111222244568999999999999999999999999988776543322       45567778


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHH-HHHHH--------HHHHH------
Q 010063          251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD-AESVF--------SRILK------  315 (519)
Q Consensus       251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~--------~~al~------  315 (519)
                      ++.++..+|+.++|...|...+..-    ..|.+..+.+-+||-.+-....-++. ++..+        +..+.      
T Consensus       230 layVlQ~~Gqt~ea~~iy~~~i~~~----~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q  305 (652)
T KOG2376|consen  230 LAYVLQLQGQTAEASSIYVDIIKRN----PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ  305 (652)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHhc----CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            9999999999999999999887752    23455556666665443322222220 00000        00000      


Q ss_pred             -----------------------HHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHH
Q 010063          316 -----------------------IYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM  372 (519)
Q Consensus       316 -----------------------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  372 (519)
                                             +..+ .....|..................+.+|.+++...-+.       .+..  .
T Consensus       306 k~~i~~N~~lL~l~tnk~~q~r~~~a~-lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~-------~p~~--s  375 (652)
T KOG2376|consen  306 KQAIYRNNALLALFTNKMDQVRELSAS-LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG-------HPEK--S  375 (652)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHh-CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc-------CCch--h
Confidence                                   0000 11112221111111111122222344444444443222       2222  2


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC--CCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcC
Q 010063          373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG--KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG  450 (519)
Q Consensus       373 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  450 (519)
                      ..+...++.+...+|+++.|++.+...+........  ...|.+.   ..+-..+...++.+-|...+.+|+..+.....
T Consensus       376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V---~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t  452 (652)
T KOG2376|consen  376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV---GAIVALYYKIKDNDSASAVLDSAIKWWRKQQT  452 (652)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH---HHHHHHHHhccCCccHHHHHHHHHHHHHHhcc
Confidence            335567889999999999999999855533322221  1233332   23445677778888899999999998876543


Q ss_pred             CCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          451 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       451 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                      . .+.....+..++.+-.+.|+-++|...+++.++..
T Consensus       453 ~-s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n  488 (652)
T KOG2376|consen  453 G-SIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN  488 (652)
T ss_pred             c-chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence            3 35555667778888888999999999999988743

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.46  E-value=6e-10  Score=103.95  Aligned_cols=275  Identities=14%  Similarity=0.062  Sum_probs=221.5

Q ss_pred             CCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Q 010063          155 GNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE  234 (519)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  234 (519)
                      +....+.-.++..-+..+...+.++-|...|..+++.+       |..-.+|...+..-...|..++-..++++++....
T Consensus       509 gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-------p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p  581 (913)
T KOG0495|consen  509 GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-------PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP  581 (913)
T ss_pred             ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence            44566667778888888888999999999998888876       44444577777777778888888999999987643


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010063          235 SRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL  314 (519)
Q Consensus       235 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  314 (519)
                              ..-..+...+.-+...|+...|..++.++.+.        +|..-.++..-..+.....+++.|..+|.++.
T Consensus       582 --------kae~lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~eraR~llakar  645 (913)
T KOG0495|consen  582 --------KAEILWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERARDLLAKAR  645 (913)
T ss_pred             --------cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence                    22344556678888889999999999999886        45556677777778888999999999999987


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHH
Q 010063          315 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE  394 (519)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  394 (519)
                      ..         ..+..++..-+.+...+++.++|+.+++++++.+          +.....+..+|.++.++++.+.|.+
T Consensus       646 ~~---------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f----------p~f~Kl~lmlGQi~e~~~~ie~aR~  706 (913)
T KOG0495|consen  646 SI---------SGTERVWMKSANLERYLDNVEEALRLLEEALKSF----------PDFHKLWLMLGQIEEQMENIEMARE  706 (913)
T ss_pred             cc---------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC----------CchHHHHHHHhHHHHHHHHHHHHHH
Confidence            63         2344567777888889999999999999999984          2335567889999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChH
Q 010063          395 LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDK  474 (519)
Q Consensus       395 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  474 (519)
                      .|...+..        -|...-.+..|+.+-...|+.-.|...++++.-        .+|.....+.....+-.+.|+.+
T Consensus       707 aY~~G~k~--------cP~~ipLWllLakleEk~~~~~rAR~ildrarl--------kNPk~~~lwle~Ir~ElR~gn~~  770 (913)
T KOG0495|consen  707 AYLQGTKK--------CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL--------KNPKNALLWLESIRMELRAGNKE  770 (913)
T ss_pred             HHHhcccc--------CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh--------cCCCcchhHHHHHHHHHHcCCHH
Confidence            99887764        355566788899999999999999999998875        45777777777888888999999


Q ss_pred             HHHHHHHHHHHHH
Q 010063          475 EAEKLVLEALYIR  487 (519)
Q Consensus       475 ~A~~~~~~a~~~~  487 (519)
                      .|...+.+|++-+
T Consensus       771 ~a~~lmakALQec  783 (913)
T KOG0495|consen  771 QAELLMAKALQEC  783 (913)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999998754

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.45  E-value=4.7e-11  Score=116.17  Aligned_cols=363  Identities=15%  Similarity=0.101  Sum_probs=233.8

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      ...++-.+...++...|+..++.++..          +|....++..+|.+|...|.+..|++.|.++..+.       |
T Consensus       565 W~~rG~yyLea~n~h~aV~~fQsALR~----------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-------P  627 (1238)
T KOG1127|consen  565 WVQRGPYYLEAHNLHGAVCEFQSALRT----------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-------P  627 (1238)
T ss_pred             hhhccccccCccchhhHHHHHHHHhcC----------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-------c
Confidence            334677788899999999999999988          89999999999999999999999999999987765       5


Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (519)
                      ....+.+..+......|+|.+|+..+...+...... .+.....+.++..++..+...|=+.+|.++++++++.+.-...
T Consensus       628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e-~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~  706 (1238)
T KOG1127|consen  628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLE-RTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI  706 (1238)
T ss_pred             HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            555557788889999999999999999887765432 1122356777888888888888888888888887765431110


Q ss_pred             ----------------------------------------------CCC----------------hhhHHHHHHHHHHHH
Q 010063          281 ----------------------------------------------TES----------------ADLVLPLFSLGSLFI  298 (519)
Q Consensus       281 ----------------------------------------------~~~----------------~~~~~~~~~la~~~~  298 (519)
                                                                    ++.                ...+..++++|..|.
T Consensus       707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl  786 (1238)
T KOG1127|consen  707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL  786 (1238)
T ss_pred             HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence                                                          000                011234667776665


Q ss_pred             h--------CCCHHHHHHHHHHHHHHHHHhc----------CC---------------CChhHHHHHHHHHHHHHHCCCH
Q 010063          299 K--------EGKAVDAESVFSRILKIYTKVY----------GE---------------NDGRVGMAMCSLAHAKCANGNA  345 (519)
Q Consensus       299 ~--------~g~~~~A~~~~~~al~~~~~~~----------~~---------------~~~~~~~~~~~la~~~~~~g~~  345 (519)
                      .        +.+...|+..+.+++.+.....          |.               ..|.....|.|+|.++....++
T Consensus       787 r~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~  866 (1238)
T KOG1127|consen  787 RYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDF  866 (1238)
T ss_pred             HHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccH
Confidence            5        2233467888888877643210          00               0112222344444455555555


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH
Q 010063          346 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY  425 (519)
Q Consensus       346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  425 (519)
                      +-|...+.++..+          .|.....+...+.+....|+.-++...+...-+......  ..+. ...+..--...
T Consensus       867 E~A~~af~~~qSL----------dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~g--ka~~-f~Yw~c~te~h  933 (1238)
T KOG1127|consen  867 EHAEPAFSSVQSL----------DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEG--KAKK-FQYWLCATEIH  933 (1238)
T ss_pred             HHhhHHHHhhhhc----------CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcccc--ccch-hhHHHHHHHHH
Confidence            5555555444433          111123344455555555655555555554333321110  1111 12233334445


Q ss_pred             HhccCHHHHHHHHHHHHH--HHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHH
Q 010063          426 SRSKNFVEAERLLRICLD--IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFC  503 (519)
Q Consensus       426 ~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  503 (519)
                      ...|++++-+...+++-.  +.-+.+-..+|+...++...|.....++.+++|.+.+.+.+.+.+..+..+...+.    
T Consensus       934 ~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynva---- 1009 (1238)
T KOG1127|consen  934 LQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVA---- 1009 (1238)
T ss_pred             HhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh----
Confidence            566666666555544322  11112224578888999999999999999999999999999999988876665552    


Q ss_pred             HHHHHHHHHHhhhcc
Q 010063          504 FVLFGLVWFCLLLYK  518 (519)
Q Consensus       504 ~~~l~~~~~~lg~~k  518 (519)
                      --+.|.++..+|+|.
T Consensus      1010 k~~~gRL~lslgefe 1024 (1238)
T KOG1127|consen 1010 KPDAGRLELSLGEFE 1024 (1238)
T ss_pred             hhhhhhhhhhhcchh
Confidence            336788888888763

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.43  E-value=1.3e-09  Score=104.38  Aligned_cols=314  Identities=14%  Similarity=0.077  Sum_probs=198.0

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      ++=.+..+...|++++|++.++.....          ..+....+-..|.++..+|++++|...+...+...       |
T Consensus         7 lLY~~~il~e~g~~~~AL~~L~~~~~~----------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-------P   69 (517)
T PF12569_consen    7 LLYKNSILEEAGDYEEALEHLEKNEKQ----------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-------P   69 (517)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhhhhh----------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------C
Confidence            445667778999999999999876544          56677788899999999999999999999988764       3


Q ss_pred             HHHHHHHHHHHHHHccc-----cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHH-HHHHHHHHH
Q 010063          201 LLDAILLHMGSMYSTLE-----NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV-EIYHRVITI  274 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~  274 (519)
                      +....+..+..+.....     +.+.-..+|++....+.+         ..+-..+...+..-.++.... .++...+. 
T Consensus        70 dn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~---------s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~-  139 (517)
T PF12569_consen   70 DNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPR---------SDAPRRLPLDFLEGDEFKERLDEYLRPQLR-  139 (517)
T ss_pred             CcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcc---------ccchhHhhcccCCHHHHHHHHHHHHHHHHh-
Confidence            33333555555542222     344445555544332211         111111121222212232222 22222221 


Q ss_pred             HHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh--cC------CCChh-HHHHHHHHHHHHHHCCCH
Q 010063          275 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV--YG------ENDGR-VGMAMCSLAHAKCANGNA  345 (519)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~------~~~~~-~~~~~~~la~~~~~~g~~  345 (519)
                               ..++....++-.+|....+..-...++.......+..  +.      ...|. ..++++.+|..|...|++
T Consensus       140 ---------KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~  210 (517)
T PF12569_consen  140 ---------KGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDY  210 (517)
T ss_pred             ---------cCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCH
Confidence                     1233455556666664433333333333333222111  00      12233 467889999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH
Q 010063          346 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY  425 (519)
Q Consensus       346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  425 (519)
                      ++|+++++++++.          .|.....+...|.++...|++.+|.+.++.|..+-        ...-.+-...+..+
T Consensus       211 ~~Al~~Id~aI~h----------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD--------~~DRyiNsK~aKy~  272 (517)
T PF12569_consen  211 EKALEYIDKAIEH----------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD--------LADRYINSKCAKYL  272 (517)
T ss_pred             HHHHHHHHHHHhc----------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC--------hhhHHHHHHHHHHH
Confidence            9999999999986          34446778999999999999999999999987642        22223444567788


Q ss_pred             HhccCHHHHHHHHHHHHHHHHHhcC-C-CCc---chhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcC
Q 010063          426 SRSKNFVEAERLLRICLDIMTKTVG-P-DDQ---SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG  492 (519)
Q Consensus       426 ~~~g~~~~A~~~~~~al~~~~~~~~-~-~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  492 (519)
                      .+.|+.++|...+..-    .+... + .+.   ...+.....|.+|.+.|++..|++.|..+.+.+.....
T Consensus       273 LRa~~~e~A~~~~~~F----tr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~  340 (517)
T PF12569_consen  273 LRAGRIEEAEKTASLF----TREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE  340 (517)
T ss_pred             HHCCCHHHHHHHHHhh----cCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence            8999999998876543    22211 1 011   11233346799999999999999999999999987754

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.41  E-value=7.5e-09  Score=91.45  Aligned_cols=305  Identities=18%  Similarity=0.140  Sum_probs=203.5

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCc
Q 010063          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (519)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (519)
                      .-...|..-+..|+|.+|.....++-+.          .+.....+..-+.+--.+||++.+-.++.++.+..     .+
T Consensus        86 ~~~~egl~~l~eG~~~qAEkl~~rnae~----------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-----~~  150 (400)
T COG3071          86 KALNEGLLKLFEGDFQQAEKLLRRNAEH----------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-----GD  150 (400)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHhhhc----------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-----CC
Confidence            3455666667899999999998886554          44445556666778889999999999999987763     12


Q ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (519)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (519)
                      +... +....+.....+|+++.|..-..++++..     +.+   ..++.....+|...|++.+...+..+..+.-  ..
T Consensus       151 ~~l~-v~ltrarlll~~~d~~aA~~~v~~ll~~~-----pr~---~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~--~l  219 (400)
T COG3071         151 DTLA-VELTRARLLLNRRDYPAARENVDQLLEMT-----PRH---PEVLRLALRAYIRLGAWQALLAILPKLRKAG--LL  219 (400)
T ss_pred             chHH-HHHHHHHHHHhCCCchhHHHHHHHHHHhC-----cCC---hHHHHHHHHHHHHhccHHHHHHHHHHHHHcc--CC
Confidence            3333 37788999999999999999999888762     333   4556677899999999999988887664421  11


Q ss_pred             CCCChhhHHHHHHHHH--HHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010063          280 GTESADLVLPLFSLGS--LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  357 (519)
Q Consensus       280 ~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  357 (519)
                        ++++ ..-+-+.+.  ++...++-..+..+.+---+.-++.  ..+|..   ...++.-+...|+.++|.+..+++++
T Consensus       220 --~~~e-~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l--r~~p~l---~~~~a~~li~l~~~~~A~~~i~~~Lk  291 (400)
T COG3071         220 --SDEE-AARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL--RNDPEL---VVAYAERLIRLGDHDEAQEIIEDALK  291 (400)
T ss_pred             --ChHH-HHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHh--hcChhH---HHHHHHHHHHcCChHHHHHHHHHHHH
Confidence              1222 222222221  1222223222322111111111111  123443   34567788899999999999999988


Q ss_pred             HHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHH
Q 010063          358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL  437 (519)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  437 (519)
                      ..       .|+. .    ..+.. ...-++...=++..++.++        .+|+....+..||.++.+.+.|.+|..+
T Consensus       292 ~~-------~D~~-L----~~~~~-~l~~~d~~~l~k~~e~~l~--------~h~~~p~L~~tLG~L~~k~~~w~kA~~~  350 (400)
T COG3071         292 RQ-------WDPR-L----CRLIP-RLRPGDPEPLIKAAEKWLK--------QHPEDPLLLSTLGRLALKNKLWGKASEA  350 (400)
T ss_pred             hc-------cChh-H----HHHHh-hcCCCCchHHHHHHHHHHH--------hCCCChhHHHHHHHHHHHhhHHHHHHHH
Confidence            62       2222 1    11111 2245666666666666555        3455557888999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010063          438 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  488 (519)
Q Consensus       438 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  488 (519)
                      ++.+++..         .....+..+|.++.++|+.++|...+++++....
T Consensus       351 leaAl~~~---------~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~  392 (400)
T COG3071         351 LEAALKLR---------PSASDYAELADALDQLGEPEEAEQVRREALLLTR  392 (400)
T ss_pred             HHHHHhcC---------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence            99988732         2235678899999999999999999999996553

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.41  E-value=7.6e-09  Score=96.80  Aligned_cols=313  Identities=15%  Similarity=0.082  Sum_probs=205.2

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHH
Q 010063          123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL  202 (519)
Q Consensus       123 ~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  202 (519)
                      ..|..+....+|++|+.+|+.|+.+          .+++..++..++....++|+++.....-.+.++..       |..
T Consensus        80 v~gl~~R~dK~Y~eaiKcy~nAl~~----------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-------~~~  142 (700)
T KOG1156|consen   80 VLGLLQRSDKKYDEAIKCYRNALKI----------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-------PSQ  142 (700)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhc----------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-------hhh
Confidence            3455567778899999999999998          88888999999999999999998887777766554       555


Q ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (519)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (519)
                      ...|...+..+.-.|++..|....+...................+......+....|.+++|.+.+..--.-        
T Consensus       143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--------  214 (700)
T KOG1156|consen  143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--------  214 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--------
Confidence            556888999999999999999988877665542222222233444555566666777776666665443221        


Q ss_pred             ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH----------------------
Q 010063          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC----------------------  340 (519)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----------------------  340 (519)
                      ..+.....-..+.++...+++++|...+...+...        |+....+..+-.++.                      
T Consensus       215 i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--------Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r  286 (700)
T KOG1156|consen  215 IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--------PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR  286 (700)
T ss_pred             HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--------chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence            11223334455667777777777777776665531        111111111111100                      


Q ss_pred             -----------------------------HC-------------CCHHHHHHHHHHHHHHHHhhc----cCC-------C
Q 010063          341 -----------------------------AN-------------GNAEEAVELYKKALRVIKDSN----YMS-------L  367 (519)
Q Consensus       341 -----------------------------~~-------------g~~~~A~~~~~~al~~~~~~~----~~~-------~  367 (519)
                                                   ..             .+..+. .++++.+..+....    ...       .
T Consensus       287 ~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E  365 (700)
T KOG1156|consen  287 HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQE  365 (700)
T ss_pred             cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccC
Confidence                                         00             011111 12222222222110    000       1


Q ss_pred             CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010063          368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK  447 (519)
Q Consensus       368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  447 (519)
                      .+....+++..++.-+...|+++.|..+.+.|+.        ..|...+.+..-|.++...|+.++|...+.++.++   
T Consensus       366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el---  434 (700)
T KOG1156|consen  366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL---  434 (700)
T ss_pred             CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---
Confidence            3445567778899999999999999999999986        57888899999999999999999999999998874   


Q ss_pred             hcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010063          448 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  485 (519)
Q Consensus       448 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  485 (519)
                          +.++.. +-..-|....+.++.++|.+...+--.
T Consensus       435 ----D~aDR~-INsKcAKYmLrAn~i~eA~~~~skFTr  467 (700)
T KOG1156|consen  435 ----DTADRA-INSKCAKYMLRANEIEEAEEVLSKFTR  467 (700)
T ss_pred             ----cchhHH-HHHHHHHHHHHccccHHHHHHHHHhhh
Confidence                333332 122567777888999999887765543

>PLN02789 farnesyltranstransferase

Probab=99.41  E-value=4e-10  Score=101.81  Aligned_cols=219  Identities=13%  Similarity=0.032  Sum_probs=167.8

Q ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHhcC
Q 010063          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELNRG  280 (519)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~  280 (519)
                      ...++..+-.++...+++++|+..+.+++.+        +|....++...+.++...| ++++++..+.+++..      
T Consensus        36 ~~~a~~~~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~------  101 (320)
T PLN02789         36 FREAMDYFRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED------  101 (320)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH------
Confidence            3334444555566778999999999999986        3555778889999999998 689999999999986      


Q ss_pred             CCChhhHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          281 TESADLVLPLFSLGSLFIKEGKA--VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                        +|....+++..+.++...|+.  ++++.++++++++        +|....++...+.++...|++++|++++.++++.
T Consensus       102 --npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~  171 (320)
T PLN02789        102 --NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE  171 (320)
T ss_pred             --CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence              566677899999999888874  6788888888874        5777889999999999999999999999999987


Q ss_pred             HHhhccCCCCchHHHHHHHHHHHHHHHc---CCh----HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh----
Q 010063          359 IKDSNYMSLDDSIMENMRIDLAELLHIV---GRG----QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR----  427 (519)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----  427 (519)
                      .       +.+   ..+++..+.++...   |.+    ++++.+..+++.+        .|....++..++.++..    
T Consensus       172 d-------~~N---~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~  233 (320)
T PLN02789        172 D-------VRN---NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEA  233 (320)
T ss_pred             C-------CCc---hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcc
Confidence            2       222   44667777777665   333    4677777777764        45556788888888877    


Q ss_pred             ccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhc
Q 010063          428 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL  470 (519)
Q Consensus       428 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  470 (519)
                      .++..+|.+.+.+++.        ..+....++..|+.+|...
T Consensus       234 l~~~~~~~~~~~~~~~--------~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        234 LVSDPEVSSVCLEVLS--------KDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             cccchhHHHHHHHhhc--------ccCCcHHHHHHHHHHHHhh
Confidence            4556778887777655        2355566778889988763

>PLN02789 farnesyltranstransferase

Probab=99.40  E-value=3.9e-10  Score=101.89  Aligned_cols=208  Identities=13%  Similarity=0.037  Sum_probs=161.4

Q ss_pred             HHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010063          172 YVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLESRYGKTSILLVTSLLG  250 (519)
Q Consensus       172 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  250 (519)
                      +...+.+++|+..+.+++.+.       |....++...+.++...| ++++++..+.+++..        +|....++..
T Consensus        47 l~~~e~serAL~lt~~aI~ln-------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~~  111 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLN-------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWHH  111 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhHH
Confidence            445678899999999998775       666778999999999988 689999999999875        3444667888


Q ss_pred             HHHHHhhcCCH--HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 010063          251 MAKVLGSIGRA--KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV  328 (519)
Q Consensus       251 la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  328 (519)
                      .+.++...|+.  ++++.++.++++.        +|....++...+.++...|++++|+.++.++++.        ++..
T Consensus       112 R~~~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--------d~~N  175 (320)
T PLN02789        112 RRWLAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--------DVRN  175 (320)
T ss_pred             HHHHHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--------CCCc
Confidence            88888888874  6788899899876        6777899999999999999999999999999985        4666


Q ss_pred             HHHHHHHHHHHHHC---CCH----HHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH----cCChHHHHHHHH
Q 010063          329 GMAMCSLAHAKCAN---GNA----EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLE  397 (519)
Q Consensus       329 ~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~  397 (519)
                      ..+++..+.+....   |.+    ++++.+..+++..       .|++   ..+++.++.++..    .++..+|.+.+.
T Consensus       176 ~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-------~P~N---~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~  245 (320)
T PLN02789        176 NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-------NPRN---ESPWRYLRGLFKDDKEALVSDPEVSSVCL  245 (320)
T ss_pred             hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-------CCCC---cCHHHHHHHHHhcCCcccccchhHHHHHH
Confidence            67888898888765   333    4677888888876       2333   3455777888877    345667888777


Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHHHHHhc
Q 010063          398 ECLLITEKYKGKEHPSFVTHLLNLAASYSRS  428 (519)
Q Consensus       398 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  428 (519)
                      +++.        ..+....++..|+.+|...
T Consensus       246 ~~~~--------~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        246 EVLS--------KDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             Hhhc--------ccCCcHHHHHHHHHHHHhh
Confidence            7655        2345556778888888763

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.36  E-value=2.9e-09  Score=104.06  Aligned_cols=234  Identities=12%  Similarity=0.083  Sum_probs=184.9

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHH
Q 010063          131 MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMG  210 (519)
Q Consensus       131 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  210 (519)
                      +.+...|...+-+++.+          ++..+.++..+|.+|...-|...|...|.++.++.       +..+.+.-..+
T Consensus       471 rK~~~~al~ali~alrl----------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-------atdaeaaaa~a  533 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRL----------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-------ATDAEAAAASA  533 (1238)
T ss_pred             hhhHHHHHHHHHHHHhc----------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------chhhhhHHHHH
Confidence            44567777878777777          88889999999999999889999999999998775       44455567788


Q ss_pred             HHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 010063          211 SMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL  290 (519)
Q Consensus       211 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  290 (519)
                      ..|....+++.|......+-+....      ......+..+|..|...+++..|+..++.+++.        +|....++
T Consensus       534 dtyae~~~we~a~~I~l~~~qka~a------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W  599 (1238)
T KOG1127|consen  534 DTYAEESTWEEAFEICLRAAQKAPA------FACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLW  599 (1238)
T ss_pred             HHhhccccHHHHHHHHHHHhhhchH------HHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHH
Confidence            9999999999998874443332111      122234455899999999999999999999986        67778999


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCch
Q 010063          291 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS  370 (519)
Q Consensus       291 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  370 (519)
                      ..+|.+|...|++..|++.|.++..+        .|......+..+.+....|+|.+|+..+...+......   .+...
T Consensus       600 ~gLGeAY~~sGry~~AlKvF~kAs~L--------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e---~~~q~  668 (1238)
T KOG1127|consen  600 LGLGEAYPESGRYSHALKVFTKASLL--------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLE---RTGQN  668 (1238)
T ss_pred             HHHHHHHHhcCceehHHHhhhhhHhc--------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHhhh
Confidence            99999999999999999999999875        46666677888999999999999999999988776542   22233


Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 010063          371 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  406 (519)
Q Consensus       371 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  406 (519)
                      ..+.++..++..+...|=..+|..+++++++.+.-.
T Consensus       669 gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~  704 (1238)
T KOG1127|consen  669 GLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS  704 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            445666777777777888889999999888876443

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=99.36  E-value=5.6e-09  Score=101.56  Aligned_cols=413  Identities=12%  Similarity=0.029  Sum_probs=255.3

Q ss_pred             hcccccccccccccccchhhHHHHhhhcccccCCCCCcchhhhhhhccC----CCCchhhhhhhhhhhhhhccccCcchH
Q 010063           39 ICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSG----FSAPNDFARSKTLHDHSSNLWDGMNDF  114 (519)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~  114 (519)
                      ..+.+.+...+.|+..|+++.+|+.+.|.+.++..+...+......-.-    ...-+.|-|++.+|.......-.. ..
T Consensus       264 eVld~Lp~~l~~FLl~~svl~~f~~eL~~~Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~-~~  342 (894)
T COG2909         264 EVLDRLPPELRDFLLQTSVLSRFNDELCNALTGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR-EL  342 (894)
T ss_pred             HHHhcCCHHHHHHHHHHHhHHHhhHHHHHHHhcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc-cc
Confidence            4577889999999999999999999999999999998877777765332    334456778888776554211111 11


Q ss_pred             HHHHHH-HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhh
Q 010063          115 ERQLLE-LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD  193 (519)
Q Consensus       115 ~~~~~~-l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  193 (519)
                      ...... ....+..+...|..++|++..-.|-+           ....+..+...+.-....++..--....+..   -.
T Consensus       343 ~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d-----------~~~aa~lle~~~~~L~~~~~lsll~~~~~~l---P~  408 (894)
T COG2909         343 AARLKELHRAAAEWFAEHGLPSEAIDHALAAGD-----------PEMAADLLEQLEWQLFNGSELSLLLAWLKAL---PA  408 (894)
T ss_pred             CCchhHHHHHHHHHHHhCCChHHHHHHHHhCCC-----------HHHHHHHHHhhhhhhhcccchHHHHHHHHhC---CH
Confidence            122333 44455778899999999986554321           2223334444555555555554333332221   00


Q ss_pred             hcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010063          194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY-GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI  272 (519)
Q Consensus       194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  272 (519)
                      .+-..+|..   ....++......++.+|.....++........ .......+......|.+....|++++|+++.+.++
T Consensus       409 ~~l~~~P~L---vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al  485 (894)
T COG2909         409 ELLASTPRL---VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLAL  485 (894)
T ss_pred             HHHhhCchH---HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            000112322   34456677788999999999988876554310 01112334445556788889999999999999998


Q ss_pred             HHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHH--HH
Q 010063          273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA--VE  350 (519)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A--~~  350 (519)
                      ......   .......++..+|.+..-.|++++|..+..++.++.++..  ...-...+....+.++..+|+...|  +.
T Consensus       486 ~~L~~~---~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~~~l~~~~~~~~s~il~~qGq~~~a~~~~  560 (894)
T COG2909         486 VQLPEA---AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--VYHLALWSLLQQSEILEAQGQVARAEQEK  560 (894)
T ss_pred             Hhcccc---cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            875332   2344567888999999999999999999999999987762  2233445666778899999943333  22


Q ss_pred             HHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccC
Q 010063          351 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN  430 (519)
Q Consensus       351 ~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  430 (519)
                      .+...-.....   ..+.+.....++..+..++.+   ++.+..-....+++..... +........+..|+.++...|+
T Consensus       561 ~~~~~~~q~l~---q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~-~~~~~~~~~~~~LA~l~~~~Gd  633 (894)
T COG2909         561 AFNLIREQHLE---QKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYT-PQPLLSRLALSMLAELEFLRGD  633 (894)
T ss_pred             HHHHHHHHHhh---hcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcc-cchhHHHHHHHHHHHHHHhcCC
Confidence            22222222111   122233333344444444443   6666666666665543321 1111222333589999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcchh-HHHHHHHHHHHhcCChHHHHHHHHHH
Q 010063          431 FVEAERLLRICLDIMTKTVGPDDQSIS-FPMLHLGITLYHLNRDKEAEKLVLEA  483 (519)
Q Consensus       431 ~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a  483 (519)
                      +++|...+.+.........  .+++.. .+..........+|+.++|.....+.
T Consensus       634 l~~A~~~l~~~~~l~~~~~--~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s  685 (894)
T COG2909         634 LDKALAQLDELERLLLNGQ--YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS  685 (894)
T ss_pred             HHHHHHHHHHHHHHhcCCC--CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence            9999999999888765421  233332 22223334445689999998888774

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.36  E-value=1.2e-09  Score=104.64  Aligned_cols=303  Identities=13%  Similarity=0.047  Sum_probs=186.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCC
Q 010063          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS  241 (519)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  241 (519)
                      .+++.....++...|++++|+.+++......       .+...++...|.++...|++++|...|...++..        
T Consensus         4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I-------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--------   68 (517)
T PF12569_consen    4 SELLLYKNSILEEAGDYEEALEHLEKNEKQI-------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--------   68 (517)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhC-------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------
Confidence            4566677888899999999999998754433       4445567889999999999999999999988762        


Q ss_pred             HHHHHHHHHHHHHHhhcC-----CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHH-HHHHHHHHHH
Q 010063          242 ILLVTSLLGMAKVLGSIG-----RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD-AESVFSRILK  315 (519)
Q Consensus       242 ~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~  315 (519)
                      |+....+..+..+.....     +.+.-..+|++....+.+.         .+...+...+..-..|.. +..++...+.
T Consensus        69 Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s---------~~~~rl~L~~~~g~~F~~~~~~yl~~~l~  139 (517)
T PF12569_consen   69 PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRS---------DAPRRLPLDFLEGDEFKERLDEYLRPQLR  139 (517)
T ss_pred             CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccc---------cchhHhhcccCCHHHHHHHHHHHHHHHHh
Confidence            333555555555553222     3455555565544332111         111111111111112222 2233333322


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC-------CCCchHHHHHHHHHHHHHHHcCC
Q 010063          316 IYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM-------SLDDSIMENMRIDLAELLHIVGR  388 (519)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~~~~~~~la~~~~~~g~  388 (519)
                             ...|.   ...++-.+|....+.+-...++.............       ...+....++++.+|..|...|+
T Consensus       140 -------KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~  209 (517)
T PF12569_consen  140 -------KGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGD  209 (517)
T ss_pred             -------cCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCC
Confidence                   12333   44555555654433333333333333322221111       12234456788999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH
Q 010063          389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY  468 (519)
Q Consensus       389 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  468 (519)
                      +++|+++.+++++        ..|...+.+...|.++...|++.+|.+.++.|..+-        .....+-...+..+.
T Consensus       210 ~~~Al~~Id~aI~--------htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD--------~~DRyiNsK~aKy~L  273 (517)
T PF12569_consen  210 YEKALEYIDKAIE--------HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD--------LADRYINSKCAKYLL  273 (517)
T ss_pred             HHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC--------hhhHHHHHHHHHHHH
Confidence            9999999999998        467788999999999999999999999999987741        222233456678888


Q ss_pred             hcCChHHHHHHHHHHHHHHHHhcCCCCCcch---hhHHHHHHHHHHHHhhhcc
Q 010063          469 HLNRDKEAEKLVLEALYIREIAFGKDSLPVG---KLFCFVLFGLVWFCLLLYK  518 (519)
Q Consensus       469 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~lg~~k  518 (519)
                      +.|+.++|.+.+..-..--.   + ...+..   ..+.....|.+|...|+|.
T Consensus       274 Ra~~~e~A~~~~~~Ftr~~~---~-~~~~L~~mQc~Wf~~e~a~a~~r~~~~~  322 (517)
T PF12569_consen  274 RAGRIEEAEKTASLFTREDV---D-PLSNLNDMQCMWFETECAEAYLRQGDYG  322 (517)
T ss_pred             HCCCHHHHHHHHHhhcCCCC---C-cccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            99999999988765532110   0 011111   1233456699999998873

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.35  E-value=2.3e-09  Score=92.84  Aligned_cols=234  Identities=14%  Similarity=0.072  Sum_probs=134.3

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063          248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  327 (519)
Q Consensus       248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  327 (519)
                      ...+|.+++..-.|.+|++.|.+++.        ++|.....-..++.+|+++.-++-+.+.+.--+.        ..|+
T Consensus       154 qLSLAsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~--------q~pd  217 (557)
T KOG3785|consen  154 QLSLASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR--------QFPD  217 (557)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH--------hCCC
Confidence            44667777778888888888888876        4666677777889999999988888776655544        2444


Q ss_pred             HHHHHHHHHHHHHH--CCCHHHHHH--H-------HHHHHHHHHhhc-----------cCCCCchHHHHHHHHHHHHHHH
Q 010063          328 VGMAMCSLAHAKCA--NGNAEEAVE--L-------YKKALRVIKDSN-----------YMSLDDSIMENMRIDLAELLHI  385 (519)
Q Consensus       328 ~~~~~~~la~~~~~--~g~~~~A~~--~-------~~~al~~~~~~~-----------~~~~~~~~~~~~~~~la~~~~~  385 (519)
                      ...+.+..+...++  .|+..+++.  +       |..+-.+.+...           .+++--..+..+..+|+..|.+
T Consensus       218 StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~  297 (557)
T KOG3785|consen  218 STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLN  297 (557)
T ss_pred             cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecc
Confidence            44455555544443  233322211  0       001111111000           0111112234566889999999


Q ss_pred             cCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCC-----c------
Q 010063          386 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD-----Q------  454 (519)
Q Consensus       386 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~------  454 (519)
                      +|+..+|..+.+.           -.|....-+...|.+....|+--...+.++-|-..++-+.+...     |      
T Consensus       298 q~dVqeA~~L~Kd-----------l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA  366 (557)
T KOG3785|consen  298 QNDVQEAISLCKD-----------LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA  366 (557)
T ss_pred             cccHHHHHHHHhh-----------cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence            9999999887764           23444455666777777777766666666655554433221110     0      


Q ss_pred             ------------------------chhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHH
Q 010063          455 ------------------------SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLV  510 (519)
Q Consensus       455 ------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~  510 (519)
                                              ..-....++|+++...|++.+|.+.|-+.-       |++-...  ..-...|+.|
T Consensus       367 s~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is-------~~~ikn~--~~Y~s~LArC  437 (557)
T KOG3785|consen  367 SYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRIS-------GPEIKNK--ILYKSMLARC  437 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhc-------Chhhhhh--HHHHHHHHHH
Confidence                                    000123467778888888888877765442       2221111  1223467888


Q ss_pred             HHHhhhc
Q 010063          511 WFCLLLY  517 (519)
Q Consensus       511 ~~~lg~~  517 (519)
                      |...|..
T Consensus       438 yi~nkkP  444 (557)
T KOG3785|consen  438 YIRNKKP  444 (557)
T ss_pred             HHhcCCc
Confidence            8776654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.35  E-value=6.7e-12  Score=88.84  Aligned_cols=78  Identities=29%  Similarity=0.338  Sum_probs=71.3

Q ss_pred             ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010063          411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI  489 (519)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  489 (519)
                      ||..+.++.++|.+|..+|++++|+.+|++++++ .+..|++++.++.++.++|.++..+|++++|+++++++++++++
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k   78 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK   78 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence            5788999999999999999999999999999999 66667788889999999999999999999999999999999864

...

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.32  E-value=2.8e-10  Score=113.07  Aligned_cols=169  Identities=11%  Similarity=0.031  Sum_probs=145.8

Q ss_pred             HHHHHHHH-HHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063          119 LELFNEVK-SMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (519)
Q Consensus       119 ~~l~~~~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (519)
                      +.+..++. ..-..|....+...+-++++..+.       -+..+.++..+|.+....|.+++|+..++.++++.     
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-----  116 (694)
T PRK15179         49 RELLQQARQVLERHAAVHKPAAALPELLDYVRR-------YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-----  116 (694)
T ss_pred             HHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHh-------ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-----
Confidence            44555553 345667777777777777777665       66778999999999999999999999999999887     


Q ss_pred             CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010063          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (519)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (519)
                        |+...+...++.++.+.+++++|+..+++++..        .|+....++.+|.++...|++++|+..|++++.-   
T Consensus       117 --Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~---  183 (694)
T PRK15179        117 --PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ---  183 (694)
T ss_pred             --CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc---
Confidence              777778999999999999999999999999885        3555788999999999999999999999999873   


Q ss_pred             hcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063          278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (519)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (519)
                           +|....++.++|.++...|+.++|...|+++++..
T Consensus       184 -----~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        184 -----HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence                 56778899999999999999999999999999864

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.30  E-value=4.5e-10  Score=111.61  Aligned_cols=156  Identities=9%  Similarity=0.084  Sum_probs=132.7

Q ss_pred             CChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 010063          176 GDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL  255 (519)
Q Consensus       176 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  255 (519)
                      |....+...+-++.....    +.+....++..||.+....|.+++|..+++.++++.        |+...+..+++.++
T Consensus        63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--------Pd~~~a~~~~a~~L  130 (694)
T PRK15179         63 AAVHKPAAALPELLDYVR----RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--------PDSSEAFILMLRGV  130 (694)
T ss_pred             hhhcchHhhHHHHHHHHH----hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--------CCcHHHHHHHHHHH
Confidence            333344444444444442    235556789999999999999999999999999873        55578889999999


Q ss_pred             hhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 010063          256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL  335 (519)
Q Consensus       256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  335 (519)
                      .+.+++++|+..+++++..        .|+.+..++.+|.++...|++++|+..|++++.        .+|+...++.++
T Consensus       131 ~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~~~~~~  194 (694)
T PRK15179        131 KRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFENGYVGW  194 (694)
T ss_pred             HHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHHHHHHH
Confidence            9999999999999999986        678899999999999999999999999999997        357777899999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHH
Q 010063          336 AHAKCANGNAEEAVELYKKALRVI  359 (519)
Q Consensus       336 a~~~~~~g~~~~A~~~~~~al~~~  359 (519)
                      |..+...|+.++|...|+++++..
T Consensus       195 a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        195 AQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhh
Confidence            999999999999999999999884

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.30  E-value=7.2e-08  Score=87.23  Aligned_cols=371  Identities=15%  Similarity=0.093  Sum_probs=241.8

Q ss_pred             HHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH-HhcCChHHHHHHHHHHHhhhhh
Q 010063          118 LLELFNEVKSMIMMG--NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGY-VYIGDLKFVQSLLDMMSGIVDS  194 (519)
Q Consensus       118 ~~~l~~~~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~  194 (519)
                      ...++..|..+...|  +...++++++.....       .....-.+.+...+|.++ ....+++.|...++++..+.+.
T Consensus         7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~-------~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~   79 (629)
T KOG2300|consen    7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQF-------QISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKS   79 (629)
T ss_pred             HHHHHHHHHHHhhcCChhHHHHHHHHHHHhcc-------CChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcc
Confidence            344778888888888  888899888877654       222334566677777765 5578999999999999888777


Q ss_pred             cCCCchHHHHHHHHHHHHHHccc-cHHHHHHHHHHHHHHH----------------------------------------
Q 010063          195 LKDDEPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVL----------------------------------------  233 (519)
Q Consensus       195 ~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~----------------------------------------  233 (519)
                      ++.-......+...++.+|.... .+..+...+++++++.                                        
T Consensus        80 ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~  159 (629)
T KOG2300|consen   80 IPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADH  159 (629)
T ss_pred             cccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccch
Confidence            65543344445566666666655 5666666666666550                                        


Q ss_pred             --------------------------------------------------------------------------------
Q 010063          234 --------------------------------------------------------------------------------  233 (519)
Q Consensus       234 --------------------------------------------------------------------------------  233 (519)
                                                                                                      
T Consensus       160 ~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ  239 (629)
T KOG2300|consen  160 ICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQ  239 (629)
T ss_pred             hhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHH
Confidence                                                                                            


Q ss_pred             --------------HHhcCCCCHHHH--------HHHHHHHHH--HhhcCCHHHHHHHHHHHHHHHHHhcCCC--Ch---
Q 010063          234 --------------ESRYGKTSILLV--------TSLLGMAKV--LGSIGRAKKAVEIYHRVITILELNRGTE--SA---  284 (519)
Q Consensus       234 --------------~~~~~~~~~~~~--------~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~---  284 (519)
                                    ++.++.+.+...        .++..+-.+  -...|-+++|.++-++++...++....+  .+   
T Consensus       240 ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srils  319 (629)
T KOG2300|consen  240 DSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILS  319 (629)
T ss_pred             HHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence                          000111111100        011111111  1234667788888888877766654322  11   


Q ss_pred             -hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063          285 -DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN--DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (519)
Q Consensus       285 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (519)
                       .....+-.+..+-.-.|++.+|++-...+.+.+.+..++.  ....+.....+|......|.++.|+..|..|.+...+
T Consensus       320 m~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~  399 (629)
T KOG2300|consen  320 MFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES  399 (629)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH
Confidence             1123344566677778999999999999999887653211  1224556677888888899999999999999987543


Q ss_pred             hccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC-------ChhHHHHHHHHHHHHHhccCHHHH
Q 010063          362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE-------HPSFVTHLLNLAASYSRSKNFVEA  434 (519)
Q Consensus       362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A  434 (519)
                             ....+.+-.++|..|.+.|+-+.-.+.++.    .    ++.       ....+.+++..|...+.++++.||
T Consensus       400 -------~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~----i----~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEa  464 (629)
T KOG2300|consen  400 -------IDLQAFCNLNLAISYLRIGDAEDLYKALDL----I----GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEA  464 (629)
T ss_pred             -------HHHHHHHHHhHHHHHHHhccHHHHHHHHHh----c----CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHH
Confidence                   344566778999999998876544433332    1    222       112345667778888899999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHh
Q 010063          435 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCL  514 (519)
Q Consensus       435 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  514 (519)
                      ...+.+.+++....  ....-....+..|+.+....|+..++.+..+-++++..++  +|++-.  ......+-.+|...
T Consensus       465 K~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vq--Lws~si~~~L~~a~  538 (629)
T KOG2300|consen  465 KRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQ--LWSSSILTDLYQAL  538 (629)
T ss_pred             HHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHH--HHHHHHHHHHHHHh
Confidence            99999999976221  1123345566788999999999999999999999999876  444433  22233445555555


Q ss_pred             hh
Q 010063          515 LL  516 (519)
Q Consensus       515 g~  516 (519)
                      |+
T Consensus       539 g~  540 (629)
T KOG2300|consen  539 GE  540 (629)
T ss_pred             Cc
Confidence            54

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.28  E-value=1.1e-07  Score=85.79  Aligned_cols=337  Identities=11%  Similarity=0.019  Sum_probs=201.5

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhh--------
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV--------  192 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------  192 (519)
                      .+.-+..-++......|..++.+|+.+          -|..-..++.....--.+|+...|.++|++.....        
T Consensus       110 WlkYae~Emknk~vNhARNv~dRAvt~----------lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~s  179 (677)
T KOG1915|consen  110 WLKYAEFEMKNKQVNHARNVWDRAVTI----------LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLS  179 (677)
T ss_pred             HHHHHHHHHhhhhHhHHHHHHHHHHHh----------cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHH
Confidence            334444445556666666666666655          34444445544444445566666665555444321        


Q ss_pred             ------------------hhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010063          193 ------------------DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV  254 (519)
Q Consensus       193 ------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  254 (519)
                                        +..--.+|.... +...+..-...|+..-|...|++|++....     +..........|..
T Consensus       180 fI~fElRykeieraR~IYerfV~~HP~v~~-wikyarFE~k~g~~~~aR~VyerAie~~~~-----d~~~e~lfvaFA~f  253 (677)
T KOG1915|consen  180 FIKFELRYKEIERARSIYERFVLVHPKVSN-WIKYARFEEKHGNVALARSVYERAIEFLGD-----DEEAEILFVAFAEF  253 (677)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHheecccHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHH
Confidence                              111122344433 677777888889999999999999887532     23333444445555


Q ss_pred             HhhcCCHHHHHHHHHHHHHHHH---------------HhcC---------------------CCChhhHHHHHHHHHHHH
Q 010063          255 LGSIGRAKKAVEIYHRVITILE---------------LNRG---------------------TESADLVLPLFSLGSLFI  298 (519)
Q Consensus       255 ~~~~g~~~~A~~~~~~al~~~~---------------~~~~---------------------~~~~~~~~~~~~la~~~~  298 (519)
                      -..+..++.|.-+|+-|++...               +..|                     .++|....++...-.+-.
T Consensus       254 Ee~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e  333 (677)
T KOG1915|consen  254 EERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEE  333 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHH
Confidence            5666777777777776665422               1111                     234555667777777778


Q ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHH
Q 010063          299 KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK---CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM  375 (519)
Q Consensus       299 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  375 (519)
                      ..|+.+.-.+.|++|+.-..... ......-.+|..+-.++   ....+.+.+.++|+.++++.      +......+.+
T Consensus       334 ~~g~~~~Ire~yErAIanvpp~~-ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI------PHkkFtFaKi  406 (677)
T KOG1915|consen  334 SVGDKDRIRETYERAIANVPPAS-EKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI------PHKKFTFAKI  406 (677)
T ss_pred             hcCCHHHHHHHHHHHHccCCchh-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc------CcccchHHHH
Confidence            88999999999999987321100 00000111222222222   34788999999999999974      3345566677


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHH--------------------------HHHhhCCCChhHHHHHHHHHHHHHhcc
Q 010063          376 RIDLAELLHIVGRGQEGRELLEECLLI--------------------------TEKYKGKEHPSFVTHLLNLAASYSRSK  429 (519)
Q Consensus       376 ~~~la~~~~~~g~~~~A~~~~~~al~~--------------------------~~~~~~~~~~~~~~~~~~la~~~~~~g  429 (519)
                      +...|....++.+...|...+-.|+..                          +++.+ .-.|....++...|.+-..+|
T Consensus       407 WlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl-e~~Pe~c~~W~kyaElE~~Lg  485 (677)
T KOG1915|consen  407 WLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL-EFSPENCYAWSKYAELETSLG  485 (677)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH-hcChHhhHHHHHHHHHHHHhh
Confidence            777777777777777666665544432                          22221 245677777888888888888


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          430 NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       430 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                      +.+.|...|+-|++-    ..-+.|...  +......-...|.+++|..+|++.++..
T Consensus       486 dtdRaRaifelAi~q----p~ldmpell--wkaYIdFEi~~~E~ekaR~LYerlL~rt  537 (677)
T KOG1915|consen  486 DTDRARAIFELAISQ----PALDMPELL--WKAYIDFEIEEGEFEKARALYERLLDRT  537 (677)
T ss_pred             hHHHHHHHHHHHhcC----cccccHHHH--HHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence            888888888877651    011222222  2333444456788888888888887754

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.28  E-value=4.3e-11  Score=84.68  Aligned_cols=78  Identities=31%  Similarity=0.401  Sum_probs=70.0

Q ss_pred             chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010063          369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK  447 (519)
Q Consensus       369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  447 (519)
                      |+.++.++.++|.+|..+|++++|+.+|++++++ .+..|++++.++.++.++|.++...|++++|++++++++++.++
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k   78 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK   78 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence            4567889999999999999999999999999999 66667778889999999999999999999999999999998763

...

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.26  E-value=3.2e-10  Score=90.43  Aligned_cols=128  Identities=13%  Similarity=0.043  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc
Q 010063          349 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS  428 (519)
Q Consensus       349 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  428 (519)
                      ..++++++++.       |+      .+..+|.++...|++++|...|++++.+        .|....++..+|.++...
T Consensus        13 ~~~~~~al~~~-------p~------~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~   71 (144)
T PRK15359         13 EDILKQLLSVD-------PE------TVYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMML   71 (144)
T ss_pred             HHHHHHHHHcC-------HH------HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHH
Confidence            35677777762       11      1356899999999999999999999873        566778999999999999


Q ss_pred             cCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHH
Q 010063          429 KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFG  508 (519)
Q Consensus       429 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~  508 (519)
                      |++++|+..|++++.+        +|....++.++|.++...|++++|+..|++++++.     ++++..     +.+.|
T Consensus        72 g~~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-----p~~~~~-----~~~~~  133 (144)
T PRK15359         72 KEYTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-----YADASW-----SEIRQ  133 (144)
T ss_pred             hhHHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChHH-----HHHHH
Confidence            9999999999999983        46677888999999999999999999999999865     445433     56666


Q ss_pred             HHHHHhh
Q 010063          509 LVWFCLL  515 (519)
Q Consensus       509 ~~~~~lg  515 (519)
                      .+...++
T Consensus       134 ~~~~~l~  140 (144)
T PRK15359        134 NAQIMVD  140 (144)
T ss_pred             HHHHHHH
Confidence            6665443

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=99.26  E-value=3.9e-09  Score=106.92  Aligned_cols=214  Identities=18%  Similarity=0.130  Sum_probs=192.2

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCch
Q 010063          291 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS  370 (519)
Q Consensus       291 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  370 (519)
                      ...|......|.+.+|.+ .-+++......++.-+|..+..+..++.++...|++++|+..-.++.-+.++.  .+.+++
T Consensus       936 ~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~--~g~ds~ 1012 (1236)
T KOG1839|consen  936 PEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERV--LGKDSP 1012 (1236)
T ss_pred             hhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechh--ccCCCH
Confidence            345566666788888888 88888888888888999999999999999999999999999999988777764  678888


Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcC
Q 010063          371 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG  450 (519)
Q Consensus       371 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  450 (519)
                      .....+.+++......++...|...+.++..+..-..++++|..+.+..+++.++...++++.|+.+.+.|+...++..+
T Consensus      1013 ~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g 1092 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLG 1092 (1236)
T ss_pred             HHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcC
Confidence            88889999999999999999999999999999888888899999999999999999999999999999999999999999


Q ss_pred             CCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHH
Q 010063          451 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLF  507 (519)
Q Consensus       451 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l  507 (519)
                      +.+.....++..+++.....+++..|....+....++...+|++|..+.....+.++
T Consensus      1093 ~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~~~~~~ 1149 (1236)
T KOG1839|consen 1093 PKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESSEWLNL 1149 (1236)
T ss_pred             ccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhHHHHHH
Confidence            998899999999999999999999999999999999999999999988665433333

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.25  E-value=1.9e-10  Score=91.69  Aligned_cols=126  Identities=13%  Similarity=0.050  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccc
Q 010063          138 IDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE  217 (519)
Q Consensus       138 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  217 (519)
                      ..++++++++          .|..   +..+|.++...|++++|...|+.++...       |....++..+|.++...|
T Consensus        13 ~~~~~~al~~----------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g   72 (144)
T PRK15359         13 EDILKQLLSV----------DPET---VYASGYASWQEGDYSRAVIDFSWLVMAQ-------PWSWRAHIALAGTWMMLK   72 (144)
T ss_pred             HHHHHHHHHc----------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHh
Confidence            4567777776          5554   5578999999999999999999988664       555677999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 010063          218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF  297 (519)
Q Consensus       218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  297 (519)
                      ++++|+..|++++.+        .|....+++++|.++...|++++|+..|++++++        .|.....+.+.|.+.
T Consensus        73 ~~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--------~p~~~~~~~~~~~~~  136 (144)
T PRK15359         73 EYTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--------SYADASWSEIRQNAQ  136 (144)
T ss_pred             hHHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHH
Confidence            999999999999985        2444778999999999999999999999999987        455556666666654


Q ss_pred             Hh
Q 010063          298 IK  299 (519)
Q Consensus       298 ~~  299 (519)
                      ..
T Consensus       137 ~~  138 (144)
T PRK15359        137 IM  138 (144)
T ss_pred             HH
Confidence            43

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.23  E-value=4.9e-09  Score=88.37  Aligned_cols=150  Identities=14%  Similarity=0.192  Sum_probs=118.7

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010063          168 IALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS  247 (519)
Q Consensus       168 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  247 (519)
                      -+..|+..|+++......+....         +.         .-+...++.++++..+++++..        +|.....
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~~---------~~---------~~~~~~~~~~~~i~~l~~~L~~--------~P~~~~~   75 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLAD---------PL---------HQFASQQTPEAQLQALQDKIRA--------NPQNSEQ   75 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHhC---------cc---------ccccCchhHHHHHHHHHHHHHH--------CCCCHHH
Confidence            34568889998886444321110         00         0111366778888888888875        3444778


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH-HhCCC--HHHHHHHHHHHHHHHHHhcCCC
Q 010063          248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF-IKEGK--AVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~~~~~~~~  324 (519)
                      +..+|.+|...|++++|+..|++++++        .|.....+..+|.++ ...|+  +++|...++++++.        
T Consensus        76 w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--------  139 (198)
T PRK10370         76 WALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--------  139 (198)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--------
Confidence            999999999999999999999999997        566788999999974 67787  59999999999985        


Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010063          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (519)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (519)
                      +|....++.++|..+...|++++|+.+++++++..
T Consensus       140 dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        140 DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            56677799999999999999999999999999883

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.20  E-value=2.3e-09  Score=89.52  Aligned_cols=165  Identities=16%  Similarity=0.149  Sum_probs=135.8

Q ss_pred             ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (519)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (519)
                      .|+...+ ..++..+...|+-+.+..+..+.....       +....++..+|......|++.+|+..++++...     
T Consensus        63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-------~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-----  129 (257)
T COG5010          63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-------PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-----  129 (257)
T ss_pred             CcchHHH-HHHHHHHHhcccccchHHHHhhhhccC-------cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----
Confidence            6666666 888999999999999888887754332       333334556899999999999999999999875     


Q ss_pred             CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (519)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (519)
                         .|....++..+|.+|.+.|++++|..-|.+++++.        +....+.+|+|..+.-.|+++.|..++..+... 
T Consensus       130 ---~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~-  197 (257)
T COG5010         130 ---APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS-  197 (257)
T ss_pred             ---CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC-
Confidence               24447889999999999999999999999999983        445678999999999999999999999998762 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 010063          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK  354 (519)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  354 (519)
                             .+....+..|++.+....|++++|.....+
T Consensus       198 -------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         198 -------PAADSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             -------CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence                   333455778999999999999999887654

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.18  E-value=4e-07  Score=80.82  Aligned_cols=288  Identities=14%  Similarity=0.059  Sum_probs=192.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCH
Q 010063          163 AILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI  242 (519)
Q Consensus       163 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  242 (519)
                      .....-|..-+..|+|.+|++...+..+..     +.|.+  .+..-+..-.++|+++.+-.++.++-+..     ++  
T Consensus        85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~-----e~p~l--~~l~aA~AA~qrgd~~~an~yL~eaae~~-----~~--  150 (400)
T COG3071          85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHG-----EQPVL--AYLLAAEAAQQRGDEDRANRYLAEAAELA-----GD--  150 (400)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHhhhcC-----cchHH--HHHHHHHHHHhcccHHHHHHHHHHHhccC-----CC--
Confidence            334455666678999999999998865543     22333  45666778889999999999999887642     12  


Q ss_pred             HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC
Q 010063          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (519)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (519)
                      .........+.+....|+++.|..-..++++.        .|....++.....+|...|++.+...+..+.-+..  .  
T Consensus       151 ~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~--~--  218 (400)
T COG3071         151 DTLAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG--L--  218 (400)
T ss_pred             chHHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc--C--
Confidence            22445667899999999999999999999886        56667788888999999999999998887765521  1  


Q ss_pred             CCChhHHHHHHHHHHH--HHHCCCHHHHHH---HHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010063          323 ENDGRVGMAMCSLAHA--KCANGNAEEAVE---LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  397 (519)
Q Consensus       323 ~~~~~~~~~~~~la~~--~~~~g~~~~A~~---~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (519)
                       -+.....-+.+.+..  +...++-+.+..   +++..-...       ..++.   +...++.-+...|+.++|.+..+
T Consensus       219 -l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l-------r~~p~---l~~~~a~~li~l~~~~~A~~~i~  287 (400)
T COG3071         219 -LSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL-------RNDPE---LVVAYAERLIRLGDHDEAQEIIE  287 (400)
T ss_pred             -CChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHh-------hcChh---HHHHHHHHHHHcCChHHHHHHHH
Confidence             122222222222221  222222222322   222211111       12222   22567888999999999999999


Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHH
Q 010063          398 ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE  477 (519)
Q Consensus       398 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  477 (519)
                      ++++..      .++.    +..+.. ...-+++..=++..++.+.        .||+....+..||..+.+.+.+.+|.
T Consensus       288 ~~Lk~~------~D~~----L~~~~~-~l~~~d~~~l~k~~e~~l~--------~h~~~p~L~~tLG~L~~k~~~w~kA~  348 (400)
T COG3071         288 DALKRQ------WDPR----LCRLIP-RLRPGDPEPLIKAAEKWLK--------QHPEDPLLLSTLGRLALKNKLWGKAS  348 (400)
T ss_pred             HHHHhc------cChh----HHHHHh-hcCCCCchHHHHHHHHHHH--------hCCCChhHHHHHHHHHHHhhHHHHHH
Confidence            988742      2232    111111 2355677776666676665        34555577889999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhc
Q 010063          478 KLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLY  517 (519)
Q Consensus       478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~  517 (519)
                      .+++.+++..        ++   +..+..+|.++..+|+.
T Consensus       349 ~~leaAl~~~--------~s---~~~~~~la~~~~~~g~~  377 (400)
T COG3071         349 EALEAALKLR--------PS---ASDYAELADALDQLGEP  377 (400)
T ss_pred             HHHHHHHhcC--------CC---hhhHHHHHHHHHHcCCh
Confidence            9999888754        11   13467889999988874

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.16  E-value=1.2e-08  Score=86.02  Aligned_cols=149  Identities=16%  Similarity=0.201  Sum_probs=116.2

Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 010063          251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  330 (519)
Q Consensus       251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  330 (519)
                      -+..|...|+++......++..       ++..            -+...++.++++..++++++.        +|....
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~-------~~~~------------~~~~~~~~~~~i~~l~~~L~~--------~P~~~~   74 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLA-------DPLH------------QFASQQTPEAQLQALQDKIRA--------NPQNSE   74 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHh-------Cccc------------cccCchhHHHHHHHHHHHHHH--------CCCCHH
Confidence            3556888899887644432111       1110            111367778999999998884        577778


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH-HHcCC--hHHHHHHHHHHHHHHHHhh
Q 010063          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL-HIVGR--GQEGRELLEECLLITEKYK  407 (519)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~~~~~  407 (519)
                      .|..+|.+|...|++++|+..|++++.+       .+++   ..++..+|.++ ...|+  +++|...++++++.     
T Consensus        75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-------~P~~---~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~-----  139 (198)
T PRK10370         75 QWALLGEYYLWRNDYDNALLAYRQALQL-------RGEN---AELYAALATVLYYQAGQHMTPQTREMIDKALAL-----  139 (198)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-----
Confidence            9999999999999999999999999997       3444   34568889875 67787  59999999999984     


Q ss_pred             CCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063          408 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (519)
Q Consensus       408 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (519)
                         +|....++..+|..+...|++++|+.+++++++.
T Consensus       140 ---dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        140 ---DANEVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             ---CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence               5666789999999999999999999999999985

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.16  E-value=9.5e-09  Score=103.16  Aligned_cols=234  Identities=12%  Similarity=0.035  Sum_probs=161.3

Q ss_pred             CCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Q 010063          155 GNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE  234 (519)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  234 (519)
                      +.-.|....++..+...|...|++++|...++.++...       |.....++.+|.++.+.+++.++...  .++....
T Consensus        24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-------P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~   94 (906)
T PRK14720         24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-------KKSISALYISGILSLSRRPLNDSNLL--NLIDSFS   94 (906)
T ss_pred             ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc
Confidence            45578889999999999999999999999999877654       56666788999999999998888776  5555432


Q ss_pred             HhcC-----------CCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCH
Q 010063          235 SRYG-----------KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA  303 (519)
Q Consensus       235 ~~~~-----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  303 (519)
                      ....           .+.+..-.+++.+|.||-.+|+.++|...|++++++        +|..+.+++++|..|... +.
T Consensus        95 ~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-dL  165 (906)
T PRK14720         95 QNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-DK  165 (906)
T ss_pred             cccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-hH
Confidence            2100           011223358889999999999999999999999987        477789999999999999 99


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH
Q 010063          304 VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL  383 (519)
Q Consensus       304 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~  383 (519)
                      ++|+.++.+|+..+-..-  ........|.  ..+.....+++.=....++.+..        .........+.-+-..|
T Consensus       166 ~KA~~m~~KAV~~~i~~k--q~~~~~e~W~--k~~~~~~~d~d~f~~i~~ki~~~--------~~~~~~~~~~~~l~~~y  233 (906)
T PRK14720        166 EKAITYLKKAIYRFIKKK--QYVGIEEIWS--KLVHYNSDDFDFFLRIERKVLGH--------REFTRLVGLLEDLYEPY  233 (906)
T ss_pred             HHHHHHHHHHHHHHHhhh--cchHHHHHHH--HHHhcCcccchHHHHHHHHHHhh--------hccchhHHHHHHHHHHH
Confidence            999999999988643210  0111111121  11222222333322222222221        11223344556667888


Q ss_pred             HHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 010063          384 HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS  426 (519)
Q Consensus       384 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  426 (519)
                      ...++|++++.+++.+++..        +....+...++.+|.
T Consensus       234 ~~~~~~~~~i~iLK~iL~~~--------~~n~~a~~~l~~~y~  268 (906)
T PRK14720        234 KALEDWDEVIYILKKILEHD--------NKNNKAREELIRFYK  268 (906)
T ss_pred             hhhhhhhHHHHHHHHHHhcC--------CcchhhHHHHHHHHH
Confidence            88999999999999988753        334456777777776

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.15  E-value=2e-09  Score=101.94  Aligned_cols=227  Identities=16%  Similarity=0.105  Sum_probs=172.0

Q ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (519)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (519)
                      ..-..++..+...|-..+|+..+++.-                .+.....||...|+..+|..+..+-++         .
T Consensus       399 q~q~~laell~slGitksAl~I~Erle----------------mw~~vi~CY~~lg~~~kaeei~~q~le---------k  453 (777)
T KOG1128|consen  399 QLQRLLAELLLSLGITKSALVIFERLE----------------MWDPVILCYLLLGQHGKAEEINRQELE---------K  453 (777)
T ss_pred             hHHHHHHHHHHHcchHHHHHHHHHhHH----------------HHHHHHHHHHHhcccchHHHHHHHHhc---------C
Confidence            346678899999999999998887642                344567888999999999888777654         2


Q ss_pred             hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010063          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (519)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (519)
                      +..+..|..+|.+.....-|++|.++.+..              .+.+...+|......++|.++...++.++++     
T Consensus       454 ~~d~~lyc~LGDv~~d~s~yEkawElsn~~--------------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~-----  514 (777)
T KOG1128|consen  454 DPDPRLYCLLGDVLHDPSLYEKAWELSNYI--------------SARAQRSLALLILSNKDFSEADKHLERSLEI-----  514 (777)
T ss_pred             CCcchhHHHhhhhccChHHHHHHHHHhhhh--------------hHHHHHhhccccccchhHHHHHHHHHHHhhc-----
Confidence            333556666666655554444444444332              2235555666667789999999999999987     


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (519)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (519)
                           .+....+|+.+|.+..+.++++.|...|..++..        .|+...++++++..|...|+-.+|...+++|++
T Consensus       515 -----nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK  581 (777)
T KOG1128|consen  515 -----NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK  581 (777)
T ss_pred             -----CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence                 3444667899999999999999999999998874        577789999999999999999999999999998


Q ss_pred             HHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCC
Q 010063          444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS  495 (519)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  495 (519)
                      .-        .....++.|...+....|.+++|++.+.+.+.+.+...++++
T Consensus       582 cn--------~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~v  625 (777)
T KOG1128|consen  582 CN--------YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEV  625 (777)
T ss_pred             cC--------CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchh
Confidence            32        233344566667778999999999999999998876554333

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.15  E-value=2.5e-08  Score=100.16  Aligned_cols=250  Identities=15%  Similarity=0.063  Sum_probs=176.2

Q ss_pred             CCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010063          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (519)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (519)
                      +.-.|....++..|...+...+++++|+...+.+++.        +|.....++.+|.++...+++.++...  .++.+.
T Consensus        24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~   93 (906)
T PRK14720         24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSF   93 (906)
T ss_pred             ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc
Confidence            4555777788999999999999999999999987764        455677888999999999998888776  555543


Q ss_pred             HHhcC-----------CCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC
Q 010063          276 ELNRG-----------TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN  344 (519)
Q Consensus       276 ~~~~~-----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  344 (519)
                      .....           .+.+..-.++..+|.+|..+|+.++|...+++++++        +|..+.+++++|..|... +
T Consensus        94 ~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-d  164 (906)
T PRK14720         94 SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-D  164 (906)
T ss_pred             ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-h
Confidence            22110           012333468899999999999999999999999985        477888999999999999 9


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 010063          345 AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS  424 (519)
Q Consensus       345 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  424 (519)
                      +++|+.++.+|+..+-..    .........|..+  +...-.+.+.=..+.++.+.    ..  ........+.-+=..
T Consensus       165 L~KA~~m~~KAV~~~i~~----kq~~~~~e~W~k~--~~~~~~d~d~f~~i~~ki~~----~~--~~~~~~~~~~~l~~~  232 (906)
T PRK14720        165 KEKAITYLKKAIYRFIKK----KQYVGIEEIWSKL--VHYNSDDFDFFLRIERKVLG----HR--EFTRLVGLLEDLYEP  232 (906)
T ss_pred             HHHHHHHHHHHHHHHHhh----hcchHHHHHHHHH--HhcCcccchHHHHHHHHHHh----hh--ccchhHHHHHHHHHH
Confidence            999999999999875432    1111111122111  11222222222222222221    11  122344566667788


Q ss_pred             HHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          425 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       425 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                      |...++|++++..++.++++        .|....+...++.+|.  +.|.. ...+++.+++.
T Consensus       233 y~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s  284 (906)
T PRK14720        233 YKALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMS  284 (906)
T ss_pred             HhhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH--HHccC-cchHHHHHHHh
Confidence            99999999999999999984        3445567888999888  55554 67777777765

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.14  E-value=3.5e-07  Score=85.83  Aligned_cols=243  Identities=13%  Similarity=0.045  Sum_probs=162.0

Q ss_pred             cCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010063          175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV  254 (519)
Q Consensus       175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  254 (519)
                      .|+..+-+..|.++.....-. .........+..+|..|...|+.+.|...++++...-    -+.-.+++.++...|..
T Consensus       360 e~~~~~~i~tyteAv~~vdP~-ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~----y~~v~dLa~vw~~waem  434 (835)
T KOG2047|consen  360 EGNAAEQINTYTEAVKTVDPK-KAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP----YKTVEDLAEVWCAWAEM  434 (835)
T ss_pred             cCChHHHHHHHHHHHHccCcc-cCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC----ccchHHHHHHHHHHHHH
Confidence            456666666666665543211 1112234568899999999999999999999998752    11224668889999999


Q ss_pred             HhhcCCHHHHHHHHHHHHHHHHH----hcCCCChhh------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          255 LGSIGRAKKAVEIYHRVITILEL----NRGTESADL------VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       255 ~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (519)
                      -....+++.|..+.++|...-..    ..+...|..      ..++..++......|-++.....|++.+++.-     .
T Consensus       435 Elrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-----a  509 (835)
T KOG2047|consen  435 ELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-----A  509 (835)
T ss_pred             HHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-----C
Confidence            99999999999999988754211    111122222      23455566666777888888888888887631     2


Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010063          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (519)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (519)
                      .|   ....|.|..+....-+++|.+.|++.+.+++     .|....+...|......-...-..+.|..+|++|++.+ 
T Consensus       510 TP---qii~NyAmfLEeh~yfeesFk~YErgI~LFk-----~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C-  580 (835)
T KOG2047|consen  510 TP---QIIINYAMFLEEHKYFEESFKAYERGISLFK-----WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC-  580 (835)
T ss_pred             CH---HHHHHHHHHHHhhHHHHHHHHHHHcCCccCC-----CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-
Confidence            23   3456778888888889999999999998853     34444444454444444344457899999999999854 


Q ss_pred             HhhCCCChhHH-HHHHHHHHHHHhccCHHHHHHHHHHHH
Q 010063          405 KYKGKEHPSFV-THLLNLAASYSRSKNFVEAERLLRICL  442 (519)
Q Consensus       405 ~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al  442 (519)
                            .|..+ ..+...|.+-..-|--..|+..|++|-
T Consensus       581 ------pp~~aKtiyLlYA~lEEe~GLar~amsiyerat  613 (835)
T KOG2047|consen  581 ------PPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT  613 (835)
T ss_pred             ------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                  23333 334445556666677777777777653

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.14  E-value=9.5e-08  Score=83.09  Aligned_cols=289  Identities=18%  Similarity=0.170  Sum_probs=185.6

Q ss_pred             HHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHH
Q 010063          127 SMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAIL  206 (519)
Q Consensus       127 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  206 (519)
                      .+....||..|+.+++-.+..         +..+...+-..+|.|++..|+|++|...|.-+..-     ++.|  +...
T Consensus        31 dfls~rDytGAislLefk~~~---------~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-----~~~~--~el~   94 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNL---------DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-----DDAP--AELG   94 (557)
T ss_pred             HHHhcccchhHHHHHHHhhcc---------chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-----CCCC--cccc
Confidence            456788999999998877654         12333456678999999999999999999876552     1212  3347


Q ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 010063          207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL  286 (519)
Q Consensus       207 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  286 (519)
                      .+++.+++..|.|.+|.....++         ++.|...+.+..++.   +.|+-++=...- ..+.           +.
T Consensus        95 vnLAcc~FyLg~Y~eA~~~~~ka---------~k~pL~~RLlfhlah---klndEk~~~~fh-~~Lq-----------D~  150 (557)
T KOG3785|consen   95 VNLACCKFYLGQYIEAKSIAEKA---------PKTPLCIRLLFHLAH---KLNDEKRILTFH-SSLQ-----------DT  150 (557)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhC---------CCChHHHHHHHHHHH---HhCcHHHHHHHH-HHHh-----------hh
Confidence            78999999999999998877654         345666666666554   344443333222 2221           11


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCC
Q 010063          287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS  366 (519)
Q Consensus       287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  366 (519)
                      ..-...|+.+.+..-.|.+|++.|.+.+.        ++|........+|.+|.++.-++-+.+.+.--+..       .
T Consensus       151 ~EdqLSLAsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-------~  215 (557)
T KOG3785|consen  151 LEDQLSLASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-------F  215 (557)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-------C
Confidence            23345677777778889999999999887        56777777788999999999999888777665554       2


Q ss_pred             CCchHHHHHHHHHHHHHHH--cCChH----------------HHHHHHH----------HHHHHHHHhhCCCChhHHHHH
Q 010063          367 LDDSIMENMRIDLAELLHI--VGRGQ----------------EGRELLE----------ECLLITEKYKGKEHPSFVTHL  418 (519)
Q Consensus       367 ~~~~~~~~~~~~la~~~~~--~g~~~----------------~A~~~~~----------~al~~~~~~~~~~~~~~~~~~  418 (519)
                      |+.+...   +..+-.+.+  .|+..                .+..+.+          -|+......    .....++.
T Consensus       216 pdStiA~---NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L----~~~IPEAR  288 (557)
T KOG3785|consen  216 PDSTIAK---NLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSL----MKHIPEAR  288 (557)
T ss_pred             CCcHHHH---HHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHH----HhhChHhh
Confidence            3443321   223333322  22222                2222211          111111111    11234677


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010063          419 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  488 (519)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  488 (519)
                      .+|...|..+++..+|..+.+..           .|....-+..-|.+....|+--...++++-|.+.+.
T Consensus       289 lNL~iYyL~q~dVqeA~~L~Kdl-----------~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffq  347 (557)
T KOG3785|consen  289 LNLIIYYLNQNDVQEAISLCKDL-----------DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQ  347 (557)
T ss_pred             hhheeeecccccHHHHHHHHhhc-----------CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Confidence            88999999999999998876531           244444456667788888887777777766655543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.14  E-value=1.6e-07  Score=90.46  Aligned_cols=288  Identities=16%  Similarity=0.134  Sum_probs=150.8

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHh---cCCCCHH
Q 010063          167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR---YGKTSIL  243 (519)
Q Consensus       167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~  243 (519)
                      .+-..|...|.+++|.++.+.         .+...+...|++.+..+...++.+.|+++|+++-....+.   +..+.+.
T Consensus       831 LlNKlyQs~g~w~eA~eiAE~---------~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~  901 (1416)
T KOG3617|consen  831 LLNKLYQSQGMWSEAFEIAET---------KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQ  901 (1416)
T ss_pred             HHHHHHHhcccHHHHHHHHhh---------ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHH
Confidence            344556677777777665543         2334455568999999999999999999999863221111   0111110


Q ss_pred             ---------HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc-----CC--------CChhhHHHHHHHHHHHHhCC
Q 010063          244 ---------LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR-----GT--------ESADLVLPLFSLGSLFIKEG  301 (519)
Q Consensus       244 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~--------~~~~~~~~~~~la~~~~~~g  301 (519)
                               -...+...|..+...|+.+.|+.+|..|-+.+....     |.        +......+.+.||+.|...|
T Consensus       902 ~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g  981 (1416)
T KOG3617|consen  902 IEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDG  981 (1416)
T ss_pred             HHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhH
Confidence                     123455678888889999999999988765542211     00        00111223445555555566


Q ss_pred             CHHHHHHHHHHHHHHHHHh--cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 010063          302 KAVDAESVFSRILKIYTKV--YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL  379 (519)
Q Consensus       302 ~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l  379 (519)
                      ++.+|+.+|.+|......+  ..+++  .-.-+.+++.. ....+.-.|..||++.=-.+                 ..-
T Consensus       982 ~v~~Av~FfTrAqafsnAIRlcKEnd--~~d~L~nlal~-s~~~d~v~aArYyEe~g~~~-----------------~~A 1041 (1416)
T KOG3617|consen  982 DVVKAVKFFTRAQAFSNAIRLCKEND--MKDRLANLALM-SGGSDLVSAARYYEELGGYA-----------------HKA 1041 (1416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHhh-cCchhHHHHHHHHHHcchhh-----------------hHH
Confidence            6666655555443321100  00000  00111111111 01112222333333211000                 111


Q ss_pred             HHHHHHcCChHHHHHHHH-----HHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHH------HHHHHHHHh
Q 010063          380 AELLHIVGRGQEGRELLE-----ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR------ICLDIMTKT  448 (519)
Q Consensus       380 a~~~~~~g~~~~A~~~~~-----~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~------~al~~~~~~  448 (519)
                      ..+|.+.|.+.+|+++.=     .++++..+-+.+.  ..+..+..-+..+....+|++|..++-      .|+.+....
T Consensus      1042 VmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~--sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~ 1119 (1416)
T KOG3617|consen 1042 VMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG--SDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNR 1119 (1416)
T ss_pred             HHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC--CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            234555566666555432     2333333322221  123455666788888889999887654      444443221


Q ss_pred             -----------cCC------CCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010063          449 -----------VGP------DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  485 (519)
Q Consensus       449 -----------~~~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  485 (519)
                                 ..+      +.......+..+|.++.++|.|..|-+-|.+|=+
T Consensus      1120 nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1120 NVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD 1173 (1416)
T ss_pred             CCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh
Confidence                       111      1123355678899999999999999999987743

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.14  E-value=2.2e-07  Score=76.59  Aligned_cols=226  Identities=15%  Similarity=0.101  Sum_probs=168.5

Q ss_pred             CCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 010063          239 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT  318 (519)
Q Consensus       239 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  318 (519)
                      ++....+..|..-+.+|....+|++|...+.++.+..+...  ...+.+..+-..+.+..++..+.++..+++++..++.
T Consensus        25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnr--slfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~  102 (308)
T KOG1585|consen   25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR--SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYV  102 (308)
T ss_pred             CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            34444556666778888999999999999999998877643  3445677888889999999999999999999999998


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010063          319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  398 (519)
Q Consensus       319 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  398 (519)
                      +.   ..|+.+..-...+--....-++++|+.+|++++.+.+..    .........+...++++.+..++++|-..+.+
T Consensus       103 E~---GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~----dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK  175 (308)
T KOG1585|consen  103 EC---GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED----DRDQMAFELYGKCSRVLVRLEKFTEAATAFLK  175 (308)
T ss_pred             Hh---CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence            87   456655444555555667889999999999999998762    33344455667889999999999999988888


Q ss_pred             HHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHH
Q 010063          399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK  478 (519)
Q Consensus       399 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  478 (519)
                      -..+..+..  ..+.....+.....+|.-..+|..|..+++...++    .+-..++...++.+|-..| ..|+.++..+
T Consensus       176 e~~~~~~~~--~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ay-d~gD~E~~~k  248 (308)
T KOG1585|consen  176 EGVAADKCD--AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAY-DEGDIEEIKK  248 (308)
T ss_pred             hhhHHHHHh--hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence            776665553  23334445555566777778999999999886653    2333456666777776654 5688887766


Q ss_pred             HH
Q 010063          479 LV  480 (519)
Q Consensus       479 ~~  480 (519)
                      .+
T Consensus       249 vl  250 (308)
T KOG1585|consen  249 VL  250 (308)
T ss_pred             HH
Confidence            54

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.13  E-value=4.1e-08  Score=83.55  Aligned_cols=169  Identities=18%  Similarity=0.191  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (519)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (519)
                      ...++..|...+..|+|.+|+..|++.+..       .+.++....+...+|.++...|++++|+..+++.+...    +
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-------~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y----P   73 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDR-------YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY----P   73 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----T
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----C
Confidence            455899999999999999999999999887       56688888999999999999999999999999988776    6


Q ss_pred             CchHHHHHHHHHHHHHHccc-----------cHHHHHHHHHHHHHHHHHhcCCCCH--------------HHHHHHHHHH
Q 010063          198 DEPLLDAILLHMGSMYSTLE-----------NYEKSMLVYQRVINVLESRYGKTSI--------------LLVTSLLGMA  252 (519)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~--------------~~~~~~~~la  252 (519)
                      .++....+++.+|.++....           ...+|+..++..+....     +++              .++.--..+|
T Consensus        74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP-----~S~y~~~A~~~l~~l~~~la~~e~~ia  148 (203)
T PF13525_consen   74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYP-----NSEYAEEAKKRLAELRNRLAEHELYIA  148 (203)
T ss_dssp             T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-T-----TSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCc-----CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67788888999998876543           34477777777776542     222              2233345679


Q ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHH
Q 010063          253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE  307 (519)
Q Consensus       253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  307 (519)
                      ..|...|.+..|+..++.+++.+     ++.+....++..++..|..+|..+.|.
T Consensus       149 ~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  149 RFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            99999999999999999998874     345666788999999999999988554

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.12  E-value=7.2e-08  Score=81.84  Aligned_cols=229  Identities=17%  Similarity=0.133  Sum_probs=165.3

Q ss_pred             HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHH
Q 010063          126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI  205 (519)
Q Consensus       126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  205 (519)
                      ..+.+..+|..|++++..-.+.          .|.....+..+|.||+...+|..|...|++.-...       |.....
T Consensus        18 y~lI~d~ry~DaI~~l~s~~Er----------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~-------P~~~qY   80 (459)
T KOG4340|consen   18 YRLIRDARYADAIQLLGSELER----------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH-------PELEQY   80 (459)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhc----------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-------hHHHHH
Confidence            3456777889999888766555          66677788999999999999999999999876554       777766


Q ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (519)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (519)
                      ...-+..+++.+.+..|+........        +......++..-+.+.+..+++..+....++.          ....
T Consensus        81 rlY~AQSLY~A~i~ADALrV~~~~~D--------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl----------p~en  142 (459)
T KOG4340|consen   81 RLYQAQSLYKACIYADALRVAFLLLD--------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL----------PSEN  142 (459)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHhcC--------CHHHHHHHHHHHHHHhcccccCcchHHHHHhc----------cCCC
Confidence            66778888899999999887654422        22333445555677777888888777666543          1234


Q ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc--
Q 010063          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN--  363 (519)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--  363 (519)
                      .+....+.|.+.++.|++++|++-|+.+++.     +.-.|.   .-++++.++++.|+++.|+++..+.++.--+..  
T Consensus       143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqv-----sGyqpl---lAYniALaHy~~~qyasALk~iSEIieRG~r~HPE  214 (459)
T KOG4340|consen  143 EADGQINLGCLLYKEGQYEAAVQKFQAALQV-----SGYQPL---LAYNLALAHYSSRQYASALKHISEIIERGIRQHPE  214 (459)
T ss_pred             ccchhccchheeeccccHHHHHHHHHHHHhh-----cCCCch---hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence            5778889999999999999999999999885     222333   346789999999999999999988876543320  


Q ss_pred             ------cCCCCc-----------hHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010063          364 ------YMSLDD-----------SIMENMRIDLAELLHIVGRGQEGRELLE  397 (519)
Q Consensus       364 ------~~~~~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (519)
                            ..++|.           ..+..+++..+.++.+.|+++.|.+.+.
T Consensus       215 lgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  215 LGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             cCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence                  001111           1223444556778888899888877654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.11  E-value=5.5e-09  Score=86.39  Aligned_cols=117  Identities=15%  Similarity=0.135  Sum_probs=94.6

Q ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (519)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (519)
                      ...+..++.+|.++...|++++|+..+++++.+.     ++++....++.++|.++...|++++|+..+++++.+     
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-----  101 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-----  101 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence            4456678999999999999999999999999873     234455678999999999999999999999999987     


Q ss_pred             CCCChhhHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 010063          280 GTESADLVLPLFSLGSLFI-------KEGKAVDAESVFSRILKIYTKVYGENDGRVG  329 (519)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  329 (519)
                         .|.....+.++|.++.       ..|++++|...+.+++..+++..+.+++...
T Consensus       102 ---~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~  155 (168)
T CHL00033        102 ---NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI  155 (168)
T ss_pred             ---CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence               2333445555555555       9999999999999999998888776664443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.10  E-value=1.7e-07  Score=81.72  Aligned_cols=186  Identities=17%  Similarity=0.147  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC
Q 010063          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (519)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (519)
                      ...+..+...+..|++++|+..|++.+..       .+..+....+...+|.+|+..+++++|+..+++.++..    ++
T Consensus        33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~-------yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~----P~  101 (243)
T PRK10866         33 SEIYATAQQKLQDGNWKQAITQLEALDNR-------YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN----PT  101 (243)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----cC
Confidence            33778899999999999999999999887       55677777888999999999999999999999998875    77


Q ss_pred             chHHHHHHHHHHHHHHccc---------------c---HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCC
Q 010063          199 EPLLDAILLHMGSMYSTLE---------------N---YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR  260 (519)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  260 (519)
                      +|....+++.+|.++...+               +   ..+|+..+++.++.+     |+++..                
T Consensus       102 ~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya----------------  160 (243)
T PRK10866        102 HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYT----------------  160 (243)
T ss_pred             CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhH----------------
Confidence            7888888999998764443               1   234555555555442     222221                


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 010063          261 AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC  340 (519)
Q Consensus       261 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  340 (519)
                       .+|...+..+...           .+.--..+|..|.+.|.|..|+.-++.+++.+     ++.+....++..++..|.
T Consensus       161 -~~A~~rl~~l~~~-----------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~  223 (243)
T PRK10866        161 -TDATKRLVFLKDR-----------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYR  223 (243)
T ss_pred             -HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHH
Confidence             2222222222111           12333467888888999999999888888764     345667788888999999


Q ss_pred             HCCCHHHHHHHHH
Q 010063          341 ANGNAEEAVELYK  353 (519)
Q Consensus       341 ~~g~~~~A~~~~~  353 (519)
                      ..|..++|.....
T Consensus       224 ~lg~~~~a~~~~~  236 (243)
T PRK10866        224 QLQLNAQADKVAK  236 (243)
T ss_pred             HcCChHHHHHHHH
Confidence            9999988877654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.08  E-value=6.8e-09  Score=98.49  Aligned_cols=218  Identities=15%  Similarity=0.156  Sum_probs=163.0

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHH
Q 010063          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD  203 (519)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  203 (519)
                      .+..+...|-...|+..+++                  ...+.....||...|+..+|..+..+-++ .       +..+
T Consensus       404 laell~slGitksAl~I~Er------------------lemw~~vi~CY~~lg~~~kaeei~~q~le-k-------~~d~  457 (777)
T KOG1128|consen  404 LAELLLSLGITKSALVIFER------------------LEMWDPVILCYLLLGQHGKAEEINRQELE-K-------DPDP  457 (777)
T ss_pred             HHHHHHHcchHHHHHHHHHh------------------HHHHHHHHHHHHHhcccchHHHHHHHHhc-C-------CCcc
Confidence            34445556666666655554                  33556667788888888888877766544 1       2222


Q ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (519)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (519)
                      ..|..+|.+....       .+|+++.++.+.       ..+.+...+|......++|.++.++++..+++        .
T Consensus       458 ~lyc~LGDv~~d~-------s~yEkawElsn~-------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------n  515 (777)
T KOG1128|consen  458 RLYCLLGDVLHDP-------SLYEKAWELSNY-------ISARAQRSLALLILSNKDFSEADKHLERSLEI--------N  515 (777)
T ss_pred             hhHHHhhhhccCh-------HHHHHHHHHhhh-------hhHHHHHhhccccccchhHHHHHHHHHHHhhc--------C
Confidence            3355566655544       455555554322       12445666777777899999999999999997        6


Q ss_pred             hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010063          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (519)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (519)
                      |....+|+.+|.+....++++.|...|..++..        .|+...+|+|++..|...|+-.+|...+.++++-.    
T Consensus       516 plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn----  583 (777)
T KOG1128|consen  516 PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN----  583 (777)
T ss_pred             ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC----
Confidence            777899999999999999999999999999884        68888999999999999999999999999999863    


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh
Q 010063          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK  407 (519)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  407 (519)
                         .++   ..++.|.-.+....|.+++|++.+.+.+.+.+...
T Consensus       584 ---~~~---w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~  621 (777)
T KOG1128|consen  584 ---YQH---WQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK  621 (777)
T ss_pred             ---CCC---CeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence               223   33456777788899999999999999988776543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.08  E-value=6.7e-08  Score=82.25  Aligned_cols=170  Identities=18%  Similarity=0.204  Sum_probs=128.9

Q ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 010063          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  365 (519)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  365 (519)
                      ....++..|..+...|++.+|+..|++.+..+     +.++....+...+|.++...|++++|+..+++.++..      
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y------   72 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY------   72 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-------
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------
Confidence            35678889999999999999999999998864     4567788899999999999999999999999999874      


Q ss_pred             CCCchHHHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHHHHHhhCCCChh--------------HHHHHHH
Q 010063          366 SLDDSIMENMRIDLAELLHIVG-----------RGQEGRELLEECLLITEKYKGKEHPS--------------FVTHLLN  420 (519)
Q Consensus       366 ~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~--------------~~~~~~~  420 (519)
                       |.++....+++.+|.++..+.           ...+|+..|+..+..+.     +++.              .+.--..
T Consensus        73 -P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP-----~S~y~~~A~~~l~~l~~~la~~e~~  146 (203)
T PF13525_consen   73 -PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYP-----NSEYAEEAKKRLAELRNRLAEHELY  146 (203)
T ss_dssp             -TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-T-----TSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCc-----CchHHHHHHHHHHHHHHHHHHHHHH
Confidence             556667778888888876543           23467777777666542     2222              1223345


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHH
Q 010063          421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE  477 (519)
Q Consensus       421 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  477 (519)
                      +|..|.+.|.+..|+..++.+++.+     |+.+....++..++..|..+|..+.|.
T Consensus       147 ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  147 IARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            6899999999999999999999854     666777888999999999999988554

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.07  E-value=2.1e-08  Score=83.97  Aligned_cols=165  Identities=21%  Similarity=0.166  Sum_probs=131.1

Q ss_pred             ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (519)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (519)
                      .|....+ .+++..+...|+-+.+..+..++..        .++........+|......|++.+|+..++++...    
T Consensus        63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~--------~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l----  129 (257)
T COG5010          63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAI--------AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL----  129 (257)
T ss_pred             CcchHHH-HHHHHHHHhcccccchHHHHhhhhc--------cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc----
Confidence            4444555 8888999999999999888887654        34444445556899999999999999999999876    


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 010063          363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  442 (519)
Q Consensus       363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (519)
                         .|++   +..++.+|.+|.+.|++++|...|.+++++.        +....+..|+|..|.-.|+++.|..++..+.
T Consensus       130 ---~p~d---~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~  195 (257)
T COG5010         130 ---APTD---WEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAY  195 (257)
T ss_pred             ---CCCC---hhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence               3333   4567889999999999999999999999875        2334578899999999999999999999887


Q ss_pred             HHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHH
Q 010063          443 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE  482 (519)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  482 (519)
                      .        ..+....+..+++.+...+|++++|.+.-.+
T Consensus       196 l--------~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         196 L--------SPAADSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             h--------CCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence            6        2233445678999999999999999876544

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.07  E-value=1.1e-06  Score=84.77  Aligned_cols=265  Identities=14%  Similarity=0.087  Sum_probs=157.4

Q ss_pred             ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHH----hhhhhcCCCchHH---------HHHHHHHHHHHHccccHHHHHH
Q 010063          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMS----GIVDSLKDDEPLL---------DAILLHMGSMYSTLENYEKSML  224 (519)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~  224 (519)
                      ......++++.+.-+...+|.+.|+++|+++-    ++.+-+.++.+.+         ...|...|......|+.+.|+.
T Consensus       854 RiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~  933 (1416)
T KOG3617|consen  854 RIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALS  933 (1416)
T ss_pred             ceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHH
Confidence            44455678899999999999999999998743    2222222332221         1346678888999999999999


Q ss_pred             HHHHHHHHHHHh-----cCCCC--------HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 010063          225 VYQRVINVLESR-----YGKTS--------ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLF  291 (519)
Q Consensus       225 ~~~~al~~~~~~-----~~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  291 (519)
                      +|..|-+.+...     .|..+        .....+.+.+|..|...|++.+|+..|.+|......+.--...+.-.-+.
T Consensus       934 ~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen  934 FYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred             HHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            999887654221     11110        11234567899999999999999999988765432221101111122223


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH-----HHHHHHHhhccCC
Q 010063          292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYK-----KALRVIKDSNYMS  366 (519)
Q Consensus       292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-----~al~~~~~~~~~~  366 (519)
                      +++.. ....+.-.|..||++.--.               ...-..+|.+.|.+.+|+++.-     .++++..+....+
T Consensus      1014 nlal~-s~~~d~v~aArYyEe~g~~---------------~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~ 1077 (1416)
T KOG3617|consen 1014 NLALM-SGGSDLVSAARYYEELGGY---------------AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG 1077 (1416)
T ss_pred             HHHhh-cCchhHHHHHHHHHHcchh---------------hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC
Confidence            33321 1222344455555543110               0111245666677777766543     2445544432223


Q ss_pred             CCchHHHHHHHHHHHHHHHcCChHHHHHHHH------HHHHHHHHh-----------hCC------CChhHHHHHHHHHH
Q 010063          367 LDDSIMENMRIDLAELLHIVGRGQEGRELLE------ECLLITEKY-----------KGK------EHPSFVTHLLNLAA  423 (519)
Q Consensus       367 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~------~al~~~~~~-----------~~~------~~~~~~~~~~~la~  423 (519)
                      .|+.    .+..-+..+....+|++|..++-      .|+.++...           ..+      +.......+..+|.
T Consensus      1078 sDp~----ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae 1153 (1416)
T KOG3617|consen 1078 SDPK----LLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAE 1153 (1416)
T ss_pred             CCHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHH
Confidence            3332    33566888888889999887754      444443221           011      11233467888999


Q ss_pred             HHHhccCHHHHHHHHHHHH
Q 010063          424 SYSRSKNFVEAERLLRICL  442 (519)
Q Consensus       424 ~~~~~g~~~~A~~~~~~al  442 (519)
                      ++.++|.|..|-+-|.+|=
T Consensus      1154 ~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1154 LCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred             HHHhccchHHHHHHHhhhh
Confidence            9999999999988887763

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.06  E-value=1.2e-08  Score=84.45  Aligned_cols=124  Identities=10%  Similarity=0.034  Sum_probs=93.8

Q ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010063          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  405 (519)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  405 (519)
                      ...+..+..+|.++...|++++|+..+++++.+.       +++.....++.++|.++...|++++|+..+++++.+...
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-------~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~  104 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-------IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF  104 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-------ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            3456788999999999999999999999999872       334444568899999999999999999999999986321


Q ss_pred             hhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchh
Q 010063          406 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS  457 (519)
Q Consensus       406 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  457 (519)
                      .. ........++..+|..+...|++++|...+.+++..+++..+.+++...
T Consensus       105 ~~-~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~  155 (168)
T CHL00033        105 LP-QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI  155 (168)
T ss_pred             cH-HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence            10 1112223334444444449999999999999999999988777764443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.06  E-value=2.6e-07  Score=80.59  Aligned_cols=188  Identities=13%  Similarity=0.091  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (519)
                      ....+..|..+...|++++|+..|++++...     +..+....+...+|.++...+++++|+..+++.++..     |+
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P~  101 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PT  101 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----cC
Confidence            4456678899999999999999999998863     3456666778999999999999999999999999874     57


Q ss_pred             ChhHHHHHHHHHHHHHHCC---------------C---HHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHc
Q 010063          325 DGRVGMAMCSLAHAKCANG---------------N---AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV  386 (519)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  386 (519)
                      +|....++..+|.++...+               +   ..+|+..+++.++.+       |+.....             
T Consensus       102 ~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-------P~S~ya~-------------  161 (243)
T PRK10866        102 HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-------PNSQYTT-------------  161 (243)
T ss_pred             CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-------cCChhHH-------------
Confidence            7888889999998764443               2   234556666665553       3333322             


Q ss_pred             CChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHH
Q 010063          387 GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT  466 (519)
Q Consensus       387 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  466 (519)
                          +|...+......           .+.--..+|..|.+.|.|..|+.-++.+++-+     |+.+...+++..+...
T Consensus       162 ----~A~~rl~~l~~~-----------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~a  221 (243)
T PRK10866        162 ----DATKRLVFLKDR-----------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENA  221 (243)
T ss_pred             ----HHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHH
Confidence                222222222111           12233467888999999999999999988854     5667788889999999


Q ss_pred             HHhcCChHHHHHHHHH
Q 010063          467 LYHLNRDKEAEKLVLE  482 (519)
Q Consensus       467 ~~~~g~~~~A~~~~~~  482 (519)
                      |...|..++|......
T Consensus       222 y~~lg~~~~a~~~~~~  237 (243)
T PRK10866        222 YRQLQLNAQADKVAKI  237 (243)
T ss_pred             HHHcCChHHHHHHHHH
Confidence            9999999998876643

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=99.04  E-value=3.6e-05  Score=77.54  Aligned_cols=351  Identities=11%  Similarity=0.033  Sum_probs=226.9

Q ss_pred             CCCChHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Q 010063          155 GNKGIEEVAILDIIALGYV-YIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL  233 (519)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  233 (519)
                      ...+...+.+...+|.++. ...+++.|+.+++++..+.++ ..-......+...++.++.+.+... |....++.++..
T Consensus        52 ~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~  129 (608)
T PF10345_consen   52 KLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDS  129 (608)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH
Confidence            3445566788899999987 689999999999999888865 3323334455667788998888777 999999999987


Q ss_pred             HHhcCCCCHHHHHHHHHH-HHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010063          234 ESRYGKTSILLVTSLLGM-AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR  312 (519)
Q Consensus       234 ~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  312 (519)
                      +..   .+.........+ ...+...+++..|.+.++..........  +......+....+.+....+..+++++..++
T Consensus       130 ~~~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~--d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~  204 (608)
T PF10345_consen  130 ETY---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRG--DPAVFVLASLSEALLHLRRGSPDDVLELLQR  204 (608)
T ss_pred             hcc---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcC--CHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Confidence            652   222222333333 3333334899999999999998876432  2233344445556777788889999999999


Q ss_pred             HHHHHHHh--cCCCChhHHHHHHHHHH--HHHHCCCHHHHHHHHHHHHHHHHhhccCC------CC--------------
Q 010063          313 ILKIYTKV--YGENDGRVGMAMCSLAH--AKCANGNAEEAVELYKKALRVIKDSNYMS------LD--------------  368 (519)
Q Consensus       313 al~~~~~~--~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~--------------  368 (519)
                      +.......  .+..++....++..+-.  ++...|+++.+...+++.-....+.....      ++              
T Consensus       205 ~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~  284 (608)
T PF10345_consen  205 AIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNS  284 (608)
T ss_pred             HHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccC
Confidence            98776654  11123334445554444  44567888888877776655554431111      00              


Q ss_pred             ------------chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC---CCCh---------------hHHHHH
Q 010063          369 ------------DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG---KEHP---------------SFVTHL  418 (519)
Q Consensus       369 ------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~---------------~~~~~~  418 (519)
                                  .....-++.--|......|..++|.+++++++...++...   ...+               -...+.
T Consensus       285 ~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~  364 (608)
T PF10345_consen  285 GGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLL  364 (608)
T ss_pred             CCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHH
Confidence                        0111222333355566677778999999999999887751   1100               012234


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCC-CCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCc
Q 010063          419 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGP-DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP  497 (519)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  497 (519)
                      ..++.+..-.|++.+|....+.+.....+...+ ........++..|..+...|+.+.|..+|.+..-......++..+.
T Consensus       365 ~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~  444 (608)
T PF10345_consen  365 FYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKF  444 (608)
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcc
Confidence            456777788999999999999888866543221 1123355667788888999999999999997765554455555554


Q ss_pred             chhh-HHHHHHHHHHH
Q 010063          498 VGKL-FCFVLFGLVWF  512 (519)
Q Consensus       498 ~~~~-~~~~~l~~~~~  512 (519)
                      .+.. -+..|+..++.
T Consensus       445 ~El~ila~LNl~~I~~  460 (608)
T PF10345_consen  445 RELYILAALNLAIILQ  460 (608)
T ss_pred             hHHHHHHHHHHHHHhH
Confidence            4332 33335555544

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.03  E-value=1.5e-05  Score=72.71  Aligned_cols=341  Identities=16%  Similarity=0.094  Sum_probs=219.5

Q ss_pred             HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHH----HHHHHHHH-HHhcCChHHHHHHHHHHHhhhhhc-----
Q 010063          126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVA----ILDIIALG-YVYIGDLKFVQSLLDMMSGIVDSL-----  195 (519)
Q Consensus       126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~----~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~-----  195 (519)
                      ..+....+..+.....+.+-+++..    ...++..-+    .+..+-.+ |...|+...+...+++........     
T Consensus       175 ~ll~me~d~~dV~~ll~~~~qi~~n----~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~  250 (629)
T KOG2300|consen  175 MLLIMERDDYDVEKLLQRCGQIWQN----ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSR  250 (629)
T ss_pred             HHHHhCccHHHHHHHHHHHHHHHhc----cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCC
Confidence            3334444555555555555544433    222332222    23334444 456788888777777655433322     


Q ss_pred             -------CCCchHHHH--------HHHHH--HHHHHccccHHHHHHHHHHHHHHHHHhcCCC--CH----HHHHHHHHHH
Q 010063          196 -------KDDEPLLDA--------ILLHM--GSMYSTLENYEKSMLVYQRVINVLESRYGKT--SI----LLVTSLLGMA  252 (519)
Q Consensus       196 -------~~~~~~~~~--------~~~~l--~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~----~~~~~~~~la  252 (519)
                             +.+.+....        ++..+  -.--...|-+++|.++-++++...++....+  .+    .....+..+.
T Consensus       251 ~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv  330 (629)
T KOG2300|consen  251 GHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIV  330 (629)
T ss_pred             CccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHH
Confidence                   222222211        11111  1112346888999999999988876654333  11    2234566777


Q ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 010063          253 KVLGSIGRAKKAVEIYHRVITILELNRGT--ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  330 (519)
Q Consensus       253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  330 (519)
                      .+-.-.|++.+|++-...+.+...+..++  -....+.....+|......|.++.|+..|..+.+...+.     .-.+.
T Consensus       331 ~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~  405 (629)
T KOG2300|consen  331 MCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAF  405 (629)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHH
Confidence            88888999999999999999888775432  122345566778888888999999999999999875432     23556


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc-cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 010063          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSN-YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  409 (519)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  409 (519)
                      +..++|.+|...|+-+.--+    +++...... .........+.+++..|-....++++.||...+.+.+++....  +
T Consensus       406 ~nlnlAi~YL~~~~~ed~y~----~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae--d  479 (629)
T KOG2300|consen  406 CNLNLAISYLRIGDAEDLYK----ALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE--D  479 (629)
T ss_pred             HHHhHHHHHHHhccHHHHHH----HHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh--h
Confidence            77889999999887654333    333321100 0000112334556667778889999999999999999987322  1


Q ss_pred             CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCC--hHHHHHHHHHH
Q 010063          410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR--DKEAEKLVLEA  483 (519)
Q Consensus       410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a  483 (519)
                      ...-.+-.+..|+.+....|+..++.+..+-++.+.+++  ++++.......-+-.+|...|+  .+...+.+..-
T Consensus       480 ~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~~  553 (629)
T KOG2300|consen  480 LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQLWSSSILTDLYQALGEKGNEMENEAFRKH  553 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence            233445567788999999999999999999999999887  6777777777777888888888  66666666553

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.03  E-value=5.1e-06  Score=75.49  Aligned_cols=269  Identities=13%  Similarity=0.126  Sum_probs=159.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH--------
Q 010063          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL--------  233 (519)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------  233 (519)
                      ...+...+..-...|+..-|...|+.+.+..   ++ +......+...+..-..+..++.|.-.|.-|++..        
T Consensus       207 v~~wikyarFE~k~g~~~~aR~VyerAie~~---~~-d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL  282 (677)
T KOG1915|consen  207 VSNWIKYARFEEKHGNVALARSVYERAIEFL---GD-DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEEL  282 (677)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh---hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Confidence            4556667777788899999999999988776   22 33334445556666666777777777777666542        


Q ss_pred             -------HHhcCC---------------------CCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC-Ch
Q 010063          234 -------ESRYGK---------------------TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE-SA  284 (519)
Q Consensus       234 -------~~~~~~---------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~  284 (519)
                             ++.+|.                     ++|...+++...-.+-...|+.+.-.+.|++|+.-..-..... ..
T Consensus       283 ~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~  362 (677)
T KOG1915|consen  283 YKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWR  362 (677)
T ss_pred             HHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHH
Confidence                   111111                     2233345666666677777999999999999986421100000 00


Q ss_pred             hhHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010063          285 DLVLPLFSLG-SLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (519)
Q Consensus       285 ~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (519)
                      .....+.+.+ ..-....+.+.+.+.|+.++++..    ..+-..+..+...|....++.+...|...+-.|+..+.+.+
T Consensus       363 RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIP----HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K  438 (677)
T KOG1915|consen  363 RYIYLWINYALYEELEAEDVERTRQVYQACLDLIP----HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK  438 (677)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC----cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh
Confidence            1111222222 112356889999999999998642    12233455555555555555555555555444443221100


Q ss_pred             c-----------------------CCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHH
Q 010063          364 Y-----------------------MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN  420 (519)
Q Consensus       364 ~-----------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  420 (519)
                      .                       .-.-.|....++...|.+-..+|+.+.|...|+-|+.--  .  -+.|..  .+..
T Consensus       439 lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp--~--ldmpel--lwka  512 (677)
T KOG1915|consen  439 LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP--A--LDMPEL--LWKA  512 (677)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc--c--cccHHH--HHHH
Confidence            0                       001123335567788888888999999999888776521  0  122332  2334


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHH
Q 010063          421 LAASYSRSKNFVEAERLLRICLDI  444 (519)
Q Consensus       421 la~~~~~~g~~~~A~~~~~~al~~  444 (519)
                      ....-...|.+++|..+|++.++.
T Consensus       513 YIdFEi~~~E~ekaR~LYerlL~r  536 (677)
T KOG1915|consen  513 YIDFEIEEGEFEKARALYERLLDR  536 (677)
T ss_pred             hhhhhhhcchHHHHHHHHHHHHHh
Confidence            455567889999999999999883

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.03  E-value=6.3e-08  Score=77.68  Aligned_cols=123  Identities=22%  Similarity=0.215  Sum_probs=99.7

Q ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 010063          299 KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID  378 (519)
Q Consensus       299 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  378 (519)
                      ..++...+...+++.+.-     .++.+....+...+|.++...|++++|...|++++..       .+++.....+...
T Consensus        23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-------~~d~~l~~~a~l~   90 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-------APDPELKPLARLR   90 (145)
T ss_pred             HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-------CCCHHHHHHHHHH
Confidence            578888887777777663     2344455678888999999999999999999999885       3556666677889


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 010063          379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  442 (519)
Q Consensus       379 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (519)
                      +|.++...|++++|+..++..         ...+........+|.+|...|++++|...|++++
T Consensus        91 LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            999999999999999998652         2344455677889999999999999999999874

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.03  E-value=8.2e-09  Score=80.47  Aligned_cols=102  Identities=9%  Similarity=0.092  Sum_probs=92.4

Q ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (519)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (519)
                      ++.....+.+|..+...|++++|...|+-...+        +|.....+++||.++..+|++.+|+..|.+++.+     
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-----   98 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-----   98 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence            555666899999999999999999999987765        4666889999999999999999999999999987     


Q ss_pred             CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (519)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (519)
                         .|+.+..+.++|.++...|+.+.|.+.|+.++..+
T Consensus        99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363         99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence               46678899999999999999999999999999987

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.02  E-value=6.6e-07  Score=84.07  Aligned_cols=243  Identities=14%  Similarity=0.143  Sum_probs=167.9

Q ss_pred             HHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHH
Q 010063          129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH  208 (519)
Q Consensus       129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (519)
                      +..|+..+-+..|.+|+..+...    .........+..+|..|...|+.+.|..+|+++...-   -..-.+++.+|..
T Consensus       358 l~e~~~~~~i~tyteAv~~vdP~----ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~---y~~v~dLa~vw~~  430 (835)
T KOG2047|consen  358 LYEGNAAEQINTYTEAVKTVDPK----KAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP---YKTVEDLAEVWCA  430 (835)
T ss_pred             hhcCChHHHHHHHHHHHHccCcc----cCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC---ccchHHHHHHHHH
Confidence            34577888888888887764221    1122335578899999999999999999999988764   2233567888999


Q ss_pred             HHHHHHccccHHHHHHHHHHHHHHHHH----hcCCCCHH------HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010063          209 MGSMYSTLENYEKSMLVYQRVINVLES----RYGKTSIL------LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (519)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (519)
                      .|..-....+++.|+.+.++|...-..    .+....|.      ....+...+......|-++.....|++.+++.   
T Consensus       431 waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr---  507 (835)
T KOG2047|consen  431 WAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR---  507 (835)
T ss_pred             HHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh---
Confidence            999999999999999999998754221    12222332      23445556677777788888888888888773   


Q ss_pred             cCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH---HHHHHHHHCCCHHHHHHHHHHH
Q 010063          279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMC---SLAHAKCANGNAEEAVELYKKA  355 (519)
Q Consensus       279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~---~la~~~~~~g~~~~A~~~~~~a  355 (519)
                           ..+.....|.|..+....-+++|.+.|++.+.++      ..|.....|+   .....-+...+.+.|..+|++|
T Consensus       508 -----iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF------k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa  576 (835)
T KOG2047|consen  508 -----IATPQIIINYAMFLEEHKYFEESFKAYERGISLF------KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA  576 (835)
T ss_pred             -----cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC------CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence                 2234566778888888888999999999988876      2344433333   3333333445789999999999


Q ss_pred             HHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010063          356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL  400 (519)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  400 (519)
                      ++.+      +  +...-.++...|..-..-|-...|+..|++|-
T Consensus       577 L~~C------p--p~~aKtiyLlYA~lEEe~GLar~amsiyerat  613 (835)
T KOG2047|consen  577 LDGC------P--PEHAKTIYLLYAKLEEEHGLARHAMSIYERAT  613 (835)
T ss_pred             HhcC------C--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            9853      1  22223344555666666677777777777653

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.02  E-value=1.3e-07  Score=80.37  Aligned_cols=224  Identities=17%  Similarity=0.097  Sum_probs=161.5

Q ss_pred             HhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010063          173 VYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA  252 (519)
Q Consensus       173 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  252 (519)
                      ....+|.+|++++..-.+       ..|.....+..+|.||+...+|..|-.+|++.-..        .|.........+
T Consensus        21 I~d~ry~DaI~~l~s~~E-------r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~A   85 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELE-------RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQA   85 (459)
T ss_pred             HHHhhHHHHHHHHHHHHh-------cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHH
Confidence            456677788777765433       33544556889999999999999999999987554        466666667778


Q ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 010063          253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM  332 (519)
Q Consensus       253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  332 (519)
                      ..++..+.+..|+.......+        +......++..-+.+.+..+++..+..+.++.-          ....+...
T Consensus        86 QSLY~A~i~ADALrV~~~~~D--------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp----------~en~Ad~~  147 (459)
T KOG4340|consen   86 QSLYKACIYADALRVAFLLLD--------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP----------SENEADGQ  147 (459)
T ss_pred             HHHHHhcccHHHHHHHHHhcC--------CHHHHHHHHHHHHHHhcccccCcchHHHHHhcc----------CCCccchh
Confidence            999999999999887765532        122233444555666777788887777665431          12456678


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC---
Q 010063          333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK---  409 (519)
Q Consensus       333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---  409 (519)
                      ++.|.+.++.|++++|.+-|+.+++.       +.-.+.++   ++++.++.+.|+++.|+++..+.++...+..++   
T Consensus       148 in~gCllykegqyEaAvqkFqaAlqv-------sGyqpllA---YniALaHy~~~qyasALk~iSEIieRG~r~HPElgI  217 (459)
T KOG4340|consen  148 INLGCLLYKEGQYEAAVQKFQAALQV-------SGYQPLLA---YNLALAHYSSRQYASALKHISEIIERGIRQHPELGI  217 (459)
T ss_pred             ccchheeeccccHHHHHHHHHHHHhh-------cCCCchhH---HHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence            89999999999999999999999987       34444443   789999999999999999998887764332110   


Q ss_pred             -------C-----C------hhHHHHHHHHHHHHHhccCHHHHHHHHH
Q 010063          410 -------E-----H------PSFVTHLLNLAASYSRSKNFVEAERLLR  439 (519)
Q Consensus       410 -------~-----~------~~~~~~~~~la~~~~~~g~~~~A~~~~~  439 (519)
                             +     +      .....+++..+.++.+.|+++.|.+.+.
T Consensus       218 Gm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  218 GMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             cceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence                   0     0      1223455666778899999998877654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.02  E-value=5.9e-09  Score=88.88  Aligned_cols=101  Identities=17%  Similarity=0.205  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhh
Q 010063          115 ERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS  194 (519)
Q Consensus       115 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  194 (519)
                      ....+.+-..+..+.+.++|.+|+..|.+||++          .|..+..|.+.+.+|.++|.++.|++-.+.++.+.  
T Consensus        78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l----------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--  145 (304)
T KOG0553|consen   78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL----------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--  145 (304)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc----------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--
Confidence            345566888999999999999999999999999          88999999999999999999999999999999876  


Q ss_pred             cCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063          195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (519)
Q Consensus       195 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (519)
                           |....+|..||.+|..+|++.+|++.|++++++
T Consensus       146 -----p~yskay~RLG~A~~~~gk~~~A~~aykKaLel  178 (304)
T KOG0553|consen  146 -----PHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL  178 (304)
T ss_pred             -----hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence                 888899999999999999999999999999987

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.02  E-value=1.6e-08  Score=78.88  Aligned_cols=103  Identities=17%  Similarity=0.088  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (519)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (519)
                      +......+.+|..+...|++++|...|+-...+        +|.....+++||.++..+|++++|+..|.+++.+     
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-----   98 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-----   98 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence            566778889999999999999999999998877        6778899999999999999999999999999985     


Q ss_pred             CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (519)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (519)
                         +|+.+..+.++|.++...|+.+.|.+.|+.++....
T Consensus        99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363         99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence               456667889999999999999999999999999863

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.01  E-value=6.6e-08  Score=77.57  Aligned_cols=135  Identities=11%  Similarity=0.092  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (519)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (519)
                      ....+..+......++...+...++..+..       .++.+....+...+|.+++..|++++|...|+.++...    +
T Consensus        11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~----~   79 (145)
T PF09976_consen   11 ASALYEQALQALQAGDPAKAEAAAEQLAKD-------YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA----P   79 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----C
Confidence            344666666667899999988877777665       55566677888999999999999999999999988743    3


Q ss_pred             CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010063          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI  272 (519)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  272 (519)
                      +......+...++.++...|++++|+..++..         ++.+........+|.++...|++++|+..|++++
T Consensus        80 d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   80 DPELKPLARLRLARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            44445566889999999999999999998652         1234456677889999999999999999999874

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.01  E-value=7.4e-07  Score=74.16  Aligned_cols=193  Identities=19%  Similarity=0.099  Sum_probs=144.7

Q ss_pred             ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 010063          217 ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSL  296 (519)
Q Consensus       217 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  296 (519)
                      .+.++-+++....+......  .-.++....+-.+..+....|+.+-|..++++....+        |....+...-|..
T Consensus        26 rnseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--------p~S~RV~~lkam~   95 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--------PGSKRVGKLKAML   95 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--------CCChhHHHHHHHH
Confidence            45556666666655544432  1223445667777888888999999999988876542        3344556667888


Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHH
Q 010063          297 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR  376 (519)
Q Consensus       297 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  376 (519)
                      +...|++++|+++|+..++        ++|....++-..--+...+|+.-+|++.+.+-++.+..      |    ..+|
T Consensus        96 lEa~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~------D----~EAW  157 (289)
T KOG3060|consen   96 LEATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN------D----QEAW  157 (289)
T ss_pred             HHHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC------c----HHHH
Confidence            9999999999999999887        55665556666666777889999999999998888532      2    3567


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHH
Q 010063          377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK---NFVEAERLLRICLDIM  445 (519)
Q Consensus       377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~  445 (519)
                      ..++.+|...|+|++|.-++++.+-+        .|........+|.++.-+|   +..-|.++|.+++++.
T Consensus       158 ~eLaeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  158 HELAEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            88999999999999999999998763        4555566677788777665   5678999999999963

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.01  E-value=2.3e-08  Score=79.52  Aligned_cols=102  Identities=14%  Similarity=0.101  Sum_probs=90.3

Q ss_pred             CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (519)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (519)
                      +|........+|..+...|++++|...+++++..        .|.....+..+|.++...|++++|..++++++.+    
T Consensus        13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----   80 (135)
T TIGR02552        13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL----   80 (135)
T ss_pred             ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence            3445677889999999999999999999999876        4556788999999999999999999999999884    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                          +|.....+..+|.++...|++++|+..++++++.
T Consensus        81 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        81 ----DPDDPRPYFHAAECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             ----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                4566678899999999999999999999999987

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.00  E-value=1.6e-08  Score=80.39  Aligned_cols=102  Identities=16%  Similarity=0.194  Sum_probs=88.9

Q ss_pred             ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (519)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (519)
                      +|........+|..+...|++++|...++++....       |....++..+|.++...|++++|..++++++...    
T Consensus        13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----   81 (135)
T TIGR02552        13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-------PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD----   81 (135)
T ss_pred             ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence            77778889999999999999999999999987754       3345568899999999999999999999988752    


Q ss_pred             CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010063          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (519)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (519)
                          |.....+..+|.++...|++++|+..++++++.
T Consensus        82 ----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        82 ----PDDPRPYFHAAECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             ----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                334677889999999999999999999999987

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.97  E-value=1.5e-08  Score=90.54  Aligned_cols=263  Identities=18%  Similarity=0.156  Sum_probs=162.8

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHH
Q 010063          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD  203 (519)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  203 (519)
                      .++..+-.|+|..++.-++  +.        .............+.++++.+|+++..+.-...         ..+|...
T Consensus         7 ~vrn~fy~G~Y~~~i~e~~--~~--------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---------~~~~~l~   67 (290)
T PF04733_consen    7 TVRNQFYLGNYQQCINEAS--LK--------SFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---------SSSPELQ   67 (290)
T ss_dssp             HHHHHHCTT-HHHHCHHHH--CH--------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---------TSSCCCH
T ss_pred             HHHHHHHhhhHHHHHHHhh--cc--------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---------CCChhHH
Confidence            3456677899999997665  11        233556677778889999999998766533321         1223322


Q ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (519)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (519)
                       +...++..+...++-+.++.-+++.       ...... .........|.++...|++++|++.+.+.           
T Consensus        68 -av~~la~y~~~~~~~e~~l~~l~~~-------~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----------  128 (290)
T PF04733_consen   68 -AVRLLAEYLSSPSDKESALEELKEL-------LADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----------  128 (290)
T ss_dssp             -HHHHHHHHHCTSTTHHCHHHHHHHC-------CCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----------
T ss_pred             -HHHHHHHHHhCccchHHHHHHHHHH-------HHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----------
Confidence             2455566555444444444333222       111111 12234556688899999999998887653           


Q ss_pred             ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHH
Q 010063          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG--NAEEAVELYKKALRVIK  360 (519)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~  360 (519)
                        ....+......++..+++++.|.+.++.+.++        +.+...+....+++....|  ++.+|...|++..+.+ 
T Consensus       129 --~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--------~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~-  197 (290)
T PF04733_consen  129 --GSLELLALAVQILLKMNRPDLAEKELKNMQQI--------DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF-  197 (290)
T ss_dssp             --TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--------SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-
T ss_pred             --CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc-
Confidence              12345556778899999999999988776542        2222223333344444444  6899999999854321 


Q ss_pred             hhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCH-HHHHHHHH
Q 010063          361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF-VEAERLLR  439 (519)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~  439 (519)
                           ++    ...+++.++.++..+|++++|.+.+++++.        ..|....++.+++.+....|+. +.+.+++.
T Consensus       198 -----~~----t~~~lng~A~~~l~~~~~~eAe~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~  260 (290)
T PF04733_consen  198 -----GS----TPKLLNGLAVCHLQLGHYEEAEELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLS  260 (290)
T ss_dssp             -----------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred             -----CC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence                 11    234568899999999999999999999865        3455667889999999999998 55666666


Q ss_pred             HHHHHHHHhcCCCCcchh
Q 010063          440 ICLDIMTKTVGPDDQSIS  457 (519)
Q Consensus       440 ~al~~~~~~~~~~~~~~~  457 (519)
                      +....     .|+||...
T Consensus       261 qL~~~-----~p~h~~~~  273 (290)
T PF04733_consen  261 QLKQS-----NPNHPLVK  273 (290)
T ss_dssp             HCHHH-----TTTSHHHH
T ss_pred             HHHHh-----CCCChHHH
Confidence            65442     35665443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.97  E-value=4.3e-08  Score=87.58  Aligned_cols=260  Identities=16%  Similarity=0.120  Sum_probs=159.0

Q ss_pred             HHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010063          171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG  250 (519)
Q Consensus       171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  250 (519)
                      -++..|+|..++.-.+ ..      ..+.+........+.+++..+|+++..+.-...          ..+|. ..+...
T Consensus        10 n~fy~G~Y~~~i~e~~-~~------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~----------~~~~~-l~av~~   71 (290)
T PF04733_consen   10 NQFYLGNYQQCINEAS-LK------SFSPENKLERDFYQYRSYIALGQYDSVLSEIKK----------SSSPE-LQAVRL   71 (290)
T ss_dssp             HHHCTT-HHHHCHHHH-CH------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T----------TSSCC-CHHHHH
T ss_pred             HHHHhhhHHHHHHHhh-cc------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc----------CCChh-HHHHHH
Confidence            3567899999886555 11      122234445567788899999988765543321          12222 334455


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 010063          251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  330 (519)
Q Consensus       251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  330 (519)
                      ++..+...++-+.++.-++..+.      +.............|.++...|++++|++.+.+.             ....
T Consensus        72 la~y~~~~~~~e~~l~~l~~~~~------~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------------~~lE  132 (290)
T PF04733_consen   72 LAEYLSSPSDKESALEELKELLA------DQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------------GSLE  132 (290)
T ss_dssp             HHHHHCTSTTHHCHHHHHHHCCC------TS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------------TCHH
T ss_pred             HHHHHhCccchHHHHHHHHHHHH------hccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------------Cccc
Confidence            66666554554444443332211      1112122345556678888899999999887653             1123


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHhhC
Q 010063          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG--RGQEGRELLEECLLITEKYKG  408 (519)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~  408 (519)
                      .......++...++++.|.+.++.+.+.       .. +..+..  ...+.+....|  ++.+|...|++..+       
T Consensus       133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~-------~e-D~~l~q--La~awv~l~~g~e~~~~A~y~f~El~~-------  195 (290)
T PF04733_consen  133 LLALAVQILLKMNRPDLAEKELKNMQQI-------DE-DSILTQ--LAEAWVNLATGGEKYQDAFYIFEELSD-------  195 (290)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHCC-------SC-CHHHHH--HHHHHHHHHHTTTCCCHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CC-cHHHHH--HHHHHHHHHhCchhHHHHHHHHHHHHh-------
Confidence            4455678899999999999888775443       22 322211  22333444444  68999999998533       


Q ss_pred             CCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHH
Q 010063          409 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD-KEAEKLVLEALYIR  487 (519)
Q Consensus       409 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~~~  487 (519)
                       ..+.....++.+|.++..+|++++|.+.+++++.        .+|....++.+++.+....|+. +.+.+++.+.... 
T Consensus       196 -~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~-  265 (290)
T PF04733_consen  196 -KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS-  265 (290)
T ss_dssp             -CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH-
T ss_pred             -ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh-
Confidence             2234456788999999999999999999999875        3456667889999999999998 5566666665443 


Q ss_pred             HHhcCCCCCcc
Q 010063          488 EIAFGKDSLPV  498 (519)
Q Consensus       488 ~~~~~~~~~~~  498 (519)
                          .|+||.+
T Consensus       266 ----~p~h~~~  272 (290)
T PF04733_consen  266 ----NPNHPLV  272 (290)
T ss_dssp             ----TTTSHHH
T ss_pred             ----CCCChHH
Confidence                3667655

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.97  E-value=2.4e-06  Score=71.20  Aligned_cols=197  Identities=15%  Similarity=0.174  Sum_probs=149.7

Q ss_pred             HHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHH
Q 010063          129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH  208 (519)
Q Consensus       129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (519)
                      ....+.++.+++..+.+.-....    ...++.-.++-.+..+....|+.+-|..++++....+       |...++...
T Consensus        23 ~~~rnseevv~l~~~~~~~~k~~----~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-------p~S~RV~~l   91 (289)
T KOG3060|consen   23 ETVRNSEEVVQLGSEVLNYSKSG----ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-------PGSKRVGKL   91 (289)
T ss_pred             ccccCHHHHHHHHHHHHHHhhhc----ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-------CCChhHHHH
Confidence            34456778888888777665442    2366667777788888889999999999998876655       222233455


Q ss_pred             HHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 010063          209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL  288 (519)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  288 (519)
                      -|..+...|++++|+++|+..++        ++|....++..--.+...+|+.-+|++.+..-++.+        +....
T Consensus        92 kam~lEa~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~E  155 (289)
T KOG3060|consen   92 KAMLLEATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQE  155 (289)
T ss_pred             HHHHHHHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHH
Confidence            67788889999999999998765        335444455555666778899999999998888874        44578


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHH
Q 010063          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG---NAEEAVELYKKALRVIK  360 (519)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~  360 (519)
                      +|..++.+|...|+|++|.-++++.+-+        .|.....+..+|.+++-+|   ++.-|.++|.+++++..
T Consensus       156 AW~eLaeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  156 AWHELAEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             HHHHHHHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            9999999999999999999999999874        4555566777888777765   56779999999999843

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.94  E-value=6.3e-08  Score=80.32  Aligned_cols=114  Identities=18%  Similarity=0.247  Sum_probs=88.3

Q ss_pred             CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010063          324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (519)
Q Consensus       324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (519)
                      ..+..+..+.++|..+...|++++|+.++++++....       +++.....+.++|.++...|++++|+..+++++.+ 
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-  101 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-------DPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-  101 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence            3456777899999999999999999999999998732       23333567899999999999999999999999985 


Q ss_pred             HHhhCCCChhHHHHHHHHHHHHHhcc-------CHHHHHHHHHHHHHHHHHhcCCC
Q 010063          404 EKYKGKEHPSFVTHLLNLAASYSRSK-------NFVEAERLLRICLDIMTKTVGPD  452 (519)
Q Consensus       404 ~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~~  452 (519)
                             .|.....+..+|.++...|       ++++|...++++++..++....+
T Consensus       102 -------~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~  150 (172)
T PRK02603        102 -------NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA  150 (172)
T ss_pred             -------CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence                   3444566677787777655       46777777777777766655444

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=3.9e-06  Score=69.48  Aligned_cols=225  Identities=10%  Similarity=0.008  Sum_probs=158.4

Q ss_pred             ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (519)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (519)
                      ....+..+..-+.+|....+|++|...+.++.+-.+. .....+.+..+-..+........+.++..++++|..++.+..
T Consensus        27 ~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEn-nrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G  105 (308)
T KOG1585|consen   27 WDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN-NRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG  105 (308)
T ss_pred             chhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence            3344555666778888999999999999998876654 233345566677788888889999999999999999988763


Q ss_pred             CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (519)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (519)
                      .   |+.+..-...+--....-++++|+.+|++++.+.+...  ........+...++++....++++|-..+.+-..+.
T Consensus       106 s---pdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~d--r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~  180 (308)
T KOG1585|consen  106 S---PDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDD--RDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAA  180 (308)
T ss_pred             C---cchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHH
Confidence            3   33333333444455677899999999999999986632  223345667788999999999999999998877776


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010063          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  397 (519)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (519)
                      .+.-  ..+.....+.....+|....+|..|..+++..-++-.      -..+.-..+..+|-..| ..|+.++....+.
T Consensus       181 ~~~~--~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~------f~~sed~r~lenLL~ay-d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  181 DKCD--AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPA------FLKSEDSRSLENLLTAY-DEGDIEEIKKVLS  251 (308)
T ss_pred             HHHh--hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcc------ccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence            6542  2344445566666677778899999999998766521      12233344445555544 4577776655543

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=98.92  E-value=4.4e-08  Score=99.53  Aligned_cols=209  Identities=16%  Similarity=0.120  Sum_probs=189.7

Q ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (519)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (519)
                      ....|......|.+.+|.+ .-+++.+.....+.-++..+..+..++.++...|++++|+.+-.++.-+.++..+.+++.
T Consensus       935 ~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen  935 SPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred             hhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence            4566777778889999999 888888888888888999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 010063          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  365 (519)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  365 (519)
                      ....+.+++......++...|...+.++..+..-.+++++|..+.+..+++.++...++++.|+.+.+.|.....+.  .
T Consensus      1014 t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v--~ 1091 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKV--L 1091 (1236)
T ss_pred             HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh--c
Confidence            99999999999999999999999999999998888899999999999999999999999999999999999976664  5


Q ss_pred             CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 010063          366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH  417 (519)
Q Consensus       366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  417 (519)
                      ++.+......+..+++.+...+++..|....+....++...+|.++.....+
T Consensus      1092 g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S 1143 (1236)
T KOG1839|consen 1092 GPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKES 1143 (1236)
T ss_pred             CccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhh
Confidence            6677777888899999999999999999999999999999999888765543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.92  E-value=1e-07  Score=79.01  Aligned_cols=112  Identities=17%  Similarity=0.274  Sum_probs=88.1

Q ss_pred             CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010063          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (519)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (519)
                      ..+..+..++.+|..+...|++++|+.+|++++....     +.+....++..+|.++...|++++|+.+++++++.   
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---  101 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---  101 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence            3456667799999999999999999999999988642     23344678999999999999999999999999987   


Q ss_pred             hcCCCChhhHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHHHHHhcC
Q 010063          278 NRGTESADLVLPLFSLGSLFIKEGK-------AVDAESVFSRILKIYTKVYG  322 (519)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~  322 (519)
                           .|.....+..+|.++...|+       +++|+..++++++.+++...
T Consensus       102 -----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~  148 (172)
T PRK02603        102 -----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR  148 (172)
T ss_pred             -----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence                 34456777788888877655       66666666777666655543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.92  E-value=6.9e-08  Score=82.53  Aligned_cols=123  Identities=12%  Similarity=0.066  Sum_probs=103.1

Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcC
Q 010063          159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG  238 (519)
Q Consensus       159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  238 (519)
                      ...++.+..-|.-.+..++|.+|+..|.+|+.+.       |..+..|.+.+.+|.+.|.++.|++-.+.++.+      
T Consensus        78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~-------P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------  144 (304)
T KOG0553|consen   78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIELD-------PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI------  144 (304)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-------CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc------
Confidence            3456677888999999999999999999999886       555666889999999999999999999999986      


Q ss_pred             CCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHH
Q 010063          239 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV  304 (519)
Q Consensus       239 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  304 (519)
                        +|....+|..||.+|..+|++++|++.|++++++        .|+......+|..+-...++..
T Consensus       145 --Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  145 --DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             --ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCCC
Confidence              5777999999999999999999999999999998        4555555566665555554444

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.87  E-value=1.2e-07  Score=73.54  Aligned_cols=103  Identities=17%  Similarity=0.240  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  325 (519)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  325 (519)
                      .+++.+|..+...|++++|+..+.+++..     .++++....++..+|.++...|++++|+.++++++...     +++
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence            46788999999999999999999999875     23344556788999999999999999999999998753     344


Q ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      +....++..+|.++...|++++|..+++++++.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            445677899999999999999999999999987

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.87  E-value=6.5e-08  Score=75.03  Aligned_cols=103  Identities=16%  Similarity=0.124  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 010063          330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  409 (519)
Q Consensus       330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  409 (519)
                      .+++.+|..+...|++++|+..+.+++..       .++++....++..+|.++...|++++|+.++++++...     +
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p   70 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-------YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----P   70 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----C
Confidence            36788999999999999999999999876       34444445667889999999999999999999998753     3


Q ss_pred             CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063          410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (519)
Q Consensus       410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (519)
                      +++....++..+|.++...|++++|..++++++..
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            44455678899999999999999999999999885

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.83  E-value=5.9e-07  Score=82.00  Aligned_cols=153  Identities=18%  Similarity=0.123  Sum_probs=123.9

Q ss_pred             hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010063          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (519)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (519)
                      +......+..+..++..|++++|+..++..+.        +.|+....+...+.++...|+.++|.+.+++++..     
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--------~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-----  369 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIA--------AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL-----  369 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----
Confidence            34567788889999999999999999999766        45677777788899999999999999999999987     


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (519)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (519)
                        .|+.+   ....++|..|.+.|++.+|+..++..+.        +.|+....|..||..|..+|+..+|...      
T Consensus       370 --~P~~~---~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~~a~~A------  430 (484)
T COG4783         370 --DPNSP---LLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRAEALLA------  430 (484)
T ss_pred             --CCCcc---HHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchHHHHHH------
Confidence              33333   3457899999999999999999888765        5677778899999999999988776543      


Q ss_pred             HHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                                         .+..|+..|++++|+..+..+.+..
T Consensus       431 -------------------~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         431 -------------------RAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             -------------------HHHHHHhCCCHHHHHHHHHHHHHhc
Confidence                               3455667889999999988887654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.79  E-value=2.1e-07  Score=70.30  Aligned_cols=101  Identities=31%  Similarity=0.264  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 010063          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  410 (519)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  410 (519)
                      +.+.+|.++-..|+.++|+.+|++++..       +.+.+....++..+|..+...|++++|+..+++++...     ++
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-------gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~   70 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAA-------GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PD   70 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence            5667888888888888888888888774       44455556677888888888888888888888876532     22


Q ss_pred             ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063          411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (519)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (519)
                      .+........++.++...|++++|+..+-.++.
T Consensus        71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   71 DELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            222444555677788888888888888776665

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.77  E-value=1.2e-07  Score=88.12  Aligned_cols=95  Identities=15%  Similarity=0.177  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      +...|..++..|++++|+..|+++++.          .|..+.++..+|.++...|++++|+..+++++.+.       |
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~----------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-------P   67 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDL----------DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-------P   67 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------c
Confidence            667889999999999999999999998          77778899999999999999999999999998875       4


Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (519)
                      ....+++.+|.++...|++++|+..|++++.+
T Consensus        68 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l   99 (356)
T PLN03088         68 SLAKAYLRKGTACMKLEEYQTAKAALEKGASL   99 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            45567999999999999999999999999986

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=98.75  E-value=7.8e-05  Score=73.63  Aligned_cols=264  Identities=11%  Similarity=0.017  Sum_probs=169.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcC--CCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC
Q 010063          163 AILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK--DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT  240 (519)
Q Consensus       163 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  240 (519)
                      ..-...++......++.+|..++.++.......+  ......+...-..|.+....|++++|+++.+.++......   .
T Consensus       416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~---~  492 (894)
T COG2909         416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA---A  492 (894)
T ss_pred             hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc---c
Confidence            3444557777889999999999988776654311  1112334434455777888999999999999998865332   2


Q ss_pred             CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (519)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (519)
                      ....+.++..+|.+..-.|++++|..+..++.++.+...  .......+....+.++..+|+...|.  -.++.......
T Consensus       493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~~~l~~~~~~~~s~il~~qGq~~~a~--~~~~~~~~~~q  568 (894)
T COG2909         493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--VYHLALWSLLQQSEILEAQGQVARAE--QEKAFNLIREQ  568 (894)
T ss_pred             chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHH
Confidence            234466788899999999999999999999999987753  23334556667788999999333332  22222222222


Q ss_pred             cCCCChh---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010063          321 YGENDGR---VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  397 (519)
Q Consensus       321 ~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (519)
                      .....+.   ...+...+...+.   +++.+..-....++.....   .+.+......+..|+.++...|+.++|...+.
T Consensus       569 ~l~q~~~~~f~~~~r~~ll~~~~---r~~~~~~ear~~~~~~~~~---~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~  642 (894)
T COG2909         569 HLEQKPRHEFLVRIRAQLLRAWL---RLDLAEAEARLGIEVGSVY---TPQPLLSRLALSMLAELEFLRGDLDKALAQLD  642 (894)
T ss_pred             HhhhcccchhHHHHHHHHHHHHH---HHhhhhHHhhhcchhhhhc---ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            1122232   2223333333333   3777777677766664432   23333333334689999999999999999999


Q ss_pred             HHHHHHHHhhCCCChhH-HHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010063          398 ECLLITEKYKGKEHPSF-VTHLLNLAASYSRSKNFVEAERLLRIC  441 (519)
Q Consensus       398 ~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (519)
                      +.........  .++.. +.++.........+|+..+|.....+.
T Consensus       643 ~~~~l~~~~~--~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s  685 (894)
T COG2909         643 ELERLLLNGQ--YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS  685 (894)
T ss_pred             HHHHHhcCCC--CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence            9887765431  23332 333334444566789999888877663

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.75  E-value=4.9e-07  Score=68.38  Aligned_cols=102  Identities=28%  Similarity=0.305  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCC
Q 010063          288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  367 (519)
Q Consensus       288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  367 (519)
                      .+.+.+|.++...|+.++|+.+|++++..     |...+....++..+|..+...|++++|+..+++++..       .|
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-------~p   69 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-------FP   69 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------CC
Confidence            35788999999999999999999999884     3445666779999999999999999999999998865       24


Q ss_pred             CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010063          368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  401 (519)
Q Consensus       368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  401 (519)
                      +++........++.++...|+.++|+..+-.++.
T Consensus        70 ~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   70 DDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             CccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4333344556788999999999999999877664

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.73  E-value=2.2e-06  Score=78.36  Aligned_cols=132  Identities=20%  Similarity=0.204  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (519)
                      ..+.+..+..++..|++++|+..++..+..        .|.....+...+.++...|+..+|.+.+++++..        
T Consensus       306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--------  369 (484)
T COG4783         306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--------  369 (484)
T ss_pred             hHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------
Confidence            556778888888999999999998886653        5666777778889999999999999999999885        


Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (519)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (519)
                      .|.......++|..+.+.|++.+|+..++..+..       .++++   ..|..||..|..+|+..+|...+.+....
T Consensus       370 ~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-------~p~dp---~~w~~LAqay~~~g~~~~a~~A~AE~~~~  437 (484)
T COG4783         370 DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-------DPEDP---NGWDLLAQAYAELGNRAEALLARAEGYAL  437 (484)
T ss_pred             CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-------CCCCc---hHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence            4555567788899999999999888888876654       23333   34567888888888888777776665544

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.72  E-value=1.2e-07  Score=67.95  Aligned_cols=84  Identities=20%  Similarity=0.199  Sum_probs=65.4

Q ss_pred             HcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHH
Q 010063          130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM  209 (519)
Q Consensus       130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l  209 (519)
                      ..|+++.|+.+++++++.       .+..+ ....+..+|.+++..|++++|+.++++ ....       +......+.+
T Consensus         1 ~~~~y~~Ai~~~~k~~~~-------~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-------~~~~~~~~l~   64 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLEL-------DPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-------PSNPDIHYLL   64 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHH-------HCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-------HCHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHH-------CCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-------CCCHHHHHHH
Confidence            368999999999999987       22123 566777899999999999999999988 3332       3334456677


Q ss_pred             HHHHHccccHHHHHHHHHHH
Q 010063          210 GSMYSTLENYEKSMLVYQRV  229 (519)
Q Consensus       210 ~~~~~~~g~~~~A~~~~~~a  229 (519)
                      |.++...|++++|+..++++
T Consensus        65 a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   65 ARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHhcC
Confidence            99999999999999999875

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.69  E-value=6.6e-07  Score=83.22  Aligned_cols=95  Identities=17%  Similarity=0.080  Sum_probs=85.5

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063          248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  327 (519)
Q Consensus       248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  327 (519)
                      +...|...+..|++++|+..|++++++        .|....++.++|.++...|++++|+..+++++.+        .|.
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~   68 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS   68 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence            345688888999999999999999987        5566789999999999999999999999999986        456


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          328 VGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      ...++..+|.++...|++++|+..|++++.+
T Consensus        69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l   99 (356)
T PLN03088         69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL   99 (356)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            6678999999999999999999999999987

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.67  E-value=5.7e-05  Score=72.60  Aligned_cols=207  Identities=13%  Similarity=0.169  Sum_probs=120.3

Q ss_pred             HHHHH-HHHHHcCChhHHHHHHHH------HHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhh
Q 010063          121 LFNEV-KSMIMMGNKNDAIDLLQA------NYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD  193 (519)
Q Consensus       121 l~~~~-~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  193 (519)
                      +++.+ ..+-+..++++|+++|++      ++++.+-.+     +......-...|.-+...|+++.|+..|-++....+
T Consensus       663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf-----p~evv~lee~wg~hl~~~~q~daainhfiea~~~~k  737 (1636)
T KOG3616|consen  663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF-----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIK  737 (1636)
T ss_pred             HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC-----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHH
Confidence            44444 445567788888888875      344443333     444444445677778888899988887755432221


Q ss_pred             h----cCC--------------CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 010063          194 S----LKD--------------DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL  255 (519)
Q Consensus       194 ~----~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  255 (519)
                      .    ++.              +.......|-.++.-|...|+|+.|.++|.++-..                ..-...|
T Consensus       738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~----------------~dai~my  801 (1636)
T KOG3616|consen  738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLF----------------KDAIDMY  801 (1636)
T ss_pred             HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchh----------------HHHHHHH
Confidence            1    000              00001111334566667777777777776654211                1123456


Q ss_pred             hhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHH------HHHHHHHHHhcCC------
Q 010063          256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF------SRILKIYTKVYGE------  323 (519)
Q Consensus       256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~------  323 (519)
                      .+.|++..|.++-++..         ........|...+.-+-..|+|.+|+.+|      .+++.++.+..-.      
T Consensus       802 ~k~~kw~da~kla~e~~---------~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirl  872 (1636)
T KOG3616|consen  802 GKAGKWEDAFKLAEECH---------GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRL  872 (1636)
T ss_pred             hccccHHHHHHHHHHhc---------CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHH
Confidence            66777777666554442         13345566667777777888888877766      4556665544211      


Q ss_pred             ---CChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010063          324 ---NDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALR  357 (519)
Q Consensus       324 ---~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~  357 (519)
                         .|++ ...+...+|.-+...|+...|...|-++-+
T Consensus       873 v~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d  910 (1636)
T KOG3616|consen  873 VEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD  910 (1636)
T ss_pred             HHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence               1222 334566778888888888888887776544

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.66  E-value=2.1e-07  Score=66.64  Aligned_cols=83  Identities=18%  Similarity=0.287  Sum_probs=65.7

Q ss_pred             cccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 010063          216 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  295 (519)
Q Consensus       216 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  295 (519)
                      +|+++.|+.+++++++...     .++ ....+..+|.+|+..|++++|+.++++ .+.        .+........+|.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~-----~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a~   66 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDP-----TNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLAR   66 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHC-----GTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCC-----CCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHHH
Confidence            6899999999999998742     123 455677799999999999999999998 443        2334566777899


Q ss_pred             HHHhCCCHHHHHHHHHHH
Q 010063          296 LFIKEGKAVDAESVFSRI  313 (519)
Q Consensus       296 ~~~~~g~~~~A~~~~~~a  313 (519)
                      ++..+|++++|+..++++
T Consensus        67 ~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   67 CLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHTT-HHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHhcC
Confidence            999999999999999875

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=3.2e-05  Score=63.77  Aligned_cols=197  Identities=15%  Similarity=0.141  Sum_probs=126.9

Q ss_pred             HHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 010063          254 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMC  333 (519)
Q Consensus       254 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  333 (519)
                      .+.-.+++++|.++|.++-.+                      |....+|..|-..|.++-+...+..  +..+.+.+|.
T Consensus        23 lfgg~~k~eeAadl~~~Aan~----------------------yklaK~w~~AG~aflkaA~~h~k~~--skhDaat~Yv   78 (288)
T KOG1586|consen   23 LFGGSNKYEEAAELYERAANM----------------------YKLAKNWSAAGDAFLKAADLHLKAG--SKHDAATTYV   78 (288)
T ss_pred             ccCCCcchHHHHHHHHHHHHH----------------------HHHHHhHHHHHHHHHHHHHHHHhcC--CchhHHHHHH
Confidence            334456888888888877554                      3334455666666666666555542  2234455555


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHhhCCCCh
Q 010063          334 SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV-GRGQEGRELLEECLLITEKYKGKEHP  412 (519)
Q Consensus       334 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~  412 (519)
                      ..+.+| +.+++++|..+++++++++..+    ......+..+..+|.+|... .++++|+.+|+++-+.+...-  ...
T Consensus        79 eA~~cy-kk~~~~eAv~cL~~aieIyt~~----Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee--s~s  151 (288)
T KOG1586|consen   79 EAANCY-KKVDPEEAVNCLEKAIEIYTDM----GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE--SVS  151 (288)
T ss_pred             HHHHHh-hccChHHHHHHHHHHHHHHHhh----hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh--hhh
Confidence            555555 4459999999999999998774    22333445567889998865 899999999999998875431  122


Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcc----hhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063          413 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS----ISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (519)
Q Consensus       413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (519)
                      ..-.++...|..-...++|.+|+..|++.....-     +++.    .-.-+..-|.++....+.-.+...+++..++
T Consensus       152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~-----~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~  224 (288)
T KOG1586|consen  152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL-----DNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL  224 (288)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence            2335666778888888999999999998766321     2221    1222344566666667766665555555443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.63  E-value=3.1e-07  Score=62.96  Aligned_cols=64  Identities=19%  Similarity=0.378  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG-KAVDAESVFSRILKI  316 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~  316 (519)
                      +.++..+|.++...|++++|+.+|++++++        +|....++.++|.++..+| ++++|+..+++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            567889999999999999999999999998        5777899999999999999 799999999999985

...

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.62  E-value=2.3e-05  Score=66.31  Aligned_cols=175  Identities=15%  Similarity=0.142  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (519)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (519)
                      ...+++.+...++.|++++|++.|+.....       .+..|....+...++.+++..+++++|+...++-+...    +
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-------~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly----P  102 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSR-------HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY----P  102 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC----C
Confidence            345899999999999999999999988755       55577778899999999999999999999999988876    7


Q ss_pred             CchHHHHHHHHHHHHHHcc-----ccHHHHHHHHHHHHHHHHHhcCCCCH--------------HHHHHHHHHHHHHhhc
Q 010063          198 DEPLLDAILLHMGSMYSTL-----ENYEKSMLVYQRVINVLESRYGKTSI--------------LLVTSLLGMAKVLGSI  258 (519)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~--------------~~~~~~~~la~~~~~~  258 (519)
                      .+|....+++..|.+++..     .+...+...+...-++..+.  |+++              .++.--..+|..|.+.
T Consensus       103 ~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr  180 (254)
T COG4105         103 THPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKR  180 (254)
T ss_pred             CCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7788888888888886643     23333333333333333322  2222              1222334678899999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHH
Q 010063          259 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF  310 (519)
Q Consensus       259 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  310 (519)
                      |.+..|+..++.+++-..     +.+....++..+...|..+|-.++|...-
T Consensus       181 ~~~~AA~nR~~~v~e~y~-----~t~~~~eaL~~l~eaY~~lgl~~~a~~~~  227 (254)
T COG4105         181 GAYVAAINRFEEVLENYP-----DTSAVREALARLEEAYYALGLTDEAKKTA  227 (254)
T ss_pred             cChHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence            999999999999988643     34556778889999999999999987653

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=98.61  E-value=0.00097  Score=67.35  Aligned_cols=358  Identities=13%  Similarity=0.071  Sum_probs=218.5

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHH-HhcCCCChHHHHHHHHHHH--HHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQ-INAGNKGIEEVAILDIIAL--GYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (519)
                      .+-.+......+..+++++..+++....+.. ..... .++...++..+-.  ++...|+++.+...+++.....+....
T Consensus       182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~-~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~  260 (608)
T PF10345_consen  182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV-HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKK  260 (608)
T ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC-CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc
Confidence            4444555567788899999999998776654 22222 4444555554443  456788888888877765554433211


Q ss_pred             Cc-------------------------h----------HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcC---C
Q 010063          198 DE-------------------------P----------LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG---K  239 (519)
Q Consensus       198 ~~-------------------------~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~  239 (519)
                      ..                         +          ...-++..-|......|..++|.++++++++..++...   .
T Consensus       261 ~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~  340 (608)
T PF10345_consen  261 SPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPS  340 (608)
T ss_pred             CccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCC
Confidence            10                         1          11223444466677778888999999999999888651   1


Q ss_pred             CCH---------------HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHhCCCH
Q 010063          240 TSI---------------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT-ESADLVLPLFSLGSLFIKEGKA  303 (519)
Q Consensus       240 ~~~---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~  303 (519)
                      ..+               .....+...+.+....|++.+|....+.+.+...+...+ ........++..|..+...|+.
T Consensus       341 ~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l  420 (608)
T PF10345_consen  341 APSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDL  420 (608)
T ss_pred             CCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCH
Confidence            100               123345567778888999999999999888776554321 1233466778889999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHH
Q 010063          304 VDAESVFSRILKIYTKVYGEN---DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA  380 (519)
Q Consensus       304 ~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la  380 (519)
                      +.|..+|.+..-.......+.   ..-...+..|+..++...+.-.....-+.+.++..+.... .........++..+-
T Consensus       421 ~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~-~~~~~~~~~a~~~~~  499 (608)
T PF10345_consen  421 EAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCS-NSPNSYNRTAYCLVL  499 (608)
T ss_pred             HHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCcccc-CCccHHHHHHHHHHH
Confidence            999999985553332222222   2224456667788887766544422222333332211100 111122222222222


Q ss_pred             HHHH--HcCChHHHHHHHHHHHHHH-HHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchh
Q 010063          381 ELLH--IVGRGQEGRELLEECLLIT-EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS  457 (519)
Q Consensus       381 ~~~~--~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  457 (519)
                      ..+.  ..-...++...+.++++.. ...  .+......++..++..++ .|+..+.......+.....+.  ++.....
T Consensus       500 ~~~~~~~~~~~ne~k~~l~~~L~~~~~~~--~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~--~d~~~~L  574 (608)
T PF10345_consen  500 ATYNTFEPFSSNEAKRHLQEALKMANNKL--GNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKS--SDYSDQL  574 (608)
T ss_pred             HHHhhCCccccHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh--hhhhhHH
Confidence            2222  2234458999999999988 444  234445556777777777 889888888888888877665  2222323


Q ss_pred             H---HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010063          458 F---PMLHLGITLYHLNRDKEAEKLVLEALY  485 (519)
Q Consensus       458 ~---~~~~la~~~~~~g~~~~A~~~~~~a~~  485 (519)
                      .   +-..++..+...|+.++|.....+.-.
T Consensus       575 W~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~  605 (608)
T PF10345_consen  575 WHLVASGMLADSYEVQGDRDKAEEARQQLDR  605 (608)
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            2   333567778899999999998877654

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=2e-06  Score=77.11  Aligned_cols=139  Identities=19%  Similarity=0.235  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010063          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (519)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (519)
                      ....-|+.|++.|+|..|...|++++.........+..       ....++.|++.++.++++|.+|+....+++.+   
T Consensus       210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~---  286 (397)
T KOG0543|consen  210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL---  286 (397)
T ss_pred             HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc---
Confidence            35677999999999999999999999887643222211       34567899999999999999999999999987   


Q ss_pred             hcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHH-HHHHHHHH
Q 010063          278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA-VELYKKAL  356 (519)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al  356 (519)
                           .+....+++.-|.++..+|+++.|+..|++++++        .|..-.+...+..+-.+..++.+. .+.|..+.
T Consensus       287 -----~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF  353 (397)
T KOG0543|consen  287 -----DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMYANMF  353 (397)
T ss_pred             -----CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                 5667899999999999999999999999999996        344445556666665554444433 56666666


Q ss_pred             HHH
Q 010063          357 RVI  359 (519)
Q Consensus       357 ~~~  359 (519)
                      ...
T Consensus       354 ~k~  356 (397)
T KOG0543|consen  354 AKL  356 (397)
T ss_pred             hcc
Confidence            543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.60  E-value=1.1e-05  Score=82.66  Aligned_cols=210  Identities=16%  Similarity=0.104  Sum_probs=159.3

Q ss_pred             CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (519)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (519)
                      +|.....|...-..+...++.++|.+..++|+....-..+........++.||-.   .-|.-+.-.+.|++|.+.+   
T Consensus      1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn---~yG~eesl~kVFeRAcqyc--- 1527 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLEN---AYGTEESLKKVFERACQYC--- 1527 (1710)
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHH---hhCcHHHHHHHHHHHHHhc---
Confidence            3444555666667788899999999999999976411111112233444444444   4456677778888888764   


Q ss_pred             cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010063          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL  400 (519)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  400 (519)
                            +....+..|..+|...+++++|.++++.+++.+.+.          ...|..++..+.++++-+.|..++.+|+
T Consensus      1528 ------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~----------~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1528 ------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT----------RKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred             ------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch----------hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence                  223467889999999999999999999999986532          4567889999999999999999999999


Q ss_pred             HHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHH
Q 010063          401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV  480 (519)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  480 (519)
                      ....+.   .|   .......|.+-++.|+.+.+..+|+..+.        .+|...+.|..+...-.+.|+.+.+..+|
T Consensus      1592 ~~lPk~---eH---v~~IskfAqLEFk~GDaeRGRtlfEgll~--------ayPKRtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1592 KSLPKQ---EH---VEFISKFAQLEFKYGDAERGRTLFEGLLS--------AYPKRTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred             hhcchh---hh---HHHHHHHHHHHhhcCCchhhHHHHHHHHh--------hCccchhHHHHHHHHHHccCCHHHHHHHH
Confidence            876442   23   35566778899999999999999998887        45777777888888888899999999999


Q ss_pred             HHHHHH
Q 010063          481 LEALYI  486 (519)
Q Consensus       481 ~~a~~~  486 (519)
                      ++++.+
T Consensus      1658 eRvi~l 1663 (1710)
T KOG1070|consen 1658 ERVIEL 1663 (1710)
T ss_pred             HHHHhc
Confidence            888774

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.60  E-value=2.3e-06  Score=75.12  Aligned_cols=103  Identities=14%  Similarity=0.073  Sum_probs=89.3

Q ss_pred             HHHHHHHHH-HHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC
Q 010063          120 ELFNEVKSM-IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (519)
Q Consensus       120 ~l~~~~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (519)
                      ..+..+..+ ...|+|++|+..|+..++.       .++.+..+.+++.+|.+|+..|++++|+..|+.++...    ++
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~-------yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y----P~  212 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK-------YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY----PK  212 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CC
Confidence            356666665 6679999999999999987       55566668899999999999999999999999988775    66


Q ss_pred             chHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Q 010063          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL  233 (519)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  233 (519)
                      ++....+++.+|.++...|++++|...|+++++.+
T Consensus       213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y  247 (263)
T PRK10803        213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY  247 (263)
T ss_pred             CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            67888889999999999999999999999988764

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.60  E-value=3.1e-05  Score=79.58  Aligned_cols=248  Identities=15%  Similarity=0.159  Sum_probs=177.8

Q ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (519)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (519)
                      |.-+..|......+.+.++.++|.+..++|+....-.-+.....+..++.|+-..   -|.-+.-.+.|++|.+.+.   
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~---yG~eesl~kVFeRAcqycd--- 1528 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENA---YGTEESLKKVFERACQYCD--- 1528 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHh---hCcHHHHHHHHHHHHHhcc---
Confidence            5555557777777889999999999999999865211111122344445554444   4566777788888887642   


Q ss_pred             CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010063          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (519)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (519)
                            ...++..|..+|...+++++|.++++..++-+.        ....+|...+..++.+.+-+.|...+.+|+...
T Consensus      1529 ------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1529 ------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred             ------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence                  246788899999999999999999999998653        345678889999999999999999999999985


Q ss_pred             HhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHH
Q 010063          360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  439 (519)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  439 (519)
                      .+     ..|.   ......|.+-++.|+.+.+..+|+..+.        .+|...+.|..+...-...|+.+.+..+|+
T Consensus      1595 Pk-----~eHv---~~IskfAqLEFk~GDaeRGRtlfEgll~--------ayPKRtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1595 PK-----QEHV---EFISKFAQLEFKYGDAERGRTLFEGLLS--------AYPKRTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred             ch-----hhhH---HHHHHHHHHHhhcCCchhhHHHHHHHHh--------hCccchhHHHHHHHHHHccCCHHHHHHHHH
Confidence            43     1232   3346678999999999999999998876        356666778888888899999999999999


Q ss_pred             HHHHHHHHhcCCCCcchhHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHH
Q 010063          440 ICLDIMTKTVGPDDQSISFPMLHLGITLY-HLNRDKEAEKLVLEALYIREI  489 (519)
Q Consensus       440 ~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~  489 (519)
                      +++.+.      -.+..+..++..=.-|. ..|+-+.....=.+|.+..+.
T Consensus      1659 Rvi~l~------l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~s 1703 (1710)
T KOG1070|consen 1659 RVIELK------LSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVES 1703 (1710)
T ss_pred             HHHhcC------CChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHH
Confidence            999842      12333333333333333 346655555555566655543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.59  E-value=4.7e-07  Score=62.05  Aligned_cols=64  Identities=27%  Similarity=0.451  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Q 010063          287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG-NAEEAVELYKKALRV  358 (519)
Q Consensus       287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~  358 (519)
                      +..+..+|.++...|++++|+.+|++++++        +|....++.++|.++..+| ++++|+..+++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            578899999999999999999999999996        5777889999999999999 799999999999986

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.59  E-value=2.3e-06  Score=75.12  Aligned_cols=102  Identities=10%  Similarity=0.110  Sum_probs=86.9

Q ss_pred             HHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 010063          331 AMCSLAHAK-CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  409 (519)
Q Consensus       331 ~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  409 (519)
                      ..+..|..+ ...|++++|+..|++.++.       .|+......+++.+|.+|...|++++|+..|++++..+     +
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~-------yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P  211 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK-------YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----P  211 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence            445555544 5679999999999999987       35566666788999999999999999999999998764     4


Q ss_pred             CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063          410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (519)
Q Consensus       410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (519)
                      +++....++..+|.++...|++++|...|+++++.
T Consensus       212 ~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        212 KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            67788899999999999999999999999999884

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.58  E-value=6.2e-05  Score=63.56  Aligned_cols=250  Identities=16%  Similarity=0.092  Sum_probs=158.1

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHH
Q 010063          125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA  204 (519)
Q Consensus       125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  204 (519)
                      ++.++-.|+|..++...++.-.           .+........+...|..+|.+...+.-...        +. .+... 
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~-----------~~~~~e~d~y~~raylAlg~~~~~~~eI~~--------~~-~~~lq-   73 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSS-----------SKTDVELDVYMYRAYLALGQYQIVISEIKE--------GK-ATPLQ-   73 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhcc-----------ccchhHHHHHHHHHHHHccccccccccccc--------cc-CChHH-
Confidence            4556678888888776554321           224555667788889999988765443322        11 12222 


Q ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA  284 (519)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  284 (519)
                      +...++.+...-++.++-+.-..+-+..      .........+..-|.+|..-|++++|.+.......+          
T Consensus        74 Avr~~a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l----------  137 (299)
T KOG3081|consen   74 AVRLLAEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL----------  137 (299)
T ss_pred             HHHHHHHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH----------
Confidence            2455666666666655554444433221      111222334445688999999999999988774332          


Q ss_pred             hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHH
Q 010063          285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVIK  360 (519)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~  360 (519)
                         .+...-..++.++.+.+-|...++++.++-+.          .++..||..+..    .+++.+|.-+|++.-+.. 
T Consensus       138 ---E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided----------~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-  203 (299)
T KOG3081|consen  138 ---EAAALNVQILLKMHRFDLAEKELKKMQQIDED----------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-  203 (299)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH----------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-
Confidence               22233346677888899999998888876322          134445554443    345777777777654321 


Q ss_pred             hhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 010063          361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  440 (519)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  440 (519)
                           ++.    ..+++.++.+...+|++++|...++.++.        ..+....++.|+..+-...|...++.+-+-.
T Consensus       204 -----~~T----~~llnG~Av~~l~~~~~eeAe~lL~eaL~--------kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~  266 (299)
T KOG3081|consen  204 -----PPT----PLLLNGQAVCHLQLGRYEEAESLLEEALD--------KDAKDPETLANLIVLALHLGKDAEVTERNLS  266 (299)
T ss_pred             -----CCC----hHHHccHHHHHHHhcCHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence                 111    34568899999999999999999999987        3444567888888888888988777665544


Q ss_pred             HH
Q 010063          441 CL  442 (519)
Q Consensus       441 al  442 (519)
                      -+
T Consensus       267 QL  268 (299)
T KOG3081|consen  267 QL  268 (299)
T ss_pred             HH
Confidence            33

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.56  E-value=1.1e-06  Score=64.98  Aligned_cols=96  Identities=25%  Similarity=0.317  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCc
Q 010063          375 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ  454 (519)
Q Consensus       375 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  454 (519)
                      ++..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|..++++++...        |
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~   65 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P   65 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence            35788999999999999999999988752        2233678899999999999999999999998742        3


Q ss_pred             chhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063          455 SISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (519)
Q Consensus       455 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (519)
                      ....++..+|.++...|++++|..++.++++.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence            33367789999999999999999999988764

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.55  E-value=0.00012  Score=70.42  Aligned_cols=210  Identities=19%  Similarity=0.188  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHH------HHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 010063          246 TSLLGMAKVLGSIGRAKKAVEIYHR------VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  319 (519)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  319 (519)
                      ..|-.-|.+|.+..++++|+++|++      ++++.+-.+   +......-...|.-+...|+++.|+..|-++-...+.
T Consensus       662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka  738 (1636)
T KOG3616|consen  662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA  738 (1636)
T ss_pred             HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence            3455567777888888888888764      455544332   2233444455677778888899888887665332221


Q ss_pred             h---cC-CCChh-------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 010063          320 V---YG-ENDGR-------------VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL  382 (519)
Q Consensus       320 ~---~~-~~~~~-------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~  382 (519)
                      +   .+ ...+.             ....|..++.-|...|+|+-|.++|.++-..                  ..-...
T Consensus       739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~------------------~dai~m  800 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLF------------------KDAIDM  800 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchh------------------HHHHHH
Confidence            1   00 00010             1112344566677777777777777654221                  223455


Q ss_pred             HHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH------HHHHHHHHHhc-------
Q 010063          383 LHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL------RICLDIMTKTV-------  449 (519)
Q Consensus       383 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~-------  449 (519)
                      |-+.|++..|..+-++..       +  ...+...|...+.-+-..|+|.+|..+|      .+++.++.+..       
T Consensus       801 y~k~~kw~da~kla~e~~-------~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmir  871 (1636)
T KOG3616|consen  801 YGKAGKWEDAFKLAEECH-------G--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIR  871 (1636)
T ss_pred             HhccccHHHHHHHHHHhc-------C--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHH
Confidence            667777777766655432       1  2334455666666666777776666555      34444443321       


Q ss_pred             --CCCCcc-hhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010063          450 --GPDDQS-ISFPMLHLGITLYHLNRDKEAEKLVLEALY  485 (519)
Q Consensus       450 --~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  485 (519)
                        +..|++ ...+...+|.-|...|+...|...|-++-+
T Consensus       872 lv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d  910 (1636)
T KOG3616|consen  872 LVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD  910 (1636)
T ss_pred             HHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence              112332 345667889999999999999888766644

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=98.54  E-value=0.00048  Score=61.92  Aligned_cols=253  Identities=19%  Similarity=0.166  Sum_probs=147.2

Q ss_pred             HhcCChHHHHHHHHHHHhhhhh-cCCCchHHHHHHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHh--cCCCC----HHH
Q 010063          173 VYIGDLKFVQSLLDMMSGIVDS-LKDDEPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLESR--YGKTS----ILL  244 (519)
Q Consensus       173 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~--~~~~~----~~~  244 (519)
                      ...|+++.|..++.++...... .+.....++..+++.|......+ +++.|..+++++.++....  ....+    ...
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            4689999999999998877632 22333457788999999999999 9999999999999997541  01122    245


Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (519)
                      ..++..++.+|...+.++...+ ..++++..+...+ ++|   ..+..--.+....++.+++.+.+.+++...      +
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~---~~~~L~l~il~~~~~~~~~~~~L~~mi~~~------~  152 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKP---EVFLLKLEILLKSFDEEEYEEILMRMIRSV------D  152 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCc---HHHHHHHHHHhccCChhHHHHHHHHHHHhc------c
Confidence            6788899999999998865444 3444444444332 222   222222223333788999999988888742      1


Q ss_pred             Chh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcC--ChHHH--HHHHHHH
Q 010063          325 DGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG--RGQEG--RELLEEC  399 (519)
Q Consensus       325 ~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A--~~~~~~a  399 (519)
                      .++ ...........+.. .....|...+...+...-.   .+++. .....  -+..++...+  +....  ++..+..
T Consensus       153 ~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~---~~~~~-~~e~~--vl~~~~~~~~~~~~~~~~~i~~l~~~  225 (278)
T PF08631_consen  153 HSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFK---SSEDQ-WLEKL--VLTRVLLTTQSKDLSSSEKIESLEEL  225 (278)
T ss_pred             cccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhC---CChhH-HHHHH--HHHHHHHHcCCccccchhHHHHHHHH
Confidence            111 11111111111222 3345677777666654221   12222 22222  2222333222  22222  4444444


Q ss_pred             HHHHHHhhC-CCChhHH----HHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063          400 LLITEKYKG-KEHPSFV----THLLNLAASYSRSKNFVEAERLLRICLD  443 (519)
Q Consensus       400 l~~~~~~~~-~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (519)
                      +....+..+ +-.+...    ..+.+.|.-.++.++|++|..+|+-++.
T Consensus       226 ~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~  274 (278)
T PF08631_consen  226 LSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH  274 (278)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            443333222 2222222    3445678889999999999999997764

It is also involved in sporulation [].

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.53  E-value=3.9e-07  Score=61.58  Aligned_cols=60  Identities=25%  Similarity=0.230  Sum_probs=54.5

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          420 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       420 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                      .+|..+...|++++|+..|++++.        .+|....++..+|.++..+|++++|+.+|++++++.
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            578999999999999999999987        468889999999999999999999999999999764

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.53  E-value=3.2e-05  Score=65.23  Aligned_cols=243  Identities=14%  Similarity=0.118  Sum_probs=166.0

Q ss_pred             cCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010063          175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV  254 (519)
Q Consensus       175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  254 (519)
                      ..+.++|+..|++++++-   +.....-..++-.+..+++..|++++-+..|.+.+...+.....+...  .+.+.+-..
T Consensus        40 e~~p~~Al~sF~kVlelE---gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlDy  114 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELE---GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILDY  114 (440)
T ss_pred             ccCHHHHHHHHHHHHhcc---cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHH
Confidence            447889999999988876   444455556788899999999999999999999998876654444331  122223233


Q ss_pred             HhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCh----hHHH
Q 010063          255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG----RVGM  330 (519)
Q Consensus       255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~  330 (519)
                      -....+.+--...|+..++..+...  +......+-..||.+|...|+|.+-.+.+++.-..++.--|.++.    ....
T Consensus       115 iStS~~m~LLQ~FYeTTL~ALkdAK--NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLE  192 (440)
T KOG1464|consen  115 ISTSKNMDLLQEFYETTLDALKDAK--NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLE  192 (440)
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHhhh--cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhh
Confidence            3344455555667777776665543  233344556679999999999999988888888777665554432    2455


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 010063          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  410 (519)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  410 (519)
                      +|..-..+|..+++-.+-..+|++++.+-..    -|.+.....+...=|..+.+.|++++|-.-|-+|.+-+.+...+ 
T Consensus       193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSA----IPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGsp-  267 (440)
T KOG1464|consen  193 IYALEIQMYTEQKNNKKLKALYEQALHIKSA----IPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSP-  267 (440)
T ss_pred             hHhhHhhhhhhhcccHHHHHHHHHHHHhhcc----CCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCc-
Confidence            6666677888888888888999999987544    24455555555556778889999999988888887766655322 


Q ss_pred             ChhHHHHHHHHHHHHHhcc
Q 010063          411 HPSFVTHLLNLAASYSRSK  429 (519)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g  429 (519)
                      .....--|..||..+.+.|
T Consensus       268 RRttCLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  268 RRTTCLKYLVLANMLMKSG  286 (440)
T ss_pred             chhHHHHHHHHHHHHHHcC
Confidence            2222333455666666554

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.53  E-value=1.1e-06  Score=64.87  Aligned_cols=96  Identities=26%  Similarity=0.390  Sum_probs=81.3

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  326 (519)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  326 (519)
                      ++..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|..++++++...        +
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~   65 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P   65 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence            4678899999999999999999999876        23334778899999999999999999999998752        3


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      ....++..+|.++...|++++|..++.+++..
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence            33367889999999999999999999988764

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=7.5e-05  Score=61.65  Aligned_cols=196  Identities=14%  Similarity=0.122  Sum_probs=126.0

Q ss_pred             HccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 010063          214 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSL  293 (519)
Q Consensus       214 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  293 (519)
                      .-.+.+++|.++|.++-.++                      ....++..|-..|.++-+...+..  +..+.+.+|...
T Consensus        25 gg~~k~eeAadl~~~Aan~y----------------------klaK~w~~AG~aflkaA~~h~k~~--skhDaat~YveA   80 (288)
T KOG1586|consen   25 GGSNKYEEAAELYERAANMY----------------------KLAKNWSAAGDAFLKAADLHLKAG--SKHDAATTYVEA   80 (288)
T ss_pred             CCCcchHHHHHHHHHHHHHH----------------------HHHHhHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHH
Confidence            34457888888887765543                      333445555555556655554443  223445666666


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhccCCCCchHH
Q 010063          294 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIM  372 (519)
Q Consensus       294 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  372 (519)
                      +.+|.+ +++++|+..++++++++....  .-...+.-+..+|.+|... .++++|+.+|+++-+.++..    ......
T Consensus        81 ~~cykk-~~~~eAv~cL~~aieIyt~~G--rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e----es~ssA  153 (288)
T KOG1586|consen   81 ANCYKK-VDPEEAVNCLEKAIEIYTDMG--RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE----ESVSSA  153 (288)
T ss_pred             HHHhhc-cChHHHHHHHHHHHHHHHhhh--HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch----hhhhhH
Confidence            666654 589999999999999887652  2223445566788888765 89999999999999987642    223334


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063          373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE--HPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (519)
Q Consensus       373 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (519)
                      ..++...+..-...++|.+|+..|++.......   ..  ....-..+..-|.|++...+.-.+...+++-.+
T Consensus       154 NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~---n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~  223 (288)
T KOG1586|consen  154 NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD---NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE  223 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence            456667777778889999999999986553211   11  011223445567777777777666655555444

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.49  E-value=0.00026  Score=65.05  Aligned_cols=304  Identities=14%  Similarity=0.084  Sum_probs=183.3

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHH--HHHHHHHHHHccccHHHHHHHHHHHHH-HHHHh
Q 010063          160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA--ILLHMGSMYSTLENYEKSMLVYQRVIN-VLESR  236 (519)
Q Consensus       160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~  236 (519)
                      +.+..+...+..++..|++.+|.+.+...--....-+...|....  .++++|.++++.|.|.-+..+|.+|++ .....
T Consensus       238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL  317 (696)
T KOG2471|consen  238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL  317 (696)
T ss_pred             CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence            345567778889999999999999886532222222223344333  357999999999999999999999996 33332


Q ss_pred             cCC---C------CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCC-----
Q 010063          237 YGK---T------SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK-----  302 (519)
Q Consensus       237 ~~~---~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----  302 (519)
                      -..   .      .......+++.|..|...|++-.|.++|.++...+...        ...|..++.++....+     
T Consensus       318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n--------PrlWLRlAEcCima~~~~l~e  389 (696)
T KOG2471|consen  318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN--------PRLWLRLAECCIMALQKGLLE  389 (696)
T ss_pred             hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHHhhhhhhh
Confidence            111   0      11345678999999999999999999999999886542        2344445544432100     


Q ss_pred             --------------------------------------------HHHHHHHHHHHHHHHHHh------------------
Q 010063          303 --------------------------------------------AVDAESVFSRILKIYTKV------------------  320 (519)
Q Consensus       303 --------------------------------------------~~~A~~~~~~al~~~~~~------------------  320 (519)
                                                                  .+=|.-+++.++-+..+.                  
T Consensus       390 e~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~  469 (696)
T KOG2471|consen  390 EGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGS  469 (696)
T ss_pred             hccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCC
Confidence                                                        122333444444332100                  


Q ss_pred             ----------------c-------CCCChh--------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCc
Q 010063          321 ----------------Y-------GENDGR--------VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD  369 (519)
Q Consensus       321 ----------------~-------~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  369 (519)
                                      .       .+..|.        ....+.+.+.+-...|+.-.|+...++.++..+-.    ...
T Consensus       470 ~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~lS----~~~  545 (696)
T KOG2471|consen  470 SSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLADLS----KIY  545 (696)
T ss_pred             CCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhhhh----hHH
Confidence                            0       001111        12345566777788999999999998888764321    111


Q ss_pred             hHHHHHHHHHHHHHHHcCChHHHHHHHHHHH------HH--HHHhhCC-------------C-------Chh--HHHHHH
Q 010063          370 SIMENMRIDLAELLHIVGRGQEGRELLEECL------LI--TEKYKGK-------------E-------HPS--FVTHLL  419 (519)
Q Consensus       370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------~~--~~~~~~~-------------~-------~~~--~~~~~~  419 (519)
                      ...  -+..-|.++....+..+|...+.--+      .+  .+.-++.             .       .++  ......
T Consensus       546 kfL--GHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~  623 (696)
T KOG2471|consen  546 KFL--GHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFA  623 (696)
T ss_pred             HHH--HHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHH
Confidence            111  12234555566778888877664311      00  0000000             0       111  224578


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010063          420 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  483 (519)
Q Consensus       420 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (519)
                      +||.++.-+|++++|..++..+..+..+.   ..+. +  ...--.+-..+|+...|...+++.
T Consensus       624 nLa~a~alq~~~dqAk~ll~~aatl~hs~---v~~~-A--~~lavyidL~~G~~q~al~~lk~~  681 (696)
T KOG2471|consen  624 NLAAALALQGHHDQAKSLLTHAATLLHSL---VNVQ-A--TVLAVYIDLMLGRSQDALARLKQC  681 (696)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHhhhcc---ccHH-H--HHHHHHHHHhcCCCcchHHHHHhc
Confidence            99999999999999999999998875432   1111 1  111112234679999988877765

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.48  E-value=2.1e-05  Score=58.36  Aligned_cols=100  Identities=15%  Similarity=0.140  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCc
Q 010063          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (519)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (519)
                      .+-..+..+...|+.+.|++.|.+++.+          -|..+.+|++.+..+.-+|+.++|+.-+++++++.   ++..
T Consensus        45 ~LEl~~valaE~g~Ld~AlE~F~qal~l----------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa---g~~t  111 (175)
T KOG4555|consen   45 ELELKAIALAEAGDLDGALELFGQALCL----------APERASAYNNRAQALRLQGDDEEALDDLNKALELA---GDQT  111 (175)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHh----------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc---Cccc
Confidence            3555777889999999999999999998          88889999999999999999999999999999987   5555


Q ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (519)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (519)
                      .....++...|.+|..+|+.+.|..-|+.+-++
T Consensus       112 rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  112 RTACQAFVQRGLLYRLLGNDDAARADFEAAAQL  144 (175)
T ss_pred             hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence            666677889999999999999999999998776

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.48  E-value=1.3e-06  Score=58.91  Aligned_cols=59  Identities=25%  Similarity=0.361  Sum_probs=54.4

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      .+|..+...|++++|+..|+++++        .+|....++..+|.++..+|++++|+.+|+++++.
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            578999999999999999999997        56889999999999999999999999999999987

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.47  E-value=2.1e-06  Score=73.22  Aligned_cols=102  Identities=17%  Similarity=0.147  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      +++.+..++..|+|..|...|..-++.       .++.+..+.++++||.+++.+|++++|...|..+.+-.    +++|
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-------YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~----P~s~  212 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKK-------YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY----PKSP  212 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC----CCCC
Confidence            889999999999999999999998876       77788899999999999999999999999999888765    6667


Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVL  233 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  233 (519)
                      ....+++.+|.+....|+.++|...++++++.+
T Consensus       213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y  245 (262)
T COG1729         213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKRY  245 (262)
T ss_pred             CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence            777889999999999999999999999988764

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.45  E-value=0.00016  Score=61.41  Aligned_cols=172  Identities=16%  Similarity=0.127  Sum_probs=127.0

Q ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 010063          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  365 (519)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  365 (519)
                      -+..+++-|......|++++|...|+.....     .+..|..-.+...++..+.+.+++++|+...++-+..       
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l-------  100 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL-------  100 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-------
Confidence            3567888899999999999999999988753     2344556778899999999999999999999999887       


Q ss_pred             CCCchHHHHHHHHHHHHHHHc-----CChH---HHHHHHHHHHHHHHHhhCCCChh--------------HHHHHHHHHH
Q 010063          366 SLDDSIMENMRIDLAELLHIV-----GRGQ---EGRELLEECLLITEKYKGKEHPS--------------FVTHLLNLAA  423 (519)
Q Consensus       366 ~~~~~~~~~~~~~la~~~~~~-----g~~~---~A~~~~~~al~~~~~~~~~~~~~--------------~~~~~~~la~  423 (519)
                      .|.++....+++..|.++...     .+..   +|..-+++.+..+     |+.+.              .+.--..+|.
T Consensus       101 yP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-----PnS~Ya~dA~~~i~~~~d~LA~~Em~Iar  175 (254)
T COG4105         101 YPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-----PNSRYAPDAKARIVKLNDALAGHEMAIAR  175 (254)
T ss_pred             CCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666777777776643     2233   3444444444332     12211              1122245688


Q ss_pred             HHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHH
Q 010063          424 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL  479 (519)
Q Consensus       424 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  479 (519)
                      .|.+.|.+..|+..++++++-.     ++.+....++..+..+|..+|-.++|.+.
T Consensus       176 yY~kr~~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~lgl~~~a~~~  226 (254)
T COG4105         176 YYLKRGAYVAAINRFEEVLENY-----PDTSAVREALARLEEAYYALGLTDEAKKT  226 (254)
T ss_pred             HHHHhcChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence            9999999999999999999854     44566778889999999999999988765

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=8.7e-06  Score=73.08  Aligned_cols=138  Identities=12%  Similarity=0.143  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch--------HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Q 010063          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP--------LLDAILLHMGSMYSTLENYEKSMLVYQRVINVL  233 (519)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  233 (519)
                      +.....-|..|++.|+|..|...|++++.....-...++        ....++.+++.++..+++|.+|+....+++.+ 
T Consensus       208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-  286 (397)
T KOG0543|consen  208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-  286 (397)
T ss_pred             HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-
Confidence            334456789999999999999999998887753222222        13346889999999999999999999999986 


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHH-HHHHHH
Q 010063          234 ESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA-ESVFSR  312 (519)
Q Consensus       234 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~  312 (519)
                             .+....+++..|.++...|+|+.|+..|++++++        .|..-.+...+..+-....++.+. .+.|.+
T Consensus       287 -------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~  351 (397)
T KOG0543|consen  287 -------DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMYAN  351 (397)
T ss_pred             -------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   3445889999999999999999999999999998        444556666666665544444333 455555


Q ss_pred             HHH
Q 010063          313 ILK  315 (519)
Q Consensus       313 al~  315 (519)
                      ++.
T Consensus       352 mF~  354 (397)
T KOG0543|consen  352 MFA  354 (397)
T ss_pred             Hhh
Confidence            554

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.43  E-value=2.6e-05  Score=63.54  Aligned_cols=204  Identities=16%  Similarity=0.096  Sum_probs=131.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (519)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (519)
                      ...+..++..|..|-..|-..-|.--+.+++.+        .|..+.+++.+|..+...|+++.|.+.|...+++     
T Consensus        62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-----  128 (297)
T COG4785          62 EERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-----  128 (297)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-----
Confidence            455677888899999999999999999999987        6778899999999999999999999999999885     


Q ss_pred             CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHH-HHH
Q 010063          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE-ECL  400 (519)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-~al  400 (519)
                         +|..-.+..|.|..+..-|++.-|.+-+.+-.+.       ++.+|... .|..+.   ...-+..+|..-+. ++.
T Consensus       129 ---Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-------D~~DPfR~-LWLYl~---E~k~dP~~A~tnL~qR~~  194 (297)
T COG4785         129 ---DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-------DPNDPFRS-LWLYLN---EQKLDPKQAKTNLKQRAE  194 (297)
T ss_pred             ---CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-------CCCChHHH-HHHHHH---HhhCCHHHHHHHHHHHHH
Confidence               5666667888999999999999998776654443       34455432 111111   12335556654433 332


Q ss_pred             HHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHH
Q 010063          401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV  480 (519)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  480 (519)
                      ...++.         ..+ ++...|  .|+..+ ...++++....+.. ..-......+++.||..+...|+..+|..+|
T Consensus       195 ~~d~e~---------WG~-~iV~~y--LgkiS~-e~l~~~~~a~a~~n-~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~Lf  260 (297)
T COG4785         195 KSDKEQ---------WGW-NIVEFY--LGKISE-ETLMERLKADATDN-TSLAEHLTETYFYLGKYYLSLGDLDEATALF  260 (297)
T ss_pred             hccHhh---------hhH-HHHHHH--HhhccH-HHHHHHHHhhccch-HHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            221111         111 111112  122211 12233333221100 0001234567889999999999999999999


Q ss_pred             HHHHHH
Q 010063          481 LEALYI  486 (519)
Q Consensus       481 ~~a~~~  486 (519)
                      +-++.-
T Consensus       261 KLaian  266 (297)
T COG4785         261 KLAVAN  266 (297)
T ss_pred             HHHHHH
Confidence            988763

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.43  E-value=8.6e-05  Score=60.60  Aligned_cols=205  Identities=14%  Similarity=0.080  Sum_probs=132.7

Q ss_pred             ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (519)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (519)
                      +.+.+..++..|..|-..|-+.-|..-|.+++.+.       |..+.+++.+|..+...|+++.|.+.|...+++     
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~-------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-----  128 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-----  128 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC-------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-----
Confidence            55667788888999999999999999999988876       777778999999999999999999999988876     


Q ss_pred             CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHH
Q 010063          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFS-RILKI  316 (519)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~  316 (519)
                         +|..--+..+.|..++.-|++.-|.+-+.+-.+-     ++++|.... |..+   -...-++.+|..-+. ++...
T Consensus       129 ---Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~L-WLYl---~E~k~dP~~A~tnL~qR~~~~  196 (297)
T COG4785         129 ---DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRSL-WLYL---NEQKLDPKQAKTNLKQRAEKS  196 (297)
T ss_pred             ---CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHHH-HHHH---HHhhCCHHHHHHHHHHHHHhc
Confidence               3444556778899999999999998877665543     233343221 1111   122345666665443 33221


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHH
Q 010063          317 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL  396 (519)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  396 (519)
                             +...  .-++ +...|  .|+..+ ...++++.....+.   ..-......+++.+|..+...|+.++|..+|
T Consensus       197 -------d~e~--WG~~-iV~~y--LgkiS~-e~l~~~~~a~a~~n---~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~Lf  260 (297)
T COG4785         197 -------DKEQ--WGWN-IVEFY--LGKISE-ETLMERLKADATDN---TSLAEHLTETYFYLGKYYLSLGDLDEATALF  260 (297)
T ss_pred             -------cHhh--hhHH-HHHHH--HhhccH-HHHHHHHHhhccch---HHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence                   1111  1121 11222  232211 12233333322110   0112334567889999999999999999999


Q ss_pred             HHHHHH
Q 010063          397 EECLLI  402 (519)
Q Consensus       397 ~~al~~  402 (519)
                      +-++..
T Consensus       261 KLaian  266 (297)
T COG4785         261 KLAVAN  266 (297)
T ss_pred             HHHHHH
Confidence            988763

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=98.41  E-value=0.0013  Score=59.10  Aligned_cols=253  Identities=17%  Similarity=0.130  Sum_probs=145.4

Q ss_pred             HccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHH-hc-CCCC----hhh
Q 010063          214 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILEL-NR-GTES----ADL  286 (519)
Q Consensus       214 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~-~~-~~~~----~~~  286 (519)
                      +.+|+++.|..++.++-..............+..+++.|......+ ++++|..+++++.++.+. .. ...+    ...
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            5789999999999999877642211222367888999999999999 999999999999999755 11 1112    234


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCC
Q 010063          287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS  366 (519)
Q Consensus       287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  366 (519)
                      ..++..++.+|...+.++...+ ..++++..+..++ ++|...   ..--.+..+.++.+++.+.+.+++....-     
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~---~L~l~il~~~~~~~~~~~~L~~mi~~~~~-----  153 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVF---LLKLEILLKSFDEEEYEEILMRMIRSVDH-----  153 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHH---HHHHHHHhccCChhHHHHHHHHHHHhccc-----
Confidence            6688899999999888764444 4445555544432 233322   11222333378899999999888876321     


Q ss_pred             CCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHhcc--CHHHH--HHHHHHH
Q 010063          367 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSK--NFVEA--ERLLRIC  441 (519)
Q Consensus       367 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g--~~~~A--~~~~~~a  441 (519)
                      ++.+ +..+ .....-+.. .....|...+...+...-.    ..++ ..... .+-.++...+  +....  ++-.+..
T Consensus       154 ~e~~-~~~~-l~~i~~l~~-~~~~~a~~~ld~~l~~r~~----~~~~~~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~~  225 (278)
T PF08631_consen  154 SESN-FDSI-LHHIKQLAE-KSPELAAFCLDYLLLNRFK----SSEDQWLEKL-VLTRVLLTTQSKDLSSSEKIESLEEL  225 (278)
T ss_pred             ccch-HHHH-HHHHHHHHh-hCcHHHHHHHHHHHHHHhC----CChhHHHHHH-HHHHHHHHcCCccccchhHHHHHHHH
Confidence            1111 1111 111111222 2335566666665543211    1122 22221 1222222222  22222  3334444


Q ss_pred             HHHHHHhc-CCCCcch----hHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010063          442 LDIMTKTV-GPDDQSI----SFPMLHLGITLYHLNRDKEAEKLVLEAL  484 (519)
Q Consensus       442 l~~~~~~~-~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~  484 (519)
                      ++...+.. ++-.+..    ...+.+.|...++.++|++|..+|+-++
T Consensus       226 ~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  226 LSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            44333322 2222222    2335667889999999999999999776

It is also involved in sporulation [].

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.40  E-value=4.2e-05  Score=56.78  Aligned_cols=101  Identities=19%  Similarity=0.163  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 010063          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD  368 (519)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  368 (519)
                      .+-.-|....+.|+.+.|++.|.+++.++        |..+.+|+|.+..+.-+|+.++|++-+++++++.      ++.
T Consensus        45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa------g~~  110 (175)
T KOG4555|consen   45 ELELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA------GDQ  110 (175)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc------Ccc
Confidence            34445778889999999999999999974        6667899999999999999999999999999984      445


Q ss_pred             chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010063          369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (519)
Q Consensus       369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (519)
                      ......++...|.+|..+|+.+.|..-|+.+-.+.
T Consensus       111 trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  111 TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG  145 (175)
T ss_pred             chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence            66667788899999999999999999999987753

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.39  E-value=0.0013  Score=58.92  Aligned_cols=262  Identities=13%  Similarity=0.090  Sum_probs=174.8

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHH
Q 010063          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEE-VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL  202 (519)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  202 (519)
                      .+......|+++.|.+-|+.++.           +|+. .--+..+-..-...|+.+.|..+-+.+....       |..
T Consensus       126 eAQaal~eG~~~~Ar~kfeAMl~-----------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-------p~l  187 (531)
T COG3898         126 EAQAALLEGDYEDARKKFEAMLD-----------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-------PQL  187 (531)
T ss_pred             HHHHHHhcCchHHHHHHHHHHhc-----------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-------cCC
Confidence            34566789999999999998876           3332 2223333333467899999999999887766       444


Q ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHH--HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT--SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (519)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (519)
                      ..+....-...+..|+++.|+++.+.......  .+++......  .+..-+.... ..+...|...-.++.++      
T Consensus       188 ~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v--ie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL------  258 (531)
T COG3898         188 PWAARATLEARCAAGDWDGALKLVDAQRAAKV--IEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKL------  258 (531)
T ss_pred             chHHHHHHHHHHhcCChHHHHHHHHHHHHHHh--hchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhc------
Confidence            44555555667789999999999987665422  2223222222  2222222222 34577888888888776      


Q ss_pred             CCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (519)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (519)
                        .|+.+..-..-+..+...|+..++-.+++.+.+.      .-||++...       |....--+.++.-++++-.+..
T Consensus       259 --~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~------ePHP~ia~l-------Y~~ar~gdta~dRlkRa~~L~s  323 (531)
T COG3898         259 --APDLVPAAVVAARALFRDGNLRKGSKILETAWKA------EPHPDIALL-------YVRARSGDTALDRLKRAKKLES  323 (531)
T ss_pred             --CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc------CCChHHHHH-------HHHhcCCCcHHHHHHHHHHHHh
Confidence              4555666667788999999999999999998874      346665533       3333333455666666655432


Q ss_pred             hhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc-cCHHHHHHHHH
Q 010063          361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS-KNFVEAERLLR  439 (519)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~  439 (519)
                          +.+++   .......+..-...|++..|..-.+.+....        | ...++..|+.+-... |+-.++..++-
T Consensus       324 ----lk~nn---aes~~~va~aAlda~e~~~ARa~Aeaa~r~~--------p-res~~lLlAdIeeAetGDqg~vR~wlA  387 (531)
T COG3898         324 ----LKPNN---AESSLAVAEAALDAGEFSAARAKAEAAAREA--------P-RESAYLLLADIEEAETGDQGKVRQWLA  387 (531)
T ss_pred             ----cCccc---hHHHHHHHHHHHhccchHHHHHHHHHHhhhC--------c-hhhHHHHHHHHHhhccCchHHHHHHHH
Confidence                23333   3344668888899999999988877776542        2 224667788887655 99999999999


Q ss_pred             HHHH
Q 010063          440 ICLD  443 (519)
Q Consensus       440 ~al~  443 (519)
                      +++.
T Consensus       388 qav~  391 (531)
T COG3898         388 QAVK  391 (531)
T ss_pred             HHhc
Confidence            9887

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.38  E-value=0.00041  Score=58.76  Aligned_cols=258  Identities=17%  Similarity=0.127  Sum_probs=153.1

Q ss_pred             HHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010063          171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG  250 (519)
Q Consensus       171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  250 (519)
                      -++..|+|..++..-++....     .   ........+.+.|..+|.+..-+.-...+         . .+. ..+...
T Consensus        17 n~fY~Gnyq~~ine~~~~~~~-----~---~~~e~d~y~~raylAlg~~~~~~~eI~~~---------~-~~~-lqAvr~   77 (299)
T KOG3081|consen   17 NYFYLGNYQQCINEAEKFSSS-----K---TDVELDVYMYRAYLALGQYQIVISEIKEG---------K-ATP-LQAVRL   77 (299)
T ss_pred             HHHHhhHHHHHHHHHHhhccc-----c---chhHHHHHHHHHHHHcccccccccccccc---------c-CCh-HHHHHH
Confidence            345578887777665543221     1   12223455677777777765544322211         1 111 223334


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 010063          251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  330 (519)
Q Consensus       251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  330 (519)
                      ++.....-++.++-+.-..+-+..      ............-|.+|...|++++|++.......+             .
T Consensus        78 ~a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E  138 (299)
T KOG3081|consen   78 LAEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL-------------E  138 (299)
T ss_pred             HHHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH-------------H
Confidence            455544445444433333332221      112222334445578899999999999988763222             1


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHh
Q 010063          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKY  406 (519)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~  406 (519)
                      +...-..++.++.+++-|+..++++.++..+            .++..||..+..    .+++.+|.-+|++.-+     
T Consensus       139 ~~Al~VqI~lk~~r~d~A~~~lk~mq~ided------------~tLtQLA~awv~la~ggek~qdAfyifeE~s~-----  201 (299)
T KOG3081|consen  139 AAALNVQILLKMHRFDLAEKELKKMQQIDED------------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-----  201 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccchH------------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-----
Confidence            2222346777888999999988888876332            133556666554    3456677777766432     


Q ss_pred             hCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063          407 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (519)
Q Consensus       407 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (519)
                         ..+.+...++.++.++..+|++++|...++.++.        ..+....++.++-.+-...|...++..-+-.-+..
T Consensus       202 ---k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~--------kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~  270 (299)
T KOG3081|consen  202 ---KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD--------KDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL  270 (299)
T ss_pred             ---ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence               2344556788999999999999999999999998        33445667778877778888887766544333322


Q ss_pred             HHHhcCCCCCcc
Q 010063          487 REIAFGKDSLPV  498 (519)
Q Consensus       487 ~~~~~~~~~~~~  498 (519)
                          ..+.|+.+
T Consensus       271 ----~~p~h~~v  278 (299)
T KOG3081|consen  271 ----SHPEHPFV  278 (299)
T ss_pred             ----cCCcchHH
Confidence                23566654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.36  E-value=5.6e-06  Score=70.71  Aligned_cols=102  Identities=15%  Similarity=0.100  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 010063          376 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS  455 (519)
Q Consensus       376 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  455 (519)
                      .++.|.-+...|+|.+|...|..-++-+     ++.+....+++.||.+++.+|++++|...|..+..-     -|++|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P~s~K  213 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YPKSPK  213 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CCCCCC
Confidence            5778888899999999999999988754     566778889999999999999999999999998883     377888


Q ss_pred             hhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       456 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                      ..++++.||.+...+|+.++|...|+++++-+
T Consensus       214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~Y  245 (262)
T COG1729         214 APDALLKLGVSLGRLGNTDEACATLQQVIKRY  245 (262)
T ss_pred             ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence            89999999999999999999999999999866

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.33  E-value=0.00049  Score=58.08  Aligned_cols=186  Identities=17%  Similarity=0.203  Sum_probs=133.8

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhhhhhcCCCchHHH
Q 010063          125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDL-KFVQSLLDMMSGIVDSLKDDEPLLD  203 (519)
Q Consensus       125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~  203 (519)
                      +......|+..+.+.-+.......++..                 .. ..+|.. +..++.+++-+             .
T Consensus       129 Ae~~~~lgnpqesLdRl~~L~~~V~~ii-----------------~~-~e~~~~~ESsv~lW~KRl-------------~  177 (366)
T KOG2796|consen  129 AELQQYLGNPQESLDRLHKLKTVVSKIL-----------------AN-LEQGLAEESSIRLWRKRL-------------G  177 (366)
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHHHH-----------------HH-HHhccchhhHHHHHHHHH-------------H
Confidence            3444567888888777766655544332                 11 123333 44455554422             2


Q ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (519)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (519)
                      .+.+.+..++.-.|.|.-++..+.+.++.       +++........+|.+-+..|+.+.|..+++++-+...+..  +-
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~--~~  248 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD--GL  248 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh--cc
Confidence            34777888889999999999999988773       2233344556789999999999999999998776554443  22


Q ss_pred             hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      .....+..+.+.+|...+++.+|...+.+.+..        ++..+.+.++.|.+....|+...|++.++.+++.
T Consensus       249 q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  249 QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             chhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            334567788899999999999999999888763        5666778899999999999999999999998877

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=98.32  E-value=1.3e-06  Score=52.94  Aligned_cols=41  Identities=32%  Similarity=0.279  Sum_probs=28.5

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCc
Q 010063          457 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP  497 (519)
Q Consensus       457 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  497 (519)
                      +.++.+||.+|..+|++++|..++++++++.++++|++||+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            46789999999999999999999999999999999999985

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.31  E-value=4.4e-05  Score=74.29  Aligned_cols=135  Identities=15%  Similarity=0.107  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHcccc--------HHHHHHHHHH
Q 010063          160 EEVAILDIIALGYVYIGD---LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN--------YEKSMLVYQR  228 (519)
Q Consensus       160 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~  228 (519)
                      ..+.-++..|..+...++   ...|+.+|++++++.       |..+.++-.++.++.....        ...+....++
T Consensus       337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-------P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~  409 (517)
T PRK10153        337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-------PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN  409 (517)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            345556667777766655   778999999998875       5556566666666544322        2233333333


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHH
Q 010063          229 VINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAES  308 (519)
Q Consensus       229 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  308 (519)
                      ++.+      +..+....++..+|..+...|++++|...+++|+++        .| ...++..+|.++...|++++|++
T Consensus       410 a~al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--------~p-s~~a~~~lG~~~~~~G~~~eA~~  474 (517)
T PRK10153        410 IVAL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--------EM-SWLNYVLLGKVYELKGDNRLAAD  474 (517)
T ss_pred             hhhc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence            2222      112222466777888888899999999999999987        34 36799999999999999999999


Q ss_pred             HHHHHHHH
Q 010063          309 VFSRILKI  316 (519)
Q Consensus       309 ~~~~al~~  316 (519)
                      .|++|+.+
T Consensus       475 ~~~~A~~L  482 (517)
T PRK10153        475 AYSTAFNL  482 (517)
T ss_pred             HHHHHHhc
Confidence            99999986

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.30  E-value=0.0024  Score=57.25  Aligned_cols=301  Identities=12%  Similarity=0.017  Sum_probs=199.1

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchH
Q 010063          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL  201 (519)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  201 (519)
                      +..+......||-..|.++..++-.++.        ....+-++..-+..-...|+++.|.+-|+.++..        |.
T Consensus        88 LStGliAagAGda~lARkmt~~~~~lls--------sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d--------PE  151 (531)
T COG3898          88 LSTGLIAAGAGDASLARKMTARASKLLS--------SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD--------PE  151 (531)
T ss_pred             HhhhhhhhccCchHHHHHHHHHHHhhhh--------ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC--------hH
Confidence            3445555678888999988888765432        2223444555567777899999999999987643        33


Q ss_pred             HHH-HHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063          202 LDA-ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (519)
Q Consensus       202 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (519)
                      ... .+..|-.--...|..+.|..+-+++....        |....+....-......|+++.|+++.+.......-  +
T Consensus       152 tRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi--e  221 (531)
T COG3898         152 TRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVI--E  221 (531)
T ss_pred             HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh--c
Confidence            221 12233233356799999999999987764        222334444445667789999999999877654211  1


Q ss_pred             CCC--hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          281 TES--ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       281 ~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      ++.  ...+..+..-+.... ..+...|.....++.++        .|+..-.-..-+..++..|+..++-.+++.+-+.
T Consensus       222 ~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL--------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~  292 (531)
T COG3898         222 KDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKL--------APDLVPAAVVAARALFRDGNLRKGSKILETAWKA  292 (531)
T ss_pred             hhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhc--------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence            111  112222332333332 34577888888888775        3555555566788999999999999999988765


Q ss_pred             HHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH
Q 010063          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  438 (519)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  438 (519)
                              ..||.+       +..|....--+.++.-++++-.+..     -.++...+....+..-...|++..|..--
T Consensus       293 --------ePHP~i-------a~lY~~ar~gdta~dRlkRa~~L~s-----lk~nnaes~~~va~aAlda~e~~~ARa~A  352 (531)
T COG3898         293 --------EPHPDI-------ALLYVRARSGDTALDRLKRAKKLES-----LKPNNAESSLAVAEAALDAGEFSAARAKA  352 (531)
T ss_pred             --------CCChHH-------HHHHHHhcCCCcHHHHHHHHHHHHh-----cCccchHHHHHHHHHHHhccchHHHHHHH
Confidence                    234443       3445444444566666777655432     34566777888899999999999998887


Q ss_pred             HHHHHHHHHhcCCCCcchhHHHHHHHHHHHhc-CChHHHHHHHHHHHHH
Q 010063          439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHL-NRDKEAEKLVLEALYI  486 (519)
Q Consensus       439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~  486 (519)
                      +.+..+.        | ...++..|+.+-... |+-.+...++-+++..
T Consensus       353 eaa~r~~--------p-res~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         353 EAAAREA--------P-RESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HHHhhhC--------c-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            7776632        2 224567888888776 9999999999998863

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.29  E-value=2.7e-05  Score=59.92  Aligned_cols=104  Identities=18%  Similarity=0.190  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC
Q 010063          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (519)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (519)
                      ..++..|...+..|+|++|++.++.....       -+.++....+...++.+|+..|++++|+..+++.+++.    +.
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-------yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh----P~   79 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTR-------YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH----PT   79 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CC
Confidence            44889999999999999999999887765       55577777899999999999999999999999988874    78


Q ss_pred             chHHHHHHHHHHHHHHcccc---------------HHHHHHHHHHHHHHH
Q 010063          199 EPLLDAILLHMGSMYSTLEN---------------YEKSMLVYQRVINVL  233 (519)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~---------------~~~A~~~~~~al~~~  233 (519)
                      +|.+..+++..|.+++.+..               ..+|...|++.+..+
T Consensus        80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y  129 (142)
T PF13512_consen   80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY  129 (142)
T ss_pred             CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence            88888889999999888766               667777777666653

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.28  E-value=4.8e-05  Score=74.00  Aligned_cols=135  Identities=15%  Similarity=0.122  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHcCC---hhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHH----HHHHHHHHHhhh
Q 010063          120 ELFNEVKSMIMMGN---KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKF----VQSLLDMMSGIV  192 (519)
Q Consensus       120 ~l~~~~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~  192 (519)
                      .++-++..+...++   ...|+.+|++++++          +|+.+.++..++.+|.....+..    .......+....
T Consensus       341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l----------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKS----------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh----------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            35566666665554   78999999999998          88888888888887765433331    111222211111


Q ss_pred             hhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010063          193 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI  272 (519)
Q Consensus       193 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  272 (519)
                      ..+.. .+....++..+|......|++++|...+++|+.+.        +. ..+|..+|.++...|++++|++.|++|+
T Consensus       411 ~al~~-~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~  480 (517)
T PRK10153        411 VALPE-LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLAADAYSTAF  480 (517)
T ss_pred             hhccc-CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            11111 12223557778888888999999999999999873        22 5789999999999999999999999999


Q ss_pred             HH
Q 010063          273 TI  274 (519)
Q Consensus       273 ~~  274 (519)
                      .+
T Consensus       481 ~L  482 (517)
T PRK10153        481 NL  482 (517)
T ss_pred             hc
Confidence            87

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.27  E-value=7.8e-05  Score=68.29  Aligned_cols=318  Identities=12%  Similarity=0.029  Sum_probs=177.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHh-------
Q 010063          164 ILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR-------  236 (519)
Q Consensus       164 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------  236 (519)
                      .+...+......|.++...++++....+.+..+   |..   ++.--..|+..|..... ...++...+....       
T Consensus        19 ~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~---~v~---~n~av~~~~kt~~tq~~-~ll~el~aL~~~~~~~~~~~   91 (696)
T KOG2471|consen   19 SLLCQAHEQFNNSEFDRCLELLQELETRGESSG---PVL---HNRAVVSYYKTGCTQHS-VLLKELEALTADADAPGDVS   91 (696)
T ss_pred             HHHHHHHhccCCcchHHHHHHHHHHHhcccccc---cee---eehhhHHHHhcccchhH-HHHHHHHHHHHhhccccchh
Confidence            344445555678889988888877665543221   211   22222334455544322 2222222222111       


Q ss_pred             cCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063          237 YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (519)
Q Consensus       237 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (519)
                      .+-+.......+++.|.+|+....+..|++.....+...+...   ....+.+-...-.++....+.++|+.++.-.-++
T Consensus        92 ~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le---~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~  168 (696)
T KOG2471|consen   92 SGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLE---SSSAASVTLLSDLLAAETSQCEEALDYLNVLAEI  168 (696)
T ss_pred             cchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1112223345678889999999999999988887776654432   1222333334445566677778888766543333


Q ss_pred             HHHh----cCCC----------ChhHHH-----------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchH
Q 010063          317 YTKV----YGEN----------DGRVGM-----------AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI  371 (519)
Q Consensus       317 ~~~~----~~~~----------~~~~~~-----------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  371 (519)
                      ....    .|..          .|..+.           ........+....+..-+..-.+-+..+       ..+.  
T Consensus       169 ~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~-------a~~s--  239 (696)
T KOG2471|consen  169 EAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNI-------AQDS--  239 (696)
T ss_pred             HHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhh-------cCCC--
Confidence            2211    1100          111110           0111111222223333332222222222       1122  


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHH--HHHHHHHHHHHhccCHHHHHHHHHHHHH-HHHHh
Q 010063          372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV--THLLNLAASYSRSKNFVEAERLLRICLD-IMTKT  448 (519)
Q Consensus       372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~  448 (519)
                       ...+...+..+...|++.+|.+.+... .+.+...+...|...  ..++++|.++++.|.|.-+..+|.+|+. ...+.
T Consensus       240 -~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL  317 (696)
T KOG2471|consen  240 -SMALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL  317 (696)
T ss_pred             -cHHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence             223456788889999999999887653 222222222233333  3457999999999999999999999996 33332


Q ss_pred             cCCCC---------cchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH
Q 010063          449 VGPDD---------QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWF  512 (519)
Q Consensus       449 ~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  512 (519)
                      ...-.         -....++++.|..|...|++-.|.++|.++...+.     .+|..     |..|+.|+.
T Consensus       318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh-----~nPrl-----WLRlAEcCi  380 (696)
T KOG2471|consen  318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH-----RNPRL-----WLRLAECCI  380 (696)
T ss_pred             hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh-----cCcHH-----HHHHHHHHH
Confidence            21101         12346788999999999999999999999999884     23433     667777764

>PRK11906 transcriptional regulator; Provisional

Probab=98.27  E-value=6.1e-05  Score=69.59  Aligned_cols=163  Identities=11%  Similarity=0.048  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHcC---ChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhc---C------ChHHHHHHHHH
Q 010063          120 ELFNEVKSMIMMG---NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI---G------DLKFVQSLLDM  187 (519)
Q Consensus       120 ~l~~~~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g------~~~~A~~~~~~  187 (519)
                      .++..|...+..+   ..+.|+.+|.+++..       .+.+|..+.++..++.+++..   |      +..+|....++
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~-------~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r  329 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNK-------SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDY  329 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhc-------ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            3455555554444   356778888888832       233888899999999988654   2      22344445555


Q ss_pred             HHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHH
Q 010063          188 MSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI  267 (519)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  267 (519)
                      +.++.       +.-+.++..+|.+....|+++.|...|++|+.+        +|..+.+++..|.+....|+.++|.+.
T Consensus       330 Aveld-------~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~  394 (458)
T PRK11906        330 VSDIT-------TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARIC  394 (458)
T ss_pred             HHhcC-------CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            55443       333456889999999999999999999999986        466688999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCChh-hHHHHHHHHH-HHHhCCCHHHHHHHHHHH
Q 010063          268 YHRVITILELNRGTESAD-LVLPLFSLGS-LFIKEGKAVDAESVFSRI  313 (519)
Q Consensus       268 ~~~al~~~~~~~~~~~~~-~~~~~~~la~-~~~~~g~~~~A~~~~~~a  313 (519)
                      .++++++        +|. .......+-. .|+ ....++|+.+|-+-
T Consensus       395 i~~alrL--------sP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  433 (458)
T PRK11906        395 IDKSLQL--------EPRRRKAVVIKECVDMYV-PNPLKNNIKLYYKE  433 (458)
T ss_pred             HHHHhcc--------CchhhHHHHHHHHHHHHc-CCchhhhHHHHhhc
Confidence            9999987        333 2333334433 444 45678888877553

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.26  E-value=0.00021  Score=60.52  Aligned_cols=242  Identities=14%  Similarity=0.116  Sum_probs=161.8

Q ss_pred             HcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhc-CCCchHHHHHHHH
Q 010063          130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL-KDDEPLLDAILLH  208 (519)
Q Consensus       130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~  208 (519)
                      ...+.++|+.-|++++++      .+.....-..++..+..+++.+|+|++-...|.+.+...+.. ..+...  .+.+.
T Consensus        39 ~e~~p~~Al~sF~kVlel------EgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~  110 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLEL------EGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINS  110 (440)
T ss_pred             cccCHHHHHHHHHHHHhc------ccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHH
Confidence            345789999999999987      133445556688889999999999999999998877655431 111111  11233


Q ss_pred             HHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC----h
Q 010063          209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES----A  284 (519)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~  284 (519)
                      +-..-....+.+--..+|+..++..+..  .+......+-..+|.+|+..|+|.+-.+.+++.-.-++.-.|.++    .
T Consensus       111 IlDyiStS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGt  188 (440)
T KOG1464|consen  111 ILDYISTSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGT  188 (440)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccc
Confidence            3333334455555666777766665543  223333445567899999999999998888887777665544433    2


Q ss_pred             hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010063          285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA-MCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (519)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (519)
                      ....+|..-..+|..+.+-.+-..+|++++.+-...   .||....+ ...=|..+.+.|+|++|-.-|-+|.+-+.+. 
T Consensus       189 QLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI---PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEs-  264 (440)
T KOG1464|consen  189 QLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI---PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDES-  264 (440)
T ss_pred             hhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC---CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccccc-
Confidence            344556666778888888888888999999875444   35543322 3334667888999999998888888877663 


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHcC
Q 010063          364 YMSLDDSIMENMRIDLAELLHIVG  387 (519)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g  387 (519)
                        +.......--|.-||..+.+.|
T Consensus       265 --GspRRttCLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  265 --GSPRRTTCLKYLVLANMLMKSG  286 (440)
T ss_pred             --CCcchhHHHHHHHHHHHHHHcC
Confidence              3333333444566778777765

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.23  E-value=0.0061  Score=59.13  Aligned_cols=173  Identities=18%  Similarity=0.103  Sum_probs=118.7

Q ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCChh---HHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHhhccCCCCchH
Q 010063          299 KEGKAVDAESVFSRILKIYTKVYGENDGR---VGMAMCSLAHAKC----ANGNAEEAVELYKKALRVIKDSNYMSLDDSI  371 (519)
Q Consensus       299 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  371 (519)
                      -.|+-+.++..+.++.+. ...   ..|-   ....|+.....+.    .....+.|.+.++...+.+       |+.  
T Consensus       200 F~gdR~~GL~~L~~~~~~-~~i---~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-------P~s--  266 (468)
T PF10300_consen  200 FSGDRELGLRLLWEASKS-ENI---RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-------PNS--  266 (468)
T ss_pred             cCCcHHHHHHHHHHHhcc-CCc---chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-------CCc--
Confidence            468999999999887651 111   1111   1112222222222    2345667777777776653       333  


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCC
Q 010063          372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP  451 (519)
Q Consensus       372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  451 (519)
                       .-.+...|+++...|+.++|++.+++++....+.    ..-...++..+|.++..+++|++|..++.+..+.       
T Consensus       267 -~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-------  334 (468)
T PF10300_consen  267 -ALFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-------  334 (468)
T ss_pred             -HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-------
Confidence             3345788999999999999999999988533222    1223457889999999999999999999988872       


Q ss_pred             CCcchhHHHHHHHHHHHhcCCh-------HHHHHHHHHHHHHHHHhcCCCCC
Q 010063          452 DDQSISFPMLHLGITLYHLNRD-------KEAEKLVLEALYIREIAFGKDSL  496 (519)
Q Consensus       452 ~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~a~~~~~~~~~~~~~  496 (519)
                      +....+...+..|.++...|+.       ++|.++++++-.+..++.|...|
T Consensus       335 s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp  386 (468)
T PF10300_consen  335 SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLP  386 (468)
T ss_pred             cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCC
Confidence            3334444556778899999999       89999999999888887774444

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.23  E-value=4.6e-05  Score=70.71  Aligned_cols=119  Identities=19%  Similarity=0.128  Sum_probs=97.2

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhH
Q 010063          335 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF  414 (519)
Q Consensus       335 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  414 (519)
                      |-.++...++++.|+.++++..+.       .   +.   +...++.++...++-.+|+..+.+++.        ..|..
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~-------~---pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~--------~~p~d  233 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRER-------D---PE---VAVLLARVYLLMNEEVEAIRLLNEALK--------ENPQD  233 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhc-------C---Cc---HHHHHHHHHHhcCcHHHHHHHHHHHHH--------hCCCC
Confidence            344555678999999999886553       1   22   224589999999999999999999985        34444


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHH
Q 010063          415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE  482 (519)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  482 (519)
                      ...+...+..+...++++.|+...+++..+        .|....+|..|+.+|...|+++.|+..+..
T Consensus       234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  234 SELLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            778888999999999999999999999984        577788999999999999999999977653

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.22  E-value=5.7e-05  Score=70.09  Aligned_cols=119  Identities=18%  Similarity=0.168  Sum_probs=96.5

Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 010063          251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  330 (519)
Q Consensus       251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  330 (519)
                      +-.++...++++.|+.++++..+.        .|.   +...++.++...++..+|++.+.+++.        ..|....
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~--------~~p~d~~  235 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALK--------ENPQDSE  235 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHH--------hCCCCHH
Confidence            345556678999999999887653        343   445589999999999999999999996        3455577


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010063          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  398 (519)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  398 (519)
                      .+...+..+...++++.|+.+.+++....       |+   -...|..|+.+|...|++++|+..++.
T Consensus       236 LL~~Qa~fLl~k~~~~lAL~iAk~av~ls-------P~---~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  236 LLNLQAEFLLSKKKYELALEIAKKAVELS-------PS---EFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------ch---hHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            88889999999999999999999999882       22   255778999999999999999987764

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK15331 chaperone protein SicA; Provisional

Probab=98.22  E-value=1.2e-05  Score=63.38  Aligned_cols=101  Identities=8%  Similarity=0.009  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhh
Q 010063          114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD  193 (519)
Q Consensus       114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  193 (519)
                      ....+..++..+..++..|++++|..+|+-..-.          ++...+-+..||.++..+++|++|+..|..+..+..
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~----------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~  102 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY----------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK  102 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            3456777999999999999999999999987665          666677889999999999999999999998877652


Q ss_pred             hcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Q 010063          194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVIN  231 (519)
Q Consensus       194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  231 (519)
                          ++|.   ..+..|.+|...|+...|+..|+.++.
T Consensus       103 ----~dp~---p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        103 ----NDYR---PVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             ----CCCC---ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence                2222   267899999999999999999998877

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.22  E-value=4.8e-05  Score=58.60  Aligned_cols=105  Identities=17%  Similarity=0.095  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 010063          329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  408 (519)
Q Consensus       329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  408 (519)
                      ...+..-|.-.+..|+|++|++.++.....       -|..+....+...++.+|...|++++|+..+++-+++     .
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-------yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----h   77 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTR-------YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----H   77 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----C
Confidence            446778899999999999999999987765       3445555677889999999999999999999998886     4


Q ss_pred             CCChhHHHHHHHHHHHHHhccC---------------HHHHHHHHHHHHHHH
Q 010063          409 KEHPSFVTHLLNLAASYSRSKN---------------FVEAERLLRICLDIM  445 (519)
Q Consensus       409 ~~~~~~~~~~~~la~~~~~~g~---------------~~~A~~~~~~al~~~  445 (519)
                      +.||.+..+++..|.++..+..               ..+|...|++.+..+
T Consensus        78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y  129 (142)
T PF13512_consen   78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY  129 (142)
T ss_pred             CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence            6788888999999999988776               677777777777643

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.21  E-value=0.00033  Score=55.85  Aligned_cols=136  Identities=19%  Similarity=0.195  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (519)
                      ..-.+.+|....+.|++.+|..+|++++.-.       .......+..+++.....+++..|...+++..+...      
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~-------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p------  155 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGI-------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP------  155 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccc-------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC------
Confidence            4456788999999999999999999998631       233456778899999999999999999998877421      


Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010063          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (519)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (519)
                      ..........+|..+...|++.+|+..|+.++..+       +++.    .....+..+.++|+.++|..-+....+...
T Consensus       156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y-------pg~~----ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~  224 (251)
T COG4700         156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY-------PGPQ----ARIYYAEMLAKQGRLREANAQYVAVVDTAK  224 (251)
T ss_pred             ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC-------CCHH----HHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            11233345668999999999999999999999873       2222    235578899999999998887776655443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=5.9e-05  Score=65.41  Aligned_cols=113  Identities=19%  Similarity=0.213  Sum_probs=92.5

Q ss_pred             CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHH
Q 010063          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIY  317 (519)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~  317 (519)
                      +|..+..+..||.+|...|++..|...|.+++++        .++....+..+|.+++.+.   .-.++...+++++.. 
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~-  222 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL-  222 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-
Confidence            4556788999999999999999999999999998        4555677778888776543   457889999999984 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHH
Q 010063          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM  375 (519)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  375 (519)
                             +|....+...||..++..|+|.+|...++..++..      .++.+....+
T Consensus       223 -------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l------p~~~~rr~~i  267 (287)
T COG4235         223 -------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL------PADDPRRSLI  267 (287)
T ss_pred             -------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC------CCCCchHHHH
Confidence                   56777799999999999999999999999999873      4555554433

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=0.00011  Score=63.88  Aligned_cols=103  Identities=13%  Similarity=0.134  Sum_probs=86.0

Q ss_pred             ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccc---cHHHHHHHHHHHHHHHH
Q 010063          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE---NYEKSMLVYQRVINVLE  234 (519)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~  234 (519)
                      +|.+++-|..||.+|+..|+++.|...|.++.++.    +++|..   +..+|.++..+.   ...++...+++++..  
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~----g~n~~~---~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--  222 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA----GDNPEI---LLGLAEALYYQAGQQMTAKARALLRQALAL--  222 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC----CCCHHH---HHHHHHHHHHhcCCcccHHHHHHHHHHHhc--
Confidence            78888999999999999999999999999999886    444544   566777665543   456888999998875  


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010063          235 SRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (519)
Q Consensus       235 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (519)
                            +|....+.+.+|..++..|+|.+|...++..++..
T Consensus       223 ------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l  257 (287)
T COG4235         223 ------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL  257 (287)
T ss_pred             ------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence                  35557889999999999999999999999998863

>PRK15331 chaperone protein SicA; Provisional

Probab=98.19  E-value=4.1e-05  Score=60.39  Aligned_cols=100  Identities=16%  Similarity=0.088  Sum_probs=80.4

Q ss_pred             hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhc
Q 010063          370 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV  449 (519)
Q Consensus       370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  449 (519)
                      +......+..|.-+..+|++++|..+|+-....        ++.....+..||.++..+++|++|+..|..+..+.    
T Consensus        34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~----  101 (165)
T PRK15331         34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL----  101 (165)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----
Confidence            333455578899999999999999999865442        23334567899999999999999999999888753    


Q ss_pred             CCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010063          450 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  485 (519)
Q Consensus       450 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  485 (519)
                       .++|   ...+..|.+|..+|+.++|+..|+.+++
T Consensus       102 -~~dp---~p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        102 -KNDY---RPVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             -cCCC---CccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence             2333   3357889999999999999999999987

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=0.00071  Score=57.16  Aligned_cols=139  Identities=12%  Similarity=0.101  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCH
Q 010063          163 AILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI  242 (519)
Q Consensus       163 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  242 (519)
                      .+.+.+..++.-.|+|.-....+.+.++..   ++.+|.   ....+|.+-++-|+.+.|..++++..+......+.  .
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~---~e~~p~---L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~--q  249 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYY---PEQEPQ---LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL--Q  249 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHhC---CcccHH---HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc--c
Confidence            467788889999999999999999887733   233343   46689999999999999999999887665554222  2


Q ss_pred             HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (519)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (519)
                      ....+..+.+.+|.-.+++.+|...+.+.+..        ++..+.+.++.|.+....|+..+|++..+.++.+.
T Consensus       250 ~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~  316 (366)
T KOG2796|consen  250 GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD  316 (366)
T ss_pred             hhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            33556778899999999999999999888765        55667888999999999999999999999988763

>PRK11906 transcriptional regulator; Provisional

Probab=98.15  E-value=0.00013  Score=67.57  Aligned_cols=162  Identities=17%  Similarity=0.063  Sum_probs=116.4

Q ss_pred             HHHHHHHHHccc---cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc---------CCHHHHHHHHHHHHH
Q 010063          206 LLHMGSMYSTLE---NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---------GRAKKAVEIYHRVIT  273 (519)
Q Consensus       206 ~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~  273 (519)
                      ++..|......+   ....|+.+|.+++...     +-+|..+.++..++.++...         .+..+|....++|++
T Consensus       258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve  332 (458)
T PRK11906        258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD  332 (458)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence            355555554443   4567788888887431     23577788888888887654         234566777777777


Q ss_pred             HHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 010063          274 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYK  353 (519)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  353 (519)
                      +        ++..+.++..+|.+....++++.|...|++|+.+        +|+.+.+++..|.+....|+.++|.+.++
T Consensus       333 l--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~  396 (458)
T PRK11906        333 I--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICID  396 (458)
T ss_pred             c--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            6        5666889999999999999999999999999985        68888999999999999999999999999


Q ss_pred             HHHHHHHhhccCCCCchHHHHHHHHHHH-HHHHcCChHHHHHHHHH
Q 010063          354 KALRVIKDSNYMSLDDSIMENMRIDLAE-LLHIVGRGQEGRELLEE  398 (519)
Q Consensus       354 ~al~~~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~  398 (519)
                      +++++       +|..  .......+-. .|. ....++|+.+|-+
T Consensus       397 ~alrL-------sP~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~  432 (458)
T PRK11906        397 KSLQL-------EPRR--RKAVVIKECVDMYV-PNPLKNNIKLYYK  432 (458)
T ss_pred             HHhcc-------Cchh--hHHHHHHHHHHHHc-CCchhhhHHHHhh
Confidence            99987       2222  1212222222 333 3456777776644

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.13  E-value=0.0023  Score=51.25  Aligned_cols=139  Identities=19%  Similarity=0.237  Sum_probs=105.8

Q ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (519)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (519)
                      |.... .+.||......|++.+|...|++++.-.   +..+    ...+..++......+++..|...+++..+.-.   
T Consensus        87 pTvqn-r~rLa~al~elGr~~EA~~hy~qalsG~---fA~d----~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p---  155 (251)
T COG4700          87 PTVQN-RYRLANALAELGRYHEAVPHYQQALSGI---FAHD----AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP---  155 (251)
T ss_pred             hhHHH-HHHHHHHHHHhhhhhhhHHHHHHHhccc---cCCC----HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC---
Confidence            44444 6789999999999999999999987631   1222    45677899999999999999999998877521   


Q ss_pred             CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010063          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (519)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (519)
                         ..........+|..+...|++.+|+..|+.++..+        |.. ......+..+.++|+.++|..-+....+..
T Consensus       156 ---a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--------pg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~  223 (251)
T COG4700         156 ---AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY--------PGP-QARIYYAEMLAKQGRLREANAQYVAVVDTA  223 (251)
T ss_pred             ---ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--------CCH-HHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence               11233455678999999999999999999999864        221 233446788889999999998887777665


Q ss_pred             Hh
Q 010063          360 KD  361 (519)
Q Consensus       360 ~~  361 (519)
                      .+
T Consensus       224 ~r  225 (251)
T COG4700         224 KR  225 (251)
T ss_pred             Hh
Confidence            54

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.10  E-value=2.2e-05  Score=72.30  Aligned_cols=72  Identities=14%  Similarity=0.160  Sum_probs=64.3

Q ss_pred             CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063          324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (519)
Q Consensus       324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (519)
                      ..|.....++++|..|...|++++|+..|++++++       .|++.....+++++|.+|..+|++++|+..+++++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            35778889999999999999999999999999998       4555544457899999999999999999999999986

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=98.10  E-value=7.4e-06  Score=49.51  Aligned_cols=41  Identities=34%  Similarity=0.520  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 010063          415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS  455 (519)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  455 (519)
                      +.++.++|.+|..+|++++|..++++++.+.++.+|++||+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            46889999999999999999999999999999999999985

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.10  E-value=0.0034  Score=55.34  Aligned_cols=207  Identities=29%  Similarity=0.352  Sum_probs=155.4

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (519)
                      .......+..+...+++..+...+......      ...+.....+...+..+...+++..+...+.+++....      
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  126 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDP------  126 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC------
Confidence            456667888999999999999999988764      12455677888899999999999999999998887421      


Q ss_pred             ChhHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010063          325 DGRVGMAMCSLAH-AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (519)
Q Consensus       325 ~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (519)
                      .+  .......+. ++...|++++|...+.+++..       .+............+..+...+++++|+..+.+++...
T Consensus       127 ~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  197 (291)
T COG0457         127 DP--DLAEALLALGALYELGDYEEALELYEKALEL-------DPELNELAEALLALGALLEALGRYEEALELLEKALKLN  197 (291)
T ss_pred             Cc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC
Confidence            11  122333344 899999999999999999552       11111223444566666888999999999999998864


Q ss_pred             HHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010063          404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  483 (519)
Q Consensus       404 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (519)
                      ...       ....+..++..+...+++++|...+..++...        +........++..+...|.++++...+.++
T Consensus       198 ~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (291)
T COG0457         198 PDD-------DAEALLNLGLLYLKLGKYEEALEYYEKALELD--------PDNAEALYNLALLLLELGRYEEALEALEKA  262 (291)
T ss_pred             ccc-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------cccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence            221       45678889999999999999999999998843        223445667777777778899999999999


Q ss_pred             HHHH
Q 010063          484 LYIR  487 (519)
Q Consensus       484 ~~~~  487 (519)
                      +...
T Consensus       263 ~~~~  266 (291)
T COG0457         263 LELD  266 (291)
T ss_pred             HHhC
Confidence            8765

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.09  E-value=1.9e-05  Score=72.77  Aligned_cols=72  Identities=14%  Similarity=0.087  Sum_probs=63.3

Q ss_pred             CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063          410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (519)
Q Consensus       410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (519)
                      ..|.....++++|.+|...|++++|+..|++++++     .|+++....+++++|.+|..+|++++|+.++++|+++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            46778899999999999999999999999999995     3444433356999999999999999999999999997

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.07  E-value=1.6e-05  Score=54.18  Aligned_cols=55  Identities=18%  Similarity=0.283  Sum_probs=49.2

Q ss_pred             HHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhh
Q 010063          128 MIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV  192 (519)
Q Consensus       128 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  192 (519)
                      ++..|++++|+..++++++.          .|....++..+|.+|...|++++|...++++....
T Consensus         1 ll~~~~~~~A~~~~~~~l~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~   55 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQR----------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD   55 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHH----------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred             ChhccCHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            36789999999999999998          88889999999999999999999999999887664

...

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.03  E-value=0.016  Score=56.35  Aligned_cols=178  Identities=18%  Similarity=0.090  Sum_probs=123.0

Q ss_pred             HHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH---HHHHHHHHHHH----hCCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063          254 VLGSIGRAKKAVEIYHRVITILELNRGTESADLV---LPLFSLGSLFI----KEGKAVDAESVFSRILKIYTKVYGENDG  326 (519)
Q Consensus       254 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~  326 (519)
                      +..-.|+-+.++..+.++.+. ..+   ..|...   ..|+.....+.    .....+.|.+.+....+.        .|
T Consensus       197 ~vGF~gdR~~GL~~L~~~~~~-~~i---~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------yP  264 (468)
T PF10300_consen  197 FVGFSGDRELGLRLLWEASKS-ENI---RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------YP  264 (468)
T ss_pred             hcCcCCcHHHHHHHHHHHhcc-CCc---chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------CC
Confidence            333468999999999887652 111   112111   11222222222    234556677776666653        46


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 010063          327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  406 (519)
Q Consensus       327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  406 (519)
                      .....+...|.++...|+.++|++.+++++....+.      .....-++..++.++..+++|++|..++.+..+.    
T Consensus       265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~------~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~----  334 (468)
T PF10300_consen  265 NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW------KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE----  334 (468)
T ss_pred             CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH------HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc----
Confidence            666778889999999999999999999988543321      2233456789999999999999999999987763    


Q ss_pred             hCCCChhHHHHHHHHHHHHHhccCH-------HHHHHHHHHHHHHHHHhcCCCCcch
Q 010063          407 KGKEHPSFVTHLLNLAASYSRSKNF-------VEAERLLRICLDIMTKTVGPDDQSI  456 (519)
Q Consensus       407 ~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~~  456 (519)
                         +....+...+..|.++...|+.       ++|.+++.++-....+..|...|..
T Consensus       335 ---s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E  388 (468)
T PF10300_consen  335 ---SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLE  388 (468)
T ss_pred             ---cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChH
Confidence               3344556667789999999999       8999999999888887666555533

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.02  E-value=8.3e-05  Score=59.84  Aligned_cols=105  Identities=14%  Similarity=0.172  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhc
Q 010063          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (519)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (519)
                      .....+-..+..++..|+|++|..-|..||+++....     ......+|.+.|.+.+.++.++.|+.-..+++++.   
T Consensus        93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~-----~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~---  164 (271)
T KOG4234|consen   93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS-----TEERSILYSNRAAALIKLRKWESAIEDCSKAIELN---  164 (271)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc-----HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC---
Confidence            3445577788899999999999999999999965433     45667788899999999999999999999999876   


Q ss_pred             CCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (519)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (519)
                          |....++...+.+|.....|++|+.-|.+.++.
T Consensus       165 ----pty~kAl~RRAeayek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  165 ----PTYEKALERRAEAYEKMEKYEEALEDYKKILES  197 (271)
T ss_pred             ----chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence                666777888899999999999999999998875

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.98  E-value=3.4e-05  Score=52.55  Aligned_cols=53  Identities=23%  Similarity=0.354  Sum_probs=47.2

Q ss_pred             hhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063          256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (519)
Q Consensus       256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (519)
                      ...|++++|+..|++++..        .|....++..+|.+|...|++++|...+++++..
T Consensus         2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5689999999999999987        5777889999999999999999999999998874

...

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=0.0088  Score=51.41  Aligned_cols=230  Identities=10%  Similarity=0.108  Sum_probs=154.4

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchH
Q 010063          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL  201 (519)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  201 (519)
                      ++.+....+..++++|+..|.+.+..-...  ......+.-.+...++..|...|++..-.+......+....+  ..|.
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~--dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~f--tk~k   82 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSK--DEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDF--TKPK   82 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCCh--hhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHh--cchh
Confidence            456777788999999999999887641000  001123345577899999999999988776665554444332  2244


Q ss_pred             HHHHHHHHHHHH-HccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063          202 LDAILLHMGSMY-STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (519)
Q Consensus       202 ~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (519)
                      ...+...+-.-+ .....++.-+......++...+..  ..-.....-..+...++..|.|.+|+......+.-.++.. 
T Consensus        83 ~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEk--r~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D-  159 (421)
T COG5159          83 ITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREK--RKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD-  159 (421)
T ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc-
Confidence            444444444433 334567777777777777654421  1112223345678899999999999999999988887764 


Q ss_pred             CCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010063          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV-GMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (519)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (519)
                       +.+....++..-..+|....+..++...+..|.......+-  +|.. +..-..-|...+...+|.-|-.+|-++++-+
T Consensus       160 -DK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YC--Ppqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf  236 (421)
T COG5159         160 -DKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYC--PPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF  236 (421)
T ss_pred             -CccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCC--CHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence             45666777777788899999999988888877776655542  2332 2222223566777889999999999999876


Q ss_pred             Hh
Q 010063          360 KD  361 (519)
Q Consensus       360 ~~  361 (519)
                      ..
T Consensus       237 t~  238 (421)
T COG5159         237 TL  238 (421)
T ss_pred             cc
Confidence            53

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.97  E-value=0.00018  Score=57.95  Aligned_cols=100  Identities=18%  Similarity=0.138  Sum_probs=87.0

Q ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (519)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (519)
                      +-.-|+-++..|+|.+|..-|..|+.++...   ........+.+.|.+...++.++.|+.-..+++++        .|.
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~---~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------~pt  166 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPST---STEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------NPT  166 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccc---cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------Cch
Confidence            5556888899999999999999999997553   22355677889999999999999999999999998        566


Q ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (519)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (519)
                      ...++...+.+|..+.+|++|+.-|.+.++.
T Consensus       167 y~kAl~RRAeayek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  167 YEKALERRAEAYEKMEKYEEALEDYKKILES  197 (271)
T ss_pred             hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            7788888899999999999999999999885

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.89  E-value=0.0033  Score=46.07  Aligned_cols=122  Identities=16%  Similarity=0.190  Sum_probs=87.6

Q ss_pred             HHHHHHHHH--HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063          287 VLPLFSLGS--LFIKEGKAVDAESVFSRILKIYTKVYGENDG----RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (519)
Q Consensus       287 ~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (519)
                      +.+|..|+.  -...-|-|++|...+++++++.+.+.....-    -.+.++..|+..+..+|+|++++...++++..+.
T Consensus         7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN   86 (144)
T PF12968_consen    7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN   86 (144)
T ss_dssp             HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence            445555543  3455689999999999999998766332211    1556788899999999999999999999999998


Q ss_pred             hhccCCCCch-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 010063          361 DSNYMSLDDS-IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  408 (519)
Q Consensus       361 ~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  408 (519)
                      +...+..+.. .+..+.++.+..+...|+.++|+..|+.+-++..+..|
T Consensus        87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG  135 (144)
T PF12968_consen   87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG  135 (144)
T ss_dssp             HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred             hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence            8755555532 33445578899999999999999999999888766544

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=0.016  Score=51.11  Aligned_cols=300  Identities=11%  Similarity=0.097  Sum_probs=188.6

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI----EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (519)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (519)
                      +..+.......++++++..+...+.....    ...++    ..-.+...+|..|...|+.++-..............+ 
T Consensus         8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~----~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~-   82 (411)
T KOG1463|consen    8 LERAQNLVSVNQVEEAINILKSVLNKAQG----ASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS-   82 (411)
T ss_pred             HHHHHHhcccchhhhhHHHHHHHhhhhcc----ccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh-
Confidence            45566666777788888888887764211    11122    2234678899999999999988887777666554322 


Q ss_pred             CchHHHHHHHHHHHHHHc-cccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010063          198 DEPLLDAILLHMGSMYST-LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (519)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (519)
                       .+..+.....+-..+.. .+..+.-+.+...+++...+..  ..-..-..-..+...|...++|.+|+......+.-.+
T Consensus        83 -KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ek--RtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElK  159 (411)
T KOG1463|consen   83 -KAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREK--RTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELK  159 (411)
T ss_pred             -hHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence             23334444444444333 3455666777777777654420  1111223345678899999999999999999998888


Q ss_pred             HhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHH-HHHHHHHHHHHHCCCHHHHHHHHHHH
Q 010063          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG-MAMCSLAHAKCANGNAEEAVELYKKA  355 (519)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a  355 (519)
                      +..  +.+....++..-..+|....+..+|...+..|-......+  -+|... ..-..-|.++....+|.-|..||-+|
T Consensus       160 KlD--DK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiY--cpPqlQa~lDLqSGIlha~ekDykTafSYFyEA  235 (411)
T KOG1463|consen  160 KLD--DKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIY--CPPQLQATLDLQSGILHAAEKDYKTAFSYFYEA  235 (411)
T ss_pred             hcc--cccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccc--cCHHHHHHHHHhccceeecccccchHHHHHHHH
Confidence            765  4455566666677888899999999988888776655544  234322 22233366677778999999999999


Q ss_pred             HHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh--ccCHHH
Q 010063          356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR--SKNFVE  433 (519)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~  433 (519)
                      .+-+...    .++.....++-.+-.+-...+..++--.++.-=..+.  .   .. ....++..++..+..  +.+|+.
T Consensus       236 fEgf~s~----~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~--y---~g-~~i~AmkavAeA~~nRSLkdF~~  305 (411)
T KOG1463|consen  236 FEGFDSL----DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK--Y---AG-RDIDAMKAVAEAFGNRSLKDFEK  305 (411)
T ss_pred             Hcccccc----CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh--c---cC-cchHHHHHHHHHhcCCcHHHHHH
Confidence            9887642    3334444455555555566677666555443222211  1   11 223566667777654  356777


Q ss_pred             HHHHHHHHHH
Q 010063          434 AERLLRICLD  443 (519)
Q Consensus       434 A~~~~~~al~  443 (519)
                      |+.-|+.-+.
T Consensus       306 AL~~yk~eL~  315 (411)
T KOG1463|consen  306 ALADYKKELA  315 (411)
T ss_pred             HHHHhHHHHh
Confidence            7766665443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.87  E-value=0.00014  Score=50.23  Aligned_cols=58  Identities=24%  Similarity=0.282  Sum_probs=52.6

Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          293 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       293 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      |..+|...+++++|+..+++++.+        +|.....+...|.++...|++++|...++++++.
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            356889999999999999999986        5667778999999999999999999999999987

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.86  E-value=0.026  Score=53.19  Aligned_cols=265  Identities=15%  Similarity=0.120  Sum_probs=144.6

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHH-HHHH
Q 010063          169 ALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSIL-LVTS  247 (519)
Q Consensus       169 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~  247 (519)
                      +.+...+|+|+.-.......       ..+.+   .....-+......|+++++..+.+++.............. ....
T Consensus         5 ~eaaWrl~~Wd~l~~~~~~~-------~~~~~---~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~   74 (352)
T PF02259_consen    5 AEAAWRLGDWDLLEEYLSQS-------NEDSP---EYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRA   74 (352)
T ss_pred             HHHHHhcCChhhHHHHHhhc-------cCCCh---hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            45667889998844443332       12222   1223333344488999999999998887654432221111 1111


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHhcC--CC
Q 010063          248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFI-KEGKAVDAESVFSRILKIYTKVYG--EN  324 (519)
Q Consensus       248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~--~~  324 (519)
                      +..+. .+....+.+++..+......         .+   .....+-.... +...........+..+.+....+.  ..
T Consensus        75 y~~l~-~lq~L~Elee~~~~~~~~~~---------~~---~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~  141 (352)
T PF02259_consen   75 YPSLV-KLQQLVELEEIIELKSNLSQ---------NP---QDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILL  141 (352)
T ss_pred             HHHHH-HHhHHHHHHHHHHHHHhhcc---------cH---HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccc
Confidence            11111 11222333333333211100         00   00011111110 111112223333334433333321  12


Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HH
Q 010063          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL-IT  403 (519)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~  403 (519)
                      ....+..+..++.+..+.|+++-|...+.++.......   ...   ...+....+.++...|+..+|+..++..+. ..
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~---~~~---~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~  215 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSS---ESL---LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL  215 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcc---cCC---CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            34567789999999999999999999999877653211   111   223446679999999999999999988887 22


Q ss_pred             HHh-------------------------hCCCChhHHHHHHHHHHHHHhc------cCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          404 EKY-------------------------KGKEHPSFVTHLLNLAASYSRS------KNFVEAERLLRICLDIMTKTVGPD  452 (519)
Q Consensus       404 ~~~-------------------------~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~  452 (519)
                      ...                         ........+.++..+|......      +..+++...|+++..+        
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--------  287 (352)
T PF02259_consen  216 SKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--------  287 (352)
T ss_pred             hhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------
Confidence            221                         0111234456777777777777      7888899999998875        


Q ss_pred             CcchhHHHHHHHHHHHhc
Q 010063          453 DQSISFPMLHLGITLYHL  470 (519)
Q Consensus       453 ~~~~~~~~~~la~~~~~~  470 (519)
                      +|....++..+|..+...
T Consensus       288 ~~~~~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  288 DPSWEKAWHSWALFNDKL  305 (352)
T ss_pred             ChhHHHHHHHHHHHHHHH
Confidence            344555677777766543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=0.017  Score=51.02  Aligned_cols=260  Identities=12%  Similarity=0.066  Sum_probs=162.8

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhhhhhcCC
Q 010063          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYV-YIGDLKFVQSLLDMMSGIVDSLKD  197 (519)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~  197 (519)
                      +.+++.+..+...|++.+-..+.+..-..+....     .+..+.....+-.... ..+..+.-+.++..++++...- .
T Consensus        49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~-----KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e-k  122 (411)
T KOG1463|consen   49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSVS-----KAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE-K  122 (411)
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH-h
Confidence            4478888999999999988888777665544432     3444444444444433 3445566777778877776541 1


Q ss_pred             CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010063          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (519)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (519)
                      ........-..+...|...++|.+|+......+...++.  .|.+.+..++..-..+|+...+..+|...+..|......
T Consensus       123 RtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~Ana  200 (411)
T KOG1463|consen  123 RTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANA  200 (411)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcc
Confidence            112223334578899999999999999999998888776  344556667777788999999999999998888776655


Q ss_pred             hcCCCChhhH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010063          278 NRGTESADLV-LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  356 (519)
Q Consensus       278 ~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  356 (519)
                      .+-  +|... ..-..-|.++....+|..|..||-+|.+-+....  +++....++-.+-.+-...+..++--..+..=.
T Consensus       201 iYc--pPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~--~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~  276 (411)
T KOG1463|consen  201 IYC--PPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLD--DDVKALTSLKYMLLCKIMLNLPDDVAALLSAKL  276 (411)
T ss_pred             ccc--CHHHHHHHHHhccceeecccccchHHHHHHHHHccccccC--CcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHH
Confidence            542  33322 2223346667777899999999999999776542  233444444444444445566666544443222


Q ss_pred             HHHHhhccCCCCchHHHHHHHHHHHHHHH--cCChHHHHHHHHH
Q 010063          357 RVIKDSNYMSLDDSIMENMRIDLAELLHI--VGRGQEGRELLEE  398 (519)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~  398 (519)
                      .+.    +.+++    ..+...++..+.+  ..+|+.|+.-|..
T Consensus       277 ~l~----y~g~~----i~AmkavAeA~~nRSLkdF~~AL~~yk~  312 (411)
T KOG1463|consen  277 ALK----YAGRD----IDAMKAVAEAFGNRSLKDFEKALADYKK  312 (411)
T ss_pred             HHh----ccCcc----hHHHHHHHHHhcCCcHHHHHHHHHHhHH
Confidence            221    11222    2333556666543  2345555554443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.84  E-value=0.00016  Score=50.05  Aligned_cols=57  Identities=14%  Similarity=0.190  Sum_probs=52.6

Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063          252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (519)
Q Consensus       252 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (519)
                      ..+|...+++++|++++++++.+        +|.....+...|.++...|++++|...++++++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            56889999999999999999997        5667889999999999999999999999999986

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.81  E-value=0.02  Score=50.25  Aligned_cols=229  Identities=22%  Similarity=0.290  Sum_probs=159.7

Q ss_pred             cCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010063          175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV  254 (519)
Q Consensus       175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  254 (519)
                      .+.+..+...+.........     ..........+..+...+++..+...+......      ...+.....+...+..
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  104 (291)
T COG0457          36 LGELAEALELLEEALELLPN-----SDLAGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLL  104 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCcc-----ccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHH
Confidence            34455555555554433211     012334677888888999999999988887764      1234446677788888


Q ss_pred             HhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 010063          255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS-LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMC  333 (519)
Q Consensus       255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  333 (519)
                      +...+++.++...+.+++...        +.........+. ++...|++++|...+.+++...     +..........
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~  171 (291)
T COG0457         105 LEALGKYEEALELLEKALALD--------PDPDLAEALLALGALYELGDYEEALELYEKALELD-----PELNELAEALL  171 (291)
T ss_pred             HHHHhhHHHHHHHHHHHHcCC--------CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHHH
Confidence            999999999999988887652        111222333344 8899999999999999995521     10123445566


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh
Q 010063          334 SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS  413 (519)
Q Consensus       334 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  413 (519)
                      ..+..+...+++++|+..+.+++.....       .  ....+..++..+...+++++|...+..++....        .
T Consensus       172 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--------~  234 (291)
T COG0457         172 ALGALLEALGRYEEALELLEKALKLNPD-------D--DAEALLNLGLLYLKLGKYEEALEYYEKALELDP--------D  234 (291)
T ss_pred             HhhhHHHHhcCHHHHHHHHHHHHhhCcc-------c--chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc--------c
Confidence            6666688899999999999999887432       0  234567889999999999999999999887532        2


Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063          414 FVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (519)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (519)
                      .......++..+...+.++++...+.+++..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         235 NAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3345566677777777899999999988874

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.76  E-value=0.025  Score=49.91  Aligned_cols=165  Identities=11%  Similarity=-0.057  Sum_probs=123.8

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010063          169 ALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSL  248 (519)
Q Consensus       169 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  248 (519)
                      +.+....|++.+|-...++.++-.       |.-..++..--..++..|+.......+++.+...    .++.|-...+.
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~-------PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sYv~  178 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDY-------PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSYVH  178 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhC-------chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHHHH
Confidence            444567788888887787776543       4444445556667888899988888888876543    34566667777


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 010063          249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV  328 (519)
Q Consensus       249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  328 (519)
                      ..++..+...|-|++|++..++++++        ++....+...++.++...|++.++.++..+.-...+..    ....
T Consensus       179 GmyaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~mla  246 (491)
T KOG2610|consen  179 GMYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----WMLA  246 (491)
T ss_pred             HHHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh----hHHH
Confidence            78899999999999999999999987        45567788889999999999999999988776544321    2223


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010063          329 GMAMCSLAHAKCANGNAEEAVELYKKAL  356 (519)
Q Consensus       329 ~~~~~~la~~~~~~g~~~~A~~~~~~al  356 (519)
                      ...|-..|..+...+.|+.|++.|+.-+
T Consensus       247 sHNyWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  247 SHNYWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             hhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence            3445567888888899999999998744

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.75  E-value=0.0081  Score=44.10  Aligned_cols=117  Identities=15%  Similarity=0.091  Sum_probs=85.0

Q ss_pred             HHHHHHHHHH--HhhcCCHHHHHHHHHHHHHHHHHhcCCCCh----hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 010063          245 VTSLLGMAKV--LGSIGRAKKAVEIYHRVITILELNRGTESA----DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT  318 (519)
Q Consensus       245 ~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  318 (519)
                      +.+|..|+..  ...-|-|++|...+++++++.+.+......    ..+.++..|+..+..+|+|++++....+++..+.
T Consensus         7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN   86 (144)
T PF12968_consen    7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN   86 (144)
T ss_dssp             HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence            4445444443  455689999999999999998776543221    2356788899999999999999999999999887


Q ss_pred             HhcCCCChh----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063          319 KVYGENDGR----VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (519)
Q Consensus       319 ~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (519)
                      +.. +-+.+    ...+..+.+..+...|+.++|+..|+.+-++..+.
T Consensus        87 RRG-EL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER  133 (144)
T PF12968_consen   87 RRG-ELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAER  133 (144)
T ss_dssp             HH---TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred             hcc-ccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            653 22322    44456778889999999999999999999887764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.75  E-value=0.026  Score=49.81  Aligned_cols=170  Identities=11%  Similarity=0.021  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCc
Q 010063          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (519)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (519)
                      .+...+..++..|++.+|....++.++-          .|....++...-.+++..|+...-...+++.+..   ..++.
T Consensus       105 k~h~~aai~~~~g~~h~a~~~wdklL~d----------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~---wn~dl  171 (491)
T KOG2610|consen  105 KRHAKAAILWGRGKHHEAAIEWDKLLDD----------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK---WNADL  171 (491)
T ss_pred             hhhhhHHHhhccccccHHHHHHHHHHHh----------CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc---cCCCC
Confidence            3555666778889999988888888776          6666667777777888899988888888776543   25666


Q ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (519)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (519)
                      |-...+.-.++..+...|-|++|.+...+++++.        +.-..+...++.++...|++.++.+...+.-...+.  
T Consensus       172 p~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN--------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~--  241 (491)
T KOG2610|consen  172 PCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN--------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ--  241 (491)
T ss_pred             cHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC--------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh--
Confidence            7777777788889999999999999999999873        223667778899999999999999998876554432  


Q ss_pred             CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010063          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL  314 (519)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  314 (519)
                        ..-....-|...+..+.+.+.|+.|+..|.+-+
T Consensus       242 --s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  242 --SWMLASHNYWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             --hhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence              112223345567888888999999999998644

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.75  E-value=0.027  Score=51.77  Aligned_cols=204  Identities=16%  Similarity=0.207  Sum_probs=122.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHH
Q 010063          134 KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMY  213 (519)
Q Consensus       134 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  213 (519)
                      +..+.+...+.+...+..++  ......+.+...+-..|....+|+.-+++.+....+-.-   +.+....+....|.++
T Consensus       115 ~~g~~~~l~~~L~~i~~rLd--~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~---~~~~~~~i~~~yafAL  189 (374)
T PF13281_consen  115 YSGARKELAKELRRIRQRLD--DPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTC---DVANQHNIKFQYAFAL  189 (374)
T ss_pred             HhhHHHHHHHHHHHHHHhhC--CHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCcc---chhcchHHHHHHHHHH
Confidence            34445555666666665542  222334556667777899999999999988887665211   1122333456677777


Q ss_pred             Hc---cccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc---------CCHHHHHHHHHHHHHHHHHhcCC
Q 010063          214 ST---LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---------GRAKKAVEIYHRVITILELNRGT  281 (519)
Q Consensus       214 ~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~  281 (519)
                      .+   .|+.++|+..+..++...       ......++..+|.+|-..         ...++|+..|.++.++       
T Consensus       190 nRrn~~gdre~Al~il~~~l~~~-------~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~-------  255 (374)
T PF13281_consen  190 NRRNKPGDREKALQILLPVLESD-------ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI-------  255 (374)
T ss_pred             hhcccCCCHHHHHHHHHHHHhcc-------CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC-------
Confidence            77   899999999998875432       122244566667776432         2456677777776665       


Q ss_pred             CChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC----CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010063          282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG----ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  357 (519)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  357 (519)
                      + ++ ...-.|++.++...|...+...-.++.........+    ......-+.+..++.+..-.|++++|.+.++++.+
T Consensus       256 ~-~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~  333 (374)
T PF13281_consen  256 E-PD-YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK  333 (374)
T ss_pred             C-cc-ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence            2 22 233346666677677644444333333311111111    11223344556677888889999999999999987


Q ss_pred             H
Q 010063          358 V  358 (519)
Q Consensus       358 ~  358 (519)
                      .
T Consensus       334 l  334 (374)
T PF13281_consen  334 L  334 (374)
T ss_pred             c
Confidence            6

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.74  E-value=0.014  Score=54.60  Aligned_cols=126  Identities=17%  Similarity=0.164  Sum_probs=93.4

Q ss_pred             hhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCh---------
Q 010063          256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG---------  326 (519)
Q Consensus       256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---------  326 (519)
                      .+..+...-++..++|+++        +|+.+.+|..|+.-  ......+|+.+++++++..+..++.+..         
T Consensus       179 WRERnp~aRIkaA~eALei--------~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e  248 (539)
T PF04184_consen  179 WRERNPQARIKAAKEALEI--------NPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWE  248 (539)
T ss_pred             HhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhh
Confidence            4456677777888888887        46667777766642  2344789999999999887766544310         


Q ss_pred             --------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010063          327 --------RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  398 (519)
Q Consensus       327 --------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  398 (519)
                              ....+...+|.+..+.|+.+||++.+++.++..       + ......++.+|..++...+.|.++..++.+
T Consensus       249 ~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~-------p-~~~~l~IrenLie~LLelq~Yad~q~lL~k  320 (539)
T PF04184_consen  249 AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF-------P-NLDNLNIRENLIEALLELQAYADVQALLAK  320 (539)
T ss_pred             hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-------C-ccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence                    123455678999999999999999999988752       1 222345779999999999999999988877


Q ss_pred             H
Q 010063          399 C  399 (519)
Q Consensus       399 a  399 (519)
                      -
T Consensus       321 Y  321 (539)
T PF04184_consen  321 Y  321 (539)
T ss_pred             h
Confidence            3

The molecular function of this protein is uncertain.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.68  E-value=0.00046  Score=60.54  Aligned_cols=97  Identities=12%  Similarity=0.026  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC
Q 010063          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (519)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (519)
                      .++-+.+..|+++|.|++|+++|.+++..          .|..+..+.+.+.+|+....|..|+.-.+.++.+.      
T Consensus        98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~----------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd------  161 (536)
T KOG4648|consen   98 SEIKERGNTYFKQGKYEEAIDCYSTAIAV----------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD------  161 (536)
T ss_pred             HHHHHhhhhhhhccchhHHHHHhhhhhcc----------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh------
Confidence            33667889999999999999999999988          77778889999999999999999999999988775      


Q ss_pred             chHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (519)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (519)
                       .....+|...|..-...|+..+|.+-++.++++
T Consensus       162 -~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L  194 (536)
T KOG4648|consen  162 -KLYVKAYSRRMQARESLGNNMEAKKDCETVLAL  194 (536)
T ss_pred             -HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence             455667888899999999999999999999886

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.67  E-value=0.023  Score=53.20  Aligned_cols=128  Identities=15%  Similarity=0.048  Sum_probs=92.6

Q ss_pred             HHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC--------
Q 010063          212 MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES--------  283 (519)
Q Consensus       212 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------  283 (519)
                      -.++..+...-++...+|+++.        |+.+.+|..||.  .......+|+.+++++++..+...+.+.        
T Consensus       177 ~AWRERnp~aRIkaA~eALei~--------pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~  246 (539)
T PF04184_consen  177 KAWRERNPQARIKAAKEALEIN--------PDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHF  246 (539)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhh--------hhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccch
Confidence            3355667788888888888874        444555555543  1234578888999998888776554321        


Q ss_pred             ---------hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 010063          284 ---------ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK  354 (519)
Q Consensus       284 ---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  354 (519)
                               .....+...+|.+..+.|+.++|++.++..++..      ...+...+..+|...+...+.|.++..++.+
T Consensus       247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~------p~~~~l~IrenLie~LLelq~Yad~q~lL~k  320 (539)
T PF04184_consen  247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF------PNLDNLNIRENLIEALLELQAYADVQALLAK  320 (539)
T ss_pred             hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC------CccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence                     1123455779999999999999999999998742      1223566889999999999999999988877


Q ss_pred             H
Q 010063          355 A  355 (519)
Q Consensus       355 a  355 (519)
                      -
T Consensus       321 Y  321 (539)
T PF04184_consen  321 Y  321 (539)
T ss_pred             h
Confidence            4

The molecular function of this protein is uncertain.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.65  E-value=0.046  Score=53.19  Aligned_cols=129  Identities=9%  Similarity=0.048  Sum_probs=69.3

Q ss_pred             ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhh-----hhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGI-----VDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (519)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (519)
                      +..++..|..++......-+++-|+..|-+....     .++++.-+..    -...+.+-..-|++++|.+.|..+-. 
T Consensus       688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~----~~q~aei~~~~g~feeaek~yld~dr-  762 (1189)
T KOG2041|consen  688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSK----EQQRAEISAFYGEFEEAEKLYLDADR-  762 (1189)
T ss_pred             cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhH----HHHhHhHhhhhcchhHhhhhhhccch-
Confidence            3345677888888888887888888887665332     1111111110    12234444556888888888765422 


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc-CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHH
Q 010063          233 LESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR-GTESADLVLPLFSLGSLFIKEGKAVDAESVFS  311 (519)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  311 (519)
                               .+++      ...+...|+|-.-.++++       ... +.++...-.++.++|..+..+..|++|.++|.
T Consensus       763 ---------rDLA------ielr~klgDwfrV~qL~r-------~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~  820 (1189)
T KOG2041|consen  763 ---------RDLA------IELRKKLGDWFRVYQLIR-------NGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS  820 (1189)
T ss_pred             ---------hhhh------HHHHHhhhhHHHHHHHHH-------ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     1111      123334454443333222       211 12333445566677777777777777777766


Q ss_pred             HH
Q 010063          312 RI  313 (519)
Q Consensus       312 ~a  313 (519)
                      ..
T Consensus       821 ~~  822 (1189)
T KOG2041|consen  821 YC  822 (1189)
T ss_pred             hc
Confidence            54

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.63  E-value=0.0011  Score=56.34  Aligned_cols=100  Identities=15%  Similarity=0.162  Sum_probs=80.0

Q ss_pred             cCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC-----CHHHHHHHH
Q 010063          175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT-----SILLVTSLL  249 (519)
Q Consensus       175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~~  249 (519)
                      ...+++|+..|..++-.....+.++...+.++..+|++|...|+.+....++++|++.+.+.+...     .......++
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            445667777777776666655666677888899999999999999888889999988877664332     224567888


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHH
Q 010063          250 GMAKVLGSIGRAKKAVEIYHRVITI  274 (519)
Q Consensus       250 ~la~~~~~~g~~~~A~~~~~~al~~  274 (519)
                      .+|.++...|++++|..++.+++..
T Consensus       170 LigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  170 LIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            9999999999999999999999864

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=0.01  Score=50.98  Aligned_cols=227  Identities=14%  Similarity=0.125  Sum_probs=148.7

Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 010063          250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  329 (519)
Q Consensus       250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  329 (519)
                      .+|.-....+++++|+..|.+.+.---..........-.+..+++.+|...|++..-.+......+.....   ..|...
T Consensus         8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~f---tk~k~~   84 (421)
T COG5159           8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDF---TKPKIT   84 (421)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHh---cchhHH
Confidence            45666677889999999998887541000000112234567789999999999887766666555554443   234444


Q ss_pred             HHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 010063          330 MAMCSLAHAK-CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  408 (519)
Q Consensus       330 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  408 (519)
                      .....+...+ .....++.-+..+...++...+.    .........-..++.++.+.|+|.+|+......+.-.++.  
T Consensus        85 KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rE----kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~--  158 (421)
T COG5159          85 KIIRTLIEKFPYSSDSLEDQIKVLTALIEWADRE----KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY--  158 (421)
T ss_pred             HHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh--
Confidence            3333333322 33456777888888888776542    1112222334567889999999999999999888877776  


Q ss_pred             CCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHH--HHHHHHHhcCChHHHHHHHHHHHHH
Q 010063          409 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML--HLGITLYHLNRDKEAEKLVLEALYI  486 (519)
Q Consensus       409 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~a~~~  486 (519)
                      ++.+.....+..-..+|....+..++...+..|-......+-   |....+..  .-|..++.-.+|..|..||-++++-
T Consensus       159 DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YC---Ppqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg  235 (421)
T COG5159         159 DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYC---PPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG  235 (421)
T ss_pred             cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCC---CHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence            355666667777788899999999988888877766554432   33222222  2255566778899999999999886


Q ss_pred             HH
Q 010063          487 RE  488 (519)
Q Consensus       487 ~~  488 (519)
                      +.
T Consensus       236 ft  237 (421)
T COG5159         236 FT  237 (421)
T ss_pred             cc
Confidence            53

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.61  E-value=0.003  Score=53.76  Aligned_cols=100  Identities=24%  Similarity=0.222  Sum_probs=81.5

Q ss_pred             HCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC-----ChhHH
Q 010063          341 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE-----HPSFV  415 (519)
Q Consensus       341 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~  415 (519)
                      ....+++|++.|.-|+-...-.   +.++...+.++..+|.+|...|+.+....++++|+..+.+.+...     ..+..
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~---~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~  165 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIK---KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA  165 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence            3457889999998888776543   556667888999999999999998888888888888887665332     22446


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063          416 THLLNLAASYSRSKNFVEAERLLRICLD  443 (519)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (519)
                      ..++.+|.+..+.|++++|..+|.+++.
T Consensus       166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~  193 (214)
T PF09986_consen  166 TLLYLIGELNRRLGNYDEAKRWFSRVIG  193 (214)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence            7888999999999999999999999987

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.60  E-value=0.0033  Score=50.46  Aligned_cols=116  Identities=16%  Similarity=0.192  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCC------------hHHHHHHHHHHHHHHhcCChHHHHHHH
Q 010063          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKG------------IEEVAILDIIALGYVYIGDLKFVQSLL  185 (519)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~  185 (519)
                      +..+...+......|+...++..+++++.+++.-+-.+...            .....++..++..+...|++++|+..+
T Consensus         6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~   85 (146)
T PF03704_consen    6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL   85 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            44456667777788899999999999988766443212111            112345567788888999999999999


Q ss_pred             HHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC
Q 010063          186 DMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT  240 (519)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  240 (519)
                      ++++...       |..-.++..+..+|...|+..+|+..|++......+.+|..
T Consensus        86 ~~~l~~d-------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~  133 (146)
T PF03704_consen   86 QRALALD-------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE  133 (146)
T ss_dssp             HHHHHHS-------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred             HHHHhcC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence            9998875       55556688999999999999999999999988887655544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.60  E-value=0.0097  Score=48.33  Aligned_cols=98  Identities=17%  Similarity=0.093  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 010063          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  410 (519)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  410 (519)
                      +...++..+...|++++|+..++.++..       ..|......+-..||.+...+|++++|...+....         +
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~-------t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---------~  154 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQ-------TKDENLKALAALRLARVQLQQKKADAALKTLDTIK---------E  154 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHcc-------chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------c
Confidence            4556788899999999999999998865       33444555566889999999999999998887532         2


Q ss_pred             ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063          411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (519)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (519)
                      +..........|+++...|+-++|...|++++..
T Consensus       155 ~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         155 ESWAAIVAELRGDILLAKGDKQEARAAYEKALES  188 (207)
T ss_pred             ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence            3334445566799999999999999999999984

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.58  E-value=0.061  Score=53.65  Aligned_cols=281  Identities=13%  Similarity=0.101  Sum_probs=172.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh-----cCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHH
Q 010063          134 KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY-----IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH  208 (519)
Q Consensus       134 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (519)
                      ...|..+++.+-+.            ....+...+|.+|..     ..|.+.|+.+++.+.........  .....+.+.
T Consensus       228 ~~~a~~~~~~~a~~------------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~--~~~~~a~~~  293 (552)
T KOG1550|consen  228 LSEAFKYYREAAKL------------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAAT--KGLPPAQYG  293 (552)
T ss_pred             hhHHHHHHHHHHhh------------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHh--hcCCccccH
Confidence            45677777766543            345566677777754     46899999999987662110000  001224778


Q ss_pred             HHHHHHccc-----cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHhcC
Q 010063          209 MGSMYSTLE-----NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG---RAKKAVEIYHRVITILELNRG  280 (519)
Q Consensus       209 l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~  280 (519)
                      +|.+|....     +...|..+|.++-..       +.   ..+.+.+|.++..-.   ++..|..+|..|...      
T Consensus       294 lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-------g~---~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~------  357 (552)
T KOG1550|consen  294 LGRLYLQGLGVEKIDYEKALKLYTKAAEL-------GN---PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA------  357 (552)
T ss_pred             HHHHHhcCCCCccccHHHHHHHHHHHHhc-------CC---chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc------
Confidence            899988743     678899999888664       11   346677888887765   578999999988754      


Q ss_pred             CCChhhHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Q 010063          281 TESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKA  355 (519)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a  355 (519)
                          ....+...++.+|..    .-+...|..++.++.+.       +++.   +...++..+.. .++++.+...+...
T Consensus       358 ----G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~-------g~~~---A~~~~~~~~~~g~~~~~~~~~~~~~~  423 (552)
T KOG1550|consen  358 ----GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK-------GNPS---AAYLLGAFYEYGVGRYDTALALYLYL  423 (552)
T ss_pred             ----CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc-------cChh---hHHHHHHHHHHccccccHHHHHHHHH
Confidence                235677888888764    34789999999999874       2222   23333333322 27777777666655


Q ss_pred             HHHHHhhccCCCCchHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc---
Q 010063          356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIV----GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS---  428 (519)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---  428 (519)
                      .+...+.      .......+..........    .+...+...+.++..          .....+...+|.+|..-   
T Consensus       424 a~~g~~~------~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~----------~g~~~a~~~lgd~y~~g~g~  487 (552)
T KOG1550|consen  424 AELGYEV------AQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA----------QGNADAILKLGDYYYYGLGT  487 (552)
T ss_pred             HHhhhhH------HhhHHHHHHHhccccccccccccchhHHHHHHHHHHh----------ccCHHHHhhhcceeeecCCC
Confidence            5442221      111111111111111111    133445555544432          22345677888888654   


Q ss_pred             -cCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhc-C--ChHHHHHHHHHHHH
Q 010063          429 -KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL-N--RDKEAEKLVLEALY  485 (519)
Q Consensus       429 -g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g--~~~~A~~~~~~a~~  485 (519)
                       .+++.|...|..+...        .   ....+++|.++..- |  ....|..++.++.+
T Consensus       488 ~~d~~~a~~~y~~a~~~--------~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~  537 (552)
T KOG1550|consen  488 GRDPEKAAAQYARASEQ--------G---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE  537 (552)
T ss_pred             CCChHHHHHHHHHHHHh--------h---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence             4689999999988762        1   67788999988752 1  26788888888765

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.00067  Score=56.45  Aligned_cols=102  Identities=16%  Similarity=0.112  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (519)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (519)
                      ...+-..+..++....|+.|+..|.+++.+          .|..+..+.+.+.++++..+++.+..-..+++++.     
T Consensus        10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~----------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~-----   74 (284)
T KOG4642|consen   10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICI----------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD-----   74 (284)
T ss_pred             HHHHHhccccccchhhhchHHHHHHHHHhc----------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-----
Confidence            344666778888889999999999999988          78888889999999999999999999999999886     


Q ss_pred             CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHh
Q 010063          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR  236 (519)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  236 (519)
                        |.....++.+|........|++|+..++++..+.+..
T Consensus        75 --~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~  111 (284)
T KOG4642|consen   75 --PNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ  111 (284)
T ss_pred             --hHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence              7788889999999999999999999999999887654

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.57  E-value=0.11  Score=52.24  Aligned_cols=235  Identities=14%  Similarity=0.100  Sum_probs=137.5

Q ss_pred             HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHH
Q 010063          126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI  205 (519)
Q Consensus       126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  205 (519)
                      ......+++.+|+....+.+..          +|....+...-|....++|+.++|..+++.....    +.++   ...
T Consensus        17 ~d~ld~~qfkkal~~~~kllkk----------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~----~~~D---~~t   79 (932)
T KOG2053|consen   17 YDLLDSSQFKKALAKLGKLLKK----------HPNALYAKVLKALSLFRLGKGDEALKLLEALYGL----KGTD---DLT   79 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHH----------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC----CCCc---hHH
Confidence            3456788899999988888776          7777778888888999999999999777654332    2222   223


Q ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (519)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (519)
                      +..+-.+|..+|++++|..+|++++...        |. -..+..+-.+|.+.+.|.+-.+.   ++++++...  ..+.
T Consensus        80 Lq~l~~~y~d~~~~d~~~~~Ye~~~~~~--------P~-eell~~lFmayvR~~~yk~qQka---a~~LyK~~p--k~~y  145 (932)
T KOG2053|consen   80 LQFLQNVYRDLGKLDEAVHLYERANQKY--------PS-EELLYHLFMAYVREKSYKKQQKA---ALQLYKNFP--KRAY  145 (932)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhhC--------Cc-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhCC--cccc
Confidence            6678889999999999999999998753        22 34445556677777777654333   333433221  2222


Q ss_pred             hHHHHHHHHHHHHhCCCHHHHHH--HHHHHHHHHHHhcCCC-Ch-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063          286 LVLPLFSLGSLFIKEGKAVDAES--VFSRILKIYTKVYGEN-DG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (519)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~-~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (519)
                        ..|..+..+.......++...  ..--|-.++++..... .. ..+.... .-.++..+|++++|.+.+..-+.-  .
T Consensus       146 --yfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~L-yl~iL~~~~k~~eal~~l~~~la~--~  220 (932)
T KOG2053|consen  146 --YFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIIL-YLLILELQGKYQEALEFLAITLAE--K  220 (932)
T ss_pred             --hHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHH-HHHHHHhcccHHHHHHHHHHHHHH--h
Confidence              233444444444444444433  1111111222221111 11 1222221 224566789999999988543322  1


Q ss_pred             hccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063          362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (519)
Q Consensus       362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (519)
                         ....+..   ..+.....+...+++.+-.++..+.+..
T Consensus       221 ---l~~~~~~---l~~~~~dllk~l~~w~~l~~l~~~Ll~k  255 (932)
T KOG2053|consen  221 ---LTSANLY---LENKKLDLLKLLNRWQELFELSSRLLEK  255 (932)
T ss_pred             ---ccccchH---HHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence               1122221   2234556677778887777766666553

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.57  E-value=0.00058  Score=59.93  Aligned_cols=94  Identities=15%  Similarity=0.111  Sum_probs=83.0

Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 010063          249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV  328 (519)
Q Consensus       249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  328 (519)
                      -..|.-|+.+|.|++|+++|.+++..        .|.....+.+.+..|.+..+|..|+.-+..|+.+-        ...
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y  164 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLY  164 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHH
Confidence            45688999999999999999999986        56667888899999999999999999999999863        345


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          329 GMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      ..+|...+..-..+|...+|.+-++.++++
T Consensus       165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L  194 (536)
T KOG4648|consen  165 VKAYSRRMQARESLGNNMEAKKDCETVLAL  194 (536)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence            678888999999999999999999999987

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.52  E-value=0.0075  Score=48.40  Aligned_cols=110  Identities=13%  Similarity=0.171  Sum_probs=79.5

Q ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCC--------------HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010063          207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS--------------ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI  272 (519)
Q Consensus       207 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  272 (519)
                      ...|......|+...++..+++++.++...+-++.              .....+...++..+...|++++|+..+++++
T Consensus        10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l   89 (146)
T PF03704_consen   10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL   89 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            33455555667788888888888877653322110              1334566778888999999999999999999


Q ss_pred             HHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (519)
                      ..        +|..-..+..+..+|...|+..+|+..|++......+-+|..
T Consensus        90 ~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~  133 (146)
T PF03704_consen   90 AL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE  133 (146)
T ss_dssp             HH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred             hc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence            97        677788899999999999999999999999999888765544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.45  E-value=0.094  Score=48.37  Aligned_cols=205  Identities=13%  Similarity=0.141  Sum_probs=122.8

Q ss_pred             cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 010063          218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF  297 (519)
Q Consensus       218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  297 (519)
                      .+..+.....+.+...+..++........+..++-..|....+|+.-+++.+..-.+    ...+.+....+....|.++
T Consensus       114 ~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yafAL  189 (374)
T PF13281_consen  114 RYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAFAL  189 (374)
T ss_pred             HHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHHHH
Confidence            333344445555554444333222233445566777888888888887777665433    1112233455667788888


Q ss_pred             Hh---CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHHHHhhccC
Q 010063          298 IK---EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA---------NGNAEEAVELYKKALRVIKDSNYM  365 (519)
Q Consensus       298 ~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~~~~~~~  365 (519)
                      .+   .|+.++|+..+..++..       .......++..+|.+|-.         ....++|+..|.++.++-      
T Consensus       190 nRrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~------  256 (374)
T PF13281_consen  190 NRRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE------  256 (374)
T ss_pred             hhcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC------
Confidence            88   89999999999887553       233444567777887743         224567777777776652      


Q ss_pred             CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC----CCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010063          366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG----KEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  441 (519)
Q Consensus       366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (519)
                       ++.    ..-.|++.++...|...+...-.++.........+    .........+..++.+..-.|++++|...++++
T Consensus       257 -~~~----Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~  331 (374)
T PF13281_consen  257 -PDY----YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKA  331 (374)
T ss_pred             -ccc----cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             111    12267788888888755444333333311111111    112222344556777888899999999999999


Q ss_pred             HHH
Q 010063          442 LDI  444 (519)
Q Consensus       442 l~~  444 (519)
                      +..
T Consensus       332 ~~l  334 (374)
T PF13281_consen  332 FKL  334 (374)
T ss_pred             hhc
Confidence            874

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.37  E-value=0.013  Score=48.28  Aligned_cols=111  Identities=19%  Similarity=0.199  Sum_probs=85.5

Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010063          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (519)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (519)
                      ...+..++..+|..|.+.|+.++|.+.|.++.+..       ........+..++.++....|++.....+..++-....
T Consensus        32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-------~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~  104 (177)
T PF10602_consen   32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-------TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE  104 (177)
T ss_pred             hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-------CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence            45677789999999999999999999999987752       33455567778999999999999999999999988776


Q ss_pred             HhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063          405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (519)
Q Consensus       405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (519)
                      ...  +..........-|..+...++|.+|...|-.+...
T Consensus       105 ~~~--d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen  105 KGG--DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             ccc--hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence            531  11122223334566777889999999998877653

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.36  E-value=0.034  Score=45.26  Aligned_cols=104  Identities=13%  Similarity=0.074  Sum_probs=80.0

Q ss_pred             ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (519)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (519)
                      ...-..+...++..+...|++++|+..++.++...    .|......+-.+++.+...+|.+++|+..+....       
T Consensus        85 t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-------  153 (207)
T COG2976          85 TIYAVLAALELAKAEVEANNLDKAEAQLKQALAQT----KDENLKALAALRLARVQLQQKKADAALKTLDTIK-------  153 (207)
T ss_pred             cHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-------
Confidence            33344456678889999999999999999877543    3333444556789999999999999998876532       


Q ss_pred             CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010063          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (519)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (519)
                        ++..........|.++...|+-++|...|+++++.
T Consensus       154 --~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         154 --EESWAAIVAELRGDILLAKGDKQEARAAYEKALES  188 (207)
T ss_pred             --cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence              22334555667899999999999999999999986

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=0.0011  Score=55.16  Aligned_cols=99  Identities=16%  Similarity=0.210  Sum_probs=87.7

Q ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (519)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (519)
                      +..-|..++.-.+|+.|+..|.+++.+        +|..+..+.+-+.+|++..+++.+..-.++++++        .|.
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N   76 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPN   76 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChH
Confidence            555677788888999999999999876        3555677889999999999999999999999998        677


Q ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (519)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (519)
                      .+...+.+|........|++|+..++++..+.+..
T Consensus        77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~  111 (284)
T KOG4642|consen   77 LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ  111 (284)
T ss_pred             HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence            88999999999999999999999999999988765

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.36  E-value=0.11  Score=52.95  Aligned_cols=58  Identities=19%  Similarity=0.113  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (519)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (519)
                      .+|..+|.+....|...+|++.|-++          ++   ...|.....+....|.|++-++++..+.+.
T Consensus      1105 ~vWsqlakAQL~~~~v~dAieSyika----------dD---ps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA----------DD---PSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhc----------CC---cHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            35666777777777777777776655          22   234555566666777777777776666554

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.34  E-value=0.015  Score=48.07  Aligned_cols=111  Identities=16%  Similarity=0.096  Sum_probs=88.1

Q ss_pred             ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (519)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (519)
                      ......++..+|..|...|+.++|++.|.++.+.+.     ........+.++..+....|++.....+..++-..... 
T Consensus        32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-  105 (177)
T PF10602_consen   32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-  105 (177)
T ss_pred             hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-
Confidence            455677889999999999999999999999887532     23456677888999999999999999999999988765 


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063          363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (519)
Q Consensus       363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (519)
                         +.+..........-|..+...++|.+|-..|-.+...
T Consensus       106 ---~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen  106 ---GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             ---cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence               3444444445556677788899999999998877543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.0066  Score=50.95  Aligned_cols=106  Identities=15%  Similarity=0.174  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC---CH-------HHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010063          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT---SI-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVI  272 (519)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al  272 (519)
                      ..++..-|+-++..|+|.+|...|+.|+...+.+.-..   .|       .....+.+++.|+...|+|-+++++....+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            34577889999999999999999999998776653222   22       234467889999999999999999999988


Q ss_pred             HHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063          273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (519)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (519)
                      ..        +|....+|+..|......=+.++|..-+.+++++
T Consensus       258 ~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  258 RH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL  293 (329)
T ss_pred             hc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence            75        6778899999999999999999999999999984

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.32  E-value=0.00066  Score=38.99  Aligned_cols=31  Identities=16%  Similarity=0.089  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010063          459 PMLHLGITLYHLNRDKEAEKLVLEALYIREI  489 (519)
Q Consensus       459 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  489 (519)
                      ++.+||.+|..+|++++|+++|++++.+...
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            4678999999999999999999999987754

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=0.0065  Score=50.99  Aligned_cols=106  Identities=15%  Similarity=0.143  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC---ChhH-------HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063          374 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE---HPSF-------VTHLLNLAASYSRSKNFVEAERLLRICLD  443 (519)
Q Consensus       374 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (519)
                      .++..-|+-++..|+|.+|...|.+|+...+...-..   .|..       ...+.|.+.|+...|+|-++++...+.+.
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~  258 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR  258 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence            4556778889999999999999999998876653322   2222       23577889999999999999999998887


Q ss_pred             HHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                              .+|....+++.-|.++...=+..+|..-+.+++++.
T Consensus       259 --------~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld  294 (329)
T KOG0545|consen  259 --------HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD  294 (329)
T ss_pred             --------cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence                    468889999999999999999999999999999864

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.26  E-value=0.00089  Score=38.44  Aligned_cols=31  Identities=19%  Similarity=0.282  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010063          417 HLLNLAASYSRSKNFVEAERLLRICLDIMTK  447 (519)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  447 (519)
                      ++.+||.+|...|++++|+++|++++.+...
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            4678999999999999999999999977654

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.21  E-value=0.29  Score=49.48  Aligned_cols=191  Identities=15%  Similarity=0.107  Sum_probs=109.4

Q ss_pred             HccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 010063          214 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSL  293 (519)
Q Consensus       214 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  293 (519)
                      ...+++.+|.....+.++.        +|....+...-|.++.++|+.++|..+++..-..        .+..-.++..+
T Consensus        20 ld~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~--------~~~D~~tLq~l   83 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLEALYGL--------KGTDDLTLQFL   83 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC--------CCCchHHHHHH
Confidence            3567888888888877664        3444455556688899999999999665533221        22245677788


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHH
Q 010063          294 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME  373 (519)
Q Consensus       294 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  373 (519)
                      -.+|.++|++++|..+|++++..        .|. -..+..+=..|.+.+.|.+-.+.   ++++++.   .+..+-.. 
T Consensus        84 ~~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQka---a~~LyK~---~pk~~yyf-  147 (932)
T KOG2053|consen   84 QNVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQKA---ALQLYKN---FPKRAYYF-  147 (932)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh---CCcccchH-
Confidence            99999999999999999999874        344 34455555667776666543332   3334333   12222222 


Q ss_pred             HHHHHHHHHHHHcCChHHHHH-----HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 010063          374 NMRIDLAELLHIVGRGQEGRE-----LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  440 (519)
Q Consensus       374 ~~~~~la~~~~~~g~~~~A~~-----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  440 (519)
                        |.-+..+.......++...     +.++..+..-+..| .-...++.. ..-.++..+|++++|.+.+..
T Consensus       148 --WsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g-k~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~  215 (932)
T KOG2053|consen  148 --WSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG-KIESEAEII-LYLLILELQGKYQEALEFLAI  215 (932)
T ss_pred             --HHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC-ccchHHHHH-HHHHHHHhcccHHHHHHHHHH
Confidence              2334444444444444333     11221111111111 111122221 223456778999999988843

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.14  E-value=0.39  Score=49.30  Aligned_cols=187  Identities=15%  Similarity=0.083  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA  284 (519)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  284 (519)
                      +|..+|....+.|...+|++.|-+|          ++|   ..+.....+....|.|++-+.++.-+.+..++.      
T Consensus      1106 vWsqlakAQL~~~~v~dAieSyika----------dDp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~------ 1166 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA----------DDP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREP------ 1166 (1666)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHhc----------CCc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc------
Confidence            4788888888888888888888765          223   245556677778888888888887765543221      


Q ss_pred             hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010063          285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  364 (519)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  364 (519)
                         .+-..|...|.+.++..+-+++.          .|+++   + -....|.-++..|.|+.|.-+|...-        
T Consensus      1167 ---~id~eLi~AyAkt~rl~elE~fi----------~gpN~---A-~i~~vGdrcf~~~~y~aAkl~y~~vS-------- 1221 (1666)
T KOG0985|consen 1167 ---YIDSELIFAYAKTNRLTELEEFI----------AGPNV---A-NIQQVGDRCFEEKMYEAAKLLYSNVS-------- 1221 (1666)
T ss_pred             ---cchHHHHHHHHHhchHHHHHHHh----------cCCCc---h-hHHHHhHHHhhhhhhHHHHHHHHHhh--------
Confidence               11223444555666655544332          12222   2 22345666666777766665554321        


Q ss_pred             CCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--HHH---------------hhCCCChhHHHHHHHHHHHHHh
Q 010063          365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI--TEK---------------YKGKEHPSFVTHLLNLAASYSR  427 (519)
Q Consensus       365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~---------------~~~~~~~~~~~~~~~la~~~~~  427 (519)
                                -+..|+..+...|+|..|....++|-..  +++               +.|-+-.-.++-+-.+...|..
T Consensus      1222 ----------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~ 1291 (1666)
T KOG0985|consen 1222 ----------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQD 1291 (1666)
T ss_pred             ----------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHh
Confidence                      2244666666667777776666655322  111               1111111122334556677888


Q ss_pred             ccCHHHHHHHHHHHHHHH
Q 010063          428 SKNFVEAERLLRICLDIM  445 (519)
Q Consensus       428 ~g~~~~A~~~~~~al~~~  445 (519)
                      .|-+++-+.+++.++.+-
T Consensus      1292 rGyFeElIsl~Ea~LGLE 1309 (1666)
T KOG0985|consen 1292 RGYFEELISLLEAGLGLE 1309 (1666)
T ss_pred             cCcHHHHHHHHHhhhchh
Confidence            888888888877777643

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.11  E-value=0.013  Score=42.67  Aligned_cols=81  Identities=19%  Similarity=0.247  Sum_probs=61.2

Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHH
Q 010063          297 FIKEGKAVDAESVFSRILKIYTKVYGEN-DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM  375 (519)
Q Consensus       297 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  375 (519)
                      ....|++.+|.+.+.+..+......... ......+..++|.++...|++++|+..+++++++.++.    .|......+
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~----~D~~~l~~a   83 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN----GDRRCLAYA   83 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH----CCHHHHHHH
Confidence            3568999999999999999876653222 11355678889999999999999999999999999874    455454444


Q ss_pred             HHHHHH
Q 010063          376 RIDLAE  381 (519)
Q Consensus       376 ~~~la~  381 (519)
                      +..+..
T Consensus        84 l~~~~~   89 (94)
T PF12862_consen   84 LSWLAN   89 (94)
T ss_pred             HHHHHH
Confidence            444443

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.08  E-value=0.0098  Score=43.24  Aligned_cols=66  Identities=18%  Similarity=0.184  Sum_probs=54.1

Q ss_pred             HHHcCChHHHHHHHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Q 010063          383 LHIVGRGQEGRELLEECLLITEKYKGKE-HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  448 (519)
Q Consensus       383 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (519)
                      ..+.|++.+|.+.+.+..+......... ......+..++|.++...|++++|...+++++.+.++.
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~   74 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN   74 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            3578999999999999998876653222 12345678889999999999999999999999999886

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.05  E-value=0.00053  Score=38.66  Aligned_cols=32  Identities=16%  Similarity=0.124  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHH
Q 010063          141 LQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQ  182 (519)
Q Consensus       141 ~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  182 (519)
                      |++++++          .|..+.+++.+|.+|...|++++|+
T Consensus         2 y~kAie~----------~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIEL----------NPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHH----------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            6788888          8999999999999999999999986

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.03  E-value=0.012  Score=51.86  Aligned_cols=105  Identities=10%  Similarity=0.042  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (519)
                      ..+.-+-.-|+-|+...+|..|...|.+++..-    ..+....+..|.+.|.+....|+|..|+.-..+++.+      
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------  148 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------  148 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence            466667788999999999999999999998752    2344466778999999999999999999999999987      


Q ss_pred             CCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (519)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (519)
                        .|....++..=+.++..+.++.+|..+++..+.+.
T Consensus       149 --~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  149 --KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             --CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence              67778899999999999999999999999887764

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.02  E-value=0.0019  Score=39.13  Aligned_cols=42  Identities=36%  Similarity=0.327  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHH
Q 010063          416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI  465 (519)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  465 (519)
                      .++..+|..|...|++++|++.|+++++.        +|+...++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence            36788999999999999999999999984        4566666666664

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.02  E-value=0.0024  Score=38.66  Aligned_cols=42  Identities=17%  Similarity=0.316  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 010063          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  295 (519)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  295 (519)
                      .++..+|.+|...|++++|++.|+++++.        .|+...++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence            35778999999999999999999999997        5666677777764

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.00  E-value=0.0067  Score=48.68  Aligned_cols=92  Identities=10%  Similarity=0.108  Sum_probs=56.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHhhhhhcCCCchHHHHHHHHHH
Q 010063          134 KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDL---KFVQSLLDMMSGIVDSLKDDEPLLDAILLHMG  210 (519)
Q Consensus       134 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  210 (519)
                      ++.|.+.++.....          +|..++.+++.|.++..+.++   .++...++.++.-.+..-.-+|....+++.+|
T Consensus         7 FE~ark~aea~y~~----------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lG   76 (186)
T PF06552_consen    7 FEHARKKAEAAYAK----------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLG   76 (186)
T ss_dssp             HHHHHHHHHHHHHH-----------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHh----------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            35566666666555          788889999999988776554   33555555544433322222367777899999


Q ss_pred             HHHHcccc----HHHHHHHHHHHHHHHHH
Q 010063          211 SMYSTLEN----YEKSMLVYQRVINVLES  235 (519)
Q Consensus       211 ~~~~~~g~----~~~A~~~~~~al~~~~~  235 (519)
                      .+|...+.    ..+|..+|++|...+++
T Consensus        77 nA~ts~A~l~~d~~~A~~~F~kA~~~Fqk  105 (186)
T PF06552_consen   77 NAYTSLAFLTPDTAEAEEYFEKATEYFQK  105 (186)
T ss_dssp             HHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence            99887653    44566666666665543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.96  E-value=0.24  Score=49.50  Aligned_cols=250  Identities=16%  Similarity=0.074  Sum_probs=148.4

Q ss_pred             hHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHc-----cccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010063          178 LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYST-----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA  252 (519)
Q Consensus       178 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  252 (519)
                      ...|..+++.+....         ...+...+|.+|..     ..|.+.|+.+++.+.....+..   +.....+.+.+|
T Consensus       228 ~~~a~~~~~~~a~~g---------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~lg  295 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG---------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQYGLG  295 (552)
T ss_pred             hhHHHHHHHHHHhhc---------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccccHHH
Confidence            456777776654432         12235566666653     4689999999999987311110   001233567889


Q ss_pred             HHHhhcC-----CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHhcCCC
Q 010063          253 KVLGSIG-----RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       253 ~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~  324 (519)
                      .+|....     ++..|..+|.++-+.          ....+.+.+|.++..-.   +...|..+|..|...        
T Consensus       296 ~~Y~~g~~~~~~d~~~A~~~~~~aA~~----------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--------  357 (552)
T KOG1550|consen  296 RLYLQGLGVEKIDYEKALKLYTKAAEL----------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--------  357 (552)
T ss_pred             HHHhcCCCCccccHHHHHHHHHHHHhc----------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--------
Confidence            9988753     678899999988764          23467788898887655   567999999988763        


Q ss_pred             ChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHc-CChHHHHHHHHHH
Q 010063          325 DGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV-GRGQEGRELLEEC  399 (519)
Q Consensus       325 ~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a  399 (519)
                        ....+...++.+|..    .-+...|..++.++.+.       +  ++.   +...++..+.-. ++++.+.-.+...
T Consensus       358 --G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~-------g--~~~---A~~~~~~~~~~g~~~~~~~~~~~~~~  423 (552)
T KOG1550|consen  358 --GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK-------G--NPS---AAYLLGAFYEYGVGRYDTALALYLYL  423 (552)
T ss_pred             --CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc-------c--Chh---hHHHHHHHHHHccccccHHHHHHHHH
Confidence              223466777877754    35788999999998876       1  111   112333333222 7777776666554


Q ss_pred             HHHHHHhhCCCChhHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhc----C
Q 010063          400 LLITEKYKGKEHPSFVTHLLNLAASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL----N  471 (519)
Q Consensus       400 l~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g  471 (519)
                      .+..-+.    ....+..+.........    ..+...+...+.++..          .....+...||.+|+.-    .
T Consensus       424 a~~g~~~----~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~----------~g~~~a~~~lgd~y~~g~g~~~  489 (552)
T KOG1550|consen  424 AELGYEV----AQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA----------QGNADAILKLGDYYYYGLGTGR  489 (552)
T ss_pred             HHhhhhH----HhhHHHHHHHhccccccccccccchhHHHHHHHHHHh----------ccCHHHHhhhcceeeecCCCCC
Confidence            4432221    01111111111111111    1245556666655544          22345667888888764    4


Q ss_pred             ChHHHHHHHHHHHH
Q 010063          472 RDKEAEKLVLEALY  485 (519)
Q Consensus       472 ~~~~A~~~~~~a~~  485 (519)
                      +++.|...|.++..
T Consensus       490 d~~~a~~~y~~a~~  503 (552)
T KOG1550|consen  490 DPEKAAAQYARASE  503 (552)
T ss_pred             ChHHHHHHHHHHHH
Confidence            58899999988865

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.93  E-value=0.0011  Score=37.33  Aligned_cols=32  Identities=19%  Similarity=0.406  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHH
Q 010063          268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE  307 (519)
Q Consensus       268 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  307 (519)
                      |++++++        +|....+++++|.+|...|++++|+
T Consensus         2 y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            6788886        6888999999999999999999986

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.93  E-value=0.0026  Score=35.92  Aligned_cols=29  Identities=21%  Similarity=0.342  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063          416 THLLNLAASYSRSKNFVEAERLLRICLDI  444 (519)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (519)
                      .++.++|.+|..+|++++|+..|++++++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            57899999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.92  E-value=0.48  Score=46.56  Aligned_cols=32  Identities=13%  Similarity=0.333  Sum_probs=21.0

Q ss_pred             CchHHHHHHHHHHHHHHccccHHHHHHHHHHH
Q 010063          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRV  229 (519)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  229 (519)
                      ++.....++.++|..+..+..+++|.++|.+.
T Consensus       791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~  822 (1189)
T KOG2041|consen  791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC  822 (1189)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33445556777777777777777777777653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.90  E-value=0.47  Score=46.16  Aligned_cols=181  Identities=15%  Similarity=0.183  Sum_probs=107.2

Q ss_pred             HHHHHHHccccHHHHHHHHHHH------HHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC
Q 010063          208 HMGSMYSTLENYEKSMLVYQRV------INVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT  281 (519)
Q Consensus       208 ~l~~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  281 (519)
                      .++..+...|++.+|.+.|.+.      ++++.          -.-++..+.-+...|..++-..+.++--+......  
T Consensus       637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyT----------DlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~k--  704 (1081)
T KOG1538|consen  637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYT----------DLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIK--  704 (1081)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHH----------HHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcC--
Confidence            4677888889999999888653      22221          11234556667777777766666665555444332  


Q ss_pred             CChhhHHHHHHHHHHHHhCCCHHHHHHHH------HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 010063          282 ESADLVLPLFSLGSLFIKEGKAVDAESVF------SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA  355 (519)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  355 (519)
                       .|.      .-+.++...|+.++|+...      +-++++.++.    +......+..++..+.....+.-|-+.|.+.
T Consensus       705 -ePk------aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~  773 (1081)
T KOG1538|consen  705 -EPK------AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPGLAAEIFLKM  773 (1081)
T ss_pred             -CcH------HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccchHHHHHHHh
Confidence             222      2356677888888888643      4455555443    2223334555566666666666666666553


Q ss_pred             HHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHhccCHHHH
Q 010063          356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSKNFVEA  434 (519)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A  434 (519)
                      -+.                  ..+..++...+++++|..+.++            +|. ...+++-.|..+.+..++++|
T Consensus       774 gD~------------------ksiVqlHve~~~W~eAFalAe~------------hPe~~~dVy~pyaqwLAE~DrFeEA  823 (1081)
T KOG1538|consen  774 GDL------------------KSLVQLHVETQRWDEAFALAEK------------HPEFKDDVYMPYAQWLAENDRFEEA  823 (1081)
T ss_pred             ccH------------------HHHhhheeecccchHhHhhhhh------------CccccccccchHHHHhhhhhhHHHH
Confidence            222                  2345667778888888776654            222 223555566666677777777


Q ss_pred             HHHHHHH
Q 010063          435 ERLLRIC  441 (519)
Q Consensus       435 ~~~~~~a  441 (519)
                      .+.|.+|
T Consensus       824 qkAfhkA  830 (1081)
T KOG1538|consen  824 QKAFHKA  830 (1081)
T ss_pred             HHHHHHh
Confidence            7666554

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.88  E-value=0.0029  Score=35.71  Aligned_cols=30  Identities=23%  Similarity=0.256  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          458 FPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                      .++.++|.+|..+|++++|+..|++++++.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            578999999999999999999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.78  E-value=0.021  Score=50.40  Aligned_cols=104  Identities=15%  Similarity=0.119  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh
Q 010063          328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK  407 (519)
Q Consensus       328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  407 (519)
                      .+..+-.-|+-|++.++|..|+..|.++++.      ..+++...+..|.|.|.+....|+|..|+.-..+++.+     
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~------kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~-----  148 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKK------KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL-----  148 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh------cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence            6667777899999999999999999999986      24667777889999999999999999999999998874     


Q ss_pred             CCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010063          408 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (519)
Q Consensus       408 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (519)
                         .|....+++.=|.|+..+.++++|..+.++.+.+.
T Consensus       149 ---~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  149 ---KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             ---CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence               56677888888999999999999999988877654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=0.27  Score=43.20  Aligned_cols=131  Identities=19%  Similarity=0.164  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC
Q 010063          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (519)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (519)
                      ...+..+......|++.+|...+..+++.          .++...+...++.+|...|+.+.|...+...-.-..   .+
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~----------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~---~~  201 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQA----------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ---DK  201 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHh----------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch---hh
Confidence            33667778889999999999999999998          666688889999999999999999988876322110   00


Q ss_pred             chHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010063          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (519)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (519)
                      ....   +......+.+.....+....-++. .        .+|.....-+.+|..+...|+.++|.+.+-..+..
T Consensus       202 ~~~~---l~a~i~ll~qaa~~~~~~~l~~~~-a--------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         202 AAHG---LQAQIELLEQAAATPEIQDLQRRL-A--------ADPDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             HHHH---HHHHHHHHHHHhcCCCHHHHHHHH-H--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            0111   111112222222322222222221 1        12444566778999999999999999887666554

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.72  E-value=0.0046  Score=34.84  Aligned_cols=30  Identities=27%  Similarity=0.266  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          458 FPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                      .++..+|.++..+|++++|+++|++++++.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            467899999999999999999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.71  E-value=0.027  Score=45.35  Aligned_cols=81  Identities=16%  Similarity=0.160  Sum_probs=53.6

Q ss_pred             ChhHHHHHHHHHHHHHhccCH---HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcC----ChHHHHHHHHHH
Q 010063          411 HPSFVTHLLNLAASYSRSKNF---VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN----RDKEAEKLVLEA  483 (519)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~a  483 (519)
                      +|..++.+++-|.++..+.++   .++.+++++++.-+++.+. -+|....+++++|.+|..++    +..+|..+|++|
T Consensus        21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA   99 (186)
T PF06552_consen   21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA   99 (186)
T ss_dssp             -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence            466677888888887776544   4566677777666655432 24777888999999998764    455777777777


Q ss_pred             HHHHHHhcC
Q 010063          484 LYIREIAFG  492 (519)
Q Consensus       484 ~~~~~~~~~  492 (519)
                      .+.+++...
T Consensus       100 ~~~FqkAv~  108 (186)
T PF06552_consen  100 TEYFQKAVD  108 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            777766543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.67  E-value=0.039  Score=37.42  Aligned_cols=72  Identities=8%  Similarity=0.065  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcC
Q 010063          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK  196 (519)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  196 (519)
                      ...-++.+..++...+.++|+..++++++.       ..+.++...++-.+..+|...|+|.+++.+...-+.+.+.+.
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k-------~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ele   77 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALEK-------ITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELE   77 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhh-------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            344667787788999999999999999987       455778888899999999999999999998877777766543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.67  E-value=0.0054  Score=34.55  Aligned_cols=29  Identities=21%  Similarity=0.319  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063          416 THLLNLAASYSRSKNFVEAERLLRICLDI  444 (519)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (519)
                      .++..+|.++...|++++|+.+|++++.+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            57889999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.65  E-value=0.039  Score=49.70  Aligned_cols=134  Identities=11%  Similarity=0.137  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhccCCC
Q 010063          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKALRVIKDSNYMSL  367 (519)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~  367 (519)
                      +|..+.....+.+..+.|...|.+|.+        .......+|...|.+-.. .++.+.|..+|+.+++.+..      
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~------   68 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS------   68 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT------
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC------
Confidence            344555666666668999999999974        223344567778888666 56666699999999998543      


Q ss_pred             CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010063          368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (519)
Q Consensus       368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (519)
                       ...   .+......+...|+.+.|..+|++++....     ........|......-...|+.+....+.+++.+..
T Consensus        69 -~~~---~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~-----~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~  137 (280)
T PF05843_consen   69 -DPD---FWLEYLDFLIKLNDINNARALFERAISSLP-----KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF  137 (280)
T ss_dssp             --HH---HHHHHHHHHHHTT-HHHHHHHHHHHCCTSS-----CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred             -CHH---HHHHHHHHHHHhCcHHHHHHHHHHHHHhcC-----chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence             222   335556788899999999999999986421     111123566677777788899999999888888764

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.65  E-value=0.61  Score=43.88  Aligned_cols=130  Identities=18%  Similarity=0.153  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HHHHh
Q 010063          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK-IYTKV  320 (519)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~  320 (519)
                      ......+...+.+....|.++.|...+.++......    .......+....+.+....|+..+|+..++..++ .....
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~----~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~  218 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPS----SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKN  218 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc----ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Confidence            456778889999999999999999999988764211    1122456667778999999999999999998887 22221


Q ss_pred             c-------------------------CCCChhHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHhhccCCCCc
Q 010063          321 Y-------------------------GENDGRVGMAMCSLAHAKCAN------GNAEEAVELYKKALRVIKDSNYMSLDD  369 (519)
Q Consensus       321 ~-------------------------~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~  369 (519)
                      .                         .......+.++..+|......      +..+++...|.++....+.        
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------  290 (352)
T PF02259_consen  219 IDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS--------  290 (352)
T ss_pred             cccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh--------
Confidence            0                         011123556677777777777      8888899999998887332        


Q ss_pred             hHHHHHHHHHHHHHHH
Q 010063          370 SIMENMRIDLAELLHI  385 (519)
Q Consensus       370 ~~~~~~~~~la~~~~~  385 (519)
                        ....+..+|..+..
T Consensus       291 --~~k~~~~~a~~~~~  304 (352)
T PF02259_consen  291 --WEKAWHSWALFNDK  304 (352)
T ss_pred             --HHHHHHHHHHHHHH
Confidence              23455666665544

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.59  E-value=0.083  Score=47.61  Aligned_cols=133  Identities=10%  Similarity=0.073  Sum_probs=92.8

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063          248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGENDG  326 (519)
Q Consensus       248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~  326 (519)
                      |..+.......+..+.|..+|.+|++        .......+|...|.+-+. .++.+.|...|+.+++.+        +
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--------~   67 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--------P   67 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--------T
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------C
Confidence            44455666666778999999999963        233345677788888666 566666999999999865        2


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010063          327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (519)
Q Consensus       327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (519)
                      .....+......+...|+.+.|..+|++++...       +.......+|......-...|+.+....+.+++.+..
T Consensus        68 ~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-------~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~  137 (280)
T PF05843_consen   68 SDPDFWLEYLDFLIKLNDINNARALFERAISSL-------PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF  137 (280)
T ss_dssp             T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-------SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            333445555677889999999999999998752       1122134466777778888899999999988887764

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.50  E-value=0.0079  Score=33.87  Aligned_cols=30  Identities=23%  Similarity=0.180  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          458 FPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                      .++..+|.+|..+|++++|..+|++++++.
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~   31 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELN   31 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            468899999999999999999999999986

...

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.47  E-value=0.0086  Score=33.72  Aligned_cols=30  Identities=20%  Similarity=0.319  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010063          416 THLLNLAASYSRSKNFVEAERLLRICLDIM  445 (519)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (519)
                      .++..+|.+|...|++++|..+|++++++.
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~   31 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELN   31 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            578899999999999999999999999864

...

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.18  E-value=1.1  Score=43.80  Aligned_cols=188  Identities=16%  Similarity=0.161  Sum_probs=107.5

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 010063          167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT  246 (519)
Q Consensus       167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  246 (519)
                      .++..+...|++.+|.++|.+.-.-.+.+.   -....-++..+.-+...|..++-..+.++-.+-....   +.|..  
T Consensus       637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlE---myTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~---kePka--  708 (1081)
T KOG1538|consen  637 LLADVFAYQGKFHEAAKLFKRSGHENRALE---MYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNI---KEPKA--  708 (1081)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHcCchhhHHH---HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc---CCcHH--
Confidence            456777778999999888865322111100   0001114556667777777777666666554544433   22322  


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHH------HHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063          247 SLLGMAKVLGSIGRAKKAVEIY------HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (519)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (519)
                          -|..+...|+.++|+.+.      +-++++.++..    ......+..++..+.....+.-|.+.|.+.-+     
T Consensus       709 ----AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-----  775 (1081)
T KOG1538|consen  709 ----AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGD-----  775 (1081)
T ss_pred             ----HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHHHhcc-----
Confidence                266777889998887653      34455544431    22234455556666666666666666655422     


Q ss_pred             cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010063          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  399 (519)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  399 (519)
                                 ...+..++...+++++|..+.++--+             ....++.-.|+.+....++++|.+.|.+|
T Consensus       776 -----------~ksiVqlHve~~~W~eAFalAe~hPe-------------~~~dVy~pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  776 -----------LKSLVQLHVETQRWDEAFALAEKHPE-------------FKDDVYMPYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             -----------HHHHhhheeecccchHhHhhhhhCcc-------------ccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence                       12244566678888888776654222             22234455667777777777777776554

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.89  E-value=0.033  Score=32.03  Aligned_cols=36  Identities=19%  Similarity=-0.065  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCC
Q 010063          458 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  493 (519)
Q Consensus       458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  493 (519)
                      .++..||.+-...++|++|..-|++++++.++.+.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~   37 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP   37 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence            467889999999999999999999999999988764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.82  E-value=1.9  Score=41.42  Aligned_cols=256  Identities=18%  Similarity=0.129  Sum_probs=146.7

Q ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 010063          207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL  286 (519)
Q Consensus       207 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  286 (519)
                      +.....+...++.+.  ....+++........++    +.-...-+..+...|+.+.|+..++.+++..-+      ...
T Consensus       235 ~~~~~~~~~~p~~d~--~~~~~~Ll~~~~~~p~g----a~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~  302 (546)
T KOG3783|consen  235 YQFISFVLGTPNPDG--EECEKALKKYRKRYPKG----ALWLLMEARILSIKGNSEAAIDMESLSIPIRMK------QVK  302 (546)
T ss_pred             HHHHHHHcCCCCccH--HHHHHHhHHHHHhCCCC----ccHHHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHH
Confidence            334444555565555  44444444444433332    334456678888888888889998888772211      223


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HHH--------HHCCCHHHHHHHHHHHHH
Q 010063          287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA-HAK--------CANGNAEEAVELYKKALR  357 (519)
Q Consensus       287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~--------~~~g~~~~A~~~~~~al~  357 (519)
                      ...++.+|.++..+.+|..|...+....+..       +-..+ .|..++ -++        ...|+-++|..+++....
T Consensus       303 ~l~~fE~aw~~v~~~~~~~aad~~~~L~des-------dWS~a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~  374 (546)
T KOG3783|consen  303 SLMVFERAWLSVGQHQYSRAADSFDLLRDES-------DWSHA-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEE  374 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-------hhhHH-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHH
Confidence            4567788999999999999999988877642       11111 222233 222        224567777777666665


Q ss_pred             HHHhhccCCCCchHHHHHHHHHHHHHHHcCC---------------------hHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 010063          358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGR---------------------GQEGRELLEECLLITEKYKGKEHPSFVT  416 (519)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~  416 (519)
                      .....+   .+.|.-. .....+.-+...+.                     -.-+..-..++....+...-.+..+..-
T Consensus       375 l~~~a~---K~~P~E~-f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~l  450 (546)
T KOG3783|consen  375 LLANAG---KNLPLEK-FIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGL  450 (546)
T ss_pred             HHHhcc---ccCchhH-HHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHH
Confidence            554421   1111100 00111222222220                     0000001111111111111112233344


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHH
Q 010063          417 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR-DKEAEKLVLEALYIR  487 (519)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~  487 (519)
                      -+..+|.++..+|+...|..+|...++- +.....++.-...+++.+|..|..+|. ..++..++.+|.+..
T Consensus       451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~-e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~  521 (546)
T KOG3783|consen  451 KYLLKGVILRNLGDSEVAPKCFKIQVEK-ESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA  521 (546)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence            5667899999999999999999988865 223344555667789999999999998 999999999998754

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.81  E-value=0.27  Score=33.50  Aligned_cols=66  Identities=18%  Similarity=0.083  Sum_probs=54.3

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 010063          334 SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  406 (519)
Q Consensus       334 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  406 (519)
                      .-|.-++...+.++|+..+.++++..       .+.+....++..+..+|...|+|.+.+++...=+++.++.
T Consensus        11 e~GlkLY~~~~~~~Al~~W~~aL~k~-------~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el   76 (80)
T PF10579_consen   11 EKGLKLYHQNETQQALQKWRKALEKI-------TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL   76 (80)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhhc-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34444567888999999999999873       4456677888999999999999999999988888887765

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.79  E-value=1.7  Score=40.69  Aligned_cols=152  Identities=14%  Similarity=0.121  Sum_probs=105.2

Q ss_pred             CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC---------------------CCChhhHHHHHHHHHHHHh
Q 010063          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG---------------------TESADLVLPLFSLGSLFIK  299 (519)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------------------~~~~~~~~~~~~la~~~~~  299 (519)
                      +|..+.++..++.++..+|+...|.++.++|+-.++....                     ..+.....++......+.+
T Consensus        36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~  115 (360)
T PF04910_consen   36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR  115 (360)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence            5667889999999999999999999999999977764321                     1123334566777788889


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 010063          300 EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL  379 (519)
Q Consensus       300 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l  379 (519)
                      .|-+..|.++.+-.+.+     .+.. +-..+...+-....+.++++--+++++.......+     .........-+..
T Consensus       116 RG~~rTAlE~~KlLlsL-----dp~~-DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~-----~~~~~lPn~a~S~  184 (360)
T PF04910_consen  116 RGCWRTALEWCKLLLSL-----DPDE-DPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYR-----NWLSLLPNFAFSI  184 (360)
T ss_pred             cCcHHHHHHHHHHHHhc-----CCCC-CcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhh-----hhhhhCccHHHHH
Confidence            99999999999888876     2220 22334555666667888888777777765542111     0000111233667


Q ss_pred             HHHHHHcCCh---------------HHHHHHHHHHHHHH
Q 010063          380 AELLHIVGRG---------------QEGRELLEECLLIT  403 (519)
Q Consensus       380 a~~~~~~g~~---------------~~A~~~~~~al~~~  403 (519)
                      +.++...++-               ++|...+.+|+...
T Consensus       185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f  223 (360)
T PF04910_consen  185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF  223 (360)
T ss_pred             HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence            7778878877               89999999998754

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.68  E-value=2.4  Score=41.57  Aligned_cols=102  Identities=13%  Similarity=0.125  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      +++.|...++..+|..++++|...+.....    ...+..-+.....++.||....+.+.|.++++++.+..       |
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~----D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-------~  425 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIIS----DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-------R  425 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccc----hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-------c
Confidence            777888899999999999999988765322    22234446778899999999999999999999987764       2


Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVL  233 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  233 (519)
                      ...-....+-.+....|+-.+|+..........
T Consensus       426 ~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  426 QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence            222223445556667788899998888776654

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.63  E-value=1.7  Score=39.58  Aligned_cols=182  Identities=15%  Similarity=0.119  Sum_probs=120.6

Q ss_pred             HHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 010063          254 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE----GKAVDAESVFSRILKIYTKVYGENDGRVG  329 (519)
Q Consensus       254 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~  329 (519)
                      .....+++..|...+.++-..       ..   ......++.+|..-    .+..+|..+|+.+.+          ....
T Consensus        50 ~~~~~~~~~~a~~~~~~a~~~-------~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~  109 (292)
T COG0790          50 GSAYPPDYAKALKSYEKAAEL-------GD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLA  109 (292)
T ss_pred             cccccccHHHHHHHHHHhhhc-------CC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccH
Confidence            334567788888888777652       11   25666777777653    457888888885543          2334


Q ss_pred             HHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcC-------ChHHHHHHHHH
Q 010063          330 MAMCSLAHAKCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG-------RGQEGRELLEE  398 (519)
Q Consensus       330 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~  398 (519)
                      .+..++|.+|..    ..+..+|..+|.++.+.       +..+.  ..+...++.+|..-+       +...|...|.+
T Consensus       110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-------g~~~a--~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~  180 (292)
T COG0790         110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKL-------GNVEA--ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRK  180 (292)
T ss_pred             HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-------CChhH--HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHH
Confidence            467779998887    45899999999998876       22221  223466777776642       22367777776


Q ss_pred             HHHHHHHhhCCCChhHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcC---
Q 010063          399 CLLITEKYKGKEHPSFVTHLLNLAASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN---  471 (519)
Q Consensus       399 al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---  471 (519)
                      +-...          ...+...+|.+|..    ..++.+|..+|.++-+.       .+   ......++ ++...|   
T Consensus       181 aa~~~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g~g~  239 (292)
T COG0790         181 AAELG----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNGEGV  239 (292)
T ss_pred             HHHhc----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcCCCc
Confidence            65532          34577788888854    34889999999999872       22   45667778 666655   


Q ss_pred             ------------ChHHHHHHHHHHHH
Q 010063          472 ------------RDKEAEKLVLEALY  485 (519)
Q Consensus       472 ------------~~~~A~~~~~~a~~  485 (519)
                                  +...|..++..+..
T Consensus       240 ~~~~~~~~~~~~~~~~a~~~~~~~~~  265 (292)
T COG0790         240 KKAAFLTAAKEEDKKQALEWLQKACE  265 (292)
T ss_pred             hhhhhcccccCCCHHHHHHHHHHHHH
Confidence                        66677777776654

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.51  E-value=2.2  Score=39.98  Aligned_cols=155  Identities=14%  Similarity=0.096  Sum_probs=104.3

Q ss_pred             CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-------------------ccCCCCchHHHHHHHHHHHHHH
Q 010063          324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS-------------------NYMSLDDSIMENMRIDLAELLH  384 (519)
Q Consensus       324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------------~~~~~~~~~~~~~~~~la~~~~  384 (519)
                      .+|....++..++.++..+|+...|.+++++|+-.++..                   .+..+++.....++......+.
T Consensus        35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~  114 (360)
T PF04910_consen   35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG  114 (360)
T ss_pred             HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH
Confidence            357777899999999999999999999999998776632                   0112223444556677788889


Q ss_pred             HcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 010063          385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG  464 (519)
Q Consensus       385 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  464 (519)
                      +.|-+..|.++.+-.+.+..    .++|.  .++..+=....+.++++--++.++.......+..-..-|.   ..+..+
T Consensus       115 ~RG~~rTAlE~~KlLlsLdp----~~DP~--g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn---~a~S~a  185 (360)
T PF04910_consen  115 RRGCWRTALEWCKLLLSLDP----DEDPL--GVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN---FAFSIA  185 (360)
T ss_pred             hcCcHHHHHHHHHHHHhcCC----CCCcc--hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc---HHHHHH
Confidence            99999999999888776521    11332  3444444555677888777777665444211000001222   346677


Q ss_pred             HHHHhcCCh---------------HHHHHHHHHHHHHH
Q 010063          465 ITLYHLNRD---------------KEAEKLVLEALYIR  487 (519)
Q Consensus       465 ~~~~~~g~~---------------~~A~~~~~~a~~~~  487 (519)
                      .++...++.               ++|...+++|+..+
T Consensus       186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f  223 (360)
T PF04910_consen  186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF  223 (360)
T ss_pred             HHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence            888888888               89999999998755

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.50  E-value=1.6  Score=38.50  Aligned_cols=126  Identities=19%  Similarity=0.098  Sum_probs=81.1

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchH
Q 010063          292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI  371 (519)
Q Consensus       292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  371 (519)
                      .-+.-....|++.+|...+..++..        .+....+...++.+|...|+.+.|...+...=.-..       +.. 
T Consensus       139 ~~~~~~~~~e~~~~a~~~~~~al~~--------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-------~~~-  202 (304)
T COG3118         139 AEAKELIEAEDFGEAAPLLKQALQA--------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-------DKA-  202 (304)
T ss_pred             HHhhhhhhccchhhHHHHHHHHHHh--------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-------hhH-
Confidence            3455566789999999999999885        344456778899999999999999888775221111       111 


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063          372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (519)
Q Consensus       372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (519)
                       ...+......+.+.....+....-.+.-         .+|+.......+|..+...|+.++|.+.+-..+.
T Consensus       203 -~~~l~a~i~ll~qaa~~~~~~~l~~~~a---------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~  264 (304)
T COG3118         203 -AHGLQAQIELLEQAAATPEIQDLQRRLA---------ADPDDVEAALALADQLHLVGRNEAALEHLLALLR  264 (304)
T ss_pred             -HHHHHHHHHHHHHHhcCCCHHHHHHHHH---------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             1111112233333333333333222221         3566667888999999999999999988766555

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.43  E-value=0.028  Score=31.22  Aligned_cols=29  Identities=17%  Similarity=0.165  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          459 PMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       459 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                      +++.+|.++...|++++|...|++.++.+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~   30 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY   30 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            57899999999999999999999998754

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.42  E-value=0.052  Score=31.24  Aligned_cols=36  Identities=19%  Similarity=0.141  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCC
Q 010063          416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP  451 (519)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  451 (519)
                      .++..||.+-...++|++|+.-|++++++.++.+.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~   37 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP   37 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence            467889999999999999999999999998887543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=95.31  E-value=0.047  Score=50.92  Aligned_cols=93  Identities=15%  Similarity=0.055  Sum_probs=82.0

Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 010063          250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  329 (519)
Q Consensus       250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  329 (519)
                      +-+.....-+.++.|+..|.+|+++        +|..+..+.+-+..+...+++..|+.-+.++++.        +|...
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~~   72 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTYI   72 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchhh
Confidence            4566777889999999999999997        6777778888889999999999999999999984        68888


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          330 MAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      .+|...|......+++.+|...|+....+
T Consensus        73 K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l  101 (476)
T KOG0376|consen   73 KAYVRRGTAVMALGEFKKALLDLEKVKKL  101 (476)
T ss_pred             heeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence            89999999999999999999999988776

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.23  E-value=0.01  Score=52.48  Aligned_cols=99  Identities=14%  Similarity=0.032  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcC
Q 010063          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK  196 (519)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  196 (519)
                      .....-..+...+..|.+++|++.+..++.+          +|..+..+...+.++..+++...|+.-+..++.+.    
T Consensus       113 qa~e~k~~A~eAln~G~~~~ai~~~t~ai~l----------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein----  178 (377)
T KOG1308|consen  113 QANDKKVQASEALNDGEFDTAIELFTSAIEL----------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN----  178 (377)
T ss_pred             HHHHHHHHHHHHhcCcchhhhhccccccccc----------CCchhhhcccccceeeeccCCchhhhhhhhhhccC----
Confidence            3444555677789999999999999999988          88999999999999999999999999999988775    


Q ss_pred             CCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (519)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (519)
                         ++.+.-|-..|.....+|++.+|...+..+.++
T Consensus       179 ---~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl  211 (377)
T KOG1308|consen  179 ---PDSAKGYKFRGYAERLLGNWEEAAHDLALACKL  211 (377)
T ss_pred             ---cccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence               444555666777888899999999999988775

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.12  E-value=1.4  Score=35.45  Aligned_cols=148  Identities=14%  Similarity=0.160  Sum_probs=88.3

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHH
Q 010063          294 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME  373 (519)
Q Consensus       294 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  373 (519)
                      |.-|+..++-+++-..|..++++.                       ..+..++|+.-|....+.      .....|.+ 
T Consensus        46 gy~yw~~s~as~sgd~flaAL~lA-----------------------~~~k~d~Alaaf~~lekt------g~g~YpvL-   95 (221)
T COG4649          46 GYTYWQTSRASKSGDAFLAALKLA-----------------------QENKTDDALAAFTDLEKT------GYGSYPVL-   95 (221)
T ss_pred             eeehhcccccccchHHHHHHHHHH-----------------------HcCCchHHHHHHHHHHhc------CCCcchHH-
Confidence            344555666666666666665543                       235556666666554332      12223333 


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHH--HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCC
Q 010063          374 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV--THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP  451 (519)
Q Consensus       374 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  451 (519)
                       +....+.+....|+...|+..|.++-...      ..|...  .+...-+.++...|-|++-....+       ..-++
T Consensus        96 -A~mr~at~~a~kgdta~AV~aFdeia~dt------~~P~~~rd~ARlraa~lLvD~gsy~dV~srve-------pLa~d  161 (221)
T COG4649          96 -ARMRAATLLAQKGDTAAAVAAFDEIAADT------SIPQIGRDLARLRAAYLLVDNGSYDDVSSRVE-------PLAGD  161 (221)
T ss_pred             -HHHHHHHHHhhcccHHHHHHHHHHHhccC------CCcchhhHHHHHHHHHHHhccccHHHHHHHhh-------hccCC
Confidence             34567888888888888888887754321      223222  223334556677777766544333       22345


Q ss_pred             CCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010063          452 DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  485 (519)
Q Consensus       452 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  485 (519)
                      .+|....+...||..-++.|++.+|..+|.+..+
T Consensus       162 ~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         162 GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            6666667777888888888888888888887765

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=95.12  E-value=0.98  Score=33.75  Aligned_cols=96  Identities=8%  Similarity=-0.120  Sum_probs=70.8

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcc-------hhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 010063          418 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-------ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  490 (519)
Q Consensus       418 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  490 (519)
                      +..+|....+.+++-.++-.|++|+.+.++.......+       .+.+..+||..+..+|+.+=.++|++-|-+.....
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL   83 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL   83 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence            45678888999999999999999999988874222211       23456799999999999999999999888766554


Q ss_pred             cCCCCCcchhhHHHHHHHHHHHHh
Q 010063          491 FGKDSLPVGKLFCFVLFGLVWFCL  514 (519)
Q Consensus       491 ~~~~~~~~~~~~~~~~l~~~~~~l  514 (519)
                      . |+-|.+.-......||-+-..+
T Consensus        84 i-PQCp~~~C~afi~sLGCCk~AL  106 (140)
T PF10952_consen   84 I-PQCPNTECEAFIDSLGCCKKAL  106 (140)
T ss_pred             c-cCCCCcchHHHHHhhhccHHHH
Confidence            3 4566654445566777665444

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.09  E-value=0.33  Score=38.66  Aligned_cols=91  Identities=15%  Similarity=0.023  Sum_probs=69.1

Q ss_pred             chHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 010063          112 NDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGI  191 (519)
Q Consensus       112 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  191 (519)
                      .+....+..+++.+..-...++.+++..++...-.+          .|..+..-..-|..++..|+|.+|+.+++.+..-
T Consensus         4 ~C~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL----------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen    4 QCSDEIVGGLIEVLSVALRLGDPDDAEALLDALRVL----------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             cCcHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh----------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence            344556666888888888999999999988876665          7888888888999999999999999999986443


Q ss_pred             hhhcCCCchHHHHHHHHHHHHHHccccH
Q 010063          192 VDSLKDDEPLLDAILLHMGSMYSTLENY  219 (519)
Q Consensus       192 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~  219 (519)
                      .       +....+--.++.|+...|+.
T Consensus        74 ~-------~~~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   74 A-------PGFPYAKALLALCLYALGDP   94 (160)
T ss_pred             C-------CCChHHHHHHHHHHHHcCCh
Confidence            2       33333344567777777765

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=95.08  E-value=0.021  Score=53.20  Aligned_cols=95  Identities=16%  Similarity=0.097  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      +-..+..++..++++.|+.+|.+++++          +|..+..+.+.+.++...+++..|+.-+.++++..       |
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~l----------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-------P   69 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIEL----------DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-------P   69 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhc----------CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-------c
Confidence            445777888999999999999999999          88888888888999999999999999998888664       8


Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (519)
                      ....+|+.-|.+....+++.+|...|+....+
T Consensus        70 ~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l  101 (476)
T KOG0376|consen   70 TYIKAYVRRGTAVMALGEFKKALLDLEKVKKL  101 (476)
T ss_pred             hhhheeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence            88888999999999999999999999887765

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.92  E-value=0.052  Score=30.08  Aligned_cols=28  Identities=21%  Similarity=0.280  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063          417 HLLNLAASYSRSKNFVEAERLLRICLDI  444 (519)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (519)
                      +++.+|.++...|++++|...|++.++.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            6788999999999999999999999874

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=94.82  E-value=3.1  Score=37.91  Aligned_cols=167  Identities=17%  Similarity=0.156  Sum_probs=108.6

Q ss_pred             HHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh----cCChHHHHHHHHHHHhhhhhcCCCchHHH
Q 010063          128 MIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY----IGDLKFVQSLLDMMSGIVDSLKDDEPLLD  203 (519)
Q Consensus       128 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  203 (519)
                      ....+++..+...+..+-..            ..+.....++.+|..    ..+..+|..++..+...         ...
T Consensus        51 ~~~~~~~~~a~~~~~~a~~~------------~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~---------g~~  109 (292)
T COG0790          51 SAYPPDYAKALKSYEKAAEL------------GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD---------GLA  109 (292)
T ss_pred             ccccccHHHHHHHHHHhhhc------------CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc---------ccH
Confidence            34566777777777766542            111455666776654    44677888888854322         223


Q ss_pred             HHHHHHHHHHHc----cccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcC-------CHHHHHHHHHHHH
Q 010063          204 AILLHMGSMYST----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-------RAKKAVEIYHRVI  272 (519)
Q Consensus       204 ~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al  272 (519)
                      ...+.+|..|..    ..+..+|..+|+++....       ++.-..+...++..|..-.       +...|...|.++-
T Consensus       110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g-------~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa  182 (292)
T COG0790         110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG-------NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAA  182 (292)
T ss_pred             HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC-------ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHH
Confidence            346778888876    458999999999998752       2211344667777776642       2236777777765


Q ss_pred             HHHHHhcCCCChhhHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC
Q 010063          273 TILELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG  343 (519)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  343 (519)
                      ...          ...+...+|.+|..    ..++.+|..+|.++-+.       .+   ......++ ++...|
T Consensus       183 ~~~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g  236 (292)
T COG0790         183 ELG----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNG  236 (292)
T ss_pred             Hhc----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcC
Confidence            541          45677888888765    34889999999999874       22   45677777 666555

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.79  E-value=4.1  Score=39.24  Aligned_cols=220  Identities=13%  Similarity=0.024  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA  284 (519)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  284 (519)
                      ....-+..+...|+.+.|+..++.+++..-+      ......++.+|.++..+.+|..|-..+....+..       +.
T Consensus       269 wll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des-------dW  335 (546)
T KOG3783|consen  269 WLLMEARILSIKGNSEAAIDMESLSIPIRMK------QVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES-------DW  335 (546)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-------hh
Confidence            3566677778888888889988888772211      2335567788999999999999999988877652       11


Q ss_pred             hhHHHHHHHH-HHH--------HhCCCHHHHHHHHHHHHHHHHHhcCCCChhHH--------------------H--HHH
Q 010063          285 DLVLPLFSLG-SLF--------IKEGKAVDAESVFSRILKIYTKVYGENDGRVG--------------------M--AMC  333 (519)
Q Consensus       285 ~~~~~~~~la-~~~--------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--------------------~--~~~  333 (519)
                      ..+ .|..++ -++        ...|+-++|..+++...+..... |.+.|...                    .  .+.
T Consensus       336 S~a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a-~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~  413 (546)
T KOG3783|consen  336 SHA-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANA-GKNLPLEKFIVRKVERFVKRGPLNASILLASPYY  413 (546)
T ss_pred             hHH-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhc-cccCchhHHHHHHHHHHhccccccccccccchHH
Confidence            111 222222 222        22456666766666665554431 11111110                    0  112


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh
Q 010063          334 SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS  413 (519)
Q Consensus       334 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  413 (519)
                      .++.++  .|-..-+..-..++....... ... +.....--+.-+|.++...|+...|..+|...++-. .....+...
T Consensus       414 El~Y~W--ngf~~~s~~~l~k~~~~~~~~-~~~-d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e-~~~~~d~w~  488 (546)
T KOG3783|consen  414 ELAYFW--NGFSRMSKNELEKMRAELENP-KID-DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKE-SKRTEDLWA  488 (546)
T ss_pred             HHHHHH--hhcccCChhhHHHHHHHHhcc-CCC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-Hhhcccccc
Confidence            222222  221111111112222222221 111 334444455778999999999999999999888652 222345566


Q ss_pred             HHHHHHHHHHHHHhccC-HHHHHHHHHHHHHH
Q 010063          414 FVTHLLNLAASYSRSKN-FVEAERLLRICLDI  444 (519)
Q Consensus       414 ~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~  444 (519)
                      .+.+++.+|.+|..+|. ..++..++.+|-+.
T Consensus       489 ~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~  520 (546)
T KOG3783|consen  489 VPFALYELALLYWDLGGGLKEARALLLKAREY  520 (546)
T ss_pred             ccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence            77899999999999999 99999999999874

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=94.43  E-value=1.5  Score=32.47  Aligned_cols=100  Identities=11%  Similarity=0.100  Sum_probs=56.4

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHhhhhhcCCCc
Q 010063          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI----GDLKFVQSLLDMMSGIVDSLKDDE  199 (519)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~  199 (519)
                      .+..++..|++-+|+++.+..+..       ..++......+..-|.++..+    .+.+-=..++.-+++-......-.
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~-------h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls   74 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISR-------HGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS   74 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHH-------ccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence            466789999999999999998876       222333335666677777543    333333333333333333222333


Q ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 010063          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVI  230 (519)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  230 (519)
                      |..+..++.+|.-+-....|+++....++++
T Consensus        75 p~~A~~L~~la~~l~s~~~Ykk~v~kak~~L  105 (111)
T PF04781_consen   75 PDSAHSLFELASQLGSVKYYKKAVKKAKRGL  105 (111)
T ss_pred             hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            5556666666665544444445544444444

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=94.36  E-value=5.2  Score=38.57  Aligned_cols=96  Identities=7%  Similarity=-0.138  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      .......+..+ -+++..+.|++.+..          -|..+.+|......-+...+|+..+.+|.+++.-.-.     -
T Consensus        23 w~~lire~qt~-~~~~~R~~YEq~~~~----------FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-----l   86 (656)
T KOG1914|consen   23 WSQLIREAQTQ-PIDKVRETYEQLVNV----------FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-----L   86 (656)
T ss_pred             HHHHHHHHccC-CHHHHHHHHHHHhcc----------CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-----H
Confidence            33344444434 889999999998876          6667778888888888899999999999887654311     1


Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE  234 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  234 (519)
                      ++.  ...+..+-...|+...+....-+|.+...
T Consensus        87 DLW--~lYl~YVR~~~~~~~~~r~~m~qAy~f~l  118 (656)
T KOG1914|consen   87 DLW--KLYLSYVRETKGKLFGYREKMVQAYDFAL  118 (656)
T ss_pred             hHH--HHHHHHHHHHccCcchHHHHHHHHHHHHH
Confidence            111  12233344445555555555555555443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.27  E-value=1.6  Score=34.80  Aligned_cols=90  Identities=19%  Similarity=0.135  Sum_probs=68.7

Q ss_pred             CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (519)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (519)
                      +..+...+..+..+-...++.+++...+.-..-+        .|.....-..-|.++...|+|.+|+.+++.+.+     
T Consensus         6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~-----   72 (160)
T PF09613_consen    6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE-----   72 (160)
T ss_pred             cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc-----
Confidence            3455667777888888889999998887755443        566777788889999999999999999999754     


Q ss_pred             cCCCChhHHHHHHHHHHHHHHCCCHH
Q 010063          321 YGENDGRVGMAMCSLAHAKCANGNAE  346 (519)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~  346 (519)
                         ..+....+--.++.++..+|+.+
T Consensus        73 ---~~~~~p~~kALlA~CL~~~~D~~   95 (160)
T PF09613_consen   73 ---RAPGFPYAKALLALCLYALGDPS   95 (160)
T ss_pred             ---cCCCChHHHHHHHHHHHHcCChH
Confidence               34555555566788888888764

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=94.23  E-value=2.8  Score=34.94  Aligned_cols=83  Identities=11%  Similarity=0.036  Sum_probs=57.8

Q ss_pred             HHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 010063          213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS  292 (519)
Q Consensus       213 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  292 (519)
                      ++.+-.-++|...|.++-.       ......+.....+|..|. ..+.++|+.++.+++++...    ++.....++..
T Consensus       116 ~Wsr~~d~~A~~~fL~~E~-------~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~s  183 (203)
T PF11207_consen  116 HWSRFGDQEALRRFLQLEG-------TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKS  183 (203)
T ss_pred             HhhccCcHHHHHHHHHHcC-------CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHH
Confidence            3444344567766655422       222344666777887776 67899999999999998533    33445788889


Q ss_pred             HHHHHHhCCCHHHHH
Q 010063          293 LGSLFIKEGKAVDAE  307 (519)
Q Consensus       293 la~~~~~~g~~~~A~  307 (519)
                      |+.++...|+++.|-
T Consensus       184 Las~~~~~~~~e~AY  198 (203)
T PF11207_consen  184 LASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHhcchhhhh
Confidence            999999999998875

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=94.18  E-value=3.6  Score=35.94  Aligned_cols=186  Identities=17%  Similarity=0.128  Sum_probs=102.5

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063          248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGENDG  326 (519)
Q Consensus       248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~  326 (519)
                      +..+|.+....|+|++.+.+.++++..       +......-.+.++.+|-. .|..-.+...+.......+   +...+
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~-------~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~---~~~~~   73 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEM-------NPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEE---NKGNE   73 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHT-------SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTTTH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHcc-------CCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhc---ccchh
Confidence            456788999999999999999999876       122223334444444432 2333333333332222111   11111


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCC-CCchHHHHHHHHHHHHHHHc-----C-----ChHHHHHH
Q 010063          327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS-LDDSIMENMRIDLAELLHIV-----G-----RGQEGREL  395 (519)
Q Consensus       327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~~  395 (519)
                      ....    +..-|. ..=-++=.......+.+........ .+.......+-..|..|.-.     |     -.++|...
T Consensus        74 ~~~~----~i~~yk-~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~a  148 (236)
T PF00244_consen   74 KQVK----LIKDYK-KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEA  148 (236)
T ss_dssp             HHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             HHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHh
Confidence            1111    111111 0011233344555555554421111 12222222333344444321     1     24689999


Q ss_pred             HHHHHHHHHHhhCCCChhHHHHHHHHHHHH-HhccCHHHHHHHHHHHHHHHHHh
Q 010063          396 LEECLLITEKYKGKEHPSFVTHLLNLAASY-SRSKNFVEAERLLRICLDIMTKT  448 (519)
Q Consensus       396 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~  448 (519)
                      |++|+.+....+++.+|.......+.+..| ...|+.++|....+++++-....
T Consensus       149 Y~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~  202 (236)
T PF00244_consen  149 YEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISE  202 (236)
T ss_dssp             HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHG
T ss_pred             hhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence            999999999988899999888888888776 45899999999999998866543

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=93.76  E-value=0.84  Score=32.68  Aligned_cols=36  Identities=11%  Similarity=-0.018  Sum_probs=29.5

Q ss_pred             ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhh
Q 010063          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD  193 (519)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  193 (519)
                      +|....+.+.+|..+...|++++|++.+-.++....
T Consensus        18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr   53 (90)
T PF14561_consen   18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDR   53 (90)
T ss_dssp             STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            888889999999999999999999999888776543

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=93.74  E-value=4.3  Score=35.41  Aligned_cols=186  Identities=14%  Similarity=0.064  Sum_probs=104.1

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhccCCCC
Q 010063          290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKALRVIKDSNYMSLD  368 (519)
Q Consensus       290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~  368 (519)
                      +..++.+....|+|++.+.++++++...       ..-...-.+.++.+|-. .|....+...+.........    ...
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~~-------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~----~~~   72 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEMN-------PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEEN----KGN   72 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHTS-------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TTT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccC-------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcc----cch
Confidence            4568889999999999999999998861       11122223333433321 23334444444433332221    111


Q ss_pred             chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC--Chh-HHHHHHHHHHHHHh-----cc-----CHHHHH
Q 010063          369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE--HPS-FVTHLLNLAASYSR-----SK-----NFVEAE  435 (519)
Q Consensus       369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~-~~~~~~~la~~~~~-----~g-----~~~~A~  435 (519)
                      ....     .+..-|.. .=-++=.......+.+....+-+.  .+. ....+...|..|.-     .|     -.++|.
T Consensus        73 ~~~~-----~~i~~yk~-kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~  146 (236)
T PF00244_consen   73 EKQV-----KLIKDYKK-KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKAL  146 (236)
T ss_dssp             HHHH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred             hHHH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHH
Confidence            1111     11111110 001222334444555444332111  122 22222334554432     22     247899


Q ss_pred             HHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhcC
Q 010063          436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREIAFG  492 (519)
Q Consensus       436 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~  492 (519)
                      ..|++|+.+....+.|.+|.......+.+..|+. .|+.++|....+++++-....++
T Consensus       147 ~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~  204 (236)
T PF00244_consen  147 EAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELD  204 (236)
T ss_dssp             HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGG
T ss_pred             HhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Confidence            9999999999998899999998888888887754 89999999999999987766554

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=93.73  E-value=4.6  Score=35.65  Aligned_cols=187  Identities=12%  Similarity=0.024  Sum_probs=111.9

Q ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC---C-------HHHHHHHHHHHHHHhhcC--------------CH
Q 010063          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT---S-------ILLVTSLLGMAKVLGSIG--------------RA  261 (519)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~-------~~~~~~~~~la~~~~~~g--------------~~  261 (519)
                      -+.+-.++...|+..+|+..+++=+.......++.   .       ...+.-+..+|.+.....              -|
T Consensus        13 ~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy   92 (247)
T PF11817_consen   13 AFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYY   92 (247)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHH
Confidence            45667888899999999999998888777665441   1       112223344454443332              12


Q ss_pred             HHHHHHHHHHHHHHHHhcC-CC-Ch------------------hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063          262 KKAVEIYHRVITILELNRG-TE-SA------------------DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (519)
Q Consensus       262 ~~A~~~~~~al~~~~~~~~-~~-~~------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (519)
                      ..|-.+...-.+..+.... |+ .+                  .....+................++++.+|++.++...
T Consensus        93 ~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~~  172 (247)
T PF11817_consen   93 QIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKYG  172 (247)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHhc
Confidence            3333333332333333310 01 00                  0000000111111122334566888888888887653


Q ss_pred             CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010063          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  398 (519)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  398 (519)
                        ...........+|..|...|++++|..+++.+...+.+.    .-......++..+..|+...|+.+..+.+.-+
T Consensus       173 --~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e----gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le  243 (247)
T PF11817_consen  173 --QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE----GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE  243 (247)
T ss_pred             --cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC----CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence              233355566789999999999999999999998887763    33455567778889999999998877765443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=93.70  E-value=5.8  Score=36.67  Aligned_cols=148  Identities=12%  Similarity=0.056  Sum_probs=93.7

Q ss_pred             ChhhHHHHHHHHHHHHhCCC------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 010063          283 SADLVLPLFSLGSLFIKEGK------------AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE  350 (519)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  350 (519)
                      +|....++..+.......-.            .+.-+.++++|++.        +|.....+..+-....+..+.++..+
T Consensus        15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l~~   86 (321)
T PF08424_consen   15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKLAK   86 (321)
T ss_pred             CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            56666666666554433322            34445566666663        33333333334444556667777777


Q ss_pred             HHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC----------ChhHHHHHHH
Q 010063          351 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE----------HPSFVTHLLN  420 (519)
Q Consensus       351 ~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~  420 (519)
                      -+++++..       .+....+...|...-..-...-.++.....|.+++..........          ......++..
T Consensus        87 ~we~~l~~-------~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r  159 (321)
T PF08424_consen   87 KWEELLFK-------NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLR  159 (321)
T ss_pred             HHHHHHHH-------CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Confidence            78877775       344555555544444444445568899999999998876654322          2244566777


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHHH
Q 010063          421 LAASYSRSKNFVEAERLLRICLDIM  445 (519)
Q Consensus       421 la~~~~~~g~~~~A~~~~~~al~~~  445 (519)
                      +.....+.|..+.|+..++-.+++.
T Consensus       160 ~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  160 LCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HHHHHHHCCchHHHHHHHHHHHHHH
Confidence            8888899999999999999988864

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.53  E-value=0.065  Score=47.69  Aligned_cols=89  Identities=20%  Similarity=0.137  Sum_probs=77.7

Q ss_pred             HHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 010063          254 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMC  333 (519)
Q Consensus       254 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  333 (519)
                      -.+..|.+++|++.+..++.+        +|..+..+...+.++...++...|+.-+..++.+        +++.+.-|-
T Consensus       123 eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~yk  186 (377)
T KOG1308|consen  123 EALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKGYK  186 (377)
T ss_pred             HHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccccc
Confidence            344578899999999999886        6778889999999999999999999999999985        567777777


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          334 SLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       334 ~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      ..+.....+|++++|...+..+.++
T Consensus       187 frg~A~rllg~~e~aa~dl~~a~kl  211 (377)
T KOG1308|consen  187 FRGYAERLLGNWEEAAHDLALACKL  211 (377)
T ss_pred             hhhHHHHHhhchHHHHHHHHHHHhc
Confidence            8888899999999999999998876

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=93.50  E-value=6.6  Score=36.73  Aligned_cols=193  Identities=16%  Similarity=0.098  Sum_probs=131.2

Q ss_pred             ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (519)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (519)
                      -.........-+.++....++..|..++.+..-.+.+.  .+......++..++.++.+.+..-.+..+.-.++....+-
T Consensus       269 ~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~--~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey  346 (482)
T KOG4322|consen  269 YQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKG--CNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEY  346 (482)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHh
Confidence            33445666678889999999999999998887654332  2233456677778888888888888888877777666552


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH------HhccCHHHHHH
Q 010063          363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY------SRSKNFVEAER  436 (519)
Q Consensus       363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~------~~~g~~~~A~~  436 (519)
                         .- +......-.+++..+...|-.++|...+..++....-..|-+.  .+.++...+.|+      ....+.+.+..
T Consensus       347 ---~l-dyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~d--rara~fvfanC~lA~a~s~~~e~ld~~~~  420 (482)
T KOG4322|consen  347 ---SL-DYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDD--RARAIFVFANCTLAFALSCANESLDGFPR  420 (482)
T ss_pred             ---cc-chhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhh--cceeEEEEEeeeecchhhhhhhhHHhhHH
Confidence               22 2222344467888999999999999999999876543322111  111111111111      14557888899


Q ss_pred             HHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChH---HHHHHHHHHHH
Q 010063          437 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDK---EAEKLVLEALY  485 (519)
Q Consensus       437 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~---~A~~~~~~a~~  485 (519)
                      +++++-.++.+.  ..|..+.++.+-++..|-..|+.+   ++...|+++..
T Consensus       421 ~L~~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~  470 (482)
T KOG4322|consen  421 YLDLAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR  470 (482)
T ss_pred             HHHHHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence            999999888876  456678888899999999999865   45555666554

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=93.39  E-value=5.1  Score=35.95  Aligned_cols=128  Identities=13%  Similarity=0.071  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC
Q 010063          265 VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN  344 (519)
Q Consensus       265 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  344 (519)
                      ++-+.+.++-.++..|  ......++.+.|..|.+.|+-+.|.+.+.+..+-.-...  ...++......+|..|...  
T Consensus        84 i~eld~~iedaeenlG--E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~D~--  157 (393)
T KOG0687|consen   84 IKELDEKIEDAEENLG--ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYLDH--  157 (393)
T ss_pred             HHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhccH--
Confidence            3444445554444432  345678889999999999999999999998877543331  2344555666777777544  


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010063          345 AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (519)
Q Consensus       345 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (519)
                       +--.+..+++-.+.++    |.|..........-|.......++.+|-.+|-.++..+
T Consensus       158 -~lV~~~iekak~liE~----GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF  211 (393)
T KOG0687|consen  158 -DLVTESIEKAKSLIEE----GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTF  211 (393)
T ss_pred             -HHHHHHHHHHHHHHHh----CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence             3344444555555554    56665555555556777777888999999988877654

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=93.36  E-value=6.9  Score=36.57  Aligned_cols=197  Identities=14%  Similarity=0.019  Sum_probs=133.4

Q ss_pred             CCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 010063          240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  319 (519)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  319 (519)
                      +-...++....-+.++....++..|...+.+..-...+  +........++..++.++..-+....+..+.-.++....+
T Consensus       268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~se  345 (482)
T KOG4322|consen  268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSE  345 (482)
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence            33444666777899999999999999999888654432  2234456677888888888888888888888887776655


Q ss_pred             hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCc---hHHHHHHHHHHHHHHHcCChHHHHHHH
Q 010063          320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD---SIMENMRIDLAELLHIVGRGQEGRELL  396 (519)
Q Consensus       320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~  396 (519)
                      ..  .+...+..-.+++......|..+.|...+..++....-.+.+....   ...+.++..-+..+ ...+.+.+..++
T Consensus       346 y~--ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L  422 (482)
T KOG4322|consen  346 YS--LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYL  422 (482)
T ss_pred             hc--cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHH
Confidence            42  2223444566788888999999999999999988765431111100   00011111111111 455678888888


Q ss_pred             HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHH---HHHHHHHHHHH
Q 010063          397 EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV---EAERLLRICLD  443 (519)
Q Consensus       397 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~  443 (519)
                      +++-.+..+..  -+....++.+.++..|-..|+.+   ++...|+++..
T Consensus       423 ~~A~~~f~kL~--~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~  470 (482)
T KOG4322|consen  423 DLAQSIFYKLG--CHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR  470 (482)
T ss_pred             HHHHHHHHHcc--chHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence            88888887762  46667788889999999999865   45566666655

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.34  E-value=3.6  Score=33.22  Aligned_cols=132  Identities=14%  Similarity=0.075  Sum_probs=93.3

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchH
Q 010063          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL  201 (519)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  201 (519)
                      +..+..+...+..++|+.-|...-+.        .....-.-+....+.+....|+...|+..|.++-...     ..|.
T Consensus        62 flaAL~lA~~~k~d~Alaaf~~lekt--------g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-----~~P~  128 (221)
T COG4649          62 FLAALKLAQENKTDDALAAFTDLEKT--------GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-----SIPQ  128 (221)
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-----CCcc
Confidence            34556667788888888877764332        2223334466788999999999999999998865543     1132


Q ss_pred             H--HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010063          202 L--DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT  273 (519)
Q Consensus       202 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  273 (519)
                      .  ..+...-+..+...|-|++-....       +.+-++.+|....+...||..-++.|++.+|..+|.+...
T Consensus       129 ~~rd~ARlraa~lLvD~gsy~dV~srv-------epLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         129 IGRDLARLRAAYLLVDNGSYDDVSSRV-------EPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             hhhHHHHHHHHHHHhccccHHHHHHHh-------hhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            2  223445567778888887655433       3334566787788888999999999999999999998765

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.34  E-value=6.6  Score=40.04  Aligned_cols=50  Identities=20%  Similarity=0.248  Sum_probs=39.3

Q ss_pred             HHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Q 010063          184 LLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL  233 (519)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  233 (519)
                      .|.-|+.+++....+......++...|..++.+|++++|...|-+++...
T Consensus       349 ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l  398 (933)
T KOG2114|consen  349 LYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL  398 (933)
T ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence            34445555555566667788889999999999999999999999987653

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=93.33  E-value=0.93  Score=35.48  Aligned_cols=91  Identities=10%  Similarity=-0.083  Sum_probs=65.0

Q ss_pred             chHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 010063          112 NDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGI  191 (519)
Q Consensus       112 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  191 (519)
                      .+....+..+++.+..-...++.+++..++...--+          .|..+..-..-|..++..|+|.+|+.+++....-
T Consensus         4 qCs~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL----------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561         4 QCSNRLLGGLIEVLMYALRSADPYDAQAMLDALRVL----------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS   73 (153)
T ss_pred             cCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence            344445566777777777799999998888766555          7777778888899999999999999999886543


Q ss_pred             hhhcCCCchHHHHHHHHHHHHHHccccH
Q 010063          192 VDSLKDDEPLLDAILLHMGSMYSTLENY  219 (519)
Q Consensus       192 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~  219 (519)
                      .       +.....--.++.|+...|+.
T Consensus        74 ~-------~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        74 A-------GAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             C-------CCchHHHHHHHHHHHhcCCh
Confidence            2       22222233466677666664

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=93.28  E-value=4.6  Score=35.54  Aligned_cols=132  Identities=11%  Similarity=0.001  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 010063          262 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA  341 (519)
Q Consensus       262 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  341 (519)
                      ++-++-+.+.++-.+...  .......++.++|..|...++.+.+.+++.+.+.-.....  -..++..+-..+|.+|..
T Consensus        92 eeki~Elde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg--~KiDv~l~kiRlg~~y~d  167 (412)
T COG5187          92 EEKIEELDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG--LKIDVFLCKIRLGLIYGD  167 (412)
T ss_pred             HHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHhhcc
Confidence            344455555555444433  2345678999999999999999999999998887554432  233455556667777765


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010063          342 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (519)
Q Consensus       342 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (519)
                      +.-.++.++..+..++   +    |.+...........|.......++.+|-.++-..+..+.
T Consensus       168 ~~vV~e~lE~~~~~iE---k----GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~  223 (412)
T COG5187         168 RKVVEESLEVADDIIE---K----GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE  223 (412)
T ss_pred             HHHHHHHHHHHHHHHH---h----CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence            5444554444444333   3    556555545555567777778888999888887776543

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=93.07  E-value=5.9  Score=34.96  Aligned_cols=188  Identities=12%  Similarity=0.028  Sum_probs=111.6

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC---C---hh----hHHHHHHHHHHHHhCC--------------CH
Q 010063          248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE---S---AD----LVLPLFSLGSLFIKEG--------------KA  303 (519)
Q Consensus       248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~---~~----~~~~~~~la~~~~~~g--------------~~  303 (519)
                      .+.+..++...|+..+|+.-+++=+..+....+..   .   ..    .+.-+..+|.+.....              -|
T Consensus        13 ~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy   92 (247)
T PF11817_consen   13 AFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYY   92 (247)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHH
Confidence            34567889999999999999998888877665431   1   00    1112233455444332              12


Q ss_pred             HHHHHHHHHHHHHHHHhcC-CC-------------------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010063          304 VDAESVFSRILKIYTKVYG-EN-------------------DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (519)
Q Consensus       304 ~~A~~~~~~al~~~~~~~~-~~-------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (519)
                      ..|-.+...--+.+..... +.                   .+.....+................++++.+|...++.. 
T Consensus        93 ~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~-  171 (247)
T PF11817_consen   93 QIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKY-  171 (247)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHh-
Confidence            3333333222222222210 00                   00000011111111112234456788899999988864 


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010063          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  441 (519)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (519)
                         ........+...+|..|...|++++|..+++.+...+++.  .-..-...++..+..|+...|+.+..+.+.-+.
T Consensus       172 ---~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  172 ---GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             ---ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence               3355556667889999999999999999999997776553  123344567788899999999988877665443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.76  E-value=1.2  Score=37.02  Aligned_cols=83  Identities=18%  Similarity=0.100  Sum_probs=59.1

Q ss_pred             HcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 010063          385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG  464 (519)
Q Consensus       385 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  464 (519)
                      .+-.-++|...|-++-       |....+.+.....||..|. ..+.++|+.++.+++++..    +++.-...++..|+
T Consensus       118 sr~~d~~A~~~fL~~E-------~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sLa  185 (203)
T PF11207_consen  118 SRFGDQEALRRFLQLE-------GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PDDNFNPEILKSLA  185 (203)
T ss_pred             hccCcHHHHHHHHHHc-------CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHH
Confidence            3333456665554432       3344456778888998887 5789999999999999753    33344566788999


Q ss_pred             HHHHhcCChHHHHHH
Q 010063          465 ITLYHLNRDKEAEKL  479 (519)
Q Consensus       465 ~~~~~~g~~~~A~~~  479 (519)
                      .++..+|+++.|.-+
T Consensus       186 s~~~~~~~~e~AYiw  200 (203)
T PF11207_consen  186 SIYQKLKNYEQAYIW  200 (203)
T ss_pred             HHHHHhcchhhhhhh
Confidence            999999999998643

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=92.71  E-value=9.9  Score=36.63  Aligned_cols=178  Identities=12%  Similarity=0.049  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccH-------HHHHHHHHHHHHHHHHh
Q 010063          164 ILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENY-------EKSMLVYQRVINVLESR  236 (519)
Q Consensus       164 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~al~~~~~~  236 (519)
                      ....+|+.++..|||+-|...|+.+.+-+.. .......+.++-..|.+....+..       ++...+++.|...+...
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~-Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~  288 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKN-DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS  288 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHhh-chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence            4678999999999999999999998876632 111123444555556666655533       37778888888777662


Q ss_pred             cC---CCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChh---hHHHHHHHHHHH--HhCCCHHHHHH
Q 010063          237 YG---KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD---LVLPLFSLGSLF--IKEGKAVDAES  308 (519)
Q Consensus       237 ~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~--~~~g~~~~A~~  308 (519)
                      ..   ........+....+.++...|.+.+|...+-+.....-.    ....   .+..+-.+|.+|  ...........
T Consensus       289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~----~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~  364 (414)
T PF12739_consen  289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILE----SDLRPFGSALLLEQAAYCYASLRSNRPSPGLT  364 (414)
T ss_pred             hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHh----hhhhhHhhHHHHHHHHHhhcccccCCCCccch
Confidence            11   111244566777788888999998888877666654210    1111   334444555555  11100000000


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063          309 VFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (519)
Q Consensus       309 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (519)
                      -               ....+.-+..-|.-|...|+...|..+|.+++.++..
T Consensus       365 r---------------~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~  402 (414)
T PF12739_consen  365 R---------------FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG  402 (414)
T ss_pred             h---------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence            0               1122323334467888999999999999999998764

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>smart00028 TPR Tetratricopeptide repeats

Probab=92.70  E-value=0.19  Score=27.16  Aligned_cols=29  Identities=24%  Similarity=0.225  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063          458 FPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (519)
Q Consensus       458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (519)
                      .++..+|.++...|++++|...+++++++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            35688999999999999999999999874

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=92.44  E-value=26  Score=40.72  Aligned_cols=68  Identities=13%  Similarity=0.029  Sum_probs=58.1

Q ss_pred             ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010063          411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  488 (519)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  488 (519)
                      ......+|...|++....|+++.|..+.-+|.+..          ...+....|..+..+|+...|+..+++.++...
T Consensus      1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred             cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence            55678999999999999999999999988887721          335678889999999999999999999997663

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.25  E-value=0.24  Score=25.73  Aligned_cols=24  Identities=29%  Similarity=0.311  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHH
Q 010063          459 PMLHLGITLYHLNRDKEAEKLVLE  482 (519)
Q Consensus       459 ~~~~la~~~~~~g~~~~A~~~~~~  482 (519)
                      +...+|.++...|++++|...+++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhC
Confidence            567899999999999999998763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=92.23  E-value=8  Score=34.41  Aligned_cols=203  Identities=14%  Similarity=0.043  Sum_probs=101.8

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHhhccCCCCchHH
Q 010063          294 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE-EAVELYKKALRVIKDSNYMSLDDSIM  372 (519)
Q Consensus       294 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~  372 (519)
                      +..+.+.|++..|.++..-.++.+.+..   .+.......+++.+....+.-+ +-..+.+++++.. +.   +..+..-
T Consensus        17 a~~ll~~~Q~~sg~DL~~lliev~~~~~---~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~---~~~~~Gd   89 (260)
T PF04190_consen   17 ALILLKHGQYGSGADLALLLIEVYEKSE---DPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KF---GSYKFGD   89 (260)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HT---SS-TT--
T ss_pred             HHHHHHCCCcchHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-cc---CCCCCCC
Confidence            3445556666666666666666665532   1222223345666665554332 4556677777776 32   2333344


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHH-----------HHHHHHhhCCCChhHHHHHH-HHHHHHHhccCHHHHHHHHHH
Q 010063          373 ENMRIDLAELLHIVGRGQEGRELLEEC-----------LLITEKYKGKEHPSFVTHLL-NLAASYSRSKNFVEAERLLRI  440 (519)
Q Consensus       373 ~~~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~  440 (519)
                      ...+..+|..+.+.|++.+|..++-.+           +......   ..+.....+. ....-|...++...|...+..
T Consensus        90 p~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~---~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~  166 (260)
T PF04190_consen   90 PELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK---GYPSEADLFIARAVLQYLCLGNLRDANELFDT  166 (260)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH---TSS--HHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh---cCCcchhHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            566788999999999999999887321           1111111   1122222232 233457778999999988877


Q ss_pred             HHHHHHHh----------cCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHH
Q 010063          441 CLDIMTKT----------VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLV  510 (519)
Q Consensus       441 al~~~~~~----------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~  510 (519)
                      -.+...+.          ..+..|. ......|-.+. ..+    +...|....+.+...+..   +......+..||..
T Consensus       167 f~~~~~~~~p~~~~~~~~~~~~~Pl-lnF~~lLl~t~-e~~----~~~~F~~L~~~Y~~~L~r---d~~~~~~L~~IG~~  237 (260)
T PF04190_consen  167 FTSKLIESHPKLENSDIEYPPSYPL-LNFLQLLLLTC-ERD----NLPLFKKLCEKYKPSLKR---DPSFKEYLDKIGQL  237 (260)
T ss_dssp             HHHHHHHH---EEEEEEEEESS-HH-HHHHHHHHHHH-HHT-----HHHHHHHHHHTHH---H---HHHTHHHHHHHHHH
T ss_pred             HHHHHhccCcchhccccCCCCCCch-HHHHHHHHHHH-hcC----cHHHHHHHHHHhCccccc---cHHHHHHHHHHHHH
Confidence            77653322          0011121 11122222222 233    346677776666654432   22334668889999


Q ss_pred             HHHhh
Q 010063          511 WFCLL  515 (519)
Q Consensus       511 ~~~lg  515 (519)
                      |....
T Consensus       238 yFgi~  242 (260)
T PF04190_consen  238 YFGIQ  242 (260)
T ss_dssp             HH---
T ss_pred             HCCCC
Confidence            98754

; PDB: 3LKU_E 2WPV_G.

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]

Probab=92.23  E-value=5.3  Score=36.03  Aligned_cols=90  Identities=24%  Similarity=0.337  Sum_probs=68.9

Q ss_pred             HHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHH
Q 010063          129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH  208 (519)
Q Consensus       129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (519)
                      -+.+|.++|+++.++..+..+..    ..+.........+|.++...||..++.+.+.......+.+..-.+.+...++.
T Consensus        86 ~~~~D~~~al~~Le~i~~~~~~~----~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~  161 (380)
T KOG2908|consen   86 EQISDKDEALEFLEKIIEKLKEY----KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYS  161 (380)
T ss_pred             HHhccHHHHHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHH
Confidence            44568999999999998876653    22345566778899999999999999999999998888877777766666777


Q ss_pred             HHHHHH-ccccHHHH
Q 010063          209 MGSMYS-TLENYEKS  222 (519)
Q Consensus       209 l~~~~~-~~g~~~~A  222 (519)
                      ++.-|+ ..|++...
T Consensus       162 lssqYyk~~~d~a~y  176 (380)
T KOG2908|consen  162 LSSQYYKKIGDFASY  176 (380)
T ss_pred             HHHHHHHHHHhHHHH
Confidence            776655 45776553

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=92.18  E-value=12  Score=36.16  Aligned_cols=180  Identities=13%  Similarity=0.010  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCH-------HHHHHHHHHHHHHHH
Q 010063          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA-------VDAESVFSRILKIYT  318 (519)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~  318 (519)
                      .....+|...+..|+|+-|...|+.+.+-+..-  ......+.+.-..|.+....+..       ++...+++.|+..+.
T Consensus       209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~  286 (414)
T PF12739_consen  209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL  286 (414)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence            345678999999999999999999988766431  12233445555566666665533       477888899888887


Q ss_pred             HhcCC---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HhhccCCCCchHHHHHHHHHHHHH--HHcCChHH
Q 010063          319 KVYGE---NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI--KDSNYMSLDDSIMENMRIDLAELL--HIVGRGQE  391 (519)
Q Consensus       319 ~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~  391 (519)
                      +...+   .......+....+.++...|.+.+|...+-+.....  ...     .....+-.+..+|.++  ........
T Consensus       287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l-----~~~~~alllE~~a~~~~~~~~~~~~~  361 (414)
T PF12739_consen  287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDL-----RPFGSALLLEQAAYCYASLRSNRPSP  361 (414)
T ss_pred             hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhh-----hhHhhHHHHHHHHHhhcccccCCCCc
Confidence            73211   122445566677888888999888877766665542  111     0000233444555555  11100000


Q ss_pred             HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010063          392 GRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK  447 (519)
Q Consensus       392 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  447 (519)
                      -..-               ....+.-+..-|.-|...|+...|..+|.+++.++..
T Consensus       362 ~~~r---------------~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~  402 (414)
T PF12739_consen  362 GLTR---------------FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG  402 (414)
T ss_pred             cchh---------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence            0000               1112222333467889999999999999999998753

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=92.08  E-value=2  Score=27.07  Aligned_cols=29  Identities=21%  Similarity=0.163  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010063          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (519)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (519)
                      ..++.+|..+...|+|++|..+.+.++++
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~   30 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEI   30 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            35778999999999999999999999998

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=92.07  E-value=13  Score=36.50  Aligned_cols=128  Identities=13%  Similarity=-0.010  Sum_probs=92.7

Q ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010063          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  405 (519)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  405 (519)
                      +.....|..-...-...|+++...-.+++++--+..          ....|...+......|+.+-|...+..+.++.. 
T Consensus       294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~----------Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~-  362 (577)
T KOG1258|consen  294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL----------YDEFWIKYARWMESSGDVSLANNVLARACKIHV-  362 (577)
T ss_pred             HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh----------hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC-
Confidence            344556666677778899999999999998865432          234567778888888999988888888877652 


Q ss_pred             hhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHH
Q 010063          406 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK  478 (519)
Q Consensus       406 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  478 (519)
                            +....+...-+.+-...|+++.|...++...+        +-|....+-..-..+...+|+.+.+..
T Consensus       363 ------k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~--------e~pg~v~~~l~~~~~e~r~~~~~~~~~  421 (577)
T KOG1258|consen  363 ------KKTPIIHLLEARFEESNGNFDDAKVILQRIES--------EYPGLVEVVLRKINWERRKGNLEDANY  421 (577)
T ss_pred             ------CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHh--------hCCchhhhHHHHHhHHHHhcchhhhhH
Confidence                  33334445556677788999999999998776        225665555566677788888888875

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=92.02  E-value=0.39  Score=46.13  Aligned_cols=96  Identities=21%  Similarity=0.281  Sum_probs=75.4

Q ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (519)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (519)
                      ++..|..+...|+...|..++..|+.....       .....+.++|.+....|-...|-..+.+++.+.        ..
T Consensus       610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~-------~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--------~s  674 (886)
T KOG4507|consen  610 LNEAGLYWRAVGNSTFAIACLQRALNLAPL-------QQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--------SS  674 (886)
T ss_pred             eecccceeeecCCcHHHHHHHHHHhccChh-------hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--------cc
Confidence            344455555689999999999999875321       223346688999999999999999999999884        12


Q ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (519)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (519)
                      .....+.+|++|....+.+.|++.+++|++.
T Consensus       675 epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~  705 (886)
T KOG4507|consen  675 EPLTFLSLGNAYLALKNISGALEAFRQALKL  705 (886)
T ss_pred             CchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence            2356678999999999999999999999985

>smart00028 TPR Tetratricopeptide repeats

Probab=91.96  E-value=0.24  Score=26.68  Aligned_cols=29  Identities=24%  Similarity=0.515  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063          288 LPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (519)
Q Consensus       288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (519)
                      .++..+|.++...|++++|...+++++++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            45778999999999999999999999874

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=91.87  E-value=2.1  Score=26.94  Aligned_cols=28  Identities=21%  Similarity=0.229  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          331 AMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      .++.+|..+.+.|+|++|..+.+.++++
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~   30 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEI   30 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            5678899999999999999999999998

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=91.67  E-value=9.3  Score=33.99  Aligned_cols=215  Identities=8%  Similarity=-0.015  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChH-HHHHHHHHHHhhh
Q 010063          114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLK-FVQSLLDMMSGIV  192 (519)
Q Consensus       114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~  192 (519)
                      ....++.++.-+..+.+.|++..|.++..-.++.+.+..     .+........+..+....+.-+ +-..+.++++++.
T Consensus         6 y~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~-----~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS   80 (260)
T PF04190_consen    6 YDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSE-----DPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS   80 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--------SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence            344556688888999999999999999988888876632     2222333456666666655433 4556677888887


Q ss_pred             hhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHH-----------HHHHhcCCCCHHHHHHHHHHHHHHhhcCCH
Q 010063          193 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVIN-----------VLESRYGKTSILLVTSLLGMAKVLGSIGRA  261 (519)
Q Consensus       193 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  261 (519)
                       ..+....-....+..+|..+++.|++.+|..++-..-.           ..... +.. .+...........|...++.
T Consensus        81 -~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~-~~~-~e~dlfi~RaVL~yL~l~n~  157 (260)
T PF04190_consen   81 -KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK-GYP-SEADLFIARAVLQYLCLGNL  157 (260)
T ss_dssp             -HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH-TSS---HHHHHHHHHHHHHHTTBH
T ss_pred             -ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh-cCC-cchhHHHHHHHHHHHHhcCH
Confidence             43444334455688999999999999999988743211           11111 111 11122222333446678999


Q ss_pred             HHHHHHHHHHHHHHHHhc----------CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 010063          262 KKAVEIYHRVITILELNR----------GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA  331 (519)
Q Consensus       262 ~~A~~~~~~al~~~~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  331 (519)
                      ..|...+..-.+......          ....|.. .....|-.+. ..+    +...|....+.++.... .+|.....
T Consensus       158 ~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~Pll-nF~~lLl~t~-e~~----~~~~F~~L~~~Y~~~L~-rd~~~~~~  230 (260)
T PF04190_consen  158 RDANELFDTFTSKLIESHPKLENSDIEYPPSYPLL-NFLQLLLLTC-ERD----NLPLFKKLCEKYKPSLK-RDPSFKEY  230 (260)
T ss_dssp             HHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHH-HHHHHHHHHH-HHT-----HHHHHHHHHHTHH----HHHHTHHH
T ss_pred             HHHHHHHHHHHHHHhccCcchhccccCCCCCCchH-HHHHHHHHHH-hcC----cHHHHHHHHHHhCcccc-ccHHHHHH
Confidence            999988877776532221          0112221 1111122222 223    34566666665554331 23455666


Q ss_pred             HHHHHHHHHHCC
Q 010063          332 MCSLAHAKCANG  343 (519)
Q Consensus       332 ~~~la~~~~~~g  343 (519)
                      +..+|..|+...
T Consensus       231 L~~IG~~yFgi~  242 (260)
T PF04190_consen  231 LDKIGQLYFGIQ  242 (260)
T ss_dssp             HHHHHHHHH---
T ss_pred             HHHHHHHHCCCC
Confidence            777787777643

; PDB: 3LKU_E 2WPV_G.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.65  E-value=0.3  Score=25.30  Aligned_cols=24  Identities=17%  Similarity=0.346  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHH
Q 010063          288 LPLFSLGSLFIKEGKAVDAESVFS  311 (519)
Q Consensus       288 ~~~~~la~~~~~~g~~~~A~~~~~  311 (519)
                      .+...+|.++...|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            356789999999999999998875

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=91.51  E-value=0.66  Score=44.68  Aligned_cols=91  Identities=24%  Similarity=0.361  Sum_probs=72.4

Q ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 010063          253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM  332 (519)
Q Consensus       253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  332 (519)
                      ..+...|+...|..++..|+...       .......+.+|+.++...|-...|-.++.+++.+.        .......
T Consensus       615 lywr~~gn~~~a~~cl~~a~~~~-------p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--------~sepl~~  679 (886)
T KOG4507|consen  615 LYWRAVGNSTFAIACLQRALNLA-------PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--------SSEPLTF  679 (886)
T ss_pred             ceeeecCCcHHHHHHHHHHhccC-------hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--------ccCchHH
Confidence            33455799999999999998652       22334567789999999999999999999999874        1122356


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          333 CSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       333 ~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      ..+|..+....+.+.|++.+++|++.
T Consensus       680 ~~~g~~~l~l~~i~~a~~~~~~a~~~  705 (886)
T KOG4507|consen  680 LSLGNAYLALKNISGALEAFRQALKL  705 (886)
T ss_pred             HhcchhHHHHhhhHHHHHHHHHHHhc
Confidence            77899999999999999999999987

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=91.49  E-value=9.4  Score=33.69  Aligned_cols=133  Identities=17%  Similarity=0.082  Sum_probs=79.8

Q ss_pred             CHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 010063          344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA  423 (519)
Q Consensus       344 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  423 (519)
                      .-++-++-+++.++-.++.    ........++.++|..|.+.++.+.+.+.+.+.+.-.....  -..++.-+...+|.
T Consensus        90 kneeki~Elde~i~~~eed----ngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg--~KiDv~l~kiRlg~  163 (412)
T COG5187          90 KNEEKIEELDERIREKEED----NGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG--LKIDVFLCKIRLGL  163 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhc----ccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--cchhhHHHHHHHHH
Confidence            3345555666666555442    22344567889999999999999999999998877554432  33455556667787


Q ss_pred             HHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          424 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       424 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                      +|..+.-.++.++...   .+.++-.+.+......+|.  |.......++.+|..++-..+..+
T Consensus       164 ~y~d~~vV~e~lE~~~---~~iEkGgDWeRrNRyK~Y~--Gi~~m~~RnFkeAa~Ll~d~l~tF  222 (412)
T COG5187         164 IYGDRKVVEESLEVAD---DIIEKGGDWERRNRYKVYK--GIFKMMRRNFKEAAILLSDILPTF  222 (412)
T ss_pred             hhccHHHHHHHHHHHH---HHHHhCCCHHhhhhHHHHH--HHHHHHHHhhHHHHHHHHHHhccc
Confidence            7766554444444443   3333322222223333333  344445567788877777666544

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=91.48  E-value=4.5  Score=29.98  Aligned_cols=105  Identities=11%  Similarity=0.024  Sum_probs=59.7

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHHHHHhcCCCCc
Q 010063          379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS----KNFVEAERLLRICLDIMTKTVGPDDQ  454 (519)
Q Consensus       379 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~  454 (519)
                      +|.-+...|++-+|+++.++.+....+     +......+...|.++..+    .+.+-=..++.-+++-+.+... -.|
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~-----~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-Lsp   75 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGE-----DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-LSP   75 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccC-----CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-cCh
Confidence            466788999999999999998875422     222224455566666543    3444444555555554444322 134


Q ss_pred             chhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCC
Q 010063          455 SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSL  496 (519)
Q Consensus       455 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  496 (519)
                      ..+..++.+|       +.-....+|++++...++.+.-..|
T Consensus        76 ~~A~~L~~la-------~~l~s~~~Ykk~v~kak~~Lsv~~p  110 (111)
T PF04781_consen   76 DSAHSLFELA-------SQLGSVKYYKKAVKKAKRGLSVTNP  110 (111)
T ss_pred             hHHHHHHHHH-------HHhhhHHHHHHHHHHHHHHhcccCC
Confidence            4444444444       4445556666666666655444433

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=91.16  E-value=15  Score=35.58  Aligned_cols=209  Identities=13%  Similarity=0.076  Sum_probs=110.0

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC-chHHHHHHHHHHHHHHccc---cHHHHHHHHHHHHHHHHHhcCCCCH
Q 010063          167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD-EPLLDAILLHMGSMYSTLE---NYEKSMLVYQRVINVLESRYGKTSI  242 (519)
Q Consensus       167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~  242 (519)
                      ..+..+...|+...|...-.++..+.+..-.. .......++.++..-...-   .++.....+++.+.+..       .
T Consensus       291 ~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~-------~  363 (656)
T KOG1914|consen  291 EISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIED-------I  363 (656)
T ss_pred             HhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhc-------c
Confidence            44555566666655555444444444321100 0111112223332221111   24444555555554422       1


Q ss_pred             HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC
Q 010063          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (519)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (519)
                      ...-++..+-..-.+..-...|..+|.++-+.-.      .+....+...+- -|...++..-|...|+-.++.+     
T Consensus       364 ~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r------~~hhVfVa~A~m-Ey~cskD~~~AfrIFeLGLkkf-----  431 (656)
T KOG1914|consen  364 DLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKR------TRHHVFVAAALM-EYYCSKDKETAFRIFELGLKKF-----  431 (656)
T ss_pred             CCceehhHHHHHHHHhhhHHHHHHHHHHHhhccC------CcchhhHHHHHH-HHHhcCChhHHHHHHHHHHHhc-----
Confidence            1122333444444555667777777777755311      111222222222 2556788999999998887753     


Q ss_pred             CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063          323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (519)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (519)
                      ++.|.....   ....+...++-..|..+|++++..       ..+......+|..+-..-..-|+....+++-++-...
T Consensus       432 ~d~p~yv~~---YldfL~~lNdd~N~R~LFEr~l~s-------~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a  501 (656)
T KOG1914|consen  432 GDSPEYVLK---YLDFLSHLNDDNNARALFERVLTS-------VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA  501 (656)
T ss_pred             CCChHHHHH---HHHHHHHhCcchhHHHHHHHHHhc-------cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            234444433   345667788888999999998875       1223333456666666677778888777776665554


Q ss_pred             HH
Q 010063          403 TE  404 (519)
Q Consensus       403 ~~  404 (519)
                      +.
T Consensus       502 f~  503 (656)
T KOG1914|consen  502 FP  503 (656)
T ss_pred             cc
Confidence            44

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.16  E-value=5.1  Score=37.13  Aligned_cols=107  Identities=13%  Similarity=0.061  Sum_probs=73.3

Q ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 010063          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  365 (519)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  365 (519)
                      .-.++..+|.-|...|+++.|++.|-++.+.+...     ..+...+.++..+-...|+|..-..+..++..........
T Consensus       149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~-----khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~  223 (466)
T KOG0686|consen  149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSA-----KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENL  223 (466)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch-----HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhH
Confidence            45678889999999999999999999988877543     4677788888888889999988888888877652110000


Q ss_pred             CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010063          366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  399 (519)
Q Consensus       366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  399 (519)
                      ...-+....+..  |.+....++|..|..++-.+
T Consensus       224 ~q~v~~kl~C~a--gLa~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  224 AQEVPAKLKCAA--GLANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             HHhcCcchHHHH--HHHHHHHHHHHHHHHHHHhC
Confidence            111111223333  44445556888888777543

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=91.15  E-value=11  Score=33.91  Aligned_cols=130  Identities=15%  Similarity=0.169  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCC
Q 010063          223 MLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK  302 (519)
Q Consensus       223 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  302 (519)
                      ++-+.+.++-.++..|  ......++.+.|..|...|+-+.|.+.+.+..+-.-...  ..-+.......+|..|....-
T Consensus        84 i~eld~~iedaeenlG--E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~D~~l  159 (393)
T KOG0687|consen   84 IKELDEKIEDAEENLG--ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYLDHDL  159 (393)
T ss_pred             HHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhccHHH
Confidence            3444444444444333  246678899999999999999999999988876543332  223445566677777765443


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063          303 AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (519)
Q Consensus       303 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (519)
                      ..+.   .+++-.+.++  |.+....-..-..-|.......+|.+|-.+|-.++..+..
T Consensus       160 V~~~---iekak~liE~--GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS  213 (393)
T KOG0687|consen  160 VTES---IEKAKSLIEE--GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS  213 (393)
T ss_pred             HHHH---HHHHHHHHHh--CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence            3333   3333333333  2232222222333456666778899999998888876543

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=91.04  E-value=13  Score=34.41  Aligned_cols=128  Identities=12%  Similarity=0.098  Sum_probs=83.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHH
Q 010063          134 KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMY  213 (519)
Q Consensus       134 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  213 (519)
                      .+.-+.++++|++.          +|.....+..+-.......+.++..+-+++++...    +..+.+-..|...-...
T Consensus        47 ~E~klsilerAL~~----------np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~----~~~~~LW~~yL~~~q~~  112 (321)
T PF08424_consen   47 AERKLSILERALKH----------NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN----PGSPELWREYLDFRQSN  112 (321)
T ss_pred             HHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC----CCChHHHHHHHHHHHHH
Confidence            34556667777665          44555555555555556666666666677666543    33344433344433333


Q ss_pred             HccccHHHHHHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010063          214 STLENYEKSMLVYQRVINVLESRYGKT----------SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (519)
Q Consensus       214 ~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (519)
                      ...-.++.....|.+++..........          ......++..+.......|..+.|+..++-.+++.
T Consensus       113 ~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  113 FASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             hccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence            445578899999999988776653332          22456677788888899999999999999998873

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.88  E-value=5.8  Score=31.23  Aligned_cols=89  Identities=19%  Similarity=0.164  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (519)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (519)
                      ......+..+...-...++.+++...+...--+        .|.....-..-|.++...|+|.+|+..++...+      
T Consensus         7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~------   72 (153)
T TIGR02561         7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLS------   72 (153)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhc------
Confidence            344455555666666689999988877654433        566666777789999999999999999998765      


Q ss_pred             CCCChhHHHHHHHHHHHHHHCCCHH
Q 010063          322 GENDGRVGMAMCSLAHAKCANGNAE  346 (519)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~  346 (519)
                        +.+........++.++..+|+.+
T Consensus        73 --~~~~~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        73 --SAGAPPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             --cCCCchHHHHHHHHHHHhcCChH
Confidence              22333334445677777777653

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=90.77  E-value=0.66  Score=40.86  Aligned_cols=67  Identities=9%  Similarity=-0.020  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhh
Q 010063          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV  192 (519)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  192 (519)
                      .+....+..+....+.|+.++|..+|+.|+.+          .|..++++..+|...-...+.-+|..+|-+++.+.
T Consensus       114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlal----------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis  180 (472)
T KOG3824|consen  114 KEAILALKAAGRSRKDGKLEKAMTLFEHALAL----------APTNPQILIEMGQFREMHNEIVEADQCYVKALTIS  180 (472)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHhc----------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC
Confidence            34445677788899999999999999999999          88889999999999988899999999999988765

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.65  E-value=4.6  Score=37.42  Aligned_cols=108  Identities=7%  Similarity=-0.003  Sum_probs=75.0

Q ss_pred             ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHh-
Q 010063          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR-  236 (519)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-  236 (519)
                      ......++..+|.-|...|+++.|++.|.++.....    ........+.++..+-...|+|..-..+..+|....... 
T Consensus       146 KEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCT----s~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~  221 (466)
T KOG0686|consen  146 KESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCT----SAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE  221 (466)
T ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhc----chHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence            344567889999999999999999999999777763    335666678888888888999998888888887652100 


Q ss_pred             -cCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010063          237 -YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV  271 (519)
Q Consensus       237 -~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  271 (519)
                       ....-+....+.  -|.+....++|..|..++-.+
T Consensus       222 ~~~q~v~~kl~C~--agLa~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  222 NLAQEVPAKLKCA--AGLANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             hHHHhcCcchHHH--HHHHHHHHHHHHHHHHHHHhC
Confidence             001111123333  355555566888888887655

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=90.44  E-value=41  Score=39.24  Aligned_cols=110  Identities=18%  Similarity=0.184  Sum_probs=76.6

Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010063          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (519)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (519)
                      ....+.+|...|.+....|+++.|..++-+|.+..            ...+....|..+..+|+-..|+..+++.++...
T Consensus      1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r------------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR------------LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred             cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc------------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence            45688999999999999999999999888877652            134557889999999999999999999997654


Q ss_pred             HhhCCC---Chh------HHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHHH
Q 010063          405 KYKGKE---HPS------FVTHLLNLAASYSRSKNF--VEAERLLRICLDIMT  446 (519)
Q Consensus       405 ~~~~~~---~~~------~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~  446 (519)
                      ......   .|.      ...+...++......|++  ..-+.+|.++.++..
T Consensus      1734 ~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1734 PDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred             ccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence            321111   111      112344455555566663  334566777776543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=90.39  E-value=16  Score=34.58  Aligned_cols=138  Identities=13%  Similarity=0.073  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHH--HHHHH-HHHHHHHhcCChHHHHHHHHHHHhhhhhcC
Q 010063          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEE--VAILD-IIALGYVYIGDLKFVQSLLDMMSGIVDSLK  196 (519)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  196 (519)
                      .+...+-.+.+++++.+|...|.+..+....       .|..  .+++. .+-++| -+.+.+.-...+-...+.    .
T Consensus         8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~-------~~f~lkeEvl~grilnAf-fl~nld~Me~~l~~l~~~----~   75 (549)
T PF07079_consen    8 LLCFQGFILQKQKKFQESEKIFSKIYDEKES-------SPFLLKEEVLGGRILNAF-FLNNLDLMEKQLMELRQQ----F   75 (549)
T ss_pred             HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhc-------chHHHHHHHHhhHHHHHH-HHhhHHHHHHHHHHHHHh----c
Confidence            3667788899999999999999998776332       2211  12332 233333 344444444433333222    2


Q ss_pred             CCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCH----------HHHHHHHHHHHHHhhcCCHHHHHH
Q 010063          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI----------LLVTSLLGMAKVLGSIGRAKKAVE  266 (519)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----------~~~~~~~~la~~~~~~g~~~~A~~  266 (519)
                      +..+.   ...-.|...++++.+.+|++.+..-.+.....   ..+          .....-...+.++...|++.++..
T Consensus        76 ~~s~~---l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~---~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~  149 (549)
T PF07079_consen   76 GKSAY---LPLFKALVAYKQKEYRKALQALSVWKEQIKGT---ESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRA  149 (549)
T ss_pred             CCchH---HHHHHHHHHHHhhhHHHHHHHHHHHHhhhccc---ccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHH
Confidence            33333   24456777889999999998776554432211   111          011122346888999999999999


Q ss_pred             HHHHHHHHH
Q 010063          267 IYHRVITIL  275 (519)
Q Consensus       267 ~~~~al~~~  275 (519)
                      .+++.+...
T Consensus       150 iLn~i~~~l  158 (549)
T PF07079_consen  150 ILNRIIERL  158 (549)
T ss_pred             HHHHHHHHH
Confidence            999987654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=90.25  E-value=16  Score=34.23  Aligned_cols=118  Identities=10%  Similarity=0.031  Sum_probs=84.7

Q ss_pred             CcchHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCC-CCh--HH-----HHHHHHHHHHHHhcCChHHH
Q 010063          110 GMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGN-KGI--EE-----VAILDIIALGYVYIGDLKFV  181 (519)
Q Consensus       110 ~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~--~~-----~~~~~~l~~~~~~~g~~~~A  181 (519)
                      .....+..++..+..+...+++++|..|..-|..+|+++.+....+. ..+  +.     ..+-..+..||..+++.+-|
T Consensus       168 ~~PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlA  247 (569)
T PF15015_consen  168 FLPQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLA  247 (569)
T ss_pred             cChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchH
Confidence            33445556666777888899999999999999999999877532222 111  11     12335688999999999999


Q ss_pred             HHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Q 010063          182 QSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE  234 (519)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  234 (519)
                      +....+.+.+.       |....-+...+.++....+|.+|-..+--+.-++.
T Consensus       248 Lnh~hrsI~ln-------P~~frnHLrqAavfR~LeRy~eAarSamia~ymyw  293 (569)
T PF15015_consen  248 LNHSHRSINLN-------PSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYW  293 (569)
T ss_pred             HHHHhhhhhcC-------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98888776554       44444567778899999999999887766655443

>PRK14707 hypothetical protein; Provisional

Probab=89.96  E-value=43  Score=38.73  Aligned_cols=324  Identities=10%  Similarity=0.011  Sum_probs=160.9

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHH--HHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 010063          167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAIL--LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILL  244 (519)
Q Consensus       167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  244 (519)
                      .++.++-..++|.+...+-..+..+...+..+ +.....+  ..+++++....++.++-.+-.-+..+...+........
T Consensus       878 evantLNALSKWPd~~~C~~AA~aLA~rL~~d-~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~  956 (2710)
T PRK14707        878 GVVIVLNALSKWPNVPVCAAAASALAERLADE-PELRKALSAHRVATALNALSKWPDIPVCATAASALAERLSDDPDLRE  956 (2710)
T ss_pred             HHHHHHhhhccCCCcHHHHHHHHHHHHHHhcC-HHHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhccChhhhh
Confidence            45566666777777666666666665554322 3322222  24566666666666554444444444444322111111


Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL--PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (519)
                      ...-..+++++...+++.+...+-.-+..+.....  +.+....  .-..+++++....+|.++-.+-.-+..+...+- 
T Consensus       957 Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~--~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa- 1033 (2710)
T PRK14707        957 ALDASNLPQVLNALSKWPDVPAGGEVVDALAERLV--DEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLS- 1033 (2710)
T ss_pred             hccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHh--ccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhc-
Confidence            22223456666667777766555555555544432  1111111  223456666666677665555555555555442 


Q ss_pred             CCChhHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchH-HHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010063          323 ENDGRVG--MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI-MENMRIDLAELLHIVGRGQEGRELLEEC  399 (519)
Q Consensus       323 ~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a  399 (519)
                       ..+...  ..-..++.++....++.+...+-.-+..+....   ..+... ....-..++.++...-++.+.-.+-+-+
T Consensus      1034 -~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL---~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa 1109 (2710)
T PRK14707       1034 -NDPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERL---SDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAA 1109 (2710)
T ss_pred             -cCHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHh---hccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHH
Confidence             223322  223345666666667665544444444443321   111110 0111145667777777777777777777


Q ss_pred             HHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHH
Q 010063          400 LLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL  479 (519)
Q Consensus       400 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  479 (519)
                      +.+...+.....+........++.+.....++.....+=.-+..+..+......-.....-..++..+-...++.+.-.+
T Consensus      1110 ~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~~~cr~Aa~~LA~RL~~d~~Lr~a~~~Q~vAn~LNaLSKWp~~~ac 1189 (2710)
T PRK14707       1110 SALAKRLTDDAGLRHVFDPINVSQALNALSKWPGTQACESAIDVLAATLANAPGLRNALSAQGVAIALNALSKCLARPVC 1189 (2710)
T ss_pred             HHHHHHhccccchhccCCHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccchhhhhhcCHHHHHHHHHHhhcCcCcHHH
Confidence            77776664444433333334445555444444433333333333333332111111112224566777777777777777


Q ss_pred             HHHHHHHHHHhcCCCCCcc
Q 010063          480 VLEALYIREIAFGKDSLPV  498 (519)
Q Consensus       480 ~~~a~~~~~~~~~~~~~~~  498 (519)
                      -+-++.+....-+..+|.-
T Consensus      1190 ~~A~~~La~rlG~a~~P~r 1208 (2710)
T PRK14707       1190 RSAFVLLAERAGSAELPWR 1208 (2710)
T ss_pred             HHHHHHHHHhhcCCCCCch
Confidence            7777777766555555543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.93  E-value=12  Score=38.37  Aligned_cols=48  Identities=8%  Similarity=0.171  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          310 FSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       310 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      |.-|+.+++... .+.......+...|..++..|++++|...|-+++..
T Consensus       350 y~~Ai~LAk~~~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~  397 (933)
T KOG2114|consen  350 YKVAINLAKSQH-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF  397 (933)
T ss_pred             HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence            334444444431 223346667788899999999999999999988765

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=89.80  E-value=20  Score=34.74  Aligned_cols=157  Identities=18%  Similarity=0.167  Sum_probs=85.2

Q ss_pred             HhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010063          173 VYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA  252 (519)
Q Consensus       173 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  252 (519)
                      ...|+++++.+.... .++....    |  ......++..+..+|.++.|+.+.+.-                ...+   
T Consensus       272 v~~~d~~~v~~~i~~-~~ll~~i----~--~~~~~~i~~fL~~~G~~e~AL~~~~D~----------------~~rF---  325 (443)
T PF04053_consen  272 VLRGDFEEVLRMIAA-SNLLPNI----P--KDQGQSIARFLEKKGYPELALQFVTDP----------------DHRF---  325 (443)
T ss_dssp             HHTT-HHH-----HH-HHTGGG--------HHHHHHHHHHHHHTT-HHHHHHHSS-H----------------HHHH---
T ss_pred             HHcCChhhhhhhhhh-hhhcccC----C--hhHHHHHHHHHHHCCCHHHHHhhcCCh----------------HHHh---
Confidence            346788887666632 1222111    1  112556777888899888888755431                1122   


Q ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 010063          253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM  332 (519)
Q Consensus       253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  332 (519)
                      .+....|+.+.|.+..++.             .....|..||.....+|+++-|+..|+++-+                +
T Consensus       326 eLAl~lg~L~~A~~~a~~~-------------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------------~  376 (443)
T PF04053_consen  326 ELALQLGNLDIALEIAKEL-------------DDPEKWKQLGDEALRQGNIELAEECYQKAKD----------------F  376 (443)
T ss_dssp             HHHHHCT-HHHHHHHCCCC-------------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------------H
T ss_pred             HHHHhcCCHHHHHHHHHhc-------------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------------c
Confidence            3345678888876654322             2345888999999999999999999988643                3


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010063          333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  399 (519)
Q Consensus       333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  399 (519)
                      ..|..+|...|+.+.=.++...+...        .+.       +..-.++...|+.++.++++.++
T Consensus       377 ~~L~lLy~~~g~~~~L~kl~~~a~~~--------~~~-------n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  377 SGLLLLYSSTGDREKLSKLAKIAEER--------GDI-------NIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHHHT--------T-H-------HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             cccHHHHHHhCCHHHHHHHHHHHHHc--------cCH-------HHHHHHHHHcCCHHHHHHHHHHc
Confidence            44566777788865544444333321        111       11223455567777776666553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=89.79  E-value=7  Score=29.42  Aligned_cols=73  Identities=15%  Similarity=0.088  Sum_probs=57.7

Q ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010063          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (519)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (519)
                      +..+|....+.+++-.++-.|++|+.+.++....+..       ..+.+..++|..+..+|+.+-.++|++-|-+.....
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL   83 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL   83 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence            5678888899999999999999999998876322211       234567899999999999999999998887665444

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=89.66  E-value=6.2  Score=37.24  Aligned_cols=74  Identities=19%  Similarity=0.213  Sum_probs=53.9

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (519)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (519)
                      ++..+..++.-.|+|..|++.++..---.+.....-.+-...+++.+|.+|..+++|.+|++.|...+-...+.
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~  197 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT  197 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45577888999999999998876532111111222234556788999999999999999999999988765443

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=89.43  E-value=10  Score=30.93  Aligned_cols=164  Identities=8%  Similarity=0.032  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHH-hcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHH-----ccccHHHHHHHHHHHHHHHH
Q 010063          161 EVAILDIIALGYV-YIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYS-----TLENYEKSMLVYQRVINVLE  234 (519)
Q Consensus       161 ~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~al~~~~  234 (519)
                      .++....||..+- -+.+|++|..+|..        .-+....+...+.+|..+.     ..+++..|++.+..+-+.  
T Consensus        33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~--------nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--  102 (248)
T KOG4014|consen   33 RPESCQLLGDYLEGIQKNFQAAVKVFKK--------NCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--  102 (248)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHh--------cccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--
Confidence            3444555554432 23455555555543        1222233344566666554     345788888888877652  


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHhhc-----CC--HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh--------
Q 010063          235 SRYGKTSILLVTSLLGMAKVLGSI-----GR--AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK--------  299 (519)
Q Consensus       235 ~~~~~~~~~~~~~~~~la~~~~~~-----g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--------  299 (519)
                           +.   ..+..++|.++..-     ++  ..+|++++.++-++          ....+.++|...|..        
T Consensus       103 -----n~---~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t~  164 (248)
T KOG4014|consen  103 -----NI---PQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKTN  164 (248)
T ss_pred             -----CC---HHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhccc
Confidence                 22   34555666666543     23  67788888887654          112333344433332        


Q ss_pred             ----------------CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHH
Q 010063          300 ----------------EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVI  359 (519)
Q Consensus       300 ----------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~  359 (519)
                                      ..+.+.|.++.-+|-++          ....+..|+.+.|-.    -.+.++|..+-.+|.++.
T Consensus       165 ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel----------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~  234 (248)
T KOG4014|consen  165 APGEGKPLDRAELGSLSKDMDKALQFAIKACEL----------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM  234 (248)
T ss_pred             CCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc----------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence                            23445566555555543          233456677776643    246788999999998887


Q ss_pred             Hhh
Q 010063          360 KDS  362 (519)
Q Consensus       360 ~~~  362 (519)
                      ++.
T Consensus       235 ~e~  237 (248)
T KOG4014|consen  235 EEL  237 (248)
T ss_pred             HHH
Confidence            764

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=89.33  E-value=7  Score=36.43  Aligned_cols=104  Identities=10%  Similarity=0.062  Sum_probs=77.2

Q ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCC---H-------HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010063          207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS---I-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (519)
Q Consensus       207 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (519)
                      ..=|..++++++|..|.--|..+++++.+......   +       ....+...+..||..+++.+-|+.+..+.+.+  
T Consensus       180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l--  257 (569)
T PF15015_consen  180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL--  257 (569)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc--
Confidence            34466778889999999999999998766422111   1       12234557889999999999999999888875  


Q ss_pred             HhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 010063          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT  318 (519)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  318 (519)
                            +|....-+..-|.++..+.+|.+|.+.+--+.-++-
T Consensus       258 ------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymyw  293 (569)
T PF15015_consen  258 ------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYW  293 (569)
T ss_pred             ------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  566666677778889999999999887766655553

>PRK10941 hypothetical protein; Provisional

Probab=89.32  E-value=8.1  Score=34.40  Aligned_cols=70  Identities=13%  Similarity=0.030  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      +.+.-..+...++++.|+.+.+..+.+          .|+.+.-+...|.+|.++|.+..|..-++..++..    ++.|
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l----------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~----P~dp  249 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQF----------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC----PEDP  249 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC----CCch
Confidence            444446779999999999999999998          77777888899999999999999999998887765    4445


Q ss_pred             HHHH
Q 010063          201 LLDA  204 (519)
Q Consensus       201 ~~~~  204 (519)
                      ....
T Consensus       250 ~a~~  253 (269)
T PRK10941        250 ISEM  253 (269)
T ss_pred             hHHH
Confidence            4433

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=88.97  E-value=16  Score=32.59  Aligned_cols=75  Identities=20%  Similarity=0.316  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC
Q 010063          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (519)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (519)
                      ....++..++..+...|+++.+...+++.+..        +|..-..+..+-..|...|+...|+..|++.-+...+-.|
T Consensus       151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg  222 (280)
T COG3629         151 LFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG  222 (280)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence            34678889999999999999999999999886        6666778888999999999999999999998886555544


Q ss_pred             CCC
Q 010063          323 END  325 (519)
Q Consensus       323 ~~~  325 (519)
                      .+.
T Consensus       223 i~P  225 (280)
T COG3629         223 IDP  225 (280)
T ss_pred             CCc
Confidence            443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=88.70  E-value=9.4  Score=34.03  Aligned_cols=77  Identities=14%  Similarity=0.159  Sum_probs=61.9

Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcC
Q 010063          159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG  238 (519)
Q Consensus       159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  238 (519)
                      .....++..++..+...|+++.+...+++.+...       |..-..+..+-..|...|+...|+..|++.-.......|
T Consensus       150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-------p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg  222 (280)
T COG3629         150 ELFIKALTKLAEALIACGRADAVIEHLERLIELD-------PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG  222 (280)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-------ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence            3456788899999999999999999999887654       555556888899999999999999999998886555455


Q ss_pred             CCCH
Q 010063          239 KTSI  242 (519)
Q Consensus       239 ~~~~  242 (519)
                      .+..
T Consensus       223 i~P~  226 (280)
T COG3629         223 IDPA  226 (280)
T ss_pred             CCcc
Confidence            5433

>PRK10941 hypothetical protein; Provisional

Probab=88.67  E-value=5.4  Score=35.53  Aligned_cols=80  Identities=13%  Similarity=0.009  Sum_probs=61.7

Q ss_pred             chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Q 010063          369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  448 (519)
Q Consensus       369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (519)
                      ...+...+.++-.+|.+.++++.|+.+.+..+.+.     +++   ..-+...|.+|.+.|.+..|..-++.-++..   
T Consensus       177 ~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~-----P~d---p~e~RDRGll~~qL~c~~~A~~DL~~fl~~~---  245 (269)
T PRK10941        177 IEVIRKLLDTLKAALMEEKQMELALRASEALLQFD-----PED---PYEIRDRGLIYAQLDCEHVALSDLSYFVEQC---  245 (269)
T ss_pred             HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC---
Confidence            34556778899999999999999999999988753     333   3456678999999999999999999888743   


Q ss_pred             cCCCCcchhHHHH
Q 010063          449 VGPDDQSISFPML  461 (519)
Q Consensus       449 ~~~~~~~~~~~~~  461 (519)
                        |+.|.......
T Consensus       246 --P~dp~a~~ik~  256 (269)
T PRK10941        246 --PEDPISEMIRA  256 (269)
T ss_pred             --CCchhHHHHHH
Confidence              55555544333

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=88.44  E-value=23  Score=33.61  Aligned_cols=140  Identities=17%  Similarity=0.076  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH--HhcCChHHHHHHHHHHHhhhhhcC
Q 010063          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGY--VYIGDLKFVQSLLDMMSGIVDSLK  196 (519)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~  196 (519)
                      ..-...+..+++.++|..|.+.++.....    +   +.... ...+..+..+|  ....++++|.+.++........+ 
T Consensus       132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r----l---~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l-  202 (379)
T PF09670_consen  132 DREWRRAKELFNRYDYGAAARILEELLRR----L---PGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL-  202 (379)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHh----C---Cchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh-
Confidence            34667888999999999999999998764    1   11111 34455555544  66888999999998866542110 


Q ss_pred             CCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010063          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (519)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (519)
                         ......+..+..       .-++...+.....................+..-|.--...|+|+.|...+-+++++.-
T Consensus       203 ---~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~  272 (379)
T PF09670_consen  203 ---NQEREGLKELVE-------VLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLA  272 (379)
T ss_pred             ---HhHHHHHHHHHH-------HHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence               000111111111       1122222222222111100000122333333344444568999999999999998754


Q ss_pred             H
Q 010063          277 L  277 (519)
Q Consensus       277 ~  277 (519)
                      +
T Consensus       273 Q  273 (379)
T PF09670_consen  273 Q  273 (379)
T ss_pred             H
Confidence            3

>PF12854 PPR_1: PPR repeat

Probab=88.25  E-value=1.2  Score=24.87  Aligned_cols=26  Identities=27%  Similarity=0.565  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHH
Q 010063          330 MAMCSLAHAKCANGNAEEAVELYKKA  355 (519)
Q Consensus       330 ~~~~~la~~~~~~g~~~~A~~~~~~a  355 (519)
                      .+|+.+...+.+.|+.++|.+++++.
T Consensus         8 ~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    8 VTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            48899999999999999999998863

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=88.17  E-value=20  Score=40.07  Aligned_cols=155  Identities=15%  Similarity=0.077  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCC-------------------
Q 010063          328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR-------------------  388 (519)
Q Consensus       328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------  388 (519)
                      .++....+|.++...|++.+|+..|.+|+...+.    ..|+-+.+.++..++.+..-.+.                   
T Consensus       241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~----~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~  316 (1185)
T PF08626_consen  241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKS----SNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISS  316 (1185)
T ss_pred             hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhh----cCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCC
Confidence            3456677899999999999999999999999887    46777777777666554432110                   


Q ss_pred             -------------------------------------hHHHHHHHHHHHHHHHHhh---CCCChh--HHHHHHHHHHHHH
Q 010063          389 -------------------------------------GQEGRELLEECLLITEKYK---GKEHPS--FVTHLLNLAASYS  426 (519)
Q Consensus       389 -------------------------------------~~~A~~~~~~al~~~~~~~---~~~~~~--~~~~~~~la~~~~  426 (519)
                                                           ...-.+.+++++..+.+..   .+..|.  ..++...++.++.
T Consensus       317 ~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~  396 (1185)
T PF08626_consen  317 STSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLV  396 (1185)
T ss_pred             ccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHH
Confidence                                                 1111234555555555442   111232  3456666777776


Q ss_pred             hcc--------------------CHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063          427 RSK--------------------NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (519)
Q Consensus       427 ~~g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (519)
                      ...                    ...++.+...+++.+....  -...+....+..+|.+|...|-..++.-+.+.++..
T Consensus       397 ~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~--l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~  474 (1185)
T PF08626_consen  397 AQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKD--LSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ  474 (1185)
T ss_pred             HhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhh--CCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            666                    6778888888888765432  234566788999999999999999988888888776


Q ss_pred             HH
Q 010063          487 RE  488 (519)
Q Consensus       487 ~~  488 (519)
                      .-
T Consensus       475 ~~  476 (1185)
T PF08626_consen  475 LV  476 (1185)
T ss_pred             hc
Confidence            63

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=87.81  E-value=1.3  Score=41.52  Aligned_cols=72  Identities=15%  Similarity=0.117  Sum_probs=59.9

Q ss_pred             HHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH
Q 010063          439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWF  512 (519)
Q Consensus       439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  512 (519)
                      -+++-+.++++|+.||++.......|-+|..+|+++.-+++++-|+++.++.+.|-+|-+  +.++...+..+.
T Consensus       319 mqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT--~ssllsFaelFS  390 (615)
T KOG0508|consen  319 MQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMT--ASSLLSFAELFS  390 (615)
T ss_pred             HHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCccc--HHHHHHHHHHHH
Confidence            467778899999999998766667788999999999999999999999999999888866  455556666553

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.54  E-value=6.4  Score=26.87  Aligned_cols=43  Identities=28%  Similarity=0.250  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchH
Q 010063          329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI  371 (519)
Q Consensus       329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  371 (519)
                      +..+...|.-+-..|++.+|+.+|+++++.+.+.....||.+.
T Consensus         6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~   48 (75)
T cd02682           6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT   48 (75)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence            3445566777788999999999999999988776444455444

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=87.51  E-value=17  Score=32.34  Aligned_cols=75  Identities=15%  Similarity=0.169  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (519)
                      ...+...+..|...|.+.+|+.+.++++.+        +|..-..+..+-.++...|+--.+.+.|++.-+..+.-+|-+
T Consensus       279 ~kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~  350 (361)
T COG3947         279 MKLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGID  350 (361)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCC
Confidence            344556688899999999999999999987        666677888888999999999999999998887776666555


Q ss_pred             Chh
Q 010063          325 DGR  327 (519)
Q Consensus       325 ~~~  327 (519)
                      ..+
T Consensus       351 vdd  353 (361)
T COG3947         351 VDD  353 (361)
T ss_pred             cch
Confidence            443

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=87.44  E-value=25  Score=39.23  Aligned_cols=156  Identities=17%  Similarity=0.119  Sum_probs=98.7

Q ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH---CC-------------------
Q 010063          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA---NG-------------------  343 (519)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g-------------------  343 (519)
                      .......+|..+...|++.+|+..|.+|+...+..  .++...+.++-.++.+..-   .|                   
T Consensus       241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~  318 (1185)
T PF08626_consen  241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSST  318 (1185)
T ss_pred             hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCcc
Confidence            34566778999999999999999999999998875  2444455555544432211   00                   


Q ss_pred             ----------------------------------CHHHHHHHHHHHHHHHHhhcc--C-CCCchHHHHHHHHHHHHHHHc
Q 010063          344 ----------------------------------NAEEAVELYKKALRVIKDSNY--M-SLDDSIMENMRIDLAELLHIV  386 (519)
Q Consensus       344 ----------------------------------~~~~A~~~~~~al~~~~~~~~--~-~~~~~~~~~~~~~la~~~~~~  386 (519)
                                                        -.+.-.+.+++++..+.+...  . .........+...++..+...
T Consensus       319 ~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~  398 (1185)
T PF08626_consen  319 SSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQ  398 (1185)
T ss_pred             CccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHh
Confidence                                              011122334444444443210  0 011223345556777777777


Q ss_pred             C--------------------ChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010063          387 G--------------------RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (519)
Q Consensus       387 g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (519)
                      .                    .-.++.+...+++.......  ...+....+..+|.+|...|-..++.-+++.++...
T Consensus       399 ~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~  475 (1185)
T PF08626_consen  399 HLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL  475 (1185)
T ss_pred             hcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence            7                    67778888888877654322  345667889999999999998888777777666544

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.06  E-value=7.6  Score=26.52  Aligned_cols=42  Identities=14%  Similarity=0.056  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI  159 (519)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  159 (519)
                      ...+...|..+-..|++.+|+.+|+++++.+.+.....++.+
T Consensus         6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~   47 (75)
T cd02682           6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSP   47 (75)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChH
Confidence            445677888889999999999999999999888765444444

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PRK14707 hypothetical protein; Provisional

Probab=86.92  E-value=68  Score=37.32  Aligned_cols=313  Identities=9%  Similarity=0.001  Sum_probs=163.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHH--HHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 010063          167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAIL--LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILL  244 (519)
Q Consensus       167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  244 (519)
                      .+++++-..++|.++..+-..+..+...+..+. .....+  ..+++++...+++.+...+-.-+..+...+........
T Consensus       836 ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e~-~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~Lrq  914 (2710)
T PRK14707        836 HVATVLNAMSKWPDNAVCAAAAGAMAERLADEP-ELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPELRK  914 (2710)
T ss_pred             HHHHHHHHhccCCCchHHHHHHHHHHHHHhcCh-hhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHHHHh
Confidence            456677777788777766666666655543332 222222  24566666677777666666666666655422111111


Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP--LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (519)
                      ...-..+++++-...++.++-.+-.-+..+......  .+.....  -..+++++...++|.+...+-.-+..+..... 
T Consensus       915 al~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~--d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~-  991 (2710)
T PRK14707        915 ALSAHRVATALNALSKWPDIPVCATAASALAERLSD--DPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLV-  991 (2710)
T ss_pred             hccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhcc--ChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHh-
Confidence            222335566666666666654444444444444331  2222222  23466677777777776665555555554432 


Q ss_pred             CCChhH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHH--HHHHHHHHHHHHcCChHHHHHHHHH
Q 010063          323 ENDGRV--GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME--NMRIDLAELLHIVGRGQEGRELLEE  398 (519)
Q Consensus       323 ~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~  398 (519)
                       +++..  ...-..+++++....++.++-.+-.-+..+....   ..+ +...  ..-..++.++....+|.+.-.+-.-
T Consensus       992 -~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rL---a~e-p~L~~amdaQ~lan~LNALSKWPde~~Cr~A 1066 (2710)
T PRK14707        992 -DEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARL---SND-PGLCKALSSQGLTTVLNALCKWPEMPVCLAA 1066 (2710)
T ss_pred             -ccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHh---ccC-HhhhhhcchHHHHHHHHhhccCCCchhHHHH
Confidence             12221  1122345666666667765555555555554442   111 1111  1114567777777777765555444


Q ss_pred             HHHHHHHhhCCCChhH--HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHH
Q 010063          399 CLLITEKYKGKEHPSF--VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA  476 (519)
Q Consensus       399 al~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  476 (519)
                      +..+...+.  .++..  ...-..++.++...-++.+.-.+-+-++.+...+.+..++........++.+.-...++...
T Consensus      1067 a~aLA~rL~--~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~ 1144 (2710)
T PRK14707       1067 ASALAERLS--DDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWPGT 1144 (2710)
T ss_pred             HHHHHHHhh--ccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCCCc
Confidence            444444332  12221  11223456666666777777777777777777765544444444445666666666666554


Q ss_pred             HHHHHHHHHHHHHh
Q 010063          477 EKLVLEALYIREIA  490 (519)
Q Consensus       477 ~~~~~~a~~~~~~~  490 (519)
                      -.+-.-+..+...+
T Consensus      1145 ~~cr~Aa~~LA~RL 1158 (2710)
T PRK14707       1145 QACESAIDVLAATL 1158 (2710)
T ss_pred             hHHHHHHHHHHHHh
Confidence            44444444444443

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=86.75  E-value=5.2  Score=42.43  Aligned_cols=111  Identities=16%  Similarity=0.061  Sum_probs=70.7

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 010063          337 HAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVT  416 (519)
Q Consensus       337 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  416 (519)
                      +.+...+.|+.|+..|++.-..+       |....-..+.+..|..+..+-.-..-.+.+.+|+..++...+  .+...-
T Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  553 (932)
T PRK13184        483 DAFLAEKLYDQALIFYRRIRESF-------PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGAPL  553 (932)
T ss_pred             HHHHhhHHHHHHHHHHHHHhhcC-------CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCCch
Confidence            34555556666666666654432       222222345567777776554333333677778877777653  333344


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHH
Q 010063          417 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML  461 (519)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  461 (519)
                      -|...|.+|.++|++++-+++|.-|++-+     +.||.......
T Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  593 (932)
T PRK13184        554 EYLGKALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRLRD  593 (932)
T ss_pred             HHHhHHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHHHH
Confidence            56677889999999999999999998854     56777655433

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=86.75  E-value=0.56  Score=43.80  Aligned_cols=72  Identities=24%  Similarity=0.351  Sum_probs=63.0

Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh
Q 010063          398 ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH  469 (519)
Q Consensus       398 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  469 (519)
                      +++-+.+.++|+.||++.......|-+|...|+++..+++++-|+++.++.+.|-.|.+...+...+.++..
T Consensus       320 qaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~  391 (615)
T KOG0508|consen  320 QALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF  391 (615)
T ss_pred             HHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence            566777888999999988777778999999999999999999999999999999999888888887777654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=86.47  E-value=21  Score=34.57  Aligned_cols=126  Identities=19%  Similarity=0.139  Sum_probs=70.6

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 010063          215 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG  294 (519)
Q Consensus       215 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  294 (519)
                      ..|+++++.+..... ++..     .-|  ..-...++..+..+|.++.|+...+.-                ...+.| 
T Consensus       273 ~~~d~~~v~~~i~~~-~ll~-----~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~----------------~~rFeL-  327 (443)
T PF04053_consen  273 LRGDFEEVLRMIAAS-NLLP-----NIP--KDQGQSIARFLEKKGYPELALQFVTDP----------------DHRFEL-  327 (443)
T ss_dssp             HTT-HHH-----HHH-HTGG-----G----HHHHHHHHHHHHHTT-HHHHHHHSS-H----------------HHHHHH-
T ss_pred             HcCChhhhhhhhhhh-hhcc-----cCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh----------------HHHhHH-
Confidence            457777766655311 1111     111  222456677778888887776654322                222333 


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHH
Q 010063          295 SLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN  374 (519)
Q Consensus       295 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  374 (519)
                        ..+.|+.+.|.+..++.             .....|..||.....+|+++-|+++|+++-+.                
T Consensus       328 --Al~lg~L~~A~~~a~~~-------------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~----------------  376 (443)
T PF04053_consen  328 --ALQLGNLDIALEIAKEL-------------DDPEKWKQLGDEALRQGNIELAEECYQKAKDF----------------  376 (443)
T ss_dssp             --HHHCT-HHHHHHHCCCC-------------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H----------------
T ss_pred             --HHhcCCHHHHHHHHHhc-------------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc----------------
Confidence              45788888887654332             23347889999999999999999999886443                


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHH
Q 010063          375 MRIDLAELLHIVGRGQEGRELLEE  398 (519)
Q Consensus       375 ~~~~la~~~~~~g~~~~A~~~~~~  398 (519)
                        ..|..+|...|+.+.=.++.+.
T Consensus       377 --~~L~lLy~~~g~~~~L~kl~~~  398 (443)
T PF04053_consen  377 --SGLLLLYSSTGDREKLSKLAKI  398 (443)
T ss_dssp             --HHHHHHHHHCT-HHHHHHHHHH
T ss_pred             --cccHHHHHHhCCHHHHHHHHHH
Confidence              4466777888886554444433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.46  E-value=1.6  Score=26.21  Aligned_cols=25  Identities=20%  Similarity=0.227  Sum_probs=23.1

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHH
Q 010063          461 LHLGITLYHLNRDKEAEKLVLEALY  485 (519)
Q Consensus       461 ~~la~~~~~~g~~~~A~~~~~~a~~  485 (519)
                      ..||.+|..+|+.+.|.+.+++.+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5789999999999999999999985

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=86.12  E-value=32  Score=32.72  Aligned_cols=63  Identities=10%  Similarity=-0.066  Sum_probs=44.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHH--HHHHHccccHHHHHHHHHHHHHH
Q 010063          165 LDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM--GSMYSTLENYEKSMLVYQRVINV  232 (519)
Q Consensus       165 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~al~~  232 (519)
                      ....+...+..++|..|...++.+...   +++...  ...+..+  |..++...++.+|.+.++..+..
T Consensus       134 ~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  134 EWRRAKELFNRYDYGAAARILEELLRR---LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            345566678999999999999987764   222222  2334444  55567788999999999987664

>PF13041 PPR_2: PPR repeat family

Probab=86.11  E-value=4.5  Score=24.91  Aligned_cols=28  Identities=21%  Similarity=0.332  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063          416 THLLNLAASYSRSKNFVEAERLLRICLD  443 (519)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (519)
                      .+|+.+-..|.+.|++++|.++|++..+
T Consensus         4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~   31 (50)
T PF13041_consen    4 VTYNTLISGYCKAGKFEEALKLFKEMKK   31 (50)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            4678888999999999999999999886

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.01  E-value=1.6  Score=26.12  Aligned_cols=25  Identities=40%  Similarity=0.489  Sum_probs=23.1

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHH
Q 010063          377 IDLAELLHIVGRGQEGRELLEECLL  401 (519)
Q Consensus       377 ~~la~~~~~~g~~~~A~~~~~~al~  401 (519)
                      .++|..|...|+.+.|.+.+++.+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5799999999999999999999875

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=85.67  E-value=4.2  Score=37.03  Aligned_cols=70  Identities=19%  Similarity=0.160  Sum_probs=60.3

Q ss_pred             hHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHH
Q 010063          113 DFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSL  184 (519)
Q Consensus       113 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  184 (519)
                      +....+..++..++..+..+++++|...|..|..++.+.+  +..+.+...+++..|..++..++.+...-.
T Consensus        36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~--Ge~~~e~~eal~~YGkslLela~~e~~VL~  105 (400)
T KOG4563|consen   36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIY--GEKHLETFEALFLYGKSLLELAKEESQVLG  105 (400)
T ss_pred             hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3456777899999999999999999999999999999887  677888899999999999998887766543

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=85.33  E-value=1.9  Score=40.50  Aligned_cols=74  Identities=16%  Similarity=0.173  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhc
Q 010063          376 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV  449 (519)
Q Consensus       376 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  449 (519)
                      ...|.+++.-.|||..|++.++..---....+..-.+-...+++.+|-+|..+++|.+|+..|...+-...+..
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k  198 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK  198 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46678889999999999998765321111122223344567888999999999999999999999988766553

>PF12854 PPR_1: PPR repeat

Probab=85.28  E-value=2.4  Score=23.69  Aligned_cols=28  Identities=21%  Similarity=0.271  Sum_probs=24.7

Q ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010063          286 LVLPLFSLGSLFIKEGKAVDAESVFSRI  313 (519)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~a  313 (519)
                      ...+|+.+...|.+.|+.++|.+++++.
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            3678999999999999999999998763

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=84.98  E-value=2  Score=36.33  Aligned_cols=56  Identities=13%  Similarity=0.021  Sum_probs=51.1

Q ss_pred             HHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhh
Q 010063          127 SMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV  192 (519)
Q Consensus       127 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  192 (519)
                      .....|+.+.|.++|.+++++          .|+....|+.+|......|+++.|...|++.+++.
T Consensus         4 ~~~~~~D~~aaaely~qal~l----------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld   59 (287)
T COG4976           4 MLAESGDAEAAAELYNQALEL----------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD   59 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhc----------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence            346789999999999999998          88899999999999999999999999999988875

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=83.46  E-value=23  Score=29.02  Aligned_cols=150  Identities=13%  Similarity=0.049  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHH
Q 010063          310 FSRILKIYTKVYGENDGRVGMAMCSLAHAKC-----ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH  384 (519)
Q Consensus       310 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~  384 (519)
                      |+.|.++++....  ......+.+.+|..+.     ..+++..|++.+..+-+.         +.   ..+-.++|.++.
T Consensus        51 F~~A~kv~K~nCd--en~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~---------n~---~~aC~~~gLl~~  116 (248)
T KOG4014|consen   51 FQAAVKVFKKNCD--ENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA---------NI---PQACRYLGLLHW  116 (248)
T ss_pred             HHHHHHHHHhccc--ccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc---------CC---HHHHhhhhhhhc
Confidence            4444444444322  2223344555555443     245788888888877653         11   123355666655


Q ss_pred             Hc-----CC--hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH------------------------hccCHHH
Q 010063          385 IV-----GR--GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS------------------------RSKNFVE  433 (519)
Q Consensus       385 ~~-----g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~------------------------~~g~~~~  433 (519)
                      ..     ++  ..+|++++.++-++-          ...+.+.|...|.                        -..+.++
T Consensus       117 ~g~~~r~~dpd~~Ka~~y~traCdl~----------~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdk  186 (248)
T KOG4014|consen  117 NGEKDRKADPDSEKAERYMTRACDLE----------DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDK  186 (248)
T ss_pred             cCcCCccCCCCcHHHHHHHHHhccCC----------CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHH
Confidence            32     23  567888888775431          1122333333332                        2345556


Q ss_pred             HHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh----cCChHHHHHHHHHHHHHHHHhcCC
Q 010063          434 AERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYIREIAFGK  493 (519)
Q Consensus       434 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~  493 (519)
                      |.++--+|-++          ....+..++.+.|..    -.+-++|..+-.+|.++.+++...
T Consensus       187 a~qfa~kACel----------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~k~  240 (248)
T KOG4014|consen  187 ALQFAIKACEL----------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELRKN  240 (248)
T ss_pred             HHHHHHHHHhc----------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHHcC
Confidence            66655555542          234556677777764    246789999999999999887543

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=82.86  E-value=22  Score=31.65  Aligned_cols=74  Identities=22%  Similarity=0.232  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 010063          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  410 (519)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  410 (519)
                      .+...+..|...|.+.+|+++.++++..          ++.....+..+-.++...|+--.+...|++.-...+..+|-+
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltl----------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~  350 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTL----------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGID  350 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhc----------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCC
Confidence            4455677889999999999999999887          344445567788899999999999999998877776666654


Q ss_pred             ChhH
Q 010063          411 HPSF  414 (519)
Q Consensus       411 ~~~~  414 (519)
                      ..+.
T Consensus       351 vdds  354 (361)
T COG3947         351 VDDS  354 (361)
T ss_pred             cchh
Confidence            4433

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=82.51  E-value=15  Score=34.56  Aligned_cols=116  Identities=17%  Similarity=0.015  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC---CCChhHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHh
Q 010063          375 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKG---KEHPSFVTHLLNLAASYSRSKN---FVEAERLLRICLDIMTKT  448 (519)
Q Consensus       375 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~  448 (519)
                      .+...|++......|++|+.++-.|-+.+.....   +...+++..-..+.+||+.+.+   .+.|..-+..+-.-+...
T Consensus       165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s  244 (568)
T KOG2561|consen  165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS  244 (568)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence            3455666777777788887777666554432210   0111222333445677777665   345555555554444444


Q ss_pred             c-----------CCCCcchh---HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 010063          449 V-----------GPDDQSIS---FPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  490 (519)
Q Consensus       449 ~-----------~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  490 (519)
                      +           |+..|+.+   ..+..-|.+.+.+|+-++|.++++.+.....+.
T Consensus       245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el  300 (568)
T KOG2561|consen  245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL  300 (568)
T ss_pred             hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence            3           34445543   333445889999999999999999998877654

>PF13041 PPR_2: PPR repeat family

Probab=82.46  E-value=7.2  Score=23.96  Aligned_cols=30  Identities=10%  Similarity=0.200  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (519)
                      ..+++.+-..|.+.|++++|.++|++..+.
T Consensus         3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~   32 (50)
T PF13041_consen    3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR   32 (50)
T ss_pred             hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence            456788889999999999999999998754

>KOG3024 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.34  E-value=31  Score=30.59  Aligned_cols=109  Identities=12%  Similarity=0.044  Sum_probs=67.7

Q ss_pred             hHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHH---HHHHHHHHhcCChHHH-HHHHHHH
Q 010063          113 DFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAIL---DIIALGYVYIGDLKFV-QSLLDMM  188 (519)
Q Consensus       113 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A-~~~~~~~  188 (519)
                      ...+....+++.+..+++.++...|.++.-..++...+.        +.+...   -+++......+.-+.. ..+.+.+
T Consensus        41 ~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka--------~~ad~~~~~anl~~ll~e~~~~eper~~~v~ra  112 (312)
T KOG3024|consen   41 AHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKA--------EVADSLLKVANLAELLGEADPSEPERKTFVRRA  112 (312)
T ss_pred             hhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHH--------HhhHhHHHHHHHHHHHhhcCCCccHHHHHHHHH
Confidence            334455667777888888888888877777776665442        112222   2334444333333333 3455667


Q ss_pred             HhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHH
Q 010063          189 SGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRV  229 (519)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  229 (519)
                      +++....+.........+..+|..++..+++.+|..+|-.+
T Consensus       113 ikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll~  153 (312)
T KOG3024|consen  113 IKWSKEFGEGKYGHPELHALLADKLWTEDNVEEARRHFLLS  153 (312)
T ss_pred             HHHHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhhc
Confidence            77776654433334455788999999999999999888643

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.24  E-value=14  Score=25.44  Aligned_cols=35  Identities=6%  Similarity=-0.034  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH
Q 010063          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQ  151 (519)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~  151 (519)
                      ....+...|...=..|+|++|+.+|..+++.+...
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~   39 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYA   39 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence            34457778888899999999999999999987764

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=81.95  E-value=15  Score=34.49  Aligned_cols=117  Identities=13%  Similarity=-0.011  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc--cCCCCchHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHH
Q 010063          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSN--YMSLDDSIMENMRIDLAELLHIVGR---GQEGRELLEECLLITEK  405 (519)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~  405 (519)
                      .+...|...+....|++|+.++-.|-+.+....  .+.. -..++..-..+.+||+...+   .+.|..-+..+-+-+..
T Consensus       165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~-VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~  243 (568)
T KOG2561|consen  165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLEL-VDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFER  243 (568)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHh-hcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhh
Confidence            345556666777777777777776666554320  0000 01112233556778887765   34566555555544444


Q ss_pred             hhC-----------CCChhHH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Q 010063          406 YKG-----------KEHPSFV---THLLNLAASYSRSKNFVEAERLLRICLDIMTKT  448 (519)
Q Consensus       406 ~~~-----------~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (519)
                      .+|           +..|..+   ..+...|.+.+.+|+-++|.++++.+.....+.
T Consensus       244 syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el  300 (568)
T KOG2561|consen  244 SYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL  300 (568)
T ss_pred             hhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence            433           3445443   344566889999999999999999998876654

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.87  E-value=14  Score=25.44  Aligned_cols=36  Identities=11%  Similarity=0.148  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHh
Q 010063          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQIN  153 (519)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~  153 (519)
                      ...++..|..+-..|+|++|+.+|.++++.+.....
T Consensus         6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk   41 (77)
T cd02683           6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLK   41 (77)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh
Confidence            345777888889999999999999999999877653

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]

Probab=81.77  E-value=29  Score=28.84  Aligned_cols=132  Identities=17%  Similarity=0.155  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHH
Q 010063          142 QANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEK  221 (519)
Q Consensus       142 ~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  221 (519)
                      ++++.+.++..           -+...+......|++++|...++++.+....+...-..... ++.-|.+-.....|.+
T Consensus        20 EE~l~lsRei~-----------r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pe-l~~ag~~~~a~QEyvE   87 (204)
T COG2178          20 EEALKLSREIV-----------RLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPE-LYFAGFVTTALQEYVE   87 (204)
T ss_pred             HHHHHHHHHHH-----------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHhhcchHHHHHH


Q ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----------HhhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063          222 SMLVYQRVINVLESRYGKTSILLVTSLLGMAKV----------LGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (519)
Q Consensus       222 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~----------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (519)
                      |..++.-...-.......-..........+|.+          ....|++++|...++-.-.++.....-+.|.
T Consensus        88 A~~l~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY~~Lm~fdyP~  161 (204)
T COG2178          88 ATLLYSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYEELMEFDYPK  161 (204)
T ss_pred             HHHHHHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCch

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=81.71  E-value=2.8  Score=22.33  Aligned_cols=27  Identities=30%  Similarity=0.460  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010063          331 AMCSLAHAKCANGNAEEAVELYKKALR  357 (519)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~  357 (519)
                      +|+.+-..|.+.|++++|.+.+++..+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~   28 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRE   28 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence            467788999999999999999998754

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>smart00101 14_3_3 14-3-3 homologues

Probab=81.57  E-value=36  Score=29.84  Aligned_cols=183  Identities=10%  Similarity=0.022  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhhhhhcCCCc
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYV-YIGDLKFVQSLLDMMSGIVDSLKDDE  199 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (519)
                      ++..+...-..++|++.+.+..++++...     +  ..-...-.+.++.+|- ..|....+...+.....-....+  .
T Consensus         4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~-----~--~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~--~   74 (244)
T smart00101        4 NVYMAKLAEQAERYEEMVEFMEKVAKTVD-----S--EELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRG--N   74 (244)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhhcC-----C--ccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccC--c
Confidence            45566777788999999999988766311     0  1122223345555553 35666777776655322211111  1


Q ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHhhc-----CC-----HHHHHH
Q 010063          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS---ILLVTSLLGMAKVLGSI-----GR-----AKKAVE  266 (519)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~-----g~-----~~~A~~  266 (519)
                      +..    ..+..-|. ..=-++=.......+.+....+-+..   ...+-.+...|..|...     |+     .++|..
T Consensus        75 ~~~----~~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~  149 (244)
T smart00101       75 EDH----VASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLV  149 (244)
T ss_pred             hHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            111    11111111 11122344556666666655433321   12222333344444332     22     458899


Q ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHH
Q 010063          267 IYHRVITILELNRGTESADLVLPLFSLGSLFI-KEGKAVDAESVFSRILKIY  317 (519)
Q Consensus       267 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~  317 (519)
                      .|++|.++......+.+|.......|.+..|+ -+++.++|..+.+++++-.
T Consensus       150 aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A  201 (244)
T smart00101      150 AYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  201 (244)
T ss_pred             HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            99999999887667777776666666665555 4699999998888887754

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=80.24  E-value=2.9  Score=35.45  Aligned_cols=55  Identities=15%  Similarity=0.253  Sum_probs=49.3

Q ss_pred             HHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063          171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (519)
Q Consensus       171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (519)
                      .....||.+.|.+.+.+++.+.       |.+...|+.+|....+.|+++.|...|++.+++
T Consensus         4 ~~~~~~D~~aaaely~qal~la-------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l   58 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELA-------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL   58 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcC-------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence            3456789999999999999887       788888999999999999999999999999887

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=80.18  E-value=53  Score=30.87  Aligned_cols=144  Identities=13%  Similarity=0.102  Sum_probs=100.6

Q ss_pred             HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHH
Q 010063          126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI  205 (519)
Q Consensus       126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  205 (519)
                      ..++...++.+|...-+..+....- .....-+--.+.+++.+..+|-..|+...-...+...+... .+..+....+..
T Consensus       134 Lfl~d~K~~kea~~~~~~~l~~i~~-~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA-tLrhd~e~qavL  211 (493)
T KOG2581|consen  134 LFLIDQKEYKEADKISDALLASISI-QNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA-TLRHDEEGQAVL  211 (493)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh-hhcCcchhHHHH
Confidence            4557778899998888776554211 00011133345677888888888898777666666555443 335555666677


Q ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010063          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (519)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (519)
                      .+.+-..|...+.|+.|.....++.--  .  ...+...++.++.+|.+..-+++|..|.+++-+|+...
T Consensus       212 iN~LLr~yL~n~lydqa~~lvsK~~~p--e--~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka  277 (493)
T KOG2581|consen  212 INLLLRNYLHNKLYDQADKLVSKSVYP--E--AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA  277 (493)
T ss_pred             HHHHHHHHhhhHHHHHHHHHhhcccCc--c--ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence            788888999999999998877765311  0  11233678889999999999999999999999998764

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.16  E-value=68  Score=32.17  Aligned_cols=107  Identities=16%  Similarity=0.180  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (519)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (519)
                      -.++.+-|.-.++..+|..++++|...+......  ..+...+.....++.||....+.+.|.+++++|-+.        
T Consensus       354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~--------  423 (872)
T KOG4814|consen  354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV--------  423 (872)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------
Confidence            3456667778888999999999999988765331  223355788889999999999999999999999775        


Q ss_pred             ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 010063          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  319 (519)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  319 (519)
                      +|........+-.+....|+-++|+............
T Consensus       424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~  460 (872)
T KOG4814|consen  424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE  460 (872)
T ss_pred             ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence            3444555566667777889999999988887766543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	519
3nf1_A	311	Crystal Structure Of The Tpr Domain Of Kinesin Ligh		4e-08
3nf1_A	311	Crystal Structure Of The Tpr Domain Of Kinesin Ligh		5e-07
3ceq_A	283	The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc		8e-08
3ceq_A	283	The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc		3e-07
3ceq_A	283	The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc		3e-06
3edt_B	283	Crystal Structure Of The Mutated S328n Hklc2 Tpr Do		9e-08
3edt_B	283	Crystal Structure Of The Mutated S328n Hklc2 Tpr Do		3e-07
3edt_B	283	Crystal Structure Of The Mutated S328n Hklc2 Tpr Do		3e-06

>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 75/173 (43%)
Query: 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 257
           D P +  +L  +  +Y     Y+ +  +    + + E   GK    +  +L  +A + G 
Sbjct: 64  DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 123
Query: 258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317
            G+ K+A  +  R + I E   G +  D+   L +L  L   +GK  + E  + R L+IY
Sbjct: 124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183
Query: 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 370
               G +D  V     +LA      G  ++A  LYK+ L    +  + S+DD 
Sbjct: 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236

>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 5/122 (4%)
Query: 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 461
           I EK  GK+HP+    L NLA  Y +   + EAE L +  L+I  K +G D   ++  + 
Sbjct: 98  IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157
Query: 462 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKL-----FCFVLFGLVWFCLLL 516
           +L +   +  + +E E     AL I +   G D   V K       C++  G       L
Sbjct: 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETL 217
Query: 517 YK 518
           YK
Sbjct: 218 YK 219

>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 84/175 (48%), Gaps = 2/175 (1%)
Query: 154 AGNKGIEEVAILDIIALGYVYIGDLKFVQSLL-DMMSGIVDSLKDDEPLLDAILLHMGSM 212
           +G+   +   +L+I+AL Y      K    LL D ++    +L  D P + A L ++  +
Sbjct: 35  SGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94
Query: 213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 272
           Y     Y+++  + +R + + E   GK    +   L  +A +  + G+A++    Y R +
Sbjct: 95  YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRAL 154
Query: 273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL-KIYTKVYGENDG 326
            I     G +  ++     +L S ++K+GK  DAE+++  IL + + K +G  +G
Sbjct: 155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNG 209

>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 75/171 (43%)
Query: 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 257
           D P +  +L  +  +Y     Y+++  +    + + E   GK    +  +L  +A + G 
Sbjct: 38  DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 97
Query: 258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317
            G+ K+A  +  R + I E   G    D+   L +L  L   +GKA + E  + R L+IY
Sbjct: 98  RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIY 157
Query: 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 368
               G +D  V     +LA      G  ++A  LYK+ L    +  + S++
Sbjct: 158 ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVN 208

>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 5/122 (4%)
Query: 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 461
           I EK  GK+HP+    L NLA  Y +   + EAE L +  L+I  K +G     ++  + 
Sbjct: 72  IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLS 131
Query: 462 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKL-----FCFVLFGLVWFCLLL 516
           +L +   +  + +E E     AL I     G D   V K       C++  G       L
Sbjct: 132 NLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETL 191
Query: 517 YK 518
           YK
Sbjct: 192 YK 193

>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 84/175 (48%), Gaps = 2/175 (1%)
Query: 154 AGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD-SLKDDEPLLDAILLHMGSM 212
           +G+   +   +L+I+AL Y      K    LL+    I + +L  D P + A L ++  +
Sbjct: 35  SGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94
Query: 213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 272
           Y     Y+++  + +R + + E   GK    +   L  +A +  + G+A++    Y R +
Sbjct: 95  YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154
Query: 273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL-KIYTKVYGENDG 326
            I     G +  ++     +L S ++K+GK  DAE+++  IL + + K +G  +G
Sbjct: 155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNG 209

>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 75/171 (43%)
Query: 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 257
           D P +  +L  +  +Y     Y+++  +    + + E   GK    +  +L  +A + G 
Sbjct: 38  DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 97
Query: 258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317
            G+ K+A  +  R + I E   G    D+   L +L  L   +GKA + E  + R L+IY
Sbjct: 98  RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY 157
Query: 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 368
               G +D  V     +LA      G  ++A  LYK+ L    +  + S++
Sbjct: 158 ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVN 208

>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 5/122 (4%)
Query: 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 461
           I EK  GK+HP+    L NLA  Y +   + EAE L +  L+I  K +G     ++  + 
Sbjct: 72  IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLN 131
Query: 462 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKL-----FCFVLFGLVWFCLLL 516
           +L +   +  + +E E     AL I     G D   V K       C++  G       L
Sbjct: 132 NLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETL 191
Query: 517 YK 518
           YK
Sbjct: 192 YK 193

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	519
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	5e-35
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	3e-27
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	6e-34
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-27
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-26
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-13
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-19
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-13
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	7e-19
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	4e-15
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	7e-14
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	1e-12
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	9e-06
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	3e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-18
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-17
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	6e-10
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-17
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-17
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	5e-07
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-16
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-15
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-12
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-11
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	5e-10
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	8e-09
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-07
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-10
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	8e-08
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	4e-07
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	7e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-06
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	8e-10
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	1e-06
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	5e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	9e-09
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-05
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	2e-08
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	2e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-05
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	5e-08
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	2e-05
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	2e-05
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	5e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	9e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	9e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-04
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	6e-07
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	4e-06
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	9e-05
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	3e-04
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	1e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	7e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-06
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	5e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	6e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	8e-04

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  131 bits (333), Expect = 5e-35
 Identities = 59/290 (20%), Positives = 100/290 (34%), Gaps = 17/290 (5%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
             H     S L     ++ + ++ +  LE   G     + T L  +A V     + K+A 
Sbjct: 4   SHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAA 63

Query: 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325
            + +  + I E   G +   +   L +L  L+ K GK  +AE +  R L+I  KV G+  
Sbjct: 64  HLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD------SIMENMRIDL 379
             V   + +LA      G AEE    Y++AL +        L            N    L
Sbjct: 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT----RLGPDDPNVAKTKNN----L 175

Query: 380 AELLHIVGRGQEGRELLEECL-LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438
           A      G+ Q+   L +E L    EK  G  +       ++            ++    
Sbjct: 176 ASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYG 235

Query: 439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488
                   K    D  +++  +  LG       + + A  L   A   R+
Sbjct: 236 EYGSWY--KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNRK 283

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  109 bits (276), Expect = 3e-27
 Identities = 49/255 (19%), Positives = 88/255 (34%), Gaps = 17/255 (6%)

Query: 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 306
           S          +     AV +  + +  LE   G +  D+   L  L  ++  + K  +A
Sbjct: 3   SSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEA 62

Query: 307 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 366
             + +  L I  K  G++   V   + +LA      G  +EA  L K+AL + +      
Sbjct: 63  AHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK----V 118

Query: 367 LDD------SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 420
           L          + N    LA L    G+ +E        L I     G + P+      N
Sbjct: 119 LGKFHPDVAKQLNN----LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174

Query: 421 LAASYSRSKNFVEAERLLRICLDIM-TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL 479
           LA+ Y +   + +AE L +  L     K  G  +       +H        ++ +++   
Sbjct: 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY 234

Query: 480 VLEALYIREIAFGKD 494
                + +  A   D
Sbjct: 235 GEYGSWYK--ACKVD 247

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  129 bits (327), Expect = 6e-34
 Identities = 59/293 (20%), Positives = 106/293 (36%), Gaps = 18/293 (6%)

Query: 204 AILLH-MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAK 262
              LH +   Y++   YE ++ + ++ +  LE   G     + T L  +A V     + K
Sbjct: 27  LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 86

Query: 263 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322
            A  + +  + I E   G +   +   L +L  L+ K GK  +AE +  R L+I  KV G
Sbjct: 87  DAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 146

Query: 323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD------SIMENMR 376
           ++   V   + +LA      G  EE    Y++AL + +      L            N  
Sbjct: 147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT----KLGPDDPNVAKTKNN-- 200

Query: 377 IDLAELLHIVGRGQEGRELLEECLLIT-EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE 435
             LA      G+ ++   L +E L    E+  G          ++            +  
Sbjct: 201 --LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT 258

Query: 436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488
                      K    D  +++  + +LG       + + AE L   A+  R+
Sbjct: 259 SFGE--YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  111 bits (281), Expect = 1e-27
 Identities = 59/245 (24%), Positives = 98/245 (40%), Gaps = 4/245 (1%)

Query: 204 AILLH-MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAK 262
           A +L+ +  +Y     Y+ +  +    + + E   GK    +  +L  +A + G  G+ K
Sbjct: 69  ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 128

Query: 263 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322
           +A  +  R + I E   G +  D+   L +L  L   +GK  + E  + R L+IY    G
Sbjct: 129 EAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188

Query: 323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL 382
            +D  V     +LA      G  ++A  LYK+ L    +  + S+DD           E 
Sbjct: 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM-HAEER 247

Query: 383 LHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 442
               G+ ++G    E       K    + P+  T L NL A Y R   F  AE L    +
Sbjct: 248 EECKGKQKDGTSFGE--YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305

Query: 443 DIMTK 447
               +
Sbjct: 306 RSRKQ 310

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  108 bits (271), Expect = 3e-26
 Identities = 54/231 (23%), Positives = 86/231 (37%), Gaps = 19/231 (8%)

Query: 273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 332
            +     G E    +  L +L   +  +G+   A  +  + L+   K  G +   V   +
Sbjct: 13  NLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATML 72

Query: 333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNY--------MSLDDSIMENMRIDLAELLH 384
             LA         ++A  L   AL  I++            +L+         +LA L  
Sbjct: 73  NILALVYRDQNKYKDAANLLNDAL-AIREKTLGKDHPAVAATLN---------NLAVLYG 122

Query: 385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444
             G+ +E   L +  L I EK  GK+HP     L NLA        + E E   +  L+I
Sbjct: 123 KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182

Query: 445 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI-REIAFGKD 494
               +GPDD +++    +L        + K+AE L  E L    E  FG  
Sbjct: 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV 233

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 71.0 bits (175), Expect = 1e-13
 Identities = 27/102 (26%), Positives = 44/102 (43%)

Query: 393 RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 452
                    +  +  G E P+ +  L NL   Y+    +  A  L +  L+ + KT G D
Sbjct: 5   HHHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD 64

Query: 453 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 494
              ++  +  L +     N+ K+A  L+ +AL IRE   GKD
Sbjct: 65  HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 87.9 bits (218), Expect = 4e-19
 Identities = 49/388 (12%), Positives = 117/388 (30%), Gaps = 31/388 (7%)

Query: 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIG 176
           ++    NE   MI   +  DA  L       V++ I    +  + +    ++   +  + 
Sbjct: 11  RVGVKINEWYKMIRQFSVPDAEIL----KAEVEQDIQQMEEDQDLLIYYSLMCFRHQLML 66

Query: 177 DLKFVQSLLDMMSGIVDSLKDDEPLLDAI--------LLHMGSMYSTLENYEKSMLVYQR 228
           D             + + L+  E     +        L   G      + Y +++  Y+ 
Sbjct: 67  DYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYRE 126

Query: 229 VINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL 288
               L                 +A+    + +   ++    + + I + N    S   + 
Sbjct: 127 AEKELPFVSDDIEK--AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQ-NHPLYSIRTIQ 183

Query: 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA 348
            LF +   +        A       L++   +  +    + +++ ++A++   +G+ + A
Sbjct: 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF--IAISLLNIANSYDRSGDDQMA 241

Query: 349 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG 408
           VE ++KA +V ++     L   +       L+  L   G+ Q+  + +EE L        
Sbjct: 242 VEHFQKAAKVSREKVPDLLPKVL-----FGLSWTLCKAGQTQKAFQFIEEGLDHITARSH 296

Query: 409 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY 468
           K +      L  +       +   +        L    K                     
Sbjct: 297 KFYKELFLFLQAVYKETVDERKIHDL-------LSYFEKKNLHAYIEACA--RSAAAVFE 347

Query: 469 HLNRDKEAEKLVLEALYIREIAFGKDSL 496
                ++A     + L  +E     + L
Sbjct: 348 SSCHFEQAAAFYRKVLKAQEDILKGECL 375

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 71.0 bits (174), Expect = 2e-13
 Identities = 50/339 (14%), Positives = 108/339 (31%), Gaps = 31/339 (9%)

Query: 160 EEVAILDIIALGYVYIGDLKFVQS--LLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE 217
             V +   I   Y  I       +  L   +   +  +++D+ LL    L M   +  + 
Sbjct: 10  SRVGVK--INEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSL-MCFRHQLML 66

Query: 218 NYEKSMLVYQ------RVINVLESRYGKTSILLVT-SLLGMAKVLGSIGRAKKAVEIYHR 270
           +Y +    Y        ++  +E+   K + LL   SL              +A+  Y  
Sbjct: 67  DYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYRE 126

Query: 271 VITIL-ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 329
               L  ++   E A+     F +   +    +   +     + L IY         R  
Sbjct: 127 AEKELPFVSDDIEKAEF---HFKVAEAYYHMKQTHVSMYHILQALDIYQNHP-LYSIRTI 182

Query: 330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRG 389
            ++  +A       + ++A+   + AL +  D          + N    +A      G  
Sbjct: 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLN----IANSYDRSGDD 238

Query: 390 QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV 449
           Q   E  ++   ++ +      P     L  L+ +  ++    +A + +   LD +T   
Sbjct: 239 QMAVEHFQKAAKVSREKVPDLLPKV---LFGLSWTLCKAGQTQKAFQFIEEGLDHITARS 295

Query: 450 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488
                        L + L  + ++   E+ + + L   E
Sbjct: 296 HKF-------YKELFLFLQAVYKETVDERKIHDLLSYFE 327

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 87.3 bits (216), Expect = 7e-19
 Identities = 38/293 (12%), Positives = 92/293 (31%), Gaps = 15/293 (5%)

Query: 193 DSLKDDEPLLDAILLH-MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGM 251
           + L         +    +G +        +S+ + Q+    +  ++      L  SL+  
Sbjct: 42  EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ-MARQHDVWHYAL-WSLIQQ 99

Query: 252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFS 311
           +++L + G  + A E   +   ++      +       +     L     +  +AE+   
Sbjct: 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 159

Query: 312 RILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 371
             +++ +        +    +  L     A G+ + A     +   ++ +  Y S   S 
Sbjct: 160 SGIEVLSSY---QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216

Query: 372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF 431
              +R        + G        L              +        N+A +      F
Sbjct: 217 ANKVR---VIYWQMTGDKAAAANWLRHTAKPE----FANNHFLQGQWRNIARAQILLGEF 269

Query: 432 VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL 484
             AE +L    +         D + +  +L L    +   R  +A++++L+AL
Sbjct: 270 EPAEIVLEELNENARSLRLMSDLNRN--LLLLNQLYWQAGRKSDAQRVLLDAL 320

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 75.8 bits (186), Expect = 4e-15
 Identities = 39/316 (12%), Positives = 101/316 (31%), Gaps = 18/316 (5%)

Query: 129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMM 188
           I  GN ++A  L +    A+  +          +    ++       G+L    +L+   
Sbjct: 25  INDGNPDEAERLAK---LAL--EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79

Query: 189 SGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSL 248
             +          L + L+    +       + +    ++   ++  ++ +   +    +
Sbjct: 80  EQMARQHDVWHYALWS-LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV 138

Query: 249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAES 308
              A++L +  R  +A          +E+    +    +  L  L    +  G   +A S
Sbjct: 139 RIRAQLLWAWARLDEAEASARSG---IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARS 195

Query: 309 VFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 368
             +R+  +       +   +  A           G+   A    +   +    +N+    
Sbjct: 196 QLNRLENLLGN-GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF--- 251

Query: 369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS 428
              ++    ++A    ++G  +    +LEE        +         +LL L   Y ++
Sbjct: 252 ---LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL--MSDLNRNLLLLNQLYWQA 306

Query: 429 KNFVEAERLLRICLDI 444
               +A+R+L   L +
Sbjct: 307 GRKSDAQRVLLDALKL 322

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 71.9 bits (176), Expect = 7e-14
 Identities = 31/293 (10%), Positives = 81/293 (27%), Gaps = 17/293 (5%)

Query: 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG 256
            ++ +          +     N +++  + +     LE          + +   + +VL 
Sbjct: 8   REDTMHAEFNALRAQVAINDGNPDEAERLAKLA---LEELPPGWFYSRIVATSVLGEVLH 64

Query: 257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316
             G   +++ +  +   +    +       +  L     +   +G    A     +  ++
Sbjct: 65  CKGELTRSLALMQQTEQMAR--QHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 122

Query: 317 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR 376
             + + E        +   A    A    +EA    +  + V+                 
Sbjct: 123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS-----YQPQQQLQCL 177

Query: 377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK-NFVEAE 435
             L +     G     R  L     +     GK H  ++++   +   Y +   +   A 
Sbjct: 178 AMLIQCSLARGDLDNARSQLNRLENLLG--NGKYHSDWISNANKVRVIYWQMTGDKAAAA 235

Query: 436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488
             LR       K    ++  +     ++      L   + AE ++ E      
Sbjct: 236 NWLRHTA----KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 284

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 68.5 bits (167), Expect = 1e-12
 Identities = 27/169 (15%), Positives = 53/169 (31%), Gaps = 9/169 (5%)

Query: 331 AMCSLAHAKCAN--GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR 388
           A  +   A+ A   GN +EA  L K AL  +    + S    +  ++   L E+LH  G 
Sbjct: 14  AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYS--RIVATSV---LGEVLHCKGE 68

Query: 389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 448
                 L+++   +  ++        +  L+  +           A         ++ + 
Sbjct: 69  LTRSLALMQQTEQMARQHD--VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ 126

Query: 449 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP 497
                    F +      L+   R  EAE      + +      +  L 
Sbjct: 127 HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 46.9 bits (111), Expect = 9e-06
 Identities = 13/123 (10%), Positives = 32/123 (26%), Gaps = 5/123 (4%)

Query: 379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438
            A++    G   E   L +  L   E+       S +     L            +  L+
Sbjct: 20  RAQVAINDGNPDEAERLAKLAL---EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALM 76

Query: 439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV 498
           +    +  +          + ++     L+     + A +   +A  +      +     
Sbjct: 77  QQTEQMARQ--HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134

Query: 499 GKL 501
             L
Sbjct: 135 EFL 137

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 37/294 (12%), Positives = 87/294 (29%), Gaps = 15/294 (5%)

Query: 93  DFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI 152
           +  RS  L   +  +    + +   L  L  + + +   G    A +  +  ++ + EQ 
Sbjct: 68  ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH 127

Query: 153 NAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSM 212
                  E +  +   A        L   ++       ++ S +  + L    +L     
Sbjct: 128 LEQLPMHEFLVRI--RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML--IQC 183

Query: 213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 272
                + + +     R+ N+L +     S  +  +           G    A        
Sbjct: 184 SLARGDLDNARSQLNRLENLLGNG-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 242

Query: 273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 332
                     +  L     ++    I  G+   AE V   + +    +       +   +
Sbjct: 243 KPE----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNL 296

Query: 333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS--LDDSIMENMRIDLAELLH 384
             L       G   +A  +   AL++   + ++S  + +   E M   L +L+ 
Sbjct: 297 LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG--EAMAQQLRQLIQ 348

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 85.8 bits (213), Expect = 3e-18
 Identities = 63/383 (16%), Positives = 133/383 (34%), Gaps = 53/383 (13%)

Query: 131 MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAI-LDIIALGYVYIGD----LKFVQSLL 185
           +G+     +    N      Q  +G+ G   + + L +        GD    + F Q+ +
Sbjct: 21  LGSGGGGTNSHDGNS-----QQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAI 75

Query: 186 DMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLV 245
                      +D   L AI   +G+ Y  L +Y K+M  ++  + + +S   +      
Sbjct: 76  QA-------GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE--A 126

Query: 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAV 304
            S   +   L  +GR  +A     R +T+  +L            L++LG+++  +GK +
Sbjct: 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA---LYNLGNVYHAKGKHL 183

Query: 305 D-----------------AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE 347
                             A   +   LK+   +        G A  +L +     G+ + 
Sbjct: 184 GQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGA--QGRACGNLGNTYYLLGDFQA 241

Query: 348 AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK 407
           A+E +++ LR+ ++      D +       +L      +G+ ++  E  +  L +  +  
Sbjct: 242 AIEHHQERLRIAREFG----DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL- 296

Query: 408 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL 467
             E         +L  +Y+    F  A       L I  +      ++ +     LG   
Sbjct: 297 -GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARAC--WSLGNAH 353

Query: 468 YHLNRDKEAEKLVLEALYIREIA 490
             +   + A K   + L   ++A
Sbjct: 354 SAIGGHERALKYAEQHL---QLA 373

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 83.9 bits (208), Expect = 1e-17
 Identities = 42/298 (14%), Positives = 82/298 (27%), Gaps = 29/298 (9%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
                     L +       +           G +S+     L    + L + G  +  V
Sbjct: 11  ASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSM--CLELALEGERLCNAGDCRAGV 68

Query: 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325
             +   I     +  T SA        LG+ +   G    A       L +   +     
Sbjct: 69  AFFQAAIQAGTEDLRTLSAI----YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKAL---RVIKD--------SN----YMSLDDS 370
                +  +L +     G  +EA    ++ L   R + D         N    Y +    
Sbjct: 125 --EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKH 182

Query: 371 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 430
           + +           +        E  +E L +       +  +      NL  +Y    +
Sbjct: 183 LGQRNPGKFG--DDVKEALTRAVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYYLLGD 238

Query: 431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488
           F  A    +  L I  +  G D  +      +LG +   L + ++A +     L +  
Sbjct: 239 FQAAIEHHQERLRIA-REFG-DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 44/260 (16%), Positives = 72/260 (27%), Gaps = 33/260 (12%)

Query: 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 306
           S          +G        +         + G     + L L   G      G     
Sbjct: 10  SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGS--SMCLELALEGERLCNAGDCRAG 67

Query: 307 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 366
            + F   ++  T    E+   +      L +A    G+  +A++ +K  L + K  N   
Sbjct: 68  VAFFQAAIQAGT----EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN--- 120

Query: 367 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 426
            D         +L   L ++GR  E     E  L +  +    +  S    L NL   Y 
Sbjct: 121 -DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYH 177

Query: 427 R-----------------SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH-LGITLY 468
                              +    A    +  L +M        Q  +      LG T Y
Sbjct: 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRA---CGNLGNTYY 234

Query: 469 HLNRDKEAEKLVLEALYIRE 488
            L   + A +   E L I  
Sbjct: 235 LLGDFQAAIEHHQERLRIAR 254

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 82.9 bits (205), Expect = 2e-17
 Identities = 50/390 (12%), Positives = 132/390 (33%), Gaps = 32/390 (8%)

Query: 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIG 176
            + E  NE    I   +  DA  L       +K++++   +  +      ++   +  + 
Sbjct: 11  SIGEKINEWYMYIRRFSIPDAEYL----RREIKQELDQMEEDQDLHLYYSLMEFRHNLML 66

Query: 177 D---------LKFVQSLLDMMSGIVDSLKDDEPLLDAI-LLHMGSMYSTLENYEKSMLVY 226
           +         ++    L D++  I         LL+       G        Y  ++  +
Sbjct: 67  EYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFF 126

Query: 227 QRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 286
           ++  + L   + K  I        M++    + +   +++   +   I +      +  L
Sbjct: 127 KKAESKL--IFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYK-EHEAYNIRL 183

Query: 287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE 346
           +       + F+   +  DA S F +   +      +    +G  + ++   K +    E
Sbjct: 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQSQYE 241

Query: 347 EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 406
           +A+  +K+A+ V ++SN +             + ++ + +G+  +  E   + +  ++K 
Sbjct: 242 DAIPYFKRAIAVFEESNILPSLPQAYFL----ITQIHYKLGKIDKAHEYHSKGMAYSQKA 297

Query: 407 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT 466
               + S    L +L  S    +        L   +         D +  +   + +   
Sbjct: 298 GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY------ADLEDFA---IDVAKY 348

Query: 467 LYHLNRDKEAEKLVLEALYIREIAFGKDSL 496
            +     ++A    L+   +R++  G  SL
Sbjct: 349 YHERKNFQKASAYFLKVEQVRQLIQGGVSL 378

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 81.5 bits (202), Expect = 4e-17
 Identities = 50/313 (15%), Positives = 107/313 (34%), Gaps = 34/313 (10%)

Query: 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL 255
            +D   L AI   +G+ Y  L +Y K++  +   + +  +   +       +   +   L
Sbjct: 36  TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE--AKASGNLGNTL 93

Query: 256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD---------- 305
             +G   +A+    R + I               L++LG+++  +GK+            
Sbjct: 94  KVLGNFDEAIVCCQRHLDISRELNDKV--GEARALYNLGNVYHAKGKSFGCPGPQDTGEF 151

Query: 306 ----------AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 355
                     A  ++   L + T + G+     G A  +L +     GN  +AV  +++ 
Sbjct: 152 PEDVRNALQAAVDLYEENLSLVTAL-GDRAA-QGRAFGNLGNTHYLLGNFRDAVIAHEQR 209

Query: 356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 415
           L + K+      D +       +L      +G  +   E  ++ LL+  + K        
Sbjct: 210 LLIAKEFG----DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD--RAVEA 263

Query: 416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE 475
               +L  +Y+  +++ +A       L I  +      +  +     LG     L    +
Sbjct: 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC--WSLGNAYTALGNHDQ 321

Query: 476 AEKLVLEALYIRE 488
           A     + L I  
Sbjct: 322 AMHFAEKHLEISR 334

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 66.5 bits (163), Expect = 3e-12
 Identities = 60/354 (16%), Positives = 125/354 (35%), Gaps = 47/354 (13%)

Query: 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGD- 177
           LEL  E + +   G+    +   +    AV  Q+   +      AI   +   Y Y+ D 
Sbjct: 6   LELALEGERLCKSGDCRAGVSFFE---AAV--QVGTEDLK-TLSAIYSQLGNAYFYLHDY 59

Query: 178 ---LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE 234
              L++    L +   I      D+        ++G+    L N++++++  QR +++  
Sbjct: 60  AKALEYHHHDLTLARTI-----GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR 114

Query: 235 SRYGKTSILLVTSLLGMAKVLGSIGRA--------------------KKAVEIYHRVITI 274
               K       +L  +  V  + G++                    + AV++Y   +++
Sbjct: 115 ELNDKVGE--ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172

Query: 275 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCS 334
           +      + A       +LG+     G   DA     + L I  + +G+       A  +
Sbjct: 173 VT--ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGDKAA-ERRAYSN 228

Query: 335 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE 394
           L +A    G  E A E YKK L + +       D ++       L     ++   ++  +
Sbjct: 229 LGNAYIFLGEFETASEYYKKTLLLARQLK----DRAVEAQSCYSLGNTYTLLQDYEKAID 284

Query: 395 LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 448
              + L I ++ K  +         +L  +Y+   N  +A       L+I  + 
Sbjct: 285 YHLKHLAIAQELK--DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 50.7 bits (122), Expect = 5e-07
 Identities = 37/220 (16%), Positives = 62/220 (28%), Gaps = 34/220 (15%)

Query: 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349
           L   G    K G      S F   +++ T    E+   +      L +A     +  +A+
Sbjct: 8   LALEGERLCKSGDCRAGVSFFEAAVQVGT----EDLKTLSAIYSQLGNAYFYLHDYAKAL 63

Query: 350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409
           E +   L + +       D         +L   L ++G   E     +  L I+ +    
Sbjct: 64  EYHHHDLTLARTIG----DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND- 118

Query: 410 EHPSFVTHLLNLAASYSR--------------------SKNFVEAERLLRICLDIMTKTV 449
                   L NL   Y                            A  L    L ++T   
Sbjct: 119 -KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG 177

Query: 450 GPDDQSISFPMLH-LGITLYHLNRDKEAEKLVLEALYIRE 488
               Q  +      LG T Y L   ++A     + L I +
Sbjct: 178 DRAAQGRA---FGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 32/239 (13%), Positives = 75/239 (31%), Gaps = 28/239 (11%)

Query: 97  SKTLHDHSS---------NLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEA 147
           S+ L+D            N++                     +      A+DL + N   
Sbjct: 113 SRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172

Query: 148 VKEQINAGNKGIEEVAILDIIALGYVYIGD----LKFVQSLLDMMSGIVDSLKDDEPLLD 203
           V      G++   +      +   +  +G+    +   +  L +          D+    
Sbjct: 173 VTA---LGDRA-AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-----GDKAAER 223

Query: 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKK 263
               ++G+ Y  L  +E +   Y++ + +      +       S   +      +   +K
Sbjct: 224 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE--AQSCYSLGNTYTLLQDYEK 281

Query: 264 AVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321
           A++ + + + I  EL    +        +SLG+ +   G    A     + L+I  +V 
Sbjct: 282 AIDYHLKHLAIAQELK---DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 337

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 53/314 (16%), Positives = 108/314 (34%), Gaps = 36/314 (11%)

Query: 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL 255
            +D   L AI   +G+ Y  L +Y K++  +   + +  +   +       +   +   L
Sbjct: 40  TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE--AKASGNLGNTL 97

Query: 256 GSIGRAKKAVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVD--------- 305
             +G   +A+    R + I  ELN     A     L++LG+++  +GK+           
Sbjct: 98  KVLGNFDEAIVCCQRHLDISRELNDKVGEARA---LYNLGNVYHAKGKSFGCPGPQDVGE 154

Query: 306 -----------AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK 354
                      A   +   L + T +        G A  +L +     GN  +AV  +++
Sbjct: 155 FPEEVRDALQAAVDFYEENLSLVTALGDRAA--QGRAFGNLGNTHYLLGNFRDAVIAHEQ 212

Query: 355 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF 414
            L + K+      D +       +L      +G  +   E  ++ LL+  + K       
Sbjct: 213 RLLIAKEFG----DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD--RAVE 266

Query: 415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDK 474
                +L  +Y+  +++ +A       L I  +      +  +     LG     L    
Sbjct: 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRAC--WSLGNAYTALGNHD 324

Query: 475 EAEKLVLEALYIRE 488
           +A     + L I  
Sbjct: 325 QAMHFAEKHLEISR 338

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 78.1 bits (193), Expect = 1e-15
 Identities = 68/409 (16%), Positives = 134/409 (32%), Gaps = 60/409 (14%)

Query: 110 GMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIA 169
           G    E   LEL  E + +   G+    +   +    AV  Q+   +      AI   + 
Sbjct: 1   GPGSMEASCLELALEGERLCKSGDCRAGVSFFE---AAV--QVGTEDLK-TLSAIYSQLG 54

Query: 170 LGYVYIGD----LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLV 225
             Y Y+ D    L++    L +   I      D+        ++G+    L N++++++ 
Sbjct: 55  NAYFYLHDYAKALEYHHHDLTLARTI-----GDQLGEAKASGNLGNTLKVLGNFDEAIVC 109

Query: 226 YQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA--------------------KKAV 265
            QR +++      K       +L  +  V  + G++                    + AV
Sbjct: 110 CQRHLDISRELNDKVGE--ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167

Query: 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325
           + Y   ++++      + A       +LG+     G   DA     + L I  + +G+  
Sbjct: 168 DFYEENLSLVT--ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGDKA 224

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKAL---RVIKDSNYM--SLDDSIMENMRIDLA 380
                A  +L +A    G  E A E YKK L   R +KD      S            L 
Sbjct: 225 A-ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS---------LG 274

Query: 381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 440
               ++   ++  +   + L I ++    +         +L  +Y+   N  +A      
Sbjct: 275 NTYTLLQDYEKAIDYHLKHLAIAQELN--DRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332

Query: 441 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD-KEAEKLVLEALYIRE 488
            L+I  +      +  +    +L      L         ++ E   I  
Sbjct: 333 HLEISREVGDKSGELTARL--NLSDLQMVLGLSYSTNNSIMSENTEIDS 379

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 19/147 (12%), Positives = 48/147 (32%), Gaps = 7/147 (4%)

Query: 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 257
           D  +       +G+ Y+ L++YEK++  + + + + +    +       +   +     +
Sbjct: 262 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE--GRACWSLGNAYTA 319

Query: 258 IGRAKKAVEIYHRVITILE--LNRGTESA---DLVLPLFSLGSLFIKEGKAVDAESVFSR 312
           +G   +A+    + + I     ++  E     +L      LG  +      +   +    
Sbjct: 320 LGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDS 379

Query: 313 ILKIYTKVYGENDGRVGMAMCSLAHAK 339
            L       G       M +  L   K
Sbjct: 380 SLNGVRPKLGRRHSMENMELMKLTPEK 406

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 68.4 bits (167), Expect = 2e-12
 Identities = 52/373 (13%), Positives = 130/373 (34%), Gaps = 30/373 (8%)

Query: 130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMS 189
           + G    A++ L+   E ++++ +A    I  +      A  Y ++G L  VQ  +D + 
Sbjct: 63  LKGQNEAALECLRKAEELIQQE-HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK 121

Query: 190 GIV-DSLKDDEPLLDAILLHMGS--MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT 246
            +              +    G   +       E++ + +++ +   + +  + +  L  
Sbjct: 122 HVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE-KKPKNPEFTSGLAI 180

Query: 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 306
           +       L +   ++ A++   + I    LN   +    VL    L  +  +  +  + 
Sbjct: 181 ASY----RLDNWPPSQNAIDPLRQAI---RLNPDNQYL-KVLLALKLHKMREEGEEEGEG 232

Query: 307 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN--Y 364
           E +    L+    V           + S A         ++A+EL KKAL  I ++   +
Sbjct: 233 EKLVEEALEKAPGVT--------DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284

Query: 365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS 424
             +       +   +    + +   ++  EL+   +   +K   + + +       LA+ 
Sbjct: 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD-EANDNLFRVCSILASL 343

Query: 425 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL-YHLNRDKEAEKLVLEA 483
           ++ +  + EAE   +               +     L  G    Y +  + +A    +E 
Sbjct: 344 HALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398

Query: 484 LYIREIAFGKDSL 496
           + I + +  K+ +
Sbjct: 399 VKINQKSREKEKM 411

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 28/185 (15%), Positives = 60/185 (32%), Gaps = 17/185 (9%)

Query: 296 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 355
           L   E    D E       K++ +   +N          LA+ K   G  E A+E  +KA
Sbjct: 24  LMEGENSLDDFED------KVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKA 77

Query: 356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 415
             +I+  +    +   +     + A + + +GR  + +  +++   + EK+         
Sbjct: 78  EELIQQEHADQAEIRSLVTW-GNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136

Query: 416 THLLNLAASYSR--SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD 473
                   +  +        A+      L+       P +   +     L I  Y L+  
Sbjct: 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNPEFTS---GLAIASYRLDNW 188

Query: 474 KEAEK 478
             ++ 
Sbjct: 189 PPSQN 193

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 24/174 (13%), Positives = 50/174 (28%), Gaps = 30/174 (17%)

Query: 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR 260
           +++     M      LE    ++   ++                      +A +     +
Sbjct: 298 VMNLRENGMYGKRKLLELIGHAVAHLKKADE-ANDNL-------FRVCSILASLHALADQ 349

Query: 261 AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD-AESVFSRILKIYTK 319
            ++A   + +  +  EL          L     G+  + + K  D A   F   +KI  K
Sbjct: 350 YEEAEYYFQKEFS-KELT----PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404

Query: 320 VYG----------------ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357
                                +G    A+  LA  +  N   ++A E  ++ L 
Sbjct: 405 SREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 23/186 (12%), Positives = 50/186 (26%), Gaps = 9/186 (4%)

Query: 303 AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362
           A +A        +    +   +      A   L +        +EA   ++   +  + S
Sbjct: 2   AFEAHDYALAERQAQALL--AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS 59

Query: 363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA 422
                D +        +  +  + G     R    E   +      ++  +   +   +A
Sbjct: 60  G----DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL-PEDPLAASANAYEVA 114

Query: 423 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 482
                  +   A +     L    +    D  +I+     LG          EA++  L 
Sbjct: 115 TVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172

Query: 483 ALYIRE 488
           A  I  
Sbjct: 173 ARDIFA 178

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 58.4 bits (142), Expect = 5e-10
 Identities = 30/212 (14%), Positives = 70/212 (33%), Gaps = 11/212 (5%)

Query: 261 AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320
           A +A +                 A      F LG ++    +  +A + F  + +   K 
Sbjct: 2   AFEAHDYALAERQAQA--LLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS 59

Query: 321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 380
              +      A+  +   +   GN + A   + +   ++     +  D         ++A
Sbjct: 60  --GDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS---LPEDPLAASANAYEVA 114

Query: 381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 440
            +    G     R+  E+ L+  ++    +  +       L     + KN +EA++    
Sbjct: 115 TVALHFGDLAGARQEYEKSLVYAQQAD--DQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172

Query: 441 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNR 472
             DI  +    D ++++  M  L    +H + 
Sbjct: 173 ARDIFAEL--EDSEAVNELMTRLNGLEHHHHH 202

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 54.6 bits (132), Expect = 8e-09
 Identities = 18/162 (11%), Positives = 52/162 (32%), Gaps = 5/162 (3%)

Query: 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG 256
                       +G +Y+ ++ ++++   +Q +    +     T+     +L  +  V  
Sbjct: 20  AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAE--HRALHQVGMVER 77

Query: 257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316
             G    A   +     +L  +   +        + + ++ +  G    A   + + L  
Sbjct: 78  MAGNWDAARRCFLEERELLA-SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136

Query: 317 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358
             +   ++   +  A   L        N  EA + + +A  +
Sbjct: 137 AQQA--DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 23/219 (10%), Positives = 55/219 (25%), Gaps = 24/219 (10%)

Query: 216 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI- 274
            +               L             +   +  V   + R  +A   +  +    
Sbjct: 6   HDYALAERQAQAL----LAHPAT-----ASGARFMLGYVYAFMDRFDEARASFQALQQQA 56

Query: 275 --LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 332
                +     A     L  +G +    G    A   F    ++   +  E+        
Sbjct: 57  QKSGDHTAEHRA-----LHQVGMVERMAGNWDAARRCFLEERELLASL-PEDPLAASANA 110

Query: 333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEG 392
             +A      G+   A + Y+K+L   + ++    D   +      L +L        E 
Sbjct: 111 YEVATVALHFGDLAGARQEYEKSLVYAQQAD----DQVAIACAFRGLGDLAQQEKNLLEA 166

Query: 393 RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF 431
           ++       I  +   ++  +    +  L        + 
Sbjct: 167 QQHWLRARDIFAEL--EDSEAVNELMTRLNGLEHHHHHH 203

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 44/269 (16%), Positives = 77/269 (28%), Gaps = 42/269 (15%)

Query: 209 MGSMYSTLEN-YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267
           +G  Y  + +  E +     +    LE  YG        + +             +A+  
Sbjct: 96  VGCYYLMVGHKNEHARRYLSKATT-LEKTYGP-------AWIAYGHSFAVESEHDQAMAA 147

Query: 268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 327
           Y     +             LP+  +G  +     +  AE  FS+ L I           
Sbjct: 148 YFTAAQL--------MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--------APE 191

Query: 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG 387
               M  +      NG  + A + +  AL  IK        D   E +  +L  +   + 
Sbjct: 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK-WEPLLNNLGHVCRKLK 250

Query: 388 RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447
           +  E  +   + L++         P   +    +   +S   NF  A       L +   
Sbjct: 251 KYAEALDYHRQALVLI--------PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--- 299

Query: 448 TVGPDDQSISFPMLHLGITLYHLNRDKEA 476
               DD         LG  +     D EA
Sbjct: 300 --RRDDTFSVT---MLGHCIEMYIGDSEA 323

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 31/285 (10%), Positives = 88/285 (30%), Gaps = 44/285 (15%)

Query: 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKA 264
           +++ +   +    +++    +   V+           + +          L  + +A + 
Sbjct: 24  VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG--------TLVELNKANEL 75

Query: 265 VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD-AESVFSRILKIYTKVYGE 323
             + H+++   +L          +  F++G  ++  G   + A    S+   +       
Sbjct: 76  FYLSHKLV---DLYP-----SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL------- 120

Query: 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL 383
            +   G A  +  H+       ++A+  Y  A + +    ++ +         + +    
Sbjct: 121 -EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ-LMKGCHLPM---------LYIGLEY 169

Query: 384 HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443
            +    +       + L I         P     +  +     ++  +  AE+     L+
Sbjct: 170 GLTNNSKLAERFFSQALSI--------APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221

Query: 444 IMTKTVGPDDQSISFPML-HLGITLYHLNRDKEAEKLVLEALYIR 487
            +             P+L +LG     L +  EA     +AL + 
Sbjct: 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.1 bits (155), Expect = 6e-11
 Identities = 71/506 (14%), Positives = 153/506 (30%), Gaps = 155/506 (30%)

Query: 61  FWAL--------KRFASVGSLEVDTEDQKHH--LSSGFSA-PNDFARSKTLH-DHSSNLW 108
           FW L        ++F       V+   + ++  L S         +    ++ +    L+
Sbjct: 68  FWTLLSKQEEMVQKF-------VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 109 DGMNDF-----ERQLLELFNEVKSMI-------------MMGN-KND-AIDLLQANYEAV 148
           +    F      R  L+ + +++  +             ++G+ K   A+D+  +    V
Sbjct: 121 NDNQVFAKYNVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS--YKV 176

Query: 149 KEQ-------INAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL 201
           + +       +N  N    E  +  +  L Y    +     S  D  S I   +   +  
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW---TSRSDHSSNIKLRIHSIQAE 233

Query: 202 LDAILLHMGSMYSTLENYEKSMLV-----YQRVINVLESRYGKTSILLVTSLLGMAKVLG 256
           L  +L          + YE  +LV       +  N          ILL T    +   L 
Sbjct: 234 LRRLLKS--------KPYENCLLVLLNVQNAKAWNAFN---LSCKILLTTRFKQVTDFLS 282

Query: 257 SIGRAKKAVEIYHRVIT------ILELNRGTESADL------VLPL-FSLGSLFIKEGKA 303
           +      +++ +   +T      +L         DL        P   S+ +  I++G A
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342

Query: 304 -------VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 356
                  V+ + + + I++                  SL        N  E  E  K   
Sbjct: 343 TWDNWKHVNCDKL-TTIIES-----------------SL--------NVLEPAEYRK--- 373

Query: 357 RVIKDSNYMSLDDSIM-ENMRIDLAELLHIV---GRGQEGRELLEEC---LLITEKYKGK 409
                  +  L  S+   +  I    LL ++       +   ++ +     L+ ++ K  
Sbjct: 374 ------MFDRL--SVFPPSAHIP-TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK-- 422

Query: 410 EHPSFVTHLLNLAASYSRS--------KNFVEAERLLRICLDIMTKTVGPDDQSISFPML 461
                   + ++               ++ V+   + +   D         DQ       
Sbjct: 423 ---ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK-TFDSDDLIPPYLDQYFYS--- 475

Query: 462 HLGITLYHLNRDKEAEKLVL-EALYI 486
           H+G   +HL   +  E++ L   +++
Sbjct: 476 HIG---HHLKNIEHPERMTLFRMVFL 498

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 26/202 (12%), Positives = 61/202 (30%), Gaps = 59/202 (29%)

Query: 53  IPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSK-TLHDHSSNL---W 108
           IP   +   W          ++ D     + L            S  ++      L    
Sbjct: 387 IPTILLSLIWF-------DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439

Query: 109 DGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI-----NAGNKGIEEVA 163
           +      R +++ +N  K+     + +D I      Y      I     N  +   E + 
Sbjct: 440 ENEYALHRSIVDHYNIPKTF----DSDDLIPPYLDQY--FYSHIGHHLKNIEH--PERMT 491

Query: 164 ILDIIALGYVYIGDLKFVQ-------SLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTL 216
           +  ++ L      D +F++       +  +    I+++L+                   L
Sbjct: 492 LFRMVFL------DFRFLEQKIRHDSTAWNASGSILNTLQQ------------------L 527

Query: 217 ENYEKSML----VYQRVINVLE 234
           + Y+  +      Y+R++N + 
Sbjct: 528 KFYKPYICDNDPKYERLVNAIL 549

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.6 bits (153), Expect = 1e-10
 Identities = 44/287 (15%), Positives = 92/287 (32%), Gaps = 60/287 (20%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
             ++G++Y      ++++  Y+  +  L+  +       +   + +A  L + G  + AV
Sbjct: 70  YSNLGNVYKERGQLQEAIEHYRHALR-LKPDF-------IDGYINLAAALVAAGDMEGAV 121

Query: 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYG 322
           + Y   +          + DL      LG+L    G+  +A++ + + ++    +   + 
Sbjct: 122 QAYVSALQY--------NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW- 172

Query: 323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL 382
                      +L     A G    A+  ++KA+  +  +   +          I+L  +
Sbjct: 173 ----------SNLGCVFNAQGEIWLAIHHFEKAVT-LDPNFLDAY---------INLGNV 212

Query: 383 LHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 442
           L                L +         P+      NLA  Y        A    R  +
Sbjct: 213 LKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264

Query: 443 DIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALYIR 487
           ++      P      FP  +  L   L       EAE     AL + 
Sbjct: 265 EL-----QPH-----FPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.0 bits (149), Expect = 3e-10
 Identities = 48/283 (16%), Positives = 97/283 (34%), Gaps = 56/283 (19%)

Query: 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267
            +G++   L   E++   Y + I   +  +         +   +  V  + G    A+  
Sbjct: 140 DLGNLLKALGRLEEAKACYLKAIE-TQPNF-------AVAWSNLGCVFNAQGEIWLAIHH 191

Query: 268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEN 324
           + + +T+          + +    +LG++  +      A + + R L +   +  V+G  
Sbjct: 192 FEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG-- 241

Query: 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH 384
                    +LA      G  + A++ Y++A+  ++     +           +LA  L 
Sbjct: 242 ---------NLACVYYEQGLIDLAIDTYRRAIE-LQPHFPDAY---------CNLANALK 282

Query: 385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444
             G   E  +     L +         P+    L NLA       N  EA RL R  L++
Sbjct: 283 EKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334

Query: 445 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487
                 P+  +      +L   L    + +EA     EA+ I 
Sbjct: 335 F-----PEFAAAHS---NLASVLQQQGKLQEALMHYKEAIRIS 369

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.2 bits (147), Expect = 5e-10
 Identities = 40/284 (14%), Positives = 84/284 (29%), Gaps = 60/284 (21%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268
           + +      + E ++  Y   +                    +  +L ++GR ++A   Y
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQ-YNPDL-------YCVRSDLGNLLKALGRLEEAKACY 158

Query: 269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 325
            + I            +  +   +LG +F  +G+   A   F + + +   +   Y    
Sbjct: 159 LKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY---- 206

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 385
                   +L +        + AV  Y +AL  +  ++ +            +LA + + 
Sbjct: 207 -------INLGNVLKEARIFDRAVAAYLRALS-LSPNHAVVH---------GNLACVYYE 249

Query: 386 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445
            G      +     + +         P F     NLA +     +  EAE      L + 
Sbjct: 250 QGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301

Query: 446 TKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALYIR 487
                P             L          +EA +L  +AL + 
Sbjct: 302 -----PT-----HADSLNNLANIKREQGNIEEAVRLYRKALEVF 335

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 57.9 bits (141), Expect = 3e-09
 Identities = 45/265 (16%), Positives = 96/265 (36%), Gaps = 56/265 (21%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268
           +G +++       ++  +++ +  L+  +       + + + +  VL       +AV  Y
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVT-LDPNF-------LDAYINLGNVLKEARIFDRAVAAY 226

Query: 269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 325
            R +++        S +  +   +L  ++ ++G    A   + R +++   +   Y    
Sbjct: 227 LRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY---- 274

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 385
                  C+LA+A    G+  EA + Y  ALR +  ++  SL          +LA +   
Sbjct: 275 -------CNLANALKEKGSVAEAEDCYNTALR-LCPTHADSL---------NNLANIKRE 317

Query: 386 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445
            G  +E   L  + L +         P F     NLA+   +     EA    +  + I 
Sbjct: 318 QGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369

Query: 446 TKTVGPDDQSISFPMLHLGITLYHL 470
                P          ++G TL  +
Sbjct: 370 -----PTFADAYS---NMGNTLKEM 386

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 57.6 bits (140), Expect = 4e-09
 Identities = 41/288 (14%), Positives = 85/288 (29%), Gaps = 60/288 (20%)

Query: 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKA 264
           +LL + S++      ++S       I                +   +  V    G+ ++A
Sbjct: 35  VLLLLSSIHFQCRRLDRSAHFSTLAIK-QNPLL-------AEAYSNLGNVYKERGQLQEA 86

Query: 265 VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVY 321
           +E Y   + +          D +    +L +  +  G    A   +   L+       V 
Sbjct: 87  IEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVR 138

Query: 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE 381
                        L +   A G  EEA   Y KA+   + +  ++           +L  
Sbjct: 139 -----------SDLGNLLKALGRLEEAKACYLKAIE-TQPNFAVAW---------SNLGC 177

Query: 382 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 441
           + +  G         E+ + +         P+F+   +NL      ++ F  A       
Sbjct: 178 VFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAYLRA 229

Query: 442 LDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALYIR 487
           L +      P+       ++H  L    Y       A      A+ ++
Sbjct: 230 LSLS-----PN-----HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.9 bits (128), Expect = 1e-07
 Identities = 31/195 (15%), Positives = 58/195 (29%), Gaps = 34/195 (17%)

Query: 293 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY 352
           L     + G    AE    ++ +                +  L+         + +    
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQEPDNT--------GVLLLLSSIHFQCRRLDRSAHFS 56

Query: 353 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 412
             A++        +           +L  +    G+ QE  E     L +         P
Sbjct: 57  TLAIK-QNPLLAEAY---------SNLGNVYKERGQLQEAIEHYRHALRL--------KP 98

Query: 413 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR 472
            F+   +NLAA+   + +   A +     L        PD   +      LG  L  L R
Sbjct: 99  DFIDGYINLAAALVAAGDMEGAVQAYVSALQY-----NPDLYCV---RSDLGNLLKALGR 150

Query: 473 DKEAEKLVLEALYIR 487
            +EA+   L+A+  +
Sbjct: 151 LEEAKACYLKAIETQ 165

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 35/242 (14%), Positives = 66/242 (27%), Gaps = 46/242 (19%)

Query: 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE 307
            + +A      G  + A     ++             D    L  L S+  +  +   + 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQ--------EPDNTGVLLLLSSIHFQCRRLDRSA 53

Query: 308 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 367
              +  +K    +          A  +L +     G  +EA+E Y+ ALR +K       
Sbjct: 54  HFSTLAIKQNPLLA--------EAYSNLGNVYKERGQLQEAIEHYRHALR-LKPDFIDGY 104

Query: 368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR 427
                    I+LA  L   G  +   +     L          +P       +L      
Sbjct: 105 ---------INLAAALVAAGDMEGAVQAYVSALQY--------NPDLYCVRSDLGNLLKA 147

Query: 428 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALY 485
                EA+      ++       P+     F +    LG           A     +A+ 
Sbjct: 148 LGRLEEAKACYLKAIET-----QPN-----FAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197

Query: 486 IR 487
           + 
Sbjct: 198 LD 199

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 61.1 bits (148), Expect = 2e-10
 Identities = 24/195 (12%), Positives = 64/195 (32%), Gaps = 13/195 (6%)

Query: 251 MAKVLGSIGRAKKAVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESV 309
            A    +  + ++A + Y +             +A         G +     +  +A   
Sbjct: 42  AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKA---FEQAGMMLKDLQRMPEAVQY 98

Query: 310 FSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD 369
             +   +Y +    +     MA+           +  +AV LY++A  V ++   +    
Sbjct: 99  IEKASVMYVENGTPD--TAAMALDRAGKL-MEPLDLSKAVHLYQQAAAVFENEERLRQAA 155

Query: 370 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK 429
            ++       + LL    +  E    L++   + ++ +   +P+     +          
Sbjct: 156 ELIGKA----SRLLVRQQKFDEAAASLQKEKSMYKEME--NYPTCYKKCIAQVLVQLHRA 209

Query: 430 NFVEAERLLRICLDI 444
           ++V A++ +R    I
Sbjct: 210 DYVAAQKCVRESYSI 224

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 53.0 bits (127), Expect = 8e-08
 Identities = 26/239 (10%), Positives = 70/239 (29%), Gaps = 17/239 (7%)

Query: 130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMS 189
                  A D      +  +   N  +         +   +    +  +      ++  S
Sbjct: 48  NAKQLEQAKDAYL---QEAEAHANNRSL-FHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS 103

Query: 190 GIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLL 249
            +   +++  P   A+ L          +  K++ +YQ+   V E+            + 
Sbjct: 104 VM--YVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQA--AELIG 159

Query: 250 GMAKVLGSIGRAKKAVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVDAES 308
             +++L    +  +A     +  ++  E+              +   + +     V A+ 
Sbjct: 160 KASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK---CIAQVLVQLHRADYVAAQK 216

Query: 309 VFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 367
                      + G +      A+  L  A     + E+ + + +  L    D++Y  L
Sbjct: 217 CVRE----SYSIPGFSGSEDCAALEDLLQA-YDEQDEEQLLRVCRSPLVTYMDNDYAKL 270

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 50.7 bits (121), Expect = 4e-07
 Identities = 22/195 (11%), Positives = 52/195 (26%), Gaps = 13/195 (6%)

Query: 293 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY 352
               F    +   A+  + +  + +      +      A               EAV+  
Sbjct: 42  AAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFEQAGMMLKDLQRMPEAVQYI 99

Query: 353 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 412
           +KA  +  ++                  +L+       +   L ++       ++ +E  
Sbjct: 100 EKASVMYVENG----TPDTAAMALDRAGKLME-PLDLSKAVHLYQQAA---AVFENEERL 151

Query: 413 SFVT-HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN 471
                 +   +    R + F EA   L+    +  +             +   +   H  
Sbjct: 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKC--IAQVLVQLHRA 209

Query: 472 RDKEAEKLVLEALYI 486
               A+K V E+  I
Sbjct: 210 DYVAAQKCVRESYSI 224

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 43.7 bits (103), Expect = 7e-05
 Identities = 22/153 (14%), Positives = 43/153 (28%), Gaps = 14/153 (9%)

Query: 341 ANGNAEEAVELYKKALRVIKDSNYMSLDD-----SIMENMRIDLAELLHIVGRGQEGREL 395
           A     EA E   KA + +K S      D     S         A       + ++ ++ 
Sbjct: 3   AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKA----AVAFKNAKQLEQAKDA 58

Query: 396 LEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS 455
             +        +   H +               +   EA + +     +  +   PD  +
Sbjct: 59  YLQEAEAHANNRSLFHAA--KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116

Query: 456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488
           ++   L     L       +A  L  +A  + E
Sbjct: 117 MA---LDRAGKLMEPLDLSKAVHLYQQAAAVFE 146

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 61.4 bits (149), Expect = 4e-10
 Identities = 49/377 (12%), Positives = 107/377 (28%), Gaps = 63/377 (16%)

Query: 131 MGNKNDAIDLLQA-------NYEAVKEQI-NAGNKGIEEVAILDIIALGYVYIGDLKFVQ 182
           + N + A +  +         YEA  + + N      EE  ++  +        D  F++
Sbjct: 213 LSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272

Query: 183 SLLDMMSGIVDSLKDDEPLLDA------------ILLHMGSMYSTLENYEKSMLVYQRVI 230
           SL  +         +     D             +LL           +   + +  +++
Sbjct: 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL 332

Query: 231 NVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL 290
            +            +         L   G   K   I + ++   + +      +  +  
Sbjct: 333 EIDPYN--------LDVYPLHLASLHESGEKNKLYLISNDLV---DRHP-----EKAVTW 376

Query: 291 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE 350
            ++G  ++   K  +A   FS+   +        D + G A    AH+    G  ++A+ 
Sbjct: 377 LAVGIYYLCVNKISEARRYFSKSSTM--------DPQFGPAWIGFAHSFAIEGEHDQAIS 428

Query: 351 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 410
            Y  A R +    ++           + L      +G      E L+    +        
Sbjct: 429 AYTTAAR-LFQGTHLPY---------LFLGMQHMQLGNILLANEYLQSSYAL-------- 470

Query: 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL 470
                  L  L        +   A    +  L ++ KT   +    +    +LG     L
Sbjct: 471 FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA-TWANLGHAYRKL 529

Query: 471 NRDKEAEKLVLEALYIR 487
                A   + + L + 
Sbjct: 530 KMYDAAIDALNQGLLLS 546

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 40/293 (13%), Positives = 85/293 (29%), Gaps = 44/293 (15%)

Query: 195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV 254
           L+ D   LD   LH  +         K  L+   +++               + L +   
Sbjct: 332 LEIDPYNLDVYPLH-LASLHESGEKNKLYLISNDLVD-RHPEK-------AVTWLAVGIY 382

Query: 255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL 314
              + +  +A   + +      ++     A            F  EG+   A S ++   
Sbjct: 383 YLCVNKISEARRYFSKSS---TMDPQFGPA-----WIGFAHSFAIEGEHDQAISAYTTAA 434

Query: 315 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN 374
           +++   +        +    L       GN   A E  + +   +   + + L       
Sbjct: 435 RLFQGTH--------LPYLFLGMQHMQLGNILLANEYLQSSYA-LFQYDPLLL------- 478

Query: 375 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA 434
              +L  +       Q      +  LL+ +K        +     NL  +Y + K +  A
Sbjct: 479 --NELGVVAFNKSDMQTAINHFQNALLLVKKT-QSNEKPWAATWANLGHAYRKLKMYDAA 535

Query: 435 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487
              L   L +       +D ++      + +   H      A   + E+L I 
Sbjct: 536 IDALNQGLLL-----STNDANVHT---AIALVYLHKKIPGLAITHLHESLAIS 580

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 48.3 bits (115), Expect = 5e-06
 Identities = 38/360 (10%), Positives = 99/360 (27%), Gaps = 84/360 (23%)

Query: 189 SGIVDSLKDDEPLLDAILLH-MGSMYSTLENYEKSMLVYQRVIN---------------- 231
           +     ++D    L+A + +  G +Y+ L N++++   Y+  +                 
Sbjct: 185 NANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNH 244

Query: 232 ----------VLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 281
                     VL+  Y   S      L  +  +  +    +  +      ++ +      
Sbjct: 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE-- 302

Query: 282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA 341
           +S+DL   L           + +D  ++ ++IL+I      +              +   
Sbjct: 303 KSSDL---LLCKADTLFVRSRFIDVLAITTKILEIDPY-NLD-------VYPLHLASLHE 351

Query: 342 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401
           +G   +   +    +        ++          + +      V +  E R    +   
Sbjct: 352 SGEKNKLYLISNDLVD-RHPEKAVTW---------LAVGIYYLCVNKISEARRYFSKSST 401

Query: 402 ITEKY------KG------KEH--------------PSFVTHLLNLAASYSRSKNFVEAE 435
           +  ++               EH                     L L   + +  N + A 
Sbjct: 402 MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN 461

Query: 436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 495
             L+    +        D      +  LG+  ++ +  + A      AL + +     + 
Sbjct: 462 EYLQSSYALF-----QYD---PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK 513

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 56.8 bits (138), Expect = 8e-10
 Identities = 29/159 (18%), Positives = 64/159 (40%), Gaps = 8/159 (5%)

Query: 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKK 263
               ++G+ +  L N+  +++ +++ + + +    K +     +   +      +G  + 
Sbjct: 10  RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE--RIAYSNLGNAYIFLGEFET 67

Query: 264 AVEIYHRVITILELNRGT-ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322
           A E Y +    L L R   + A      +SLG+ +        A     + L I  ++  
Sbjct: 68  ASEYYKKT---LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 124

Query: 323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361
                 G A  SL +A  A GN ++A+   +K L + ++
Sbjct: 125 RIG--EGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 11/169 (6%)

Query: 322 GENDGRVGMAMC--SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL 379
           G    R        +L +     GN  +AV  +++ L + K+    + +     N    L
Sbjct: 1   GPGS-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSN----L 55

Query: 380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439
                 +G  +   E  ++ LL+  + K            +L  +Y+  +++ +A     
Sbjct: 56  GNAYIFLGEFETASEYYKKTLLLARQLKD--RAVEAQSCYSLGNTYTLLQDYEKAIDYHL 113

Query: 440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488
             L I  +      +  +     LG     L    +A     + L I  
Sbjct: 114 KHLAIAQELKDRIGEGRAC--WSLGNAYTALGNHDQAMHFAEKHLEISR 160

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 42.9 bits (102), Expect = 5e-05
 Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 8/158 (5%)

Query: 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349
             +LG+     G   DA     + L I  +   +      +A  +L +A    G  E A 
Sbjct: 12  FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--ERIAYSNLGNAYIFLGEFETAS 69

Query: 350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409
           E YKK L + +     +++     +    L     ++   ++  +   + L I ++ K  
Sbjct: 70  EYYKKTLLLARQLKDRAVEAQSCYS----LGNTYTLLQDYEKAIDYHLKHLAIAQELK-- 123

Query: 410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447
           +         +L  +Y+   N  +A       L+I  +
Sbjct: 124 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 22/158 (13%), Positives = 55/158 (34%), Gaps = 17/158 (10%)

Query: 170 LGYVY--IGD----LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSM 223
           LG  +  +G+    +   +  L +          D+        ++G+ Y  L  +E + 
Sbjct: 15  LGNTHYLLGNFRDAVIAHEQRLLIAKEF-----GDKAAERIAYSNLGNAYIFLGEFETAS 69

Query: 224 LVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT-E 282
             Y++ + +      +       S   +      +   +KA++ + +    L + +   +
Sbjct: 70  EYYKKTLLLARQLKDRAVE--AQSCYSLGNTYTLLQDYEKAIDYHLKH---LAIAQELKD 124

Query: 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320
                   +SLG+ +   G    A     + L+I  +V
Sbjct: 125 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 162

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 39/291 (13%), Positives = 87/291 (29%), Gaps = 45/291 (15%)

Query: 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVI----NVLESRYGKTSILLVTSL---LGM 251
           +    A  L  G +       +++   +++V+    +  E +  ++ ++    +      
Sbjct: 67  KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQ 126

Query: 252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFS 311
           A           A+    +++ +                      FIKEG+   A S   
Sbjct: 127 ALDAFDGADYTAAITFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLK 178

Query: 312 RILKI---YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN---YM 365
              K+    T+ +             ++      G+ E ++   ++ L+ +   +   + 
Sbjct: 179 AASKLKSDNTEAF-----------YKISTLYYQLGDHELSLSEVRECLK-LDQDHKRCFA 226

Query: 366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY 425
                   N  I+ AE L   GR  +     E  +    K +       V     +   +
Sbjct: 227 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM----KTEPSVAEYTVRSKERICHCF 282

Query: 426 SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA 476
           S+ +  VEA R+    L +      PD+      +              EA
Sbjct: 283 SKDEKPVEAIRICSEVLQME-----PDN---VNALKDRAEAYLIEEMYDEA 325

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 56.1 bits (136), Expect = 9e-09
 Identities = 43/298 (14%), Positives = 84/298 (28%), Gaps = 57/298 (19%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
            L +G           ++  +   ++  +            +    A V  ++G++K A+
Sbjct: 6   HLELGKKLLAAGQLADALSQFHAAVD-GDPDN-------YIAYYRRATVFLAMGKSKAAL 57

Query: 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYG 322
               +VI    L     +A         G L +K+GK  +AE  F ++LK      +   
Sbjct: 58  PDLTKVI---ALKMDFTAA-----RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEK- 108

Query: 323 ENDGRVGMAMCSLAHAKCA-----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 377
           E + ++  A         A       +   A+    K L V        L        R 
Sbjct: 109 EAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--CVWDAEL--------RE 158

Query: 378 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 437
             AE     G  ++    L+           K           ++  Y +  +   +   
Sbjct: 159 LRAECFIKEGEPRKAISDLKAAS--------KLKSDNTEAFYKISTLYYQLGDHELSLSE 210

Query: 438 LRICLDIMTKTVGPDDQS---------ISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486
           +R CL +       D +              ++     L    R  +A       +  
Sbjct: 211 VRECLKLD-----QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 34/275 (12%), Positives = 80/275 (29%), Gaps = 44/275 (16%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
           L           +Y  ++    +++  +                  A+     G  +KA+
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILE-VCVWD-------AELRELRAECFIKEGEPRKAI 174

Query: 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYG 322
                     +L      +D     + + +L+ + G    + S     LK+   + + + 
Sbjct: 175 SDLKAAS---KLK-----SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF- 225

Query: 323 ENDGRVGM--AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 380
            +  +V     +   A     +G   +A   Y+  ++   + +         E     + 
Sbjct: 226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKER----IC 279

Query: 381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 440
                  +  E   +  E L +         P  V  L + A +Y   + + EA +    
Sbjct: 280 HCFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEA 331

Query: 441 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE 475
             +        +DQ I      L      L + ++
Sbjct: 332 AQEHN-----ENDQQIRE---GLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 32/246 (13%), Positives = 70/246 (28%), Gaps = 43/246 (17%)

Query: 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 306
             L + K L + G+   A+  +H  +   + +      D  +  +   ++F+  GK+  A
Sbjct: 5   KHLELGKKLLAAGQLADALSQFHAAV---DGD-----PDNYIAYYRRATVFLAMGKSKAA 56

Query: 307 ESVFSRILKI---YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD-- 361
               ++++ +   +T                  H     G  +EA + +KK L+      
Sbjct: 57  LPDLTKVIALKMDFTAAR-----------LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ 105

Query: 362 ---SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL 418
                   L  +         A               L++ L +                
Sbjct: 106 EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--------CVWDAELR 157

Query: 419 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK 478
              A  + +     +A   L+    +       D+   +     +    Y L   + +  
Sbjct: 158 ELRAECFIKEGEPRKAISDLKAASKLK-----SDN---TEAFYKISTLYYQLGDHELSLS 209

Query: 479 LVLEAL 484
            V E L
Sbjct: 210 EVRECL 215

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 55.4 bits (134), Expect = 9e-09
 Identities = 31/234 (13%), Positives = 72/234 (30%), Gaps = 41/234 (17%)

Query: 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 310
           +       G  ++A     + +   E++             +L  +F  E +   A+  +
Sbjct: 43  LGLGYLQRGNTEQAKVPLRKAL---EID-----PSSADAHAALAVVFQTEMEPKLADEEY 94

Query: 311 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 370
            + L          D R    + +           EEA +   +A +             
Sbjct: 95  RKALAS--------DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER----SR 142

Query: 371 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 430
           + EN+ +   ++     +  + +E  E+ L +        + +  +  L +A    + + 
Sbjct: 143 VFENLGLVSLQM----KKPAQAKEYFEKSLRL--------NRNQPSVALEMADLLYKERE 190

Query: 431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL 484
           +V A +   +         G      +   L LGI L  +  D++        L
Sbjct: 191 YVPARQYYDLFAQG-----GGQ----NARSLLLGIRLAKVFEDRDTAASYGLQL 235

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 18/154 (11%), Positives = 44/154 (28%), Gaps = 22/154 (14%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268
           +  ++ T    + +   Y++ +   +SR  +        L      L    R ++A +  
Sbjct: 77  LAVVFQTEMEPKLADEEYRKALA-SDSRNARV-------LNNYGGFLYEQKRYEEAYQRL 128

Query: 269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV 328
                   L              +LG + ++  K   A+  F + L++        +   
Sbjct: 129 LEASQDT-LYPERSRV-----FENLGLVSLQMKKPAQAKEYFEKSLRL--------NRNQ 174

Query: 329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362
                 +A           A + Y    +    +
Sbjct: 175 PSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 55.3 bits (132), Expect = 2e-08
 Identities = 26/157 (16%), Positives = 54/157 (34%), Gaps = 3/157 (1%)

Query: 339 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 398
            C  G  ++     K+  +  ++     +  S     +ID A    +     E  +L  E
Sbjct: 278 HCQKGLKDDLFLAAKEDPKPSQEVVKEMIQFSKDTLEKIDKARSEGLY---HEVVKLCRE 334

Query: 399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 458
           CL   E      +   +  L   +   S  + + EA    R  +D   K    ++  +  
Sbjct: 335 CLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394

Query: 459 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 495
            ++  G+T +H    +    ++ +A  I  +  G   
Sbjct: 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 45.7 bits (107), Expect = 2e-05
 Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 9/162 (5%)

Query: 257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316
           S G   + V++    +   E      +  ++  L     +        +A     R++  
Sbjct: 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG 380

Query: 317 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI-----KDSNYMSLDDSI 371
           Y K+Y  N+ ++GMA+          G+ E    +  KA  ++                 
Sbjct: 381 YMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT----KD 436

Query: 372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS 413
           +E MR+     L +  + +     + E  L  +  +    PS
Sbjct: 437 LEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQVMAEPS 478

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 43/380 (11%), Positives = 106/380 (27%), Gaps = 57/380 (15%)

Query: 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIG 176
           Q+L     + S   + + +  +  +  +           +  ++    L         + 
Sbjct: 159 QVLPSNTSLASFFGIFDSHLEVSSVNTSSNY-DTAYALLSDALQ---RLYSATDEGYLVA 214

Query: 177 DLKFVQSLLDMMSGIVDSLKDDE--PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE 234
           +    +S     S +  +  DD         L + G  +    N   + ++ Q  IN L 
Sbjct: 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN-LH 273

Query: 235 SRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG 294
                       S + +A  L     +++  + + + +   +LN   E        +  G
Sbjct: 274 PTP--------NSYIFLALTLADKENSQEFFKFFQKAV---DLNP--EYPPT---YYHRG 317

Query: 295 SLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK 354
            ++       +A+  F +   +  +               LA      G   E+   + +
Sbjct: 318 QMYFILQDYKNAKEDFQKAQSLNPENV--------YPYIQLACLLYKQGKFTESEAFFNE 369

Query: 355 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG------ 408
                K           +       AE+L   G      +  +    + E  +       
Sbjct: 370 TKL--KFPTL-----PEVPTFF---AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419

Query: 409 --KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT 466
                 + +    +   +    + F  A +LL    ++        D       + L   
Sbjct: 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--------DPRSEQAKIGLAQL 471

Query: 467 LYHLNRDKEAEKLVLEALYI 486
              + +  EA +L  ++  +
Sbjct: 472 KLQMEKIDEAIELFEDSAIL 491

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 46/309 (14%), Positives = 91/309 (29%), Gaps = 50/309 (16%)

Query: 194 SLKDDEPLLDAILLH-MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA 252
            L   +    A+ L   G+ + T +N+ +++  YQ  I  L+                ++
Sbjct: 15  GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIE-LDPNE-------PVFYSNIS 66

Query: 253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR 312
               S G  +K +E   + +   E+       D    L    S     G   DA    S 
Sbjct: 67  ACYISTGDLEKVIEFTTKAL---EIK-----PDHSKALLRRASANESLGNFTDAMFDLSV 118

Query: 313 I-----------------------LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349
           +                       +K+  +   +++GR    + S        G  +  +
Sbjct: 119 LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178

Query: 350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409
           E+         D+ Y  L D++           L       +  ++    L         
Sbjct: 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDP 237

Query: 410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH 469
              +    L      +    N ++A+ LL+  +++      P   S       L +TL  
Sbjct: 238 LRENAALALCYTGIFHFLKNNLLDAQVLLQESINL-----HPTPNSYI----FLALTLAD 288

Query: 470 LNRDKEAEK 478
               +E  K
Sbjct: 289 KENSQEFFK 297

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 33/212 (15%), Positives = 66/212 (31%), Gaps = 38/212 (17%)

Query: 282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI--------YTKVYGENDGRVGMAMC 333
           +S D    +    S  I+ G+   A S F + + +        Y     +N         
Sbjct: 2   QSVDE---MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLAT 58

Query: 334 SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGR 393
            LA A   N N ++A   YK+ L+  K  N          +     AE+    G+ ++  
Sbjct: 59  ELALAYKKNRNYDKAYLFYKELLQ--KAPNN--------VDCLEACAEMQVCRGQEKDAL 108

Query: 394 ELLEECLLITEKYKGKEHPSFVTHLLNLA-ASYSRSKNFVEAERLLRICLDIMTKTVGPD 452
            + E+ L +            +   + L    Y  ++   +        L          
Sbjct: 109 RMYEKILQL--------EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP-----TK 155

Query: 453 DQSISFPMLHLGITLYHLNRDKEAEKLVLEAL 484
            Q   +     G++     R ++A   + + +
Sbjct: 156 MQYARY---RDGLSKLFTTRYEKARNSLQKVI 184

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 24/164 (14%), Positives = 57/164 (34%), Gaps = 23/164 (14%)

Query: 194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK 253
           ++  +  +   +   +   Y    NY+K+ L Y+ ++              V  L   A+
Sbjct: 45  NVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ-KAPNN-------VDCLEACAE 96

Query: 254 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI 313
           +    G+ K A+ +Y +++   +L     +A        LG+ +    +    +      
Sbjct: 97  MQVCRGQEKDALRMYEKIL---QLEADNLAA-----NIFLGNYYYLTAEQEKKK------ 142

Query: 314 LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357
           L+   K    +  ++  A      +K      E+A    +K + 
Sbjct: 143 LETDYKKL-SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 22/161 (13%), Positives = 50/161 (31%), Gaps = 25/161 (15%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINV--------LESRYGKTSILLVTSLLGMAKVLGS 257
           +L   S         +++  +++ I +          +   K S +       +A     
Sbjct: 7   MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66

Query: 258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317
                KA   Y  ++   +        + V  L +   + +  G+  DA  ++ +IL++ 
Sbjct: 67  NRNYDKAYLFYKELL---QKAP-----NNVDCLEACAEMQVCRGQEKDALRMYEKILQL- 117

Query: 318 TKVYGENDGRVGMAMCSLAHAKCANGNAE-EAVELYKKALR 357
                  +     A   L +        E + +E   K L 
Sbjct: 118 -------EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 23/206 (11%), Positives = 63/206 (30%), Gaps = 35/206 (16%)

Query: 248 LLGMAKVLGSIGRAKKAVEIYHRVITI------LELNRGTESADLVLP--LFSLGSLFIK 299
           +L         G+  +AV  + + I +      +      +    +       L   + K
Sbjct: 7   MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66

Query: 300 EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359
                 A   +  +L+        N+      + + A  +   G  ++A+ +Y+K L++ 
Sbjct: 67  NRNYDKAYLFYKELLQKA-----PNNVD---CLEACAEMQVCRGQEKDALRMYEKILQL- 117

Query: 360 KDSNYMSLDDSIMENMRIDLAELLHIVG-RGQEGRELLEECLLITEKYKGKEHPSFVTHL 418
            +++ ++          I L    ++   + ++  E   + L                  
Sbjct: 118 -EADNLAA--------NIFLGNYYYLTAEQEKKKLETDYKKLSS--------PTKMQYAR 160

Query: 419 LNLAASYSRSKNFVEAERLLRICLDI 444
                S   +  + +A   L+  +  
Sbjct: 161 YRDGLSKLFTTRYEKARNSLQKVILR 186

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 24/163 (14%), Positives = 54/163 (33%), Gaps = 23/163 (14%)

Query: 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDS----NYMSLDDSIMENMRI--DLAELLH 384
            M     A    G   +AV  +++ + +  D      + ++D +   + ++  +LA    
Sbjct: 6   EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK 65

Query: 385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444
                 +     +E L        ++ P+ V  L   A          +A R+    L +
Sbjct: 66  KNRNYDKAYLFYKELL--------QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117

Query: 445 MTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYI 486
                  D+ +     + LG   Y    ++K+  +   + L  
Sbjct: 118 -----EADNLAA---NIFLGNYYYLTAEQEKKKLETDYKKLSS 152

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 54.1 bits (129), Expect = 5e-08
 Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 3/109 (2%)

Query: 390 QEGRELLEECLLITEKYKGKEHPSFVTHL---LNLAASYSRSKNFVEAERLLRICLDIMT 446
           +   ELLE C L  EK       S V  L             +++  A +  +  +   +
Sbjct: 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYS 371

Query: 447 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 495
           K       +++   L LG     L      EK + +A+ I E+A GKD 
Sbjct: 372 KHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 14/106 (13%), Positives = 43/106 (40%), Gaps = 3/106 (2%)

Query: 178 LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237
           L+  +   + MS +    +D    +  ++     +   ++++E ++   Q++I      Y
Sbjct: 318 LEICELSQEKMSSV---FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHY 374

Query: 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283
              S+ + +  L + ++   +       +   + I I+E+  G + 
Sbjct: 375 PVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 2/111 (1%)

Query: 342 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401
             +  E +E+ + +    K S+     +  M +M      +   +   +   +  ++ + 
Sbjct: 311 YKSPSELLEICELSQE--KMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK 368

Query: 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 452
              K+      +  +  L L   Y   +N    E+ L+  + IM    G D
Sbjct: 369 PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKD 419

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 14/104 (13%), Positives = 32/104 (30%)

Query: 257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316
                 + +EI       +       +  ++  ++    + +       A     +I+K 
Sbjct: 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP 369

Query: 317 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360
           Y+K Y      V      L        N     +  KKA+ +++
Sbjct: 370 YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME 413

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 54.4 bits (131), Expect = 6e-08
 Identities = 52/417 (12%), Positives = 113/417 (27%), Gaps = 69/417 (16%)

Query: 81  KHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDL 140
           K  +S       D   +       S         +++ L     + S   +         
Sbjct: 120 KQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN 179

Query: 141 LQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE- 199
              + EA KE +N  +        L   +       D  F ++       +  + +D++ 
Sbjct: 180 YDESNEADKELMNGLSN-------LYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL 232

Query: 200 -PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI 258
              L   L H G       +   +    ++ I  L  R          S + MA ++   
Sbjct: 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE-LFPRV--------NSYIYMALIMADR 283

Query: 259 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318
             + +    + + +   +L+    ++ +    +  G +         A   F +  ++  
Sbjct: 284 NDSTEYYNYFDKAL---KLDS--NNSSV---YYHRGQMNFILQNYDQAGKDFDKAKEL-- 333

Query: 319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID 378
                 D         LA         ++   L+ +A R  K              +   
Sbjct: 334 ------DPENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEA--------PEVPNF 377

Query: 379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS---------K 429
            AE+L       +  +  +  + +                + +A    ++         +
Sbjct: 378 FAEILTDKNDFDKALKQYDLAIEL--------ENKLDGIYVGIAPLVGKATLLTRNPTVE 429

Query: 430 NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486
           NF+EA  LL     +        D       + L           EA  L  E+  +
Sbjct: 430 NFIEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 35/287 (12%), Positives = 81/287 (28%), Gaps = 38/287 (13%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
           +L        +   ++                 + S           + L S+       
Sbjct: 113 MLERNLNKQAMSKLKEKFGDIDTATATPT----ELSTQPAKERKDKQENLPSVTSMASFF 168

Query: 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV----- 320
            I+   +T    +   E AD  L                 A+  F++  +++ +      
Sbjct: 169 GIFKPELTFANYDESNE-ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNN 227

Query: 321 -YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL 379
              +   ++ +++      K    +   A E  KKA+ +       S          I +
Sbjct: 228 EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--FPRVNSY---------IYM 276

Query: 380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439
           A ++       E     ++ L +          +  +   +        +N+ +A +   
Sbjct: 277 ALIMADRNDSTEYYNYFDKALKL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFD 328

Query: 440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486
              ++      P++    FP + L    Y  N+  + E L  EA   
Sbjct: 329 KAKEL-----DPEN---IFPYIQLACLAYRENKFDDCETLFSEAKRK 367

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 54.4 bits (130), Expect = 6e-08
 Identities = 38/218 (17%), Positives = 78/218 (35%), Gaps = 34/218 (15%)

Query: 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349
           L +L ++  ++G   +A  ++ + L++              A  +LA      G  +EA+
Sbjct: 12  LNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEAL 63

Query: 350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409
             YK+A+R+     +         +   ++   L  +   Q   +     + I       
Sbjct: 64  MHYKEAIRI--SPTFA--------DAYSNMGNTLKEMQDVQGALQCYTRAIQI------- 106

Query: 410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH 469
            +P+F     NLA+ +  S N  EA    R  L +      PD         +L   L  
Sbjct: 107 -NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-----PDFPDA---YCNLAHCLQI 157

Query: 470 LNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLF 507
           +    + ++ + + + I      K+ LP       +L+
Sbjct: 158 VCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLY 195

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 49.0 bits (116), Expect = 3e-06
 Identities = 34/157 (21%), Positives = 55/157 (35%), Gaps = 26/157 (16%)

Query: 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ 390
           ++ +LA+ K   GN EEAV LY+KAL V     +             +LA +L   G+ Q
Sbjct: 11  SLNNLANIKREQGNIEEAVRLYRKALEV--FPEFA--------AAHSNLASVLQQQGKLQ 60

Query: 391 EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 450
           E     +E + I         P+F     N+  +    ++   A +     + I      
Sbjct: 61  EALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI-----N 107

Query: 451 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487
           P          +L           EA      AL ++
Sbjct: 108 PAFADA---HSNLASIHKDSGNIPEAIASYRTALKLK 141

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 47.5 bits (112), Expect = 9e-06
 Identities = 28/173 (16%), Positives = 59/173 (34%), Gaps = 24/173 (13%)

Query: 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI 258
            P   A   ++ S+       +++++ Y+  I  +   +         +   M   L  +
Sbjct: 39  FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR-ISPTF-------ADAYSNMGNTLKEM 90

Query: 259 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318
              + A++ Y R I I        +        +L S+    G   +A + +   LK+  
Sbjct: 91  QDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL-- 140

Query: 319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 371
                       A C+LAH      +  +  E  KK + ++ D    +   S+
Sbjct: 141 ------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSV 187

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 42/290 (14%), Positives = 86/290 (29%), Gaps = 43/290 (14%)

Query: 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVIN-------VLESRYGKTSILLVTSLLGM 251
           +    A  L  G +       +++   +++V+          E++        +  L   
Sbjct: 90  KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ 149

Query: 252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFS 311
           A      G    A+    +++ +                      FIKEG+   A S   
Sbjct: 150 ALNAFGSGDYTAAIAFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLK 201

Query: 312 RILKI---YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN--YMS 366
              K+    T+ +             ++      G+ E ++   ++ L++ +D    +  
Sbjct: 202 AASKLKNDNTEAF-----------YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 250

Query: 367 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 426
                  N  I+ AE L   GR  +     E  +    K +       V     +   +S
Sbjct: 251 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVM----KTEPSIAEYTVRSKERICHCFS 306

Query: 427 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA 476
           + +  VEA R+    L +      PD+      +              EA
Sbjct: 307 KDEKPVEAIRVCSEVLQME-----PDN---VNALKDRAEAYLIEEMYDEA 348

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 33/276 (11%), Positives = 79/276 (28%), Gaps = 44/276 (15%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
           L           +Y  ++    +++  +                  A+     G  +KA+
Sbjct: 146 LRSQALNAFGSGDYTAAIAFLDKILE-VCVWD-------AELRELRAECFIKEGEPRKAI 197

Query: 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYG 322
                   +          D     + + +L+ + G    + S     LK+   + + + 
Sbjct: 198 SDLKAASKL--------KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF- 248

Query: 323 ENDGRVGMAMCSLAHAKCA--NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 380
            +  +V      +  A+    +G   +A   Y+  ++   + +         E     + 
Sbjct: 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKER----IC 302

Query: 381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 440
                  +  E   +  E L +         P  V  L + A +Y   + + EA +    
Sbjct: 303 HCFSKDEKPVEAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYET 354

Query: 441 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA 476
             +        +DQ I      L      L + ++ 
Sbjct: 355 AQEHN-----ENDQQIRE---GLEKAQRLLKQSQKR 382

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 38/287 (13%), Positives = 81/287 (28%), Gaps = 62/287 (21%)

Query: 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267
             G    T   Y +SM   ++ +                    + K L + G+   A+  
Sbjct: 8   SSGVDLGTENLYFQSMADVEKHLE-------------------LGKKLLAAGQLADALSQ 48

Query: 268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEN 324
           +H  +   + +      D  +  +   ++F+  GK+  A    ++++++   +T      
Sbjct: 49  FHAAV---DGD-----PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAAR--- 97

Query: 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS-----NYMSLDDSIMENMRIDL 379
                       H     G  +EA + +KK L+              L  S         
Sbjct: 98  --------LQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ 149

Query: 380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439
           A      G        L++ L +                   A  + +     +A   L+
Sbjct: 150 ALNAFGSGDYTAAIAFLDKILEVC--------VWDAELRELRAECFIKEGEPRKAISDLK 201

Query: 440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486
               +       D+   +     +    Y L   + +   V E L +
Sbjct: 202 AASKLK-----NDN---TEAFYKISTLYYQLGDHELSLSEVRECLKL 240

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 50.3 bits (121), Expect = 5e-07
 Identities = 18/159 (11%), Positives = 50/159 (31%), Gaps = 21/159 (13%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268
           +GS +    N+  ++   ++ I    +               + +         KA   +
Sbjct: 114 IGSYFYNKGNFPLAIQYMEKQIR-PTTTD-------PKVFYELGQAYYYNKEYVKADSSF 165

Query: 269 HRVITILELNRGTESADLVLPLFSLGSLFIK---EGKAVDAESVFSRILKIYTKVYGEND 325
            +V+   EL       ++ +              + K   A+  + +++++      +  
Sbjct: 166 VKVL---ELK-----PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK 217

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364
             +  A   +A+    N +  +A   +K  L +  D   
Sbjct: 218 DELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTN 254

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 22/166 (13%), Positives = 47/166 (28%), Gaps = 27/166 (16%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268
            G +         ++  YQ  ++  ++         +     +     + G    A++  
Sbjct: 80  YGKILMKKGQDSLAIQQYQAAVD-RDTTR-------LDMYGQIGSYFYNKGNFPLAIQYM 131

Query: 269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 325
            + I                  + LG  +    + V A+S F ++L++       Y    
Sbjct: 132 EKQI---RPTTTDPKV-----FYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGY-LWR 182

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 371
            R   A          +     A   Y+K + V         D+ I
Sbjct: 183 ARANAAQDP-------DTKQGLAKPYYEKLIEVCAPGGAKYKDELI 221

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 24/256 (9%), Positives = 63/256 (24%), Gaps = 48/256 (18%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
                       NY +++ V+ ++    +                 A     + +   A 
Sbjct: 6   EFRYADFLFKNNNYAEAIEVFNKLEA-KKYNS-------PYIYNRRAVCYYELAKYDLAQ 57

Query: 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325
           +      + +   +   +          G + +K+G+   A   +   +   T       
Sbjct: 58  KDIETYFSKVNATKAKSAD-----FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL---- 108

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN--YMSLDDSIMENMRIDLA--- 380
                    +       GN   A++  +K +R        +  L  +   N     A   
Sbjct: 109 ----DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164

Query: 381 ----------------------ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL 418
                                        +    +   E+ + +      K     +   
Sbjct: 165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEAN 224

Query: 419 LNLAASYSRSKNFVEA 434
             +A  Y+ +++ V+A
Sbjct: 225 EYIAYYYTINRDKVKA 240

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 40.3 bits (95), Expect = 9e-04
 Identities = 14/113 (12%), Positives = 34/113 (30%), Gaps = 13/113 (11%)

Query: 208 HMGSMYSTLENYEKSMLVYQRVI----NVLESRYGKTSILLVTSLLGMAKVLGSIGRAKK 263
            +G  Y   + Y K+   + +V+    N+      +                    +   
Sbjct: 147 ELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARAN---------AAQDPDTKQGL 197

Query: 264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316
           A   Y ++I +          +L+     +   +      V A++ +  IL +
Sbjct: 198 AKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 51.0 bits (122), Expect = 6e-07
 Identities = 23/146 (15%), Positives = 40/146 (27%), Gaps = 26/146 (17%)

Query: 342 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401
             +    +   + A+R                   + LA+    +G    G   ++  L 
Sbjct: 2   TADGPRELLQLRAAVRH--RPQDFVA--------WLMLADAELGMGDTTAGEMAVQRGLA 51

Query: 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 461
           +        HP     +  L       +   EA  LL+   D       P+   I    L
Sbjct: 52  L--------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA-----APEHPGI---AL 95

Query: 462 HLGITLYHLNRDKEAEKLVLEALYIR 487
            LG  L    + + A      A  + 
Sbjct: 96  WLGHALEDAGQAEAAAAAYTRAHQLL 121

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 24/205 (11%), Positives = 43/205 (20%), Gaps = 37/205 (18%)

Query: 259 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318
               + +      +               +    L    +  G     E    R L +  
Sbjct: 3   ADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL-- 52

Query: 319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID 378
                       A+  L   +       EA  L ++A     +             + + 
Sbjct: 53  ------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH----------PGIALW 96

Query: 379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438
           L   L   G+ +           +       E P     LLN        +        +
Sbjct: 97  LGHALEDAGQAEAAAAAYTRAHQLLP-----EEPYITAQLLNWRRRLCDWRALDVLSAQV 151

Query: 439 RICLDIMTKTVGPDDQSISFPMLHL 463
           R  +      V P      F  L  
Sbjct: 152 RAAVAQGVGAVEP------FAFLSE 170

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 20/186 (10%), Positives = 42/186 (22%), Gaps = 34/186 (18%)

Query: 301 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360
                        ++           +  +A   LA A+   G+        ++ L +  
Sbjct: 3   ADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL-- 52

Query: 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 420
              +              L  +     R  E   LL++             P      L 
Sbjct: 53  HPGHP--------EAVARLGRVRWTQQRHAEAAVLLQQASDA--------APEHPGIALW 96

Query: 421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 480
           L  +   +     A         ++     P++  I      L      L   +  + L 
Sbjct: 97  LGHALEDAGQAEAAAAAYTRAHQLL-----PEEPYI---TAQLLNWRRRLCDWRALDVLS 148

Query: 481 LEALYI 486
            +    
Sbjct: 149 AQVRAA 154

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 16/110 (14%), Positives = 29/110 (26%), Gaps = 16/110 (14%)

Query: 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE 307
            L +A     +G          R + +               +  LG +   + +  +A 
Sbjct: 26  WLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGRVRWTQQRHAEAA 77

Query: 308 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357
            +  +                      L HA    G AE A   Y +A +
Sbjct: 78  VLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 50.7 bits (120), Expect = 6e-07
 Identities = 10/109 (9%), Positives = 30/109 (27%)

Query: 387 GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 446
            + ++   + +  +    +     +   +  L     +        EA       ++   
Sbjct: 301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYR 360

Query: 447 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 495
                        ++ +G    H     +A K +  A  I  +  G++ 
Sbjct: 361 IFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 409

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 48.0 bits (113), Expect = 4e-06
 Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 2/112 (1%)

Query: 341 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 400
           A+   E+ + + +  +    +S  +   +     +     +    +G  +E        +
Sbjct: 299 AHWKWEQVLAMCQAIIS--SNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM 356

Query: 401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 452
                +    HP     ++ +         F +A + LR+  DIM  T G +
Sbjct: 357 EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE 408

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 44.1 bits (103), Expect = 9e-05
 Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 3/106 (2%)

Query: 178 LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237
           L   Q+++   S     L D       +L         L   E+++    R +      +
Sbjct: 307 LAMCQAIISSNSER---LPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF 363

Query: 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283
             +  +    ++ + K+    G   +A++       I+ +  G E 
Sbjct: 364 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 409

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 42.2 bits (98), Expect = 3e-04
 Identities = 14/116 (12%), Positives = 42/116 (36%)

Query: 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV 304
           V   L   + L +  + ++ + +   +I+         +   +  L       I  G   
Sbjct: 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLE 346

Query: 305 DAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360
           +A    +R ++ Y   +  +    G+ +  +   +   G   +A++  + A  +++
Sbjct: 347 EALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR 402

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 24/184 (13%), Positives = 55/184 (29%), Gaps = 12/184 (6%)

Query: 263 KAVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321
            A + + +      +     E+ +           F   G +V+A       ++I+T   
Sbjct: 55  LAGDSFLKAADYQKKAGNEDEAGNT---YVEAYKCFKSGGNSVNAVDSLENAIQIFTH-- 109

Query: 322 GENDGRVGMAMCSLA-HAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 380
                R       L    +    +  +A++ Y+ A         ++L +          A
Sbjct: 110 RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK----CA 165

Query: 381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 440
           +L  + G+  E  ++  + +            S   + L        + + V A R L+ 
Sbjct: 166 DLKALDGQYIEASDIYSKLIKS-SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224

Query: 441 CLDI 444
               
Sbjct: 225 GQSE 228

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 44/295 (14%), Positives = 81/295 (27%), Gaps = 48/295 (16%)

Query: 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG 256
           ++           G       +   ++L  +  I   +            +   +     
Sbjct: 59  ENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAIL-QDPGD-------AEAWQFLGITQA 110

Query: 257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316
                + A+    R +   EL       + +  L +L   +       DA       +K 
Sbjct: 111 ENENEQAAIVALQRCL---ELQ-----PNNLKALMALAVSYTNTSHQQDACEALKNWIKQ 162

Query: 317 ---YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME 373
              Y  +  +N          ++ +   +   E   ELY +A       N   +D  +  
Sbjct: 163 NPKYKYLV-KNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ----NGDMIDPDLQT 217

Query: 374 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE 433
                L  L H+ G      +     L +         P   +    L A+ +      E
Sbjct: 218 G----LGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGDRSEE 265

Query: 434 AERLLRICLDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALYI 486
           A       L+I      P      F      LGI+  +L   +EA    L AL +
Sbjct: 266 AVEAYTRALEIQ-----PG-----FIRSRYNLGISCINLGAYREAVSNFLTALSL 310

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 38/242 (15%), Positives = 65/242 (26%), Gaps = 40/242 (16%)

Query: 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 310
                   G     +      I     + G   A        LG    +      A    
Sbjct: 71  EGLKRLKEGDLPVTILFMEAAI---LQDPGDAEA-----WQFLGITQAENENEQAAIVAL 122

Query: 311 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN---YMSL 367
            R L++              A+ +LA +     + ++A E  K  ++           + 
Sbjct: 123 QRCLEL--------QPNNLKALMALAVSYTNTSHQQDACEALKNWIK-QNPKYKYLVKNK 173

Query: 368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR 427
             S     R+  +         +  +EL  E           +          L   +  
Sbjct: 174 KGSPGLTRRMSKS--PVDSSVLEGVKELYLEAAHQNGDMIDPD------LQTGLGVLFHL 225

Query: 428 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALY 485
           S  F  A       L +      P+D       L   LG TL + +R +EA +    AL 
Sbjct: 226 SGEFNRAIDAFNAALTVR-----PED-----YSLWNRLGATLANGDRSEEAVEAYTRALE 275

Query: 486 IR 487
           I+
Sbjct: 276 IQ 277

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 40/308 (12%), Positives = 89/308 (28%), Gaps = 61/308 (19%)

Query: 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267
            +G   +  E    +++        L+ +        +     +A    +   A  A+  
Sbjct: 60  SLGLTQAENEKDGLAIIALNHARM-LDPKD-------IAVHAALAVSHTNEHNANAALAS 111

Query: 268 YHRVITI------LELNRGTESADL-VLPLFSLGSLFIKEGKAVDAESVFSRILKI---Y 317
               +        L         D+  L + S    F    +  +  ++    L++    
Sbjct: 112 LRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND 171

Query: 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 377
            +++            SL      + N + A    ++A+  ++  +    +      +  
Sbjct: 172 AQLH-----------ASLGVLYNLSNNYDSAAANLRRAVE-LRPDDAQLWN-----KLGA 214

Query: 378 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 437
            LA       R QE  +     L I        +P +V  + N+A SYS    +  A + 
Sbjct: 215 TLANG----NRPQEALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQ 262

Query: 438 LRICLDIMTKTVGPDDQSISFPMLH---------LGITLYHLNRDKEAEKLVLEALYIRE 488
           L   + +          + +                + L  +NR    E    + +    
Sbjct: 263 LVRAIYMQ-----VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317

Query: 489 IAFGKDSL 496
             FG  S+
Sbjct: 318 KEFGLQSM 325

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 42/235 (17%), Positives = 70/235 (29%), Gaps = 41/235 (17%)

Query: 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 310
               +  +    +A   +  V           + +      SLG    +  K   A    
Sbjct: 27  EGLSMLKLANLAEAALAFEAVCQA--------APEREEAWRSLGLTQAENEKDGLAIIAL 78

Query: 311 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD-----SNYM 365
           +    +        D +      +LA +     NA  A+   +  L          S  +
Sbjct: 79  NHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNL 130

Query: 366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY 425
             D  I +                +E R LL   L +        +P+      +L   Y
Sbjct: 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--------NPNDAQLHASLGVLY 182

Query: 426 SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEK 478
           + S N+  A   LR  +++      PDD       L   LG TL + NR +EA  
Sbjct: 183 NLSNNYDSAAANLRRAVELR-----PDD-----AQLWNKLGATLANGNRPQEALD 227

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 33/239 (13%), Positives = 66/239 (27%), Gaps = 43/239 (17%)

Query: 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 306
           ++   A+ L S  R    V    R     E++R  +  +    L    S++  +     A
Sbjct: 67  AVRMFAEYLASHSRRDAIVAELDR-----EMSRSVDVTNTTF-LLMAASIYFYDQNPDAA 120

Query: 307 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 366
                +   +               M             + A +  KK            
Sbjct: 121 LRTLHQGDSLE-------------CMAMTVQILLKLDRLDLARKELKKMQDQ-------- 159

Query: 367 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 426
            +D+ +  +      L     + Q+   + +E           +    +  L   AA + 
Sbjct: 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMA--------DKCSPTLLLLNGQAACHM 211

Query: 427 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 485
               +  AE +L+  LD                +++L +   HL +  E     L  L 
Sbjct: 212 AQGRWEAAEGVLQEALDK-----DSGHPET---LINLVVLSQHLGKPPEVTNRYLSQLK 262

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 47.5 bits (112), Expect = 5e-06
 Identities = 24/206 (11%), Positives = 64/206 (31%), Gaps = 7/206 (3%)

Query: 74  EVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGN 133
           +++ + Q             +        +     +   +F++ L   +     ++   +
Sbjct: 71  DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD 130

Query: 134 KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD 193
               I  L+         I+      + + I + IA  Y   G LK    L + +   ++
Sbjct: 131 YEYCILELKKLLNQQLTGID----VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE 186

Query: 194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK 253
           +L D+E     +  +          YE+S+    + I +       +  L+        +
Sbjct: 187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSMALIGQLYYQRGE 244

Query: 254 VLGSIGRAKKAVEIY-HRVITILELN 278
            L  +   +  +E    +     ++ 
Sbjct: 245 CLRKLEYEEAEIEDAYKKASFFFDIL 270

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 14/77 (18%), Positives = 34/77 (44%), Gaps = 8/77 (10%)

Query: 408 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL 467
           G +        L L +++     + +AE +L   +        P+ Q++    +   + L
Sbjct: 20  GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-----PNHQAL---RVFYAMVL 71

Query: 468 YHLNRDKEAEKLVLEAL 484
           Y+L R ++  +L+L+ +
Sbjct: 72  YNLGRYEQGVELLLKII 88

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK 315
           G +G   +AV  Y + I       G +  DL      LGS F   G+   AE+V +  +K
Sbjct: 1   GVLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK 55

Query: 316 IYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 356
            +                  A      G  E+ VEL  K +
Sbjct: 56  QFPNHQA--------LRVFYAMVLYNLGRYEQGVELLLKII 88

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 46/301 (15%), Positives = 87/301 (28%), Gaps = 54/301 (17%)

Query: 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267
           ++G+  +  E    ++   +R +  L+           T+L+ +A    +    ++A EI
Sbjct: 103 YLGTTQAENEQELLAISALRRCLE-LKPDN-------QTALMALAVSFTNESLQRQACEI 154

Query: 268 YHRVITI--------LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319
               +               G   A L      LGSL   +   ++ + +F   +++   
Sbjct: 155 LRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPT 213

Query: 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL 379
              + D       C L      +G  ++AV+ +  AL V    N   L       +   L
Sbjct: 214 -SIDPD-----VQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLL----WNKLGATL 261

Query: 380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439
           A       + +E        L +         P ++    NL  S        EA     
Sbjct: 262 ANG----NQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFL 309

Query: 440 ICLDIMTKTVGPDDQSISFPMLH--------LGITLYHLNRDKEAEKLVLEALYIREIAF 491
             L++         +                L + L  L +           L      F
Sbjct: 310 EALNMQ-----RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMF 364

Query: 492 G 492
           G
Sbjct: 365 G 365

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 34/231 (14%), Positives = 69/231 (29%), Gaps = 35/231 (15%)

Query: 264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 323
               Y +     E N   +        F  G   ++EG   +A  +F   ++   K + E
Sbjct: 45  TSATYDKGYQFEEENPLRDHPQP----FEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HME 99

Query: 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL 383
                  A   L   +  N     A+   ++ L +    +      + +  + +      
Sbjct: 100 -------AWQYLGTTQAENEQELLAISALRRCLEL--KPDN----QTALMALAVSFTNE- 145

Query: 384 HIVGRGQEGRELLEECLLITEKYK-------GKEHPSFVTHLLNLAASYSRSKNFVEAER 436
                 ++  E+L + L  T  Y             + +     +  S      F+E + 
Sbjct: 146 ---SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKE 202

Query: 437 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487
           L    + +   ++ PD Q        LG+         +A      AL +R
Sbjct: 203 LFLAAVRLDPTSIDPDVQCG------LGVLFNLSGEYDKAVDCFTAALSVR 247

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 38/232 (16%), Positives = 69/232 (29%), Gaps = 33/232 (14%)

Query: 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 310
                   G    AV ++   +              +     LG+   +  + + A S  
Sbjct: 70  EGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISAL 121

Query: 311 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 370
            R L++              A+ +LA +        +A E+ +  LR    +    +  +
Sbjct: 122 RRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLR-YTPAYAHLVTPA 172

Query: 371 IMENMRIDLAELLHIVGRGQEGRELLE--ECLLITEKYKGKEHPSFVTHLLNLAASYSRS 428
                   L     I+G        LE  E  L   +         V     L   ++ S
Sbjct: 173 EEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV--QCGLGVLFNLS 230

Query: 429 KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEK 478
             + +A       L +      P+D      +L   LG TL + N+ +EA  
Sbjct: 231 GEYDKAVDCFTAALSVR-----PND-----YLLWNKLGATLANGNQSEEAVA 272

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 22/162 (13%), Positives = 55/162 (33%), Gaps = 27/162 (16%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVI-------NVLESRYGKTSILLVTSLLGMAKVLGSI 258
           L+ +   ++      ++  + +  +       +++           +     +   L S 
Sbjct: 135 LMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194

Query: 259 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI-- 316
               +  E++   +    L+  +   D+      LG LF   G+   A   F+  L +  
Sbjct: 195 SLFLEVKELFLAAV---RLDPTSIDPDV---QCGLGVLFNLSGEYDKAVDCFTAALSVRP 248

Query: 317 -YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357
               ++     ++G  + +          +EEAV  Y++AL 
Sbjct: 249 NDYLLWN----KLGATLANG-------NQSEEAVAAYRRALE 279

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 30/229 (13%), Positives = 58/229 (25%), Gaps = 43/229 (18%)

Query: 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 310
           +A         ++A       +               L       ++        A+  F
Sbjct: 14  LAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESF 65

Query: 311 SRILKIYTKVYGENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRV-IKDSNYMSLD 368
            + L I      E          +     C       E++  + KAL      + Y++  
Sbjct: 66  RQALSIKPD-SAE-------INNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIAN- 116

Query: 369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS 428
                N  I  A+     G+       L+  L           P F      LA +   +
Sbjct: 117 ----LNKGICSAKQ----GQFGLAEAYLKRSLAA--------QPQFPPAFKELARTKMLA 160

Query: 429 KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 477
               +A+   +     +        Q+     L LG  +     + +A 
Sbjct: 161 GQLGDADYYFKKYQSRV-----EVLQADD---LLLGWKIAKALGNAQAA 201

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 23/160 (14%), Positives = 51/160 (31%), Gaps = 23/160 (14%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL-GSIGRAKKAVEI 267
              +Y  L+  +K+   +++ ++ ++    +               L G + R  +++  
Sbjct: 48  RAEIYQYLKVNDKAQESFRQALS-IKPDSAEI-------NNNYGWFLCGRLNRPAESMAY 99

Query: 268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 327
           + + +           A       + G    K+G+   AE+   R L            +
Sbjct: 100 FDKALADP-TYPTPYIA-----NLNKGICSAKQGQFGLAEAYLKRSLAA--------QPQ 145

Query: 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 367
              A   LA  K   G   +A   +KK    ++      L
Sbjct: 146 FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDL 185

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 43.3 bits (103), Expect = 7e-05
 Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 32/159 (20%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268
            G++Y   E Y+++  ++++ +                    +  VL  + + K A+   
Sbjct: 97  AGNVYVVKEMYKEAKDMFEKALR-AGMEN-------GDLFYMLGTVLVKLEQPKLALPYL 148

Query: 269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 325
            R +   ELN      +     F  G     EG   +A S F+ + +    +   +    
Sbjct: 149 QRAV---ELN-----ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAF---- 196

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364
                   +         N E+A+E+  KA+ +    ++
Sbjct: 197 -------YNAGVTYAYKENREKALEMLDKAIDI--QPDH 226

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 44.0 bits (104), Expect = 8e-05
 Identities = 27/281 (9%), Positives = 68/281 (24%), Gaps = 54/281 (19%)

Query: 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267
             G     LE  ++ + V  +    L  +        V ++   +    ++   ++ + +
Sbjct: 247 SNGGGKQALETVQRLLPVLCQAHG-LTPQQ-------VVAIASNSGGKQALETVQRLLPV 298

Query: 268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 327
             +   +        +   V+ + S G              V  +   +  +        
Sbjct: 299 LCQAHGL--------TPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV------ 344

Query: 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG 387
             +A+ S    K A    +  + +  +A   +     +++                  + 
Sbjct: 345 --VAIASHDGGKQALETVQRLLPVLCQAHG-LTPEQVVAI---------ASNGGGKQALE 392

Query: 388 RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR--ICLDIM 445
             Q    +L +   +T        P  V  + +        +       +L     L   
Sbjct: 393 TVQRLLPVLCQAHGLT--------PEQVVAIASHDGGKQALETVQRLLPVLCQAHGLT-- 442

Query: 446 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486
                P        +   G     L            AL  
Sbjct: 443 -----PQQVVA---IASNGGGRPALESIVAQLSRPDPALAA 475

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 21/142 (14%)

Query: 341 ANGNAEEAVELYKKALRVIKDS----NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL 396
            + N  E   +    +  I       +  ++ D +M+++    A   +  GR +E     
Sbjct: 1   GSLNITENESISTAVIDAINSGATLKDINAIPDDMMDDI-YSYAYDFYNKGRIEEAEVFF 59

Query: 397 EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI 456
               +             V +++ LAA Y   + F +A  L  +   +     G +D   
Sbjct: 60  RFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-----GKND--- 103

Query: 457 SFPMLHLGITLYHLNRDKEAEK 478
             P+ H G     L    +A++
Sbjct: 104 YTPVFHTGQCQLRLKAPLKAKE 125

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.5 bits (96), Expect = 4e-04
 Identities = 25/159 (15%), Positives = 47/159 (29%), Gaps = 32/159 (20%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268
           +G  Y      ++   + +R +              V     +      + +   AV + 
Sbjct: 48  LGIAYVKTGAVDRGTELLERSLA-DAPDN-------VKVATVLGLTYVQVQKYDLAVPLL 99

Query: 269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 325
            +V           +       F LG      G+  +A   F   L +     KV+    
Sbjct: 100 IKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVH---- 147

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364
                   ++A +    G  EEA+  +KKA  +  D   
Sbjct: 148 -------RAIAFSYEQMGRHEEALPHFKKANEL--DEGA 177

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.1 bits (95), Expect = 5e-04
 Identities = 23/152 (15%), Positives = 51/152 (33%), Gaps = 30/152 (19%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268
            G  ++    Y +++++ ++V +  ++         V   L +       G   +  E+ 
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYD-ADAFD-------VDVALHLGIAYVKTGAVDRGTELL 65

Query: 269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 325
            R +          + D V     LG  +++  K   A  +  ++ +       V     
Sbjct: 66  ERSLAD--------APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVR---- 113

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357
                    L  A    G  +EA++ +K AL 
Sbjct: 114 -------FRLGVALDNLGRFDEAIDSFKIALG 138

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 39.5 bits (92), Expect = 8e-04
 Identities = 15/113 (13%), Positives = 43/113 (38%), Gaps = 25/113 (22%)

Query: 335 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ---E 391
           L        +   ++  Y++AL++  ++            +   LA +L+         +
Sbjct: 50  LGEYYLWQNDYSNSLLAYRQALQLRGENA----------ELYAALATVLYYQASQHMTAQ 99

Query: 392 GRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA----ERLLRI 440
            R ++++ L            + +T L+ LA+      N+ +A    ++++ +
Sbjct: 100 TRAMIDKAL--------ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	519
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	100.0
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.98
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.98
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.97
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.97
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.97
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.97
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.97
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.97
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.96
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.96
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.96
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.96
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.96
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.96
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.96
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.96
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.95
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.95
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.95
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.95
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.95
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.95
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.95
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.95
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.95
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.94
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.94
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.94
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.94
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.93
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.93
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.93
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.93
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.92
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.91
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.91
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.91
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.9
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.9
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.9
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.9
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.9
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.89
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.89
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.88
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.87
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.86
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.86
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.85
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.85
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.85
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.85
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.85
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.83
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.83
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.83
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.83
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.83
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.82
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.82
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.82
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.82
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.82
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.82
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.81
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.81
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.81
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.81
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.79
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.79
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.79
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.78
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.76
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.75
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.75
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.74
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.74
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.73
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.73
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.73
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.72
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.72
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.71
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.71
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.71
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.71
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.7
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.69
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.69
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.69
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.68
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.67
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.67
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.66
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.66
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.66
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.66
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.66
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.66
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.65
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.65
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.65
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.63
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.62
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.62
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.56
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.56
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.55
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.55
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.54
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.54
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.53
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.52
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.52
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.51
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.51
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.51
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.5
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.5
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.5
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.49
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.48
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.48
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.45
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.44
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.44
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.4
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.4
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.4
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.4
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.4
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.37
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.36
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.36
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.35
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.35
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.34
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.34
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.34
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.32
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.32
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.31
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.3
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.28
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.28
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.28
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.27
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.27
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.27
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.26
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.26
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.26
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.26
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.26
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.25
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.25
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.25
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.25
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.23
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.23
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.22
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.21
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.21
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.2
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.18
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.17
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.17
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.16
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.16
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.15
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.15
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.14
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.14
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.14
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.12
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.09
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.09
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.08
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.07
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.06
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.02
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.01
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.0
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.98
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.95
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.94
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.94
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.93
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.91
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.83
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.8
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.77
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.76
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.73
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.71
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.71
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.69
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.68
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.66
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.64
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.63
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.62
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.59
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.58
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.38
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.35
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.32
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.31
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.29
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.22
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.16
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.16
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.14
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.12
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.02
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.97
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.93
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.85
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.83
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.83
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.8
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.72
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.55
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.81
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.75
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.41
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.33
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.3
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.29
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.13
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.9
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.84
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.55
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.16
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.69
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	94.61
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.29
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	94.17
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.15
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.94
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.82
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	93.73
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	93.62
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	93.55
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	93.4
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.36
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	93.12
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	93.06
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	92.32
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	91.19
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	90.56
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	90.54
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	90.41
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	90.16
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	88.79
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	88.17
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	87.75
2o8p_A	227	14-3-3 domain containing protein; signaling protei	87.25
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	86.95
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	86.58
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	86.21
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	85.34
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	84.47
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	83.43
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	82.66
2o8p_A	227	14-3-3 domain containing protein; signaling protei	82.44
3iqu_A	236	14-3-3 protein sigma; signal transuction, nucleus,	82.15
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	80.63
3ubw_A	261	14-3-3E, 14-3-3 protein epsilon; adapter protein,	80.39

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=7.1e-32  Score=257.17  Aligned_cols=321  Identities=17%  Similarity=0.162  Sum_probs=278.7

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC
Q 010063          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (519)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (519)
                      ..+...+..+...|++++|+..|++++..          .|....++..+|.++...|++++|+..+++++...      
T Consensus        68 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------  131 (388)
T 1w3b_A           68 EAYSNLGNVYKERGQLQEAIEHYRHALRL----------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN------  131 (388)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHc----------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence            34777889999999999999999999987          77778899999999999999999999999988764      


Q ss_pred             chHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010063          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (519)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (519)
                       |....++..+|.++...|++++|+..|++++..        .|....++..+|.++...|++++|+..|++++++    
T Consensus       132 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----  198 (388)
T 1w3b_A          132 -PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL----  198 (388)
T ss_dssp             -TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----
T ss_pred             -CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Confidence             444456889999999999999999999999875        2444678899999999999999999999999987    


Q ss_pred             cCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                          .|....++..+|.++...|++++|+..+++++.+        +|....++.++|.++...|++++|+..++++++.
T Consensus       199 ----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  266 (388)
T 1w3b_A          199 ----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL  266 (388)
T ss_dssp             ----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence                4666789999999999999999999999999985        4555678899999999999999999999999886


Q ss_pred             HHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH
Q 010063          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  438 (519)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  438 (519)
                             .|+.+   .++.++|.++...|++++|+..++++++.        .|....++..+|.++...|++++|+.++
T Consensus       267 -------~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~  328 (388)
T 1w3b_A          267 -------QPHFP---DAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLY  328 (388)
T ss_dssp             -------CSSCH---HHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             -------CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                   34443   45789999999999999999999999985        2444578889999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhh
Q 010063          439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLL  516 (519)
Q Consensus       439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~  516 (519)
                      +++++        ..|....++..+|.++...|++++|+.+|++++++.     |++     ..++.++|.++..+|+
T Consensus       329 ~~al~--------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----p~~-----~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          329 RKALE--------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-----PTF-----ADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHTT--------SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-----TTC-----HHHHHHHHHHHHHTCC
T ss_pred             HHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCC-----HHHHHhHHHHHHHccC
Confidence            99987        246677889999999999999999999999998742     333     3568999999998875

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=3.5e-31  Score=252.37  Aligned_cols=313  Identities=15%  Similarity=0.111  Sum_probs=201.1

Q ss_pred             HHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHH
Q 010063          129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH  208 (519)
Q Consensus       129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (519)
                      ...|++++|+.++++++..          .|..+.++..+|.++...|++++|+..|++++.+.       |....++..
T Consensus        44 ~~~~~~~~a~~~~~~a~~~----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~  106 (388)
T 1w3b_A           44 FQCRRLDRSAHFSTLAIKQ----------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-------PDFIDGYIN  106 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhc----------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------cchHHHHHH
Confidence            3445555555555555544          44555566666666666666666666666655542       222334556


Q ss_pred             HHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 010063          209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL  288 (519)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  288 (519)
                      +|.++...|++++|+..|+++++.        .|....++..+|.++...|++++|+..|+++++.        .|....
T Consensus       107 l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~  170 (388)
T 1w3b_A          107 LAAALVAAGDMEGAVQAYVSALQY--------NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAV  170 (388)
T ss_dssp             HHHHHHHHSCSSHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHH
Confidence            666666666666666666666553        1222445556666666666666666666666654        344556


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 010063          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD  368 (519)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  368 (519)
                      ++.++|.++...|++++|+..|++++++        +|....++.++|.++...|++++|+..+++++..       .|+
T Consensus       171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-------~p~  235 (388)
T 1w3b_A          171 AWSNLGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-------SPN  235 (388)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-------CTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CcC
Confidence            6667777777777777777777776664        3444556667777777777777777777777665       233


Q ss_pred             chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Q 010063          369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  448 (519)
Q Consensus       369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (519)
                      +   ..++.++|.++...|++++|+..+++++++        .|....++..+|.++...|++++|+.+|++++++    
T Consensus       236 ~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----  300 (388)
T 1w3b_A          236 H---AVVHGNLACVYYEQGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL----  300 (388)
T ss_dssp             C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH----
T ss_pred             C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Confidence            3   334567777788888888888877777763        3444456777888888888888888888887774    


Q ss_pred             cCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063          449 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYK  518 (519)
Q Consensus       449 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~k  518 (519)
                          .|....++..+|.++...|++++|+.++++++++.        |+.  ..++.++|.+|..+|++.
T Consensus       301 ----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~--~~~~~~l~~~~~~~g~~~  356 (388)
T 1w3b_A          301 ----CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--------PEF--AAAHSNLASVLQQQGKLQ  356 (388)
T ss_dssp             ----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--------TTC--HHHHHHHHHHHHTTTCCH
T ss_pred             ----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCc--HHHHHHHHHHHHHcCCHH
Confidence                24445667778888888888888888888776531        222  345778888888888764

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=100.00  E-value=6.4e-30  Score=245.19  Aligned_cols=338  Identities=17%  Similarity=0.181  Sum_probs=293.8

Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcC
Q 010063          159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG  238 (519)
Q Consensus       159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  238 (519)
                      ......+...|..+...|++++|+..+++++...   +.+.+....++..+|.++...|++++|+.++++++.+....  
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--   80 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG---TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--   80 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--
Confidence            3446678899999999999999999999998874   33444567789999999999999999999999999998765  


Q ss_pred             CCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCC----------------
Q 010063          239 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK----------------  302 (519)
Q Consensus       239 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------------  302 (519)
                      .+.+....++..+|.++...|++++|+.++++++++.....  +.+....++..+|.++...|+                
T Consensus        81 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~  158 (406)
T 3sf4_A           81 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE  158 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred             cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence            45577889999999999999999999999999999988764  445667899999999999999                


Q ss_pred             ----HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 010063          303 ----AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID  378 (519)
Q Consensus       303 ----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  378 (519)
                          +++|+.++++++.+....  .+.+....++.++|.++...|++++|+.++++++++....    +++.....++.+
T Consensus       159 a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~  232 (406)
T 3sf4_A          159 VRDALQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF----GDKAAERRAYSN  232 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc----CCcHHHHHHHHH
Confidence                999999999999998776  2456778899999999999999999999999999998773    556677778999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhH
Q 010063          379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF  458 (519)
Q Consensus       379 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  458 (519)
                      +|.++...|++++|+.++++++.+....  .+.+....++..+|.++...|++++|+.++++++.+....  .+.+....
T Consensus       233 la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~  308 (406)
T 3sf4_A          233 LGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--NDRIGEGR  308 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc--CCcHHHHH
Confidence            9999999999999999999999988765  2455667899999999999999999999999999988775  34566678


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhc
Q 010063          459 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLY  517 (519)
Q Consensus       459 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~  517 (519)
                      ++..+|.+|...|++++|..++++++++.++..    .......++..+|.++..+|+.
T Consensus       309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          309 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVG----DKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc----CCcchhHHHHHHHHHHHHhhHh
Confidence            899999999999999999999999999987652    2233457788999999999976

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.1e-29  Score=243.41  Aligned_cols=343  Identities=17%  Similarity=0.192  Sum_probs=293.5

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI-EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (519)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (519)
                      ..+...|..+...|++++|+.+++++++.       .+..+ ..+.++..+|.++...|++++|+..+++++.+.... .
T Consensus        10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~   81 (406)
T 3sf4_A           10 LELALEGERLCKSGDCRAGVSFFEAAVQV-------GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-G   81 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhc-------CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-c
Confidence            34677899999999999999999999987       33333 346789999999999999999999999999988764 4


Q ss_pred             CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCC-----------------
Q 010063          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR-----------------  260 (519)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------------  260 (519)
                      +.+....++..+|.++...|++++|+.++++++.+....  .+.+....++..+|.++...|+                 
T Consensus        82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a  159 (406)
T 3sf4_A           82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV  159 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence            567778889999999999999999999999999998775  3446678899999999999999                 


Q ss_pred             ---HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 010063          261 ---AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH  337 (519)
Q Consensus       261 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  337 (519)
                         +++|+.++++++++.....  +.+....++.++|.++...|++++|+.++++++++....  ++.+....++.++|.
T Consensus       160 ~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~  235 (406)
T 3sf4_A          160 RDALQAAVDFYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGN  235 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHH
Confidence               9999999999999987763  567778899999999999999999999999999998775  244557778999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 010063          338 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH  417 (519)
Q Consensus       338 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  417 (519)
                      ++...|++++|+.++++++.+....    .++.....++..+|.++...|++++|+.++++++.+.....  +.+....+
T Consensus       236 ~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~  309 (406)
T 3sf4_A          236 AYIFLGEFETASEYYKKTLLLARQL----KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN--DRIGEGRA  309 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHHHHHhC----cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC--CcHHHHHH
Confidence            9999999999999999999998763    45666678889999999999999999999999999987752  45667789


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010063          418 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  483 (519)
Q Consensus       418 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (519)
                      +..+|.+|...|++++|..++++++++....  .+.+....++..+|.++...|+...+...+.+.
T Consensus       310 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~  373 (406)
T 3sf4_A          310 CWSLGNAYTALGNHDQAMHFAEKHLEISREV--GDKSGELTARLNLSDLQMVLGLSYSTNNSIMSE  373 (406)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTSCC-------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCcchhHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence            9999999999999999999999999998876  345677888999999999999875444333333

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.98  E-value=6.6e-29  Score=233.81  Aligned_cols=332  Identities=14%  Similarity=0.036  Sum_probs=273.1

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (519)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (519)
                      ...++..|..+...|++++|+..++++++.          .|..+.++..+|.++...|++++|+..+++++...     
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----   67 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDG----------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-----   67 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----
Confidence            345788999999999999999999999987          67778899999999999999999999999998774     


Q ss_pred             CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH------------HHHHHhhcCCHHHHH
Q 010063          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG------------MAKVLGSIGRAKKAV  265 (519)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------la~~~~~~g~~~~A~  265 (519)
                        |....++..+|.++...|++++|+..+++++...     +.......++..            +|.++...|++++|+
T Consensus        68 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~  140 (359)
T 3ieg_A           68 --MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-----PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI  140 (359)
T ss_dssp             --TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             --CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence              3334568999999999999999999999998752     200022333333            489999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH
Q 010063          266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA  345 (519)
Q Consensus       266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  345 (519)
                      ..++++++.        .|....++..+|.++...|++++|+..++++++.        .|....++..+|.++...|++
T Consensus       141 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~  204 (359)
T 3ieg_A          141 TFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL--------KSDNTEAFYKISTLYYQLGDH  204 (359)
T ss_dssp             HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CSCCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHh--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCH
Confidence            999999987        4556788999999999999999999999999874        455567899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCchHHHHH---------HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCh-hHH
Q 010063          346 EEAVELYKKALRVIKDSNYMSLDDSIMENM---------RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP-SFV  415 (519)
Q Consensus       346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~  415 (519)
                      ++|+..++++++.       .++.+.....         ...+|.++...|++++|+..+++++...     ++.+ ...
T Consensus       205 ~~A~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~  272 (359)
T 3ieg_A          205 ELSLSEVRECLKL-------DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-----PSVAEYTV  272 (359)
T ss_dssp             HHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSSHHHHH
T ss_pred             HHHHHHHHHHHhh-------CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCchHHHH
Confidence            9999999999987       3444443222         2355899999999999999999998863     2233 234


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCC
Q 010063          416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS  495 (519)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  495 (519)
                      ..+..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|..+|++++++.     |++
T Consensus       273 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-----p~~  339 (359)
T 3ieg_A          273 RSKERICHCFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-----END  339 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----TTC
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCC
Confidence            56788999999999999999999999985        35556788999999999999999999999999753     344


Q ss_pred             CcchhhHHHHHHHHHHHHhhhc
Q 010063          496 LPVGKLFCFVLFGLVWFCLLLY  517 (519)
Q Consensus       496 ~~~~~~~~~~~l~~~~~~lg~~  517 (519)
                      +     .....|+.++..+++.
T Consensus       340 ~-----~~~~~l~~~~~~~~~~  356 (359)
T 3ieg_A          340 Q-----QIREGLEKAQRLLKQS  356 (359)
T ss_dssp             H-----HHHHHHHHHHHHHHHH
T ss_pred             h-----HHHHHHHHHHHHHHHh
Confidence            3     3366778887777654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.98  E-value=1.1e-28  Score=236.99  Aligned_cols=316  Identities=18%  Similarity=0.195  Sum_probs=278.0

Q ss_pred             ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (519)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (519)
                      .+.....+..+|..+...|++++|+..+++++...   +.+......++..+|.++...|++++|+.++++++.+.+.. 
T Consensus        44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-  119 (411)
T 4a1s_A           44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG---TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM-  119 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-
T ss_pred             hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc---ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-
Confidence            45667788899999999999999999999999874   33444456789999999999999999999999999998775 


Q ss_pred             CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCC---------------
Q 010063          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK---------------  302 (519)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------------  302 (519)
                       .+.+....++..+|.+|...|++++|+.++++++++.....  +.+....++.++|.+|...|+               
T Consensus       120 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~  196 (411)
T 4a1s_A          120 -NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVK  196 (411)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHH
T ss_pred             -cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhh
Confidence             45678889999999999999999999999999999987764  467778899999999999999               


Q ss_pred             --HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHH
Q 010063          303 --AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA  380 (519)
Q Consensus       303 --~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la  380 (519)
                        +++|+.++++++++.....  +.+....++.++|.++...|++++|+.++++++++....    .+......++.++|
T Consensus       197 ~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~la  270 (411)
T 4a1s_A          197 EALTRAVEFYQENLKLMRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF----GDRAAERRANSNLG  270 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHHH
Confidence              9999999999999887762  446678899999999999999999999999999998763    45566677889999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHH
Q 010063          381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM  460 (519)
Q Consensus       381 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  460 (519)
                      .++...|++++|+.++++++.+....  .+......++..+|.++...|++++|+.++++++.+....  .+.+....++
T Consensus       271 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~  346 (411)
T 4a1s_A          271 NSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL--GDRIGEARAC  346 (411)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHH
T ss_pred             HHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChHHHHHHH
Confidence            99999999999999999999998765  2445667889999999999999999999999999998776  3456677889


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 010063          461 LHLGITLYHLNRDKEAEKLVLEALYIREIA  490 (519)
Q Consensus       461 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  490 (519)
                      ..+|.+|...|++++|..++++++++.++.
T Consensus       347 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~  376 (411)
T 4a1s_A          347 WSLGNAHSAIGGHERALKYAEQHLQLAXXX  376 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999987654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.97  E-value=6e-28  Score=225.02  Aligned_cols=312  Identities=17%  Similarity=0.202  Sum_probs=270.5

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC
Q 010063          161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT  240 (519)
Q Consensus       161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  240 (519)
                      ....+...|..+...|++++|+..+++++...   +.+.+....++..+|.++...|++++|+.++++++.+....  .+
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~   78 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG---TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GD   78 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TC
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--cc
Confidence            34567888999999999999999999999874   33444556789999999999999999999999999998775  35


Q ss_pred             CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCC------------------
Q 010063          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK------------------  302 (519)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------------  302 (519)
                      .+....++..+|.++...|++++|+.++++++++.+...  +.+....++..+|.++...|+                  
T Consensus        79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~  156 (338)
T 3ro2_A           79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVR  156 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHH
T ss_pred             cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHH
Confidence            567788999999999999999999999999999987753  445667899999999999999                  


Q ss_pred             --HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHH
Q 010063          303 --AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA  380 (519)
Q Consensus       303 --~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la  380 (519)
                        +++|+.++++++.+.+...  +.+....++.++|.++...|++++|+.+++++++.....    +++.....++..+|
T Consensus       157 ~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~l~  230 (338)
T 3ro2_A          157 NALQAAVDLYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF----GDKAAERRAYSNLG  230 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc----CChHHHHHHHHHHH
Confidence              9999999999999887762  456677899999999999999999999999999998763    45666677889999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHH
Q 010063          381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM  460 (519)
Q Consensus       381 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  460 (519)
                      .++...|++++|+.++++++.+....  .+.+....++..+|.++...|++++|..++++++.+....  .+.+....++
T Consensus       231 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~  306 (338)
T 3ro2_A          231 NAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRAC  306 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence            99999999999999999999988765  2455667889999999999999999999999999988775  3345667788


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010063          461 LHLGITLYHLNRDKEAEKLVLEALYIREI  489 (519)
Q Consensus       461 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~  489 (519)
                      ..+|.+|...|++++|..++++++++.++
T Consensus       307 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          307 WSLGNAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999998754

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.97  E-value=4.8e-28  Score=235.53  Aligned_cols=331  Identities=15%  Similarity=0.061  Sum_probs=271.4

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcC
Q 010063          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK  196 (519)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  196 (519)
                      ....++..+..+...|++++|+..|+++++.          .|..+.++..+|.++...|++++|+..+++++...    
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----   90 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG----------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK----   90 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----
Confidence            4555888899999999999999999999987          66778899999999999999999999999998874    


Q ss_pred             CCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCH---HH---------HHHHHHHHHHHhhcCCHHHH
Q 010063          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI---LL---------VTSLLGMAKVLGSIGRAKKA  264 (519)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~---------~~~~~~la~~~~~~g~~~~A  264 (519)
                         |....++..+|.+|...|++++|+..|++++..     .++.+   ..         ...+..+|.++...|++++|
T Consensus        91 ---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A  162 (450)
T 2y4t_A           91 ---MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA  162 (450)
T ss_dssp             ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             ---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence               333566899999999999999999999999864     22322   11         11244558889999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC
Q 010063          265 VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN  344 (519)
Q Consensus       265 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  344 (519)
                      +..++++++.        .|....++..+|.+|...|++++|+..++++++..        |....++..+|.++...|+
T Consensus       163 ~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~  226 (450)
T 2y4t_A          163 IAFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK--------NDNTEAFYKISTLYYQLGD  226 (450)
T ss_dssp             HHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--------CSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHh--------CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCC
Confidence            9999999986        45567889999999999999999999999999863        3445688999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCchHHHHHH---------HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh-H
Q 010063          345 AEEAVELYKKALRVIKDSNYMSLDDSIMENMR---------IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-F  414 (519)
Q Consensus       345 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~---------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~  414 (519)
                      +++|+..+++++..       .++.......+         ..+|.++...|++++|+.+|++++.+.     +.++. .
T Consensus       227 ~~~A~~~~~~~~~~-------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~  294 (450)
T 2y4t_A          227 HELSLSEVRECLKL-------DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-----PSIAEYT  294 (450)
T ss_dssp             HHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----CSSHHHH
T ss_pred             HHHHHHHHHHHHHh-------CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CcchHHH
Confidence            99999999999976       34444433332         345999999999999999999998853     23333 3


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCC
Q 010063          415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD  494 (519)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  494 (519)
                      ...+..+|.++...|++++|+..+++++.+        .|....++..+|.++...|++++|..++++++++.     ++
T Consensus       295 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~  361 (450)
T 2y4t_A          295 VRSKERICHCFSKDEKPVEAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-----EN  361 (450)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-----SS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----cc
Confidence            568899999999999999999999999985        35556788999999999999999999999999843     34


Q ss_pred             CCcchhhHHHHHHHHHHHHhh
Q 010063          495 SLPVGKLFCFVLFGLVWFCLL  515 (519)
Q Consensus       495 ~~~~~~~~~~~~l~~~~~~lg  515 (519)
                      ++     ..+..++.+...++
T Consensus       362 ~~-----~~~~~l~~~~~~~~  377 (450)
T 2y4t_A          362 DQ-----QIREGLEKAQRLLK  377 (450)
T ss_dssp             CH-----HHHHHHHHHHHHHH
T ss_pred             hH-----HHHHHHHHHHHHhh
Confidence            33     33667776554443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.97  E-value=2.8e-27  Score=227.29  Aligned_cols=312  Identities=16%  Similarity=0.172  Sum_probs=272.8

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhh
Q 010063          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI-EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS  194 (519)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  194 (519)
                      .....++..+..+...|++++|+.+++++++.       .+.++ ..+.++..+|.+|...|++++|+..+++++.+...
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  118 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQA-------GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS  118 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-------cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            34455778999999999999999999999987       33333 34578999999999999999999999999998876


Q ss_pred             cCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCC--------------
Q 010063          195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR--------------  260 (519)
Q Consensus       195 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------  260 (519)
                      . .+.+....++..+|.+|...|++++|+.++++++.+....  .+.+....++..+|.+|...|+              
T Consensus       119 ~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a  195 (411)
T 4a1s_A          119 M-NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV  195 (411)
T ss_dssp             T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred             c-cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence            4 4567888889999999999999999999999999998775  3557788899999999999999              


Q ss_pred             ---HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 010063          261 ---AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH  337 (519)
Q Consensus       261 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  337 (519)
                         +++|+.++++++++.....  +.+....++.++|.++...|++++|+.++++++++.....  +......++.++|.
T Consensus       196 ~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~  271 (411)
T 4a1s_A          196 KEALTRAVEFYQENLKLMRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG--DRAAERRANSNLGN  271 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHH
Confidence               9999999999999887764  4567788999999999999999999999999999987752  34456778999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 010063          338 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH  417 (519)
Q Consensus       338 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  417 (519)
                      ++...|++++|+.++++++......    .+......++..+|.++...|++++|+.++++++.+.....  +.+....+
T Consensus       272 ~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~  345 (411)
T 4a1s_A          272 SHIFLGQFEDAAEHYKRTLALAVEL----GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG--DRIGEARA  345 (411)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHH
T ss_pred             HHHHCcCHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChHHHHHH
Confidence            9999999999999999999998763    45556678889999999999999999999999999987762  45667789


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010063          418 LLNLAASYSRSKNFVEAERLLRICLDIMTK  447 (519)
Q Consensus       418 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~  447 (519)
                      +..+|.+|...|++++|..++++++.+.++
T Consensus       346 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~  375 (411)
T 4a1s_A          346 CWSLGNAHSAIGGHERALKYAEQHLQLAXX  375 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999997644

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.97  E-value=7.8e-27  Score=217.46  Aligned_cols=309  Identities=17%  Similarity=0.210  Sum_probs=267.8

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI-EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (519)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (519)
                      ..++..|..+...|++++|+.+++++++.       .+.++ ..+.++..+|.++...|++++|+..+++++.+.... .
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~   77 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQV-------GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-G   77 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhh-------CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-c
Confidence            34777899999999999999999999987       33333 346789999999999999999999999999887664 4


Q ss_pred             CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCC-----------------
Q 010063          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR-----------------  260 (519)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------------  260 (519)
                      +.+....++..+|.++...|++++|+.++++++++....  .+.+....++..+|.++...|+                 
T Consensus        78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a  155 (338)
T 3ro2_A           78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV  155 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence            557778889999999999999999999999999998774  3445678899999999999999                 


Q ss_pred             ---HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 010063          261 ---AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH  337 (519)
Q Consensus       261 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  337 (519)
                         +++|+.++++++.+.+...  +.+....++..+|.++...|++++|+.++++++++.....  +.+....++..+|.
T Consensus       156 ~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~  231 (338)
T 3ro2_A          156 RNALQAAVDLYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNLGN  231 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHH
Confidence               9999999999999887764  4567788999999999999999999999999999987752  34556778999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 010063          338 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH  417 (519)
Q Consensus       338 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  417 (519)
                      ++...|++++|+.++++++.+....    .++.....++..+|.++...|++++|..++++++.+.....  +.+....+
T Consensus       232 ~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~  305 (338)
T 3ro2_A          232 AYIFLGEFETASEYYKKTLLLARQL----KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRA  305 (338)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhh----cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC--CcHHHHHH
Confidence            9999999999999999999998763    45666678889999999999999999999999999987763  45666788


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010063          418 LLNLAASYSRSKNFVEAERLLRICLDIMTK  447 (519)
Q Consensus       418 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~  447 (519)
                      +..+|.+|...|++++|..++++++.+..+
T Consensus       306 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          306 CWSLGNAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999997654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.97  E-value=7.5e-27  Score=221.80  Aligned_cols=354  Identities=12%  Similarity=0.075  Sum_probs=275.2

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH--HHHHHhcCChHHHH-----------H
Q 010063          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDII--ALGYVYIGDLKFVQ-----------S  183 (519)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~-----------~  183 (519)
                      .+...++........+++++|..+.+++.+....    -..+++. ..++.+  .......++++.+.           .
T Consensus        11 ~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~----~~~~~~~-~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~   85 (383)
T 3ulq_A           11 SIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQ----MEEDQDL-HLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSD   85 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----SCCCHHH-HHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHH
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh----hccchHH-HHHHHHHHHHHHHHHhhcCcccccccccccchhh
Confidence            5566788888889999999999999998665432    1123332 233322  22223344555554           5


Q ss_pred             HHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHH
Q 010063          184 LLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKK  263 (519)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  263 (519)
                      .+++.......  .+.......++..|..+...|++++|+.++++++.+.+..  ++.+..+.++..+|.+|...|++++
T Consensus        86 ~~~~i~~~~~~--~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~~  161 (383)
T 3ulq_A           86 LLLEIDKKQAR--LTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTYF  161 (383)
T ss_dssp             HHHHHHHHTHH--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHhcCCC--chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            55554332111  0001112345569999999999999999999999886653  4556788999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC
Q 010063          264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG  343 (519)
Q Consensus       264 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  343 (519)
                      |+.++++++++.+... ...+..+.++.++|.+|...|++++|+.++++++++.++.  .+.+..+.++.++|.+|...|
T Consensus       162 A~~~~~~al~~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g  238 (383)
T 3ulq_A          162 SMDYARQAYEIYKEHE-AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQS  238 (383)
T ss_dssp             HHHHHHHHHHHHHTCS-TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHCC
Confidence            9999999999987753 1256778899999999999999999999999999998876  345667889999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 010063          344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA  423 (519)
Q Consensus       344 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  423 (519)
                      ++++|+.++++++++.+..    .+.+....++.++|.++...|++++|..++++++.+..+.   .++.....+..+|.
T Consensus       239 ~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~  311 (383)
T 3ulq_A          239 QYEDAIPYFKRAIAVFEES----NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA---GDVIYLSEFEFLKS  311 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHHT----TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHH
Confidence            9999999999999998763    3335557889999999999999999999999999998876   34555555778999


Q ss_pred             HHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCC
Q 010063          424 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS  495 (519)
Q Consensus       424 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  495 (519)
                      ++...|++    ..+++++...++.  ...+....++..+|.+|...|++++|..++++++++.+++...++
T Consensus       312 ~~~~~~~~----~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~~e~  377 (383)
T 3ulq_A          312 LYLSGPDE----EAIQGFFDFLESK--MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVS  377 (383)
T ss_dssp             HHTSSCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSSCCC
T ss_pred             HHhCCCcH----HHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhccch
Confidence            99999995    4555555555554  455777888999999999999999999999999999987766443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.97  E-value=9.1e-28  Score=239.13  Aligned_cols=339  Identities=16%  Similarity=0.096  Sum_probs=272.7

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhc
Q 010063          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (519)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (519)
                      .....+...|..+...|++++|+..|++++..          .|..+.++..+|.+|...|++++|+..+++++...   
T Consensus        23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---   89 (537)
T 3fp2_A           23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL----------DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK---   89 (537)
T ss_dssp             HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh----------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Confidence            34556888899999999999999999999988          67778899999999999999999999999988764   


Q ss_pred             CCCchHHHHHHHHHHHHHHccccHHHHHHHHH------------------------------------------------
Q 010063          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQ------------------------------------------------  227 (519)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------------------------------------------------  227 (519)
                          |....++..+|.++...|++++|+..|+                                                
T Consensus        90 ----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~  165 (537)
T 3fp2_A           90 ----PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT  165 (537)
T ss_dssp             ----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH
T ss_pred             ----CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh
Confidence                3344568889999999999999887663                                                


Q ss_pred             ------------------------------------------------------HHHHHHHHhc--CCCCH----HHHHH
Q 010063          228 ------------------------------------------------------RVINVLESRY--GKTSI----LLVTS  247 (519)
Q Consensus       228 ------------------------------------------------------~al~~~~~~~--~~~~~----~~~~~  247 (519)
                                                                            +++..+++..  .++++    ..+.+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~  245 (537)
T 3fp2_A          166 SLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALA  245 (537)
T ss_dssp             HHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
T ss_pred             HHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHH
Confidence                                                                  1222222211  12222    23567


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063          248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  327 (519)
Q Consensus       248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  327 (519)
                      +..+|.++...|++++|+..++++++.        .|. ..++..+|.++...|++++|+.+++++++.        .|.
T Consensus       246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~  308 (537)
T 3fp2_A          246 LCYTGIFHFLKNNLLDAQVLLQESINL--------HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDL--------NPE  308 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhc--------CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc--------CCC
Confidence            889999999999999999999999987        344 678999999999999999999999999985        345


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh
Q 010063          328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK  407 (519)
Q Consensus       328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  407 (519)
                      ...++..+|.++...|++++|+..+++++..       .++..   .++..+|.++...|++++|+..+++++..     
T Consensus       309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----  373 (537)
T 3fp2_A          309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSL-------NPENV---YPYIQLACLLYKQGKFTESEAFFNETKLK-----  373 (537)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence            5668999999999999999999999999987       23332   45688999999999999999999999885     


Q ss_pred             CCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhc----------CChHHHH
Q 010063          408 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL----------NRDKEAE  477 (519)
Q Consensus       408 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~  477 (519)
                         .|....++..+|.++...|++++|+..|++++......  +........+..+|.++...          |++++|+
T Consensus       374 ---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~  448 (537)
T 3fp2_A          374 ---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ--EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAI  448 (537)
T ss_dssp             ---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC--SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHH
T ss_pred             ---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc--hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHH
Confidence               23345678899999999999999999999999977543  22223344567889999999          9999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063          478 KLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYK  518 (519)
Q Consensus       478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~k  518 (519)
                      .+|++++++.     ++++     .++..+|.+|..+|++.
T Consensus       449 ~~~~~a~~~~-----p~~~-----~~~~~l~~~~~~~g~~~  479 (537)
T 3fp2_A          449 KLLTKACELD-----PRSE-----QAKIGLAQLKLQMEKID  479 (537)
T ss_dssp             HHHHHHHHHC-----TTCH-----HHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHhC-----CCCH-----HHHHHHHHHHHHhccHH
Confidence            9999999863     3333     45889999999999874

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6e-27  Score=231.86  Aligned_cols=344  Identities=14%  Similarity=0.084  Sum_probs=278.9

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcC
Q 010063          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK  196 (519)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  196 (519)
                      ....++..|..++..|++++|+..|++++..          .| .+.++..+|.++...|++++|+..+++++...    
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----   69 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALEL----------KE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK----   69 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH----------CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc----------Cc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC----
Confidence            4556889999999999999999999999987          34 37789999999999999999999999998764    


Q ss_pred             CCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHh-----------------------c----------------
Q 010063          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR-----------------------Y----------------  237 (519)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------~----------------  237 (519)
                         |....++..+|.++...|++++|+..|++++......                       .                
T Consensus        70 ---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  146 (514)
T 2gw1_A           70 ---PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQ  146 (514)
T ss_dssp             ---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred             ---hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Confidence               3444668999999999999999999999987642100                       0                


Q ss_pred             --------CC------------------------CCHHHHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHHHhc--C
Q 010063          238 --------GK------------------------TSILLVTSLLGMAKVLGS---IGRAKKAVEIYHRVITILELNR--G  280 (519)
Q Consensus       238 --------~~------------------------~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~--~  280 (519)
                              .+                        ..+.....+..+|.++..   .|++++|+..++++++..+...  .
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  226 (514)
T 2gw1_A          147 PAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKN  226 (514)
T ss_dssp             ----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             hhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccC
Confidence                    00                        001225667778887776   8999999999999999654433  2


Q ss_pred             CCC----hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010063          281 TES----ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  356 (519)
Q Consensus       281 ~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  356 (519)
                      +++    +....++..+|.++...|++++|+..++++++.        .|. ..++..+|.++...|++++|+..+++++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~  297 (514)
T 2gw1_A          227 NEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--------FPR-VNSYIYMALIMADRNDSTEYYNYFDKAL  297 (514)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred             ccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            222    667889999999999999999999999999985        244 7789999999999999999999999998


Q ss_pred             HHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHH
Q 010063          357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER  436 (519)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  436 (519)
                      ..       .+..   ..++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+.
T Consensus       298 ~~-------~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~  359 (514)
T 2gw1_A          298 KL-------DSNN---SSVYYHRGQMNFILQNYDQAGKDFDKAKEL--------DPENIFPYIQLACLAYRENKFDDCET  359 (514)
T ss_dssp             TT-------CTTC---THHHHHHHHHHHHTTCTTHHHHHHHHHHHT--------CSSCSHHHHHHHHHTTTTTCHHHHHH
T ss_pred             hc-------CcCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ChhhHHHHHHHHHHHHHcCCHHHHHH
Confidence            76       2333   235688999999999999999999999874        23334688899999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcc-hhhHHHHHHHHHHHH--
Q 010063          437 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV-GKLFCFVLFGLVWFC--  513 (519)
Q Consensus       437 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~--  513 (519)
                      ++++++..        .|....++..+|.++...|++++|..++++++++...     ++.. .....+..+|.++..  
T Consensus       360 ~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~  426 (514)
T 2gw1_A          360 LFSEAKRK--------FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK-----LDGIYVGIAPLVGKATLLTRNP  426 (514)
T ss_dssp             HHHHHHHH--------STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-----SSSCSSCSHHHHHHHHHHHTSC
T ss_pred             HHHHHHHH--------cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc-----cchHHHHHHHHHHHHHHHhhhh
Confidence            99999874        2444567899999999999999999999999987632     2221 112458889999998  


Q ss_pred             -hhhcc
Q 010063          514 -LLLYK  518 (519)
Q Consensus       514 -lg~~k  518 (519)
                       +|++.
T Consensus       427 ~~~~~~  432 (514)
T 2gw1_A          427 TVENFI  432 (514)
T ss_dssp             CTTHHH
T ss_pred             hcCCHH
Confidence             88764

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2e-27  Score=235.34  Aligned_cols=343  Identities=15%  Similarity=0.051  Sum_probs=280.6

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC-
Q 010063          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD-  197 (519)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-  197 (519)
                      ..+...+..+...|++++|+..++++++.          .|....++..+|.++...|++++|+..|+++......... 
T Consensus        40 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  109 (514)
T 2gw1_A           40 VFYSNLSACYVSVGDLKKVVEMSTKALEL----------KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDAS  109 (514)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGG
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHhcc----------ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccch
Confidence            44778899999999999999999999988          7777889999999999999999999999988765420000 


Q ss_pred             -----------------------------------------------------------------------CchHHHHHH
Q 010063          198 -----------------------------------------------------------------------DEPLLDAIL  206 (519)
Q Consensus       198 -----------------------------------------------------------------------~~~~~~~~~  206 (519)
                                                                                             ..|.....+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (514)
T 2gw1_A          110 IEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKE  189 (514)
T ss_dssp             THHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHH
Confidence                                                                                   001225567


Q ss_pred             HHHHHHHHc---cccHHHHHHHHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010063          207 LHMGSMYST---LENYEKSMLVYQRVINVLESRY--GKTS----ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (519)
Q Consensus       207 ~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~--~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (519)
                      ..+|.++..   .|++++|+..+++++...+...  .+++    +....++..+|.++...|++++|+..++++++.   
T Consensus       190 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---  266 (514)
T 2gw1_A          190 LMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL---  266 (514)
T ss_dssp             HHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---
Confidence            778888776   8999999999999998654433  2232    667889999999999999999999999999987   


Q ss_pred             hcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010063          278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  357 (519)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  357 (519)
                           .|. ..++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..++++++
T Consensus       267 -----~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  332 (514)
T 2gw1_A          267 -----FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE  332 (514)
T ss_dssp             -----CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred             -----Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence                 344 888999999999999999999999999874        344456889999999999999999999999988


Q ss_pred             HHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHH
Q 010063          358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL  437 (519)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  437 (519)
                      .       .+...   .++..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|+.+
T Consensus       333 ~-------~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~  394 (514)
T 2gw1_A          333 L-------DPENI---FPYIQLACLAYRENKFDDCETLFSEAKRKF--------PEAPEVPNFFAEILTDKNDFDKALKQ  394 (514)
T ss_dssp             T-------CSSCS---HHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             h-------ChhhH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--------ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            6       23332   356889999999999999999999998752        33346788999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHh
Q 010063          438 LRICLDIMTKTVGPDDQSISFPMLHLGITLYH---LNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCL  514 (519)
Q Consensus       438 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  514 (519)
                      +++++......  +.......++..+|.++..   .|++++|..++++++++.     +++     ..++..+|.+|..+
T Consensus       395 ~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~-----~~~~~~la~~~~~~  462 (514)
T 2gw1_A          395 YDLAIELENKL--DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-----PRS-----EQAKIGLAQMKLQQ  462 (514)
T ss_dssp             HHHHHHHHHTS--SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-----TTC-----HHHHHHHHHHHHHT
T ss_pred             HHHHHHhhhcc--chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-----ccc-----HHHHHHHHHHHHHh
Confidence            99999865332  1112224578999999999   999999999999999853     333     24588999999999


Q ss_pred             hhcc
Q 010063          515 LLYK  518 (519)
Q Consensus       515 g~~k  518 (519)
                      |+++
T Consensus       463 g~~~  466 (514)
T 2gw1_A          463 EDID  466 (514)
T ss_dssp             TCHH
T ss_pred             cCHH
Confidence            9874

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.96  E-value=1e-26  Score=226.11  Aligned_cols=340  Identities=13%  Similarity=0.059  Sum_probs=267.0

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (519)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (519)
                      ...+...+..+...|++++|+..++++++.          .|....++..+|.+|...|++++|+..+++++...    +
T Consensus        60 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~  125 (450)
T 2y4t_A           60 YIAYYRRATVFLAMGKSKAALPDLTKVIQL----------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN----P  125 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC----C
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----C
Confidence            344777889999999999999999999998          67778899999999999999999999999988754    3


Q ss_pred             CchHHHHH------------HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHH
Q 010063          198 DEPLLDAI------------LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV  265 (519)
Q Consensus       198 ~~~~~~~~------------~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  265 (519)
                      +.+....+            +..+|.++...|++++|+..+++++...        |....++..+|.+|...|++++|+
T Consensus       126 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~  197 (450)
T 2y4t_A          126 SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--------VWDAELRELRAECFIKEGEPRKAI  197 (450)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCGGGGH
T ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHCCCHHHHH
Confidence            33311122            3455888999999999999999998752        233567889999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH---------HHHH
Q 010063          266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM---------CSLA  336 (519)
Q Consensus       266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---------~~la  336 (519)
                      ..++++++.        .|....++..+|.++...|++++|+..+++++.+     .++++.....+         ..+|
T Consensus       198 ~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~~~~~~~~~~~~  264 (450)
T 2y4t_A          198 SDLKAASKL--------KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-----DQDHKRCFAHYKQVKKLNKLIESA  264 (450)
T ss_dssp             HHHHHHHHH--------HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHHHHHHHHH
Confidence            999999987        3445788999999999999999999999999875     22333322222         3449


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 010063          337 HAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVT  416 (519)
Q Consensus       337 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  416 (519)
                      .++...|++++|+.+|+++++..      +.++......+..+|.++...|++++|+..+++++.+        .|....
T Consensus       265 ~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~  330 (450)
T 2y4t_A          265 EELIRDGRYTDATSKYESVMKTE------PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--------EPDNVN  330 (450)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC------CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcC------CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHH
Confidence            99999999999999999999862      2233334567899999999999999999999999875        344557


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHH------------HHHhcC-----ChHHHHHH
Q 010063          417 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI------------TLYHLN-----RDKEAEKL  479 (519)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~------------~~~~~g-----~~~~A~~~  479 (519)
                      ++..+|.++...|++++|+..+++++++        .|....++..++.            .|...|     +.+++.+.
T Consensus       331 ~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~  402 (450)
T 2y4t_A          331 ALKDRAEAYLIEEMYDEAIQDYETAQEH--------NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKA  402 (450)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHH
Confidence            8999999999999999999999999983        3445566677774            355555     56677888


Q ss_pred             HHH-HHHHHHHhcCCCCCcch----hhHHHHHHHHHHHHhhhcc
Q 010063          480 VLE-ALYIREIAFGKDSLPVG----KLFCFVLFGLVWFCLLLYK  518 (519)
Q Consensus       480 ~~~-a~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~lg~~k  518 (519)
                      |++ ++...    ++..+...    ....+..++.+|..+||..
T Consensus       403 y~~~~l~~~----pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~  442 (450)
T 2y4t_A          403 YRKLALQWH----PDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE  442 (450)
T ss_dssp             HHHHHHHSC----GGGCCSHHHHHHHHHHHHHHHHHHHHSSGGG
T ss_pred             HHHHHHHhC----CCCCCCchHHHHHHHHHHHHHHHHHHhCCHH
Confidence            876 44422    12222211    2357889999999999865

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.96  E-value=3.1e-26  Score=231.18  Aligned_cols=334  Identities=12%  Similarity=0.045  Sum_probs=262.9

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH-----------------------------------------------
Q 010063          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKE-----------------------------------------------  150 (519)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~-----------------------------------------------  150 (519)
                      ...+...+..+...|++++|+..|+++++....                                               
T Consensus       200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  279 (597)
T 2xpi_A          200 ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL  279 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHH
Confidence            455778889999999999999999998764110                                               


Q ss_pred             --------------HHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHcc
Q 010063          151 --------------QINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTL  216 (519)
Q Consensus       151 --------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  216 (519)
                                    .+......+....++..+|.+|...|++++|+..|++++...    ++   ...++..++.++...
T Consensus       280 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~---~~~~~~~l~~~~~~~  352 (597)
T 2xpi_A          280 NKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID----PY---NLDVYPLHLASLHES  352 (597)
T ss_dssp             CTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TT---CCTTHHHHHHHHHHH
T ss_pred             HHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC----cc---cHHHHHHHHHHHHHh
Confidence                          000001113455667777888888888888888888777543    11   122366777788888


Q ss_pred             ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 010063          217 ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSL  296 (519)
Q Consensus       217 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  296 (519)
                      |++++|+..+++++..        .|....++..+|.+|...|++++|+.+|++++++        .|....++..+|.+
T Consensus       353 g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~  416 (597)
T 2xpi_A          353 GEKNKLYLISNDLVDR--------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--------DPQFGPAWIGFAHS  416 (597)
T ss_dssp             TCHHHHHHHHHHHHHH--------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence            8888888888877643        1233567888999999999999999999999886        45567789999999


Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHH
Q 010063          297 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR  376 (519)
Q Consensus       297 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  376 (519)
                      |...|++++|+..|+++++.        .|....++..+|.+|...|++++|+.+|+++++.       .++++   .++
T Consensus       417 ~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~---~~~  478 (597)
T 2xpi_A          417 FAIEGEHDQAISAYTTAARL--------FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL-------FQYDP---LLL  478 (597)
T ss_dssp             HHHHTCHHHHHHHHHHHHHT--------TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CCCCH---HHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCh---HHH
Confidence            99999999999999999874        3444567889999999999999999999999886       33333   457


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 010063          377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS  455 (519)
Q Consensus       377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  455 (519)
                      ..+|.++...|++++|+++|+++++...+.  +..|. ...++..+|.+|...|++++|+..++++++.        .|.
T Consensus       479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~  548 (597)
T 2xpi_A          479 NELGVVAFNKSDMQTAINHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--------STN  548 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SSC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCC
Confidence            899999999999999999999999986553  23444 3788999999999999999999999999985        255


Q ss_pred             hhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH
Q 010063          456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWF  512 (519)
Q Consensus       456 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  512 (519)
                      ...++..+|.+|...|++++|..+|++++++.     ++++     ..+..|+.+|.
T Consensus       549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~-----~~~~~l~~~~~  595 (597)
T 2xpi_A          549 DANVHTAIALVYLHKKIPGLAITHLHESLAIS-----PNEI-----MASDLLKRALE  595 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH-----HHHHHHHHTTC
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCh-----HHHHHHHHHHh
Confidence            56788999999999999999999999999864     4443     34777887764

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.96  E-value=5.9e-26  Score=222.22  Aligned_cols=347  Identities=14%  Similarity=0.092  Sum_probs=256.2

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC-Cc
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD-DE  199 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~  199 (519)
                      ....|..+...|++++|++.|++++++.+.... ....+..+.++.++|.+|..+|++++|+.++++++.+...... ..
T Consensus        54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~-~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~  132 (472)
T 4g1t_A           54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHA-DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR  132 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSG-GGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCc-cccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence            445788889999999999999999998776532 2335667888999999999999999999999999998776432 33


Q ss_pred             hHHHHHHHHHHHHHHc--cccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---HhhcCCHHHHHHHHHHHHHH
Q 010063          200 PLLDAILLHMGSMYST--LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV---LGSIGRAKKAVEIYHRVITI  274 (519)
Q Consensus       200 ~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~---~~~~g~~~~A~~~~~~al~~  274 (519)
                      +..+.++..+|.++..  .+++++|+.+|++++++     .++++.   ++..++.+   +...++.++|++.+++++++
T Consensus       133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-----~p~~~~---~~~~~~~~~~~l~~~~~~~~al~~~~~al~l  204 (472)
T 4g1t_A          133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNPE---FTSGLAIASYRLDNWPPSQNAIDPLRQAIRL  204 (472)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----STTCHH---HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence            4455667888877655  46899999999999987     344444   44455554   45668889999999999987


Q ss_pred             HHHhcCCCChhhHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 010063          275 LELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE  350 (519)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  350 (519)
                              .|....++..+|..+..    .|++++|..++++++..        +|....++.++|.+|...|++++|+.
T Consensus       205 --------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--------~~~~~~~~~~lg~~~~~~~~~~~A~~  268 (472)
T 4g1t_A          205 --------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--------APGVTDVLRSAAKFYRRKDEPDKAIE  268 (472)
T ss_dssp             --------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             --------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--------CccHHHHHHHHHHHHHHcCchHHHHH
Confidence                    45556677777766554    56788999999999875        45666788999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcC-------------------ChHHHHHHHHHHHHHHHHhhCCCC
Q 010063          351 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG-------------------RGQEGRELLEECLLITEKYKGKEH  411 (519)
Q Consensus       351 ~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------------------~~~~A~~~~~~al~~~~~~~~~~~  411 (519)
                      .++++++.       .|+.   ..++.++|.+|...+                   .+++|+..+++++.+        +
T Consensus       269 ~~~~al~~-------~p~~---~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~  330 (472)
T 4g1t_A          269 LLKKALEY-------IPNN---AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--------N  330 (472)
T ss_dssp             HHHHHHHH-------STTC---HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHh-------CCCh---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--------C
Confidence            99999987       3333   445678888876432                   244555555555543        3


Q ss_pred             hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHH-HHhcCChHHHHHHHHHHHHHH---
Q 010063          412 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT-LYHLNRDKEAEKLVLEALYIR---  487 (519)
Q Consensus       412 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~---  487 (519)
                      |....++..+|.+|...|++++|+.+|++++.+     .+++......+..+|.+ +...|++++|+.+|++++++.   
T Consensus       331 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~  405 (472)
T 4g1t_A          331 DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS  405 (472)
T ss_dssp             TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred             CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence            444567889999999999999999999999973     22323333445666655 457899999999999998752   


Q ss_pred             --------------HHhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063          488 --------------EIAFGKDSLPVGKLFCFVLFGLVWFCLLLYK  518 (519)
Q Consensus       488 --------------~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~k  518 (519)
                                    ++... .+|..  +.++.+||.+|..+|++.
T Consensus       406 ~~~~~~~~~l~~~~~~~l~-~~p~~--~~~~~~LG~~~~~~g~~~  447 (472)
T 4g1t_A          406 REKEKMKDKLQKIAKMRLS-KNGAD--SEALHVLAFLQELNEKMQ  447 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HCC-C--TTHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHH-hCCCC--HHHHHHHHHHHHHcCCHH
Confidence                          11111 12322  356899999999999985

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.96  E-value=2.9e-26  Score=231.40  Aligned_cols=344  Identities=13%  Similarity=0.101  Sum_probs=246.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHH------HHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhh
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAV------KEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS  194 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  194 (519)
                      ....+..+...|++++|+..|++.....      ..........+..+.+++.+|.+|...|++++|+..|++++.....
T Consensus       153 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  232 (597)
T 2xpi_A          153 RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK  232 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch
Confidence            4445555566666666666655311100      0000000112456889999999999999999999999998765311


Q ss_pred             cC----------------------------------------------------------------CCchHHHHHHHHHH
Q 010063          195 LK----------------------------------------------------------------DDEPLLDAILLHMG  210 (519)
Q Consensus       195 ~~----------------------------------------------------------------~~~~~~~~~~~~l~  210 (519)
                      ..                                                                ...+....++..+|
T Consensus       233 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~  312 (597)
T 2xpi_A          233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKA  312 (597)
T ss_dssp             CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHH
T ss_pred             hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHH
Confidence            00                                                                00011223355566


Q ss_pred             HHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 010063          211 SMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL  290 (519)
Q Consensus       211 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  290 (519)
                      ..+...|++++|+.+|++++...     ++   ...++..++.++...|++++|...++++++.        .|....++
T Consensus       313 ~~~~~~g~~~~A~~~~~~~~~~~-----~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~  376 (597)
T 2xpi_A          313 DTLFVRSRFIDVLAITTKILEID-----PY---NLDVYPLHLASLHESGEKNKLYLISNDLVDR--------HPEKAVTW  376 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-----TT---CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTSHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHcC-----cc---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--------CcccHHHH
Confidence            66666666666666666665431     11   1334555666666666666666666666543        34557788


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCch
Q 010063          291 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS  370 (519)
Q Consensus       291 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  370 (519)
                      ..+|.+|...|++++|+.+|++++++        .|....++..++.++...|++++|++.|+++++.       .+++ 
T Consensus       377 ~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~-  440 (597)
T 2xpi_A          377 LAVGIYYLCVNKISEARRYFSKSSTM--------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL-------FQGT-  440 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-------TTTC-
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------Cccc-
Confidence            89999999999999999999999875        3455568899999999999999999999999875       2333 


Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcC
Q 010063          371 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG  450 (519)
Q Consensus       371 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  450 (519)
                        ..++..++.+|...|++++|+++|+++++..        |....++..+|.+|...|++++|+.+|+++++...+.  
T Consensus       441 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--  508 (597)
T 2xpi_A          441 --HLPYLFLGMQHMQLGNILLANEYLQSSYALF--------QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT--  508 (597)
T ss_dssp             --SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--
T ss_pred             --hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc--
Confidence              2456889999999999999999999998752        2334678999999999999999999999999976553  


Q ss_pred             CCCcch-hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063          451 PDDQSI-SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYK  518 (519)
Q Consensus       451 ~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~k  518 (519)
                      +.+|.. ..++..+|.+|...|++++|+..+++++++.     ++++     .++..+|.+|...|+++
T Consensus       509 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~~~-----~~~~~l~~~~~~~g~~~  567 (597)
T 2xpi_A          509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-----TNDA-----NVHTAIALVYLHKKIPG  567 (597)
T ss_dssp             CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----SCCH-----HHHHHHHHHHHHTTCHH
T ss_pred             ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCCh-----HHHHHHHHHHHHhCCHH
Confidence            234553 7889999999999999999999999999863     3333     55889999999999874

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.96  E-value=1.9e-25  Score=211.65  Aligned_cols=353  Identities=15%  Similarity=0.100  Sum_probs=265.6

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH--HHhcCChHHHH---------HHH
Q 010063          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALG--YVYIGDLKFVQ---------SLL  185 (519)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~---------~~~  185 (519)
                      .+..+++........+++++|..+.+++......    -..+.. ...++.+-..  ....+++..+.         ..+
T Consensus        11 ~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~----~~~~~~-~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l   85 (378)
T 3q15_A           11 RVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQ----MEEDQD-LLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL   85 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGG----BCCCHH-HHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH----hcccHH-HHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence            4555666667778999999999999987665322    111222 2233333222  22234444444         555


Q ss_pred             HHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHH
Q 010063          186 DMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV  265 (519)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  265 (519)
                      +........  .+.......++..|..+...|++++|+.++++++.+....  ++.+..+.++..+|.+|...|++++|+
T Consensus        86 ~~i~~~~~~--~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~  161 (378)
T 3q15_A           86 ETIETPQKK--LTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSM  161 (378)
T ss_dssp             HHHHGGGHH--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhccCCC--CccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            554332211  1112233356788999999999999999999999887654  445778999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH
Q 010063          266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA  345 (519)
Q Consensus       266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  345 (519)
                      .++++++++.+...+ ..+..+.++.++|.+|...|++++|+.++++++++.+..  ++.+..+.++.++|.+|...|++
T Consensus       162 ~~~~~al~~~~~~~~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~~  238 (378)
T 3q15_A          162 YHILQALDIYQNHPL-YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGDD  238 (378)
T ss_dssp             HHHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHhCCC-chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHCCCH
Confidence            999999999876531 134678899999999999999999999999999998775  23456778999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH
Q 010063          346 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY  425 (519)
Q Consensus       346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  425 (519)
                      ++|+.++++++++.+..     .++....++.++|.++...|++++|..++++++++..+.   ..+.....+..++.++
T Consensus       239 ~~A~~~~~~al~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~ly  310 (378)
T 3q15_A          239 QMAVEHFQKAAKVSREK-----VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR---SHKFYKELFLFLQAVY  310 (378)
T ss_dssp             HHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT---CCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh-----CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHH
Confidence            99999999999988764     233337788999999999999999999999999987654   2344445678889999


Q ss_pred             HhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCC
Q 010063          426 SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS  495 (519)
Q Consensus       426 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  495 (519)
                      ...|+.    ..+.+++...++.  ...+.....+..+|.+|...|++++|..+|++++++.+++...++
T Consensus       311 ~~~~~~----~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~  374 (378)
T 3q15_A          311 KETVDE----RKIHDLLSYFEKK--NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGEC  374 (378)
T ss_dssp             SSSCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hCCCcH----HHHHHHHHHHHhC--CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccch
Confidence            999983    3334444444332  345667778889999999999999999999999999988766443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.96  E-value=2.1e-27  Score=224.47  Aligned_cols=313  Identities=17%  Similarity=0.148  Sum_probs=244.4

Q ss_pred             HHHHcCChhHHHH-HHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHH
Q 010063          127 SMIMMGNKNDAID-LLQANYEAVKEQINAGNKGI-EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA  204 (519)
Q Consensus       127 ~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  204 (519)
                      .+...|++++|+. .+++++..       .+..| .....++.+|.++...|++++|+..+++++...       |....
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~   99 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQF-------EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-------PKHME   99 (368)
T ss_dssp             ------------CHHHHCCCCC-------CSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHH
T ss_pred             hhHHHHHHHHHHhhhhhHHHhc-------CCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHH
Confidence            4456789999998 88888765       22222 235678899999999999999999999998764       33455


Q ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA  284 (519)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  284 (519)
                      ++..+|.++...|++++|+..++++++..        |....++..+|.++...|++++|+..+++++....     +.+
T Consensus       100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~  166 (368)
T 1fch_A          100 AWQYLGTTQAENEQELLAISALRRCLELK--------PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-----AYA  166 (368)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-----TTG
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----CcH
Confidence            68999999999999999999999999862        33366889999999999999999999999998631     111


Q ss_pred             hhH-------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHCCCHHHHH
Q 010063          285 DLV-------------LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR--VGMAMCSLAHAKCANGNAEEAV  349 (519)
Q Consensus       285 ~~~-------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~  349 (519)
                      ...             ..+..++.++ ..|++++|+.+++++++.        .|.  ...++..+|.++...|++++|+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~l~~~~~~~g~~~~A~  237 (368)
T 1fch_A          167 HLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL--------DPTSIDPDVQCGLGVLFNLSGEYDKAV  237 (368)
T ss_dssp             GGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHH--------STTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh--------CcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence            111             1122566666 899999999999999986        233  5668899999999999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcc
Q 010063          350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK  429 (519)
Q Consensus       350 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  429 (519)
                      .++++++..       .++.   ..++..+|.++...|++++|+..+++++.+        .|....++..+|.+|...|
T Consensus       238 ~~~~~al~~-------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g  299 (368)
T 1fch_A          238 DCFTAALSV-------RPND---YLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLG  299 (368)
T ss_dssp             HHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHh-------CcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCC
Confidence            999999987       2333   346789999999999999999999999885        3445678999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhcC---CCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCC
Q 010063          430 NFVEAERLLRICLDIMTKTVG---PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  493 (519)
Q Consensus       430 ~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  493 (519)
                      ++++|+.+|++++.+.....+   ..++....++..+|.+|..+|++++|...++++++...+.++.
T Consensus       300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~  366 (368)
T 1fch_A          300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGL  366 (368)
T ss_dssp             CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhcCC
Confidence            999999999999997654322   1234557889999999999999999999999999999887764

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.95  E-value=2.6e-26  Score=213.41  Aligned_cols=297  Identities=14%  Similarity=0.133  Sum_probs=247.0

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCc
Q 010063          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (519)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (519)
                      .++..+..++..|++++|+..++++++.          .|....++..++.++...|++++|...+++++...       
T Consensus        24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~----------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------   86 (330)
T 3hym_B           24 VVVSLAERHYYNCDFKMCYKLTSVVMEK----------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-------   86 (330)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc----------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------
Confidence            3677888999999999999999999987          66667788889999999999999999999998764       


Q ss_pred             hHHHHHHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010063          200 PLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (519)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (519)
                      |....++..+|.++...| ++++|+.++++++...        |....++..+|.++...|++++|+..++++++.    
T Consensus        87 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----  154 (330)
T 3hym_B           87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE--------KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL----  154 (330)
T ss_dssp             TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC--------TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----
T ss_pred             cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----
Confidence            333456889999999999 9999999999998752        333567889999999999999999999999987    


Q ss_pred             cCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                          .|....++..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+.+++++++.
T Consensus       155 ----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  222 (330)
T 3hym_B          155 ----MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--------APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK  222 (330)
T ss_dssp             ----TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ----ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence                3444567888999999999999999999999874        4555678999999999999999999999999998


Q ss_pred             HHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH
Q 010063          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  438 (519)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  438 (519)
                      ...... ....+....++..+|.++...|++++|+.++++++.+.        |....++..+|.++...|++++|..++
T Consensus       223 ~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~  293 (330)
T 3hym_B          223 IKAIGN-EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--------PQNASTYSAIGYIHSLMGNFENAVDYF  293 (330)
T ss_dssp             HTTTSC-SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hhhccc-cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--------ccchHHHHHHHHHHHHhccHHHHHHHH
Confidence            765311 11112334567899999999999999999999999862        334568899999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCcchhHHHHHHHHHHH-hcCChH
Q 010063          439 RICLDIMTKTVGPDDQSISFPMLHLGITLY-HLNRDK  474 (519)
Q Consensus       439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~  474 (519)
                      ++++++        .|....++..++.++. ..|+.+
T Consensus       294 ~~al~~--------~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          294 HTALGL--------RRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HTTTTT--------CSCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHcc--------CCCchHHHHHHHHHHHHHhCchh
Confidence            999873        4566678889999884 556543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.95  E-value=2.3e-25  Score=221.73  Aligned_cols=314  Identities=14%  Similarity=0.118  Sum_probs=259.0

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHH----------
Q 010063          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMM----------  188 (519)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------  188 (519)
                      ..+...+..+...|++++|+..++++++.          .|..+.++..+|.++...|++++|+..++.+          
T Consensus        60 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  129 (537)
T 3fp2_A           60 VFYSNISACYISTGDLEKVIEFTTKALEI----------KPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGAS  129 (537)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC---------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHH
Confidence            44778899999999999999999999998          7778889999999999999999998877321          


Q ss_pred             --------------------------------------------------------------------------------
Q 010063          189 --------------------------------------------------------------------------------  188 (519)
Q Consensus       189 --------------------------------------------------------------------------------  188 (519)
                                                                                                      
T Consensus       130 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  209 (537)
T 3fp2_A          130 IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDE  209 (537)
T ss_dssp             --CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhh
Confidence                                                                                            


Q ss_pred             ------------Hhhhhh---cCCCchH----HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010063          189 ------------SGIVDS---LKDDEPL----LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLL  249 (519)
Q Consensus       189 ------------~~~~~~---~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  249 (519)
                                  ....+.   ..++++.    .+.++..+|.++...|++++|+..+++++..     .   |. ..++.
T Consensus       210 ~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-----~---~~-~~~~~  280 (537)
T 3fp2_A          210 GYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL-----H---PT-PNSYI  280 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C---CC-HHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc-----C---CC-chHHH
Confidence                        111111   1122221    2456888999999999999999999999886     1   22 56788


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 010063          250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  329 (519)
Q Consensus       250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  329 (519)
                      .+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+..+++++..        .|...
T Consensus       281 ~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~  344 (537)
T 3fp2_A          281 FLALTLADKENSQEFFKFFQKAVDL--------NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--------NPENV  344 (537)
T ss_dssp             HHHHHTCCSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCS
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCH
Confidence            9999999999999999999999987        4556788999999999999999999999999985        23444


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 010063          330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  409 (519)
Q Consensus       330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  409 (519)
                      .++..+|.++...|++++|+.+++++++.       .++.+   .++..+|.++...|++++|+..+++++.......  
T Consensus       345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--  412 (537)
T 3fp2_A          345 YPYIQLACLLYKQGKFTESEAFFNETKLK-------FPTLP---EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE--  412 (537)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCT---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS--
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCh---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch--
Confidence            67889999999999999999999999987       23333   3568899999999999999999999999875532  


Q ss_pred             CChhHHHHHHHHHHHHHhc----------cCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHH
Q 010063          410 EHPSFVTHLLNLAASYSRS----------KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL  479 (519)
Q Consensus       410 ~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  479 (519)
                      ........+..+|.++...          |++++|+.+|++++..        +|....++..+|.+|...|++++|..+
T Consensus       413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~  484 (537)
T 3fp2_A          413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAIEL  484 (537)
T ss_dssp             SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence            2222334567788899998          9999999999999985        355567889999999999999999999


Q ss_pred             HHHHHHHH
Q 010063          480 VLEALYIR  487 (519)
Q Consensus       480 ~~~a~~~~  487 (519)
                      |++++++.
T Consensus       485 ~~~al~~~  492 (537)
T 3fp2_A          485 FEDSAILA  492 (537)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            99999875

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.95  E-value=1.7e-24  Score=205.63  Aligned_cols=273  Identities=12%  Similarity=0.066  Sum_probs=231.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCH
Q 010063          163 AILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI  242 (519)
Q Consensus       163 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  242 (519)
                      ..++..|..+...|++++|+..+++++.+.... ++.+..+.++..+|.+|...|++++|+.++++++++.+.. +...+
T Consensus       104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~  181 (383)
T 3ulq_A          104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFV-KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYNI  181 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccchH
Confidence            345669999999999999999999999987764 4556788889999999999999999999999999998775 22256


Q ss_pred             HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC
Q 010063          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (519)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (519)
                      ..+.++.++|.+|...|++++|+.++++++++.+...  +.+..+.++.++|.+|..+|++++|+.++++++++.+... 
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-  258 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN-  258 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc-
Confidence            7889999999999999999999999999999988763  5667788999999999999999999999999999987752 


Q ss_pred             CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063          323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (519)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (519)
                       +.|....++.++|.++...|++++|+.++++++++..+.    .++.. ...+..++.++...|++    ..+++++..
T Consensus       259 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~----~~~~~al~~  328 (383)
T 3ulq_A          259 -ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA----GDVIY-LSEFEFLKSLYLSGPDE----EAIQGFFDF  328 (383)
T ss_dssp             -CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----TCHHH-HHHHHHHHHHHTSSCCH----HHHHHHHHH
T ss_pred             -cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc----CCHHH-HHHHHHHHHHHhCCCcH----HHHHHHHHH
Confidence             227778899999999999999999999999999998764    23333 33367899999999995    445555555


Q ss_pred             HHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          403 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD  452 (519)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  452 (519)
                      .++.  ...+....++..+|.+|...|++++|..++++++.+.+++...+
T Consensus       329 ~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~~e  376 (383)
T 3ulq_A          329 LESK--MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGV  376 (383)
T ss_dssp             HHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSSCC
T ss_pred             HHHC--cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhccc
Confidence            5544  35677788899999999999999999999999999987765443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.95  E-value=1.5e-25  Score=206.43  Aligned_cols=285  Identities=21%  Similarity=0.246  Sum_probs=235.1

Q ss_pred             hcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010063          194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT  273 (519)
Q Consensus       194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  273 (519)
                      ..+.++|....++..+|.++...|++++|+.++++++++.....+++.+....++..+|.++...|++++|+.+++++++
T Consensus        18 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   97 (311)
T 3nf1_A           18 GGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA   97 (311)
T ss_dssp             SSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34677888999999999999999999999999999999998887777888999999999999999999999999999999


Q ss_pred             HHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 010063          274 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYK  353 (519)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  353 (519)
                      +.+...+.+.+....++..+|.++...|++++|+.++++++++.+...+.+++....++.++|.++...|++++|+.+++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  177 (311)
T 3nf1_A           98 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ  177 (311)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99888777788899999999999999999999999999999999888888889999999999999999999999999999


Q ss_pred             HHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh-CCCChh------HHHHHHHHHHHHH
Q 010063          354 KALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK-GKEHPS------FVTHLLNLAASYS  426 (519)
Q Consensus       354 ~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~------~~~~~~~la~~~~  426 (519)
                      ++++...+.  .+++++....++..+|.++...|++++|+.++++++.+..... +...+.      ....+..++..+.
T Consensus       178 ~a~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (311)
T 3nf1_A          178 RALEIYQTK--LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQK  255 (311)
T ss_dssp             HHHHHHHHT--SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-----
T ss_pred             HHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchh
Confidence            999998764  3456777788899999999999999999999999998765421 111111      2233344445555


Q ss_pred             hccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010063          427 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  488 (519)
Q Consensus       427 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  488 (519)
                      ..+.+.+|...++++..        .+|....++..+|.+|...|++++|..++++++++..
T Consensus       256 ~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  309 (311)
T 3nf1_A          256 DGTSFGEYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK  309 (311)
T ss_dssp             --CCSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            56666667777776654        5688889999999999999999999999999998763

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.95  E-value=3.7e-25  Score=208.15  Aligned_cols=297  Identities=13%  Similarity=0.121  Sum_probs=243.1

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC
Q 010063          161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT  240 (519)
Q Consensus       161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  240 (519)
                      .+..+..+|..+...|++++|+..+++++...       |....++..+|.++...|++++|+..++++++..       
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------   67 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-------   67 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------
Confidence            35678999999999999999999999998764       3334568999999999999999999999999862       


Q ss_pred             CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCh---hhHHHHHHH------------HHHHHhCCCHHH
Q 010063          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA---DLVLPLFSL------------GSLFIKEGKAVD  305 (519)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~l------------a~~~~~~g~~~~  305 (519)
                       |....++..+|.++...|++++|+..++++++.        .|   ....++..+            |.++...|++++
T Consensus        68 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  138 (359)
T 3ieg_A           68 -MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTA  138 (359)
T ss_dssp             -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             -CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence             333577899999999999999999999999875        33   444455444            799999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH
Q 010063          306 AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI  385 (519)
Q Consensus       306 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~  385 (519)
                      |+..++++++.        .|....++..+|.++...|++++|+..+++++..       .++.   ..++..+|.++..
T Consensus       139 A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~~---~~~~~~la~~~~~  200 (359)
T 3ieg_A          139 AITFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL-------KSDN---TEAFYKISTLYYQ  200 (359)
T ss_dssp             HHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------CSCC---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHH
Confidence            99999999985        3455578899999999999999999999999876       3333   3467899999999


Q ss_pred             cCChHHHHHHHHHHHHHHHHhhCCCChhHHHH---------HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcc-
Q 010063          386 VGRGQEGRELLEECLLITEKYKGKEHPSFVTH---------LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-  455 (519)
Q Consensus       386 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-  455 (519)
                      .|++++|+..+++++...     ++++.....         ...+|.++...|++++|+..+++++...     ++++. 
T Consensus       201 ~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~  270 (359)
T 3ieg_A          201 LGDHELSLSEVRECLKLD-----QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-----PSVAEY  270 (359)
T ss_dssp             HTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSSHHH
T ss_pred             cCCHHHHHHHHHHHHhhC-----ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCchHH
Confidence            999999999999998753     333333222         3355899999999999999999999852     33332 


Q ss_pred             hhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063          456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYK  518 (519)
Q Consensus       456 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~k  518 (519)
                      ....+..+|.++...|++++|+.++++++++.     ++++     ..+..+|.++..+|++.
T Consensus       271 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~-----~~~~~~~~~~~~~g~~~  323 (359)
T 3ieg_A          271 TVRSKERICHCFSKDEKPVEAIRICSEVLQME-----PDNV-----NALKDRAEAYLIEEMYD  323 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH-----HHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----cccH-----HHHHHHHHHHHHcCCHH
Confidence            23457789999999999999999999999862     3333     45889999999999874

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.95  E-value=9.1e-27  Score=219.88  Aligned_cols=293  Identities=16%  Similarity=0.089  Sum_probs=229.6

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCC
Q 010063          160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK  239 (519)
Q Consensus       160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  239 (519)
                      ..+..++.+|..+...|++++|+..+++++...       |....++..+|.++...|++++|+..|++++++.      
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------  129 (365)
T 4eqf_A           63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-------PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ------  129 (365)
T ss_dssp             TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------
Confidence            445668999999999999999999999998875       3345679999999999999999999999999862      


Q ss_pred             CCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCh--hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063          240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA--DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (519)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (519)
                        |....++..+|.+|...|++++|+.++++++++..........  .....+..+|.++...|++++|+.++++++++.
T Consensus       130 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  207 (365)
T 4eqf_A          130 --PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN  207 (365)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS
T ss_pred             --CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence              3336789999999999999999999999999974432211000  123445667999999999999999999999862


Q ss_pred             HHhcCCCChh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHH
Q 010063          318 TKVYGENDGR--VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL  395 (519)
Q Consensus       318 ~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  395 (519)
                              |.  ...++.++|.++...|++++|+.+++++++.       .++.   ..++.++|.++...|++++|+..
T Consensus       208 --------p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~p~~---~~~~~~l~~~~~~~g~~~~A~~~  269 (365)
T 4eqf_A          208 --------GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-------RPED---YSLWNRLGATLANGDRSEEAVEA  269 (365)
T ss_dssp             --------CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             --------cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHHcCCHHHHHHH
Confidence                    33  4568899999999999999999999999987       2333   44678999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcc----hhHHHHHHHHHHHhcC
Q 010063          396 LEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS----ISFPMLHLGITLYHLN  471 (519)
Q Consensus       396 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~~~~~g  471 (519)
                      |++++.+        +|....++..+|.+|...|++++|+.+|++++.+.....++.++.    ...++..++.++..+|
T Consensus       270 ~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  341 (365)
T 4eqf_A          270 YTRALEI--------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD  341 (365)
T ss_dssp             HHHHHHH--------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred             HHHHHhc--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence            9999986        345577899999999999999999999999999876654433222    3567899999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHhcCC
Q 010063          472 RDKEAEKLVLEALYIREIAFGK  493 (519)
Q Consensus       472 ~~~~A~~~~~~a~~~~~~~~~~  493 (519)
                      +.+.|....++.++..++.++.
T Consensus       342 ~~~~a~~~~~~~l~~~~~~~~~  363 (365)
T 4eqf_A          342 QPELFQAANLGDLDVLLRAFNL  363 (365)
T ss_dssp             CHHHHHHHHTTCCGGGTTTTTC
T ss_pred             cHHHHHHHHHhhHHHHHHhcCC
Confidence            9999999988877776655543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.95  E-value=1e-26  Score=216.25  Aligned_cols=300  Identities=14%  Similarity=0.134  Sum_probs=245.8

Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcC
Q 010063          159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG  238 (519)
Q Consensus       159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  238 (519)
                      +..+.++..+|..+...|++++|+..+++++...       |....++..++.++...|++++|+..++++++..     
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----   86 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-------PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-----   86 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-----
Confidence            3345577889999999999999999999988764       2223346778889999999999999999998852     


Q ss_pred             CCCHHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063          239 KTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (519)
Q Consensus       239 ~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (519)
                         |....++..+|.++...| ++++|+.+++++++.        .|....++..+|.++...|++++|+..++++++..
T Consensus        87 ---~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  155 (330)
T 3hym_B           87 ---PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM  155 (330)
T ss_dssp             ---TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred             ---cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Confidence               333567889999999999 999999999999875        45567789999999999999999999999999863


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010063          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  397 (519)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (519)
                              |....++..+|.++...|++++|+.+++++++.       .++.   ..++..+|.++...|++++|+..++
T Consensus       156 --------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~  217 (330)
T 3hym_B          156 --------KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI-------APED---PFVMHEVGVVAFQNGEWKTAEKWFL  217 (330)
T ss_dssp             --------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             --------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-------CCCC---hHHHHHHHHHHHHcccHHHHHHHHH
Confidence                    333446777999999999999999999999876       2333   3567899999999999999999999


Q ss_pred             HHHHHHHHhhCCCC-hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHH
Q 010063          398 ECLLITEKYKGKEH-PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA  476 (519)
Q Consensus       398 ~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  476 (519)
                      +++.+......... +....++..+|.++...|++++|+.++++++.+        .|....++..+|.++...|++++|
T Consensus       218 ~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A  289 (330)
T 3hym_B          218 DALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--------IPQNASTYSAIGYIHSLMGNFENA  289 (330)
T ss_dssp             HHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--------CccchHHHHHHHHHHHHhccHHHH
Confidence            99998765433221 444578899999999999999999999999985        244567889999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHH-HHhhhc
Q 010063          477 EKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVW-FCLLLY  517 (519)
Q Consensus       477 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~lg~~  517 (519)
                      ..++++++++.     ++++     ..+..+|.++ ..+|+.
T Consensus       290 ~~~~~~al~~~-----p~~~-----~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          290 VDYFHTALGLR-----RDDT-----FSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             HHHHHTTTTTC-----SCCH-----HHHHHHHHHHHTTTTC-
T ss_pred             HHHHHHHHccC-----CCch-----HHHHHHHHHHHHHhCch
Confidence            99999998743     3333     4477889988 555553

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.95  E-value=3.8e-26  Score=215.63  Aligned_cols=286  Identities=15%  Similarity=0.042  Sum_probs=226.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      ++..+..+...|++++|+.+|+++++.          .|..+.++..+|.++...|++++|+..+++++...       |
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p  130 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQ----------DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-------P  130 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh----------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------C
Confidence            677899999999999999999999998          67778899999999999999999999999998874       3


Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI--LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (519)
                      ....++..+|.+|...|++++|+..+++++++..........  .....+..+|.++...|++++|+.+++++++.    
T Consensus       131 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----  206 (365)
T 4eqf_A          131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ----  206 (365)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH----
T ss_pred             CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh----
Confidence            345579999999999999999999999999875432111100  12344566799999999999999999999987    


Q ss_pred             cCCCChh--hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010063          279 RGTESAD--LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  356 (519)
Q Consensus       279 ~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  356 (519)
                          .|.  ...++..+|.++...|++++|+.++++++++        .|....++.++|.++...|++++|+.++++++
T Consensus       207 ----~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  274 (365)
T 4eqf_A          207 ----NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGDRSEEAVEAYTRAL  274 (365)
T ss_dssp             ----SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ----CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                333  5678999999999999999999999999986        35556689999999999999999999999999


Q ss_pred             HHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh----HHHHHHHHHHHHHhccCHH
Q 010063          357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS----FVTHLLNLAASYSRSKNFV  432 (519)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~  432 (519)
                      +.       .|+.   ..++.++|.++...|++++|+.+|++++.+.....++.++.    ...++..++.++...|+.+
T Consensus       275 ~~-------~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  344 (365)
T 4eqf_A          275 EI-------QPGF---IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE  344 (365)
T ss_dssp             HH-------CTTC---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred             hc-------CCCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence            87       2333   45678999999999999999999999999886654332221    3578899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 010063          433 EAERLLRICLDIMTKTV  449 (519)
Q Consensus       433 ~A~~~~~~al~~~~~~~  449 (519)
                      .|....++.+....+.+
T Consensus       345 ~a~~~~~~~l~~~~~~~  361 (365)
T 4eqf_A          345 LFQAANLGDLDVLLRAF  361 (365)
T ss_dssp             HHHHHHTTCCGGGTTTT
T ss_pred             HHHHHHHhhHHHHHHhc
Confidence            99988887666554433

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.95  E-value=7.6e-25  Score=201.67  Aligned_cols=283  Identities=21%  Similarity=0.273  Sum_probs=233.6

Q ss_pred             CCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcC-CCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Q 010063          155 GNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK-DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL  233 (519)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  233 (519)
                      +.++|..+.++..+|.++...|++++|+.++++++.+..... .+.+....++..+|.++...|++++|+.++++++.+.
T Consensus        20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   99 (311)
T 3nf1_A           20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR   99 (311)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            556888999999999999999999999999999998876542 3567888889999999999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010063          234 ESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI  313 (519)
Q Consensus       234 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  313 (519)
                      +...+.+++....++..+|.++...|++++|+.++++++++.+...+.+++....++..+|.++...|++++|+.+++++
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  179 (311)
T 3nf1_A          100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA  179 (311)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            88877888999999999999999999999999999999999988877778889999999999999999999999999999


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC-----CCCchHHHHHHHHHHHHHHHcCC
Q 010063          314 LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM-----SLDDSIMENMRIDLAELLHIVGR  388 (519)
Q Consensus       314 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~  388 (519)
                      +++.+...+++++....++..+|.++...|++++|+.+++++++........     ..........+..++..+...+.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (311)
T 3nf1_A          180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS  259 (311)
T ss_dssp             HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence            9999888777889999999999999999999999999999999886543110     01111123334445555666677


Q ss_pred             hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010063          389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (519)
Q Consensus       389 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (519)
                      +.+|...++++..        .++....++..+|.+|...|++++|..++++++++.
T Consensus       260 ~~~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  308 (311)
T 3nf1_A          260 FGEYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR  308 (311)
T ss_dssp             SCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence            7777777777654        568888999999999999999999999999999874

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.94  E-value=4.5e-25  Score=208.48  Aligned_cols=281  Identities=16%  Similarity=0.095  Sum_probs=233.8

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      ++..+..+...|++++|+..++++++.          .|..+.++..+|.++...|++++|+..+++++...       |
T Consensus        67 ~~~~~~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------~  129 (368)
T 1fch_A           67 PFEEGLRRLQEGDLPNAVLLFEAAVQQ----------DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-------P  129 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHS----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-------C
Confidence            667899999999999999999999987          67778899999999999999999999999998875       3


Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHH-------------HHHHHHHHHHHhhcCCHHHHHHH
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILL-------------VTSLLGMAKVLGSIGRAKKAVEI  267 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-------------~~~~~~la~~~~~~g~~~~A~~~  267 (519)
                      ....++..+|.++...|++++|+..+++++....     +.+..             ......++.++ ..|++++|+.+
T Consensus       130 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~  203 (368)
T 1fch_A          130 DNQTALMALAVSFTNESLQRQACEILRDWLRYTP-----AYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKEL  203 (368)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-----TTGGGCC---------------CTTHHHH-HHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----CcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHH
Confidence            3445689999999999999999999999987532     21111             11122466666 89999999999


Q ss_pred             HHHHHHHHHHhcCCCChh--hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH
Q 010063          268 YHRVITILELNRGTESAD--LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA  345 (519)
Q Consensus       268 ~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  345 (519)
                      ++++++.        .|.  ...++..+|.++...|++++|+.++++++.+        .|....++.++|.++...|++
T Consensus       204 ~~~a~~~--------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~  267 (368)
T 1fch_A          204 FLAAVRL--------DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLGATLANGNQS  267 (368)
T ss_dssp             HHHHHHH--------STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHh--------CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHcCCH
Confidence            9999987        333  5788999999999999999999999999986        345566899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC---CCChhHHHHHHHHH
Q 010063          346 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG---KEHPSFVTHLLNLA  422 (519)
Q Consensus       346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la  422 (519)
                      ++|+..++++++.       .++.   ..++..+|.++...|++++|+.++++++.+.....+   ..++....++..+|
T Consensus       268 ~~A~~~~~~al~~-------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~  337 (368)
T 1fch_A          268 EEAVAAYRRALEL-------QPGY---IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR  337 (368)
T ss_dssp             HHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-------CCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHH
Confidence            9999999999987       2333   356789999999999999999999999998754321   11233467899999


Q ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHhcC
Q 010063          423 ASYSRSKNFVEAERLLRICLDIMTKTVG  450 (519)
Q Consensus       423 ~~~~~~g~~~~A~~~~~~al~~~~~~~~  450 (519)
                      .++...|++++|..+++++++.+.+.++
T Consensus       338 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~  365 (368)
T 1fch_A          338 LALSMLGQSDAYGAADARDLSTLLTMFG  365 (368)
T ss_dssp             HHHHHHTCGGGHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHhCChHhHHHhHHHHHHHHHHhcC
Confidence            9999999999999999999998877654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.94  E-value=3.2e-23  Score=196.30  Aligned_cols=271  Identities=13%  Similarity=0.114  Sum_probs=225.6

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCC
Q 010063          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS  241 (519)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  241 (519)
                      ...++..|..+...|++++|+..+++++.+.... ++.+..+.++..+|.+|...|++++|+.++++++++..... ...
T Consensus       101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~~~  178 (378)
T 3q15_A          101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV-SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP-LYS  178 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-TCH
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC-CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC-Cch
Confidence            3467789999999999999999999999988764 45578888999999999999999999999999999987641 123


Q ss_pred             HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (519)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (519)
                      +..+.++.++|.+|...|++++|+.++++++++.+...  +.+..+.++.++|.+|...|++++|+.++++++++.+.. 
T Consensus       179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~-  255 (378)
T 3q15_A          179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ--NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK-  255 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-
Confidence            56788999999999999999999999999999987763  445677899999999999999999999999999998876 


Q ss_pred             CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010063          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  401 (519)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  401 (519)
                        .+|....++.++|.++...|++++|+.++++++++..+.    .++.. ...+..++.++...|+.    ..+.+++.
T Consensus       256 --~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~-~~~~~~l~~ly~~~~~~----~~~~~al~  324 (378)
T 3q15_A          256 --VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR----SHKFY-KELFLFLQAVYKETVDE----RKIHDLLS  324 (378)
T ss_dssp             --CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT----CCSCH-HHHHHHHHHHHSSSCCH----HHHHHHHH
T ss_pred             --CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc----CCHHH-HHHHHHHHHHHhCCCcH----HHHHHHHH
Confidence              456668899999999999999999999999999986542    22222 33457788888888883    33344444


Q ss_pred             HHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcC
Q 010063          402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG  450 (519)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  450 (519)
                      ..++.  ...+.....+..+|.+|...|++++|..+|++++++.+++..
T Consensus       325 ~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~  371 (378)
T 3q15_A          325 YFEKK--NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK  371 (378)
T ss_dssp             HHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhC--CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence            44332  345667788889999999999999999999999998877643

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.94  E-value=1.8e-24  Score=211.59  Aligned_cols=310  Identities=11%  Similarity=-0.002  Sum_probs=232.8

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcC--CCchHHHHHHHH
Q 010063          131 MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK--DDEPLLDAILLH  208 (519)
Q Consensus       131 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~  208 (519)
                      .++.+.++..+++.+....+    ..+.+..+.+++.+|.++..+|++++|++.|++++++.....  ..++....++.+
T Consensus        24 l~~~~~~l~~~e~~~~~~~~----~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~n   99 (472)
T 4g1t_A           24 LMEGENSLDDFEDKVFYRTE----FQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGN   99 (472)
T ss_dssp             TTTTCCCHHHHHHHHHHHTT----SCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH----hCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHH
Confidence            34555566666555443221    223444567889999999999999999999999998865532  234666777999


Q ss_pred             HHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 010063          209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI--GRAKKAVEIYHRVITILELNRGTESADL  286 (519)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~  286 (519)
                      +|.+|..+|++++|+.++++++++.+...++.++....++.++|.++...  +++++|+.+|++++++        .|..
T Consensus       100 la~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--------~p~~  171 (472)
T 4g1t_A          100 YAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--------KPKN  171 (472)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------STTC
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--------CCCC
Confidence            99999999999999999999999998876666666677888888777665  5799999999999987        3445


Q ss_pred             HHHHHHHHHH---HHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHH
Q 010063          287 VLPLFSLGSL---FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC----ANGNAEEAVELYKKALRVI  359 (519)
Q Consensus       287 ~~~~~~la~~---~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~  359 (519)
                      ..++..++.+   +...++.++|+..+++++++        +|....++.++|..+.    ..|++++|..++++++.. 
T Consensus       172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-  242 (472)
T 4g1t_A          172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-  242 (472)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-
Confidence            5666666665   45578889999999999986        3444455666666554    456788999999999887 


Q ss_pred             HhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcc----------
Q 010063          360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK----------  429 (519)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----------  429 (519)
                            .++.   ..++.++|.+|...|++++|+..+++++++        +|....++..+|.+|...+          
T Consensus       243 ------~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~  305 (472)
T 4g1t_A          243 ------APGV---TDVLRSAAKFYRRKDEPDKAIELLKKALEY--------IPNNAYLHCQIGCCYRAKVFQVMNLRENG  305 (472)
T ss_dssp             ------CSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             ------CccH---HHHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence                  3333   345688999999999999999999999885        4556678888898886532          


Q ss_pred             ---------CHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063          430 ---------NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (519)
Q Consensus       430 ---------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (519)
                               .+++|+..+++++.+        +|....++..+|.+|...|++++|+.+|++++++
T Consensus       306 ~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~  363 (472)
T 4g1t_A          306 MYGKRKLLELIGHAVAHLKKADEA--------NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK  363 (472)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHH--------CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhhc--------CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence                     345566666666553        3555667889999999999999999999999874

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.94  E-value=1.7e-24  Score=196.34  Aligned_cols=270  Identities=20%  Similarity=0.189  Sum_probs=227.3

Q ss_pred             HHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 010063          213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS  292 (519)
Q Consensus       213 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  292 (519)
                      ....|++++|+.++++++++..+..+.+++....++..+|.++...|++++|+.++++++++.+...+++++....++.+
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~   90 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN   90 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            35689999999999999999999888888999999999999999999999999999999999998877788999999999


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHH
Q 010063          293 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM  372 (519)
Q Consensus       293 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  372 (519)
                      +|.++...|++++|+.++++++.+.++..++++|....++.++|.++...|++++|+.+++++++.....  .+++++..
T Consensus        91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~  168 (283)
T 3edt_B           91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR--LGPDDPNV  168 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH--SCTTCHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCCCHHH
Confidence            9999999999999999999999999999888889999999999999999999999999999999998764  45667778


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCC
Q 010063          373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK-GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP  451 (519)
Q Consensus       373 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  451 (519)
                      ..++.++|.++...|++++|+.++++++.+..... +...+.....+..++..+...+....+.. +.++....+. .+.
T Consensus       169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~  246 (283)
T 3edt_B          169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKA-CKV  246 (283)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------C-CCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHh-cCC
Confidence            88999999999999999999999999999865532 22344445566677777776666555444 4444443333 355


Q ss_pred             CCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063          452 DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (519)
Q Consensus       452 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (519)
                      .+|....++..+|.+|..+|++++|..++++++++
T Consensus       247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            67888999999999999999999999999999875

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.93  E-value=5.6e-24  Score=192.89  Aligned_cols=270  Identities=20%  Similarity=0.229  Sum_probs=224.0

Q ss_pred             HHhcCChHHHHHHHHHHHhhhhhc-CCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010063          172 YVYIGDLKFVQSLLDMMSGIVDSL-KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG  250 (519)
Q Consensus       172 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  250 (519)
                      ....|++++|+.++++++...... +.++|....++..+|.++...|++++|+.++++++.+.+...+++++....++..
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~   90 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN   90 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            346899999999999999988664 3456888899999999999999999999999999999998888888999999999


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 010063          251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  330 (519)
Q Consensus       251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  330 (519)
                      +|.++...|++++|+.++++++++.++..++++|....++.++|.++...|++++|+.++++++++.+...+++++....
T Consensus        91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  170 (283)
T 3edt_B           91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK  170 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            99999999999999999999999999888888899999999999999999999999999999999999988888899999


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 010063          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  410 (519)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  410 (519)
                      ++.++|.++...|++++|+.+++++++....... +...+.....+..++..+...+....+.. +.++....... +..
T Consensus       171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~  247 (283)
T 3edt_B          171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF-GSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKAC-KVD  247 (283)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS-SSCCSSCCCHHHHHHHHHHTTCCCCC-------------CC-CCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC-CCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhc-CCC
Confidence            9999999999999999999999999998765421 22222223344566666666666555444 44444444333 456


Q ss_pred             ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063          411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (519)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (519)
                      ++....++..+|.+|...|++++|..++++++++
T Consensus       248 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          248 SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            7888999999999999999999999999999874

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.93  E-value=1.5e-22  Score=191.51  Aligned_cols=313  Identities=11%  Similarity=0.056  Sum_probs=249.5

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC
Q 010063          161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT  240 (519)
Q Consensus       161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  240 (519)
                      ...++..+|.++...|++++|...+++++....  ..+......++..+|.++...|++++|...+++++.+....  .+
T Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~   88 (373)
T 1hz4_A           13 HAEFNALRAQVAINDGNPDEAERLAKLALEELP--PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--DV   88 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC--TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--Cc
Confidence            456778889999999999999999999987652  12223455678899999999999999999999999988764  23


Q ss_pred             CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (519)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (519)
                      ......++.++|.++...|++++|+.++++++++.+...++.++....++.++|.++...|++++|..++++++.+....
T Consensus        89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  168 (373)
T 1hz4_A           89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY  168 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence            34556778899999999999999999999999998887655557778889999999999999999999999999986543


Q ss_pred             cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010063          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL  400 (519)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  400 (519)
                         .++....++.++|.++...|++++|..++++++.+....   +............++.++...|++++|..++++++
T Consensus       169 ---~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~  242 (373)
T 1hz4_A          169 ---QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG---KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA  242 (373)
T ss_dssp             ---CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             ---CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence               223355688899999999999999999999999886442   11111222222345667889999999999999887


Q ss_pred             HHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHH
Q 010063          401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV  480 (519)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  480 (519)
                      ....    .........+..+|.++...|++++|...+++++......  +..+....++..+|.++...|++++|...+
T Consensus       243 ~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l  316 (373)
T 1hz4_A          243 KPEF----ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDAQRVL  316 (373)
T ss_dssp             CCCC----TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CCCC----CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--cchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            5321    1112223356789999999999999999999999987763  222345567889999999999999999999


Q ss_pred             HHHHHHHHH
Q 010063          481 LEALYIREI  489 (519)
Q Consensus       481 ~~a~~~~~~  489 (519)
                      ++++.+...
T Consensus       317 ~~al~~~~~  325 (373)
T 1hz4_A          317 LDALKLANR  325 (373)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcc
Confidence            999998864

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.93  E-value=1.6e-24  Score=201.12  Aligned_cols=286  Identities=14%  Similarity=0.088  Sum_probs=230.9

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCC
Q 010063          160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK  239 (519)
Q Consensus       160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  239 (519)
                      .....+..+|..+...|++++|+..+++++...       |....++..+|.++...|++++|+..++++++..      
T Consensus        19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------   85 (327)
T 3cv0_A           19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAA-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD------   85 (327)
T ss_dssp             GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred             hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------
Confidence            455678899999999999999999999998764       3344568899999999999999999999998862      


Q ss_pred             CCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH--------------HH-HHHhCCCHH
Q 010063          240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSL--------------GS-LFIKEGKAV  304 (519)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--------------a~-~~~~~g~~~  304 (519)
                        |....++..+|.++...|++++|+..++++++..        |.....+..+              +. ++...|+++
T Consensus        86 --~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (327)
T 3cv0_A           86 --PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--------PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR  155 (327)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--------TTTTTC--------------------CCTTSHHHHH
T ss_pred             --cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHH
Confidence              2336678899999999999999999999998762        2222222222              44 588889999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHH
Q 010063          305 DAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH  384 (519)
Q Consensus       305 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~  384 (519)
                      +|+.+++++++.        .|....++..+|.++...|++++|+.+++++++.       .++.   ..++..+|.++.
T Consensus       156 ~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------~~~~---~~~~~~l~~~~~  217 (327)
T 3cv0_A          156 ECRTLLHAALEM--------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL-------RPDD---AQLWNKLGATLA  217 (327)
T ss_dssp             HHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-------CCCc---HHHHHHHHHHHH
Confidence            999999999985        3445578899999999999999999999999987       2333   346789999999


Q ss_pred             HcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCC----cchhHHH
Q 010063          385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD----QSISFPM  460 (519)
Q Consensus       385 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~  460 (519)
                      ..|++++|+..+++++..        .|....++..+|.++...|++++|+.++++++.+.....+...    .....++
T Consensus       218 ~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  289 (327)
T 3cv0_A          218 NGNRPQEALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMW  289 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHH
Confidence            999999999999999885        2344568889999999999999999999999986532111111    1156788


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCC
Q 010063          461 LHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD  494 (519)
Q Consensus       461 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  494 (519)
                      ..+|.++...|++++|...++++++...+.++.+
T Consensus       290 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~  323 (327)
T 3cv0_A          290 DFFRMLLNVMNRPDLVELTYAQNVEPFAKEFGLQ  323 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTTSS
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhcchhhhHH
Confidence            9999999999999999999999999988776643

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.93  E-value=4.3e-24  Score=198.15  Aligned_cols=282  Identities=12%  Similarity=0.039  Sum_probs=229.6

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      ++..+..+...|++++|+.+++++++.          .|..+.++..+|.++...|++++|+..+++++...       |
T Consensus        24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~   86 (327)
T 3cv0_A           24 PMEEGLSMLKLANLAEAALAFEAVCQA----------APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------P   86 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------c
Confidence            677888999999999999999999987          67778899999999999999999999999998874       3


Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHH----------HHHHH-HH-HHhhcCCHHHHHHHH
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT----------SLLGM-AK-VLGSIGRAKKAVEIY  268 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----------~~~~l-a~-~~~~~g~~~~A~~~~  268 (519)
                      ....++..+|.++...|++++|+..+++++....     .......          ....+ +. ++...|++++|+.++
T Consensus        87 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  161 (327)
T 3cv0_A           87 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQP-----QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLL  161 (327)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-----TTTTC--------------------CCTTSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHH
Confidence            3345688999999999999999999999987532     1111110          01122 44 588899999999999


Q ss_pred             HHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHH
Q 010063          269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA  348 (519)
Q Consensus       269 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  348 (519)
                      +++++.        .|....++..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|
T Consensus       162 ~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A  225 (327)
T 3cv0_A          162 HAALEM--------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLGATLANGNRPQEA  225 (327)
T ss_dssp             HHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHH
Confidence            999986        4556788999999999999999999999999985        345556889999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC----ChhHHHHHHHHHHH
Q 010063          349 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE----HPSFVTHLLNLAAS  424 (519)
Q Consensus       349 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~la~~  424 (519)
                      +.+++++++.       .++.   ..++..+|.++...|++++|+..+++++.+.....+..    ......++..+|.+
T Consensus       226 ~~~~~~a~~~-------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  295 (327)
T 3cv0_A          226 LDAYNRALDI-------NPGY---VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML  295 (327)
T ss_dssp             HHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHc-------CCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence            9999999987       2333   34668899999999999999999999998764321111    11156789999999


Q ss_pred             HHhccCHHHHHHHHHHHHHHHHHhcC
Q 010063          425 YSRSKNFVEAERLLRICLDIMTKTVG  450 (519)
Q Consensus       425 ~~~~g~~~~A~~~~~~al~~~~~~~~  450 (519)
                      +...|++++|...++++++...+..+
T Consensus       296 ~~~~g~~~~A~~~~~~~l~~~~~~~~  321 (327)
T 3cv0_A          296 LNVMNRPDLVELTYAQNVEPFAKEFG  321 (327)
T ss_dssp             HHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred             HHhcCCHHHHHHHHHHHHHhcchhhh
Confidence            99999999999999999998776544

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.92  E-value=6.3e-22  Score=187.20  Aligned_cols=310  Identities=12%  Similarity=0.041  Sum_probs=245.0

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (519)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (519)
                      .......+..+...|++++|+.++++++...     ...+......++..+|.++...|++++|...+++++.+....+ 
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-   87 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEEL-----PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD-   87 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-----CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC-
Confidence            3446667788889999999999999998862     1111223556788999999999999999999999999887643 


Q ss_pred             CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010063          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (519)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (519)
                      +......++..+|.++...|++++|+.++++++.+.....+..++....++.++|.++...|++++|..++++++++...
T Consensus        88 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A           88 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            33445666889999999999999999999999999887655545677888999999999999999999999999988654


Q ss_pred             hcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH--HHHHHHHHHHCCCHHHHHHHHHHH
Q 010063          278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA--MCSLAHAKCANGNAEEAVELYKKA  355 (519)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~a  355 (519)
                      ..   ++....++..+|.++...|++++|..++++++.+....   ..+.....  ...++.++...|++++|..+++++
T Consensus       168 ~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  241 (373)
T 1hz4_A          168 YQ---PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG---KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT  241 (373)
T ss_dssp             SC---GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cC---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            32   33356788999999999999999999999999876432   12211112  224556688999999999999988


Q ss_pred             HHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHH
Q 010063          356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE  435 (519)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  435 (519)
                      +...      ..........+..++.++...|++++|...+++++.......  ..+....++..+|.++...|++++|.
T Consensus       242 ~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~  313 (373)
T 1hz4_A          242 AKPE------FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR--LMSDLNRNLLLLNQLYWQAGRKSDAQ  313 (373)
T ss_dssp             CCCC------CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCC------CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc--chhhHHHHHHHHHHHHHHhCCHHHHH
Confidence            7531      111122223457899999999999999999999999877642  23345568889999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 010063          436 RLLRICLDIMTK  447 (519)
Q Consensus       436 ~~~~~al~~~~~  447 (519)
                      ..+++++.+...
T Consensus       314 ~~l~~al~~~~~  325 (373)
T 1hz4_A          314 RVLLDALKLANR  325 (373)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc
Confidence            999999998765

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.3e-21  Score=174.79  Aligned_cols=253  Identities=14%  Similarity=0.087  Sum_probs=214.3

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcC
Q 010063          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK  196 (519)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  196 (519)
                      ....+...|..+...|++++|+.+++++++.          . ..+.++..+|.++...|++++|+..+++++.......
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~----------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~   72 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWEL----------H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR   72 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc
Confidence            3455888999999999999999999999987          3 4467899999999999999999999999999886655


Q ss_pred             CCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010063          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (519)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (519)
                      ++.+....++..+|.++...|++++|+.++++++.+.     ++           +.++...|++++|+..+++++..  
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~-----------~~~~~~~~~~~~a~~~~~~~~~~--  134 (258)
T 3uq3_A           73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-----RT-----------ADILTKLRNAEKELKKAEAEAYV--  134 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CC-----------HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-----ch-----------hHHHHHHhHHHHHHHHHHHHHHc--
Confidence            5666667889999999999999999999999999862     11           45677788999999999999874  


Q ss_pred             HhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010063          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  356 (519)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  356 (519)
                            .|....++..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|+.++++++
T Consensus       135 ------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  200 (258)
T 3uq3_A          135 ------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAI  200 (258)
T ss_dssp             ------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                  6777899999999999999999999999999986        34455789999999999999999999999999


Q ss_pred             HHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 010063          357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS  424 (519)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  424 (519)
                      +.       .++.   ..++..+|.++...|++++|...+++++++..+..  ..|....++..++.+
T Consensus       201 ~~-------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          201 EK-------DPNF---VRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKA  256 (258)
T ss_dssp             HH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHT
T ss_pred             Hh-------CHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc--CCCchHHHHHHHHHh
Confidence            87       2333   45678999999999999999999999999876653  345555555555543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.3e-21  Score=174.68  Aligned_cols=254  Identities=11%  Similarity=0.015  Sum_probs=212.5

Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcC
Q 010063          159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG  238 (519)
Q Consensus       159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  238 (519)
                      +..+..+..+|.++...|++++|+..+++++...     ..   ..++..+|.++...|++++|+..+++++++.... .
T Consensus         2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-----~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~   72 (258)
T 3uq3_A            2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-----KD---ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-R   72 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----CC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-----cc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-c
Confidence            3567889999999999999999999999998874     22   2358899999999999999999999999987653 2


Q ss_pred             CCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 010063          239 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT  318 (519)
Q Consensus       239 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  318 (519)
                      ++.+....++..+|.++...|++++|+.++++++++.        +.        +.++...|++++|+..+++++.   
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~--------~~~~~~~~~~~~a~~~~~~~~~---  133 (258)
T 3uq3_A           73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--------RT--------ADILTKLRNAEKELKKAEAEAY---  133 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CC--------HHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------ch--------hHHHHHHhHHHHHHHHHHHHHH---
Confidence            3445557899999999999999999999999999862        21        4567778889999999999987   


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010063          319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  398 (519)
Q Consensus       319 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  398 (519)
                           ..|....++..+|.++...|++++|+.++++++..       .+..   ..++..+|.++...|++++|+..+++
T Consensus       134 -----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~  198 (258)
T 3uq3_A          134 -----VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-------APED---ARGYSNRAAALAKLMSFPEAIADCNK  198 (258)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -----cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------Cccc---HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence                 46778889999999999999999999999999987       2333   35678999999999999999999999


Q ss_pred             HHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHH
Q 010063          399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI  465 (519)
Q Consensus       399 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  465 (519)
                      ++..        .|....++..+|.++...|++++|..++++++++..+..  ..|....++..++.
T Consensus       199 al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~p~~~~~~~~l~~  255 (258)
T 3uq3_A          199 AIEK--------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYK  255 (258)
T ss_dssp             HHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHH
T ss_pred             HHHh--------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc--CCCchHHHHHHHHH
Confidence            9885        344567889999999999999999999999999876542  33555555555554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.91  E-value=8.4e-23  Score=184.15  Aligned_cols=261  Identities=12%  Similarity=0.032  Sum_probs=209.1

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCC
Q 010063          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS  241 (519)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  241 (519)
                      +..+...|.++...|++++|+..++++++..    +..   ..++..+|.++...|++++|+..+++++..     ..+.
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~----p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~   70 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK----YNS---PYIYNRRAVCYYELAKYDLAQKDIETYFSK-----VNAT   70 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT----CCC---STTHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SCTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----cCch
Confidence            3467889999999999999999999998764    222   235889999999999999999999999872     1222


Q ss_pred             HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (519)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (519)
                      .....++..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+.+++++++.     
T Consensus        71 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----  137 (272)
T 3u4t_A           71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-----  137 (272)
T ss_dssp             TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----
T ss_pred             hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----
Confidence            334677899999999999999999999999987        4556789999999999999999999999999874     


Q ss_pred             CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCC---hHHHHHHHHH
Q 010063          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR---GQEGRELLEE  398 (519)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~  398 (519)
                         .|....++.++|......+++++|+..++++++.       .++.   ...+..+|.++...|+   +++|+..+++
T Consensus       138 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~p~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  204 (272)
T 3u4t_A          138 ---TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL-------KPNI---YIGYLWRARANAAQDPDTKQGLAKPYYEK  204 (272)
T ss_dssp             ---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTC---HHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred             ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------Cccc---hHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence               4566678899995555567999999999999987       2333   3566889999999999   9999999999


Q ss_pred             HHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH
Q 010063          399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY  468 (519)
Q Consensus       399 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  468 (519)
                      ++++......+.......++..+|.+|...|++++|+.++++++++        +|....+...++.+..
T Consensus       205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~  266 (272)
T 3u4t_A          205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--------DPTNKKAIDGLKMKLE  266 (272)
T ss_dssp             HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHC----
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CccHHHHHHHhhhhhc
Confidence            9998865432212335678999999999999999999999999985        2444445555555443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.90  E-value=2.2e-22  Score=188.12  Aligned_cols=255  Identities=11%  Similarity=-0.023  Sum_probs=215.9

Q ss_pred             ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHh
Q 010063          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN-YEKSMLVYQRVINVLESR  236 (519)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~  236 (519)
                      .|....++..+|.++...|++++|+..+++++.+.       |....+++.+|.++...|+ +++|+..|++++.+    
T Consensus        93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l----  161 (382)
T 2h6f_A           93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----  161 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----
T ss_pred             ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH----
Confidence            78889999999999999999999999999999875       5556679999999999997 99999999999987    


Q ss_pred             cCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063          237 YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (519)
Q Consensus       237 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (519)
                          +|....+++++|.++...|++++|+..|++++++        .|....++.++|.++...|++++|+.++++++++
T Consensus       162 ----~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l  229 (382)
T 2h6f_A          162 ----QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE  229 (382)
T ss_dssp             ----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence                2444778999999999999999999999999998        6777899999999999999999999999999996


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHH-----HHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcC--C
Q 010063          317 YTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEA-----VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG--R  388 (519)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~  388 (519)
                              +|....+++++|.++.. .|.+++|     +.++++++.+       .|++   ..++.+++.++...|  +
T Consensus       230 --------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l-------~P~~---~~a~~~l~~ll~~~g~~~  291 (382)
T 2h6f_A          230 --------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL-------VPHN---ESAWNYLKGILQDRGLSK  291 (382)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH-------STTC---HHHHHHHHHHHTTTCGGG
T ss_pred             --------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-------CCCC---HHHHHHHHHHHHccCccc
Confidence                    56777899999999999 5665888     5889999987       3444   457789999999988  6


Q ss_pred             hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcc--------C-HHHHHHHHHHH-HHHHHHhcCCCCcchhH
Q 010063          389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK--------N-FVEAERLLRIC-LDIMTKTVGPDDQSISF  458 (519)
Q Consensus       389 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~~~~~~~~~~~~~~  458 (519)
                      +++|++.++++ +        ..|....++..+|.+|..+|        + +++|+.+|+++ ++        .+|....
T Consensus       292 ~~~a~~~~~~~-~--------~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--------~DP~r~~  354 (382)
T 2h6f_A          292 YPNLLNQLLDL-Q--------PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--------KDTIRKE  354 (382)
T ss_dssp             CHHHHHHHHHH-T--------TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--------TCGGGHH
T ss_pred             hHHHHHHHHHh-c--------cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--------hCchhHH
Confidence            88998877664 2        34555678889999999875        2 58888888887 55        3577777


Q ss_pred             HHHHHHHHHHhc
Q 010063          459 PMLHLGITLYHL  470 (519)
Q Consensus       459 ~~~~la~~~~~~  470 (519)
                      .|..++..+..+
T Consensus       355 ~w~~~~~~l~~~  366 (382)
T 2h6f_A          355 YWRYIGRSLQSK  366 (382)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            787777766654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.90  E-value=4.5e-22  Score=185.97  Aligned_cols=256  Identities=9%  Similarity=-0.034  Sum_probs=211.4

Q ss_pred             CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHH
Q 010063          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR-AKKAVEIYHRVITILE  276 (519)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~  276 (519)
                      ..|....++..+|.++...|++++|+..+++++.+        +|....++.++|.++...|+ +++|+..+++++++  
T Consensus        92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--  161 (382)
T 2h6f_A           92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--  161 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred             CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--
Confidence            34778888999999999999999999999999986        34457889999999999997 99999999999997  


Q ss_pred             HhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010063          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  356 (519)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  356 (519)
                            .|....+++++|.++...|++++|+..|++++++        +|....++.++|.++...|++++|+.++++++
T Consensus       162 ------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al  227 (382)
T 2h6f_A          162 ------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL  227 (382)
T ss_dssp             ------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred             ------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence                  6777899999999999999999999999999996        56777899999999999999999999999999


Q ss_pred             HHHHhhccCCCCchHHHHHHHHHHHHHHH-cCChHHH-----HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcc-
Q 010063          357 RVIKDSNYMSLDDSIMENMRIDLAELLHI-VGRGQEG-----RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK-  429 (519)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-  429 (519)
                      ++       .++.   ..+++++|.++.. .|..++|     +.++++++.+        .|....++.++|.++...| 
T Consensus       228 ~l-------~P~~---~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~  289 (382)
T 2h6f_A          228 KE-------DVRN---NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGL  289 (382)
T ss_dssp             HH-------CTTC---HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCG
T ss_pred             Hh-------CCCC---HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCc
Confidence            98       3333   4577999999999 5665888     5889998885        4555678999999999988 


Q ss_pred             -CHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcC--------C-hHHHHHHHHHH-HHHHHHhcCCCCCcc
Q 010063          430 -NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN--------R-DKEAEKLVLEA-LYIREIAFGKDSLPV  498 (519)
Q Consensus       430 -~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-~~~~~~~~~~~~~~~  498 (519)
                       ++++|++.++++ +        ..|....++..+|.+|..+|        + +++|+.+|+++ +++          ++
T Consensus       290 ~~~~~a~~~~~~~-~--------~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~----------DP  350 (382)
T 2h6f_A          290 SKYPNLLNQLLDL-Q--------PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK----------DT  350 (382)
T ss_dssp             GGCHHHHHHHHHH-T--------TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT----------CG
T ss_pred             cchHHHHHHHHHh-c--------cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh----------Cc
Confidence             689998877664 2        34666778899999999985        2 47777777776 442          22


Q ss_pred             hhhHHHHHHHHHHHHh
Q 010063          499 GKLFCFVLFGLVWFCL  514 (519)
Q Consensus       499 ~~~~~~~~l~~~~~~l  514 (519)
                      .....|..++..+..+
T Consensus       351 ~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          351 IRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             GGHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHH
Confidence            2235577777776543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.90  E-value=1.4e-20  Score=184.60  Aligned_cols=299  Identities=14%  Similarity=0.068  Sum_probs=243.0

Q ss_pred             HHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh----cCChHHHHHHHHHHHhh
Q 010063          120 ELFNEVKSMIM----MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY----IGDLKFVQSLLDMMSGI  191 (519)
Q Consensus       120 ~l~~~~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~  191 (519)
                      ..+..+..+..    .+++++|+.+|+++.+.            ..+.++..+|.+|..    .+++++|+.+|+++...
T Consensus        77 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~  144 (490)
T 2xm6_A           77 AEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK------------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ  144 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            46677888888    89999999999998763            245678899999998    89999999999998653


Q ss_pred             hhhcCCCchHHHHHHHHHHHHHHc----cccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh----cCCHHH
Q 010063          192 VDSLKDDEPLLDAILLHMGSMYST----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKK  263 (519)
Q Consensus       192 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~  263 (519)
                      .         ...+++.+|.+|..    .+++++|+.+|+++.+.       .+   ..++..+|.+|..    .+++++
T Consensus       145 ~---------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~  205 (490)
T 2xm6_A          145 G---------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-------GN---VWSCNQLGYMYSRGLGVERNDAI  205 (490)
T ss_dssp             T---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             C---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHhcCCCCCcCHHH
Confidence            1         13458899999987    88999999999998763       12   5678899999998    899999


Q ss_pred             HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 010063          264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK  339 (519)
Q Consensus       264 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  339 (519)
                      |+.+|+++.+.       .   ...++..+|.+|..    .+++++|+.+|+++.+.          ....++.++|.+|
T Consensus       206 A~~~~~~a~~~-------~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~y  265 (490)
T 2xm6_A          206 SAQWYRKSATS-------G---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ----------GNSIAQFRLGYIL  265 (490)
T ss_dssp             HHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT----------TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHH
Confidence            99999999763       1   25678899999997    89999999999998763          2234778899999


Q ss_pred             HH----CCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHHHHhhCCC
Q 010063          340 CA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV-----GRGQEGRELLEECLLITEKYKGKE  410 (519)
Q Consensus       340 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~  410 (519)
                      ..    .+++++|+.+|+++.+.         .+   ..++..+|.+|...     +++++|+.+|+++.+.       .
T Consensus       266 ~~g~~~~~d~~~A~~~~~~a~~~---------~~---~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-------~  326 (490)
T 2xm6_A          266 EQGLAGAKEPLKALEWYRKSAEQ---------GN---SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-------G  326 (490)
T ss_dssp             HHTTTSSCCHHHHHHHHHHHHTT---------TC---HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-------T
T ss_pred             HCCCCCCCCHHHHHHHHHHHHHc---------CC---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-------C
Confidence            98    89999999999998753         12   23568899999988     8999999999998763       2


Q ss_pred             ChhHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh----cCChHHHHHHHHHH
Q 010063          411 HPSFVTHLLNLAASYSRSK---NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEA  483 (519)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a  483 (519)
                      +   ..++.++|.+|...|   ++++|+.+|+++.+.          ....++.++|.+|..    .+++++|..+|+++
T Consensus       327 ~---~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A  393 (490)
T 2xm6_A          327 D---ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA  393 (490)
T ss_dssp             C---HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             C---HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            2   357888999998866   889999999999872          234678899999999    89999999999999


Q ss_pred             HHHHHHhcCCCCCcchhhHHHHHHHHHHHH
Q 010063          484 LYIREIAFGKDSLPVGKLFCFVLFGLVWFC  513 (519)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  513 (519)
                      .+.       .+     ..++++||.+|..
T Consensus       394 ~~~-------~~-----~~a~~~Lg~~y~~  411 (490)
T 2xm6_A          394 AEQ-------GL-----SAAQVQLGEIYYY  411 (490)
T ss_dssp             HHT-------TC-----HHHHHHHHHHHHH
T ss_pred             HhC-------CC-----HHHHHHHHHHHHc
Confidence            862       22     2458899999987

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.90  E-value=2.4e-22  Score=181.15  Aligned_cols=243  Identities=13%  Similarity=0.103  Sum_probs=204.6

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCc
Q 010063          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (519)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (519)
                      .++..|..++..|++++|+..++++++.          .|..+.++..+|.++...|++++|+..+++++..    +++.
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~----------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~   70 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAK----------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK----VNAT   70 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHT----------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT----SCTT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHh----------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----cCch
Confidence            3678899999999999999999999987          5555668999999999999999999999999873    2333


Q ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (519)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (519)
                      .....++..+|.++...|++++|+.+++++++..        |....++..+|.++...|++++|+.+++++++.     
T Consensus        71 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----  137 (272)
T 3u4t_A           71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-----  137 (272)
T ss_dssp             TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----
T ss_pred             hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----
Confidence            3346678999999999999999999999999862        223567889999999999999999999999875     


Q ss_pred             CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC---HHHHHHHHHHHH
Q 010063          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN---AEEAVELYKKAL  356 (519)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al  356 (519)
                         .|....++..+|......+++++|+..+++++++        .|....++..+|.++...|+   +++|+..+++++
T Consensus       138 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  206 (272)
T 3u4t_A          138 ---TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI  206 (272)
T ss_dssp             ---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred             ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence               5666789999994455566999999999999986        34446788899999999999   999999999999


Q ss_pred             HHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063          357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (519)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (519)
                      +......  .++......++..+|.+|...|++++|+.++++++++
T Consensus       207 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  250 (272)
T 3u4t_A          207 EVCAPGG--AKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL  250 (272)
T ss_dssp             HHHGGGG--GGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhccc--ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            9976531  1113445678899999999999999999999999986

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.90  E-value=1.5e-20  Score=184.42  Aligned_cols=299  Identities=13%  Similarity=0.069  Sum_probs=246.5

Q ss_pred             HHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh----cCChHHHHHHHHHHHhh
Q 010063          120 ELFNEVKSMIM----MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY----IGDLKFVQSLLDMMSGI  191 (519)
Q Consensus       120 ~l~~~~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~  191 (519)
                      ..+..+..+..    .+++++|+.+|+++.+.            ..+.+++.+|.+|..    .+++++|+.+|+++...
T Consensus        41 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~  108 (490)
T 2xm6_A           41 AQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ------------GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK  108 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            35667777777    89999999999999763            235688999999999    99999999999998753


Q ss_pred             hhhcCCCchHHHHHHHHHHHHHHc----cccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh----cCCHHH
Q 010063          192 VDSLKDDEPLLDAILLHMGSMYST----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKK  263 (519)
Q Consensus       192 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~  263 (519)
                      .      +   ..+++.+|.+|..    .+++++|+.+|+++.+.       ++   ..++..+|.+|..    .+++++
T Consensus       109 ~------~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~d~~~  169 (490)
T 2xm6_A          109 G------L---PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-------GR---DSGQQSMGDAYFEGDGVTRDYVM  169 (490)
T ss_dssp             T------C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             C------C---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHHH
Confidence            1      1   3457889999998    88999999999998763       12   5678899999998    899999


Q ss_pred             HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 010063          264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK  339 (519)
Q Consensus       264 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  339 (519)
                      |+.+|+++.+.          ....++..+|.+|..    .+++++|+.+|+++.+.       .+   ..++..+|.+|
T Consensus       170 A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~y  229 (490)
T 2xm6_A          170 AREWYSKAAEQ----------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-------GD---ELGQLHLADMY  229 (490)
T ss_dssp             HHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHH
Confidence            99999999864          136788999999998    89999999999999873       22   35788999999


Q ss_pred             HH----CCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhhCCCC
Q 010063          340 CA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEH  411 (519)
Q Consensus       340 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~  411 (519)
                      ..    .+++++|+.+|+++.+.         .+   ..++..+|.+|..    .+++++|+.+|+++.+.       .+
T Consensus       230 ~~g~g~~~~~~~A~~~~~~a~~~---------~~---~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-------~~  290 (490)
T 2xm6_A          230 YFGIGVTQDYTQSRVLFSQSAEQ---------GN---SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-------GN  290 (490)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHTT---------TC---HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-------TC
T ss_pred             HcCCCCCCCHHHHHHHHHHHHHC---------CC---HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-------CC
Confidence            97    89999999999998764         12   2456889999998    89999999999998752       22


Q ss_pred             hhHHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcC---ChHHHHHHHHHH
Q 010063          412 PSFVTHLLNLAASYSRS-----KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN---RDKEAEKLVLEA  483 (519)
Q Consensus       412 ~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a  483 (519)
                         ..++..+|.+|...     +++++|+.+|+++.+.       .   ...++.++|.+|...|   ++++|+.+|+++
T Consensus       291 ---~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a  357 (490)
T 2xm6_A          291 ---SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-------G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKA  357 (490)
T ss_dssp             ---HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-------C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence               35788999999988     9999999999999872       2   2357899999999877   889999999999


Q ss_pred             HHHHHHhcCCCCCcchhhHHHHHHHHHHHH
Q 010063          484 LYIREIAFGKDSLPVGKLFCFVLFGLVWFC  513 (519)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  513 (519)
                      ++.       .+     ..++++||.+|..
T Consensus       358 ~~~-------~~-----~~a~~~Lg~~y~~  375 (490)
T 2xm6_A          358 AAK-------GE-----KAAQFNLGNALLQ  375 (490)
T ss_dssp             HHT-------TC-----HHHHHHHHHHHHH
T ss_pred             HHC-------CC-----HHHHHHHHHHHHc
Confidence            863       22     3558899999987

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.89  E-value=4.4e-22  Score=172.35  Aligned_cols=197  Identities=17%  Similarity=0.119  Sum_probs=162.1

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (519)
                      ..++..+|.++...|++++|+..|+++++.        .|....++.++|.++...|++++|+..+++++++        
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------   68 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--------   68 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence            457889999999999999999999999975        6777899999999999999999999999999986        


Q ss_pred             ChhHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHH
Q 010063          325 DGRVGMAMCSLAHAKCAN-----------GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGR  393 (519)
Q Consensus       325 ~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  393 (519)
                      .|....++.++|.++...           |++++|+..+++++++       .|+.   ..++.++|.++...|++++|+
T Consensus        69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------~P~~---~~~~~~lg~~~~~~g~~~~A~  138 (217)
T 2pl2_A           69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-------NPRY---APLHLQRGLVYALLGERDKAE  138 (217)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-------Cccc---HHHHHHHHHHHHHcCChHHHH
Confidence            466677899999999999           9999999999999998       3444   346689999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCCh
Q 010063          394 ELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD  473 (519)
Q Consensus       394 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  473 (519)
                      ..|++++++.         ....++.++|.++...|++++|+..|++++++        +|....++..+|.++...|++
T Consensus       139 ~~~~~al~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~  201 (217)
T 2pl2_A          139 ASLKQALALE---------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKA  201 (217)
T ss_dssp             HHHHHHHHHC---------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC----
T ss_pred             HHHHHHHhcc---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCH
Confidence            9999999862         23567889999999999999999999999984        466677889999999999999


Q ss_pred             HHHHHHHHHHH
Q 010063          474 KEAEKLVLEAL  484 (519)
Q Consensus       474 ~~A~~~~~~a~  484 (519)
                      ++|+..++++-
T Consensus       202 ~~A~~~~~~~~  212 (217)
T 2pl2_A          202 EEAARAAALEH  212 (217)
T ss_dssp             -----------
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.89  E-value=6.7e-22  Score=171.20  Aligned_cols=200  Identities=14%  Similarity=0.131  Sum_probs=161.0

Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcC
Q 010063          159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG  238 (519)
Q Consensus       159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  238 (519)
                      |..+.++..+|.++...|++++|+..+++++...       |....++..+|.++...|++++|+..+++++++.     
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----   69 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-------PQDPEALYWLARTQLKLGLVNPALENGKTLVART-----   69 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence            3445688999999999999999999999998764       4455679999999999999999999999999872     


Q ss_pred             CCCHHHHHHHHHHHHHHhhc-----------CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHH
Q 010063          239 KTSILLVTSLLGMAKVLGSI-----------GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE  307 (519)
Q Consensus       239 ~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  307 (519)
                         |....++..+|.++...           |++++|+..+++++++        .|....++.++|.++...|++++|+
T Consensus        70 ---P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~  138 (217)
T 2pl2_A           70 ---PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------NPRYAPLHLQRGLVYALLGERDKAE  138 (217)
T ss_dssp             ---TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ---CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHHHH
Confidence               44467889999999999           9999999999999997        5667889999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcC
Q 010063          308 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG  387 (519)
Q Consensus       308 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  387 (519)
                      ..|++++++       +  ....++.++|.++...|++++|+..|+++++.       .|+.   ..++.++|.++...|
T Consensus       139 ~~~~~al~~-------~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~P~~---~~~~~~la~~~~~~g  199 (217)
T 2pl2_A          139 ASLKQALAL-------E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ-------APKD---LDLRVRYASALLLKG  199 (217)
T ss_dssp             HHHHHHHHH-------C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------STTC---HHHHHHHHHHHTC--
T ss_pred             HHHHHHHhc-------c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC---hHHHHHHHHHHHHcc
Confidence            999999997       2  34557889999999999999999999999987       3444   346689999999999


Q ss_pred             ChHHHHHHHHHHH
Q 010063          388 RGQEGRELLEECL  400 (519)
Q Consensus       388 ~~~~A~~~~~~al  400 (519)
                      ++++|+..++++-
T Consensus       200 ~~~~A~~~~~~~~  212 (217)
T 2pl2_A          200 KAEEAARAAALEH  212 (217)
T ss_dssp             -------------
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998753

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.88  E-value=3.2e-20  Score=167.92  Aligned_cols=281  Identities=13%  Similarity=0.046  Sum_probs=212.0

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHH
Q 010063          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEE-VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL  202 (519)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  202 (519)
                      .++..+..|+|.+|+..+++....          .|+. ......++.+|...|++++|+..++.         .+.| .
T Consensus         5 ~~~~~~~~g~y~~ai~~~~~~~~~----------~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---------~~~~-~   64 (291)
T 3mkr_A            5 DVKNAFYIGSYQQCINEAQRVKPS----------SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---------SSAP-E   64 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCCC----------SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---------TSCH-H
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccC----------CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---------cCCh-h
Confidence            356678899999999988765332          4554 45778889999999999999875533         1223 4


Q ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (519)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (519)
                      ..++..++..+...|+.++|+..+++.+..      ..+|....++..+|.++...|++++|+..+++            
T Consensus        65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------------  126 (291)
T 3mkr_A           65 LQAVRMFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------------  126 (291)
T ss_dssp             HHHHHHHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------------
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------------
Confidence            566888999999999999999999987652      11244456788999999999999999999886            


Q ss_pred             ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (519)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (519)
                       |....++..+|.++..+|++++|+..++++++..     +++.. ......+..++...|++++|+..|+++++.    
T Consensus       127 -~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~~~-~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~----  195 (291)
T 3mkr_A          127 -GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD-----EDATL-TQLATAWVSLAAGGEKLQDAYYIFQEMADK----  195 (291)
T ss_dssp             -CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----
T ss_pred             -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----cCcHH-HHHHHHHHHHHhCchHHHHHHHHHHHHHHh----
Confidence             2345788899999999999999999999998862     22211 111111223444569999999999999987    


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHH-HHHHHHHH
Q 010063          363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE-AERLLRIC  441 (519)
Q Consensus       363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a  441 (519)
                         .|++   ..+++++|.++...|++++|+..+++++..        .|....++.++|.++...|++++ +..+++++
T Consensus       196 ---~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~  261 (291)
T 3mkr_A          196 ---CSPT---LLLLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQL  261 (291)
T ss_dssp             ---SCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             ---CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence               2333   446789999999999999999999999985        45566789999999999999976 57899999


Q ss_pred             HHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHH
Q 010063          442 LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL  479 (519)
Q Consensus       442 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  479 (519)
                      +++     .|++|....       ...+.+.++++..-
T Consensus       262 ~~~-----~P~~~~~~d-------~~~~~~~fd~~~~~  287 (291)
T 3mkr_A          262 KDA-----HRSHPFIKE-------YRAKENDFDRLVLQ  287 (291)
T ss_dssp             HHH-----CTTCHHHHH-------HHHHHHHHHHHHHH
T ss_pred             HHh-----CCCChHHHH-------HHHHHHHHHHHHHH
Confidence            884     466655443       33444455554443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.87  E-value=4.4e-20  Score=167.03  Aligned_cols=262  Identities=14%  Similarity=0.082  Sum_probs=205.7

Q ss_pred             HHHhcCChHHHHHHHHHHHhhhhhcCCCchHH-HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010063          171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL-DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLL  249 (519)
Q Consensus       171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  249 (519)
                      ..+..|+|..|+..+++...       ..|.. ......++.+|...|++++|+..++.          .+ +....++.
T Consensus         8 ~~~~~g~y~~ai~~~~~~~~-------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----------~~-~~~~~a~~   69 (291)
T 3mkr_A            8 NAFYIGSYQQCINEAQRVKP-------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----------SS-APELQAVR   69 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHSCC-------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----------TS-CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccc-------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----------cC-ChhHHHHH
Confidence            35678999999998876432       22443 34567789999999999999976543          12 33567888


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 010063          250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  329 (519)
Q Consensus       250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  329 (519)
                      .++..+...|++++|++.+++++..      ...|....++..+|.++...|++++|+..+++             |...
T Consensus        70 ~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------------~~~~  130 (291)
T 3mkr_A           70 MFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------------GDSL  130 (291)
T ss_dssp             HHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------------CCSH
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------------CCCH
Confidence            9999999999999999999998753      11466678899999999999999999999886             2334


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 010063          330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  409 (519)
Q Consensus       330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  409 (519)
                      .++..+|.++..+|++++|+..++++++.       .+++... .....+..++...|++++|+..|+++++.       
T Consensus       131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-------~p~~~~~-~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-------  195 (291)
T 3mkr_A          131 ECMAMTVQILLKLDRLDLARKELKKMQDQ-------DEDATLT-QLATAWVSLAAGGEKLQDAYYIFQEMADK-------  195 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHH-HHHHHHHHHHHCTTHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhh-------CcCcHHH-HHHHHHHHHHhCchHHHHHHHHHHHHHHh-------
Confidence            57888999999999999999999999887       3443221 11112223444568999999999999875       


Q ss_pred             CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHH-HHHHHHHHHHHHH
Q 010063          410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE-AEKLVLEALYIRE  488 (519)
Q Consensus       410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a~~~~~  488 (519)
                       .|....+++++|.++...|++++|+..+++++..        +|....++.++|.++...|+..+ +..++++++++. 
T Consensus       196 -~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-  265 (291)
T 3mkr_A          196 -CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-  265 (291)
T ss_dssp             -SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-
T ss_pred             -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-
Confidence             3445678999999999999999999999999984        46667788999999999999976 578999998764 


Q ss_pred             HhcCCCCCcc
Q 010063          489 IAFGKDSLPV  498 (519)
Q Consensus       489 ~~~~~~~~~~  498 (519)
                          |+||.+
T Consensus       266 ----P~~~~~  271 (291)
T 3mkr_A          266 ----RSHPFI  271 (291)
T ss_dssp             ----TTCHHH
T ss_pred             ----CCChHH
Confidence                667654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.86  E-value=2.5e-19  Score=161.38  Aligned_cols=224  Identities=15%  Similarity=0.180  Sum_probs=193.4

Q ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHH
Q 010063          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVITILEL  277 (519)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~  277 (519)
                      ...+++.+|.++...|++++|+.+|+++++.       ++   ..++..+|.+|..    .+++++|+.+|+++++.   
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---   71 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-------KE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL---   71 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC---
Confidence            3456889999999999999999999999871       22   4678899999999    99999999999999875   


Q ss_pred             hcCCCChhhHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHH
Q 010063          278 NRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAV  349 (519)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~  349 (519)
                          +   ...++.++|.+|..    .+++++|+.+++++++.       +   ...++.++|.+|..    .+++++|+
T Consensus        72 ----~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A~  134 (273)
T 1ouv_A           72 ----N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------K---YAEGCASLGGIYHDGKVVTRDFKKAV  134 (273)
T ss_dssp             ----T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ----C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------C---CccHHHHHHHHHHcCCCcccCHHHHH
Confidence                1   46788999999999    99999999999999874       1   34578999999999    99999999


Q ss_pred             HHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH
Q 010063          350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY  425 (519)
Q Consensus       350 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  425 (519)
                      .+++++++.       +  +   ..++.++|.++..    .+++++|+.+++++++.       .+   ..++..+|.+|
T Consensus       135 ~~~~~a~~~-------~--~---~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~~  192 (273)
T 1ouv_A          135 EYFTKACDL-------N--D---GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------KD---SPGCFNAGNMY  192 (273)
T ss_dssp             HHHHHHHHT-------T--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHH
T ss_pred             HHHHHHHhc-------C--c---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHH
Confidence            999999875       1  2   3456889999999    99999999999999864       12   36788999999


Q ss_pred             Hh----ccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh----cCChHHHHHHHHHHHHHH
Q 010063          426 SR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       426 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~  487 (519)
                      ..    .+++++|+.+|+++++.       . +  ..++..+|.+|..    .+++++|..+|+++++..
T Consensus       193 ~~g~~~~~~~~~A~~~~~~a~~~-------~-~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          193 HHGEGATKNFKEALARYSKACEL-------E-N--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHTCSSCCCHHHHHHHHHHHHHT-------T-C--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HcCCCCCccHHHHHHHHHHHHhC-------C-C--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            99    99999999999999983       1 2  4678999999999    999999999999998853

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.86  E-value=1.1e-19  Score=165.02  Aligned_cols=225  Identities=12%  Similarity=0.078  Sum_probs=173.7

Q ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (519)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (519)
                      +...|.+|...|++++|+..|++++.+....  .+.+..+.++.++|.+|...|++++|+.+|++++++.....  +...
T Consensus        40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~  115 (292)
T 1qqe_A           40 CVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--QFRR  115 (292)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC--CHHH
Confidence            3344667888999999999999999998764  24456688999999999999999999999999999987653  3344


Q ss_pred             hHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010063          286 LVLPLFSLGSLFIKE-GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  364 (519)
Q Consensus       286 ~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  364 (519)
                      .+.++.++|.+|... |++++|+.+|++++++.....  .......++.++|.++..+|++++|+.+|++++++...   
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---  190 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG---  190 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS---
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc---
Confidence            577899999999996 999999999999999987541  22234668999999999999999999999999987432   


Q ss_pred             CCCC-chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH--hccCHHHHHHHHHHH
Q 010063          365 MSLD-DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS--RSKNFVEAERLLRIC  441 (519)
Q Consensus       365 ~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~a  441 (519)
                       .+. .......+.++|.++...|++++|+..+++++.+.....   .......+..++..+.  ..+++++|+..|+++
T Consensus       191 -~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~  266 (292)
T 1qqe_A          191 -NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (292)
T ss_dssp             -CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             -CCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence             111 123345778999999999999999999999987654321   1112334556666665  567788888888766


Q ss_pred             HH
Q 010063          442 LD  443 (519)
Q Consensus       442 l~  443 (519)
                      +.
T Consensus       267 ~~  268 (292)
T 1qqe_A          267 MR  268 (292)
T ss_dssp             SC
T ss_pred             Cc
Confidence            54

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.85  E-value=1.4e-19  Score=164.42  Aligned_cols=234  Identities=13%  Similarity=0.041  Sum_probs=180.1

Q ss_pred             cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 010063          218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF  297 (519)
Q Consensus       218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  297 (519)
                      ++++|+..|+++                      |.+|...|++++|+..|++++++..+..  +.+..+.++.++|.+|
T Consensus        32 ~~~~A~~~~~~a----------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~   87 (292)
T 1qqe_A           32 KFEEAADLCVQA----------------------ATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCF   87 (292)
T ss_dssp             HHHHHHHHHHHH----------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH----------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHH
Confidence            588888888876                      4567789999999999999999987753  3455688999999999


Q ss_pred             HhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHH
Q 010063          298 IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR  376 (519)
Q Consensus       298 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  376 (519)
                      ...|++++|+.++++++++.....  +....+.++.++|.+|... |++++|+.+|++++++.+..    .+......++
T Consensus        88 ~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~----~~~~~~~~~~  161 (292)
T 1qqe_A           88 KSGGNSVNAVDSLENAIQIFTHRG--QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD----QSVALSNKCF  161 (292)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT----TCHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC----CChHHHHHHH
Confidence            999999999999999999987652  3334577899999999996 99999999999999998752    3344456778


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcch
Q 010063          377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI  456 (519)
Q Consensus       377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  456 (519)
                      .++|.++..+|++++|+.+|++++.+..... ........++.++|.++..+|++++|+.+|++++.+.....   ....
T Consensus       162 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~  237 (292)
T 1qqe_A          162 IKCADLKALDGQYIEASDIYSKLIKSSMGNR-LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRE  237 (292)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT-TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC-cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---CcHH
Confidence            9999999999999999999999998643210 00123455789999999999999999999999988543221   1112


Q ss_pred             hHHHHHHHHHHH--hcCChHHHHHHHHHHHH
Q 010063          457 SFPMLHLGITLY--HLNRDKEAEKLVLEALY  485 (519)
Q Consensus       457 ~~~~~~la~~~~--~~g~~~~A~~~~~~a~~  485 (519)
                      ...+..++..+.  ..+++++|+..|++++.
T Consensus       238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~  268 (292)
T 1qqe_A          238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (292)
T ss_dssp             HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence            234556666665  45667777777765543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.85  E-value=3.2e-19  Score=163.27  Aligned_cols=248  Identities=10%  Similarity=0.054  Sum_probs=197.2

Q ss_pred             ccccHHHHHHHHHHHHHHHHH-hc--CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 010063          215 TLENYEKSMLVYQRVINVLES-RY--GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLF  291 (519)
Q Consensus       215 ~~g~~~~A~~~~~~al~~~~~-~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  291 (519)
                      ..|++++|..+++++.+.... .+  +++.......+...|.+|...|++++|+..|.+++++..+..  +....+.++.
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~   80 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR--SLFHAAKAFE   80 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence            468899999999998876553 12  234445566777788999999999999999999999987764  3456678999


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchH
Q 010063          292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI  371 (519)
Q Consensus       292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  371 (519)
                      ++|.+|..+|++++|+.+|++++++.....  +....+.++.++|.+|.. |++++|+.+|++++++.+..    .+...
T Consensus        81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~----~~~~~  153 (307)
T 2ifu_A           81 QAGMMLKDLQRMPEAVQYIEKASVMYVENG--TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE----ERLRQ  153 (307)
T ss_dssp             HHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT----TCHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC----CChhH
Confidence            999999999999999999999999987642  233467889999999999 99999999999999998763    34455


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCC
Q 010063          372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP  451 (519)
Q Consensus       372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  451 (519)
                      ...++.++|.++..+|++++|+.+|++++.+..+..  ..+....++..+|.++..+|++++|+.+|++++ +....   
T Consensus       154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~---  227 (307)
T 2ifu_A          154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME--NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF---  227 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS---
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC---
Confidence            677889999999999999999999999999987652  234456688899999999999999999999998 53111   


Q ss_pred             CCcchhHHHHHHHHHHHhcCChHHHHH
Q 010063          452 DDQSISFPMLHLGITLYHLNRDKEAEK  478 (519)
Q Consensus       452 ~~~~~~~~~~~la~~~~~~g~~~~A~~  478 (519)
                      ........+..++..+ ..|+.+.+..
T Consensus       228 ~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          228 SGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             TTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            1122334456666665 5677665555

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.85  E-value=1.1e-19  Score=163.79  Aligned_cols=256  Identities=11%  Similarity=0.035  Sum_probs=198.8

Q ss_pred             HHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010063          171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG  250 (519)
Q Consensus       171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  250 (519)
                      .....|++++|+..+++++...   ..++|....++..+|.++...|++++|+..+++++...        |....++..
T Consensus        14 ~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~   82 (275)
T 1xnf_A           14 PLQPTLQQEVILARMEQILASR---ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--------PDMPEVFNY   82 (275)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CCCHHHHHH
T ss_pred             ccCccchHHHHHHHHHHHHhcc---cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--------CCcHHHHHH
Confidence            3445688999999999988763   23457788889999999999999999999999999862        223567889


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 010063          251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  330 (519)
Q Consensus       251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  330 (519)
                      +|.++...|++++|+.++++++++        .|....++..+|.++...|++++|+.++++++++.     ++++   .
T Consensus        83 la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~~---~  146 (275)
T 1xnf_A           83 LGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-----PNDP---F  146 (275)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH---H
T ss_pred             HHHHHHHccCHHHHHHHHHHHHhc--------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCh---H
Confidence            999999999999999999999987        45557889999999999999999999999999862     2222   2


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 010063          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  410 (519)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  410 (519)
                      ....++ +....|++++|+..+++++...       ++....    ..++.++...++.++|+..+++++......    
T Consensus       147 ~~~~~~-~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----  210 (275)
T 1xnf_A          147 RSLWLY-LAEQKLDEKQAKEVLKQHFEKS-------DKEQWG----WNIVEFYLGNISEQTLMERLKADATDNTSL----  210 (275)
T ss_dssp             HHHHHH-HHHHHHCHHHHHHHHHHHHHHS-------CCCSTH----HHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----
T ss_pred             HHHHHH-HHHHhcCHHHHHHHHHHHHhcC-------CcchHH----HHHHHHHHHhcCHHHHHHHHHHHhcccccc----
Confidence            222233 3466799999999999988762       222221    347788888999999999999887654332    


Q ss_pred             ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHH
Q 010063          411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV  480 (519)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  480 (519)
                      .+....++..+|.++...|++++|+.+|++++.+        .|...   ...+.++...|++++|++.+
T Consensus       211 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~---~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          211 AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--------NVHNF---VEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CCTTC---HHHHHHHHHHHHHHHC----
T ss_pred             cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CchhH---HHHHHHHHHHHHHHhhHHHH
Confidence            2344688999999999999999999999999873        23222   23367788889999998877

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.85  E-value=4.7e-19  Score=162.12  Aligned_cols=247  Identities=9%  Similarity=0.059  Sum_probs=194.3

Q ss_pred             hcCChHHHHHHHHHHHhhhhh--c--CCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010063          174 YIGDLKFVQSLLDMMSGIVDS--L--KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLL  249 (519)
Q Consensus       174 ~~g~~~~A~~~~~~~~~~~~~--~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  249 (519)
                      ..|++++|..+++++.+....  +  .++.......+...|.+|...|++++|+..|.+++.+....  .+....+.++.
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~   80 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFE   80 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence            457788888888887765542  1  23444555567777899999999999999999999998775  34456788999


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 010063          250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  329 (519)
Q Consensus       250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  329 (519)
                      ++|.+|...|++++|+.+|++++++.....  +....+.++.++|.+|.. |++++|+.+|++++++.....  +.....
T Consensus        81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~--~~~~~~  155 (307)
T 2ifu_A           81 QAGMMLKDLQRMPEAVQYIEKASVMYVENG--TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE--RLRQAA  155 (307)
T ss_dssp             HHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC--ChhHHH
Confidence            999999999999999999999999987643  334567899999999999 999999999999999987641  223457


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 010063          330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  409 (519)
Q Consensus       330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  409 (519)
                      .++.++|.++..+|++++|+.+|++++.+..+.    .........+.++|.++...|++++|+.+|++++ +....   
T Consensus       156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~---  227 (307)
T 2ifu_A          156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM----ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF---  227 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS---
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc----CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC---
Confidence            789999999999999999999999999998763    2344555678899999999999999999999998 53221   


Q ss_pred             CChhHHHHHHHHHHHHHhccCHHHHHH
Q 010063          410 EHPSFVTHLLNLAASYSRSKNFVEAER  436 (519)
Q Consensus       410 ~~~~~~~~~~~la~~~~~~g~~~~A~~  436 (519)
                      ........+..++..+ ..|+.+.+..
T Consensus       228 ~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          228 SGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             TTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            1223344566666666 5677655544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.85  E-value=6e-19  Score=158.87  Aligned_cols=225  Identities=15%  Similarity=0.159  Sum_probs=193.1

Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHc----cccHHHHHHHHHHHHHHHH
Q 010063          159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYST----LENYEKSMLVYQRVINVLE  234 (519)
Q Consensus       159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~  234 (519)
                      +..+.+++.+|.++...|++++|+.+|+++.+.      .+   ..+++.+|.++..    .+++++|+.+|+++++.  
T Consensus         3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--   71 (273)
T 1ouv_A            3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL------KE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--   71 (273)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC------CC---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--
Confidence            455778999999999999999999999998862      12   2468899999999    99999999999999875  


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh----CCCHHHH
Q 010063          235 SRYGKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK----EGKAVDA  306 (519)
Q Consensus       235 ~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A  306 (519)
                           +   ...++..+|.+|..    .+++++|+.+|+++++.       +   ...++.++|.+|..    .+++++|
T Consensus        72 -----~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A  133 (273)
T 1ouv_A           72 -----N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------K---YAEGCASLGGIYHDGKVVTRDFKKA  133 (273)
T ss_dssp             -----T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             -----C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------C---CccHHHHHHHHHHcCCCcccCHHHH
Confidence                 1   25678899999999    99999999999999874       1   36789999999999    9999999


Q ss_pred             HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 010063          307 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL  382 (519)
Q Consensus       307 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~  382 (519)
                      +.+++++++.       +   ...++.++|.++..    .+++++|+.+++++++.       +  +   ..++.++|.+
T Consensus       134 ~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~--~---~~a~~~lg~~  191 (273)
T 1ouv_A          134 VEYFTKACDL-------N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------K--D---SPGCFNAGNM  191 (273)
T ss_dssp             HHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T--C---HHHHHHHHHH
T ss_pred             HHHHHHHHhc-------C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C--C---HHHHHHHHHH
Confidence            9999999974       2   23578899999999    99999999999999875       1  2   3466899999


Q ss_pred             HHH----cCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHH
Q 010063          383 LHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR----SKNFVEAERLLRICLDI  444 (519)
Q Consensus       383 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  444 (519)
                      |..    .+++++|+.+++++++.       .+   ..++..+|.+|..    .+++++|+.+|+++++.
T Consensus       192 ~~~g~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          192 YHHGEGATKNFKEALARYSKACEL-------EN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             HHHTCSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             HHcCCCCCccHHHHHHHHHHHHhC-------CC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence            999    99999999999999874       12   4678899999999    99999999999999984

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.83  E-value=5.9e-19  Score=159.06  Aligned_cols=233  Identities=15%  Similarity=0.062  Sum_probs=186.8

Q ss_pred             HHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 010063          210 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP  289 (519)
Q Consensus       210 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  289 (519)
                      +......|++++|+..++++++..    ..++|....++..+|.++...|++++|+..++++++.        .|....+
T Consensus        12 ~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~   79 (275)
T 1xnf_A           12 AVPLQPTLQQEVILARMEQILASR----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEV   79 (275)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTSS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHH
T ss_pred             eeccCccchHHHHHHHHHHHHhcc----cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHH
Confidence            334556799999999999988752    1234677889999999999999999999999999987        4556788


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCc
Q 010063          290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD  369 (519)
Q Consensus       290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  369 (519)
                      +..+|.++...|++++|+.++++++++        .|....++..+|.++...|++++|+.+++++++.       .++.
T Consensus        80 ~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-------~~~~  144 (275)
T 1xnf_A           80 FNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-------DPND  144 (275)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhc--------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-------CCCC
Confidence            999999999999999999999999986        3444568899999999999999999999999987       3444


Q ss_pred             hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhc
Q 010063          370 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV  449 (519)
Q Consensus       370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  449 (519)
                      +...   . ...+....|++++|+..+++++...     +..+.    ...++.++...++.++|+..+++++...... 
T Consensus       145 ~~~~---~-~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~----~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-  210 (275)
T 1xnf_A          145 PFRS---L-WLYLAEQKLDEKQAKEVLKQHFEKS-----DKEQW----GWNIVEFYLGNISEQTLMERLKADATDNTSL-  210 (275)
T ss_dssp             HHHH---H-HHHHHHHHHCHHHHHHHHHHHHHHS-----CCCST----HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH-
T ss_pred             hHHH---H-HHHHHHHhcCHHHHHHHHHHHHhcC-----CcchH----HHHHHHHHHHhcCHHHHHHHHHHHhcccccc-
Confidence            3221   2 2234467799999999999988753     12221    2347788889999999999999887643321 


Q ss_pred             CCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063          450 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (519)
Q Consensus       450 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (519)
                         .+....++..+|.+|...|++++|..+|++++++
T Consensus       211 ---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  244 (275)
T 1xnf_A          211 ---AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  244 (275)
T ss_dssp             ---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             ---cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence               2344678899999999999999999999999874

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.83  E-value=2.3e-19  Score=174.28  Aligned_cols=205  Identities=13%  Similarity=0.102  Sum_probs=175.5

Q ss_pred             CCchHHHHHHHHHHHHHHccccH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010063          197 DDEPLLDAILLHMGSMYSTLENY-EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (519)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (519)
                      ...+..+.+++.+|.++...|++ ++|+.+|++++++.        |....++..+|.+|...|++++|+.+|++++++ 
T Consensus        96 ~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-  166 (474)
T 4abn_A           96 GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--------PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH-  166 (474)
T ss_dssp             TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-
T ss_pred             ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence            33455567799999999999999 99999999999862        334678999999999999999999999999986 


Q ss_pred             HHhcCCCChhhHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC----
Q 010063          276 ELNRGTESADLVLPLFSLGSLFIKE---------GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN----  342 (519)
Q Consensus       276 ~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----  342 (519)
                             .|. ..++.++|.++...         |++++|+..+++++++        .|....++.++|.++...    
T Consensus       167 -------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~  230 (474)
T 4abn_A          167 -------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--------DVLDGRSWYILGNAYLSLYFNT  230 (474)
T ss_dssp             -------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHT
T ss_pred             -------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHhh
Confidence                   344 58999999999999         9999999999999986        456667899999999999    


Q ss_pred             ----CCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHH
Q 010063          343 ----GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL  418 (519)
Q Consensus       343 ----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  418 (519)
                          |++++|+..|++++++.       +..+....++.++|.+|...|++++|+..|++++++        .|....++
T Consensus       231 ~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~a~  295 (474)
T 4abn_A          231 GQNPKISQQALSAYAQAEKVD-------RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--------DPAWPEPQ  295 (474)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHC-------GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHH
T ss_pred             ccccchHHHHHHHHHHHHHhC-------CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHH
Confidence                99999999999999982       211133567899999999999999999999999986        34556788


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHH
Q 010063          419 LNLAASYSRSKNFVEAERLLRIC  441 (519)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~a  441 (519)
                      ..++.++...|++++|+..+.+.
T Consensus       296 ~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          296 QREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999876543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.83  E-value=6e-19  Score=171.32  Aligned_cols=222  Identities=15%  Similarity=0.113  Sum_probs=184.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh
Q 010063          221 KSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA-KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK  299 (519)
Q Consensus       221 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  299 (519)
                      .....+++++...+.... ..+..+.++..+|.++...|++ ++|+.+|++++++        .|....++..+|.+|..
T Consensus        79 ~~~~~~~~al~~l~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~  149 (474)
T 4abn_A           79 DVQEEMEKTLQQMEEVLG-SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWK  149 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHH
Confidence            334444455444443322 2345578899999999999999 9999999999987        56678899999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHhhccCCCCch
Q 010063          300 EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN---------GNAEEAVELYKKALRVIKDSNYMSLDDS  370 (519)
Q Consensus       300 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~  370 (519)
                      .|++++|+.+|++++++        .|. ..++.++|.++...         |++++|+..+++++++       .++. 
T Consensus       150 ~g~~~~A~~~~~~al~~--------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------~p~~-  212 (474)
T 4abn_A          150 KGDVTSAHTCFSGALTH--------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-------DVLD-  212 (474)
T ss_dssp             HTCHHHHHHHHHHHHTT--------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-------CTTC-
T ss_pred             cCCHHHHHHHHHHHHhh--------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-------CCCC-
Confidence            99999999999999985        344 47899999999999         9999999999999997       3333 


Q ss_pred             HHHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 010063          371 IMENMRIDLAELLHIV--------GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  442 (519)
Q Consensus       371 ~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (519)
                        ..++.++|.+|...        |++++|+..|++++.+..     ..+....++.++|.+|...|++++|+..|++++
T Consensus       213 --~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  285 (474)
T 4abn_A          213 --GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR-----KASSNPDLHLNRATLHKYEESYGEALEGFSQAA  285 (474)
T ss_dssp             --HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG-----GGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC-----CcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence              45678999999999        999999999999998621     112667899999999999999999999999999


Q ss_pred             HHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010063          443 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  483 (519)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (519)
                      .+        .|....++..++.++...|++++|+..+.+.
T Consensus       286 ~l--------~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          286 AL--------DPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HH--------CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             Hh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            85        3556678899999999999999999877554

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.83  E-value=3e-19  Score=157.79  Aligned_cols=218  Identities=15%  Similarity=0.205  Sum_probs=162.1

Q ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC
Q 010063          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT  281 (519)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  281 (519)
                      .+..++.+|..+...|++++|+.+++++++.        .|....++..+|.++...|++++|+..++++++.       
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------   86 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALEL-------   86 (243)
T ss_dssp             --------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------
Confidence            4456889999999999999999999999873        2333678889999999999999999999999987       


Q ss_pred             CChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063          282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (519)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (519)
                       .|....++..+|.++...|++++|+.+++++++..        |....++..+|.++...|++++|+.+++++++.   
T Consensus        87 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---  154 (243)
T 2q7f_A           87 -DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL---  154 (243)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---
T ss_pred             -CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---
Confidence             45567889999999999999999999999999862        334557889999999999999999999999987   


Q ss_pred             hccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010063          362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  441 (519)
Q Consensus       362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (519)
                          .++.   ..++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|..+++++
T Consensus       155 ----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  219 (243)
T 2q7f_A          155 ----NEND---TEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDKA  219 (243)
T ss_dssp             ----CTTC---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred             ----CCcc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence                2333   346688999999999999999999999875        2344568899999999999999999999999


Q ss_pred             HHHHHHhcCCCCcchhHHHHHHHHHHHh
Q 010063          442 LDIMTKTVGPDDQSISFPMLHLGITLYH  469 (519)
Q Consensus       442 l~~~~~~~~~~~~~~~~~~~~la~~~~~  469 (519)
                      +++        .|+...++..++.+...
T Consensus       220 ~~~--------~p~~~~~~~~~~~l~~~  239 (243)
T 2q7f_A          220 IDI--------QPDHMLALHAKKLLGHH  239 (243)
T ss_dssp             HHH--------CTTCHHHHHHHTC----
T ss_pred             Hcc--------CcchHHHHHHHHHHHhh
Confidence            984        23444455555544433

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.83  E-value=3e-19  Score=157.76  Aligned_cols=221  Identities=11%  Similarity=0.093  Sum_probs=161.1

Q ss_pred             ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (519)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (519)
                      ....+..+..+|..+...|++++|+..+++++...       |....++..+|.++...|++++|+..+++++...    
T Consensus        19 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----   87 (243)
T 2q7f_A           19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-------KEDAIPYINFANLLSSVNELERALAFYDKALELD----   87 (243)
T ss_dssp             -----------------------CCTTHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             chhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----
Confidence            33456778899999999999999999999988753       3335568899999999999999999999998862    


Q ss_pred             CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (519)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (519)
                          |....++..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+.+++++++. 
T Consensus        88 ----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-  154 (243)
T 2q7f_A           88 ----SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--------GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL-  154 (243)
T ss_dssp             ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-
T ss_pred             ----CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-
Confidence                233677889999999999999999999999987        3445678899999999999999999999999985 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010063          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  397 (519)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (519)
                             .|....++..+|.++...|++++|+.++++++..       .++.   ..++..+|.++...|++++|+.+++
T Consensus       155 -------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~---~~~~~~la~~~~~~~~~~~A~~~~~  217 (243)
T 2q7f_A          155 -------NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ-------DPGH---ADAFYNAGVTYAYKENREKALEMLD  217 (243)
T ss_dssp             -------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred             -------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------Cccc---HHHHHHHHHHHHHccCHHHHHHHHH
Confidence                   3444567899999999999999999999999887       2333   3467899999999999999999999


Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 010063          398 ECLLITEKYKGKEHPSFVTHLLNLAASYSR  427 (519)
Q Consensus       398 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~  427 (519)
                      +++++.        |....++..++.+...
T Consensus       218 ~~~~~~--------p~~~~~~~~~~~l~~~  239 (243)
T 2q7f_A          218 KAIDIQ--------PDHMLALHAKKLLGHH  239 (243)
T ss_dssp             HHHHHC--------TTCHHHHHHHTC----
T ss_pred             HHHccC--------cchHHHHHHHHHHHhh
Confidence            998852        3333455555544433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.82  E-value=5.5e-18  Score=150.56  Aligned_cols=203  Identities=11%  Similarity=0.042  Sum_probs=176.8

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcC
Q 010063          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK  196 (519)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  196 (519)
                      ....++..+..+...|++++|+..++++++.          .|....++..+|.++...|++++|+..+++++...    
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----  101 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEI----------DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD----  101 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----
Confidence            3556888999999999999999999999987          66668899999999999999999999999998774    


Q ss_pred             CCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010063          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (519)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (519)
                         |....++..+|.++...|++++|+.++++++.      .+..+....++..+|.++...|++++|+.+++++++.  
T Consensus       102 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--  170 (252)
T 2ho1_A          102 ---SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--  170 (252)
T ss_dssp             ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             ---cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence               22345688999999999999999999999876      1234566788999999999999999999999999986  


Q ss_pred             HhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010063          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  356 (519)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  356 (519)
                            .|....++..+|.++...|++++|+.+++++++.        .|....++..++.++...|++++|..++++++
T Consensus       171 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~  236 (252)
T 2ho1_A          171 ------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAASYGLQLK  236 (252)
T ss_dssp             ------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence                  3445778899999999999999999999998873        34445678889999999999999999999998


Q ss_pred             HH
Q 010063          357 RV  358 (519)
Q Consensus       357 ~~  358 (519)
                      +.
T Consensus       237 ~~  238 (252)
T 2ho1_A          237 RL  238 (252)
T ss_dssp             HH
T ss_pred             HH
Confidence            87

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.82  E-value=1.5e-18  Score=146.08  Aligned_cols=168  Identities=15%  Similarity=0.149  Sum_probs=148.6

Q ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 010063          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  365 (519)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  365 (519)
                      ...+|.++|.+|...|++++|+..|++++++        +|....++..+|.++...|++++|+..+.+++..       
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-------   68 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-------   68 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence            4678999999999999999999999999986        4666778999999999999999999999999887       


Q ss_pred             CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010063          366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (519)
Q Consensus       366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (519)
                      .++.   ..++..+|.++...++++.|...+.+++.+        .|....++..+|.+|...|++++|+..|++++++ 
T Consensus        69 ~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-  136 (184)
T 3vtx_A           69 DTTS---AEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI-  136 (184)
T ss_dssp             CCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             Cchh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-
Confidence            3333   345678999999999999999999999875        3445578889999999999999999999999985 


Q ss_pred             HHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          446 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       446 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                             +|....++.++|.+|..+|++++|+.+|++++++.
T Consensus       137 -------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  171 (184)
T 3vtx_A          137 -------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE  171 (184)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             -------cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence                   46667889999999999999999999999999864

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.82  E-value=3.2e-18  Score=152.15  Aligned_cols=204  Identities=12%  Similarity=0.053  Sum_probs=175.8

Q ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCC
Q 010063          244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  323 (519)
Q Consensus       244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  323 (519)
                      ...++..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+.+++++++.       
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-------  100 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEYRKALAS-------  100 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------
Confidence            4788999999999999999999999999987        3555788999999999999999999999999986       


Q ss_pred             CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010063          324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (519)
Q Consensus       324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (519)
                       .|....++..+|.++...|++++|+.++++++..        +..+....++..+|.++...|++++|+.++++++...
T Consensus       101 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  171 (252)
T 2ho1_A          101 -DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD--------TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN  171 (252)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTC--------TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             -CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhC--------ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence             3444568899999999999999999999998861        1233345677899999999999999999999998752


Q ss_pred             HHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010063          404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  483 (519)
Q Consensus       404 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (519)
                              |....++..+|.++...|++++|..++++++..        .|.....+..++.++...|++++|..+++++
T Consensus       172 --------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~  235 (252)
T 2ho1_A          172 --------RNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAASYGLQL  235 (252)
T ss_dssp             --------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence                    333567889999999999999999999998862        3455667889999999999999999999999


Q ss_pred             HHHH
Q 010063          484 LYIR  487 (519)
Q Consensus       484 ~~~~  487 (519)
                      ++..
T Consensus       236 ~~~~  239 (252)
T 2ho1_A          236 KRLY  239 (252)
T ss_dssp             HHHC
T ss_pred             HHHC
Confidence            8754

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.82  E-value=2.4e-18  Score=144.88  Aligned_cols=166  Identities=17%  Similarity=0.269  Sum_probs=148.1

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (519)
                      ..++.++|.+|...|++++|+..|++++++        +|....++..+|.+|...|++++|+..+.+++..        
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--------   68 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--------   68 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence            668899999999999999999999999987        5677889999999999999999999999999875        


Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010063          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (519)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (519)
                      .|....++..+|.++...+++++|...+.+++..       .++.   ..++..+|.++...|++++|+..|++++++  
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-------~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--  136 (184)
T 3vtx_A           69 DTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL-------NTVY---ADAYYKLGLVYDSMGEHDKAIEAYEKTISI--  136 (184)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------Cccc---hHHHHHHHHHHHHhCCchhHHHHHHHHHHh--
Confidence            3555667889999999999999999999999987       3333   345688999999999999999999999985  


Q ss_pred             HhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063          405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (519)
Q Consensus       405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (519)
                            +|....++.++|.+|..+|++++|+.+|++++++
T Consensus       137 ------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          137 ------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             ------cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence                  4556678999999999999999999999999984

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.82  E-value=7.1e-19  Score=177.22  Aligned_cols=175  Identities=21%  Similarity=0.275  Sum_probs=157.5

Q ss_pred             CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010063          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (519)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (519)
                      ..|..+.+++++|.++..+|++++|+..|++++++        +|....++.++|.+|..+|++++|+..|++++++   
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---   72 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---   72 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence            45888889999999999999999999999999987        2444778999999999999999999999999998   


Q ss_pred             hcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010063          278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  357 (519)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  357 (519)
                           .|....+++++|.++..+|++++|+..|++++++        +|....++.++|.+|..+|++++|+..|+++++
T Consensus        73 -----~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  139 (723)
T 4gyw_A           73 -----SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALK  139 (723)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                 5777899999999999999999999999999986        467778999999999999999999999999999


Q ss_pred             HHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 010063          358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  406 (519)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  406 (519)
                      +       .++.   ..++.++|.++...|++++|.+.+++++++....
T Consensus       140 l-------~P~~---~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          140 L-------KPDF---PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ  178 (723)
T ss_dssp             H-------CSCC---HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred             h-------CCCC---hHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence            8       3444   4567999999999999999999999999987654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.82  E-value=5.8e-19  Score=177.86  Aligned_cols=174  Identities=18%  Similarity=0.228  Sum_probs=158.3

Q ss_pred             CChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHh
Q 010063          157 KGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR  236 (519)
Q Consensus       157 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  236 (519)
                      ..|..+.+++++|.+|..+|++++|+..|++++++.       |....+++++|.+|..+|++++|+..|++++++    
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l----   72 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI----   72 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence            478899999999999999999999999999999885       455667999999999999999999999999987    


Q ss_pred             cCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063          237 YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (519)
Q Consensus       237 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (519)
                          +|....++.++|.++..+|++++|++.|++++++        .|....+++++|.+|..+|++++|+..|++++++
T Consensus        73 ----~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l  140 (723)
T 4gyw_A           73 ----SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL  140 (723)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                2445788999999999999999999999999998        5777899999999999999999999999999986


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063          317 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (519)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (519)
                              +|....++.++|.++...|++++|++.+++++++...
T Consensus       141 --------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          141 --------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             --------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             --------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence                    4666778999999999999999999999999998765

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.81  E-value=1.9e-17  Score=144.19  Aligned_cols=207  Identities=12%  Similarity=0.025  Sum_probs=175.1

Q ss_pred             chHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010063          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (519)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (519)
                      .|....++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+.+++++++.    
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----   71 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD--------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI----   71 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh----
Confidence            46667789999999999999999999999998862        223567889999999999999999999999987    


Q ss_pred             cCCCChhhHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010063          279 RGTESADLVLPLFSLGSLFIKE-GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  357 (519)
Q Consensus       279 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  357 (519)
                          .|....++..+|.++... |++++|+.+++++++      .+..|....++..+|.++...|++++|+.+++++++
T Consensus        72 ----~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  141 (225)
T 2vq2_A           72 ----KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA  141 (225)
T ss_dssp             ----CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ----CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                345577899999999999 999999999999987      134566778899999999999999999999999988


Q ss_pred             HHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHH
Q 010063          358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL  437 (519)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  437 (519)
                      .       .++.   ..++..+|.++...|++++|..++++++...     +  ......+..++.++...|++++|..+
T Consensus       142 ~-------~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~a~~~  204 (225)
T 2vq2_A          142 A-------QPQF---PPAFKELARTKMLAGQLGDADYYFKKYQSRV-----E--VLQADDLLLGWKIAKALGNAQAAYEY  204 (225)
T ss_dssp             H-------STTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----C--SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             h-------CCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C--CCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence            7       2333   3466889999999999999999999998864     1  02234567788899999999999999


Q ss_pred             HHHHHHH
Q 010063          438 LRICLDI  444 (519)
Q Consensus       438 ~~~al~~  444 (519)
                      ++.+...
T Consensus       205 ~~~~~~~  211 (225)
T 2vq2_A          205 EAQLQAN  211 (225)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988763

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.81  E-value=1.6e-17  Score=144.67  Aligned_cols=207  Identities=11%  Similarity=0.010  Sum_probs=174.9

Q ss_pred             CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (519)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (519)
                      .|....++..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|+.++++++..    
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----   71 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI----   71 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh----
Confidence            4566788999999999999999999999999986        4555788999999999999999999999999985    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010063          321 YGENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  399 (519)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  399 (519)
                          .|....++..+|.++... |++++|+.+++++++.        +..+....++..+|.++...|++++|+.+++++
T Consensus        72 ----~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  139 (225)
T 2vq2_A           72 ----KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD--------PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRS  139 (225)
T ss_dssp             ----CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS--------TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC--------cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                344456889999999999 9999999999999871        223333557789999999999999999999999


Q ss_pred             HHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHH
Q 010063          400 LLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL  479 (519)
Q Consensus       400 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  479 (519)
                      +...        |....++..+|.++...|++++|..++++++...     +  ......+..++.++...|+.++|..+
T Consensus       140 ~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~a~~~  204 (225)
T 2vq2_A          140 LAAQ--------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV-----E--VLQADDLLLGWKIAKALGNAQAAYEY  204 (225)
T ss_dssp             HHHS--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----C--SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhC--------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C--CCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence            8752        3345678899999999999999999999998853     2  03445567888899999999999999


Q ss_pred             HHHHHHH
Q 010063          480 VLEALYI  486 (519)
Q Consensus       480 ~~~a~~~  486 (519)
                      ++.+.+.
T Consensus       205 ~~~~~~~  211 (225)
T 2vq2_A          205 EAQLQAN  211 (225)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.81  E-value=5.5e-18  Score=151.42  Aligned_cols=210  Identities=12%  Similarity=0.090  Sum_probs=177.4

Q ss_pred             ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (519)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (519)
                      .+..+..++.+|..++..|++++|+..|++++...    ++++....+++.+|.++...|++++|+..|++++...    
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~----   82 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY----   82 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC----
Confidence            55667899999999999999999999999988764    4555667789999999999999999999999999873    


Q ss_pred             CCCCHHHHHHHHHHHHHHhh--------cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH--------------HHHHH
Q 010063          238 GKTSILLVTSLLGMAKVLGS--------IGRAKKAVEIYHRVITILELNRGTESADLVLPL--------------FSLGS  295 (519)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--------------~~la~  295 (519)
                       ++++....+++.+|.++..        .|++++|+..|+++++..     ++++....+.              ..+|.
T Consensus        83 -p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~la~  156 (261)
T 3qky_A           83 -QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIRELRAKLARKQYEAAR  156 (261)
T ss_dssp             -TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             4556778899999999999        999999999999999873     3344444444              88999


Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHHhhccC
Q 010063          296 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN----------GNAEEAVELYKKALRVIKDSNYM  365 (519)
Q Consensus       296 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~  365 (519)
                      +|...|++++|+..|+++++..     ++++....++..+|.+|...          |++++|+..++++++.       
T Consensus       157 ~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~-------  224 (261)
T 3qky_A          157 LYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI-------  224 (261)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH-------
Confidence            9999999999999999999863     34555778999999999977          9999999999999987       


Q ss_pred             CCCchHHHHHHHHHHHHHHHcCChHHHH
Q 010063          366 SLDDSIMENMRIDLAELLHIVGRGQEGR  393 (519)
Q Consensus       366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~  393 (519)
                      .|+++....+...++.++...++++++.
T Consensus       225 ~p~~~~~~~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          225 FPDSPLLRTAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             CTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence            5667777777788888888887776554

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.81  E-value=3.2e-18  Score=152.95  Aligned_cols=208  Identities=16%  Similarity=0.148  Sum_probs=175.5

Q ss_pred             HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC
Q 010063          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (519)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (519)
                      .....++.+|..+...|++++|+..|+++++.     .++++....++..+|.++...|++++|+..|+++++..     
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----   82 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY-----   82 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-----
Confidence            34678889999999999999999999999875     33455558899999999999999999999999999873     


Q ss_pred             CCChhHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHH--------------HHHH
Q 010063          323 ENDGRVGMAMCSLAHAKCA--------NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR--------------IDLA  380 (519)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~--------------~~la  380 (519)
                      ++++....++..+|.++..        .|++++|+..|+++++.       .|+++....+.              ..+|
T Consensus        83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-------~p~~~~~~~a~~~~~~~~~~~~~~~~~la  155 (261)
T 3qky_A           83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR-------YPNHELVDDATQKIRELRAKLARKQYEAA  155 (261)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-------CTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-------CcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566778899999999999        99999999999999987       34444444444              7899


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc----------cCHHHHHHHHHHHHHHHHHhcC
Q 010063          381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS----------KNFVEAERLLRICLDIMTKTVG  450 (519)
Q Consensus       381 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~  450 (519)
                      .+|...|++++|+..|++++...     ++++....++..+|.+|...          |++++|+..|++++..     .
T Consensus       156 ~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~-----~  225 (261)
T 3qky_A          156 RLYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI-----F  225 (261)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH-----C
T ss_pred             HHHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH-----C
Confidence            99999999999999999998853     34555778999999999977          9999999999999985     3


Q ss_pred             CCCcchhHHHHHHHHHHHhcCChHHHH
Q 010063          451 PDDQSISFPMLHLGITLYHLNRDKEAE  477 (519)
Q Consensus       451 ~~~~~~~~~~~~la~~~~~~g~~~~A~  477 (519)
                      |+++....+...++.++...++++++.
T Consensus       226 p~~~~~~~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          226 PDSPLLRTAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             TTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             CCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence            677777888888888888887776544

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.79  E-value=6e-18  Score=162.12  Aligned_cols=153  Identities=10%  Similarity=0.001  Sum_probs=144.9

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCh
Q 010063          333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP  412 (519)
Q Consensus       333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  412 (519)
                      ...+..+..+|++++|+.++++++++..+.  ++++++.++.++.+||.+|..+|+|++|+.++++++++.++.+|++||
T Consensus       313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~--lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp  390 (490)
T 3n71_A          313 LEKIDKARSEGLYHEVVKLCRECLEKQEPV--FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA  390 (490)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHTTT--BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence            344556778999999999999999998875  799999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          413 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                      .++.++++||.+|..+|++++|+.+|++|+++.+..+|++||.+......++.++..+|.+++|...|+++.+..
T Consensus       391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999997644

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.79  E-value=5.9e-19  Score=170.28  Aligned_cols=301  Identities=12%  Similarity=0.030  Sum_probs=168.9

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHhhhhhcCCCc
Q 010063          123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDL---KFVQSLLDMMSGIVDSLKDDE  199 (519)
Q Consensus       123 ~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~  199 (519)
                      ..+..+...|++++|+.+|+++.+.            ..+.+++.+|.+|...|++   ++|+.+|+++.+.        
T Consensus         8 ~la~~~~~~g~~~~A~~~~~~aa~~------------g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--------   67 (452)
T 3e4b_A            8 RLANEALKRGDTVTAQQNYQQLAEL------------GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--------   67 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH------------TCCTGGGTCC---------------------------------
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--------
Confidence            4567788899999999999998654            1245677889999888888   8999999887643        


Q ss_pred             hHHHHHHHHHHHHHHccc-----cHHHHHHHHHHHHHHHHHhcCCCC------------------------------HHH
Q 010063          200 PLLDAILLHMGSMYSTLE-----NYEKSMLVYQRVINVLESRYGKTS------------------------------ILL  244 (519)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~------------------------------~~~  244 (519)
                        ...+++.+|.++...|     ++++|+.+|+++++.     +...                              +..
T Consensus        68 --~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~-----g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~  140 (452)
T 3e4b_A           68 --SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN-----GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY  140 (452)
T ss_dssp             -----CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT-----TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC
T ss_pred             --CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC
Confidence              2235788888666655     888999999998762     1100                              001


Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHhc
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIYTKVY  321 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~  321 (519)
                      ..+++.+|.+|...+.++++........+.   .. ..++   .+++++|.+|...|   ++++|+.+|+++.+.     
T Consensus       141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~---a~-~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~-----  208 (452)
T 3e4b_A          141 PEAGLAQVLLYRTQGTYDQHLDDVERICKA---AL-NTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSR-----  208 (452)
T ss_dssp             TTHHHHHHHHHHHHTCGGGGHHHHHHHHHH---HT-TTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHcCCCcccCHHHHHHHHHH---HH-cCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC-----
Confidence            123344444444444433333332222111   11 1122   26667777777777   777777777777663     


Q ss_pred             CCCChhHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH-H--HHcCChHHHH
Q 010063          322 GENDGRVGMAMCSLAHAKCANG-----NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL-L--HIVGRGQEGR  393 (519)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~  393 (519)
                         .+..+..+.++|.+| ..|     ++++|+.+|+++.   ..       +   ..+++++|.+ +  ...+++++|+
T Consensus       209 ---g~~~a~~~~~Lg~~y-~~g~~~~~d~~~A~~~~~~aa---~g-------~---~~a~~~Lg~~~~~~~~~~d~~~A~  271 (452)
T 3e4b_A          209 ---GTVTAQRVDSVARVL-GDATLGTPDEKTAQALLEKIA---PG-------Y---PASWVSLAQLLYDFPELGDVEQMM  271 (452)
T ss_dssp             ---TCSCHHHHHHHHHHH-TCGGGSSCCHHHHHHHHHHHG---GG-------S---THHHHHHHHHHHHSGGGCCHHHHH
T ss_pred             ---CCHHHHHHHHHHHHH-hCCCCCCCCHHHHHHHHHHHc---CC-------C---HHHHHHHHHHHHhCCCCCCHHHHH
Confidence               233334456677766 344     5677777777664   11       1   2355677777 3  4567777777


Q ss_pred             HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH
Q 010063          394 ELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK-----NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY  468 (519)
Q Consensus       394 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  468 (519)
                      .+|+++.+.       .   ...+++++|.+|. .|     ++++|+.+|+++.           +....++++||.+|.
T Consensus       272 ~~~~~Aa~~-------g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----------~g~~~A~~~Lg~~y~  329 (452)
T 3e4b_A          272 KYLDNGRAA-------D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----------GREVAADYYLGQIYR  329 (452)
T ss_dssp             HHHHHHHHT-------T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----------TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHC-------C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----------CCCHHHHHHHHHHHH
Confidence            777777642       1   2456777777776 44     7777777777664           223456778887777


Q ss_pred             h----cCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHH
Q 010063          469 H----LNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFC  513 (519)
Q Consensus       469 ~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  513 (519)
                      .    ..++++|..+|+++.+       ..++     .++++||.+|..
T Consensus       330 ~G~g~~~d~~~A~~~~~~Aa~-------~g~~-----~A~~~Lg~~y~~  366 (452)
T 3e4b_A          330 RGYLGKVYPQKALDHLLTAAR-------NGQN-----SADFAIAQLFSQ  366 (452)
T ss_dssp             TTTTSSCCHHHHHHHHHHHHT-------TTCT-----THHHHHHHHHHS
T ss_pred             CCCCCCcCHHHHHHHHHHHHh-------hChH-----HHHHHHHHHHHh
Confidence            6    3478888888887765       2233     336788888753

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.79  E-value=8e-18  Score=161.24  Aligned_cols=153  Identities=10%  Similarity=0.046  Sum_probs=146.8

Q ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 010063          208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV  287 (519)
Q Consensus       208 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  287 (519)
                      ..+..+..+|+|++|+.++++++++.++.+|++||.++.++.++|.+|..+|+|++|+.++++++++.++..|+++|.++
T Consensus       314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a  393 (490)
T 3n71_A          314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG  393 (490)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            44556778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063          288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (519)
Q Consensus       288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (519)
                      .++++||.+|..+|++++|+.++++|+++.+..+|++||.+.....+++.++..++.+++|+..|.++.+...
T Consensus       394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~  466 (490)
T 3n71_A          394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL  466 (490)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999987654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.78  E-value=1.3e-16  Score=139.39  Aligned_cols=184  Identities=11%  Similarity=0.061  Sum_probs=153.3

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  325 (519)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  325 (519)
                      ..+..+|.++...|++++|+..|++++++.       ++....++.++|.++...|++++|+.+++++++.        .
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~   72 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLT-------NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--------N   72 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------T
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcc-------CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------C
Confidence            678899999999999999999999999872       2134567788999999999999999999999973        5


Q ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCch----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010063          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS----IMENMRIDLAELLHIVGRGQEGRELLEECLL  401 (519)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  401 (519)
                      |....++..+|.++...|++++|+..++++++..       |+++    ....++..+|.++...|++++|+..|+++++
T Consensus        73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  145 (228)
T 4i17_A           73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-------PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD  145 (228)
T ss_dssp             CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence            7788899999999999999999999999999873       3333    2345789999999999999999999999987


Q ss_pred             HHHHhhCCCChh--HHHHHHHHHHHHHhccCH---------------------------HHHHHHHHHHHHHHHHhcCCC
Q 010063          402 ITEKYKGKEHPS--FVTHLLNLAASYSRSKNF---------------------------VEAERLLRICLDIMTKTVGPD  452 (519)
Q Consensus       402 ~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~  452 (519)
                      +        .|.  ...++.++|.+|...|+.                           ++|+.++++++++     .|+
T Consensus       146 ~--------~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l-----~p~  212 (228)
T 4i17_A          146 V--------TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL-----SPN  212 (228)
T ss_dssp             S--------SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CTT
T ss_pred             c--------CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCC
Confidence            3        567  778999999999999988                           8888888888874     233


Q ss_pred             CcchhHHHHHHHHHH
Q 010063          453 DQSISFPMLHLGITL  467 (519)
Q Consensus       453 ~~~~~~~~~~la~~~  467 (519)
                         ...+...++.+.
T Consensus       213 ---~~~~~~~l~~i~  224 (228)
T 4i17_A          213 ---RTEIKQMQDQVK  224 (228)
T ss_dssp             ---CHHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHH
Confidence               344445555543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.76  E-value=9.1e-18  Score=161.98  Aligned_cols=220  Identities=13%  Similarity=0.089  Sum_probs=168.1

Q ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHhcCC
Q 010063          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG---RAKKAVEIYHRVITILELNRGT  281 (519)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~  281 (519)
                      +++.+|.+|...+.++++...........   . ..++.   +++.+|.+|...|   ++++|+.+|+++.+.       
T Consensus       143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a---~-~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~-------  208 (452)
T 3e4b_A          143 AGLAQVLLYRTQGTYDQHLDDVERICKAA---L-NTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSR-------  208 (452)
T ss_dssp             HHHHHHHHHHHHTCGGGGHHHHHHHHHHH---T-TTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-------
T ss_pred             HHHHHHHHHHcCCCcccCHHHHHHHHHHH---H-cCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC-------
Confidence            45666777776665555555433322221   1 12232   7889999999999   999999999999875       


Q ss_pred             CChhhHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-H--HHCCCHHHHHHHHH
Q 010063          282 ESADLVLPLFSLGSLFIKEG-----KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA-K--CANGNAEEAVELYK  353 (519)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~~  353 (519)
                       .+..+..++++|.+| ..|     ++++|+.+|+++.           +....++.++|.+ +  ...+++++|+.+|+
T Consensus       209 -g~~~a~~~~~Lg~~y-~~g~~~~~d~~~A~~~~~~aa-----------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~  275 (452)
T 3e4b_A          209 -GTVTAQRVDSVARVL-GDATLGTPDEKTAQALLEKIA-----------PGYPASWVSLAQLLYDFPELGDVEQMMKYLD  275 (452)
T ss_dssp             -TCSCHHHHHHHHHHH-TCGGGSSCCHHHHHHHHHHHG-----------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHH-hCCCCCCCCHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence             445566778999998 456     7899999999885           2344578899998 4  56899999999999


Q ss_pred             HHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh-
Q 010063          354 KALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG-----RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR-  427 (519)
Q Consensus       354 ~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-  427 (519)
                      ++.+.       +  +   ..+++++|.+|. .|     ++++|+.+|+++.           +....++++||.+|.. 
T Consensus       276 ~Aa~~-------g--~---~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----------~g~~~A~~~Lg~~y~~G  331 (452)
T 3e4b_A          276 NGRAA-------D--Q---PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----------GREVAADYYLGQIYRRG  331 (452)
T ss_dssp             HHHHT-------T--C---HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----------TTCHHHHHHHHHHHHTT
T ss_pred             HHHHC-------C--C---HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----------CCCHHHHHHHHHHHHCC
Confidence            98864       1  2   346689999998 56     9999999999875           2234688999999987 


Q ss_pred             ---ccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh----cCChHHHHHHHHHHHH
Q 010063          428 ---SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALY  485 (519)
Q Consensus       428 ---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~  485 (519)
                         ..++++|..+|+++.+       ..+   ..+.++||.+|..    ..++.+|..+|+++.+
T Consensus       332 ~g~~~d~~~A~~~~~~Aa~-------~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~  386 (452)
T 3e4b_A          332 YLGKVYPQKALDHLLTAAR-------NGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA  386 (452)
T ss_dssp             TTSSCCHHHHHHHHHHHHT-------TTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred             CCCCcCHHHHHHHHHHHHh-------hCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence               4499999999999986       222   4677899999985    5689999999999976

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.75  E-value=1e-15  Score=151.60  Aligned_cols=329  Identities=10%  Similarity=-0.007  Sum_probs=210.9

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchH
Q 010063          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL  201 (519)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  201 (519)
                      ...+. +...|++++|...|+++++.          .|....++..++..+...|++++|...|++++...       |.
T Consensus        17 ~~l~~-~~~~~~~~~a~~~~e~al~~----------~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-------p~   78 (530)
T 2ooe_A           17 SILIR-EAQNQPIDKARKTYERLVAQ----------FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-------LH   78 (530)
T ss_dssp             HHHHH-HHHSSCHHHHHHHHHHHHTT----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-------CC
T ss_pred             HHHHH-HHHhCCHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CC
Confidence            33444 35689999999999999987          78888999999999999999999999999998764       22


Q ss_pred             HHHHHHHHHH-HHHccccHHHHHH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh---------cCCHHHHHHH
Q 010063          202 LDAILLHMGS-MYSTLENYEKSML----VYQRVINVLESRYGKTSILLVTSLLGMAKVLGS---------IGRAKKAVEI  267 (519)
Q Consensus       202 ~~~~~~~l~~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---------~g~~~~A~~~  267 (519)
                      . ..|...+. .....|++++|.+    .|++++..    .+. ++.....+...+.....         .|++++|..+
T Consensus        79 ~-~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~----~g~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~  152 (530)
T 2ooe_A           79 I-DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDK----IGM-EIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRV  152 (530)
T ss_dssp             H-HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHH----TTT-STTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHH
T ss_pred             h-HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH----CCC-CcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHH
Confidence            2 23555554 4445688887776    55555543    222 22223444455555443         6889999999


Q ss_pred             HHHHHHHH--------HH---------------------------------------hcCC----CChh-------hHHH
Q 010063          268 YHRVITIL--------EL---------------------------------------NRGT----ESAD-------LVLP  289 (519)
Q Consensus       268 ~~~al~~~--------~~---------------------------------------~~~~----~~~~-------~~~~  289 (519)
                      |+++++.-        ..                                       ....    -.|.       ....
T Consensus       153 y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~  232 (530)
T 2ooe_A          153 YQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM  232 (530)
T ss_dssp             HHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHH
T ss_pred             HHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHH
Confidence            98887520        00                                       0000    0000       0011


Q ss_pred             HHHHHHHHHh----CCCH----HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-------CCCHH-------H
Q 010063          290 LFSLGSLFIK----EGKA----VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-------NGNAE-------E  347 (519)
Q Consensus       290 ~~~la~~~~~----~g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~-------~  347 (519)
                      +.........    .++.    .+++..|++++...        |....++..+|..+..       .|+++       +
T Consensus       233 w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~--------p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~  304 (530)
T 2ooe_A          233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL--------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE  304 (530)
T ss_dssp             HHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence            1111110000    0111    24555666666542        4445678888888876       79987       8


Q ss_pred             HHHHHHHHHH-HHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 010063          348 AVELYKKALR-VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS  426 (519)
Q Consensus       348 A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  426 (519)
                      |...++++++ .       .|+.   ..++..++.++...|++++|...|++++++     .+..+  ..++..++.++.
T Consensus       305 A~~~~~~Al~~~-------~p~~---~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~--~~~~~~~~~~~~  367 (530)
T 2ooe_A          305 AANIYERAISTL-------LKKN---MLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDP--TLVYIQYMKFAR  367 (530)
T ss_dssp             HHHHHHHHTTTT-------CSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----SSSCH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-------Cccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-----cccCc--hHHHHHHHHHHH
Confidence            8888888875 3       2333   456788999999999999999999999874     12222  247888888888


Q ss_pred             hccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHH-HHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHH
Q 010063          427 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT-LYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFV  505 (519)
Q Consensus       427 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  505 (519)
                      ..|++++|...|++++..        .|.....+...+.+ +...|++++|...|+++++..     ++++     ..+.
T Consensus       368 ~~~~~~~A~~~~~~Al~~--------~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-----p~~~-----~~~~  429 (530)
T 2ooe_A          368 RAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-----GDIP-----EYVL  429 (530)
T ss_dssp             HHHHHHHHHHHHHHHHTC--------TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-----TTCH-----HHHH
T ss_pred             HhcCHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-----CCCH-----HHHH
Confidence            889999999999988762        12223333344433 335788888888888887754     3333     2355


Q ss_pred             HHHHHHHHhhhc
Q 010063          506 LFGLVWFCLLLY  517 (519)
Q Consensus       506 ~l~~~~~~lg~~  517 (519)
                      .++..+..+|++
T Consensus       430 ~~~~~~~~~g~~  441 (530)
T 2ooe_A          430 AYIDYLSHLNED  441 (530)
T ss_dssp             HHHHHHTTTTCH
T ss_pred             HHHHHHHhCCCH
Confidence            666666666654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.75  E-value=2.3e-16  Score=137.70  Aligned_cols=170  Identities=12%  Similarity=0.165  Sum_probs=144.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCC
Q 010063          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS  241 (519)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  241 (519)
                      +..+..+|.++...|++++|+..|++++....   +.++   .+++.+|.++...|++++|+..+++++..        .
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~---~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~   72 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN---NQDS---VTAYNCGVCADNIKKYKEAADYFDIAIKK--------N   72 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT---TCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------T
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccC---CCCc---HHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------C
Confidence            47899999999999999999999999998752   1222   35777999999999999999999999874        3


Q ss_pred             HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCh----hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA----DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (519)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (519)
                      |....++..+|.++...|++++|+..+++++++.     ++++    ..+.++..+|.++...|++++|+..|++++++ 
T Consensus        73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-  146 (228)
T 4i17_A           73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV-  146 (228)
T ss_dssp             CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-
T ss_pred             cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc-
Confidence            4457889999999999999999999999999872     2222    12367999999999999999999999999874 


Q ss_pred             HHhcCCCChh--HHHHHHHHHHHHHHCCCH---------------------------HHHHHHHHHHHHH
Q 010063          318 TKVYGENDGR--VGMAMCSLAHAKCANGNA---------------------------EEAVELYKKALRV  358 (519)
Q Consensus       318 ~~~~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~  358 (519)
                             +|.  ...++.++|.++...|+.                           ++|+.++++++++
T Consensus       147 -------~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l  209 (228)
T 4i17_A          147 -------TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL  209 (228)
T ss_dssp             -------SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                   577  788999999999998888                           8888888888887

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.74  E-value=4.2e-16  Score=133.30  Aligned_cols=193  Identities=15%  Similarity=0.124  Sum_probs=154.2

Q ss_pred             hhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 010063          256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL  335 (519)
Q Consensus       256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  335 (519)
                      ...|++++|...++....        +.+....++..+|.++...|++++|+.++++++.+.+...  +.+....++.++
T Consensus         3 ~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l   72 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG--DHTAEHRALHQV   72 (203)
T ss_dssp             ----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHH
Confidence            467999999985544321        2346688999999999999999999999999999987652  456678899999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHH
Q 010063          336 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV  415 (519)
Q Consensus       336 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  415 (519)
                      |.++...|++++|+.++++++.+.+..   +.++.....++.++|.++...|++++|+.++++++.+.+...  +.....
T Consensus        73 ~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~  147 (203)
T 3gw4_A           73 GMVERMAGNWDAARRCFLEERELLASL---PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD--DQVAIA  147 (203)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHc---CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc--chHHHH
Confidence            999999999999999999999998863   324446778889999999999999999999999999876652  344556


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHH
Q 010063          416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI  465 (519)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  465 (519)
                      .++..+|.++...|++++|..++++++++.++.  .+......++..++.
T Consensus       148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~  195 (203)
T 3gw4_A          148 CAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL--EDSEAVNELMTRLNG  195 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHhcccc
Confidence            778999999999999999999999999998875  233334444444443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.74  E-value=6.3e-16  Score=132.19  Aligned_cols=194  Identities=12%  Similarity=0.060  Sum_probs=155.9

Q ss_pred             HccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 010063          214 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSL  293 (519)
Q Consensus       214 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  293 (519)
                      ...|++++|...++...        .+......++..+|.++...|++++|+.++++++++.+...  +.+....++.++
T Consensus         3 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l   72 (203)
T 3gw4_A            3 FEAHDYALAERQAQALL--------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG--DHTAEHRALHQV   72 (203)
T ss_dssp             ----CHHHHHHHHHHHH--------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHhc--------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHH
Confidence            46789999998554331        13335688899999999999999999999999999987754  456778899999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHH
Q 010063          294 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME  373 (519)
Q Consensus       294 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  373 (519)
                      |.++...|++++|+.++++++.+.+.. +.+......++.++|.++...|++++|+.++++++.+.+..    .+.....
T Consensus        73 ~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~  147 (203)
T 3gw4_A           73 GMVERMAGNWDAARRCFLEERELLASL-PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA----DDQVAIA  147 (203)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT----TCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc----cchHHHH
Confidence            999999999999999999999998754 22223677889999999999999999999999999987763    4555667


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 010063          374 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS  424 (519)
Q Consensus       374 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  424 (519)
                      .++.++|.++...|++++|..++++++++.++..  +......++..++.+
T Consensus       148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~~~  196 (203)
T 3gw4_A          148 CAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE--DSEAVNELMTRLNGL  196 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHhcccch
Confidence            7789999999999999999999999999988762  334445555555543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.73  E-value=5.3e-16  Score=140.93  Aligned_cols=195  Identities=9%  Similarity=0.018  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC
Q 010063          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT  281 (519)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  281 (519)
                      ....+...+..+...|++++|+..+.++++....  .+........+..+|.++...|++++|+.++++++++....  .
T Consensus        74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~  149 (293)
T 2qfc_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY--HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--I  149 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC--CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS--S
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC--ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--C
Confidence            3344667888999999999999999998875321  01112345567789999999999999999999999764332  1


Q ss_pred             CChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063          282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (519)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (519)
                      +......+++++|.+|...|++++|+.++++++++.+...  +.+. ...++.++|.+|..+|++++|+.++++++++..
T Consensus       150 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~  227 (293)
T 2qfc_A          150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            3334577999999999999999999999999999877652  2333 337899999999999999999999999999976


Q ss_pred             hhccCCCCchHHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHh
Q 010063          361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEG-RELLEECLLITEKY  406 (519)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~  406 (519)
                      .    ..+......++.++|.+|...|++++| ..++++++.+.+..
T Consensus       228 ~----~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~  270 (293)
T 2qfc_A          228 R----INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             H----TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             h----cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence            5    244555677899999999999999999 88899999988765

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.73  E-value=9.6e-16  Score=139.23  Aligned_cols=194  Identities=9%  Similarity=0.027  Sum_probs=159.4

Q ss_pred             HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhh---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 010063          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL---VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  319 (519)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  319 (519)
                      .....+...+..+...|++++|...++++++..     +..+..   ...+..+|.++...|++++|+.++++++.+...
T Consensus        73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~  147 (293)
T 3u3w_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT  147 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC
T ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-----cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc
Confidence            334445566788899999999999999998741     122322   345567999999999999999999999985322


Q ss_pred             hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010063          320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  399 (519)
Q Consensus       320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  399 (519)
                      .  .+....+.++.++|.+|...|++++|+.+++++++..+..   +.+.+....++.++|.+|..+|++++|+.+++++
T Consensus       148 ~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a  222 (293)
T 3u3w_A          148 G--IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL---HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA  222 (293)
T ss_dssp             C--SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             c--ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc---ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            1  2233456689999999999999999999999999988763   3467777889999999999999999999999999


Q ss_pred             HHHHHHhhCCCChhHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHHHh
Q 010063          400 LLITEKYKGKEHPSFVTHLLNLAASYSRSKN-FVEAERLLRICLDIMTKT  448 (519)
Q Consensus       400 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~  448 (519)
                      +++..+.  .+.+..+.++.++|.+|..+|+ +++|+.+|++|+.+++..
T Consensus       223 l~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~  270 (293)
T 3u3w_A          223 IEISCRI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             HHHHHHT--TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHc--CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            9998775  3456678999999999999995 699999999999999875

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.73  E-value=9.8e-16  Score=139.18  Aligned_cols=192  Identities=11%  Similarity=0.015  Sum_probs=159.7

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHH---HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhh
Q 010063          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEE---VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS  194 (519)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  194 (519)
                      ...+...+..+...|++++|+..++++++.       ....+..   ...+..+|.++...|++++|+.++++++.+...
T Consensus        75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~  147 (293)
T 3u3w_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKK-------EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT  147 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHhcc-------ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc
Confidence            344666788899999999999999998874       2333332   334556899999999999999999999986543


Q ss_pred             cCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010063          195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (519)
Q Consensus       195 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (519)
                      . .+......++.++|.+|...|++++|+.+|+++++..+.. ..+.+..+.++.++|.+|..+|++++|+.++++++++
T Consensus       148 ~-~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~  225 (293)
T 3u3w_A          148 G-IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             C-SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             c-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            2 2334456679999999999999999999999999988764 2356778889999999999999999999999999999


Q ss_pred             HHHhcCCCChhhHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHh
Q 010063          275 LELNRGTESADLVLPLFSLGSLFIKEGK-AVDAESVFSRILKIYTKV  320 (519)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~  320 (519)
                      .....  +....+.++.++|.+|..+|+ +++|+.++++++.+++..
T Consensus       226 ~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~  270 (293)
T 3u3w_A          226 SCRIN--SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             HHHTT--BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHcC--cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            87753  455678999999999999995 699999999999998876

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.72  E-value=7.4e-15  Score=133.36  Aligned_cols=192  Identities=11%  Similarity=-0.003  Sum_probs=157.8

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhh
Q 010063          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI---EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD  193 (519)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  193 (519)
                      ....+...+..+...|++++|++.++++++.       .+..+   .....+..+|.++...|++++|+..+++++....
T Consensus        74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  146 (293)
T 2qfc_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKK-------EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL  146 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------CCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcc-------ccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence            3445778888999999999999999998875       22222   2345567799999999999999999999998765


Q ss_pred             hcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010063          194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSIL-LVTSLLGMAKVLGSIGRAKKAVEIYHRVI  272 (519)
Q Consensus       194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al  272 (519)
                      .. .+......+++.+|.+|...|++++|+.+|++++++.+...  +.+. ...++.++|.+|...|++++|+.++++++
T Consensus       147 ~~-~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal  223 (293)
T 2qfc_A          147 TG-IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             CS-SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cC-CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence            42 33344567899999999999999999999999999877642  3333 34789999999999999999999999999


Q ss_pred             HHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHHHh
Q 010063          273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDA-ESVFSRILKIYTKV  320 (519)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~  320 (519)
                      ++.....  +....+.++.++|.+|...|++++| ..++++++.+.+..
T Consensus       224 ~~~~~~~--~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~  270 (293)
T 2qfc_A          224 EISCRIN--SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             HHHHHTT--BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhcC--cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence            9975532  3455688999999999999999999 88899999988765

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.72  E-value=6.2e-15  Score=142.19  Aligned_cols=239  Identities=8%  Similarity=-0.028  Sum_probs=196.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC----------chHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Q 010063          165 LDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD----------EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE  234 (519)
Q Consensus       165 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  234 (519)
                      ....|..+...|+|++|++.|.++++.....+..          ......++..+|.+|...|++++|..++.+++....
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            4456777889999999999999998865432211          123455689999999999999999999999999876


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010063          235 SRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL  314 (519)
Q Consensus       235 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  314 (519)
                      ..  .+......+...++.++...|++++|+.++++++.+.....  +.+....++.++|.+|...|++++|..++++++
T Consensus        87 ~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~  162 (434)
T 4b4t_Q           87 QF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK--RVFLKHSLSIKLATLHYQKKQYKDSLALINDLL  162 (434)
T ss_dssp             TS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS--CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             Hc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence            53  22234456677889999999999999999999999987764  456678899999999999999999999999999


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHH
Q 010063          315 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE  394 (519)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  394 (519)
                      ......  .+.+..+.++..++.+|...|++++|..++++++.+....   ..++......+..+|.++...|++++|..
T Consensus       163 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~y~~A~~  237 (434)
T 4b4t_Q          163 REFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI---YCPTQTVAELDLMSGILHCEDKDYKTAFS  237 (434)
T ss_dssp             HHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred             HHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC---CCchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            877654  3567788899999999999999999999999999987763   33445567788899999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCh
Q 010063          395 LLEECLLITEKYKGKEHP  412 (519)
Q Consensus       395 ~~~~al~~~~~~~~~~~~  412 (519)
                      +|.+++............
T Consensus       238 ~~~~a~~~~~~~~~~~~~  255 (434)
T 4b4t_Q          238 YFFESFESYHNLTTHNSY  255 (434)
T ss_dssp             HHHHHHHHHHHTTTSSCH
T ss_pred             HHHHHHHHhhhhhhhhhH
Confidence            999999988776444433

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.71  E-value=3.4e-14  Score=140.56  Aligned_cols=306  Identities=15%  Similarity=0.076  Sum_probs=210.5

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-HHHhcCChHHHHH----HHHHHHhhhhhc
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIAL-GYVYIGDLKFVQS----LLDMMSGIVDSL  195 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~----~~~~~~~~~~~~  195 (519)
                      ....+......|++++|...|++++..          .|. ..++..++. .....|++++|.+    .|++++...   
T Consensus        49 w~~~~~~~~~~~~~~~a~~~~~ral~~----------~p~-~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~---  114 (530)
T 2ooe_A           49 WKLYIEAEIKAKNYDKVEKLFQRCLMK----------VLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKI---  114 (530)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTT----------CCC-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhc----------CCC-hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHC---
Confidence            556677778899999999999999876          443 446666664 4456788888776    666665543   


Q ss_pred             CCCchHHHHHHHHHHHHHHc---------cccHHHHHHHHHHHHHHHHHhcCCCCH-HH---------------------
Q 010063          196 KDDEPLLDAILLHMGSMYST---------LENYEKSMLVYQRVINVLESRYGKTSI-LL---------------------  244 (519)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~al~~~~~~~~~~~~-~~---------------------  244 (519)
                      + .++....+|...+.....         .|++++|...|++++..     ..... ..                     
T Consensus       115 g-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-----P~~~~~~~~~~~~~~e~~~~~~~~~~~l~  188 (530)
T 2ooe_A          115 G-MEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-----PMINIEQLWRDYNKYEEGINIHLAKKMIE  188 (530)
T ss_dssp             T-TSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-----CCTTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             C-CCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-----hhhhHHHHHHHHHHHHHhhchhHHHHHHH
Confidence            2 122223345555555543         78999999999998752     00000 00                     


Q ss_pred             -----------------------------------------HHHHHHHHHHHhh----cCCH----HHHHHHHHHHHHHH
Q 010063          245 -----------------------------------------VTSLLGMAKVLGS----IGRA----KKAVEIYHRVITIL  275 (519)
Q Consensus       245 -----------------------------------------~~~~~~la~~~~~----~g~~----~~A~~~~~~al~~~  275 (519)
                                                               ...+.........    .++.    .+++..|++++.. 
T Consensus       189 ~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-  267 (530)
T 2ooe_A          189 DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-  267 (530)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-
Confidence                                                     0011111000000    0111    2455666666665 


Q ss_pred             HHhcCCCChhhHHHHHHHHHHHHh-------CCCHH-------HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 010063          276 ELNRGTESADLVLPLFSLGSLFIK-------EGKAV-------DAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA  341 (519)
Q Consensus       276 ~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  341 (519)
                             .|....++..+|..+..       .|+++       +|...++++++.       ..|.....+..+|.++..
T Consensus       268 -------~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-------~~p~~~~l~~~~~~~~~~  333 (530)
T 2ooe_A          268 -------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-------LLKKNMLLYFAYADYEES  333 (530)
T ss_dssp             -------HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-------TCSSCHHHHHHHHHHHHH
T ss_pred             -------CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-------hCcccHHHHHHHHHHHHh
Confidence                   34557888899998886       79987       777777777751       245666789999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHH
Q 010063          342 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNL  421 (519)
Q Consensus       342 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  421 (519)
                      .|++++|...|+++++.       .+..+  ..++..++.++.+.|++++|+..|+++++.        .|.....+...
T Consensus       334 ~g~~~~A~~~~~~al~~-------~p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--------~~~~~~~~~~~  396 (530)
T 2ooe_A          334 RMKYEKVHSIYNRLLAI-------EDIDP--TLVYIQYMKFARRAEGIKSGRMIFKKARED--------ARTRHHVYVTA  396 (530)
T ss_dssp             TTCHHHHHHHHHHHHHS-------SSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------TTCCTHHHHHH
T ss_pred             cCCHHHHHHHHHHHhCc-------cccCc--hHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------cCCchHHHHHH
Confidence            99999999999999985       33332  236788999999999999999999999863        12222333344


Q ss_pred             HHH-HHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063          422 AAS-YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (519)
Q Consensus       422 a~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (519)
                      +.+ +...|++++|...|+++++..        |....++..++.++...|+.++|..+|++++..
T Consensus       397 a~~~~~~~~~~~~A~~~~e~al~~~--------p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~  454 (530)
T 2ooe_A          397 ALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  454 (530)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCChhHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence            443 446899999999999999853        444567789999999999999999999999874

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.71  E-value=1e-15  Score=140.06  Aligned_cols=223  Identities=9%  Similarity=0.013  Sum_probs=178.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHHh-hhhhcCCCc
Q 010063          135 NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY-------IGDL-------KFVQSLLDMMSG-IVDSLKDDE  199 (519)
Q Consensus       135 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~~~~~~  199 (519)
                      ++|+..|++++..          .|..+.++..+|..+..       .|++       ++|...|++++. +.       
T Consensus        33 ~~a~~~~~~al~~----------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-------   95 (308)
T 2ond_A           33 KRVMFAYEQCLLV----------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-------   95 (308)
T ss_dssp             HHHHHHHHHHHHH----------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-------
T ss_pred             HHHHHHHHHHHHH----------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-------
Confidence            6888999999988          77788899999988864       5886       899999999987 43       


Q ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (519)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (519)
                      |....++..+|.++...|++++|...|++++++     .++++.  .++..+|.++...|++++|+..|+++++.     
T Consensus        96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----  163 (308)
T 2ond_A           96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPT--LVYIQYMKFARRAEGIKSGRMIFKKARED-----  163 (308)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTH--HHHHHHHHHHHHHHCHHHHHHHHHHHHTS-----
T ss_pred             cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cccCcc--HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----
Confidence            444556899999999999999999999999874     233332  27888999999999999999999999875     


Q ss_pred             CCCChhhHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          280 GTESADLVLPLFSLGSLFI-KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                         .|.....+...+.+.. ..|++++|...|+++++..        |.....+..++.++...|++++|..+|++++..
T Consensus       164 ---~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          164 ---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             ---TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             ---CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence               2333455555555543 3799999999999999863        444567899999999999999999999999874


Q ss_pred             HHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010063          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (519)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (519)
                      ..    ..+  .....++..++..+...|++++|..+++++++..
T Consensus       233 ~~----l~p--~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~  271 (308)
T 2ond_A          233 GS----LPP--EKSGEIWARFLAFESNIGDLASILKVEKRRFTAF  271 (308)
T ss_dssp             SS----SCG--GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred             cC----CCH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence            10    011  1224566788999999999999999999998865

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.71  E-value=5.3e-15  Score=142.67  Aligned_cols=239  Identities=11%  Similarity=0.039  Sum_probs=194.4

Q ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCC---------CCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010063          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK---------TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (519)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (519)
                      ....|..+...|++++|++.|.++++..+.....         .......++..+|.+|...|++++|.+++.+++.+..
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            4456777888999999999999998764322110         0123456788999999999999999999999999876


Q ss_pred             HhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010063          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  356 (519)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  356 (519)
                      ...  +......+...++.++...|++++|+.++++++.+.....  +.+..+.++.++|.++...|++++|..++++++
T Consensus        87 ~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~  162 (434)
T 4b4t_Q           87 QFA--KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK--RVFLKHSLSIKLATLHYQKKQYKDSLALINDLL  162 (434)
T ss_dssp             TSC--HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS--CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             Hcc--chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence            542  2233456778899999999999999999999999987753  455678889999999999999999999999999


Q ss_pred             HHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHH
Q 010063          357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER  436 (519)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  436 (519)
                      .....    ..+.+....++..++.+|...|++++|..++++++.+..... ..+......+..+|.++...|++++|..
T Consensus       163 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~y~~A~~  237 (434)
T 4b4t_Q          163 REFKK----LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY-CPTQTVAELDLMSGILHCEDKDYKTAFS  237 (434)
T ss_dssp             HHHTT----SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred             HHHHh----cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC-CchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            88765    355677788999999999999999999999999999887652 2223456788899999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCC
Q 010063          437 LLRICLDIMTKTVGPDD  453 (519)
Q Consensus       437 ~~~~al~~~~~~~~~~~  453 (519)
                      +|.+++...........
T Consensus       238 ~~~~a~~~~~~~~~~~~  254 (434)
T 4b4t_Q          238 YFFESFESYHNLTTHNS  254 (434)
T ss_dssp             HHHHHHHHHHHTTTSSC
T ss_pred             HHHHHHHHhhhhhhhhh
Confidence            99999998877644443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.71  E-value=2.3e-16  Score=148.72  Aligned_cols=115  Identities=16%  Similarity=0.075  Sum_probs=112.4

Q ss_pred             HcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 010063          385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG  464 (519)
Q Consensus       385 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  464 (519)
                      ..|+|++|+.++++++++.++.+|++||.++.++.+||.+|..+|+|++|+.++++++++.++.+|++||+++.++++||
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcch
Q 010063          465 ITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVG  499 (519)
Q Consensus       465 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  499 (519)
                      .+|..+|++++|+.+|++|+++.+..+|++||.+.
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            99999999999999999999999999999999874

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.70  E-value=5e-15  Score=135.50  Aligned_cols=222  Identities=12%  Similarity=0.074  Sum_probs=174.0

Q ss_pred             HHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHc-------cccH-------HHHHHHHHHHHHHHHHhcCCCCHHH
Q 010063          179 KFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYST-------LENY-------EKSMLVYQRVINVLESRYGKTSILL  244 (519)
Q Consensus       179 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~al~~~~~~~~~~~~~~  244 (519)
                      ++|+..|++++...       |....+|+.+|..+..       .|++       ++|+..|++++...       .|..
T Consensus        33 ~~a~~~~~~al~~~-------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-------~p~~   98 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-------LKKN   98 (308)
T ss_dssp             HHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-------TTTC
T ss_pred             HHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-------Cccc
Confidence            68888999998876       4445568888888763       4775       89999999998721       2334


Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCC
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL-PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  323 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  323 (519)
                      ..++..+|.++...|++++|...|++++++        .|.... ++..+|.++...|++++|...|+++++.       
T Consensus        99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-------  163 (308)
T 2ond_A           99 MLLYFAYADYEESRMKYEKVHSIYNRLLAI--------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-------  163 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-------
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------
Confidence            667889999999999999999999999985        333333 8899999999999999999999999874       


Q ss_pred             CChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063          324 NDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (519)
Q Consensus       324 ~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (519)
                       .|.....+...+.+... .|++++|...|+++++...       +.   ..++..++.++...|++++|+.+|++++..
T Consensus       164 -~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-------~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          164 -ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-------DI---PEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             -TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             -CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------Cc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence             22223445555555433 7999999999999999842       23   356688999999999999999999999873


Q ss_pred             HHHhhCCCCh-hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010063          403 TEKYKGKEHP-SFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (519)
Q Consensus       403 ~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (519)
                      .     ...| .....+..++..+...|++++|..+++++++..
T Consensus       233 ~-----~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~  271 (308)
T 2ond_A          233 G-----SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF  271 (308)
T ss_dssp             S-----SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred             c-----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence            1     0133 245678888999999999999999999999853

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.69  E-value=2.9e-16  Score=148.53  Aligned_cols=134  Identities=10%  Similarity=-0.074  Sum_probs=125.7

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHH
Q 010063          380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP  459 (519)
Q Consensus       380 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  459 (519)
                      ..-+..+|++++|+..+++++++.++.+|++||.++.++.++|.+|..+|+|++|+.++++++.+.++.+|++||.++..
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            33455789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhh
Q 010063          460 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLL  515 (519)
Q Consensus       460 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg  515 (519)
                      +++||.+|..+|++++|+.++++|+++.+..+|++||.+  ...+.+|+.+..+++
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~--~~~~~~l~~~~~e~~  427 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI--EDLILLLEECDANIR  427 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH--HHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999988  456788998887664

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.69  E-value=8.3e-15  Score=127.33  Aligned_cols=177  Identities=13%  Similarity=0.066  Sum_probs=146.5

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (519)
                      ...++.+|..+...|++++|+..|+++++.     .++++....++..+|.+|...|++++|+..|+++++..     ++
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----P~   73 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PT   73 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cC
Confidence            456788999999999999999999999986     33455567889999999999999999999999999863     45


Q ss_pred             ChhHHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHHHHhhccCCCCchHHHH------------
Q 010063          325 DGRVGMAMCSLAHAKCA------------------NGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN------------  374 (519)
Q Consensus       325 ~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------------  374 (519)
                      ++....++..+|.++..                  .|++++|+..|+++++..       |+.+....            
T Consensus        74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------P~~~~a~~a~~~l~~~~~~~  146 (225)
T 2yhc_A           74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-------PNSQYTTDATKRLVFLKDRL  146 (225)
T ss_dssp             CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-------TTCTTHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-------cCChhHHHHHHHHHHHHHHH
Confidence            56666788888988876                  678999999999998863       33332221            


Q ss_pred             --HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063          375 --MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (519)
Q Consensus       375 --~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (519)
                        ....+|.+|...|++++|+..|+++++..     ++.+....++..+|.+|..+|++++|+..++++..
T Consensus       147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~  212 (225)
T 2yhc_A          147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA  212 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence              22578999999999999999999999864     44566678999999999999999999999997766

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.69  E-value=5.1e-15  Score=128.68  Aligned_cols=177  Identities=10%  Similarity=-0.006  Sum_probs=145.8

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCC
Q 010063          287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS  366 (519)
Q Consensus       287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  366 (519)
                      ...++.+|..+...|++++|+..|+++++.     .+.++....++..+|.++...|++++|+..|+++++.       .
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-------~   71 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-------N   71 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------C
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------C
Confidence            467889999999999999999999999985     2345556778999999999999999999999999987       4


Q ss_pred             CCchHHHHHHHHHHHHHHH------------------cCChHHHHHHHHHHHHHHHHhhCCCChhHH-------------
Q 010063          367 LDDSIMENMRIDLAELLHI------------------VGRGQEGRELLEECLLITEKYKGKEHPSFV-------------  415 (519)
Q Consensus       367 ~~~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-------------  415 (519)
                      |+++....++..+|.++..                  .|++++|+..|+++++..     ++++...             
T Consensus        72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----P~~~~a~~a~~~l~~~~~~~  146 (225)
T 2yhc_A           72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-----PNSQYTTDATKRLVFLKDRL  146 (225)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-----TTCTTHHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHH
Confidence            5555555677888888876                  578999999999988753     2333222             


Q ss_pred             -HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010063          416 -THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  485 (519)
Q Consensus       416 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  485 (519)
                       .....+|.+|...|++++|+..|+++++..     |+++....++..+|.+|..+|++++|+..++++..
T Consensus       147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~  212 (225)
T 2yhc_A          147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA  212 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence             122578999999999999999999999853     55666678899999999999999999999987765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.68  E-value=3.1e-15  Score=125.63  Aligned_cols=173  Identities=16%  Similarity=0.101  Sum_probs=148.1

Q ss_pred             ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (519)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (519)
                      .......+..+|.++...|++++|+..+++++...       |....++..+|.++...|++++|+.+++++++..    
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----   72 (186)
T 3as5_A            4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA----   72 (186)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----
Confidence            44567788999999999999999999998876543       2234568899999999999999999999998862    


Q ss_pred             CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (519)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (519)
                          |....++..+|.++...|++++|..+++++++.        .|....++..+|.++...|++++|+.++++++.. 
T Consensus        73 ----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-  139 (186)
T 3as5_A           73 ----PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL-  139 (186)
T ss_dssp             ----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             ----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-
Confidence                223567889999999999999999999999987        3455688899999999999999999999999985 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (519)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (519)
                             .|....++..+|.++...|++++|..+++++++....
T Consensus       140 -------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  176 (186)
T 3as5_A          140 -------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG  176 (186)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred             -------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence                   2444568899999999999999999999999988643

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.67  E-value=2.8e-15  Score=125.94  Aligned_cols=170  Identities=16%  Similarity=0.097  Sum_probs=146.1

Q ss_pred             hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010063          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (519)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (519)
                      ......+..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|+.+++++++.     
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----   71 (186)
T 3as5_A            5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-----   71 (186)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Confidence            445678889999999999999999999998763        3445678899999999999999999999999987     


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (519)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (519)
                        .++.   ..++..+|.++...|++++|..++++++..        .|....++..+|.++...|++++|+.++++++.
T Consensus        72 --~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  138 (186)
T 3as5_A           72 --APDN---VKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALG  138 (186)
T ss_dssp             --CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence              2333   346688999999999999999999999875        233456788999999999999999999999988


Q ss_pred             HHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                      .        .|....++..+|.++...|++++|..++++++++.
T Consensus       139 ~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  174 (186)
T 3as5_A          139 L--------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD  174 (186)
T ss_dssp             H--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             c--------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            4        24446788999999999999999999999999876

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.67  E-value=2.6e-14  Score=147.24  Aligned_cols=254  Identities=11%  Similarity=0.005  Sum_probs=153.9

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHH
Q 010063          125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA  204 (519)
Q Consensus       125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  204 (519)
                      |..+...|.+++|..+|+++-..           ..      .+...+...|++++|.++++++            ....
T Consensus      1056 A~Iai~lglyEEAf~IYkKa~~~-----------~~------A~~VLie~i~nldrAiE~Aerv------------n~p~ 1106 (1630)
T 1xi4_A         1056 ANIAISNELFEEAFAIFRKFDVN-----------TS------AVQVLIEHIGNLDRAYEFAERC------------NEPA 1106 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHHcCCH-----------HH------HHHHHHHHHhhHHHHHHHHHhc------------CCHH
Confidence            55666777777777777764211           00      0111223556666666666543            1123


Q ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA  284 (519)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  284 (519)
                      +|+.+|.++...|++++|+..|.++         .+    ...+..+|.++...|++++|+++|..+.+..+.       
T Consensus      1107 vWsqLAKAql~~G~~kEAIdsYiKA---------dD----~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e------- 1166 (1630)
T 1xi4_A         1107 VWSQLAKAQLQKGMVKEAIDSYIKA---------DD----PSSYMEVVQAANTSGNWEELVKYLQMARKKARE------- 1166 (1630)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHhc---------CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-------
Confidence            4777777777777777777777664         11    345566777777777777777777777664211       


Q ss_pred             hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010063          285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  364 (519)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  364 (519)
                        ..+-..+|.+|.+.+++++.. .|   +.         .+.. ..+..+|..+...|+|++|..+|.++-        
T Consensus      1167 --~~Idt~LafaYAKl~rleele-~f---I~---------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA~-------- 1222 (1630)
T 1xi4_A         1167 --SYVETELIFALAKTNRLAELE-EF---IN---------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNVS-------- 1222 (1630)
T ss_pred             --ccccHHHHHHHHhhcCHHHHH-HH---Hh---------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhh--------
Confidence              011123777777777766432 22   11         1222 244567888888888888888777741        


Q ss_pred             CCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063          365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (519)
Q Consensus       365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (519)
                                .|..++.++.+.|++++|++.+++|..             ..+|...+.++...|++..|..+... +. 
T Consensus      1223 ----------ny~rLA~tLvkLge~q~AIEaarKA~n-------------~~aWkev~~acve~~Ef~LA~~cgl~-Ii- 1277 (1630)
T 1xi4_A         1223 ----------NFGRLASTLVHLGEYQAAVDGARKANS-------------TRTWKEVCFACVDGKEFRLAQMCGLH-IV- 1277 (1630)
T ss_pred             ----------HHHHHHHHHHHhCCHHHHHHHHHHhCC-------------HHHHHHHHHHHhhhhHHHHHHHHHHh-hh-
Confidence                      336677777788888888877777622             14555666666666666666665543 11 


Q ss_pred             HHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063          445 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (519)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (519)
                             .+++   .+..++..|...|.+++|+.++++++.+
T Consensus      1278 -------v~~d---eLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A         1278 -------VHAD---ELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred             -------cCHH---HHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence                   1222   2346677777788888888887777654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.66  E-value=7.2e-16  Score=156.39  Aligned_cols=200  Identities=15%  Similarity=0.150  Sum_probs=162.8

Q ss_pred             HHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHH
Q 010063          129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH  208 (519)
Q Consensus       129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (519)
                      ...|++++|++.++++++.....  .....|..+.++..+|.++...|++++|+..++++++..       |....+++.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~--~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~  472 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDA--DGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-------GWRWRLVWY  472 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------CCCHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccc--cccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-------cchHHHHHH
Confidence            77899999999999998211000  012267778899999999999999999999999999875       444567999


Q ss_pred             HHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 010063          209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL  288 (519)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  288 (519)
                      +|.++...|++++|+..|++++++.        |....++.++|.++...|++++ +..|++++++        +|....
T Consensus       473 lg~~~~~~g~~~~A~~~~~~al~l~--------P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~~  535 (681)
T 2pzi_A          473 RAVAELLTGDYDSATKHFTEVLDTF--------PGELAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVIS  535 (681)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchHH
Confidence            9999999999999999999999873        3336778899999999999999 9999999997        566788


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHhh
Q 010063          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA-VELYKKALRVIKDS  362 (519)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~  362 (519)
                      +++++|.++...|++++|+..|++++++        +|....++.++|.++...++.+++ ..-++++++.....
T Consensus       536 a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  602 (681)
T 2pzi_A          536 AAFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL  602 (681)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence            9999999999999999999999999873        678888999999999888876666 67777787777653

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.66  E-value=6.5e-16  Score=156.73  Aligned_cols=200  Identities=14%  Similarity=0.104  Sum_probs=161.3

Q ss_pred             hhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 010063          256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL  335 (519)
Q Consensus       256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  335 (519)
                      ...|++++|++.++++++..-......+|....++..+|.++...|++++|+..++++++.        +|....++.++
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~l  473 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVWYR  473 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHHHH
Confidence            7889999999999999822111112235777889999999999999999999999999986        35556789999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHH
Q 010063          336 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV  415 (519)
Q Consensus       336 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  415 (519)
                      |.++...|++++|+..|++++++       .+++   ..++.++|.++...|++++ +..|++++++        +|...
T Consensus       474 g~~~~~~g~~~~A~~~~~~al~l-------~P~~---~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~  534 (681)
T 2pzi_A          474 AVAELLTGDYDSATKHFTEVLDT-------FPGE---LAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVI  534 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH-------STTC---SHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh-------CCCC---hHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchH
Confidence            99999999999999999999998       3333   3466899999999999999 9999999985        45556


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHH-HHHHHHHHHHHHHh
Q 010063          416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA-EKLVLEALYIREIA  490 (519)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~~~~~  490 (519)
                      .++.++|.++..+|++++|+..|+++++        .+|....++.++|.++...|+.+++ ..-++++++..+..
T Consensus       535 ~a~~~lg~~~~~~g~~~~A~~~~~~al~--------l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  602 (681)
T 2pzi_A          535 SAAFGLARARSAEGDRVGAVRTLDEVPP--------TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL  602 (681)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSCT--------TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhcc--------cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence            7899999999999999999999999987        3577788899999999888876666 67777887777654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.66  E-value=3.9e-15  Score=140.30  Aligned_cols=124  Identities=9%  Similarity=0.117  Sum_probs=118.8

Q ss_pred             HHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 010063          213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS  292 (519)
Q Consensus       213 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  292 (519)
                      ....|+|++|+.++++++++.++.++++||.++.++.++|.+|..+|+|++|+.++++++++.++..|+++|.++..+++
T Consensus       308 ~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  387 (433)
T 3qww_A          308 AKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK  387 (433)
T ss_dssp             HTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 010063          293 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA  336 (519)
Q Consensus       293 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  336 (519)
                      ||.+|..+|++++|+.++++|+++.+..+|++||.+.....+|.
T Consensus       388 La~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          388 LGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            99999999999999999999999999999999999998877764

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.66  E-value=1.1e-14  Score=119.32  Aligned_cols=156  Identities=18%  Similarity=0.180  Sum_probs=137.1

Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010063          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (519)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (519)
                      .+..+.++..+|.++...|++++|+.+++++++..+..    .++.....++..+|.++...|++++|+.++++++.+..
T Consensus         5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   80 (164)
T 3ro3_A            5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF----GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR   80 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            34567789999999999999999999999999998763    45566677889999999999999999999999999987


Q ss_pred             HhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010063          405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL  484 (519)
Q Consensus       405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  484 (519)
                      ..  .+.+....++.++|.++...|++++|+.++++++.+....  .+.+....++..+|.++...|++++|..++++++
T Consensus        81 ~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  156 (164)
T 3ro3_A           81 QL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  156 (164)
T ss_dssp             HT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             Hh--CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            65  2445567889999999999999999999999999988765  3446677889999999999999999999999999


Q ss_pred             HHHH
Q 010063          485 YIRE  488 (519)
Q Consensus       485 ~~~~  488 (519)
                      ++.+
T Consensus       157 ~~~~  160 (164)
T 3ro3_A          157 EISR  160 (164)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            9874

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.66  E-value=2.3e-14  Score=117.45  Aligned_cols=158  Identities=15%  Similarity=0.137  Sum_probs=137.9

Q ss_pred             CCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 010063          240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  319 (519)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  319 (519)
                      +.+..+.++..+|.++...|++++|+.++++++++.+...  +......++..+|.++...|++++|+.++++++++...
T Consensus         4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   81 (164)
T 3ro3_A            4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ   81 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3456688899999999999999999999999999987753  34556788999999999999999999999999999876


Q ss_pred             hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010063          320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  399 (519)
Q Consensus       320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  399 (519)
                      .  .+.+....++.++|.++...|++++|+.+++++++.....    .+++....++..+|.++...|++++|..+++++
T Consensus        82 ~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  155 (164)
T 3ro3_A           82 L--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL----KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  155 (164)
T ss_dssp             T--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             h--CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc----cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            5  2344567789999999999999999999999999998763    456677788899999999999999999999999


Q ss_pred             HHHHHH
Q 010063          400 LLITEK  405 (519)
Q Consensus       400 l~~~~~  405 (519)
                      +++.++
T Consensus       156 ~~~~~~  161 (164)
T 3ro3_A          156 LEISRE  161 (164)
T ss_dssp             HHHHTT
T ss_pred             HHHHHH
Confidence            988754

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.66  E-value=9.8e-15  Score=125.06  Aligned_cols=166  Identities=17%  Similarity=0.156  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH----------------HHHHHHHCCCHHHHHH
Q 010063          287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCS----------------LAHAKCANGNAEEAVE  350 (519)
Q Consensus       287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~  350 (519)
                      +..+...|..+...|++++|+..|++++..        +|....++..                +|.++...|++++|+.
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~   75 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL   75 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence            456778899999999999999999999986        5666677777                9999999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccC
Q 010063          351 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN  430 (519)
Q Consensus       351 ~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  430 (519)
                      .|+++++.       .|++   ..++.++|.++...|++++|+..|++++++        .|....++.++|.+|...|+
T Consensus        76 ~~~~al~~-------~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           76 FYKELLQK-------APNN---VDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHHH-------CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhH
Confidence            99999998       3433   456789999999999999999999999985        45566789999999987765


Q ss_pred             H--HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          431 F--VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       431 ~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                      .  ..+...+++++.       +. | ...+++.+|.++...|++++|+.+|++++++.
T Consensus       138 ~~~~~~~~~~~~~~~-------~~-~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  187 (208)
T 3urz_A          138 QEKKKLETDYKKLSS-------PT-K-MQYARYRDGLSKLFTTRYEKARNSLQKVILRF  187 (208)
T ss_dssp             HHHHHHHHHHC---C-------CC-H-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHhC-------CC-c-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            4  445555555432       22 2 23356788999999999999999999999764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.65  E-value=9.8e-16  Score=123.59  Aligned_cols=147  Identities=15%  Similarity=0.097  Sum_probs=122.1

Q ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 010063          208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV  287 (519)
Q Consensus       208 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  287 (519)
                      .||.++..+|++++|+..+++++..        .|.....++.+|.+|...|++++|+.+|++++++        .|...
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~   65 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPS--------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDP   65 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhccc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence            4788999999999999999988653        4666778889999999999999999999999998        56778


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHhhccCC
Q 010063          288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVEL-YKKALRVIKDSNYMS  366 (519)
Q Consensus       288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~  366 (519)
                      .++..+|.+|...|++++|+..|++++++        +|....++.++|.++...|++++|... +++++++       .
T Consensus        66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-------~  130 (150)
T 4ga2_A           66 KAHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-------F  130 (150)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-------S
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-------C
Confidence            99999999999999999999999999986        466677899999999999999887665 6899988       4


Q ss_pred             CCchHHHHHHHHHHHHHHHcCC
Q 010063          367 LDDSIMENMRIDLAELLHIVGR  388 (519)
Q Consensus       367 ~~~~~~~~~~~~la~~~~~~g~  388 (519)
                      |+++.   ++...+.++..+|+
T Consensus       131 P~~~~---~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          131 PGSPA---VYKLKEQLLDCEGE  149 (150)
T ss_dssp             TTCHH---HHHHHHHHHHTCCC
T ss_pred             cCCHH---HHHHHHHHHHHhCc
Confidence            55544   45667888877775

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.65  E-value=7.2e-16  Score=124.38  Aligned_cols=147  Identities=12%  Similarity=0.004  Sum_probs=121.9

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 010063          167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT  246 (519)
Q Consensus       167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  246 (519)
                      .||.++...|++++|+..++++....       |.....++.+|.+|...|++++|+.+|++++++        +|....
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~-------p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~~   66 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSP-------RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDPK   66 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSH-------HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHH
Confidence            47888889999999999998876543       777777899999999999999999999999987        244477


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHH-HHHHHHHHHHhcCCCC
Q 010063          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESV-FSRILKIYTKVYGEND  325 (519)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~~  325 (519)
                      ++..+|.+|...|++++|+..|++++++        .|....++.++|.+|...|++++|... +++++++        +
T Consensus        67 a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--------~  130 (150)
T 4ga2_A           67 AHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--------F  130 (150)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--------S
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--------C
Confidence            8999999999999999999999999998        566788999999999999999887765 5899986        3


Q ss_pred             hhHHHHHHHHHHHHHHCCC
Q 010063          326 GRVGMAMCSLAHAKCANGN  344 (519)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~  344 (519)
                      |....++...+.++...|+
T Consensus       131 P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          131 PGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             TTCHHHHHHHHHHHHTCCC
T ss_pred             cCCHHHHHHHHHHHHHhCc
Confidence            5555677788888888775

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.65  E-value=1.6e-14  Score=123.66  Aligned_cols=165  Identities=16%  Similarity=0.170  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHH----------------HHHHHHccccHHHHHHH
Q 010063          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH----------------MGSMYSTLENYEKSMLV  225 (519)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~  225 (519)
                      +..+...|..+...|++++|+..|++++...       |....+++.                +|.++...|++++|+..
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~   76 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-------IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF   76 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4566788999999999999999999998875       666666777                99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCH--
Q 010063          226 YQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA--  303 (519)
Q Consensus       226 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--  303 (519)
                      |++++++.        |....++..+|.++...|++++|+..|++++++        .|....++.++|.+|...|+.  
T Consensus        77 ~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~  140 (208)
T 3urz_A           77 YKELLQKA--------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQEK  140 (208)
T ss_dssp             HHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHHHH
Confidence            99999872        344678999999999999999999999999997        567788999999999877643  


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          304 VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       304 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      ..+...+++++.         .+....++..+|..+...|++++|+.+|++++++
T Consensus       141 ~~~~~~~~~~~~---------~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          141 KKLETDYKKLSS---------PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHHHC---C---------CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhC---------CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            344555555432         2223346778899999999999999999999987

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.63  E-value=1.2e-13  Score=142.42  Aligned_cols=300  Identities=13%  Similarity=0.081  Sum_probs=206.2

Q ss_pred             HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHH
Q 010063          126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI  205 (519)
Q Consensus       126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  205 (519)
                      ..|-+.+.+.+|...+-+.+..+.+...-. .....+.+|..+|.++...|++++|+..|.++         ++   ...
T Consensus      1070 ~IYkKa~~~~~A~~VLie~i~nldrAiE~A-ervn~p~vWsqLAKAql~~G~~kEAIdsYiKA---------dD---~sa 1136 (1630)
T 1xi4_A         1070 AIFRKFDVNTSAVQVLIEHIGNLDRAYEFA-ERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA---------DD---PSS 1136 (1630)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---------CC---hHH
Confidence            334445556665444443332222211000 02244778999999999999999999999775         11   234


Q ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (519)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (519)
                      +..+|.++.+.|++++|+++|..+.+..+     +    ..+...+|.+|.+.+++++ .+.|   +.         .+.
T Consensus      1137 y~eVa~~~~~lGkyEEAIeyL~mArk~~~-----e----~~Idt~LafaYAKl~rlee-le~f---I~---------~~n 1194 (1630)
T 1xi4_A         1137 YMEVVQAANTSGNWEELVKYLQMARKKAR-----E----SYVETELIFALAKTNRLAE-LEEF---IN---------GPN 1194 (1630)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhcc-----c----ccccHHHHHHHHhhcCHHH-HHHH---Hh---------CCC
Confidence            78899999999999999999999877531     1    1112248999999999885 3333   11         122


Q ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 010063          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  365 (519)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  365 (519)
                      . ..+..+|..+...|+|++|..+|.++                ..|..++.++.+.|++++|++.++++...       
T Consensus      1195 ~-ad~~~iGd~le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLvkLge~q~AIEaarKA~n~------- 1250 (1630)
T 1xi4_A         1195 N-AHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANST------- 1250 (1630)
T ss_pred             H-HHHHHHHHHHHhcCCHHHHHHHHHhh----------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCH-------
Confidence            2 45667999999999999999999986                25778999999999999999999987332       


Q ss_pred             CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010063          366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (519)
Q Consensus       366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (519)
                              .+|...+.++...|++..|..+... +.        .+++   .+..++..|...|.+++|+.++++++.+ 
T Consensus      1251 --------~aWkev~~acve~~Ef~LA~~cgl~-Ii--------v~~d---eLeeli~yYe~~G~feEAI~LlE~aL~L- 1309 (1630)
T 1xi4_A         1251 --------RTWKEVCFACVDGKEFRLAQMCGLH-IV--------VHAD---ELEELINYYQDRGYFEELITMLEAALGL- 1309 (1630)
T ss_pred             --------HHHHHHHHHHhhhhHHHHHHHHHHh-hh--------cCHH---HHHHHHHHHHHcCCHHHHHHHHHHHhcc-
Confidence                    4667889999999999999887764 22        2333   3447888999999999999999999873 


Q ss_pred             HHhcCCCCcchhHHHHHHHHHHHh--cCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhc
Q 010063          446 TKTVGPDDQSISFPMLHLGITLYH--LNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLY  517 (519)
Q Consensus       446 ~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~  517 (519)
                             ++.....+..+|.+|.+  -++..++.++|...+.+.+-+-.-     ..+..|..+...|..-|+|
T Consensus      1310 -------eraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~-----e~~~lW~elv~LY~~~~e~ 1371 (1630)
T 1xi4_A         1310 -------ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAA-----EQAHLWAELVFLYDKYEEY 1371 (1630)
T ss_pred             -------ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHH-----HHHHHHHHHHHHHHhcccH
Confidence                   24445556667766654  466667777777665543211110     1123355666666666654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.62  E-value=6.9e-15  Score=139.11  Aligned_cols=133  Identities=12%  Similarity=0.075  Sum_probs=126.0

Q ss_pred             HHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 010063          209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL  288 (519)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  288 (519)
                      ...-+..+|++++|+..+++++++.++.++++|+.++.++.++|.+|..+|+|++|+.++++++++.++..|+++|.++.
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~  372 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV  372 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence            34446678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 010063          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA  341 (519)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  341 (519)
                      .+++||.+|..+|++++|+.++++|+++.+..+|++||.+..++.+|+.+...
T Consensus       373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN  425 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999887754

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.62  E-value=5.4e-16  Score=143.19  Aligned_cols=284  Identities=14%  Similarity=0.054  Sum_probs=126.1

Q ss_pred             HHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHH
Q 010063          129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH  208 (519)
Q Consensus       129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (519)
                      -..|+.++|.+++++.               +.+.+|..+|.++...|++++|++.|.++.           + ...+..
T Consensus        14 ~~~~~ld~A~~fae~~---------------~~~~vWs~La~A~l~~g~~~eAIdsfika~-----------D-~~~y~~   66 (449)
T 1b89_A           14 EHIGNLDRAYEFAERC---------------NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD-----------D-PSSYME   66 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHccCHHHHHHHHHhC---------------CChHHHHHHHHHHHHcCCHHHHHHHHHcCC-----------C-HHHHHH
Confidence            3567788999888875               123589999999999999999999997631           1 114778


Q ss_pred             HHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 010063          209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL  288 (519)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  288 (519)
                      ++..+...|++++|+.+++.+.+..        +. ..+...++.+|.+.|++.++.++++.             |. ..
T Consensus        67 V~~~ae~~g~~EeAi~yl~~ark~~--------~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------pn-~~  123 (449)
T 1b89_A           67 VVQAANTSGNWEELVKYLQMARKKA--------RE-SYVETELIFALAKTNRLAELEEFING-------------PN-NA  123 (449)
T ss_dssp             ---------------------------------------------------CHHHHTTTTTC-------------C----
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhC--------cc-chhHHHHHHHHHHhCCHHHHHHHHcC-------------Cc-HH
Confidence            8889999999999999998877631        11 34566789999999999998877742             22 24


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 010063          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD  368 (519)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  368 (519)
                      ++..+|..+...|+|++|..+|.++                ..+..+|.++.++|++++|++.++++..           
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~-----------  176 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANS-----------  176 (449)
T ss_dssp             -------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHTC-----------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcCC-----------
Confidence            8999999999999999999999976                2578899999999999999999999821           


Q ss_pred             chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Q 010063          369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  448 (519)
Q Consensus       369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (519)
                          ..+|..+..++...|+++.|..+.....         .+|+.   ...+..+|.+.|++++|+.++++++.+    
T Consensus       177 ----~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---------~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~l----  236 (449)
T 1b89_A          177 ----TRTWKEVCFACVDGKEFRLAQMCGLHIV---------VHADE---LEELINYYQDRGYFEELITMLEAALGL----  236 (449)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHTTTTTT---------TCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTS----
T ss_pred             ----chhHHHHHHHHHHcCcHHHHHHHHHHHH---------hCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCC----
Confidence                3456778899999999999966555311         35544   335888999999999999999999873    


Q ss_pred             cCCCCcchhHHHHHHHHHHHh--cCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063          449 VGPDDQSISFPMLHLGITLYH--LNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYK  518 (519)
Q Consensus       449 ~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~k  518 (519)
                         + +....++..||.+|.+  .++..++++.|...+.+.+-+-.-+.+     ..|..+.-+|..-|+|.
T Consensus       237 ---e-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~-----~~w~e~~~ly~~~~e~d  299 (449)
T 1b89_A          237 ---E-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQA-----HLWAELVFLYDKYEEYD  299 (449)
T ss_dssp             ---T-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTT-----TCHHHHHHHHHHTTCHH
T ss_pred             ---c-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHH-----HHHHHHHHHHHhhchHH
Confidence               2 4456667778877764  466777777776666555422111222     23667777777777653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.56  E-value=9.1e-14  Score=108.06  Aligned_cols=118  Identities=13%  Similarity=0.124  Sum_probs=103.3

Q ss_pred             CCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010063          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (519)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (519)
                      .-+|..+..+.++|..++..|++++|+..|++++++        +|....++.++|.++..+|++++|+..+++++++  
T Consensus         7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--   76 (126)
T 4gco_A            7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--   76 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--
Confidence            345889999999999999999999999999999986        2344678999999999999999999999999997  


Q ss_pred             HhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 010063          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA  338 (519)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  338 (519)
                            +|....++.++|.++..+|++++|+..|++++++        +|....++..++.+
T Consensus        77 ------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~  124 (126)
T 4gco_A           77 ------DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNC  124 (126)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred             ------hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHh
Confidence                  5667889999999999999999999999999996        45555667777654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.56  E-value=1.4e-13  Score=107.01  Aligned_cols=116  Identities=13%  Similarity=0.050  Sum_probs=102.0

Q ss_pred             CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (519)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (519)
                      +|..+..+.++|..++..|++++|+..|++++++        .|....++.++|.++..+|++++|+..+++++++    
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----   76 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL----   76 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh----
Confidence            5888999999999999999999999999999987        5667889999999999999999999999999986    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 010063          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL  382 (519)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~  382 (519)
                          +|....++.++|.++..+|++++|+..|++++++       .|++..   ++..++.+
T Consensus        77 ----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l-------~P~~~~---a~~~l~~~  124 (126)
T 4gco_A           77 ----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV-------DPSNEE---AREGVRNC  124 (126)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHH---HHHHHHHH
T ss_pred             ----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------CcCCHH---HHHHHHHh
Confidence                4566778999999999999999999999999998       444433   44556654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.55  E-value=1.1e-12  Score=117.59  Aligned_cols=251  Identities=6%  Similarity=-0.115  Sum_probs=199.1

Q ss_pred             HHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhhhh
Q 010063          117 QLLELFNEVKSMIMMGNK-NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIG--DLKFVQSLLDMMSGIVD  193 (519)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~  193 (519)
                      ....+..........|.+ ++|+..+.+++.+          .|+...+++..+.++...|  ++++++..++.++... 
T Consensus        31 ~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~----------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-   99 (306)
T 3dra_A           31 DYKQIMGLLLALMKAEEYSERALHITELGINE----------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-   99 (306)
T ss_dssp             HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-
Confidence            445566777777778887 5899999999999          9999999999999999999  9999999999998765 


Q ss_pred             hcCCCchHHHHHHHHHHHHH----Hcc---ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHH--HH
Q 010063          194 SLKDDEPLLDAILLHMGSMY----STL---ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAK--KA  264 (519)
Q Consensus       194 ~~~~~~~~~~~~~~~l~~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A  264 (519)
                            |....+++..+.++    ...   +++++++.++.++++.        +|....++...+.+....|.++  ++
T Consensus       100 ------Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--------~pkny~aW~~R~~vl~~l~~~~~~~E  165 (306)
T 3dra_A          100 ------EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--------DPKNHHVWSYRKWLVDTFDLHNDAKE  165 (306)
T ss_dssp             ------TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTCHHH
T ss_pred             ------cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcccChHHH
Confidence                  44445677777777    555   7899999999999875        3445778899999999999998  99


Q ss_pred             HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 010063          265 VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK------AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA  338 (519)
Q Consensus       265 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  338 (519)
                      ++++.++++.        ++....+++..+.+....|+      ++++++++.+++..        +|....+++.++.+
T Consensus       166 L~~~~~~i~~--------d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~l  229 (306)
T 3dra_A          166 LSFVDKVIDT--------DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGI  229 (306)
T ss_dssp             HHHHHHHHHH--------CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHH
Confidence            9999999986        67778899999999999887      99999999999985        56777789999999


Q ss_pred             HHHCCCHHH-HHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 010063          339 KCANGNAEE-AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH  417 (519)
Q Consensus       339 ~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  417 (519)
                      +...|+..+ ...++.+++...       ...+....++..++.++.+.|+.++|+++++.+.+.       -+|.....
T Consensus       230 l~~~~~~~~~~~~~~~~~~~~~-------~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-------~Dpir~~y  295 (306)
T 3dra_A          230 HERFDRSITQLEEFSLQFVDLE-------KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK-------YNPIRSNF  295 (306)
T ss_dssp             HHHTTCCGGGGHHHHHTTEEGG-------GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------TCGGGHHH
T ss_pred             HHhcCCChHHHHHHHHHHHhcc-------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-------cChHHHHH
Confidence            999998555 444555554431       011222446688999999999999999999997652       24555555


Q ss_pred             HHHHH
Q 010063          418 LLNLA  422 (519)
Q Consensus       418 ~~~la  422 (519)
                      +...+
T Consensus       296 W~~~~  300 (306)
T 3dra_A          296 WDYQI  300 (306)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.55  E-value=6e-15  Score=136.24  Aligned_cols=273  Identities=12%  Similarity=-0.007  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCc
Q 010063          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (519)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (519)
                      .+...|..+...|++++|++.|.++               ..+..+..++..+...|++++|+.+++.+.+..       
T Consensus        34 vWs~La~A~l~~g~~~eAIdsfika---------------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~-------   91 (449)
T 1b89_A           34 VWSQLAKAQLQKGMVKEAIDSYIKA---------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-------   91 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHcC---------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-------
Confidence            4667889999999999999999753               234477888889999999999999998877642       


Q ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (519)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (519)
                      +. ..+...++.+|.+.|++.++..+++.          ++    ..++..+|..+...|+|++|..+|.++        
T Consensus        92 ~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~----------pn----~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------  148 (449)
T 1b89_A           92 RE-SYVETELIFALAKTNRLAELEEFING----------PN----NAHIQQVGDRCYDEKMYDAAKLLYNNV--------  148 (449)
T ss_dssp             ------------------CHHHHTTTTTC----------C--------------------CTTTHHHHHHHT--------
T ss_pred             cc-chhHHHHHHHHHHhCCHHHHHHHHcC----------Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence            11 23467789999999999998877742          22    238999999999999999999999976        


Q ss_pred             CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010063          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (519)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (519)
                              ..+..+|.++..+|++++|++.++++.          +   ..+|..+..++...|+++.|..+....    
T Consensus       149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA~----------~---~~~Wk~v~~aCv~~~ef~lA~~~~l~L----  203 (449)
T 1b89_A          149 --------SNFGRLASTLVHLGEYQAAVDGARKAN----------S---TRTWKEVCFACVDGKEFRLAQMCGLHI----  203 (449)
T ss_dssp             --------TCHHHHHHHHHTTTCHHHHHHHHHHHT----------C---HHHHHHHHHHHHHTTCHHHHHHTTTTT----
T ss_pred             --------hhHHHHHHHHHHhccHHHHHHHHHHcC----------C---chhHHHHHHHHHHcCcHHHHHHHHHHH----
Confidence                    356789999999999999999999982          1   246788889999999999996655541    


Q ss_pred             HhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh--ccCHHHHHHH
Q 010063          360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR--SKNFVEAERL  437 (519)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~  437 (519)
                            . .++..   ...++..|.+.|++++|+.++++++.+        .+.....+..+|.+|.+  .++..++++.
T Consensus       204 ------~-~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~l--------e~ah~~~ftel~il~~ky~p~k~~ehl~~  265 (449)
T 1b89_A          204 ------V-VHADE---LEELINYYQDRGYFEELITMLEAALGL--------ERAHMGMFTELAILYSKFKPQKMREHLEL  265 (449)
T ss_dssp             ------T-TCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTS--------TTCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ------H-hCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCC--------cHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence                  1 12222   245889999999999999999999864        23335567777777764  4667777777


Q ss_pred             HHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010063          438 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  483 (519)
Q Consensus       438 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (519)
                      |...+.+-+-+.   .-.....|..+..+|...++++.|...+-+.
T Consensus       266 ~~~~ini~k~~~---~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h  308 (449)
T 1b89_A          266 FWSRVNIPKVLR---AAEQAHLWAELVFLYDKYEEYDNAIITMMNH  308 (449)
T ss_dssp             HSTTSCHHHHHH---HHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHhcCcHHHH---HHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence            765554322100   0023345778899999999999998765443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.54  E-value=1.8e-13  Score=123.47  Aligned_cols=169  Identities=15%  Similarity=0.033  Sum_probs=144.1

Q ss_pred             hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010063          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (519)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (519)
                      |.....+..+|..+...|++++|+..|+++++.        +|....++..+|.++...|++++|+..+++++..     
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-----  180 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-----  180 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----
Confidence            345677889999999999999999999999985        4666678999999999999999999999998765     


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (519)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (519)
                        .++.   .......+..+...++.++|+..+++++..        .|....++.++|.++...|++++|+..|++++.
T Consensus       181 --~p~~---~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~  247 (287)
T 3qou_A          181 --DQDT---RYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLR  247 (287)
T ss_dssp             --GCSH---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --hcch---HHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence              2322   234466777788899999999999999885        466678899999999999999999999999998


Q ss_pred             HHHHhcCCCCcch--hHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063          444 IMTKTVGPDDQSI--SFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (519)
Q Consensus       444 ~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (519)
                      .        +|..  ..++.+++.++...|+.++|...|++++..
T Consensus       248 ~--------~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          248 X--------DLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             H--------CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             c--------ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            4        3444  678899999999999999999999999864

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.54  E-value=3.6e-13  Score=115.55  Aligned_cols=177  Identities=16%  Similarity=0.135  Sum_probs=143.4

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 010063          262 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA  341 (519)
Q Consensus       262 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  341 (519)
                      .+|+.+|+++.+.          ..+.+++.+|.+|...+++++|+.+|+++.+.          ....++.++|.+|..
T Consensus         3 ~eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------g~~~a~~~lg~~y~~   62 (212)
T 3rjv_A            3 TEPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------GDGDALALLAQLKIR   62 (212)
T ss_dssp             -CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHTTS
T ss_pred             chHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHc
Confidence            3567788887753          23678999999999999999999999999873          234578899999998


Q ss_pred             CC----CHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhhCCCChh
Q 010063          342 NG----NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPS  413 (519)
Q Consensus       342 ~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~  413 (519)
                       +    ++++|+.+|+++.+.         .+   ..++.+||.+|..    .+++++|+.+|+++.+..      ....
T Consensus        63 -~g~~~~~~~A~~~~~~A~~~---------g~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~------~~~~  123 (212)
T 3rjv_A           63 -NPQQADYPQARQLAEKAVEA---------GS---KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS------ESDA  123 (212)
T ss_dssp             -STTSCCHHHHHHHHHHHHHT---------TC---HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST------TSHH
T ss_pred             -CCCCCCHHHHHHHHHHHHHC---------CC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC------CCcc
Confidence             7    999999999999653         12   3466899999998    889999999999987631      1114


Q ss_pred             HHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhc-C-----ChHHHHHHHHHH
Q 010063          414 FVTHLLNLAASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL-N-----RDKEAEKLVLEA  483 (519)
Q Consensus       414 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~a  483 (519)
                      ...++.+||.+|..    .+++++|+.+|+++.+.         +....++.+||.+|... |     ++++|+.+|+++
T Consensus       124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A  194 (212)
T 3rjv_A          124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS  194 (212)
T ss_dssp             HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            57889999999999    88999999999999872         22234789999999864 3     899999999999


Q ss_pred             HHH
Q 010063          484 LYI  486 (519)
Q Consensus       484 ~~~  486 (519)
                      .+.
T Consensus       195 ~~~  197 (212)
T 3rjv_A          195 CLE  197 (212)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            875

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.53  E-value=3.1e-13  Score=115.97  Aligned_cols=177  Identities=15%  Similarity=0.112  Sum_probs=143.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHH
Q 010063          135 NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYS  214 (519)
Q Consensus       135 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  214 (519)
                      .+|+.+|+++.+.            ..+.+++.+|.+|...+++++|+.+|+++.+..         ...+++.+|.+|.
T Consensus         3 ~eA~~~~~~aa~~------------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---------~~~a~~~lg~~y~   61 (212)
T 3rjv_A            3 TEPGSQYQQQAEA------------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---------DGDALALLAQLKI   61 (212)
T ss_dssp             -CTTHHHHHHHHT------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHC------------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHH
Confidence            3577777777653            346789999999999999999999999987531         2346889999999


Q ss_pred             ccc----cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 010063          215 TLE----NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVITILELNRGTESADL  286 (519)
Q Consensus       215 ~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~  286 (519)
                      . +    ++++|+.+|+++.+.       .   ...+++++|.+|..    .+++++|+.+|+++.+.-      .....
T Consensus        62 ~-~g~~~~~~~A~~~~~~A~~~-------g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~------~~~~~  124 (212)
T 3rjv_A           62 R-NPQQADYPQARQLAEKAVEA-------G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS------ESDAA  124 (212)
T ss_dssp             S-STTSCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST------TSHHH
T ss_pred             c-CCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC------CCcch
Confidence            8 7    999999999999652       2   25678899999998    899999999999998641      11145


Q ss_pred             HHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC-C-----CHHHHHHHHHHHH
Q 010063          287 VLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN-G-----NAEEAVELYKKAL  356 (519)
Q Consensus       287 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al  356 (519)
                      ..++++||.+|..    .+++++|+.+|+++.+.         +....++.+||.+|... |     ++++|+.+|+++.
T Consensus       125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~  195 (212)
T 3rjv_A          125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC  195 (212)
T ss_dssp             HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence            7899999999999    88999999999999873         12233788999999864 3     8999999999998


Q ss_pred             HH
Q 010063          357 RV  358 (519)
Q Consensus       357 ~~  358 (519)
                      +.
T Consensus       196 ~~  197 (212)
T 3rjv_A          196 LE  197 (212)
T ss_dssp             HH
T ss_pred             Hc
Confidence            86

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.52  E-value=3.3e-13  Score=121.74  Aligned_cols=165  Identities=12%  Similarity=0.035  Sum_probs=142.7

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC
Q 010063          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (519)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (519)
                      ..++..+..+...|++++|+..|+++++.          .|..+.++..+|.++...|++++|+..++++....      
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~----------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~------  181 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQL----------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD------  181 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG------
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHh----------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh------
Confidence            44778899999999999999999999998          78888999999999999999999999999876553      


Q ss_pred             chHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010063          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (519)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (519)
                       |.........+..+...++.++|+..+++++..        +|....++.++|.++...|++++|+..|+++++.    
T Consensus       182 -p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~----  248 (287)
T 3qou_A          182 -QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRX----  248 (287)
T ss_dssp             -CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             -cchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----
Confidence             223344566777788899999999999999886        2444678899999999999999999999999987    


Q ss_pred             cCCCChhh--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063          279 RGTESADL--VLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (519)
Q Consensus       279 ~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (519)
                          +|..  ..++.+++.++...|+.++|...|++++..
T Consensus       249 ----~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          249 ----DLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             ----CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ----ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence                3444  788999999999999999999999999864

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.52  E-value=1.1e-13  Score=115.10  Aligned_cols=167  Identities=19%  Similarity=0.068  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCC
Q 010063          287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS  366 (519)
Q Consensus       287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  366 (519)
                      ...+..+|..+...|++++|+..++++++.        +|....++..+|.++...|++++|+..+++++..       .
T Consensus         6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-------~   70 (176)
T 2r5s_A            6 DEQLLKQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQELLATIPLE-------Y   70 (176)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-------G
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-------c
Confidence            345678899999999999999999999985        3666778999999999999999999999998765       2


Q ss_pred             CCchHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010063          367 LDDSIMENMRIDLAELL-HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (519)
Q Consensus       367 ~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (519)
                      | ++..   ...++.+. ...++..+|+..++++++.        .|....++..+|.++...|++++|+..|++++.. 
T Consensus        71 p-~~~~---~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-  137 (176)
T 2r5s_A           71 Q-DNSY---KSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKV-  137 (176)
T ss_dssp             C-CHHH---HHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred             C-ChHH---HHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-
Confidence            3 3322   22233332 2334555689999998874        4555678999999999999999999999999873 


Q ss_pred             HHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063          446 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (519)
Q Consensus       446 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (519)
                          .|+ +....++..++.++..+|+.++|...|++++..
T Consensus       138 ----~p~-~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~  173 (176)
T 2r5s_A          138 ----NLG-AQDGEVKKTFMDILSALGQGNAIASKYRRQLYS  173 (176)
T ss_dssp             ----CTT-TTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             ----Ccc-cChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence                121 122457889999999999999999999999864

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.51  E-value=1.3e-13  Score=114.71  Aligned_cols=162  Identities=11%  Similarity=0.090  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      ++..+..+...|++++|+..++++++.          .|..+.++..+|.++...|++++|+..+++++...    + ++
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~----------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~----p-~~   73 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDE----------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY----Q-DN   73 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHH----------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG----C-CH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH----------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc----C-Ch
Confidence            667888999999999999999999988          78888999999999999999999999999876553    2 33


Q ss_pred             HHHHHHHHHHHHH-HccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063          201 LLDAILLHMGSMY-STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (519)
Q Consensus       201 ~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (519)
                      ..   ...++.+. ...++..+|+..++++++.        +|....++..+|.++...|++++|+..|+++++.     
T Consensus        74 ~~---~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----  137 (176)
T 2r5s_A           74 SY---KSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKV-----  137 (176)
T ss_dssp             HH---HHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----
T ss_pred             HH---HHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----
Confidence            32   22333332 2334455689999999876        2334678899999999999999999999999876     


Q ss_pred             CCCChh--hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063          280 GTESAD--LVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (519)
Q Consensus       280 ~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (519)
                         .|.  ...++..+|.++...|+.++|+..|++++..
T Consensus       138 ---~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~  173 (176)
T 2r5s_A          138 ---NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS  173 (176)
T ss_dssp             ---CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             ---CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence               332  3568899999999999999999999998864

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.51  E-value=1.1e-12  Score=114.54  Aligned_cols=211  Identities=14%  Similarity=0.009  Sum_probs=167.8

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH-------HHHHHhcCChHHHHHHHHH
Q 010063          115 ERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDII-------ALGYVYIGDLKFVQSLLDM  187 (519)
Q Consensus       115 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~  187 (519)
                      .+.+..++..+.-+ ..+++..|.+.|.++++.          .|..+++|..+       +.++...++..+++..+.+
T Consensus         4 ~~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~----------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~   72 (282)
T 4f3v_A            4 TDRLASLFESAVSM-LPMSEARSLDLFTEITNY----------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSG   72 (282)
T ss_dssp             HHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHH
T ss_pred             hHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHh----------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHH
Confidence            34556677777666 689999999999999999          99999999999       8899999999999888888


Q ss_pred             HHhhhhhcCCCc--------------hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010063          188 MSGIVDSLKDDE--------------PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK  253 (519)
Q Consensus       188 ~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  253 (519)
                      .+.+....-...              .....+...++.++...|++++|...|...+.        ..|... ..+.+|.
T Consensus        73 ~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--------~~p~~~-~~~~~a~  143 (282)
T 4f3v_A           73 SVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--------AGSEHL-VAWMKAV  143 (282)
T ss_dssp             TTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--------TTCHHH-HHHHHHH
T ss_pred             HhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------cCCchH-HHHHHHH
Confidence            777432210000              01234566788999999999999999987654        234445 8889999


Q ss_pred             HHhhcCCHHHHHHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHH
Q 010063          254 VLGSIGRAKKAVEIYHRVITILELNRGTESAD-LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMA  331 (519)
Q Consensus       254 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~  331 (519)
                      ++...+++++|+.+++++...       .++. ...+++++|.++..+|++++|+.+|++++.      ++..|. ...+
T Consensus       144 l~~~~~r~~dA~~~l~~a~~~-------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da  210 (282)
T 4f3v_A          144 VYGAAERWTDVIDQVKSAGKW-------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAI  210 (282)
T ss_dssp             HHHHTTCHHHHHHHHTTGGGC-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHH
T ss_pred             HHHHcCCHHHHHHHHHHhhcc-------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHH
Confidence            999999999999999866432       1232 245889999999999999999999999974      233254 6678


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          332 MCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       332 ~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      ..++|.++..+|+.++|...|++++..
T Consensus       211 ~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          211 AWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999987

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.51  E-value=1e-13  Score=120.98  Aligned_cols=207  Identities=12%  Similarity=-0.018  Sum_probs=163.7

Q ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-------HHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010063          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGM-------AKVLGSIGRAKKAVEIYHRVITILELN  278 (519)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~~~~  278 (519)
                      ++..|..+ ..+++..|...|.+++.+        +|..+.++..+       +.++...++..+++..+++++.+....
T Consensus        10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~--------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~   80 (282)
T 4f3v_A           10 LFESAVSM-LPMSEARSLDLFTEITNY--------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMST   80 (282)
T ss_dssp             HHHHHHHH-TTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGG
T ss_pred             HHHHHhcc-cCCCHHHHHHHHHHHHHh--------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhh
Confidence            55566665 689999999999999987        46668889888       888999999999999999888764333


Q ss_pred             cCCCCh-------------hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH
Q 010063          279 RGTESA-------------DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA  345 (519)
Q Consensus       279 ~~~~~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  345 (519)
                      .+....             ........++.++...|++++|.+.|...+.        ..|... ..+.+|.++...|++
T Consensus        81 l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--------~~p~~~-~~~~~a~l~~~~~r~  151 (282)
T 4f3v_A           81 LNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--------AGSEHL-VAWMKAVVYGAAERW  151 (282)
T ss_dssp             GCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--------TTCHHH-HHHHHHHHHHHTTCH
T ss_pred             hhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------cCCchH-HHHHHHHHHHHcCCH
Confidence            221111             1134556688999999999999999988765        346666 889999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHH
Q 010063          346 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAAS  424 (519)
Q Consensus       346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~  424 (519)
                      ++|+.+++++...        +++.....+++++|.++...|++++|+..|++++.      ++..|. ...+.+.+|.+
T Consensus       152 ~dA~~~l~~a~~~--------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~gla  217 (282)
T 4f3v_A          152 TDVIDQVKSAGKW--------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLAMA  217 (282)
T ss_dssp             HHHHHHHTTGGGC--------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcc--------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHHHH
Confidence            9999999865432        22222345789999999999999999999999873      222244 67789999999


Q ss_pred             HHhccCHHHHHHHHHHHHHH
Q 010063          425 YSRSKNFVEAERLLRICLDI  444 (519)
Q Consensus       425 ~~~~g~~~~A~~~~~~al~~  444 (519)
                      +..+|+.++|...|++++..
T Consensus       218 L~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          218 RRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhc
Confidence            99999999999999999984

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.50  E-value=9e-12  Score=111.60  Aligned_cols=239  Identities=9%  Similarity=-0.047  Sum_probs=188.2

Q ss_pred             HhcCCh-HHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccc--cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010063          173 VYIGDL-KFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE--NYEKSMLVYQRVINVLESRYGKTSILLVTSLL  249 (519)
Q Consensus       173 ~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  249 (519)
                      ...|.+ ++|+..+.+++.+.       |....+++..+.++...|  ++++++.++.+++..        +|....+++
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~n-------P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW~  107 (306)
T 3dra_A           43 MKAEEYSERALHITELGINEL-------ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQIWN  107 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHC-------cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHHHH
Confidence            344554 68999999999886       666778999999999999  999999999999876        244456677


Q ss_pred             HHHHHH----hhc---CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHh
Q 010063          250 GMAKVL----GSI---GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV--DAESVFSRILKIYTKV  320 (519)
Q Consensus       250 ~la~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~  320 (519)
                      ..+.++    ...   +++++++..+.++++.        +|....+++..+.+....|.++  +++.++.++++.    
T Consensus       108 ~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~----  175 (306)
T 3dra_A          108 YRQLIIGQIMELNNNDFDPYREFDILEAMLSS--------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT----  175 (306)
T ss_dssp             HHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh----
Confidence            777777    666   7899999999999987        6777899999999999999998  999999999985    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHH-HH
Q 010063          321 YGENDGRVGMAMCSLAHAKCANGN------AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQE-GR  393 (519)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~  393 (519)
                          +|....++...+.+....|+      ++++++++++++..       .+.+   ..+++.++.++...|+..+ ..
T Consensus       176 ----d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~-------~p~n---~SaW~y~~~ll~~~~~~~~~~~  241 (306)
T 3dra_A          176 ----DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK-------CPQN---PSTWNYLLGIHERFDRSITQLE  241 (306)
T ss_dssp             ----CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH-------CSSC---HHHHHHHHHHHHHTTCCGGGGH
T ss_pred             ----CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh-------CCCC---ccHHHHHHHHHHhcCCChHHHH
Confidence                56767799999999999887      99999999999987       3333   4566889999999998655 44


Q ss_pred             HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 010063          394 ELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG  464 (519)
Q Consensus       394 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  464 (519)
                      .++++++.+.     ...+....++..++.+|.+.|+.++|+++|+.+.+       .-+|.....+...+
T Consensus       242 ~~~~~~~~~~-----~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~-------~~Dpir~~yW~~~~  300 (306)
T 3dra_A          242 EFSLQFVDLE-----KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS-------KYNPIRSNFWDYQI  300 (306)
T ss_dssp             HHHHTTEEGG-----GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------TTCGGGHHHHHHHH
T ss_pred             HHHHHHHhcc-----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-------ccChHHHHHHHHHH
Confidence            4555554421     11344556888999999999999999999999775       22455555444433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.50  E-value=1.4e-12  Score=101.48  Aligned_cols=108  Identities=13%  Similarity=0.101  Sum_probs=96.8

Q ss_pred             hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010063          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (519)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (519)
                      ++.+.++.++|..+...|++++|+.+|++++++        +|....++.++|.+|..+|++++|+..+++++++.+.. 
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~-   75 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET-   75 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence            455778899999999999999999999999986        46667789999999999999999999999999997763 


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (519)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (519)
                        .......+.++.++|.++...|++++|++.|++++..
T Consensus        76 --~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           76 --RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             --TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence              4556677889999999999999999999999999875

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.50  E-value=1.6e-12  Score=101.17  Aligned_cols=108  Identities=11%  Similarity=0.103  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (519)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (519)
                      ++.+.++.++|..++..|++++|+.+|++++++        .|....++.++|.+|..+|++++|+..+++++++.... 
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~-   75 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET-   75 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence            455778899999999999999999999999997        56678899999999999999999999999999987654 


Q ss_pred             CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      ....+..+.++.++|.++...|++++|+++|++++..
T Consensus        76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            2234557789999999999999999999999999986

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.49  E-value=4.1e-13  Score=134.00  Aligned_cols=153  Identities=11%  Similarity=0.022  Sum_probs=120.0

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHH
Q 010063          131 MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMG  210 (519)
Q Consensus       131 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  210 (519)
                      .|++++|+..++++++.          .|..+.++..+|.++...|++++|+..++++++..       |....++..+|
T Consensus         2 ~g~~~~A~~~~~~al~~----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg   64 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRH----------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-------PGHPEAVARLG   64 (568)
T ss_dssp             -----------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-------TTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHH
Confidence            47899999999999887          67778899999999999999999999999998764       44456789999


Q ss_pred             HHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 010063          211 SMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL  290 (519)
Q Consensus       211 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  290 (519)
                      .++...|++++|+.+++++++..        |....++.++|.++...|++++|+..++++++.        .|....++
T Consensus        65 ~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~  128 (568)
T 2vsy_A           65 RVRWTQQRHAEAAVLLQQASDAA--------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYIT  128 (568)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHH
Confidence            99999999999999999999862        333678899999999999999999999999987        45567889


Q ss_pred             HHHHHHHHhC---CCHHHHHHHHHHHHHH
Q 010063          291 FSLGSLFIKE---GKAVDAESVFSRILKI  316 (519)
Q Consensus       291 ~~la~~~~~~---g~~~~A~~~~~~al~~  316 (519)
                      .++|.++...   |++++|...++++++.
T Consensus       129 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A          129 AQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            9999999999   9999999999999986

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.48  E-value=1.9e-12  Score=103.60  Aligned_cols=102  Identities=9%  Similarity=0.069  Sum_probs=94.4

Q ss_pred             CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (519)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (519)
                      +|....+++.+|.++...|++++|+..|++++.+        .|....++.++|.++...|++++|+..|++++.+    
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l----   99 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL----   99 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence            5778889999999999999999999999999997        6777889999999999999999999999999997    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                          .|....++.++|.+|...|++++|+..|++++++
T Consensus       100 ----~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          100 ----GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             ----SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                3555568999999999999999999999999998

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.48  E-value=8.8e-13  Score=131.57  Aligned_cols=153  Identities=12%  Similarity=0.093  Sum_probs=118.7

Q ss_pred             cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 010063          258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH  337 (519)
Q Consensus       258 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  337 (519)
                      .|++++|+..++++++.        .|....++..+|.++...|++++|+..+++++++        .|....++.++|.
T Consensus         2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~   65 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGR   65 (568)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence            47899999999999876        4566789999999999999999999999999984        4566778999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 010063          338 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH  417 (519)
Q Consensus       338 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  417 (519)
                      ++...|++++|+.+++++++.       .++.   ..++.++|.++...|++++|++.+++++++        .|....+
T Consensus        66 ~~~~~g~~~~A~~~~~~al~~-------~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~  127 (568)
T 2vsy_A           66 VRWTQQRHAEAAVLLQQASDA-------APEH---PGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYI  127 (568)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhc-------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHH
Confidence            999999999999999999987       2333   456789999999999999999999999986        3444578


Q ss_pred             HHHHHHHHHhc---cCHHHHHHHHHHHHHH
Q 010063          418 LLNLAASYSRS---KNFVEAERLLRICLDI  444 (519)
Q Consensus       418 ~~~la~~~~~~---g~~~~A~~~~~~al~~  444 (519)
                      +.++|.++...   |++++|...++++++.
T Consensus       128 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A          128 TAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            89999999999   9999999999999984

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.45  E-value=4e-12  Score=101.68  Aligned_cols=104  Identities=11%  Similarity=0.182  Sum_probs=94.4

Q ss_pred             CCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010063          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (519)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (519)
                      .-+|....+++.+|.++...|++++|+..|++++.+        +|....++.++|.++...|++++|+..|++++++  
T Consensus        30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--   99 (151)
T 3gyz_A           30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--   99 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--
Confidence            445888888999999999999999999999999987        2444678999999999999999999999999998  


Q ss_pred             HhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (519)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (519)
                            .|....+++++|.+|..+|++++|+..|++++++
T Consensus       100 ------~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          100 ------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             ------SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                  5666789999999999999999999999999997

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.44  E-value=4.6e-13  Score=123.60  Aligned_cols=164  Identities=16%  Similarity=0.171  Sum_probs=133.5

Q ss_pred             hcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCC-------CCHHHHH
Q 010063          174 YIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK-------TSILLVT  246 (519)
Q Consensus       174 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~  246 (519)
                      .++++++|+..++++....       |..+.++..+|.++...|++++|+..|++++.+.......       ..+....
T Consensus       125 ~L~~~~~A~~~~~~a~~~~-------p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~  197 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEK-------LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA  197 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHH-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence            4566777776666655433       7777889999999999999999999999999875321000       0123467


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  326 (519)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  326 (519)
                      ++.++|.+|...|++++|+..+++++++        .|....+++++|.+|...|++++|+..|++++++        .|
T Consensus       198 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P  261 (336)
T 1p5q_A          198 SHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YP  261 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CC
Confidence            8999999999999999999999999997        5667889999999999999999999999999986        35


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHH
Q 010063          327 RVGMAMCSLAHAKCANGNAEEA-VELYKKALRVIK  360 (519)
Q Consensus       327 ~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~  360 (519)
                      ....++.+++.++...|++++| ...|.+++....
T Consensus       262 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  296 (336)
T 1p5q_A          262 NNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA  296 (336)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5566889999999999999999 557777766544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.44  E-value=3.2e-13  Score=124.70  Aligned_cols=161  Identities=10%  Similarity=0.077  Sum_probs=134.5

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC--------CchHH
Q 010063          131 MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD--------DEPLL  202 (519)
Q Consensus       131 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------~~~~~  202 (519)
                      .+++++|+..++++++.          .+..+.++..+|.++...|++++|+..|++++.+......        ..+..
T Consensus       126 L~~~~~A~~~~~~a~~~----------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~  195 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEE----------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALR  195 (336)
T ss_dssp             EEEEECCCCGGGCCHHH----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHH----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHH
Confidence            45677788888777766          6778899999999999999999999999999988633210        01333


Q ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (519)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (519)
                      ..++.++|.++...|++++|+..+++++++.        |....+++++|.+|...|++++|+..|++++++        
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------  259 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELD--------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------  259 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------
Confidence            5779999999999999999999999999872        334678999999999999999999999999998        


Q ss_pred             ChhhHHHHHHHHHHHHhCCCHHHH-HHHHHHHHHHH
Q 010063          283 SADLVLPLFSLGSLFIKEGKAVDA-ESVFSRILKIY  317 (519)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~  317 (519)
                      .|....++..++.++...|++++| ...|++++...
T Consensus       260 ~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  295 (336)
T 1p5q_A          260 YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL  295 (336)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456678999999999999999999 45777776654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.40  E-value=1.9e-11  Score=96.21  Aligned_cols=130  Identities=22%  Similarity=0.413  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA  284 (519)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  284 (519)
                      +++.+|.++...|++++|+.++++++...        |....++..+|.++...|++++|..++++++..        .|
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~   66 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DP   66 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------CC
Confidence            57889999999999999999999998752        222567788999999999999999999999876        34


Q ss_pred             hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      ....++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|..++++++..
T Consensus        67 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            45678889999999999999999999999885        2334557888999999999999999999999876

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.40  E-value=4.3e-12  Score=101.70  Aligned_cols=103  Identities=17%  Similarity=-0.001  Sum_probs=93.4

Q ss_pred             CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (519)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (519)
                      +|....+++.+|.++...|++++|+..|++++..        .|....++.++|.++...|++++|+..|++++.+    
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----   84 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM----   84 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence            4777888999999999999999999999999987        5667888999999999999999999999999986    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010063          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (519)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (519)
                          .|....++.++|.++...|++++|+..|++++++.
T Consensus        85 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A           85 ----DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             ----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence                34555678999999999999999999999999985

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.40  E-value=2.1e-11  Score=95.97  Aligned_cols=131  Identities=21%  Similarity=0.355  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  325 (519)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  325 (519)
                      .++..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|..++++++..        .
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~   65 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------D   65 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------C
Confidence            35778899999999999999999999876        3445678889999999999999999999999875        2


Q ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (519)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (519)
                      |....++..+|.++...|++++|+.++++++..       .+..   ..++..+|.++...|++++|...+++++..
T Consensus        66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------DPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------CCCC---hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            344557889999999999999999999999986       2333   345678999999999999999999998864

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.40  E-value=3.9e-11  Score=98.41  Aligned_cols=140  Identities=12%  Similarity=0.042  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC
Q 010063          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (519)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (519)
                      ..+..+..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|+.++++++..      
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------   76 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------   76 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence            45677889999999999999999999999987        4556788999999999999999999999999986      


Q ss_pred             CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063          323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (519)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (519)
                        .|....++..+|.++...|++++|+.++++++..       .+.+... .....++..+...|++++|+..++++..+
T Consensus        77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------~p~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-------KPHDKDA-KMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-------CCCCHHH-HHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence              3455668899999999999999999999999987       3334332 23355666688999999999999998887


Q ss_pred             HHHh
Q 010063          403 TEKY  406 (519)
Q Consensus       403 ~~~~  406 (519)
                      ....
T Consensus       147 ~~~~  150 (166)
T 1a17_A          147 VDSL  150 (166)
T ss_dssp             HHHC
T ss_pred             hccc
Confidence            6553

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.40  E-value=2.9e-10  Score=102.33  Aligned_cols=235  Identities=9%  Similarity=-0.006  Sum_probs=177.5

Q ss_pred             HHHHHHHHHHHHHHcCChh-HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCC----------hHHHHHHH
Q 010063          117 QLLELFNEVKSMIMMGNKN-DAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGD----------LKFVQSLL  185 (519)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~  185 (519)
                      ....+...+......|+++ +|+.++.+++..          .|....+++..+.+....|.          +++++.++
T Consensus        28 ~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~----------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~   97 (331)
T 3dss_A           28 LYQSATQAVFQKRQAGELDESVLELTSQILGA----------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFL   97 (331)
T ss_dssp             HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT----------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHH
Confidence            3444555666667888887 789999999988          88888999999998887765          56777777


Q ss_pred             HHHHhhhhhcCCCchHHHHHHHHHHHHHHcccc--HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCC-HH
Q 010063          186 DMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN--YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR-AK  262 (519)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~  262 (519)
                      +.++...       |....+|+..+.++...|+  +++++.++.++++.        +|....++...+.+....|. ++
T Consensus        98 ~~~L~~~-------PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~vl~~l~~~~~  162 (331)
T 3dss_A           98 ESCLRVN-------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPA  162 (331)
T ss_dssp             HHHHHHC-------TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHhC-------CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCcCHH
Confidence            7776553       5556678899999988884  89999999999886        34447788889999999998 69


Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 010063          263 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE--------------GKAVDAESVFSRILKIYTKVYGENDGRV  328 (519)
Q Consensus       263 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~  328 (519)
                      ++++++.++++.        +|....+++..+.++...              +.++++++++.+++.+        +|..
T Consensus       163 eel~~~~~~I~~--------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--------~P~d  226 (331)
T 3dss_A          163 EELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPND  226 (331)
T ss_dssp             HHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--------STTC
T ss_pred             HHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--------CCCC
Confidence            999999999986        677788999999888876              4588999999999985        4666


Q ss_pred             HHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH---HHcCChHHHHH
Q 010063          329 GMAMCSLAHAKCAN-----------GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL---HIVGRGQEGRE  394 (519)
Q Consensus       329 ~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~  394 (519)
                      ..+++.+..++...           +.++++++.++++++.       .|+...   ++..++.+.   ...|..++...
T Consensus       227 ~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~-------~pd~~w---~l~~~~~~~~~~~~~~~~~~~~~  296 (331)
T 3dss_A          227 QSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL-------EPENKW---CLLTIILLMRALDPLLYEKETLQ  296 (331)
T ss_dssp             HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH-------CTTCHH---HHHHHHHHHHHHCTTTTHHHHHH
T ss_pred             HHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh-------Ccccch---HHHHHHHHHHhhcccccHHHHHH
Confidence            66776665555554           3577888888888877       455433   223333322   23567778888


Q ss_pred             HHHHHHHH
Q 010063          395 LLEECLLI  402 (519)
Q Consensus       395 ~~~~al~~  402 (519)
                      ++.+.+++
T Consensus       297 ~l~~l~~~  304 (331)
T 3dss_A          297 YFSTLKAV  304 (331)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88887765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.37  E-value=4.4e-12  Score=101.68  Aligned_cols=103  Identities=12%  Similarity=0.097  Sum_probs=91.6

Q ss_pred             ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (519)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (519)
                      .|....+++.+|.++...|++++|+..|++++...       |....+++.+|.++...|++++|+..|++++.+.    
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----   85 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-------HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD----   85 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----
Confidence            78899999999999999999999999999998775       4445568999999999999999999999999872    


Q ss_pred             CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010063          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (519)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (519)
                          |....+++++|.++...|++++|+..|++++++.
T Consensus        86 ----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A           86 ----IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             ----TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ----CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence                2335678899999999999999999999999884

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.36  E-value=3.8e-11  Score=98.47  Aligned_cols=139  Identities=12%  Similarity=0.053  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (519)
                      ..+..+..+|..+...|++++|+..+++++...        |....++..+|.++...|++++|+.+++++++.      
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------   76 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN--------PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------   76 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence            345668999999999999999999999999862        223678889999999999999999999999987      


Q ss_pred             CCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (519)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (519)
                        .|....++..+|.++...|++++|+.++++++++.     +.++. ......++..+...|++++|+..+.++..+..
T Consensus        77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----p~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  148 (166)
T 1a17_A           77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHDKD-AKMKYQECNKIVKQKAFERAIAGDEHKRSVVD  148 (166)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCHH-HHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence              45567889999999999999999999999999862     22222 22345566668889999999999999988876


Q ss_pred             h
Q 010063          361 D  361 (519)
Q Consensus       361 ~  361 (519)
                      .
T Consensus       149 ~  149 (166)
T 1a17_A          149 S  149 (166)
T ss_dssp             H
T ss_pred             c
Confidence            5

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.36  E-value=5.4e-11  Score=92.55  Aligned_cols=122  Identities=12%  Similarity=0.032  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (519)
                      ..+..+..+|..+...|++++|+..|++++...        |....++.++|.++...|++++|+..+++++++      
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------   67 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------   67 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence            345568999999999999999999999999862        333678999999999999999999999999997      


Q ss_pred             CCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 010063          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC  340 (519)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  340 (519)
                        .|....++..+|.++...|++++|+..+++++++.....  ..|....+...++.+..
T Consensus        68 --~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           68 --DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHH
T ss_pred             --CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHHH
Confidence              566688999999999999999999999999999864432  23555556666665543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.35  E-value=4.1e-11  Score=94.37  Aligned_cols=117  Identities=18%  Similarity=0.098  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC----CChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT----ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (519)
                      +..+.+.|..+...|+|++|+..|++++++.......    ..|....+|.++|.++..+|++++|+..++++++++.+.
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            5667889999999999999999999999986441110    012234599999999999999999999999999986655


Q ss_pred             cCCCChhHHHHH----HHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063          321 YGENDGRVGMAM----CSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (519)
Q Consensus       321 ~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (519)
                       ++-+|+...+|    +++|.++..+|++++|+..|++++++..+.
T Consensus        91 -~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           91 -GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             -CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             -ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence             34567888888    999999999999999999999999997763

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.35  E-value=4.3e-11  Score=93.08  Aligned_cols=102  Identities=15%  Similarity=-0.019  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCC
Q 010063          244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  323 (519)
Q Consensus       244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  323 (519)
                      .+..+..+|..+...|++++|+..|++++++        .|....++.++|.++...|++++|+..+++++++       
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------   67 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-------   67 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence            4667889999999999999999999999987        4666789999999999999999999999999986       


Q ss_pred             CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063          324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (519)
Q Consensus       324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (519)
                       +|....++.++|.++...|++++|+..+++++++...
T Consensus        68 -~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  104 (126)
T 3upv_A           68 -DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE  104 (126)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             -CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcc
Confidence             4555678999999999999999999999999998644

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.34  E-value=2.8e-12  Score=115.17  Aligned_cols=194  Identities=12%  Similarity=0.009  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (519)
                      +..+..+|..+...|++++|+..|+++++.        .|....++.++|.+|...|++++|+..+++++++        
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------   67 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------   67 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence            567888999999999999999999999987        5566889999999999999999999999999874        


Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010063          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (519)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (519)
                      +|....++.++|.++...|++++|+..+++++++......  .-.... ..    .....      ++......     .
T Consensus        68 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~--~~~~~~-~~----~~~~~------~~~~~~~~-----~  129 (281)
T 2c2l_A           68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL--NFGDDI-PS----ALRIA------KKKRWNSI-----E  129 (281)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--CCCSHH-HH----HHHHH------HHHHHHHH-----H
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchh--hHHHHH-HH----HHHHH------HHHHHHHH-----H
Confidence            5666778999999999999999999999999998765310  001111 11    11111      11111111     1


Q ss_pred             HhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhc-CChHHHHHHHHHH
Q 010063          405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL-NRDKEAEKLVLEA  483 (519)
Q Consensus       405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a  483 (519)
                      ....+..+..   ...++.++  .|++++|++.++++++.        .|........++.++... +.+++|...|.++
T Consensus       130 ~~~~~~~~~i---~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a  196 (281)
T 2c2l_A          130 ERRIHQESEL---HSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQV  196 (281)
T ss_dssp             HTCCCCCCHH---HHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHhhhHHH---HHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            1111233333   33344443  68999999999988872        344444555666666655 6788888888877


Q ss_pred             HH
Q 010063          484 LY  485 (519)
Q Consensus       484 ~~  485 (519)
                      .+
T Consensus       197 ~~  198 (281)
T 2c2l_A          197 DE  198 (281)
T ss_dssp             SC
T ss_pred             hc
Confidence            65

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.34  E-value=3.3e-11  Score=94.93  Aligned_cols=116  Identities=16%  Similarity=0.070  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC----CCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Q 010063          373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG----KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  448 (519)
Q Consensus       373 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (519)
                      +..+.++|..+...|++++|+..|++++.+......    ...|....+|.++|.++..+|++++|+..++++++++.+.
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            455688999999999999999999999998754110    0112345599999999999999999999999999986665


Q ss_pred             cCCCCcchhHHH----HHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010063          449 VGPDDQSISFPM----LHLGITLYHLNRDKEAEKLVLEALYIREI  489 (519)
Q Consensus       449 ~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~a~~~~~~  489 (519)
                       ++-+|+...++    +++|.++..+|++++|+..|++++++...
T Consensus        91 -~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~  134 (159)
T 2hr2_A           91 -GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  134 (159)
T ss_dssp             -CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             -ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence             35568888888    99999999999999999999999999854

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.34  E-value=2.4e-11  Score=104.32  Aligned_cols=139  Identities=14%  Similarity=0.115  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (519)
                      ...++.+|..+...|++++|+..|++++.          + ...++.++|.++...|++++|+.++++++.+        
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~----------~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------   66 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQD----------P-HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------   66 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSSS----------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHcC----------C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence            45577899999999999999999998841          1 3578999999999999999999999999986        


Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc------CCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010063          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY------MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  398 (519)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  398 (519)
                      .|....++.++|.++...|++++|+..++++++.......      .....+....++.++|.++...|++++|+..+++
T Consensus        67 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  146 (213)
T 1hh8_A           67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL  146 (213)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            3555678999999999999999999999999987432100      0002334457789999999999999999999999


Q ss_pred             HHHH
Q 010063          399 CLLI  402 (519)
Q Consensus       399 al~~  402 (519)
                      ++.+
T Consensus       147 al~~  150 (213)
T 1hh8_A          147 ATSM  150 (213)
T ss_dssp             HHTT
T ss_pred             HHHc
Confidence            9875

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.32  E-value=4.3e-11  Score=102.77  Aligned_cols=136  Identities=13%  Similarity=0.086  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (519)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (519)
                      ..++.+|..+...|++++|+..|++++.       +    ...++.++|.++...|++++|+..+++++++        .
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~   67 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQD-------P----HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------D   67 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence            3478899999999999999999998841       1    2468899999999999999999999999987        4


Q ss_pred             hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 010063          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY--------GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA  355 (519)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  355 (519)
                      |....++.++|.++...|++++|+..++++++......        ....|....++.++|.++...|++++|+..++++
T Consensus        68 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  147 (213)
T 1hh8_A           68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  147 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            56678999999999999999999999999998642210        0023456688999999999999999999999999


Q ss_pred             HHH
Q 010063          356 LRV  358 (519)
Q Consensus       356 l~~  358 (519)
                      ++.
T Consensus       148 l~~  150 (213)
T 1hh8_A          148 TSM  150 (213)
T ss_dssp             HTT
T ss_pred             HHc
Confidence            886

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.32  E-value=3.3e-12  Score=108.42  Aligned_cols=166  Identities=12%  Similarity=-0.001  Sum_probs=115.5

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCc
Q 010063          290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD  369 (519)
Q Consensus       290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  369 (519)
                      ....+......|++++|.+.+......        .+..+..+..+|..+...|++++|+.+|++++......    ++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~   74 (198)
T 2fbn_A            7 HHHHSSGRENLYFQGAKKSIYDYTDEE--------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT----EEW   74 (198)
T ss_dssp             ---------------CCCSGGGCCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC----TTC
T ss_pred             ccchhhhhhhhhhccccCchhhCCHHH--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc----ccc
Confidence            344566667778888888877765542        24566788999999999999999999999999874321    111


Q ss_pred             h----------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHH
Q 010063          370 S----------IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  439 (519)
Q Consensus       370 ~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  439 (519)
                      .          ....++.++|.++...|++++|+.++++++.+        .|....++..+|.+|...|++++|+.+|+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~  146 (198)
T 2fbn_A           75 DDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLY  146 (198)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            0          11367899999999999999999999999986        34456789999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHH-HHHHHH
Q 010063          440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE-KLVLEA  483 (519)
Q Consensus       440 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a  483 (519)
                      +++.+        .|....++..++.++...++..++. ..+.+.
T Consensus       147 ~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  183 (198)
T 2fbn_A          147 KAASL--------NPNNLDIRNSYELCVNKLKEARKKDKLTFGGM  183 (198)
T ss_dssp             HHHHH--------STTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred             HHHHH--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99985        3455677888999999888887776 334433

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.31  E-value=4.4e-12  Score=107.62  Aligned_cols=161  Identities=12%  Similarity=0.050  Sum_probs=114.4

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC-----
Q 010063          166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT-----  240 (519)
Q Consensus       166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----  240 (519)
                      ...+......|+++++.+.++.....       .+..+..+..+|..+...|++++|+..|++++.+........     
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~   80 (198)
T 2fbn_A            8 HHHSSGRENLYFQGAKKSIYDYTDEE-------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL   80 (198)
T ss_dssp             --------------CCCSGGGCCHHH-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH
T ss_pred             cchhhhhhhhhhccccCchhhCCHHH-------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHH
Confidence            34455666778888877766543322       255666788999999999999999999999988643210000     


Q ss_pred             ---CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063          241 ---SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (519)
Q Consensus       241 ---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (519)
                         ......++.++|.++...|++++|+.++++++++        .|....++..+|.++...|++++|+..|++++++ 
T Consensus        81 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-  151 (198)
T 2fbn_A           81 DKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-  151 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-
Confidence               0012478899999999999999999999999987        4566789999999999999999999999999986 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHH
Q 010063          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAV  349 (519)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  349 (519)
                             .|....++..++.++...++.+++.
T Consensus       152 -------~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          152 -------NPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             -------STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             -------CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence                   3455567888899888888777766

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.30  E-value=6.7e-11  Score=92.85  Aligned_cols=125  Identities=9%  Similarity=0.085  Sum_probs=106.6

Q ss_pred             CCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Q 010063          155 GNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE  234 (519)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  234 (519)
                      ....+.....+..+|.++...|++++|+..+++++...       |....++..+|.++...|++++|+.++++++... 
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-   80 (133)
T 2lni_A            9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-   80 (133)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-
T ss_pred             CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence            34567888999999999999999999999999998764       3335568999999999999999999999999862 


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCC
Q 010063          235 SRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK  302 (519)
Q Consensus       235 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  302 (519)
                             |....++..+|.++...|++++|+.+++++++.        .|....++..++.++...|+
T Consensus        81 -------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           81 -------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred             -------CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence                   223567889999999999999999999999987        45567788899999887764

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.28  E-value=1.8e-10  Score=89.89  Aligned_cols=124  Identities=19%  Similarity=0.165  Sum_probs=106.0

Q ss_pred             CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (519)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (519)
                      .+.....+..+|..+...|++++|+..+++++..        .|....++..+|.++...|++++|+.++++++..    
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----   75 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI----   75 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc----
Confidence            4566788999999999999999999999999987        3455788999999999999999999999999985    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChH
Q 010063          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ  390 (519)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  390 (519)
                          .|....++..+|.++...|++++|+.++++++..       .++.   ..++..++.++...|+++
T Consensus        76 ----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~p~~---~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A           76 ----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL-------DPDN---ETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTC---HHHHHHHHHHHHHHTTCC
T ss_pred             ----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------Cccc---hHHHHHHHHHHHHHhcCC
Confidence                3444568899999999999999999999999987       2333   345688999999888763

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.28  E-value=8.5e-11  Score=92.22  Aligned_cols=123  Identities=12%  Similarity=-0.020  Sum_probs=104.1

Q ss_pred             CCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 010063          240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  319 (519)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  319 (519)
                      ..+....++..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|+.+++++++.   
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---   79 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---   79 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---
Confidence            34567888999999999999999999999999875        4555788999999999999999999999999985   


Q ss_pred             hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCC
Q 010063          320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR  388 (519)
Q Consensus       320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  388 (519)
                           .|....++..+|.++...|++++|+.++++++...       +..   ..++..++.++..+|+
T Consensus        80 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------p~~---~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           80 -----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-------SSC---KEAADGYQRCMMAQYN  133 (133)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------GGG---THHHHHHHHHHHHHTC
T ss_pred             -----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-------CCc---hHHHHHHHHHHHHhcC
Confidence                 34556688999999999999999999999999872       222   3456788888887764

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.28  E-value=2.4e-10  Score=93.45  Aligned_cols=104  Identities=17%  Similarity=0.117  Sum_probs=92.4

Q ss_pred             CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010063          368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK  447 (519)
Q Consensus       368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  447 (519)
                      +.+.....+..+|.++...|++++|+..|++++.+        .|....++.++|.+|...|++++|+.+|++++.+   
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---   74 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV---   74 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence            34455678899999999999999999999999986        3445678999999999999999999999999985   


Q ss_pred             hcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          448 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       448 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                           +|....++..+|.+|..+|++++|+.+|++++++.
T Consensus        75 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           75 -----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence                 35567889999999999999999999999999976

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.27  E-value=2.6e-10  Score=90.74  Aligned_cols=104  Identities=14%  Similarity=0.019  Sum_probs=93.7

Q ss_pred             CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (519)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (519)
                      +|.....++.+|..+...|++++|+..|++++..        .|....++..+|.++...|++++|+..|++++.+    
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----   81 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM----   81 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence            4677888999999999999999999999999987        5667889999999999999999999999999986    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (519)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (519)
                          .|....++.++|.++...|++++|+..|++++++..
T Consensus        82 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  117 (142)
T 2xcb_A           82 ----DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA  117 (142)
T ss_dssp             ----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence                345556789999999999999999999999999864

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.27  E-value=2.8e-12  Score=124.13  Aligned_cols=181  Identities=15%  Similarity=0.143  Sum_probs=133.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (519)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (519)
                      +..+..+..+|.++...|++++|+..|++++++        .|....++.++|.+|..+|++++|+..+++++++     
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----   69 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-----   69 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence            344566778899999999999999999999997        5667899999999999999999999999999985     


Q ss_pred             CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH--HHHcCChHHHHHHHH--
Q 010063          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL--LHIVGRGQEGRELLE--  397 (519)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~--  397 (519)
                         +|....++.++|.+|..+|++++|+..+++++++       .++...   ++..++.+  +..+|++++|++.++  
T Consensus        70 ---~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-------~p~~~~---~~~~l~~~~~~~~~g~~~~A~~~~~~~  136 (477)
T 1wao_1           70 ---DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-------KPHDKD---AKMKYQECNKIVKQKAFERAIAGDEHK  136 (477)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------STTCTT---HHHHHHHHHHHHHHHHHCCC------C
T ss_pred             ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHH---HHHHHHHHHHHHHHHHHHHHhcccccc
Confidence               5666778999999999999999999999999987       233332   34566666  888999999999999  


Q ss_pred             ---------HHHHHHHHhhCCCChh---HHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHHHHh
Q 010063          398 ---------ECLLITEKYKGKEHPS---FVTHLLNLAASYSRSKNF--VEAERLLRICLDIMTKT  448 (519)
Q Consensus       398 ---------~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~  448 (519)
                               +++.+.....++..+.   ....+..+...+...+..  ..+..++.++.++..+.
T Consensus       137 ~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e  201 (477)
T 1wao_1          137 RSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKL  201 (477)
T ss_dssp             CSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTS
T ss_pred             chhHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccC
Confidence                     5555443333333332   223344455555555543  45556788887777653

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.27  E-value=1.2e-10  Score=95.11  Aligned_cols=109  Identities=17%  Similarity=0.119  Sum_probs=95.2

Q ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcC---CC-------CHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 010063          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG---KT-------SILLVTSLLGMAKVLGSIGRAKKAVEIYH  269 (519)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~  269 (519)
                      ...+..+...|..++..|++++|+..|.+++.+......   +.       .|....++.++|.+|...|++++|+..++
T Consensus         8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~   87 (162)
T 3rkv_A            8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS   87 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            345667899999999999999999999999998654321   11       35567889999999999999999999999


Q ss_pred             HHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063          270 RVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (519)
Q Consensus       270 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (519)
                      +++++        .|....+++.+|.++...|++++|+..|++++.+
T Consensus        88 ~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           88 EVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            99998        5677899999999999999999999999999997

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.26  E-value=1.4e-10  Score=90.61  Aligned_cols=124  Identities=19%  Similarity=0.183  Sum_probs=105.7

Q ss_pred             CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010063          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (519)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (519)
                      ..+.....+..+|..+...|++++|+..+++++...        |....++..+|.++...|++++|+..++++++.   
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---   75 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---   75 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---
Confidence            446667789999999999999999999999998862        223667889999999999999999999999986   


Q ss_pred             hcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH
Q 010063          278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA  345 (519)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  345 (519)
                           .|....++..+|.++...|++++|+.++++++..        .|....++..++.++...|++
T Consensus        76 -----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           76 -----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred             -----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence                 3455788999999999999999999999999986        344456788899999888764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.26  E-value=1.1e-11  Score=111.19  Aligned_cols=194  Identities=13%  Similarity=0.042  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (519)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (519)
                      +..+..+|..+...|++++|+..|++++...        |....++.++|.+|...|++++|+..+++++++        
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------   67 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------   67 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence            3458899999999999999999999999862        333678899999999999999999999999875        


Q ss_pred             ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (519)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (519)
                      .|....+++++|.++...|++++|+..|++++++.......-. ......  +  .      ..++......    ... 
T Consensus        68 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~-~~~~~~--~--~------~~~~~~~~~~----~~~-  131 (281)
T 2c2l_A           68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG-DDIPSA--L--R------IAKKKRWNSI----EER-  131 (281)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC-SHHHHH--H--H------HHHHHHHHHH----HHT-
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHH-HHHHHH--H--H------HHHHHHHHHH----HHH-
Confidence            5667889999999999999999999999999998654311101 111111  1  1      1111111111    111 


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc-cCHHHHHHHHHHH
Q 010063          363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS-KNFVEAERLLRIC  441 (519)
Q Consensus       363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a  441 (519)
                        ..+..+.+.   ..++.++  .|++++|++.++++++.        .|........++.++... +.+++|..+|.++
T Consensus       132 --~~~~~~~i~---~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a  196 (281)
T 2c2l_A          132 --RIHQESELH---SYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQV  196 (281)
T ss_dssp             --CCCCCCHHH---HHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             --HHhhhHHHH---HHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence              123333333   3344433  68899999988887763        344445555666666665 6788899999887


Q ss_pred             HH
Q 010063          442 LD  443 (519)
Q Consensus       442 l~  443 (519)
                      .+
T Consensus       197 ~~  198 (281)
T 2c2l_A          197 DE  198 (281)
T ss_dssp             SC
T ss_pred             hc
Confidence            65

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.26  E-value=1.8e-10  Score=94.28  Aligned_cols=103  Identities=16%  Similarity=0.148  Sum_probs=93.9

Q ss_pred             CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (519)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (519)
                      .+..+..+..+|.++...|++++|+.+|++++++        .|....++.++|.+|...|++++|+..+++++++    
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----   74 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV----   74 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----
Confidence            4566888999999999999999999999999997        4666889999999999999999999999999986    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010063          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (519)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (519)
                          +|....++.++|.++...|++++|+.+|++++++.
T Consensus        75 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           75 ----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence                45567789999999999999999999999999985

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.26  E-value=7.5e-12  Score=120.65  Aligned_cols=153  Identities=12%  Similarity=0.106  Sum_probs=125.1

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC--------CchHH
Q 010063          131 MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD--------DEPLL  202 (519)
Q Consensus       131 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------~~~~~  202 (519)
                      .+++++|+..++.+++.          .+..+..+..+|..++..|+|++|+..|++++.+......        ..+..
T Consensus       247 l~~~~~A~~~~~~~~~~----------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~  316 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKE----------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFL  316 (457)
T ss_dssp             EEEEECCCCGGGSCHHH----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred             hhhcccCcchhhcCHHH----------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHH
Confidence            44567788777777766          6778889999999999999999999999999988633110        02234


Q ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (519)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (519)
                      ..++.++|.+|...|++++|+..+++++.+.        |....+++++|.+|..+|++++|+..|++++++        
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------  380 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD--------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------  380 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence            6779999999999999999999999999872        334778999999999999999999999999986        


Q ss_pred             ChhhHHHHHHHHHHHHhCCCHHHHHHH
Q 010063          283 SADLVLPLFSLGSLFIKEGKAVDAESV  309 (519)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~  309 (519)
                      .|....++..++.++...+++++|...
T Consensus       381 ~P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          381 NPQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             C----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667899999999999999888753

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.26  E-value=2.5e-12  Score=124.44  Aligned_cols=179  Identities=11%  Similarity=-0.000  Sum_probs=130.2

Q ss_pred             hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010063          285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  364 (519)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  364 (519)
                      ..+..+..+|..+...|++++|+.+|++++++        +|....++.++|.++..+|++++|+..+++++++      
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------   69 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------   69 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence            34556677888999999999999999999986        4666789999999999999999999999999986      


Q ss_pred             CCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH--HHhccCHHHHHHHHH---
Q 010063          365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS--YSRSKNFVEAERLLR---  439 (519)
Q Consensus       365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~---  439 (519)
                       .++.   ..++.++|.+|..+|++++|++.+++++++.        |....++..++.+  +..+|++++|++.++   
T Consensus        70 -~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~  137 (477)
T 1wao_1           70 -DKKY---IKGYYRRAASNMALGKFRAALRDYETVVKVK--------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  137 (477)
T ss_dssp             -CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTCTTHHHHHHHHHHHHHHHHHCCC------CC
T ss_pred             -CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence             3333   4567899999999999999999999999862        2223456667777  888999999999999   


Q ss_pred             --------HHHHHHHHhcCCCCcc---hhHHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHH
Q 010063          440 --------ICLDIMTKTVGPDDQS---ISFPMLHLGITLYHLNRDK--EAEKLVLEALYIREI  489 (519)
Q Consensus       440 --------~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~--~A~~~~~~a~~~~~~  489 (519)
                              +++.+.....++..+.   ....+..+...+...+...  .+...+.++.++..+
T Consensus       138 ~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~  200 (477)
T 1wao_1          138 SVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSK  200 (477)
T ss_dssp             STTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             hhHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcc
Confidence                    5555433333333333   2333444555555555544  455578888877764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.25  E-value=1.6e-11  Score=118.33  Aligned_cols=160  Identities=16%  Similarity=0.249  Sum_probs=125.4

Q ss_pred             hcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCC-------CCHHHHH
Q 010063          174 YIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK-------TSILLVT  246 (519)
Q Consensus       174 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~  246 (519)
                      ..+++++|+..++.+....       |..+..+..+|..++..|++++|+..|++++.+.......       ..+....
T Consensus       246 ~l~~~~~A~~~~~~~~~~~-------~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~  318 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEK-------LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA  318 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHH-------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHH
Confidence            3455666666665544433       6777889999999999999999999999999975331000       0123468


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  326 (519)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  326 (519)
                      ++.++|.+|..+|++++|+..+++++++        .|....+++++|.+|..+|++++|+..|++++++        .|
T Consensus       319 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P  382 (457)
T 1kt0_A          319 AFLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NP  382 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C-
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CC
Confidence            8999999999999999999999999997        5667899999999999999999999999999985        46


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHH-HHHHHH
Q 010063          327 RVGMAMCSLAHAKCANGNAEEAVE-LYKKAL  356 (519)
Q Consensus       327 ~~~~~~~~la~~~~~~g~~~~A~~-~~~~al  356 (519)
                      ....++..++.++...|++++|.. .+.+++
T Consensus       383 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          383 QNKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666789999999999999988764 344433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.25  E-value=2e-10  Score=91.34  Aligned_cols=103  Identities=12%  Similarity=-0.013  Sum_probs=90.3

Q ss_pred             chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Q 010063          369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  448 (519)
Q Consensus       369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (519)
                      .+.....+..+|..+...|++++|+..|++++..        .|....++..+|.++...|++++|+..|++++.+    
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----   81 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM----   81 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence            3444567789999999999999999999999874        4555678899999999999999999999999985    


Q ss_pred             cCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          449 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       449 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                          .|....++..+|.+|...|++++|+.+|++++++.
T Consensus        82 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  116 (142)
T 2xcb_A           82 ----DINEPRFPFHAAECHLQLGDLDGAESGFYSARALA  116 (142)
T ss_dssp             ----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence                34555678999999999999999999999999987

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.25  E-value=5.4e-11  Score=98.82  Aligned_cols=122  Identities=13%  Similarity=0.179  Sum_probs=101.5

Q ss_pred             HHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 010063          213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS  292 (519)
Q Consensus       213 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  292 (519)
                      +...|++++|+..+++++...        |....++..+|.++...|++++|+.+|++++++.        |....++..
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~   83 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRAN--------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAA   83 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHC--------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHH
Confidence            456789999999999998862        2335688899999999999999999999999873        445678899


Q ss_pred             HHHH-HHhCCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          293 LGSL-FIKEGKA--VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       293 la~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      +|.+ +...|++  ++|+.++++++..        .|....++..+|.++...|++++|+..++++++.
T Consensus        84 la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           84 LATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            9999 8899999  9999999999986        3555668899999999999999999999999987

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.25  E-value=6.7e-11  Score=98.23  Aligned_cols=122  Identities=11%  Similarity=0.119  Sum_probs=102.1

Q ss_pred             HHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHH
Q 010063          128 MIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILL  207 (519)
Q Consensus       128 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (519)
                      +...|++++|+..++++++.          .|..+.++..+|.++...|++++|+..+++++...       |....++.
T Consensus        20 ~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~   82 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRA----------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-------GENAELYA   82 (177)
T ss_dssp             CC-----CCCCHHHHHHHHH----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------CSCHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHh----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHH
Confidence            45688999999999999988          67778899999999999999999999999999876       22244688


Q ss_pred             HHHHH-HHccccH--HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010063          208 HMGSM-YSTLENY--EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (519)
Q Consensus       208 ~l~~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (519)
                      .+|.+ +...|++  ++|+..+++++...        |....++..+|.++...|++++|+..+++++++
T Consensus        83 ~la~~l~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           83 ALATVLYYQASQHMTAQTRAMIDKALALD--------SNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            99999 8899999  99999999999862        233567889999999999999999999999986

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.23  E-value=1.8e-08  Score=90.69  Aligned_cols=223  Identities=11%  Similarity=-0.020  Sum_probs=164.1

Q ss_pred             HhcCChH-HHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHcccc----------HHHHHHHHHHHHHHHHHhcCCCC
Q 010063          173 VYIGDLK-FVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN----------YEKSMLVYQRVINVLESRYGKTS  241 (519)
Q Consensus       173 ~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~  241 (519)
                      ...|+++ +|+..+..++.+.       |....+++..+.++...|.          +++++.++..++..        +
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~n-------P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------~  104 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGAN-------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------N  104 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred             HHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------C
Confidence            4567776 7899998888765       6666678888888877665          56777777777764        3


Q ss_pred             HHHHHHHHHHHHHHhhcCC--HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHH
Q 010063          242 ILLVTSLLGMAKVLGSIGR--AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK-AVDAESVFSRILKIYT  318 (519)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~  318 (519)
                      |....++...+.++...|+  +++++.++.++++.        +|....+++..+.+....|. +++++.++.++++.  
T Consensus       105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--  174 (331)
T 3dss_A          105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--  174 (331)
T ss_dssp             TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred             CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--
Confidence            4457788899999999984  89999999999987        67778999999999999998 69999999999985  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHH
Q 010063          319 KVYGENDGRVGMAMCSLAHAKCAN--------------GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH  384 (519)
Q Consensus       319 ~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~  384 (519)
                            +|....+++..+.++...              +.++++++++.+++..       .|++..   +++.+..++.
T Consensus       175 ------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~-------~P~d~S---aW~Y~r~ll~  238 (331)
T 3dss_A          175 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-------DPNDQS---AWFYHRWLLG  238 (331)
T ss_dssp             ------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH-------STTCHH---HHHHHHHHHH
T ss_pred             ------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh-------CCCCHH---HHHHHHHHHH
Confidence                  567777899999888876              5688999999999987       344433   3343444444


Q ss_pred             Hc-----------CChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH---HhccCHHHHHHHHHHHHHH
Q 010063          385 IV-----------GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY---SRSKNFVEAERLLRICLDI  444 (519)
Q Consensus       385 ~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~  444 (519)
                      ..           +.++++++.+++.+++.        |+...++..++.+.   ...|..++...++.+..++
T Consensus       239 ~~~~~~~~~~~~~~~l~~el~~~~elle~~--------pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  304 (331)
T 3dss_A          239 AGSGRCELSVEKSTVLQSELESCKELQELE--------PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  304 (331)
T ss_dssp             SSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred             hccCccccchHHHHHHHHHHHHHHHHHhhC--------cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence            33           34567777777776642        33334444444332   2457788888888888774

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.23  E-value=1.8e-09  Score=95.54  Aligned_cols=257  Identities=13%  Similarity=0.072  Sum_probs=166.7

Q ss_pred             HHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010063          171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG  250 (519)
Q Consensus       171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  250 (519)
                      -.+..|+|..++.-..   ++    .+..+..  ....+.++|..+|++....               .+.|. ..+...
T Consensus        22 n~fy~G~yq~~i~e~~---~~----~~~~~~~--~~~~~~Rs~iAlg~~~~~~---------------~~~~~-~~a~~~   76 (310)
T 3mv2_B           22 QNYYTGNFVQCLQEIE---KF----SKVTDNT--LLFYKAKTLLALGQYQSQD---------------PTSKL-GKVLDL   76 (310)
T ss_dssp             HHHTTTCHHHHTHHHH---TS----SCCCCHH--HHHHHHHHHHHTTCCCCCC---------------SSSTT-HHHHHH
T ss_pred             HHHHhhHHHHHHHHHH---hc----CccchHH--HHHHHHHHHHHcCCCccCC---------------CCCHH-HHHHHH
Confidence            3457899998887332   22    2333332  3556677788888876421               12232 223334


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 010063          251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  330 (519)
Q Consensus       251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  330 (519)
                      ++..+.  ++   |+..+++.++.       . +....++..+|.++...|++++|+.++.+.+..     + ..+....
T Consensus        77 la~~~~--~~---a~~~l~~l~~~-------~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-----~-~~~~~le  137 (310)
T 3mv2_B           77 YVQFLD--TK---NIEELENLLKD-------K-QNSPYELYLLATAQAILGDLDKSLETCVEGIDN-----D-EAEGTTE  137 (310)
T ss_dssp             HHHHHT--TT---CCHHHHHTTTT-------S-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-----S-CSTTHHH
T ss_pred             HHHHhc--cc---HHHHHHHHHhc-------C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----C-CCcCcHH
Confidence            444442  22   56666655432       1 122344568999999999999999999998652     1 1136777


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC---chHHHHHHHHHH--HHHHHcC--ChHHHHHHHHHHHHHH
Q 010063          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD---DSIMENMRIDLA--ELLHIVG--RGQEGRELLEECLLIT  403 (519)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~~~la--~~~~~~g--~~~~A~~~~~~al~~~  403 (519)
                      ++..++.++..+|+.+.|.+.++++.+.       .++   ...  .+...++  .+....|  ++.+|..+|+++..  
T Consensus       138 a~~l~vqi~L~~~r~d~A~k~l~~~~~~-------~~d~~~~~d--~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--  206 (310)
T 3mv2_B          138 LLLLAIEVALLNNNVSTASTIFDNYTNA-------IEDTVSGDN--EMILNLAESYIKFATNKETATSNFYYYEELSQ--  206 (310)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------SCHHHHHHH--HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhc-------Cccccccch--HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--
Confidence            8889999999999999999999998776       221   011  1223444  3455556  99999999999654  


Q ss_pred             HHhhCCCChh--HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCC--CcchhHHHHHHHHHHHhcCChHHHHHH
Q 010063          404 EKYKGKEHPS--FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD--DQSISFPMLHLGITLYHLNRDKEAEKL  479 (519)
Q Consensus       404 ~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~  479 (519)
                            ..|.  ....+.+   ++..+|++++|...++.+++..-.....+  .|....++.+++.+...+|+  +|.++
T Consensus       207 ------~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l  275 (310)
T 3mv2_B          207 ------TFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDL  275 (310)
T ss_dssp             ------TSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHH
T ss_pred             ------hCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHH
Confidence                  2333  2233333   89999999999999997666432210000  25667778888888888997  88888


Q ss_pred             HHHHHHHHHHhcCCCCCcc
Q 010063          480 VLEALYIREIAFGKDSLPV  498 (519)
Q Consensus       480 ~~~a~~~~~~~~~~~~~~~  498 (519)
                      ++++.+..     |+||.+
T Consensus       276 ~~qL~~~~-----P~hp~i  289 (310)
T 3mv2_B          276 TNQLVKLD-----HEHAFI  289 (310)
T ss_dssp             HHHHHHTT-----CCCHHH
T ss_pred             HHHHHHhC-----CCChHH
Confidence            88887754     777755

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.22  E-value=2.4e-10  Score=93.26  Aligned_cols=126  Identities=11%  Similarity=0.002  Sum_probs=101.4

Q ss_pred             ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcC----CC-------chHHHHHHHHHHHHHHccccHHHHHHHH
Q 010063          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK----DD-------EPLLDAILLHMGSMYSTLENYEKSMLVY  226 (519)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~  226 (519)
                      ....+..+...|..++..|+|++|+..|.+++.+.....    +.       .|....++.++|.+|...|++++|+..+
T Consensus         7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~   86 (162)
T 3rkv_A            7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS   86 (162)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            445677899999999999999999999999998843311    11       3566778999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH-HHHHHHHHHHHh
Q 010063          227 QRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV-LPLFSLGSLFIK  299 (519)
Q Consensus       227 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~  299 (519)
                      ++++.+        +|....+++.+|.++...|++++|+..|++++++        .|... .+...++.+...
T Consensus        87 ~~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~~l~~~~~~  144 (162)
T 3rkv_A           87 SEVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------HPAAASVVAREMKIVTER  144 (162)
T ss_dssp             HHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHH
T ss_pred             HHHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHH
Confidence            999987        2444778999999999999999999999999998        34444 445555555443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.21  E-value=1e-09  Score=85.52  Aligned_cols=102  Identities=13%  Similarity=0.142  Sum_probs=88.7

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  326 (519)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  326 (519)
                      .++.+|.++...|++++|+..++++++.     .++++....++..+|.++...|++++|+..+++++..     .++++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~   73 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHD   73 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTST
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCc
Confidence            4678899999999999999999999886     3345555588999999999999999999999999986     23444


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      ....++..+|.++...|++++|+..+++++..
T Consensus        74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45778999999999999999999999999987

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.21  E-value=2.2e-09  Score=96.98  Aligned_cols=244  Identities=9%  Similarity=-0.044  Sum_probs=180.1

Q ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHh
Q 010063          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELN  278 (519)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~  278 (519)
                      +....++..+..+....+..++|+..+.+++.+        +|....+++..+.++...| .+++++..+.+++..    
T Consensus        51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~----  118 (349)
T 3q7a_A           51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----  118 (349)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----
Confidence            445555666666677777778999999999987        3445778889999999999 599999999999875    


Q ss_pred             cCCCChhhHHHHHHHHHHHHhC-C-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH--------HH
Q 010063          279 RGTESADLVLPLFSLGSLFIKE-G-KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE--------EA  348 (519)
Q Consensus       279 ~~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A  348 (519)
                          +|....+++..+.++... + ++++++.++.++++        .+|....++...+.+....|.++        ++
T Consensus       119 ----nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~--------~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eE  186 (349)
T 3q7a_A          119 ----NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL--------PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSE  186 (349)
T ss_dssp             ----TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS--------SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             ----CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHhccccccchhhHHHH
Confidence                677789999999999887 7 89999999999886        46777778999999998888877        89


Q ss_pred             HHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHH
Q 010063          349 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR-------GQEGRELLEECLLITEKYKGKEHPSFVTHLLNL  421 (519)
Q Consensus       349 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  421 (519)
                      +++++++++.       .+.+   ..+++..+.++...++       ++++++++++++.+        +|....++..+
T Consensus       187 Le~~~k~I~~-------dp~N---~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Yl  248 (349)
T 3q7a_A          187 LDWCNEMLRV-------DGRN---NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYL  248 (349)
T ss_dssp             HHHHHHHHHH-------CTTC---HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred             HHHHHHHHHh-------CCCC---HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence            9999998887       2222   4577889999988887       67888888888774        45556778777


Q ss_pred             HHHHHhccCHHH------------HHH-HHHHHHHHHHHhcCCC-----CcchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010063          422 AASYSRSKNFVE------------AER-LLRICLDIMTKTVGPD-----DQSISFPMLHLGITLYHLNRDKEAEKLVLEA  483 (519)
Q Consensus       422 a~~~~~~g~~~~------------A~~-~~~~al~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (519)
                      ..++...|+...            .+. .+....+...+..+..     .+....++.-|+.+|...|+.++|.+.++..
T Consensus       249 r~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l  328 (349)
T 3q7a_A          249 RGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKL  328 (349)
T ss_dssp             HHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            778877766400            000 0111222222222211     1345567888999999999999999988876


Q ss_pred             HH
Q 010063          484 LY  485 (519)
Q Consensus       484 ~~  485 (519)
                      .+
T Consensus       329 ~~  330 (349)
T 3q7a_A          329 SS  330 (349)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.20  E-value=4.2e-09  Score=95.20  Aligned_cols=241  Identities=11%  Similarity=0.016  Sum_probs=175.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHhcCCC
Q 010063          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLESRYGKT  240 (519)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~  240 (519)
                      ..++..+..+....+..++|+..+++++.+.       |....+++..+.++...| .+++++.++.+++..        
T Consensus        54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~n-------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--------  118 (349)
T 3q7a_A           54 KDAMDYFRAIAAKEEKSERALELTEIIVRMN-------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--------  118 (349)
T ss_dssp             HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--------
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC-------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------
Confidence            3344444444445566678999999998875       555667999999999999 599999999999864        


Q ss_pred             CHHHHHHHHHHHHHHhhc-C-CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHH--------HHHHHH
Q 010063          241 SILLVTSLLGMAKVLGSI-G-RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV--------DAESVF  310 (519)
Q Consensus       241 ~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~  310 (519)
                      +|....+++..+.++... + ++++++.++.++++.        +|....+++..+.+....|.++        ++++++
T Consensus       119 nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~  190 (349)
T 3q7a_A          119 NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWC  190 (349)
T ss_dssp             TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHH
Confidence            344577888889999887 7 899999999998864        6777889999999998888887        899999


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH
Q 010063          311 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN-------AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL  383 (519)
Q Consensus       311 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~  383 (519)
                      +++++.        +|....+++..+.++...++       ++++++++++++..       .+++   ..+++.+..++
T Consensus       191 ~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~-------~P~n---~SaW~Ylr~Ll  252 (349)
T 3q7a_A          191 NEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL-------IPHN---VSAWNYLRGFL  252 (349)
T ss_dssp             HHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHH
T ss_pred             HHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHH
Confidence            999885        56777799999999999887       78999999999887       3334   34567777778


Q ss_pred             HHcCChHH------------HHH-HHHHHHHHHHHhhCCC-----ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063          384 HIVGRGQE------------GRE-LLEECLLITEKYKGKE-----HPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (519)
Q Consensus       384 ~~~g~~~~------------A~~-~~~~al~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (519)
                      ...|+...            .+. .+....+...+..+..     .+....++..++.+|...|+.++|.++++...+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~  330 (349)
T 3q7a_A          253 KHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS  330 (349)
T ss_dssp             HHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            77776410            000 0111222222222111     134556888899999999999999999988654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.18  E-value=1e-09  Score=84.70  Aligned_cols=117  Identities=21%  Similarity=0.387  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (519)
                      ..++..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+.++++++..        
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------   72 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------   72 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------
Confidence            677889999999999999999999999986        3445678899999999999999999999999885        


Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcC
Q 010063          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG  387 (519)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  387 (519)
                      .|....++..+|.++...|++++|..++++++..       .++.+   .++..++.++...|
T Consensus        73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------~~~~~---~~~~~l~~~~~~~g  125 (125)
T 1na0_A           73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------DPNNA---EAKQNLGNAKQKQG  125 (125)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCH---HHHHHHHHHHHHHC
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------CCCcH---HHHHHHHHHHHhcc
Confidence            2344567889999999999999999999999987       33333   34577788776654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.17  E-value=4.3e-09  Score=93.16  Aligned_cols=262  Identities=13%  Similarity=0.032  Sum_probs=170.1

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHH
Q 010063          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD  203 (519)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  203 (519)
                      .++..+-.|+|..++.-..+   +       .+..+.  .....+.++|+.+|++...              ..+.|.. 
T Consensus        19 ~ikn~fy~G~yq~~i~e~~~---~-------~~~~~~--~~~~~~~Rs~iAlg~~~~~--------------~~~~~~~-   71 (310)
T 3mv2_B           19 NIKQNYYTGNFVQCLQEIEK---F-------SKVTDN--TLLFYKAKTLLALGQYQSQ--------------DPTSKLG-   71 (310)
T ss_dssp             HHHHHHTTTCHHHHTHHHHT---S-------SCCCCH--HHHHHHHHHHHHTTCCCCC--------------CSSSTTH-
T ss_pred             HHHHHHHhhHHHHHHHHHHh---c-------CccchH--HHHHHHHHHHHHcCCCccC--------------CCCCHHH-
Confidence            45566779999999873321   1       222333  3556677888899998742              1222332 


Q ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (519)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (519)
                      .+...++..+.  ++   |+..+++.+..     +...   ..++..+|.++...|++++|+.++.+.+..     ++ .
T Consensus        72 ~a~~~la~~~~--~~---a~~~l~~l~~~-----~~~~---~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-----~~-~  132 (310)
T 3mv2_B           72 KVLDLYVQFLD--TK---NIEELENLLKD-----KQNS---PYELYLLATAQAILGDLDKSLETCVEGIDN-----DE-A  132 (310)
T ss_dssp             HHHHHHHHHHT--TT---CCHHHHHTTTT-----SCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-----SC-S
T ss_pred             HHHHHHHHHhc--cc---HHHHHHHHHhc-----CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CC-C
Confidence            22444444442  22   66666655431     1122   233468999999999999999999998653     11 1


Q ss_pred             hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCh------hHHHHHHHHHHHHHHCC--CHHHHHHHHHHH
Q 010063          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG------RVGMAMCSLAHAKCANG--NAEEAVELYKKA  355 (519)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------~~~~~~~~la~~~~~~g--~~~~A~~~~~~a  355 (519)
                      +....++..++.++..+|+.+.|.+.++++.+.        +|      +.......-|++....|  ++.+|..+|+++
T Consensus       133 ~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El  204 (310)
T 3mv2_B          133 EGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEEL  204 (310)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            367888889999999999999999999998765        23      22223333344455556  999999999996


Q ss_pred             HHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHHHhccCHHH
Q 010063          356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE--HPSFVTHLLNLAASYSRSKNFVE  433 (519)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~  433 (519)
                      .+.       .++ ......+.+   ++..+|++++|...++..++........+  .|..+.++.+++.+....|+  +
T Consensus       205 ~~~-------~p~-~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~  271 (310)
T 3mv2_B          205 SQT-------FPT-WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--D  271 (310)
T ss_dssp             HTT-------SCS-HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--T
T ss_pred             HHh-------CCC-cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--H
Confidence            543       222 111122233   89999999999999997766542210000  25567788888888888897  8


Q ss_pred             HHHHHHHHHHHHHHhcCCCCcchh
Q 010063          434 AERLLRICLDIMTKTVGPDDQSIS  457 (519)
Q Consensus       434 A~~~~~~al~~~~~~~~~~~~~~~  457 (519)
                      |.++++++...     .|+||.+.
T Consensus       272 a~~l~~qL~~~-----~P~hp~i~  290 (310)
T 3mv2_B          272 TEDLTNQLVKL-----DHEHAFIK  290 (310)
T ss_dssp             THHHHHHHHHT-----TCCCHHHH
T ss_pred             HHHHHHHHHHh-----CCCChHHH
Confidence            88999888873     46666554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.17  E-value=9e-10  Score=85.06  Aligned_cols=117  Identities=18%  Similarity=0.341  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (519)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (519)
                      ..++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+.+++++++.        
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------   72 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------   72 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------
Confidence            4568899999999999999999999998762        222567889999999999999999999999886        


Q ss_pred             ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC
Q 010063          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG  343 (519)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  343 (519)
                      .|....++..+|.++...|++++|..++++++..        .|....++..++.++...|
T Consensus        73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence            3445678899999999999999999999999885        3444557778888776544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.16  E-value=1.6e-09  Score=85.50  Aligned_cols=101  Identities=15%  Similarity=0.078  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD  452 (519)
Q Consensus       373 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  452 (519)
                      ...+..+|.++...|++++|+..|++++..        .|....++..+|.++...|++++|+..+++++.+        
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------   72 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------   72 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence            456789999999999999999999999985        3445678999999999999999999999999985        


Q ss_pred             CcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010063          453 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI  489 (519)
Q Consensus       453 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  489 (519)
                      .|....++..+|.++...|++++|+.+|++++++...
T Consensus        73 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           73 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            3556778999999999999999999999999998865

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.16  E-value=3e-09  Score=82.80  Aligned_cols=103  Identities=17%  Similarity=0.112  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 010063          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD  368 (519)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  368 (519)
                      .++.+|..+...|++++|+..++++++.     .++++....++..+|.++...|++++|+..+++++..       .|+
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-------~p~   71 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-------YPT   71 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-------CCC
Confidence            4678899999999999999999999886     3445556678999999999999999999999999987       455


Q ss_pred             chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010063          369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (519)
Q Consensus       369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (519)
                      ++....++..+|.++...|++++|+..+++++...
T Consensus        72 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  106 (129)
T 2xev_A           72 HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY  106 (129)
T ss_dssp             STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            55556678999999999999999999999998853

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.15  E-value=1.6e-09  Score=85.46  Aligned_cols=102  Identities=19%  Similarity=0.149  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCC
Q 010063          244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  323 (519)
Q Consensus       244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  323 (519)
                      .+..+..+|.++...|++++|+..|++++..        .|....++.++|.++...|++++|+..+++++.+       
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------   72 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------   72 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence            3678889999999999999999999999987        4556789999999999999999999999999986       


Q ss_pred             CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063          324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (519)
Q Consensus       324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (519)
                       .|....++..+|.++...|++++|+..+++++.....
T Consensus        73 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           73 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             -CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence             3556678999999999999999999999999998765

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.15  E-value=1.9e-09  Score=84.03  Aligned_cols=106  Identities=8%  Similarity=0.152  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCC
Q 010063          244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  323 (519)
Q Consensus       244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  323 (519)
                      .+..+..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+.++++++...... ..
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~   73 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-RE   73 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-ch
Confidence            3667889999999999999999999999987        34557889999999999999999999999999986542 12


Q ss_pred             CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      ..+....++..+|.++...|++++|+.++++++..
T Consensus        74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            22334778999999999999999999999999986

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.14  E-value=9.4e-10  Score=102.51  Aligned_cols=133  Identities=13%  Similarity=0.139  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010063          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY--------GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT  273 (519)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  273 (519)
                      .+..+..+|..+...|++++|+..|++++++.....        ....+....++.++|.+|...|++++|+.+++++++
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            445688999999999999999999999998654420        012466788999999999999999999999999998


Q ss_pred             HHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 010063          274 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE  350 (519)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  350 (519)
                      +        .|....+++.+|.+|..+|++++|+..+++++++        .|....++..++.++...++++++..
T Consensus       302 ~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          302 I--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             T--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             h--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            6        5667889999999999999999999999999986        34445677888888888888877754

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.14  E-value=4.1e-10  Score=86.53  Aligned_cols=97  Identities=14%  Similarity=0.026  Sum_probs=87.1

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  326 (519)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  326 (519)
                      .+..+|..+...|++++|+..++++++.        .|....++..+|.++...|++++|+..+++++++        .|
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P   82 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP   82 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence            4678899999999999999999999987        5677899999999999999999999999999996        45


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010063          327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (519)
Q Consensus       327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (519)
                      ....++.++|.++...|++++|+..++++++..
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ  115 (121)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            556689999999999999999999999998763

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.14  E-value=1.3e-09  Score=85.03  Aligned_cols=107  Identities=10%  Similarity=0.097  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCC
Q 010063          160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK  239 (519)
Q Consensus       160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  239 (519)
                      ..+..+..+|..+...|++++|+..+++++...       |....++..+|.++...|++++|+.++++++...... ..
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~   73 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELD-------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-RE   73 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TT
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-ch
Confidence            456788999999999999999999999998774       2334568899999999999999999999999986542 23


Q ss_pred             CCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010063          240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (519)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (519)
                      +.+....++..+|.++...|++++|+.+++++++.
T Consensus        74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            33445788999999999999999999999999986

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.12  E-value=1.3e-09  Score=101.50  Aligned_cols=132  Identities=15%  Similarity=0.150  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR--------GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (519)
                      +..+..+|..+...|++++|+..|++++++.....        ....+....++.++|.+|..+|++++|+.++++++++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            55678899999999999999999999999655420        0024667889999999999999999999999999984


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHH
Q 010063          317 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE  394 (519)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  394 (519)
                              +|....++..+|.+|...|++++|+..|++++++       .+++.   .++..++.++...++++++..
T Consensus       303 --------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l-------~P~~~---~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          303 --------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-------APEDK---AIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CCCCH---HHHHHHHHHHHHHHHHHHHHH
Confidence                    4666788999999999999999999999999988       33333   355778888888888777654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.09  E-value=6.4e-10  Score=85.45  Aligned_cols=96  Identities=13%  Similarity=-0.004  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      .+..+..+...|++++|+..++++++.          .|..+.++..+|.++...|++++|+..+++++.+.       |
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~----------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------P   82 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQK----------EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------P   82 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH----------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------C
Confidence            566888899999999999999999998          88889999999999999999999999999999875       3


Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVL  233 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  233 (519)
                      ....++..+|.++...|++++|+..++++++..
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ  115 (121)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            344568999999999999999999999998753

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.09  E-value=3.1e-09  Score=81.03  Aligned_cols=113  Identities=12%  Similarity=0.040  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (519)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (519)
                      ...+..+|..+...|++++|+..+++++...        |....++..+|.++...|++++|+..++++++.        
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------   67 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------   67 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence            3458899999999999999999999998862        222567889999999999999999999999987        


Q ss_pred             ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 010063          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK  339 (519)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  339 (519)
                      .|....++..+|.++...|++++|...++++++.        .|....++..++.+.
T Consensus        68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME  116 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHhh
Confidence            4556788999999999999999999999999874        344444566666543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.08  E-value=3.5e-09  Score=80.72  Aligned_cols=98  Identities=18%  Similarity=0.163  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (519)
                      +..+..+|..+...|++++|+..+++++..        .|....++..+|.++...|++++|+..++++++.        
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------   67 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------   67 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence            567888999999999999999999999986        4555788999999999999999999999999986        


Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      .|....++..+|.++...|++++|...++++++.
T Consensus        68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            3445568899999999999999999999999876

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=2e-09  Score=86.10  Aligned_cols=104  Identities=14%  Similarity=0.069  Sum_probs=90.9

Q ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (519)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (519)
                      +.....+..+|..+...|++++|+.+|+++++.     .++++....++..+|.++...|++++|+..++++++.     
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----   94 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-----   94 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----
Confidence            344566899999999999999999999999874     3344455788999999999999999999999999987     


Q ss_pred             CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (519)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (519)
                         .|....++..+|.++...|++++|+.++++++++
T Consensus        95 ---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A           95 ---DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             ---TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ---CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence               3455788999999999999999999999999986

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=2.8e-09  Score=85.21  Aligned_cols=120  Identities=17%  Similarity=0.115  Sum_probs=98.7

Q ss_pred             ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (519)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (519)
                      .+..+..+..+|..+...|++++|+..+++++...    ++++....++..+|.++...|++++|+..+++++...    
T Consensus        24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----   95 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD----   95 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC----
Confidence            45667889999999999999999999999998764    4444457789999999999999999999999998862    


Q ss_pred             CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 010063          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF  297 (519)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  297 (519)
                       ++   ...++..+|.++...|++++|+.++++++++        .|....++..++.+.
T Consensus        96 -~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           96 -GG---DVKALYRRSQALEKLGRLDQAVLDLQRCVSL--------EPKNKVFQEALRNIS  143 (148)
T ss_dssp             -SC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHH
T ss_pred             -cc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHH
Confidence             22   2677889999999999999999999999987        344445555555554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.05  E-value=6.5e-10  Score=102.51  Aligned_cols=144  Identities=17%  Similarity=0.089  Sum_probs=88.5

Q ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc--CCC-------CHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 010063          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY--GKT-------SILLVTSLLGMAKVLGSIGRAKKAVEIYHR  270 (519)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  270 (519)
                      +..+..+..+|..+...|++++|+..|++++.+.....  ...       ......++.++|.+|...|++++|+.++++
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~  255 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI  255 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            44556688999999999999999999999998732210  000       000114789999999999999999999999


Q ss_pred             HHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHCCCHHHHH
Q 010063          271 VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA-KCANGNAEEAV  349 (519)
Q Consensus       271 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~  349 (519)
                      ++++        .|....+++++|.+|..+|++++|+..|++++++        .|....++..++.+ ....+..+++.
T Consensus       256 al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--------~p~~~~a~~~L~~l~~~~~~~~~~a~  319 (338)
T 2if4_A          256 VLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--------APDDKAIRRELRALAEQEKALYQKQK  319 (338)
T ss_dssp             HHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------
T ss_pred             HHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9987        4666889999999999999999999999999875        34555677778877 44566778888


Q ss_pred             HHHHHHHHHH
Q 010063          350 ELYKKALRVI  359 (519)
Q Consensus       350 ~~~~~al~~~  359 (519)
                      ..|.+++...
T Consensus       320 ~~~~~~l~~~  329 (338)
T 2if4_A          320 EMYKGIFKGK  329 (338)
T ss_dssp             ----------
T ss_pred             HHHHHhhCCC
Confidence            8998888763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.02  E-value=6.8e-09  Score=102.13  Aligned_cols=190  Identities=9%  Similarity=-0.025  Sum_probs=158.4

Q ss_pred             HHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCC----------hHHHHHHH
Q 010063          117 QLLELFNEVKSMIMMGNK-NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGD----------LKFVQSLL  185 (519)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~  185 (519)
                      ....+..........|++ ++|++.+++++..          .|+...+|+..+.++...|+          +++++..+
T Consensus        27 ~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~----------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~   96 (567)
T 1dce_A           27 LYQSATQAVFQKRQAGELDESVLELTSQILGA----------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFL   96 (567)
T ss_dssp             HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHH
Confidence            344455555566677776 5779999999998          89999999999999999988          89999999


Q ss_pred             HHHHhhhhhcCCCchHHHHHHHHHHHHHHccc--cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcC-CHH
Q 010063          186 DMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE--NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAK  262 (519)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~  262 (519)
                      ++++...       |....+|+..+.++...|  ++++++..+.++++.        +|....++...+.+....| .++
T Consensus        97 ~~~l~~~-------pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~  161 (567)
T 1dce_A           97 ESCLRVN-------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPA  161 (567)
T ss_dssp             HHHHHHC-------TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHH
T ss_pred             HHHHHhC-------CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--------ccccccHHHHHHHHHHHcCCChH
Confidence            9988765       555667999999999999  779999999999986        3444778899999999999 899


Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 010063          263 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE--------------GKAVDAESVFSRILKIYTKVYGENDGRV  328 (519)
Q Consensus       263 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~  328 (519)
                      ++++++.++++.        +|....+|+..+.++...              +.+++|++++.+++.+        .|..
T Consensus       162 ~el~~~~~~I~~--------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~  225 (567)
T 1dce_A          162 EELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPND  225 (567)
T ss_dssp             HHHHHHHTTTTT--------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSC
T ss_pred             HHHHHHHHHHHH--------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCC
Confidence            999999999875        677789999999998874              5679999999999986        4555


Q ss_pred             HHHHHHHHHHHHHCCCHHH
Q 010063          329 GMAMCSLAHAKCANGNAEE  347 (519)
Q Consensus       329 ~~~~~~la~~~~~~g~~~~  347 (519)
                      ..+|+.++.++...+++++
T Consensus       226 ~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          226 QSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SHHHHHHHHHHSCCCCCSC
T ss_pred             ccHHHHHHHHHhcCCCccc
Confidence            6688899999998888655

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.01  E-value=8.1e-10  Score=101.85  Aligned_cols=138  Identities=12%  Similarity=0.081  Sum_probs=86.8

Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchH--------------HHHHHHHHHHHHHccccHHHHHH
Q 010063          159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL--------------LDAILLHMGSMYSTLENYEKSML  224 (519)
Q Consensus       159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~  224 (519)
                      +..+..+..+|..++..|++++|+..|++++.....    ...              ...+++++|.++...|++++|+.
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~----~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~  251 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGD----DFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG  251 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCH----HHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc----chhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            445667889999999999999999999999887521    110              11378999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH-HHhCCCH
Q 010063          225 VYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSL-FIKEGKA  303 (519)
Q Consensus       225 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~  303 (519)
                      ++++++++.        |....+++++|.+|...|++++|+..|++++++        .|....++..++.+ ....+..
T Consensus       252 ~~~~al~~~--------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--------~p~~~~a~~~L~~l~~~~~~~~  315 (338)
T 2if4_A          252 HCNIVLTEE--------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--------APDDKAIRRELRALAEQEKALY  315 (338)
T ss_dssp             HHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------
T ss_pred             HHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHH
Confidence            999999862        334678999999999999999999999999887        34456677788877 4456677


Q ss_pred             HHHHHHHHHHHHH
Q 010063          304 VDAESVFSRILKI  316 (519)
Q Consensus       304 ~~A~~~~~~al~~  316 (519)
                      +++...|.+++..
T Consensus       316 ~~a~~~~~~~l~~  328 (338)
T 2if4_A          316 QKQKEMYKGIFKG  328 (338)
T ss_dssp             -------------
T ss_pred             HHHHHHHHHhhCC
Confidence            8888888888775

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.00  E-value=2.8e-07  Score=92.04  Aligned_cols=230  Identities=10%  Similarity=0.061  Sum_probs=167.6

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHH-HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 010063          220 EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV-EIYHRVITILELNRGTESADLVLPLFSLGSLFI  298 (519)
Q Consensus       220 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  298 (519)
                      ......|++++...        |.....+...+..+...|+.++|. ..|++|+..        .|.....+..++....
T Consensus       326 ~Rv~~~Ye~aL~~~--------p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--------~P~s~~Lwl~~a~~ee  389 (679)
T 4e6h_A          326 ARMTYVYMQAAQHV--------CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--------IPNSAVLAFSLSEQYE  389 (679)
T ss_dssp             HHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHH
Confidence            34567788888763        333667778888889999999997 999999875        3444567788899999


Q ss_pred             hCCCHHHHHHHHHHHHHHHHHhc------CCCC--------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010063          299 KEGKAVDAESVFSRILKIYTKVY------GEND--------GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  364 (519)
Q Consensus       299 ~~g~~~~A~~~~~~al~~~~~~~------~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  364 (519)
                      ..|++++|...|++++.......      .+..        .....+|...+.+..+.|..+.|..+|.+|++....   
T Consensus       390 ~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~---  466 (679)
T 4e6h_A          390 LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL---  466 (679)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG---
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---
Confidence            99999999999999998642111      0110        124456777788888899999999999999875111   


Q ss_pred             CCCCchHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063          365 MSLDDSIMENMRIDLAELLHIVG-RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (519)
Q Consensus       365 ~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (519)
                         ..   ..++...|.+....+ +.+.|..+|+++++...     +.+.   .+...+......|+.+.|..+|++++.
T Consensus       467 ---~~---~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-----~~~~---~w~~y~~fe~~~~~~~~AR~lferal~  532 (679)
T 4e6h_A          467 ---VT---PDIYLENAYIEYHISKDTKTACKVLELGLKYFA-----TDGE---YINKYLDFLIYVNEESQVKSLFESSID  532 (679)
T ss_dssp             ---SC---THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-----TCHH---HHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred             ---CC---hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CchH---HHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence               11   123345566666654 58999999999998652     2333   445667777888999999999999987


Q ss_pred             HHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                      ..     ++.......+......-...|+.+.+....+++.+..
T Consensus       533 ~~-----~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~  571 (679)
T 4e6h_A          533 KI-----SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF  571 (679)
T ss_dssp             TS-----SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred             hc-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            31     1112455667777778888999999999999998765

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.98  E-value=1.4e-09  Score=83.17  Aligned_cols=90  Identities=13%  Similarity=0.174  Sum_probs=76.1

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 010063          215 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG  294 (519)
Q Consensus       215 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  294 (519)
                      ..|++++|+.+|++++++     +.++|....++.++|.+|...|++++|+.++++++++        .|....++.++|
T Consensus         2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~   68 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA   68 (117)
T ss_dssp             -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence            468999999999999874     2235777899999999999999999999999999987        456688999999


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHHH
Q 010063          295 SLFIKEGKAVDAESVFSRILKIY  317 (519)
Q Consensus       295 ~~~~~~g~~~~A~~~~~~al~~~  317 (519)
                      .++...|++++|+..+++++...
T Consensus        69 ~~~~~~g~~~~A~~~~~~al~~~   91 (117)
T 3k9i_A           69 MVLYNLGRYEQGVELLLKIIAET   91 (117)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999863

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.95  E-value=1.6e-09  Score=81.85  Aligned_cols=98  Identities=10%  Similarity=0.053  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (519)
                      ..++..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|+.+++++++.        
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------   69 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--------   69 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence            445678999999999999999999999987        3445778999999999999999999999999985        


Q ss_pred             Chh--HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
Q 010063          325 DGR--VGMAMCSLAHAKCAN-GNAEEAVELYKKALRV  358 (519)
Q Consensus       325 ~~~--~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  358 (519)
                      .|.  ...++..+|.++... |++++|++++++++..
T Consensus        70 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           70 IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence            344  566889999999999 9999999999998875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.94  E-value=2.6e-08  Score=97.98  Aligned_cols=174  Identities=7%  Similarity=-0.054  Sum_probs=146.4

Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHHHHhcCCCChhHH
Q 010063          260 RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK----------AVDAESVFSRILKIYTKVYGENDGRVG  329 (519)
Q Consensus       260 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~  329 (519)
                      ..++|++.+.+++.+        .|....+|+..+.++...|+          +++++..+++++..        +|...
T Consensus        44 ~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------~pK~y  107 (567)
T 1dce_A           44 LDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPKSY  107 (567)
T ss_dssp             CSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------CTTCH
T ss_pred             CCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--------CCCCH
Confidence            346789999999987        67788999999999999988          99999999999984        57777


Q ss_pred             HHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHh
Q 010063          330 MAMCSLAHAKCANG--NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG-RGQEGRELLEECLLITEKY  406 (519)
Q Consensus       330 ~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~  406 (519)
                      .+|...+.++...|  ++++++++++++++..       +..   ..+|...+.++...| .+++++++++++++     
T Consensus       108 ~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-------~~N---~~aW~~R~~~l~~l~~~~~~el~~~~~~I~-----  172 (567)
T 1dce_A          108 GTWHHRCWLLSRLPEPNWARELELCARFLEAD-------ERN---FHCWDYRRFVAAQAAVAPAEELAFTDSLIT-----  172 (567)
T ss_dssp             HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHTCCCHHHHHHHHHTTTT-----
T ss_pred             HHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-------ccc---ccHHHHHHHHHHHcCCChHHHHHHHHHHHH-----
Confidence            89999999999999  7799999999999982       222   567788999999999 89999999998876     


Q ss_pred             hCCCChhHHHHHHHHHHHHHhc--------------cCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCC
Q 010063          407 KGKEHPSFVTHLLNLAASYSRS--------------KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR  472 (519)
Q Consensus       407 ~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  472 (519)
                         .+|....+|...+.++...              +.+++|++++.+++.+        .|....++..++.++...++
T Consensus       173 ---~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          173 ---RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             ---TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCCCC
T ss_pred             ---HCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcCCC
Confidence               3566678888888888774              6689999999999984        35566788899999998888


Q ss_pred             hHH
Q 010063          473 DKE  475 (519)
Q Consensus       473 ~~~  475 (519)
                      +++
T Consensus       242 ~~~  244 (567)
T 1dce_A          242 HDV  244 (567)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            665

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.94  E-value=3.6e-09  Score=80.79  Aligned_cols=89  Identities=20%  Similarity=0.169  Sum_probs=74.2

Q ss_pred             hcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010063          174 YIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK  253 (519)
Q Consensus       174 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  253 (519)
                      ..|++++|+..|++++...    .++|....++..+|.++...|++++|+.+++++++..        |....++..+|.
T Consensus         2 ~~g~~~~A~~~~~~al~~~----~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~   69 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASG----LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--------PNHQALRVFYAM   69 (117)
T ss_dssp             -----CCCHHHHHHHHSSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcC----CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCchHHHHHHHH
Confidence            4689999999999998752    3357888889999999999999999999999999872        333678889999


Q ss_pred             HHhhcCCHHHHHHHHHHHHHH
Q 010063          254 VLGSIGRAKKAVEIYHRVITI  274 (519)
Q Consensus       254 ~~~~~g~~~~A~~~~~~al~~  274 (519)
                      ++...|++++|+..+++++..
T Consensus        70 ~~~~~g~~~~A~~~~~~al~~   90 (117)
T 3k9i_A           70 VLYNLGRYEQGVELLLKIIAE   90 (117)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999999999987

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.93  E-value=3e-07  Score=91.83  Aligned_cols=230  Identities=10%  Similarity=-0.005  Sum_probs=170.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHH-HHHHHHHhhhhhcCCCchHHHHHHHHHHHHH
Q 010063          135 NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQ-SLLDMMSGIVDSLKDDEPLLDAILLHMGSMY  213 (519)
Q Consensus       135 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  213 (519)
                      +.....|++++..          .|..+.+|...+......|+.++|. .+|++++...       |.....+...+...
T Consensus       326 ~Rv~~~Ye~aL~~----------~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-------P~s~~Lwl~~a~~e  388 (679)
T 4e6h_A          326 ARMTYVYMQAAQH----------VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-------PNSAVLAFSLSEQY  388 (679)
T ss_dssp             HHHHHHHHHHHHH----------TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----------cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHH
Confidence            3456778888877          6667889999999999999999997 9999998754       22234477888889


Q ss_pred             HccccHHHHHHHHHHHHHHHHHhc------CCCC--------HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063          214 STLENYEKSMLVYQRVINVLESRY------GKTS--------ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (519)
Q Consensus       214 ~~~g~~~~A~~~~~~al~~~~~~~------~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (519)
                      ...|++++|...|++++.......      .+..        .....++...+......|+.+.|..+|.+|++..    
T Consensus       389 e~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~----  464 (679)
T 4e6h_A          389 ELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK----  464 (679)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG----
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----
Confidence            999999999999999998642110      0110        1234567777888888899999999999998641    


Q ss_pred             CCCChhhHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          280 GTESADLVLPLFSLGSLFIKEG-KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                         .+.....+...+.+....+ +++.|..+|+++++.+.     +.+   ..+...+......|+.+.|..+|++++..
T Consensus       465 ---~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-----~~~---~~w~~y~~fe~~~~~~~~AR~lferal~~  533 (679)
T 4e6h_A          465 ---KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA-----TDG---EYINKYLDFLIYVNEESQVKSLFESSIDK  533 (679)
T ss_dssp             ---GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-----TCH---HHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred             ---CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----Cch---HHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence               1112345556666666665 49999999999999742     223   34456677778889999999999999875


Q ss_pred             HHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010063          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (519)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (519)
                      .       ++......++......-...|+.+.+..+.+++.+..
T Consensus       534 ~-------~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~  571 (679)
T 4e6h_A          534 I-------SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF  571 (679)
T ss_dssp             S-------SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred             c-------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            2       2223345566777888888999999999999988764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.91  E-value=2.1e-09  Score=81.13  Aligned_cols=97  Identities=22%  Similarity=0.174  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (519)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (519)
                      .++..+|.++...|++++|+..++++++..     ++   ...++..+|.++...|++++|+.+++++++.        .
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~   70 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-----PE---ESKYWLMKGKALYNLERYEEAVDCYNYVINV--------I   70 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-----CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------S
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-----cC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------C
Confidence            347889999999999999999999998862     22   2567889999999999999999999999986        3


Q ss_pred             hh--hHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHH
Q 010063          284 AD--LVLPLFSLGSLFIKE-GKAVDAESVFSRILKI  316 (519)
Q Consensus       284 ~~--~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  316 (519)
                      |.  ...++..+|.++... |++++|+.++++++..
T Consensus        71 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence            44  678899999999999 9999999999998864

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.83  E-value=1.1e-08  Score=80.43  Aligned_cols=86  Identities=15%  Similarity=0.114  Sum_probs=76.1

Q ss_pred             hcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHHHHHhcCCCCh
Q 010063          257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA----------VDAESVFSRILKIYTKVYGENDG  326 (519)
Q Consensus       257 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~  326 (519)
                      +.+.+++|+..+++++++        .|..+.++.++|.++...+++          ++|+..|++++++        +|
T Consensus        14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP   77 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DP   77 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred             HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------Cc
Confidence            457789999999999998        677889999999999998875          5999999999986        57


Q ss_pred             hHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHH
Q 010063          327 RVGMAMCSLAHAKCANG-----------NAEEAVELYKKALRV  358 (519)
Q Consensus       327 ~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~  358 (519)
                      ....+++++|.+|..+|           ++++|+.+|++|+++
T Consensus        78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            77789999999999875           899999999999998

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.80  E-value=1.8e-08  Score=79.20  Aligned_cols=87  Identities=10%  Similarity=0.107  Sum_probs=76.7

Q ss_pred             HHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHhhhhhcCCC
Q 010063          129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDL----------KFVQSLLDMMSGIVDSLKDD  198 (519)
Q Consensus       129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~  198 (519)
                      -+.+.+++|+..+++++++          .|..+.++.++|.++...|++          ++|+..|++++++.      
T Consensus        13 ~r~~~feeA~~~~~~Ai~l----------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld------   76 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKS----------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID------   76 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHhHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC------
Confidence            3456789999999999999          888999999999999998876          49999999999886      


Q ss_pred             chHHHHHHHHHHHHHHccc-----------cHHHHHHHHHHHHHH
Q 010063          199 EPLLDAILLHMGSMYSTLE-----------NYEKSMLVYQRVINV  232 (519)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~  232 (519)
                       |....+++++|.+|...|           ++++|+.+|++|+++
T Consensus        77 -P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           77 -PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence             666677999999999875           899999999999997

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.77  E-value=1e-07  Score=68.66  Aligned_cols=86  Identities=19%  Similarity=0.301  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (519)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (519)
                      +....++..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+.++++++++     
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----   72 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----   72 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence            355778899999999999999999999999987        4555788999999999999999999999999986     


Q ss_pred             CCCChhHHHHHHHHHHHHHHCC
Q 010063          322 GENDGRVGMAMCSLAHAKCANG  343 (519)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g  343 (519)
                         .|....++.++|.++...|
T Consensus        73 ---~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 ---DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHC
T ss_pred             ---CCCCHHHHHHHHHHHHhcC
Confidence               3455567888998887654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.76  E-value=4.9e-08  Score=74.11  Aligned_cols=84  Identities=25%  Similarity=0.196  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh
Q 010063          390 QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH  469 (519)
Q Consensus       390 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  469 (519)
                      ++|+..|++++..        .|....++..+|.+|...|++++|+.+|++++.+        .|....++..+|.+|..
T Consensus         2 ~~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~   65 (115)
T 2kat_A            2 QAITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQG   65 (115)
T ss_dssp             CCHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHH
Confidence            3577778887763        4455678999999999999999999999999984        35567788999999999


Q ss_pred             cCChHHHHHHHHHHHHHHHH
Q 010063          470 LNRDKEAEKLVLEALYIREI  489 (519)
Q Consensus       470 ~g~~~~A~~~~~~a~~~~~~  489 (519)
                      .|++++|+.+|++++++...
T Consensus        66 ~g~~~~A~~~~~~al~~~~~   85 (115)
T 2kat_A           66 QGDRAGARQAWESGLAAAQS   85 (115)
T ss_dssp             HTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhccc
Confidence            99999999999999998754

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.73  E-value=8.5e-09  Score=77.73  Aligned_cols=96  Identities=18%  Similarity=0.098  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (519)
                      +..+..+|.++...|++++|+..|++++++        .|....++.++|.++...|++++|+..+++++++.     ++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~   70 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-----ST   70 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-----SS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CC
Confidence            567889999999999999999999999987        45567889999999999999999999999999852     11


Q ss_pred             C---hhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 010063          325 D---GRVGMAMCSLAHAKCANGNAEEAVELYK  353 (519)
Q Consensus       325 ~---~~~~~~~~~la~~~~~~g~~~~A~~~~~  353 (519)
                      +   .....++..+|.++...|++++|+..++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           71 AEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence            1   1126678889999988888777665443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.71  E-value=1.4e-07  Score=67.87  Aligned_cols=86  Identities=15%  Similarity=0.261  Sum_probs=72.7

Q ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (519)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (519)
                      +....++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+.++++++++     
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----   72 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----   72 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence            4556678999999999999999999999999862        223567889999999999999999999999987     


Q ss_pred             CCCChhhHHHHHHHHHHHHhCC
Q 010063          280 GTESADLVLPLFSLGSLFIKEG  301 (519)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g  301 (519)
                         .|....++.++|.++...|
T Consensus        73 ---~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 ---DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHC
T ss_pred             ---CCCCHHHHHHHHHHHHhcC
Confidence               4556788889999887654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.71  E-value=1.3e-07  Score=70.97  Aligned_cols=91  Identities=10%  Similarity=-0.034  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCC
Q 010063          415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD  494 (519)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  494 (519)
                      +..+..+|.++...|++++|+..|++++.+        .|....++.++|.++..+|++++|+..+++++++.     ++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~   70 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-----ST   70 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-----SS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CC
Confidence            467889999999999999999999999985        35556788999999999999999999999999753     44


Q ss_pred             CCcc-hhhHHHHHHHHHHHHhhhcc
Q 010063          495 SLPV-GKLFCFVLFGLVWFCLLLYK  518 (519)
Q Consensus       495 ~~~~-~~~~~~~~l~~~~~~lg~~k  518 (519)
                      ++.. ....++..+|.++..+|++.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~   95 (111)
T 2l6j_A           71 AEHVAIRSKLQYRLELAQGAVGSVQ   95 (111)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhHh
Confidence            4222 22467889999999999765

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.69  E-value=3.8e-07  Score=71.54  Aligned_cols=111  Identities=15%  Similarity=0.183  Sum_probs=93.2

Q ss_pred             cccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 010063          216 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  295 (519)
Q Consensus       216 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  295 (519)
                      .+++++|+.+|+++.+.       .++.   +.  +|.+|...+.+++|+.+|+++.+.          ....++++||.
T Consensus         8 ~~d~~~A~~~~~~aa~~-------g~~~---a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~   65 (138)
T 1klx_A            8 KKDLKKAIQYYVKACEL-------NEMF---GC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGD   65 (138)
T ss_dssp             HHHHHHHHHHHHHHHHT-------TCTT---HH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHcC-------CCHh---hh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHH
Confidence            35789999999999764       1221   22  899999999999999999999864          23678999999


Q ss_pred             HHHh----CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Q 010063          296 LFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRV  358 (519)
Q Consensus       296 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  358 (519)
                      +|..    .+++++|+.+|+++.+.          ....++.+||.+|..    .+++++|+.+|+++.+.
T Consensus        66 ~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           66 FYENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            9998    89999999999999873          234578999999999    99999999999999875

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.68  E-value=1.1e-07  Score=70.02  Aligned_cols=91  Identities=14%  Similarity=0.005  Sum_probs=71.8

Q ss_pred             ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 010063          411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  490 (519)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  490 (519)
                      .|....++..+|.+|...|++++|+.+|++++++        .|....++..+|.+|...|++++|+..|++++++....
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            3555678999999999999999999999999985        35566789999999999999999999999999987543


Q ss_pred             cCCCCCcchhhHHHHHHHHHHHHhhhc
Q 010063          491 FGKDSLPVGKLFCFVLFGLVWFCLLLY  517 (519)
Q Consensus       491 ~~~~~~~~~~~~~~~~l~~~~~~lg~~  517 (519)
                           ++.   .....+...+...+..
T Consensus        75 -----~~~---~~~~~l~~~l~~~~~~   93 (100)
T 3ma5_A           75 -----GTQ---KDLSELQDAKLKAEGL   93 (100)
T ss_dssp             -----SCH---HHHHHHHHHHHHHHTT
T ss_pred             -----Cch---hHHHHHHHHHHHcccc
Confidence                 222   2344666666666543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.66  E-value=3.1e-07  Score=72.10  Aligned_cols=110  Identities=17%  Similarity=0.131  Sum_probs=91.1

Q ss_pred             CCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 010063          343 GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA  422 (519)
Q Consensus       343 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  422 (519)
                      +++++|+.+|+++.+.       + ++ .   +.  +|.+|...+..++|+.+|+++.+.       .   ...+++++|
T Consensus         9 ~d~~~A~~~~~~aa~~-------g-~~-~---a~--lg~~y~~g~~~~~A~~~~~~Aa~~-------g---~~~a~~~Lg   64 (138)
T 1klx_A            9 KDLKKAIQYYVKACEL-------N-EM-F---GC--LSLVSNSQINKQKLFQYLSKACEL-------N---SGNGCRFLG   64 (138)
T ss_dssp             HHHHHHHHHHHHHHHT-------T-CT-T---HH--HHHHTCTTSCHHHHHHHHHHHHHT-------T---CHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcC-------C-CH-h---hh--HHHHHHcCCCHHHHHHHHHHHHcC-------C---CHHHHHHHH
Confidence            4678999999998875       2 11 1   11  899999999999999999999863       2   346889999


Q ss_pred             HHHHh----ccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh----cCChHHHHHHHHHHHHH
Q 010063          423 ASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYI  486 (519)
Q Consensus       423 ~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~  486 (519)
                      .+|..    .+++++|+.+|+++.+.          ....++.+||.+|..    .+++++|..+|+++.+.
T Consensus        65 ~~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           65 DFYENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            99998    89999999999999872          235678999999999    89999999999999873

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.64  E-value=1.2e-07  Score=71.93  Aligned_cols=84  Identities=10%  Similarity=0.091  Sum_probs=72.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHH
Q 010063          135 NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYS  214 (519)
Q Consensus       135 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  214 (519)
                      ++|+..++++++.          .|..+.++..+|.++...|++++|+..+++++...       |....++..+|.++.
T Consensus         2 ~~a~~~~~~al~~----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~   64 (115)
T 2kat_A            2 QAITERLEAMLAQ----------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-------PTYSVAWKWLGKTLQ   64 (115)
T ss_dssp             CCHHHHHHHHHTT----------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHh----------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHH
Confidence            4578888888876          66677899999999999999999999999999875       334556899999999


Q ss_pred             ccccHHHHHHHHHHHHHHHHH
Q 010063          215 TLENYEKSMLVYQRVINVLES  235 (519)
Q Consensus       215 ~~g~~~~A~~~~~~al~~~~~  235 (519)
                      ..|++++|+..|++++.+...
T Consensus        65 ~~g~~~~A~~~~~~al~~~~~   85 (115)
T 2kat_A           65 GQGDRAGARQAWESGLAAAQS   85 (115)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhccc
Confidence            999999999999999988654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.63  E-value=3.7e-06  Score=81.41  Aligned_cols=168  Identities=9%  Similarity=0.000  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHH
Q 010063          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN---------AEEAVELYKKALRVI  359 (519)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~  359 (519)
                      .++.+-..+.+.|+.++|+.+|+++.+.     | -.|+. .+|+.+-..+...+.         .++|.++|+++... 
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-----G-v~pd~-~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-   99 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRN-----G-VQLSQ-YHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-   99 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHH-----T-CCCCH-HHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCCH-hHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-
Confidence            4556668889999999999999998763     1 23333 367777777765443         67888888876543 


Q ss_pred             HhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHH
Q 010063          360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  439 (519)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  439 (519)
                          ...|+    ..+++.+...|.+.|++++|..++++....      .-.|+ ..+|..+-..|.+.|+.++|.++|+
T Consensus       100 ----G~~Pd----~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~------g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~  164 (501)
T 4g26_A          100 ----KVVPN----EATFTNGARLAVAKDDPEMAFDMVKQMKAF------GIQPR-LRSYGPALFGFCRKGDADKAYEVDA  164 (501)
T ss_dssp             ----TCCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCCCC-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCc-cceehHHHHHHHHCCCHHHHHHHHH
Confidence                12232    236688999999999999999999987542      12333 4578888999999999999999999


Q ss_pred             HHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063          440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (519)
Q Consensus       440 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (519)
                      +..+.      .-.|+ ..++..|-..|.+.|+.++|.+++++..+.
T Consensus       165 ~M~~~------G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          165 HMVES------EVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHHHT------TCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhc------CCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            98762      22333 457889999999999999999999988653

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.62  E-value=0.0001  Score=71.29  Aligned_cols=310  Identities=9%  Similarity=-0.052  Sum_probs=168.4

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhhhhhcC
Q 010063          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGD-LKFVQSLLDMMSGIVDSLK  196 (519)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~  196 (519)
                      ++.+++.+...+-.|+++.+..+|++++..          .| ...++......-...++ .+.....|+.++...   +
T Consensus        14 aR~vyer~l~~~P~~~~e~~~~iferal~~----------~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~v---g   79 (493)
T 2uy1_A           14 PSAIMEHARRLYMSKDYRSLESLFGRCLKK----------SY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQF---E   79 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHSTT----------CC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHS---T
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHhcc----------CC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHc---C
Confidence            344555665566669999999999999874          33 34455555555555553 355667778777654   2


Q ss_pred             CCchHHHHHHHHHHHHHH----ccccHHHHHHHHHHHHHHHHHhcCCCCHHHHH--------------------------
Q 010063          197 DDEPLLDAILLHMGSMYS----TLENYEKSMLVYQRVINVLESRYGKTSILLVT--------------------------  246 (519)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------------------  246 (519)
                      .+ +....+|......+.    .+|+.+.+...|++++..-    ..+......                          
T Consensus        80 ~d-~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P----~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~  154 (493)
T 2uy1_A           80 NY-WDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP----MGSLSELWKDFENFELELNKITGKKIVGDTLPIFQ  154 (493)
T ss_dssp             TC-TTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC----CTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             CC-cccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh----hhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHH
Confidence            11 222233444444433    3567888888888887620    000000000                          


Q ss_pred             -------------------HHHHHHHHHhhcCC---------HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 010063          247 -------------------SLLGMAKVLGSIGR---------AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFI  298 (519)
Q Consensus       247 -------------------~~~~la~~~~~~g~---------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  298 (519)
                                         .+...  +-...++         .......|++++..        .|.....+...+..+.
T Consensus       155 ~ar~~y~~~~~~~~~~s~~~W~~y--~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~--------~p~~~~lW~~ya~~~~  224 (493)
T 2uy1_A          155 SSFQRYQQIQPLIRGWSVKNAARL--IDLEMENGMKLGGRPHESRMHFIHNYILDS--------FYYAEEVYFFYSEYLI  224 (493)
T ss_dssp             HHHHHHHHHHHHHHTCSHHHHHHH--HHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--------TTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHH--HHHHhcCCccCcchhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHH
Confidence                               01111  1111121         23344566666654        2444677888888899


Q ss_pred             hCCCHHHHHHHHHHHHHHHHHhc---------CC-----------------------CChhHHHHHHHHHHHHHHCCCHH
Q 010063          299 KEGKAVDAESVFSRILKIYTKVY---------GE-----------------------NDGRVGMAMCSLAHAKCANGNAE  346 (519)
Q Consensus       299 ~~g~~~~A~~~~~~al~~~~~~~---------~~-----------------------~~~~~~~~~~~la~~~~~~g~~~  346 (519)
                      ..|+.++|...|++++.. ....         ..                       ........+...+....+.+..+
T Consensus       225 ~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~  303 (493)
T 2uy1_A          225 GIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLE  303 (493)
T ss_dssp             HTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHH
Confidence            999999999999999875 2100         00                       00001122333333444455666


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH
Q 010063          347 EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG-RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY  425 (519)
Q Consensus       347 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  425 (519)
                      .|...|+++ ..       .+..   ...+...|.+....+ +.+.|..+|+.+++..     ++.+.   .+...+...
T Consensus       304 ~AR~i~~~A-~~-------~~~~---~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-----~~~~~---~~~~yid~e  364 (493)
T 2uy1_A          304 LFRKLFIEL-GN-------EGVG---PHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-----PDSTL---LKEEFFLFL  364 (493)
T ss_dssp             HHHHHHHHH-TT-------SCCC---HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-----TTCHH---HHHHHHHHH
T ss_pred             HHHHHHHHh-hC-------CCCC---hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----CCCHH---HHHHHHHHH
Confidence            666666666 21       1111   123333444444444 5777777777777642     22333   233345556


Q ss_pred             HhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010063          426 SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  488 (519)
Q Consensus       426 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  488 (519)
                      ...|+.+.|...|+++.         .   ....+......-...|+.+.+...++++++...
T Consensus       365 ~~~~~~~~aR~l~er~~---------k---~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~  415 (493)
T 2uy1_A          365 LRIGDEENARALFKRLE---------K---TSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK  415 (493)
T ss_dssp             HHHTCHHHHHHHHHHSC---------C---BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHH---------H---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence            66777777777776651         1   123344445555566888888888888887553

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.59  E-value=4.2e-06  Score=81.00  Aligned_cols=166  Identities=12%  Similarity=-0.009  Sum_probs=125.5

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCC---------HHHHHHHHHHHHHHHH
Q 010063          248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK---------AVDAESVFSRILKIYT  318 (519)
Q Consensus       248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~~  318 (519)
                      +..+-..+.+.|++++|.++|+++.+.       .-.....+|+.+-.++...+.         .++|..+|++....  
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~-------Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~--   99 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRN-------GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD--   99 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHH-------TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh--
Confidence            455668889999999999999998764       122235677777777765544         67788888876542  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010063          319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  398 (519)
Q Consensus       319 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  398 (519)
                          .-.|+. .+++.+...|.+.|++++|..+++++.+.     ...|+    ..+|+.+...|.+.|+.++|.+++++
T Consensus       100 ----G~~Pd~-~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g~~Pd----~~tyn~lI~~~~~~g~~~~A~~l~~~  165 (501)
T 4g26_A          100 ----KVVPNE-ATFTNGARLAVAKDDPEMAFDMVKQMKAF-----GIQPR----LRSYGPALFGFCRKGDADKAYEVDAH  165 (501)
T ss_dssp             ----TCCCCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCc----cceehHHHHHHHHCCCHHHHHHHHHH
Confidence                123444 48899999999999999999999987653     12222    34668889999999999999999998


Q ss_pred             HHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063          399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (519)
Q Consensus       399 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (519)
                      ..+.      .-.|+ ..++..+-..|.+.|+.++|.+++++..+
T Consensus       166 M~~~------G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          166 MVES------EVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHHT------TCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhc------CCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            7652      12333 35788899999999999999999998765

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.58  E-value=6.3e-07  Score=65.82  Aligned_cols=71  Identities=14%  Similarity=0.250  Sum_probs=62.4

Q ss_pred             ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (519)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (519)
                      .|....++..+|.++...|++++|+..|++++++        .|....++.++|.+|...|++++|+..+++++++...
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            4566789999999999999999999999999986        3555568999999999999999999999999998665

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.38  E-value=0.00022  Score=65.54  Aligned_cols=212  Identities=9%  Similarity=0.002  Sum_probs=150.1

Q ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS-IGRAKKAVEIYHRVITILELNRGTE  282 (519)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~  282 (519)
                      .+...+|..|...|++++-..++..........   .....+.....+-..+.. -+..+.-++...++++..+..    
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~----   92 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE----   92 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----
Confidence            357899999999999999888887665443222   223445555555555554 355666677777777776542    


Q ss_pred             ChhhHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063          283 SADLVL--PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (519)
Q Consensus       283 ~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (519)
                      ......  .-..+|..|...|+|.+|...+.+.++-+++.  ++......++.....+|...+++.++...+.++.....
T Consensus        93 ~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~  170 (394)
T 3txn_A           93 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN  170 (394)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence            122222  34589999999999999999999999887664  23456778888889999999999999999999998876


Q ss_pred             hhccCCCCchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccC
Q 010063          361 DSNYMSLDDSIMENMRIDLAELLH-IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN  430 (519)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  430 (519)
                      ..   .+++...+.....-|..+. ..++|.+|..+|-++..-+...   ..+....+...++.+-...++
T Consensus       171 ai---~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~---~~~~~~~~lkYlvL~aLl~~~  235 (394)
T 3txn_A          171 AI---YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV---DSVKALTSLKYMLLCKIMLGQ  235 (394)
T ss_dssp             HS---CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTTC
T ss_pred             cC---CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHcCC
Confidence            52   3556666777777888888 8999999999999987655432   234333333344444444444

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.35  E-value=0.00023  Score=65.44  Aligned_cols=188  Identities=13%  Similarity=0.080  Sum_probs=139.2

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~  324 (519)
                      .+...+|..|...|++++-.+++......+...   .....+....++-..+.. -+..+.-++...++++.++..    
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~----   92 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE----   92 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----
Confidence            466789999999999999988887765554332   123334445555555544 355666677888888776542    


Q ss_pred             ChhHHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063          325 DGRVGM--AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (519)
Q Consensus       325 ~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (519)
                      ......  .-..+|.+|...|+|.+|.+.+.+..+..++.    .+......++..-..+|...+++.++...+.++...
T Consensus        93 ~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~----dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~  168 (394)
T 3txn_A           93 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL----DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT  168 (394)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS----SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc----ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            223333  34589999999999999999999998887652    346677888888999999999999999999999988


Q ss_pred             HHHhhCCCChh-HHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHH
Q 010063          403 TEKYKGKEHPS-FVTHLLNLAASYS-RSKNFVEAERLLRICLDIMT  446 (519)
Q Consensus       403 ~~~~~~~~~~~-~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~  446 (519)
                      .....  .+|. .+.....-|..+. ..++|.+|..+|-++..-+.
T Consensus       169 ~~ai~--~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~  212 (394)
T 3txn_A          169 ANAIY--CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD  212 (394)
T ss_dssp             HHHSC--CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             hccCC--CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence            76542  3443 3445556677888 89999999999999876554

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.32  E-value=8.8e-05  Score=71.72  Aligned_cols=284  Identities=12%  Similarity=0.045  Sum_probs=159.8

Q ss_pred             HcC-ChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHH
Q 010063          130 MMG-NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH  208 (519)
Q Consensus       130 ~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (519)
                      ..| +++.|...|++++...          |.               |+++.+..+|++++...    + +..+   |..
T Consensus         6 ~~~~~i~~aR~vyer~l~~~----------P~---------------~~~e~~~~iferal~~~----p-s~~L---W~~   52 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHARRLY----------MS---------------KDYRSLESLFGRCLKKS----Y-NLDL---WML   52 (493)
T ss_dssp             ------CCHHHHHHHHHHHH----------HT---------------TCHHHHHHHHHHHSTTC----C-CHHH---HHH
T ss_pred             HcCcchHHHHHHHHHHHHHC----------CC---------------CCHHHHHHHHHHHhccC----C-CHHH---HHH
Confidence            356 4888999999988772          21               88999999999998753    1 2222   333


Q ss_pred             HHHHHHccc-cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh----hcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063          209 MGSMYSTLE-NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG----SIGRAKKAVEIYHRVITILELNRGTES  283 (519)
Q Consensus       209 l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (519)
                      ........+ ..+.....|+.++...    |.+ +.....+......+.    ..|+.+.+..+|++++.+-    ..+.
T Consensus        53 Y~~f~~~~~~~~~~i~~~fe~al~~v----g~d-~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P----~~~~  123 (493)
T 2uy1_A           53 YIEYVRKVSQKKFKLYEVYEFTLGQF----ENY-WDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP----MGSL  123 (493)
T ss_dssp             HHHHHHHHC----CTHHHHHHHHHHS----TTC-TTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC----CTTH
T ss_pred             HHHHHHHhCchHHHHHHHHHHHHHHc----CCC-cccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh----hhhH
Confidence            333333333 2344566677776642    322 212344444444332    2466778888888887520    0000


Q ss_pred             hhhHH---------------------------------------------HHHHHHHHHHhCCC---------HHHHHHH
Q 010063          284 ADLVL---------------------------------------------PLFSLGSLFIKEGK---------AVDAESV  309 (519)
Q Consensus       284 ~~~~~---------------------------------------------~~~~la~~~~~~g~---------~~~A~~~  309 (519)
                      .....                                             .+...  +-...++         .+.....
T Consensus       124 ~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y--~~~E~~~~~~~~~~~~~~Rv~~~  201 (493)
T 2uy1_A          124 SELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARL--IDLEMENGMKLGGRPHESRMHFI  201 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHH--HHHHHTCTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHH--HHHHhcCCccCcchhhHHHHHHH
Confidence            00000                                             11111  1111121         2234455


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc--------CC---------------
Q 010063          310 FSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY--------MS---------------  366 (519)
Q Consensus       310 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~---------------  366 (519)
                      |++++...        |.....|...+..+...|+.++|...|++++.. .....        ..               
T Consensus       202 ye~al~~~--------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~  272 (493)
T 2uy1_A          202 HNYILDSF--------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMG  272 (493)
T ss_dssp             HHHHHHHT--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC--
T ss_pred             HHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhh
Confidence            66655532        333567788888899999999999999999976 32100        00               


Q ss_pred             -------CCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcc-CHHHHHHHH
Q 010063          367 -------LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK-NFVEAERLL  438 (519)
Q Consensus       367 -------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~  438 (519)
                             ..+.....++...+....+.++.+.|..+|+++ .    .  +.  .....+...|.+....+ +.+.|...|
T Consensus       273 ~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~----~--~~--~~~~v~i~~A~lE~~~~~d~~~ar~if  343 (493)
T 2uy1_A          273 EAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G----N--EG--VGPHVFIYCAFIEYYATGSRATPYNIF  343 (493)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T----T--SC--CCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred             ccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h----C--CC--CChHHHHHHHHHHHHHCCChHHHHHHH
Confidence                   001111233455555566677888888888887 2    1  11  12335555566655555 699999999


Q ss_pred             HHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010063          439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  483 (519)
Q Consensus       439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (519)
                      +.++...     ++.|..   +...+......|+.+.|...|+++
T Consensus       344 e~al~~~-----~~~~~~---~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          344 SSGLLKH-----PDSTLL---KEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHC-----TTCHHH---HHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHC-----CCCHHH---HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999842     334443   344567778889999998887775

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.31  E-value=1.9e-06  Score=63.01  Aligned_cols=88  Identities=13%  Similarity=0.134  Sum_probs=68.8

Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063          249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL-PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  327 (519)
Q Consensus       249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  327 (519)
                      ...|..+...|++++|+..++++++.        .|.... ++..+|.++...|++++|+..|++++++        .|.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~   67 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--------NPD   67 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCC
Confidence            46788999999999999999999987        455567 8999999999999999999999999986        233


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063          328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (519)
Q Consensus       328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (519)
                      ...++.+        +.+.++...|+++.....
T Consensus        68 ~~~~~~~--------~~~~~a~~~~~~~~~~~p   92 (99)
T 2kc7_A           68 SPALQAR--------KMVMDILNFYNKDMYNQL   92 (99)
T ss_dssp             STHHHHH--------HHHHHHHHHHCCTTHHHH
T ss_pred             cHHHHHH--------HHHHHHHHHHHHHhccCc
Confidence            2223322        556777777777766643

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.29  E-value=2.2e-06  Score=62.70  Aligned_cols=87  Identities=14%  Similarity=0.174  Sum_probs=68.3

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVA-ILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      +..+..+...|++++|+..++++++.          .|..+. ++..+|.++...|++++|+..|++++.+.    ++.+
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~   69 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQT----------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN----PDSP   69 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH----------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTST
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH----------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCcH
Confidence            46778889999999999999999987          666677 99999999999999999999999998875    2222


Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVL  233 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  233 (519)
                      ..   +..        +.+.+++..|+++....
T Consensus        70 ~~---~~~--------~~~~~a~~~~~~~~~~~   91 (99)
T 2kc7_A           70 AL---QAR--------KMVMDILNFYNKDMYNQ   91 (99)
T ss_dssp             HH---HHH--------HHHHHHHHHHCCTTHHH
T ss_pred             HH---HHH--------HHHHHHHHHHHHHhccC
Confidence            22   211        66777777777766553

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.22  E-value=1.8e-05  Score=58.21  Aligned_cols=80  Identities=15%  Similarity=0.144  Sum_probs=65.2

Q ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (519)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (519)
                      .+.+|..++..|+|..|+.+|++|++....... .......++..+|.++..+|++++|+.++++++++        .|.
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--------~P~   78 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------DPE   78 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCC
Confidence            678999999999999999999999988654211 12345778899999999999999999999999987        444


Q ss_pred             hHHHHHHHH
Q 010063          286 LVLPLFSLG  294 (519)
Q Consensus       286 ~~~~~~~la  294 (519)
                      ...+..+++
T Consensus        79 ~~~~~~n~~   87 (104)
T 2v5f_A           79 HQRANGNLK   87 (104)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHhhHH
Confidence            455666665

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.16  E-value=0.00027  Score=61.13  Aligned_cols=83  Identities=17%  Similarity=0.143  Sum_probs=69.7

Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCChh--hHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHhcCCCChh-HHHH
Q 010063          260 RAKKAVEIYHRVITILELNRGTESAD--LVLPLFSLGSLFIKE-----GKAVDAESVFSRILKIYTKVYGENDGR-VGMA  331 (519)
Q Consensus       260 ~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~  331 (519)
                      ...+|...+++++++        +|.  ...++..+|.+|...     |+.++|..+|++++++        +|. ...+
T Consensus       178 ~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--------nP~~~id~  241 (301)
T 3u64_A          178 TVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--------CSAHDPDH  241 (301)
T ss_dssp             HHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--------CCTTCSHH
T ss_pred             hHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--------CCCCCchH
Confidence            357788889999988        344  567999999999995     9999999999999997        343 2557


Q ss_pred             HHHHHHHHHH-CCCHHHHHHHHHHHHHH
Q 010063          332 MCSLAHAKCA-NGNAEEAVELYKKALRV  358 (519)
Q Consensus       332 ~~~la~~~~~-~g~~~~A~~~~~~al~~  358 (519)
                      +...|..++. .|++++|..++++++..
T Consensus       242 ~v~YA~~l~~~~gd~~~a~~~L~kAL~a  269 (301)
T 3u64_A          242 HITYADALCIPLNNRAGFDEALDRALAI  269 (301)
T ss_dssp             HHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence            7788999888 59999999999999987

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.16  E-value=9.2e-05  Score=54.40  Aligned_cols=71  Identities=20%  Similarity=0.136  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      +.-.+.+|..+...|+|..|+.+|++|++....... ..+....++..+|.++.++|++++|+.++++++++
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            456778999999999999999999999987653311 12456678999999999999999999999999987

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.14  E-value=9e-05  Score=66.93  Aligned_cols=134  Identities=14%  Similarity=0.044  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHcCC---hhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhc---C-ChHHHHHHHHHHHhhhh
Q 010063          121 LFNEVKSMIMMGN---KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI---G-DLKFVQSLLDMMSGIVD  193 (519)
Q Consensus       121 l~~~~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-~~~~A~~~~~~~~~~~~  193 (519)
                      ++-++..++..++   ..+|+.+|++++++          +|..+.++..++.+|...   + ........+..+.....
T Consensus       199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~l----------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~  268 (372)
T 3ly7_A          199 NFYQAHDYLLHGDDKSLNRASELLGEIVQS----------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV  268 (372)
T ss_dssp             HHHHHHHHHHHCSHHHHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence            4445555555444   58999999999999          888888888777777532   1 11122222233332221


Q ss_pred             hcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010063          194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT  273 (519)
Q Consensus       194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  273 (519)
                      . ....|..+.++..++..+...|++++|+..+++|+.+.     ++    ..++..+|.++...|++++|++.|++|+.
T Consensus       269 a-~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-----~s----~~a~~llG~~~~~~G~~~eA~e~~~~Alr  338 (372)
T 3ly7_A          269 T-LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-----MS----WLNYVLLGKVYEMKGMNREAADAYLTAFN  338 (372)
T ss_dssp             T-CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             h-cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            1 12224445567788888888899999999999999972     22    45678899999999999999999999999


Q ss_pred             H
Q 010063          274 I  274 (519)
Q Consensus       274 ~  274 (519)
                      +
T Consensus       339 L  339 (372)
T 3ly7_A          339 L  339 (372)
T ss_dssp             H
T ss_pred             c
Confidence            8

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.12  E-value=0.00026  Score=63.94  Aligned_cols=133  Identities=12%  Similarity=0.043  Sum_probs=91.9

Q ss_pred             HHHHHHHHc---cccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc---C-CHHHHHHHHHHHHHHHHHhc
Q 010063          207 LHMGSMYST---LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---G-RAKKAVEIYHRVITILELNR  279 (519)
Q Consensus       207 ~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g-~~~~A~~~~~~al~~~~~~~  279 (519)
                      +..|..+..   ...+.+|+.+|++++++        +|..+.++..++.+|...   + .......-+.+++...... 
T Consensus       200 ~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~-  270 (372)
T 3ly7_A          200 FYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL-  270 (372)
T ss_dssp             HHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc-
Confidence            334444443   34568999999999987        354455666666665421   1 1112223333444422211 


Q ss_pred             CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                       ...+..+.++..++..+...|++++|+..+++++.+       + +. ..++..+|.++...|++++|++.|++|+.+
T Consensus       271 -~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-------n-~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          271 -PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-------E-MS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             -GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------C-CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-------C-CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence             234566788888888888889999999999999997       2 33 347788999999999999999999999998

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.02  E-value=0.0014  Score=56.63  Aligned_cols=85  Identities=11%  Similarity=0.105  Sum_probs=70.2

Q ss_pred             cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc-----CCHHHHHHHHHHHHHHHHHhcCCCChh-hHHHHH
Q 010063          218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI-----GRAKKAVEIYHRVITILELNRGTESAD-LVLPLF  291 (519)
Q Consensus       218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~  291 (519)
                      ...+|...+++++++-      .......++..+|.+|...     |+.++|..+|++++++        +|. ...++.
T Consensus       178 ~l~~A~a~lerAleLD------P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--------nP~~~id~~v  243 (301)
T 3u64_A          178 TVHAAVMMLERACDLW------PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--------CSAHDPDHHI  243 (301)
T ss_dssp             HHHHHHHHHHHHHHHC------TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--------CCTTCSHHHH
T ss_pred             hHHHHHHHHHHHHHhC------CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--------CCCCCchHHH
Confidence            4567888888888872      1223577899999999995     9999999999999998        454 378888


Q ss_pred             HHHHHHHh-CCCHHHHHHHHHHHHHH
Q 010063          292 SLGSLFIK-EGKAVDAESVFSRILKI  316 (519)
Q Consensus       292 ~la~~~~~-~g~~~~A~~~~~~al~~  316 (519)
                      ..|..+.. .|++++|..++++++..
T Consensus       244 ~YA~~l~~~~gd~~~a~~~L~kAL~a  269 (301)
T 3u64_A          244 TYADALCIPLNNRAGFDEALDRALAI  269 (301)
T ss_dssp             HHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence            89999888 59999999999999985

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.97  E-value=0.0003  Score=54.91  Aligned_cols=128  Identities=15%  Similarity=0.035  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 010063          330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  409 (519)
Q Consensus       330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  409 (519)
                      .++..-...+...|.|+.|+.....++.+..... ....+.....++..+|.+++..|+|..|...|++++...+.+...
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~-~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNP-ELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHST-TSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCc-ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            3455566778889999999999999888865520 011245567788999999999999999999999999987643211


Q ss_pred             -----------------CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Q 010063          410 -----------------EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL  467 (519)
Q Consensus       410 -----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  467 (519)
                                       +.+...+..+.++.||.+.|++++|+..++..         |.......+-..||..|
T Consensus       100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I---------p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI---------PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS---------CGGGCCHHHHHHHHHHC
T ss_pred             CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC---------CchhcCHHHHHHHHHHh
Confidence                             11223467889999999999999999887642         12233344455666654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.93  E-value=0.00011  Score=52.50  Aligned_cols=67  Identities=13%  Similarity=0.100  Sum_probs=58.5

Q ss_pred             hhhHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          284 ADLVLPLFSLGSLFIKEGK---AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      |..+..+..+|.+++..++   .++|..++++++++        +|....++..+|..++..|+|++|+.+++++++.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4556788889999876665   79999999999996        6777789999999999999999999999998875

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.85  E-value=0.015  Score=55.10  Aligned_cols=231  Identities=13%  Similarity=0.044  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhc
Q 010063          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (519)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (519)
                      ..+...+..+..+. .|+++.|++.+-..-+.    .....+.+....++..+...+...|+++...+.+.......   
T Consensus        15 ~~~~~~~~~~~~l~-~~~~~~a~e~ll~lEK~----~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr---   86 (445)
T 4b4t_P           15 QILKEEFPKIDSLA-QNDCNSALDQLLVLEKK----TRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH---   86 (445)
T ss_dssp             -------------C-HHHHHHHHHHHHHHHHH----HSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT---
T ss_pred             HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH----hhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh---
Confidence            33444444454443 36778887754322221    12244556667778888889999999998877665443322   


Q ss_pred             CCCchHHHHHHHHHHHHHH-ccccHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010063          196 KDDEPLLDAILLHMGSMYS-TLENYEKSMLVYQRVINVLESRYGKT---SILLVTSLLGMAKVLGSIGRAKKAVEIYHRV  271 (519)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  271 (519)
                      +........ ......-+. .....+.  ......+..........   ....+.....++.+|...|++.+|...+...
T Consensus        87 ~qlk~ai~~-~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l  163 (445)
T 4b4t_P           87 GQLKLSIQY-MIQKVMEYLKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCEL  163 (445)
T ss_dssp             TTSHHHHHH-HHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hhhHHHHHH-HHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            222222222 122111121 1222111  11112222111111111   1235667788999999999999999999887


Q ss_pred             HHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHCCCHHHHHH
Q 010063          272 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEEAVE  350 (519)
Q Consensus       272 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~  350 (519)
                      ..-.  ....+.......+.....+|...+++.+|...+.++.......  ..+|. ....+...|.++...++|.+|-.
T Consensus       164 ~~Et--~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~~~~~~~~~~~~~e~~y~~a~~  239 (445)
T 4b4t_P          164 QVET--YGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN--PKYESLKLEYYNLLVKISLHKREYLEVAQ  239 (445)
T ss_dssp             HHHH--CSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             HHHH--HhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            5432  1112334557788888999999999999999999986544332  23343 45567788999999999999999


Q ss_pred             HHHHHHHHHHh
Q 010063          351 LYKKALRVIKD  361 (519)
Q Consensus       351 ~~~~al~~~~~  361 (519)
                      +|.++......
T Consensus       240 ~y~e~~~~~~~  250 (445)
T 4b4t_P          240 YLQEIYQTDAI  250 (445)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHhcccc
Confidence            99999887654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.83  E-value=0.00057  Score=53.31  Aligned_cols=107  Identities=11%  Similarity=0.065  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCc-
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE-  199 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-  199 (519)
                      +++.+..++..|.|+.|+-+...++.+..... ..........++..+|.+++..|+|..|...|++++...+.+.... 
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~-~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNP-ELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHST-TSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCc-ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            77888899999999999999999888754311 0112345678899999999999999999999999988776532221 


Q ss_pred             -----------------hHHHHHHHHHHHHHHccccHHHHHHHHHH
Q 010063          200 -----------------PLLDAILLHMGSMYSTLENYEKSMLVYQR  228 (519)
Q Consensus       200 -----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  228 (519)
                                       +.-.++.+.++.||...|++++|+..++.
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence                             11235678999999999999999998764

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.83  E-value=0.001  Score=51.53  Aligned_cols=68  Identities=10%  Similarity=0.050  Sum_probs=59.1

Q ss_pred             hhhHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          284 ADLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIYTKVYGENDG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       284 ~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      +....+.+++|+++...+   +.++++.+++..++.       +.| ....+++++|..+.+.|+|++|..+++.++++
T Consensus        29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i  100 (152)
T 1pc2_A           29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  100 (152)
T ss_dssp             CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            346789999999999988   666999999998884       235 56788999999999999999999999999998

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.80  E-value=0.00018  Score=51.35  Aligned_cols=64  Identities=11%  Similarity=0.060  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063          245 VTSLLGMAKVLGSIGR---AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (519)
                      ...+..+|.+++..++   .++|..++++++++        +|....++..+|..+...|+|++|+.+++++++.
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            5567778888876665   79999999999998        6788899999999999999999999999999874

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.72  E-value=0.0012  Score=51.23  Aligned_cols=83  Identities=13%  Similarity=0.028  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHhcCCCCh-hhHHHHHHHH
Q 010063          219 YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG---RAKKAVEIYHRVITILELNRGTESA-DLVLPLFSLG  294 (519)
Q Consensus       219 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la  294 (519)
                      ...+.+.|.+.+..     +   +....+.+++|+++...+   +.++++.+++..++.       +.| ....+++++|
T Consensus        14 l~~~~~~y~~e~~~-----~---~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LA   78 (152)
T 1pc2_A           14 LLKFEKKFQSEKAA-----G---SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLA   78 (152)
T ss_dssp             HHHHHHHHHHHHHT-----T---CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcc-----C---CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHH
Confidence            44455555555431     1   123678889999999988   677999999998875       224 5678999999


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHH
Q 010063          295 SLFIKEGKAVDAESVFSRILKI  316 (519)
Q Consensus       295 ~~~~~~g~~~~A~~~~~~al~~  316 (519)
                      ..+++.|+|++|..++++++++
T Consensus        79 v~~~kl~~Y~~A~~y~~~lL~i  100 (152)
T 1pc2_A           79 VGNYRLKEYEKALKYVRGLLQT  100 (152)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHhc
Confidence            9999999999999999999997

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.55  E-value=0.027  Score=53.31  Aligned_cols=218  Identities=12%  Similarity=0.039  Sum_probs=134.0

Q ss_pred             cCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010063          175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV  254 (519)
Q Consensus       175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  254 (519)
                      .|+++.|++.+....+... .+.+.+....++..+...+...|+++...+++.-..    ...+.- +...........-
T Consensus        29 ~~~~~~a~e~ll~lEK~~r-~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls----kkr~ql-k~ai~~~V~~~~~  102 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTR-QASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS----KKHGQL-KLSIQYMIQKVME  102 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHS-SSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH----TTTTTS-HHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhh-hccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH----HHhhhh-HHHHHHHHHHHHH
Confidence            4677888876655444332 245555566667888888999999987766554221    111211 2111111111111


Q ss_pred             Hh-hcCCHHHHHHHHHHHHHHHHHhcCCC---ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC-ChhHH
Q 010063          255 LG-SIGRAKKAVEIYHRVITILELNRGTE---SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN-DGRVG  329 (519)
Q Consensus       255 ~~-~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~  329 (519)
                      +. .....+.  ......++.........   ....+.....|+.+|...|++.+|...+.....-   .++.. .....
T Consensus       103 ~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~E---t~~~~~~~~kv  177 (445)
T 4b4t_P          103 YLKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVE---TYGSMEMSEKI  177 (445)
T ss_dssp             HHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HCSSSCHHHHH
T ss_pred             HHhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---HHhcccHHHHH
Confidence            11 1222111  11112222211111111   1124566678999999999999999999887542   22322 23456


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 010063          330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  406 (519)
Q Consensus       330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  406 (519)
                      ..+.....++...+++.+|...+.++.......   .+.+......+...|.++...++|.+|-.+|.++.......
T Consensus       178 e~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~---~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~  251 (445)
T 4b4t_P          178 QFILEQMELSILKGDYSQATVLSRKILKKTFKN---PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK  251 (445)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc---CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc
Confidence            778888999999999999999999986544432   34455667778889999999999999999999988765443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.81  E-value=0.081  Score=39.36  Aligned_cols=67  Identities=12%  Similarity=0.066  Sum_probs=54.1

Q ss_pred             hhHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          285 DLVLPLFSLGSLFIKEGKAVD---AESVFSRILKIYTKVYGENDG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      ....+.+++|+++....+...   ++.+++..+.       .+.| ..-..++.||..+++.|+|++|..+++..+++
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~-------~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~  103 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-------KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  103 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-------TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            456888999999999887766   5655555443       3335 56778999999999999999999999999998

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.75  E-value=0.063  Score=40.99  Aligned_cols=102  Identities=11%  Similarity=0.025  Sum_probs=76.7

Q ss_pred             HHHHHHHHHcCCh------HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcC
Q 010063          377 IDLAELLHIVGRG------QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG  450 (519)
Q Consensus       377 ~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  450 (519)
                      ..........|+.      ++-++.|++|+..............+..+...|.. ...++.++|.+.|+.++.+      
T Consensus        17 ~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~------   89 (161)
T 4h7y_A           17 LSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN------   89 (161)
T ss_dssp             HHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH------
T ss_pred             HHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH------
Confidence            4455556666887      77778888887755332222344566777777765 5669999999999999985      


Q ss_pred             CCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          451 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       451 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                        |...+.++...|..-.++|+..+|.+.+.+++.+.
T Consensus        90 --hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~  124 (161)
T 4h7y_A           90 --CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG  124 (161)
T ss_dssp             --CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             --hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence              33348888899999999999999999999999843

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.41  E-value=0.039  Score=42.13  Aligned_cols=103  Identities=14%  Similarity=0.183  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHCCCH------HHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010063          331 AMCSLAHAKCANGNA------EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (519)
Q Consensus       331 ~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (519)
                      ++..........|+.      ++-++.|++|+.......  .......+..+...|.. ...++.++|.+.|+.++.+. 
T Consensus        15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k--~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~h-   90 (161)
T 4h7y_A           15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK--YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANC-   90 (161)
T ss_dssp             HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG--GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc--cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHh-
Confidence            444445555555887      788888998887654321  23445566777777765 56699999999999999861 


Q ss_pred             HhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063          405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (519)
Q Consensus       405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (519)
                             ...+.++...|..-.++|+..+|...+.+++.+
T Consensus        91 -------KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~  123 (161)
T 4h7y_A           91 -------KKFAFVHISFAQFELSQGNVKKSKQLLQKAVER  123 (161)
T ss_dssp             -------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             -------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence                   122788888999999999999999999999983

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.33  E-value=0.04  Score=56.54  Aligned_cols=105  Identities=10%  Similarity=-0.072  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (519)
                      .....++.+-..|.+.|+.++|..++.+..+...+...++    ..+|+.+...|...|++++|.++|++..+.      
T Consensus       125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd----vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~------  194 (1134)
T 3spa_A          125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT----LDMYNAVMLGWARQGAFKELVYVLFMVKDA------  194 (1134)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------
T ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC----HhHHHHHHHHHHhCCCHHHHHHHHHHHHHc------
Confidence            3445688999999999999999999988765544433444    668999999999999999999999998653      


Q ss_pred             CCChhhHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHH
Q 010063          281 TESADLVLPLFSLGSLFIKEGKA-VDAESVFSRILKI  316 (519)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~  316 (519)
                       .-.....+|+.+-..+.+.|+. ++|.++++++.+.
T Consensus       195 -G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          195 -GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             -TCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             -CCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence             2233467888888899999984 7888999888763

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.30  E-value=0.07  Score=54.82  Aligned_cols=105  Identities=7%  Similarity=-0.122  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC
Q 010063          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (519)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (519)
                      ....+++.+-..|.+.|+.++|..++.+..+...+..    .....+|+.|...|.+.|+.++|.++|++..+.      
T Consensus       125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~----~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~------  194 (1134)
T 3spa_A          125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK----LLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA------  194 (1134)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT----TCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------
T ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC----CCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc------
Confidence            4566788999999999999999999988765433322    223678999999999999999999999998763      


Q ss_pred             CCChhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
Q 010063          323 ENDGRVGMAMCSLAHAKCANGN-AEEAVELYKKALRV  358 (519)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~  358 (519)
                      .-.|+.. +|+.+...+++.|+ .++|.++++++.+.
T Consensus       195 G~~PDvv-TYntLI~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          195 GLTPDLL-SYAAALQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             TCCCCHH-HHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             CCCCcHH-HHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence            2345544 78888889999998 57888999887654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.29  E-value=0.099  Score=54.13  Aligned_cols=75  Identities=12%  Similarity=0.089  Sum_probs=52.0

Q ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 010063          207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL  286 (519)
Q Consensus       207 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  286 (519)
                      ..+...+...|.+++|+...+.             +..      ........|++++|.+..+..             ..
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~~-------------~~~------~f~~~l~~~~~~~A~~~~~~~-------------~~  680 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISPD-------------QDQ------KFELALKVGQLTLARDLLTDE-------------SA  680 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCC-------------HHH------HHHHHHHHTCHHHHHHHHTTC-------------CC
T ss_pred             HHHHHHHHhCCChHHheecCCC-------------cch------heehhhhcCCHHHHHHHHHhh-------------Cc
Confidence            4556667778888887765532             110      123345678998888774321             22


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010063          287 VLPLFSLGSLFIKEGKAVDAESVFSRI  313 (519)
Q Consensus       287 ~~~~~~la~~~~~~g~~~~A~~~~~~a  313 (519)
                      ...+..+|..+...|+++.|+..|.++
T Consensus       681 ~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          681 EMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            467889999999999999999999886

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.13  E-value=0.067  Score=50.43  Aligned_cols=109  Identities=16%  Similarity=0.097  Sum_probs=88.3

Q ss_pred             hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010063          285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  364 (519)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  364 (519)
                      ....++..+|..|...|++++|.+.|.++...+.     ........+..+..++...+++..+..++.++......   
T Consensus       129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~-----~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~---  200 (429)
T 4b4t_R          129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAI-----STGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK---  200 (429)
T ss_dssp             CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT-----CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc---
Confidence            4456778899999999999999999999887542     22456677888889999999999999999999877654   


Q ss_pred             CCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063          365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (519)
Q Consensus       365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (519)
                       ++++..........|.++...++|.+|...|-++...
T Consensus       201 -~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          201 -GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             -CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence             4556656666677788888999999999999887654

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.90  E-value=0.079  Score=49.94  Aligned_cols=104  Identities=13%  Similarity=0.136  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      ....|..+...|++++|.+.|.++.+..       .........+..+..++...+++..+..++.++....... ++..
T Consensus       134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~-------~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~-~d~~  205 (429)
T 4b4t_R          134 WINLGEYYAQIGDKDNAEKTLGKSLSKA-------ISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG-GDWE  205 (429)
T ss_dssp             CHHHHHHHHHHCCCTTHHHHHHHHHHHH-------TCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC-CCTH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC-CCHH
Confidence            5568899999999999999999987762       2245667788888899999999999999999998877553 3333


Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (519)
                      .........|.++...++|.+|...|..+...
T Consensus       206 ~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          206 RRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence            34455566788888999999999999887654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.84  E-value=0.38  Score=35.79  Aligned_cols=69  Identities=13%  Similarity=0.009  Sum_probs=54.1

Q ss_pred             ChHHHHHHHHHHHHHHhcCChHH---HHHHHHHHHhhhhhcCCCch-HHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063          158 GIEEVAILDIIALGYVYIGDLKF---VQSLLDMMSGIVDSLKDDEP-LLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (519)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (519)
                      ++....+.+.+|+++....+...   ++.+++....      .+.| .....++.+|..+++.|+|++|..+++..+++
T Consensus        31 ~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~------~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~  103 (126)
T 1nzn_A           31 GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP------KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  103 (126)
T ss_dssp             SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT------TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh------cCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            34556788999999999887776   6666655433      2224 56678999999999999999999999999886

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.55  E-value=0.34  Score=50.04  Aligned_cols=25  Identities=8%  Similarity=0.105  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHccccHHHHHHHHHHH
Q 010063          205 ILLHMGSMYSTLENYEKSMLVYQRV  229 (519)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~a  229 (519)
                      .|..+|..+...|+++.|+..|.++
T Consensus       683 ~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          683 KWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            3666777777777777777777654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.16  E-value=0.26  Score=45.67  Aligned_cols=118  Identities=14%  Similarity=0.085  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCC-CCh-----------HHHHHHHHHHHHHHhcCChHHHHH
Q 010063          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGN-KGI-----------EEVAILDIIALGYVYIGDLKFVQS  183 (519)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~  183 (519)
                      ..+..+...+......|+.+.|...+++++.+++.-+-.+. ..+           ....+...++..+...|++.+++.
T Consensus       113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~  192 (388)
T 2ff4_A          113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA  192 (388)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            35566777777777889999999999999987643211110 110           112344567778889999999999


Q ss_pred             HHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC
Q 010063          184 LLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT  240 (519)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  240 (519)
                      .+..+....       |..-.++..+..++...|+..+|+..|++.-......+|-+
T Consensus       193 ~l~~~~~~~-------P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~  242 (388)
T 2ff4_A          193 ELEALTFEH-------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID  242 (388)
T ss_dssp             HHHHHHHHS-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            998877654       44344577888899999999999999999988776655544

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.69  E-value=1.1  Score=45.05  Aligned_cols=123  Identities=12%  Similarity=0.079  Sum_probs=81.2

Q ss_pred             cCC-hHHHHHHHHHHHhhhhhcCCCchHHHHHHHHH---HHHHHccccHHHHHHHHHHHHHHHHHhc---CCCC------
Q 010063          175 IGD-LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM---GSMYSTLENYEKSMLVYQRVINVLESRY---GKTS------  241 (519)
Q Consensus       175 ~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~------  241 (519)
                      .|+ ++.|+.++++.....       |.... +...   +.......+--+|+....++++......   ...+      
T Consensus       261 t~~~~~~a~~~le~L~~~~-------p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~  332 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKD-------PIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL  332 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHC-------GGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhC-------CchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence            445 577888888765532       32221 2221   2122223345577888877775432111   1111      


Q ss_pred             -HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010063          242 -ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI  313 (519)
Q Consensus       242 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  313 (519)
                       +.....+...+..+...|+++-|+.+.++|+..        .|....+|..|+.+|..+|+|+.|+-.+..+
T Consensus       333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence             122345666788888999999999999999987        5777899999999999999999999776654

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=94.61  E-value=2.3  Score=37.83  Aligned_cols=237  Identities=13%  Similarity=0.073  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC
Q 010063          161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT  240 (519)
Q Consensus       161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  240 (519)
                      ..+.+..++.-|...++|++|++++..                     -+..+.+.|++..|.++..-.++.+.+..-+-
T Consensus        34 AHQ~~RTi~~Ry~~~k~y~eAidLL~~---------------------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~   92 (336)
T 3lpz_A           34 AAQETRLVAARYSKQGNWAAAVDILAS---------------------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRV   92 (336)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHH---------------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCC
Confidence            344555666666777777777665543                     33334444555555555444444444331111


Q ss_pred             CHHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHH-------
Q 010063          241 SILLVTSLLGMAKVLGSIGRA-KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR-------  312 (519)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-------  312 (519)
                      +.   .....+..++.....- ..=..+.++++....+. +.........+..+|..|++.+++.+|..+|--       
T Consensus        93 ~~---~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~  168 (336)
T 3lpz_A           93 DG---ASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPE  168 (336)
T ss_dssp             CH---HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHH
T ss_pred             CH---HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHH
Confidence            11   2233344444433321 11245667777766653 222334456778899999999999999888621       


Q ss_pred             -HHHHHHHhcCCCChhHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHhhcc-C--------------CCCchHHHHH
Q 010063          313 -ILKIYTKVYGENDGRVGMAMCSLA-HAKCANGNAEEAVELYKKALRVIKDSNY-M--------------SLDDSIMENM  375 (519)
Q Consensus       313 -al~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~~-~--------------~~~~~~~~~~  375 (519)
                       ..++.-+......+.....+...+ ..|...++...|...++.-.+...+... +              -+..|.+.-+
T Consensus       169 ~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl  248 (336)
T 3lpz_A          169 VLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFI  248 (336)
T ss_dssp             HHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHH
Confidence             111111111112233333333333 4567889999999988877765533210 0              1123332212


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc
Q 010063          376 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS  428 (519)
Q Consensus       376 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  428 (519)
                        .+...-+..+.    ...|....+.+......+.+.....+..+|..|+..
T Consensus       249 --~lLllt~q~~~----~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi  295 (336)
T 3lpz_A          249 --SMLLLSVQKGS----PDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGI  295 (336)
T ss_dssp             --HHHHHHHHSCC----HHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCC
T ss_pred             --HHHHHHHhcCC----HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCC
Confidence              22223334443    345555555554444333225566777777777754

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.29  E-value=0.99  Score=41.76  Aligned_cols=103  Identities=11%  Similarity=0.014  Sum_probs=75.6

Q ss_pred             HccccHHHHHHHHHHHHHHHHHhcCCC---C-----------HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063          214 STLENYEKSMLVYQRVINVLESRYGKT---S-----------ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (519)
Q Consensus       214 ~~~g~~~~A~~~~~~al~~~~~~~~~~---~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (519)
                      ...|+.+.|...+.+|+.+++-.+-.+   .           .....+...++..+...|++.+|+..+.+++..     
T Consensus       126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~-----  200 (388)
T 2ff4_A          126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE-----  200 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence            345677777777777776643211110   0           122345566788889999999999999998876     


Q ss_pred             CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (519)
                         +|..-..+..+..++...|+..+|+..|++.......-+|.+
T Consensus       201 ---~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~  242 (388)
T 2ff4_A          201 ---HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID  242 (388)
T ss_dssp             ---STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence               566667888899999999999999999999998877665544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=94.17  E-value=1.3  Score=33.12  Aligned_cols=64  Identities=14%  Similarity=0.207  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHcCCh---hHHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhh
Q 010063          119 LELFNEVKSMIMMGNK---NDAIDLLQANYEAVKEQINAGNKGI-EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV  192 (519)
Q Consensus       119 ~~l~~~~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  192 (519)
                      +..++.|..+....+.   .+++.+++..+..          ++ ...+.++.+|..+.+.|+|++|..+.+.+++.-
T Consensus        41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~----------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e  108 (134)
T 3o48_A           41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKE----------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  108 (134)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH----------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence            3366777777777654   4567776665543          34 578899999999999999999999999988764

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.15  E-value=0.58  Score=37.23  Aligned_cols=103  Identities=11%  Similarity=0.075  Sum_probs=66.6

Q ss_pred             HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHH
Q 010063          126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI  205 (519)
Q Consensus       126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  205 (519)
                      ......|+++.|.+..+..               +....|..+|......|+++-|+..|.++...              
T Consensus        13 ~LAL~lg~l~~A~e~a~~l---------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------------   63 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL---------------NDSITWERLIQEALAQGNASLAEMIYQTQHSF--------------   63 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH---------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------------
T ss_pred             HHHHhcCCHHHHHHHHHHh---------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------------
Confidence            3457889999998876542               22457889999999999999999999885432              


Q ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010063          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV  271 (519)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  271 (519)
                       ..+..+|...|+.+.-...-+.+.    ..   +.      ++....++...|++++++++|.+.
T Consensus        64 -~~L~~Ly~~tg~~e~L~kla~iA~----~~---g~------~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           64 -DKLSFLYLVTGDVNKLSKMQNIAQ----TR---ED------FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             -HHHHHHHHHHTCHHHHHHHHHHHH----HT---TC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             -HHHHHHHHHhCCHHHHHHHHHHHH----HC---cc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence             234445566676654333333222    11   11      122245566789999888888664

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.94  E-value=2  Score=43.23  Aligned_cols=127  Identities=8%  Similarity=-0.058  Sum_probs=81.0

Q ss_pred             HHcccc-HHHHHHHHHHHHHHHHHhcCCCCHHHHH--HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC---CC---
Q 010063          213 YSTLEN-YEKSMLVYQRVINVLESRYGKTSILLVT--SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT---ES---  283 (519)
Q Consensus       213 ~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~---  283 (519)
                      ....|+ ++.|+.++++....        .|....  ....++.......+--+|+....++++-.......   .+   
T Consensus       258 ~~~t~~~~~~a~~~le~L~~~--------~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~  329 (754)
T 4gns_B          258 IAITPSLVDFTIDYLKGLTKK--------DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS  329 (754)
T ss_dssp             HHTCGGGHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred             HcccccHHHHHHHHHHHHHhh--------CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence            334555 57788888875543        121111  11112222222344567888888877543221110   11   


Q ss_pred             ----hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 010063          284 ----ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA  355 (519)
Q Consensus       284 ----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  355 (519)
                          +.....+..-+..+...|+++-|+.+.++|+..        .|....+|..|+.+|..+|+|+.|+-.+..+
T Consensus       330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                112334555677788899999999999999986        4677779999999999999999999877765

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.82  E-value=1  Score=35.76  Aligned_cols=101  Identities=15%  Similarity=0.070  Sum_probs=66.4

Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHH
Q 010063          297 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR  376 (519)
Q Consensus       297 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  376 (519)
                      ....|+++.|.+..+..          +   ....|..||......|+++-|+.+|+++-+.                  
T Consensus        15 AL~lg~l~~A~e~a~~l----------~---~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~------------------   63 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL----------N---DSITWERLIQEALAQGNASLAEMIYQTQHSF------------------   63 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH----------C---CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH------------------
T ss_pred             HHhcCCHHHHHHHHHHh----------C---CHHHHHHHHHHHHHcCChHHHHHHHHHhCCH------------------
Confidence            35689999988876543          1   1346889999999999999999999885443                  


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010063          377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  441 (519)
Q Consensus       377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (519)
                      ..+.-+|...|+.+.-....+.+..    .   ...      +.-..++..+|++++++++|.+.
T Consensus        64 ~~L~~Ly~~tg~~e~L~kla~iA~~----~---g~~------n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           64 DKLSFLYLVTGDVNKLSKMQNIAQT----R---EDF------GSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHH----T---TCH------HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHH----C---ccH------HHHHHHHHHcCCHHHHHHHHHHC
Confidence            3355566677776554443333321    1   111      12234566789999998888654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=93.73  E-value=0.91  Score=33.93  Aligned_cols=69  Identities=12%  Similarity=0.016  Sum_probs=51.5

Q ss_pred             ChHHHHHHHHHHHHHHhcCChH---HHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063          158 GIEEVAILDIIALGYVYIGDLK---FVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (519)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (519)
                      +...+.+.+.+|+++....+.+   +++.+++......      .......++.+|..+++.|+|++|..+.+..+++
T Consensus        36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~------~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA------ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC------GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC------cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            3344577788888888876654   5666666655421      2345677999999999999999999999988875

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=93.62  E-value=1.8  Score=32.84  Aligned_cols=68  Identities=10%  Similarity=0.020  Sum_probs=50.6

Q ss_pred             hHHHHHHHHHHHHHHhcCChH---HHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063          159 IEEVAILDIIALGYVYIGDLK---FVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (519)
Q Consensus       159 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (519)
                      .....+.+++|+++....+.+   +++.+++......    +  ......++.+|..+++.|+|++|..+.+..++.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~----~--~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA----E--SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC----C--STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----c--cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            345667788888888877665   4566666554421    1  235567999999999999999999999998885

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=93.55  E-value=3.7  Score=36.26  Aligned_cols=150  Identities=11%  Similarity=0.012  Sum_probs=84.2

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHhhccCCCC
Q 010063          290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE-EAVELYKKALRVIKDSNYMSLD  368 (519)
Q Consensus       290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~  368 (519)
                      +..-+..+.+.|++..|.++..-.++.+.+..   .+........+..++.....-+ .=..+.+++++...+.......
T Consensus        56 L~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~---~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~G  132 (312)
T 2wpv_A           56 ISQGALSFLKAKQGGSGTDLIFYLLEVYDLAE---VKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFG  132 (312)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTC
T ss_pred             HHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCC
Confidence            33344455566777777776666666666542   1112224444555554432211 2356777788777654211112


Q ss_pred             chHHHHHHHHHHHHHHHcCChHHHHHHHHHH----HH----H---HHHhhCCCChhHHHHHHHHH-HHHHhccCHHHHHH
Q 010063          369 DSIMENMRIDLAELLHIVGRGQEGRELLEEC----LL----I---TEKYKGKEHPSFVTHLLNLA-ASYSRSKNFVEAER  436 (519)
Q Consensus       369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a----l~----~---~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~  436 (519)
                      +   ...+..+|..|...|++.+|..+|-.+    .+    +   +.+......+.....+...+ ..|...|+...|..
T Consensus       133 d---p~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~  209 (312)
T 2wpv_A          133 D---PYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHE  209 (312)
T ss_dssp             C---HHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHH
T ss_pred             C---HHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHH
Confidence            3   345677999999999999999877311    11    1   11111013344444443333 34678899999999


Q ss_pred             HHHHHHHHH
Q 010063          437 LLRICLDIM  445 (519)
Q Consensus       437 ~~~~al~~~  445 (519)
                      .+..-....
T Consensus       210 ~~~~f~~~~  218 (312)
T 2wpv_A          210 SKDIFLERF  218 (312)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988776554

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.40  E-value=0.8  Score=43.40  Aligned_cols=143  Identities=10%  Similarity=0.092  Sum_probs=61.0

Q ss_pred             HHccccHHHHHHHHHHHH--HHHHHhc-CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHH-------HHHHHHHHHh-cCC
Q 010063          213 YSTLENYEKSMLVYQRVI--NVLESRY-GKTSILLVTSLLGMAKVLGSIGRAKKAVEIY-------HRVITILELN-RGT  281 (519)
Q Consensus       213 ~~~~g~~~~A~~~~~~al--~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-------~~al~~~~~~-~~~  281 (519)
                      +...+++++|..+-...+  +...... ..-+...+.+|+..+.++...|+........       ...+...+.. ...
T Consensus       146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~  225 (523)
T 4b4t_S          146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH  225 (523)
T ss_dssp             ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence            456788888888776554  2221110 0112345667777777777777766543221       1222222222 222


Q ss_pred             CChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      +....+..++.+-+.|...+.+++|..+..++.-.  .. ...+...+.-++.+|.++..+++|.+|.+++..|+..
T Consensus       226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP--~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk  299 (523)
T 4b4t_S          226 DNETKAMLINLILRDFLNNGEVDSASDFISKLEYP--HT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK  299 (523)
T ss_dssp             SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSC--TT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred             CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCC--cc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            44556778888999999999999999999887410  00 0112345677888999999999999999999998865

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.36  E-value=0.77  Score=43.77  Aligned_cols=63  Identities=13%  Similarity=0.168  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK  315 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  315 (519)
                      ..++..+|.+......+..|..+|.+|..+        .|.....++.||.+....|+.-+|+-+|.+++.
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~  214 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence            346778999999999999999999999998        678889999999999999999999999999876

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.12  E-value=4.2  Score=38.61  Aligned_cols=144  Identities=12%  Similarity=0.054  Sum_probs=61.2

Q ss_pred             HHhhcCCHHHHHHHHHHHH--HHHHHhc-CCCChhhHHHHHHHHHHHHhCCCHHHHHHHH-------HHHHHHHHHhcC-
Q 010063          254 VLGSIGRAKKAVEIYHRVI--TILELNR-GTESADLVLPLFSLGSLFIKEGKAVDAESVF-------SRILKIYTKVYG-  322 (519)
Q Consensus       254 ~~~~~g~~~~A~~~~~~al--~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-------~~al~~~~~~~~-  322 (519)
                      .+...+++++|.++-...+  +...... ..-+...+.+|+..+.++...|+........       ...+..++.... 
T Consensus       145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr  224 (523)
T 4b4t_S          145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK  224 (523)
T ss_dssp             ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence            3456788888888776655  2222110 0113445667777788887777766543221       122233333222 


Q ss_pred             CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063          323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (519)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (519)
                      .+....+..++.+-..|...+.++.|..+..++.  +..   ....+...+..++.+|.++.-+++|.+|.+++..|+..
T Consensus       225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~---~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk  299 (523)
T 4b4t_S          225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPH---TDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK  299 (523)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCT---TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred             cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCc---ccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            2334466678888999999999999999988863  111   11234556777889999999999999999999998754

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=93.06  E-value=2.4  Score=33.11  Aligned_cols=97  Identities=14%  Similarity=0.033  Sum_probs=67.5

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH----------H
Q 010063          377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM----------T  446 (519)
Q Consensus       377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------~  446 (519)
                      ..++.++.-.|.+..++-++..             ..+..+.+.-+.||...+++.+|+..++..++-.          -
T Consensus        37 lL~~I~LyyngEY~R~Lf~L~~-------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~  103 (242)
T 3kae_A           37 MLMSIVLYLNGEYTRALFHLHK-------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI  103 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT-------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred             hhhhhhhhhcchHhHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc
Confidence            3467778888998888766542             2234455566889999999999999999988310          0


Q ss_pred             HhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063          447 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (519)
Q Consensus       447 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (519)
                      +..--+..+.-..+..+|.++.+.|+.++|+.++......
T Consensus       104 ~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~  143 (242)
T 3kae_A          104 QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK  143 (242)
T ss_dssp             HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence            0100111222334677899999999999999999887653

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=92.32  E-value=12  Score=38.75  Aligned_cols=199  Identities=17%  Similarity=0.150  Sum_probs=108.1

Q ss_pred             hcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHH
Q 010063          174 YIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK--TSILLVTSLLGM  251 (519)
Q Consensus       174 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~l  251 (519)
                      ..|+.++++..+...+.-  ....+.....-+++.+|.++...++  ++..++...+.-....-+.  .......+...+
T Consensus       386 h~g~~~~gl~~L~~yL~~--~~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL  461 (963)
T 4ady_A          386 HKGNLLEGKKVMAPYLPG--SRASSRFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI  461 (963)
T ss_dssp             TSSCTTTHHHHHTTTSTT--SCCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred             ccCchHHHHHHHHHhccc--cCCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence            467777776666543321  0012223355667888888776664  6777776655432100000  012333455678


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 010063          252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESAD-LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  330 (519)
Q Consensus       252 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  330 (519)
                      |.++...++- ++.+.+...+.-       ++.. ...+-..+|.++...|+-+-...++..+.+       ..+..+. 
T Consensus       462 Gla~~GS~~e-ev~e~L~~~L~d-------d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e-------~~~e~vr-  525 (963)
T 4ady_A          462 GLAAMGSANI-EVYEALKEVLYN-------DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE-------TQHGNIT-  525 (963)
T ss_dssp             HHHSTTCCCH-HHHHHHHHHHHT-------CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-------CSCHHHH-
T ss_pred             HHHhcCCCCH-HHHHHHHHHHhc-------CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc-------cCcHHHH-
Confidence            8888777763 455555555431       2221 124556788888889987666666555543       1222222 


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010063          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL  400 (519)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  400 (519)
                      -...+|..+...|+.+.+....+....        ..++......-..+|..|...|+...-..++..+.
T Consensus       526 R~aalgLGll~~g~~e~~~~li~~L~~--------~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~  587 (963)
T 4ady_A          526 RGLAVGLALINYGRQELADDLITKMLA--------SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV  587 (963)
T ss_dssp             HHHHHHHHHHTTTCGGGGHHHHHHHHH--------CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhCCChHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence            224455555567777766665554332        23333333344667888889999654444666554

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=91.19  E-value=3.9  Score=31.00  Aligned_cols=68  Identities=13%  Similarity=0.073  Sum_probs=53.5

Q ss_pred             hhhHHHHHHHHHHHHhCCCHH---HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          284 ADLVLPLFSLGSLFIKEGKAV---DAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      .....+.+++|+++....+..   +++.+++..+..       .....-..++.||..+.+.|+|++|..+.+..+++
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            345788899999999887654   566666665552       22256678899999999999999999999999987

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=90.56  E-value=12  Score=40.27  Aligned_cols=105  Identities=12%  Similarity=0.106  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-------------HHhc--CCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 010063          288 LPLFSLGSLFIKEGKAVDAESVFSRILKIY-------------TKVY--GENDGRVGMAMCSLAHAKCANGNAEEAVELY  352 (519)
Q Consensus       288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  352 (519)
                      ...+.+|.++...|++++|..+|+++-.-.             ....  .........-|..+..++...|.++.++++.
T Consensus       843 ~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa  922 (1139)
T 4fhn_B          843 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS  922 (1139)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            345789999999999999999998873210             0000  0001112345677888899999999999999


Q ss_pred             HHHHHHHHhhccCCCCch-HHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010063          353 KKALRVIKDSNYMSLDDS-IMENMRIDLAELLHIVGRGQEGRELLEE  398 (519)
Q Consensus       353 ~~al~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~  398 (519)
                      +.|++..      .++++ .....+.++-..+...|+|++|...+..
T Consensus       923 ~lAi~~~------~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          923 LLADASK------ETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             HHHHHHC------CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             HHHHHhc------cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            9998862      23333 3344678888889999999999877643

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=90.54  E-value=8.7  Score=33.90  Aligned_cols=145  Identities=11%  Similarity=-0.033  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (519)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (519)
                      +...+.+.......|+|=+|.+.++.......+    .....+..++++.-+..+...|++..|..+....++..+..+.
T Consensus        13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~----~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~   88 (312)
T 2wpv_A           13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVR----SKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEV   88 (312)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC
Confidence            334556666677788888888877776655443    2224455556666777777788888877776666665544222


Q ss_pred             CchHHHHHHHHHHHHHHccccHH-HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 010063          198 DEPLLDAILLHMGSMYSTLENYE-KSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYH  269 (519)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  269 (519)
                      .. . ......+..++.....-+ .=..+..+++....+..+ ........+..+|..|...|++.+|..+|-
T Consensus        89 ~~-~-~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~-~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A           89 KV-D-DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSE-YKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             CC-S-HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSS-CTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CC-C-HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            11 1 112444555554422111 224556666665544321 111224566778888888888888777764

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=90.41  E-value=3.4  Score=44.47  Aligned_cols=106  Identities=12%  Similarity=0.035  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc-------------cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010063          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSN-------------YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  397 (519)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (519)
                      ..+.+|.++...|++++|..+|+++-.......             ...+........|..+..++.+.|.++.+++..+
T Consensus       844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~  923 (1139)
T 4fhn_B          844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL  923 (1139)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            347789999999999999999988632111000             0011111123456778888999999999999999


Q ss_pred             HHHHHHHHhhCCCChhH-HHHHHHHHHHHHhccCHHHHHHHHHH
Q 010063          398 ECLLITEKYKGKEHPSF-VTHLLNLAASYSRSKNFVEAERLLRI  440 (519)
Q Consensus       398 ~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~  440 (519)
                      .|++..    +++.+.. ...+.++=..+...|+|++|...+..
T Consensus       924 lAi~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          924 LADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             HHHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             HHHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            998753    2233332 33677788888999999999877643

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=90.16  E-value=5.6  Score=31.09  Aligned_cols=96  Identities=17%  Similarity=0.095  Sum_probs=69.9

Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH----------HH
Q 010063          250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY----------TK  319 (519)
Q Consensus       250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------~~  319 (519)
                      .++.+++..|+|..|+-++..             ...+.+.+.-+.+|....++..|+..++..++--          -+
T Consensus        38 L~~I~LyyngEY~R~Lf~L~~-------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~  104 (242)
T 3kae_A           38 LMSIVLYLNGEYTRALFHLHK-------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ  104 (242)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred             hhhhhhhhcchHhHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence            467778889999888766532             2346677778889999999999999999988310          00


Q ss_pred             hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      .+--+..+.-..+..+|.++...|+-+||+.++......
T Consensus       105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~  143 (242)
T 3kae_A          105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK  143 (242)
T ss_dssp             TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence            111112233446788999999999999999999987664

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=88.79  E-value=1.3  Score=42.12  Aligned_cols=79  Identities=14%  Similarity=0.143  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (519)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (519)
                      .++..+|.+......+..|..+|.+|..+.        |.....++.+|.+....|+.-+|+-+|-+++..       ..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~--------P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-------~~  217 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLV--------PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-------KF  217 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-------SB
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhC--------CCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-------CC
Confidence            467789999999999999999999999873        555788999999999999999999999998854       12


Q ss_pred             hhhHHHHHHHHHHHH
Q 010063          284 ADLVLPLFSLGSLFI  298 (519)
Q Consensus       284 ~~~~~~~~~la~~~~  298 (519)
                      | ...+..++...+.
T Consensus       218 P-f~~a~~nL~~~f~  231 (497)
T 1ya0_A          218 P-FPAASTNLQKALS  231 (497)
T ss_dssp             C-CHHHHHHHHHHHH
T ss_pred             C-ChhHHHHHHHHHH
Confidence            2 3555666665554

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=88.17  E-value=14  Score=32.94  Aligned_cols=191  Identities=7%  Similarity=-0.065  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHcCCh---hHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063          121 LFNEVKSMIMMGNK---NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (519)
Q Consensus       121 l~~~~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (519)
                      .+.+.......|+|   =+|.+.++.......+    .....+..++++.-+..+...|++..|.++....++..+..+.
T Consensus        15 ~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~----~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~   90 (336)
T 3lpz_A           15 IIARLQRRIAEGQPEEQYEAAQETRLVAARYSK----QGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQ   90 (336)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCCCccccHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC
Confidence            44555556667777   6666666655544333    2334445556666677777778877777766665555544221


Q ss_pred             CchHHHHHHHHHHHHHHccccH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHH------
Q 010063          198 DEPLLDAILLHMGSMYSTLENY-EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHR------  270 (519)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------  270 (519)
                      ....  .....+..++.....- ..=..+..+++.-..+. +.........+..+|..|...+++.+|..++--      
T Consensus        91 ~~~~--~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~  167 (336)
T 3lpz_A           91 RVDG--ASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESP  167 (336)
T ss_dssp             CCCH--HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHH
T ss_pred             CCCH--HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchH
Confidence            1111  2244455555443321 12244566666655542 221122245667889999999999999888621      


Q ss_pred             --HHHHHHHhcCCCChhhHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHH
Q 010063          271 --VITILELNRGTESADLVLPLFS-LGSLFIKEGKAVDAESVFSRILKIYT  318 (519)
Q Consensus       271 --al~~~~~~~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~  318 (519)
                        ..++.-+......+.....+.. ....|...++...|...+..-.+...
T Consensus       168 ~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~  218 (336)
T 3lpz_A          168 EVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALV  218 (336)
T ss_dssp             HHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence              1111111111122333333333 33456778999999998877776553

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=87.75  E-value=28  Score=36.03  Aligned_cols=266  Identities=14%  Similarity=0.120  Sum_probs=133.2

Q ss_pred             HHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC---chHHHHH
Q 010063          129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD---EPLLDAI  205 (519)
Q Consensus       129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~  205 (519)
                      ...|+.++++..+.+-+..     ..........-+++.+|.++...+  +++..++...+.-......+   ......+
T Consensus       385 Ih~g~~~~gl~~L~~yL~~-----~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gA  457 (963)
T 4ady_A          385 IHKGNLLEGKKVMAPYLPG-----SRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGA  457 (963)
T ss_dssp             HTSSCTTTHHHHHTTTSTT-----SCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHH
T ss_pred             hccCchHHHHHHHHHhccc-----cCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHH
Confidence            4456666665555443220     001112234556777777765554  46777666655432110011   1222234


Q ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSIL-LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA  284 (519)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  284 (519)
                      -..||.++.-.++ +++...+...+.       .++.. ...+-..+|.++...|+-+-...++..+.+.       .+ 
T Consensus       458 aLGLGla~~GS~~-eev~e~L~~~L~-------dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~-------~~-  521 (963)
T 4ady_A          458 SLGIGLAAMGSAN-IEVYEALKEVLY-------NDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET-------QH-  521 (963)
T ss_dssp             HHHHHHHSTTCCC-HHHHHHHHHHHH-------TCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC-------SC-
T ss_pred             HHHHHHHhcCCCC-HHHHHHHHHHHh-------cCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc-------Cc-
Confidence            5577877776665 345555554443       12222 2245667888899999877666665554431       12 


Q ss_pred             hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010063          285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (519)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (519)
                      +...-...+|..+...|+.+.+..+.+.....       .+|. ...+...+|..|...|+...-..++..+..      
T Consensus       522 e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~------  588 (963)
T 4ady_A          522 GNITRGLAVGLALINYGRQELADDLITKMLAS-------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS------  588 (963)
T ss_dssp             HHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc------
Confidence            22333344555556778877777666554431       2333 223455678889999997555446665543      


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 010063          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF-VTHLLNLAASYSRSKNFVEAERLLRICL  442 (519)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (519)
                        ..++.....+  -+|..+...|+.+.+...+..    ..+   ..++.+ ..+-..+|.+....++ .+++..+.+..
T Consensus       589 --d~~d~VRraA--ViaLGlI~~g~~e~v~rlv~~----L~~---~~d~~VR~gAalALGli~aGn~~-~~aid~L~~L~  656 (963)
T 4ady_A          589 --DSNDDVRRAA--VIALGFVLLRDYTTVPRIVQL----LSK---SHNAHVRCGTAFALGIACAGKGL-QSAIDVLDPLT  656 (963)
T ss_dssp             --CSCHHHHHHH--HHHHHHHTSSSCSSHHHHTTT----GGG---CSCHHHHHHHHHHHHHHTSSSCC-HHHHHHHHHHH
T ss_pred             --CCcHHHHHHH--HHHHHhhccCCHHHHHHHHHH----HHh---cCCHHHHHHHHHHHHHhccCCCc-HHHHHHHHHHc
Confidence              1222222223  333344445555433333321    111   122322 2233345554444443 66777766654

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=87.25  E-value=12  Score=31.07  Aligned_cols=181  Identities=8%  Similarity=-0.043  Sum_probs=101.7

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhccCCCCch
Q 010063          292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKALRVIKDSNYMSLDDS  370 (519)
Q Consensus       292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~  370 (519)
                      .++.+....++|++...+.+++.+.+.....+   -...-.+.++..|-. .|....+...+..    .++..  ..+..
T Consensus        11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~e---Lt~EERnLLSvAYKNvig~rR~swRiiss----iEqke--k~~~~   81 (227)
T 2o8p_A           11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENSE---FDDEERHLLTLCIKHKISDYRTMTSQVLQ----EQTKQ--LNNDE   81 (227)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHS--CSCHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhhhccCCC---CCHHHHHHHHHHHHHhhcccHHHHHHHHH----HHHHH--cCCHH
Confidence            57888888999999999999988732111111   111122223333321 1222223222222    11110  01111


Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH-----hccCHHHHHHHHHHHHHHH
Q 010063          371 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS-----RSKNFVEAERLLRICLDIM  445 (519)
Q Consensus       371 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~  445 (519)
                      .     ..+..-|... =-.+=.......+.+..+.+-+........+-..|..|.     ..|+.+.|...|++|.++.
T Consensus        82 ~-----~~~i~~yr~k-ie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA  155 (227)
T 2o8p_A           82 L-----VKICSEYVFS-LRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLL  155 (227)
T ss_dssp             H-----HHHHHHHHHH-HHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             H-----HHHHHHHHHH-HHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHH
Confidence            1     1122222111 112223445566666555443332122223334455443     4577899999999999999


Q ss_pred             HHhcCCCCcchhHHHHHHHHHHH-hcCChHHHHHHHHHHHHHH
Q 010063          446 TKTVGPDDQSISFPMLHLGITLY-HLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       446 ~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~  487 (519)
                      .+.+.|.||-......+.+..|+ -+++.++|....++|+++.
T Consensus       156 ~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~  198 (227)
T 2o8p_A          156 CEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL  198 (227)
T ss_dssp             HHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             HhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            98788899988887788877776 4799999999999998865

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=86.95  E-value=5.5  Score=27.21  Aligned_cols=40  Identities=5%  Similarity=0.008  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHh
Q 010063          114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQIN  153 (519)
Q Consensus       114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~  153 (519)
                      .......++..|...-..|+|++|+.+|..+++.+.....
T Consensus        12 ~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk   51 (86)
T 4a5x_A           12 QSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLK   51 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence            3345556888888889999999999999999998877653

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=86.58  E-value=14  Score=31.39  Aligned_cols=185  Identities=13%  Similarity=0.043  Sum_probs=96.9

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063          248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGENDG  326 (519)
Q Consensus       248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~  326 (519)
                      +..++.+....++|++...+.+++.+.     +........-.+.|..+|-. .|....+.+.+... +....  +....
T Consensus        11 ~v~~AkLaeqaeRyddm~~~mk~v~~~-----~~~~eLt~EERnLLSvaYKNvig~rR~swRiissi-eqke~--~k~~~   82 (260)
T 1o9d_A           11 NVYMAKLAEQAERYEEMVEFMEKVSNS-----LGSEELTVEERNLLSVAYKNVIGARRASWRIISSI-EQKEE--SRGNE   82 (260)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHT-----CSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--TTTCH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHcc-----CCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHH-HHHhh--ccCcH
Confidence            446788888899999999999998774     10012233334444444432 12222222222221 11111  00111


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC-CCCchHHHHHHHHHHHHHHHc-----C-----ChHHHHHH
Q 010063          327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM-SLDDSIMENMRIDLAELLHIV-----G-----RGQEGREL  395 (519)
Q Consensus       327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~~  395 (519)
                      .    ...+..-|.. .=-++=...+...+.+..+..-. ..+....+..+-..|..|.-.     |     -.+.|...
T Consensus        83 ~----~~~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~a  157 (260)
T 1o9d_A           83 E----HVNSIREYRS-KIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTA  157 (260)
T ss_dssp             H----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred             H----HHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHH
Confidence            1    1111111111 11122334445555544432100 111122222223344444321     2     13578889


Q ss_pred             HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHH
Q 010063          396 LEECLLITEKYKGKEHPSFVTHLLNLAASYSR-SKNFVEAERLLRICLDIM  445 (519)
Q Consensus       396 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~  445 (519)
                      |++|.++....+.+.||.......+.+..|.. .++.++|..+.+++.+-.
T Consensus       158 Y~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A  208 (260)
T 1o9d_A          158 YKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  208 (260)
T ss_dssp             HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            99999999888889999888887888777665 799999999888877643

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.21  E-value=9.3  Score=35.21  Aligned_cols=108  Identities=13%  Similarity=-0.051  Sum_probs=74.5

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHhhCC---------CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcC
Q 010063          380 AELLHIVGRGQEGRELLEECLLITEKYKGK---------EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG  450 (519)
Q Consensus       380 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  450 (519)
                      ..+.....+.++|.+++++......+..+.         .......+...++..|...|+.++|..+++++-.......+
T Consensus        83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~  162 (393)
T 4b4t_O           83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS  162 (393)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence            345556778899999888764433322211         11234566778899999999999999999999888777544


Q ss_pred             CCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          451 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       451 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                      .+.......+...+..|...+++..+....-.++...
T Consensus       163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~  199 (393)
T 4b4t_O          163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL  199 (393)
T ss_dssp             SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence            4433455556667788888899888777666665543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=85.34  E-value=10  Score=32.35  Aligned_cols=124  Identities=12%  Similarity=0.035  Sum_probs=77.4

Q ss_pred             HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHH
Q 010063          126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI  205 (519)
Q Consensus       126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  205 (519)
                      ..+++.|+.++|+...+..++.          .|.++.....+...+.-.|+|+.|.+-++.+.++...    ....+..
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~----------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~----~~~~a~~   70 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKA----------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE----YLPGASQ   70 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHT----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG----GHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHh----------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch----hhHHHHH
Confidence            4567889999999999888876          7778888888889999999999999999888776521    1111111


Q ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHH--HHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010063          206 LLHMGSMYSTLENYEKSMLVYQRVINVL--ESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (519)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (519)
                      |..+-.          |+..=.+.+.-.  ....+. .+. ......-+......|+.++|...-.++.+..
T Consensus        71 yr~lI~----------aE~~R~~vfaG~~~P~~~g~-~~~-w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a  130 (273)
T 1zbp_A           71 LRHLVK----------AAQARKDFAQGAATAKVLGE-NEE-LTKSLVSFNLSMVSQDYEQVSELALQIEELR  130 (273)
T ss_dssp             HHHHHH----------HHHHHHHHTTSCCCEECCCS-CHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHH----------HHHHHHHHHcCCCCCCCCCC-CHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence            221111          111111111100  000111 122 2233344666677899999999999998874

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=84.47  E-value=18  Score=30.75  Aligned_cols=57  Identities=19%  Similarity=0.154  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh-cCChHHHHHHHHHHHHHH
Q 010063          431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       431 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~  487 (519)
                      .+.|...|++|.++....+.|.||-......+.+..|+. +++.++|..+.+++++-.
T Consensus       151 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A  208 (260)
T 1o9d_A          151 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  208 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            357889999999999888899999888888888888776 799999998888777644

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.43  E-value=27  Score=32.06  Aligned_cols=107  Identities=10%  Similarity=-0.022  Sum_probs=75.0

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhhhhhc----------CCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcC
Q 010063          169 ALGYVYIGDLKFVQSLLDMMSGIVDSL----------KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG  238 (519)
Q Consensus       169 ~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  238 (519)
                      ..+.....+.++|.++++.........          .........+...++..|...|+.++|..+++++-.......+
T Consensus        83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~  162 (393)
T 4b4t_O           83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS  162 (393)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence            334556788999999988764433211          0111223445677899999999999999999999888777655


Q ss_pred             CCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010063          239 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (519)
Q Consensus       239 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (519)
                      .+.......+...+..|...+++..+....-..+...
T Consensus       163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~  199 (393)
T 4b4t_O          163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL  199 (393)
T ss_dssp             SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence            5555666777777888888999988776666665543

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=82.66  E-value=12  Score=27.33  Aligned_cols=57  Identities=14%  Similarity=0.179  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 010063          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGY  172 (519)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~  172 (519)
                      .....++..|...-..|+|++|+.+|..+++.+.......+..+..-..+.....-|
T Consensus        16 ~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eY   72 (117)
T 2cpt_A           16 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEY   72 (117)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            344457777778888999999999999999988776543334444444444443333

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=82.44  E-value=20  Score=29.70  Aligned_cols=181  Identities=11%  Similarity=0.017  Sum_probs=99.0

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHhhhhhcCCCchH
Q 010063          123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY-IGDLKFVQSLLDMMSGIVDSLKDDEPL  201 (519)
Q Consensus       123 ~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~  201 (519)
                      ..++..-+.++|++......++.+.....   +.  .-...-.+.++.+|-. .|....+.+.+....+   ....+ ..
T Consensus        11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~---~~--eLt~EERnLLSvAYKNvig~rR~swRiissiEq---kek~~-~~   81 (227)
T 2o8p_A           11 YRAQVFEWGGCFDKMFEALKSLIYLSEFE---NS--EFDDEERHLLTLCIKHKISDYRTMTSQVLQEQT---KQLNN-DE   81 (227)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSCSC-HH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhhhcc---CC--CCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHH---HHcCC-HH
Confidence            46677788999999999999887721110   11  1112222334444422 2333334333333221   11111 11


Q ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-----hcCCHHHHHHHHHHHHHHHH
Q 010063          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG-----SIGRAKKAVEIYHRVITILE  276 (519)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~  276 (519)
                          ...+..-|... =-.+=.......+.+....+-+.....+-.+-..|..|.     ..|+.+.|...|+.|.++..
T Consensus        82 ----~~~~i~~yr~k-ie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~  156 (227)
T 2o8p_A           82 ----LVKICSEYVFS-LRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLC  156 (227)
T ss_dssp             ----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHH
Confidence                11122222111 112333455566666655544432222223333444443     35678999999999999998


Q ss_pred             HhcCCCChhhHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHH
Q 010063          277 LNRGTESADLVLPLFSLGSLF-IKEGKAVDAESVFSRILKIY  317 (519)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~  317 (519)
                      ...++.+|.......|.+..| .-+++.++|..+.++++.+.
T Consensus       157 ~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~  198 (227)
T 2o8p_A          157 EHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL  198 (227)
T ss_dssp             HCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             hhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            766777776666555665554 46899999999999998764

>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...

Probab=82.15  E-value=21  Score=29.80  Aligned_cols=60  Identities=18%  Similarity=0.120  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHHh
Q 010063          431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY-HLNRDKEAEKLVLEALYIREIA  490 (519)
Q Consensus       431 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~  490 (519)
                      .+.|...|++|.++....+.|.||-......+.+..|+ -.++.++|....++|++-.-.-
T Consensus       149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~Ai~e  209 (236)
T 3iqu_A          149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMAD  209 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            46788999999999988899999998888888888777 4699999999999888755443

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=80.63  E-value=11  Score=25.52  Aligned_cols=38  Identities=13%  Similarity=0.089  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHh
Q 010063          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQIN  153 (519)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~  153 (519)
                      .....+...|...-..|++++|+.+|.++++.+.....
T Consensus        17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk   54 (83)
T 2w2u_A           17 EMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVS   54 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            44455778888889999999999999999998777643

>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}

Probab=80.39  E-value=26  Score=29.71  Aligned_cols=59  Identities=17%  Similarity=0.081  Sum_probs=48.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHH
Q 010063          389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR-SKNFVEAERLLRICLDIMTK  447 (519)
Q Consensus       389 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~  447 (519)
                      .+.|...|++|.++....+.+.||.......+.+..|.. .++.++|..+.++|.+-.-.
T Consensus       172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai~  231 (261)
T 3ubw_A          172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIA  231 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            367889999999999888889999888888888777665 79999999998888775533

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	519
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	1e-10
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.002
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	4e-05
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	7e-04
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	0.001
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.002
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	0.003

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 60.7 bits (145), Expect = 1e-10
 Identities = 52/378 (13%), Positives = 125/378 (33%), Gaps = 22/378 (5%)

Query: 115 ERQLLELFNEVKSMIMM--GNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGY 172
           E  +   FN +++ + +  GN ++A  L +    A+  +          +    ++    
Sbjct: 7   EDTMHAEFNALRAQVAINDGNPDEAERLAK---LAL--EELPPGWFYSRIVATSVLGEVL 61

Query: 173 VYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232
              G+L    +L+     +          L +++     +       + +    ++   +
Sbjct: 62  HCKGELTRSLALMQQTEQMARQHDVWHYALWSLI-QQSEILFAQGFLQTAWETQEKAFQL 120

Query: 233 LESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS 292
           +  ++ +   +    +   A++L +  R  +A       I +L   +  +       L  
Sbjct: 121 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC---LAM 177

Query: 293 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY 352
           L    +  G   +A S  +R+  +       +   +  A           G+   A    
Sbjct: 178 LIQCSLARGDLDNARSQLNRLENLLGN-GKYHSDWISNANKVRVIYWQMTGDKAAAANWL 236

Query: 353 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 412
           +   +    +N+       ++    ++A    ++G  +    +LEE          +   
Sbjct: 237 RHTAKPEFANNH------FLQGQWRNIARAQILLGEFEPAEIVLEELNEN--ARSLRLMS 288

Query: 413 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP-MLHLGITLYHLN 471
               +LL L   Y ++    +A+R+L   L +  +T       I    M      L  LN
Sbjct: 289 DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLN 348

Query: 472 RDKEAEKLVLEALYIREI 489
              E E+   + + +REI
Sbjct: 349 TLPELEQHRAQRI-LREI 365

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 37/303 (12%), Positives = 78/303 (25%), Gaps = 11/303 (3%)

Query: 82  HHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLL 141
             L        +  RS  L   +  +    + +   L  L  + + +   G    A +  
Sbjct: 55  SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQ 114

Query: 142 QANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL 201
           +  ++          +      ++ I A        L   ++        ++ L   +P 
Sbjct: 115 EKAFQL--INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG---IEVLSSYQPQ 169

Query: 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA 261
                L M    S       +       +  L       S  +  +           G  
Sbjct: 170 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 229

Query: 262 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321
             A             N       L     ++    I  G+   AE V   + +    + 
Sbjct: 230 AAAANWLRHTAKPEFANN----HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL- 284

Query: 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE 381
                 +   +  L       G   +A  +   AL++   + ++S      E M   L +
Sbjct: 285 -RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQ 343

Query: 382 LLH 384
           L+ 
Sbjct: 344 LIQ 346

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 3e-09
 Identities = 41/264 (15%), Positives = 92/264 (34%), Gaps = 50/264 (18%)

Query: 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267
           ++G +++       ++  +++ + +  +         + + + +  VL       +AV  
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPN--------FLDAYINLGNVLKEARIFDRAVAA 225

Query: 268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 327
           Y R +++        S +  +   +L  ++ ++G    A   + R +++           
Sbjct: 226 YLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--------QPH 269

Query: 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG 387
              A C+LA+A    G+  EA + Y  ALR                +   +LA +    G
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALR----------LCPTHADSLNNLANIKREQG 319

Query: 388 RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447
             +E   L  + L +         P F     NLA+   +     EA    +  + I   
Sbjct: 320 NIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--- 368

Query: 448 TVGPDDQSISFPMLHLGITLYHLN 471
                  + +    ++G TL  + 
Sbjct: 369 -----SPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 8e-08
 Identities = 40/236 (16%), Positives = 77/236 (32%), Gaps = 42/236 (17%)

Query: 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 310
           +  V  + G    A+  + + +T+          + +    +LG++  +      A + +
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAY 226

Query: 311 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 370
            R L +             +   +LA      G  + A++ Y++A+ +            
Sbjct: 227 LRALSLSPNHA--------VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF-------- 270

Query: 371 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 430
              +   +LA  L   G   E  +     L        +  P+    L NLA       N
Sbjct: 271 --PDAYCNLANALKEKGSVAEAEDCYNTAL--------RLCPTHADSLNNLANIKREQGN 320

Query: 431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486
             EA RL R  L++            +    +L   L    + +EA     EA+ I
Sbjct: 321 IEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 4e-06
 Identities = 41/327 (12%), Positives = 102/327 (31%), Gaps = 24/327 (7%)

Query: 31  QNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSA 90
                +  +    ++       I                  +L            +  + 
Sbjct: 65  LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124

Query: 91  PNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKE 150
            +    +  L+   S+L + +    R        +K++    N   A   L   + A  E
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184

Query: 151 QINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMG 210
              A +   + V +       Y+ +G++     + D             P    +  ++ 
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244

Query: 211 SMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHR 270
            +Y      + ++  Y+R I +              +   +A  L   G   +A + Y+ 
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIELQPH--------FPDAYCNLANALKEKGSVAEAEDCYNT 296

Query: 271 VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM 330
            + +   +  +          +L ++  ++G   +A  ++ + L+++ +           
Sbjct: 297 ALRLCPTHADSL--------NNLANIKREQGNIEEAVRLYRKALEVFPEFA--------A 340

Query: 331 AMCSLAHAKCANGNAEEAVELYKKALR 357
           A  +LA      G  +EA+  YK+A+R
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYKEAIR 367

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 7/68 (10%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349
              L     + G    AE    ++ +      G         +  L+         + + 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTG--------VLLLLSSIHFQCRRLDRSA 53

Query: 350 ELYKKALR 357
                A++
Sbjct: 54  HFSTLAIK 61

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 4e-05
 Identities = 30/280 (10%), Positives = 70/280 (25%), Gaps = 45/280 (16%)

Query: 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA 261
             A         +     E +   Y +++  L + +    +        +  +       
Sbjct: 78  NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF-NVDLPCRVKSSQLGIISNKQTHT 136

Query: 262 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321
              V+      +                L  LG +     +   AES +    ++     
Sbjct: 137 SAIVKPQSSSCSY----------ICQHCLVHLGDIARYRNQTSQAESYYRHAAQL----- 181

Query: 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE 381
                  G     LA    + G+    +  Y +++ V           +   N++     
Sbjct: 182 ---VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF------PAASTNLQK---- 228

Query: 382 LLHIVGRGQEGRELLEECLLITEKYKGKE-HPSFVTHLLNLAASYSRSKNFVEAERLLRI 440
                         L + L   ++ K K     F+   +        SK+  +   L   
Sbjct: 229 -------------ALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREK 275

Query: 441 CLDIMTKTV--GPDDQSISFPMLHLGITLYHLNRDKEAEK 478
             +   + +     +      +  + +   H  RD   E 
Sbjct: 276 LEEQFKELLFQKAFNSQQLVHVTVINLFQLHHLRDFSNET 315

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 7e-04
 Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 15/156 (9%)

Query: 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349
           L++ G L   +     A   FS +   ++++             ++        N  EA 
Sbjct: 8   LWNEGVLAADKKDWKGALDAFSAVQDPHSRIC-----------FNIGCMYTILKNMTEAE 56

Query: 350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409
           + + +++   K          ++          +  +   +E    L    LI  K  G 
Sbjct: 57  KAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDL---KEALIQLRGNQLIDYKILGL 113

Query: 410 EHPSFVTHLL-NLAASYSRSKNFVEAERLLRICLDI 444
           +   F   +L N+A  Y++ + + +AE  L +   +
Sbjct: 114 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 26/134 (19%), Positives = 36/134 (26%), Gaps = 20/134 (14%)

Query: 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI--------MENMRID---- 378
           A  +      A G  E+A      ALR  +      L D          +   ++     
Sbjct: 13  AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTA 72

Query: 379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438
            AE     GR       LE            EHP        L  +Y  S    +A    
Sbjct: 73  KAEAEIACGRASAVIAELEALT--------FEHPYREPLWTQLITAYYLSDRQSDALGAY 124

Query: 439 RICLDIMTKTVGPD 452
           R     +   +G D
Sbjct: 125 RRVKTTLADDLGID 138

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 41/321 (12%), Positives = 89/321 (27%), Gaps = 33/321 (10%)

Query: 195 LKDDEPLLDA-ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK 253
            +++ PL D       G       +   ++L+++  +   + ++       + +   +  
Sbjct: 10  FEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ-QDPKH-------MEAWQYLGT 61

Query: 254 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI 313
                 +   A+    R + +   N+    A  V            E          +  
Sbjct: 62  TQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA 121

Query: 314 LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI-- 371
             +     G     +G +   L      +    E  EL+  A+R+   S    +   +  
Sbjct: 122 HLVTPAEEGAGGAGLGPSKRILGSLLS-DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180

Query: 372 -----------------MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF 414
                              ++R +   L + +G         EE +    +   +  P +
Sbjct: 181 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL-ELQPGY 239

Query: 415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP---MLHLGITLYHLN 471
           +    NL  S        EA       L++  K+ GP  +  +        L + L  L 
Sbjct: 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 299

Query: 472 RDKEAEKLVLEALYIREIAFG 492
           +           L      FG
Sbjct: 300 QSDAYGAADARDLSTLLTMFG 320

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 22/147 (14%), Positives = 44/147 (29%), Gaps = 25/147 (17%)

Query: 341 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 400
           + G  ++A+EL  +A++        SL        R    ELL I G  +   E L + +
Sbjct: 8   SEGQLQQALELLIEAIK--ASPKDASL--------RSSFIELLCIDGDFERADEQLMQSI 57

Query: 401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM 460
                   K  P ++     L      ++   +  +                +       
Sbjct: 58  --------KLFPEYLPGASQLRHLVKAAQARKDFAQGAA-------TAKVLGENEELTKS 102

Query: 461 LHLGITLYHLNRDKEAEKLVLEALYIR 487
           L            ++  +L L+   +R
Sbjct: 103 LVSFNLSMVSQDYEQVSELALQIEELR 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	519
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.96
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.94
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.94
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.91
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.91
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.82
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.82
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.78
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.76
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.75
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.74
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.74
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.73
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.43
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.43
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.39
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.38
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.37
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.37
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.34
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.33
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.33
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.29
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.26
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.26
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.25
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.25
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.24
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.24
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.24
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.22
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.22
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.19
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.18
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.17
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.15
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.09
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.05
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.02
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.0
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.91
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.86
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.61
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.59
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.46
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.4
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.82
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.82
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.31
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.28
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	95.11
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	94.42
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	93.97
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	89.51
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	89.47
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	87.45
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	86.81
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	86.62
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	84.99
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	84.53
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	84.16

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-32  Score=255.71  Aligned_cols=326  Identities=16%  Similarity=0.163  Sum_probs=275.8

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchH
Q 010063          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL  201 (519)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  201 (519)
                      +..|..+++.|++++|+..++++++.          .|..+.++..+|.++...|++++|+..++++++..       |.
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~----------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~   65 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQ----------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-------PL   65 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CC
Confidence            45788899999999999999999987          77778899999999999999999999999998875       44


Q ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHh------------------------------cC-------------
Q 010063          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR------------------------------YG-------------  238 (519)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------------------------~~-------------  238 (519)
                      ...++..+|.++...|++++|+..+.++.......                              ..             
T Consensus        66 ~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (388)
T d1w3ba_          66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL  145 (388)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            45679999999999999999999998887641000                              00             


Q ss_pred             -----------------CCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCC
Q 010063          239 -----------------KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG  301 (519)
Q Consensus       239 -----------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  301 (519)
                                       ...|....++..+|..+...|++++|...++++++.        +|....++..+|.++...|
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~  217 (388)
T d1w3ba_         146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEAR  217 (388)
T ss_dssp             HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTT
T ss_pred             cccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHh--------CcccHHHHHHHhhhhhccc
Confidence                             001122466788899999999999999999999986        5667889999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHH
Q 010063          302 KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE  381 (519)
Q Consensus       302 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~  381 (519)
                      ++++|+..++++...        .+.....+..+|.++...|++++|+..|++++++       .|+.   ..++..+|.
T Consensus       218 ~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~p~~---~~~~~~l~~  279 (388)
T d1w3ba_         218 IFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-------QPHF---PDAYCNLAN  279 (388)
T ss_dssp             CTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------CSSC---HHHHHHHHH
T ss_pred             cHHHHHHHHHHhHHH--------hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC---HHHHHHHHH
Confidence            999999999998875        3445567889999999999999999999999986       3333   346788999


Q ss_pred             HHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHH
Q 010063          382 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML  461 (519)
Q Consensus       382 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  461 (519)
                      ++...|++++|+..+++++..        .|.....+..+|.++...|++++|+.+|+++++        .+|+...++.
T Consensus       280 ~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--------~~p~~~~~~~  343 (388)
T d1w3ba_         280 ALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRKALE--------VFPEFAAAHS  343 (388)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--------SCTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHhhhcc--------CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHH--------hCCCCHHHHH
Confidence            999999999999999998764        344567788999999999999999999999987        3566778899


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhh
Q 010063          462 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLL  516 (519)
Q Consensus       462 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~  516 (519)
                      .+|.+|..+|++++|+.+|++++++.     |++     ..++.+||.+|.++||
T Consensus       344 ~la~~~~~~g~~~~A~~~~~~al~l~-----P~~-----~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         344 NLASVLQQQGKLQEALMHYKEAIRIS-----PTF-----ADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHTTC-----TTC-----HHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC-----HHHHHHHHHHHHHcCC
Confidence            99999999999999999999998752     333     3558999999999987

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.4e-26  Score=217.98  Aligned_cols=294  Identities=16%  Similarity=0.200  Sum_probs=248.9

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhc---
Q 010063          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL---  195 (519)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---  195 (519)
                      ..+...+..+...|++++|+..++++++.          .|..+.++..+|.+|...|++++|+..+..+.......   
T Consensus        34 ~~~~~la~~~~~~~~~~~A~~~~~~al~~----------~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  103 (388)
T d1w3ba_          34 GVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG  103 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHhhhhccccccccccccccccccccccc
Confidence            34677889999999999999999999998          77788999999999999999999999988776532100   


Q ss_pred             ----------------------------------------------------------CCCchHHHHHHHHHHHHHHccc
Q 010063          196 ----------------------------------------------------------KDDEPLLDAILLHMGSMYSTLE  217 (519)
Q Consensus       196 ----------------------------------------------------------~~~~~~~~~~~~~l~~~~~~~g  217 (519)
                                                                                ....|....++..+|..+...|
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  183 (388)
T d1w3ba_         104 YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG  183 (388)
T ss_dssp             HHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccC
Confidence                                                                      0001122355778899999999


Q ss_pred             cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 010063          218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF  297 (519)
Q Consensus       218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  297 (519)
                      ++++|...+++++..        +|....++..+|.++...|++++|+..++++...        .+.....+..+|.++
T Consensus       184 ~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~  247 (388)
T d1w3ba_         184 EIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVY  247 (388)
T ss_dssp             CHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHh--------CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHH--------hhhHHHHHHHHHHHH
Confidence            999999999999876        2344677889999999999999999999999876        455677889999999


Q ss_pred             HhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHH
Q 010063          298 IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI  377 (519)
Q Consensus       298 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  377 (519)
                      ...|++++|+..|++++++        .|....++..+|.++...|++++|+..+++++..       .+..   ...+.
T Consensus       248 ~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~---~~~~~  309 (388)
T d1w3ba_         248 YEQGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-------CPTH---ADSLN  309 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHHT--------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-------CTTC---HHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-------CCcc---chhhh
Confidence            9999999999999999984        4566678999999999999999999999998876       2333   34568


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchh
Q 010063          378 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS  457 (519)
Q Consensus       378 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  457 (519)
                      .++.++...|++++|+..|++++++        .|....++..+|.+|...|++++|+.+|++++++        +|+..
T Consensus       310 ~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--------~P~~~  373 (388)
T d1w3ba_         310 NLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFA  373 (388)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHTTS--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--------CTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence            8999999999999999999999863        5666788999999999999999999999999973        46677


Q ss_pred             HHHHHHHHHHHhcCC
Q 010063          458 FPMLHLGITLYHLNR  472 (519)
Q Consensus       458 ~~~~~la~~~~~~g~  472 (519)
                      .++.++|.+|..+||
T Consensus       374 ~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         374 DAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHcCC
Confidence            889999999999886

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2.6e-23  Score=193.27  Aligned_cols=341  Identities=13%  Similarity=0.043  Sum_probs=276.6

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      ..-++..+...|++++|+.+++++++..     +....+....++..+|.++...|++++|+..+++++.+.... ++.+
T Consensus        15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~-----~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~   88 (366)
T d1hz4a_          15 NALRAQVAINDGNPDEAERLAKLALEEL-----PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-DVWH   88 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTC-----CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhC-----cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-cchH
Confidence            4446788899999999999999999861     122234456788999999999999999999999999887663 4556


Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (519)
                      .....+..++.++...|++..|...+.+++.+.........+.....+..+|.++...|+++.|...+.++.......  
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~--  166 (366)
T d1hz4a_          89 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY--  166 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhh--
Confidence            677778999999999999999999999999998887667777778888999999999999999999999998875443  


Q ss_pred             CCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (519)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (519)
                       .......++..++..+...+++.++...+.++........ ...+.....+..++.++...|++++|...+++++... 
T Consensus       167 -~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-  243 (366)
T d1hz4a_         167 -QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK-YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE-  243 (366)
T ss_dssp             -CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC-
T ss_pred             -hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc-
Confidence             2445667888899999999999999999999998876542 2334566678889999999999999999999887652 


Q ss_pred             hhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 010063          361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  440 (519)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  440 (519)
                           ..+++.....+.++|.++...|++++|...+++++......  ...+....++..+|.+|..+|++++|.+.+++
T Consensus       244 -----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~  316 (366)
T d1hz4a_         244 -----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD  316 (366)
T ss_dssp             -----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             -----cccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc--ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                 23344455667889999999999999999999999988765  36678889999999999999999999999999


Q ss_pred             HHHHHHHhcCCC-CcchhHHHHHHHHHHHhcCChHHHHHH
Q 010063          441 CLDIMTKTVGPD-DQSISFPMLHLGITLYHLNRDKEAEKL  479 (519)
Q Consensus       441 al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~  479 (519)
                      ++.+..+..... .......+..+...+...++.+++...
T Consensus       317 Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         317 ALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            999887652110 011223344555566677888887664

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2.6e-23  Score=193.35  Aligned_cols=316  Identities=11%  Similarity=0.053  Sum_probs=268.3

Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcC
Q 010063          159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG  238 (519)
Q Consensus       159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  238 (519)
                      +..++.....|.++...|++++|+..+++++.....  .+.+....++..+|.++...|++++|+..+++++.+....  
T Consensus         9 ~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~--~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~--   84 (366)
T d1hz4a_           9 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP--GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--   84 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--
T ss_pred             chhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC--CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh--
Confidence            345667777899999999999999999999887532  2334456678899999999999999999999999987764  


Q ss_pred             CCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 010063          239 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT  318 (519)
Q Consensus       239 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  318 (519)
                      ++.+....++..++.++...|++..|...+.+++.+.........+.....+..+|.++...|+++.|...+.+++....
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~  164 (366)
T d1hz4a_          85 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  164 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhh
Confidence            45567788899999999999999999999999999998877767777788889999999999999999999999998765


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010063          319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  398 (519)
Q Consensus       319 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  398 (519)
                      ..   .......++..++..+...+++.++...+.++.......   ....+....++..++.++...|++++|...+++
T Consensus       165 ~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  238 (366)
T d1hz4a_         165 SY---QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG---KYHSDWISNANKVRVIYWQMTGDKAAAANWLRH  238 (366)
T ss_dssp             TS---CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hh---hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh---cccCchHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            43   234456678889999999999999999999999987763   445566667778899999999999999999998


Q ss_pred             HHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHH
Q 010063          399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK  478 (519)
Q Consensus       399 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  478 (519)
                      ++.+.    ....+.....+.++|.++...|++++|..++++++...+..  ...|....++..+|.+|..+|++++|.+
T Consensus       239 ~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~  312 (366)
T d1hz4a_         239 TAKPE----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDAQR  312 (366)
T ss_dssp             SCCCC----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHhc----cccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc--ccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            76542    22345566778899999999999999999999999988764  4567888899999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 010063          479 LVLEALYIREIA  490 (519)
Q Consensus       479 ~~~~a~~~~~~~  490 (519)
                      .+++++++.++.
T Consensus       313 ~l~~Al~l~~~~  324 (366)
T d1hz4a_         313 VLLDALKLANRT  324 (366)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhc
Confidence            999999998654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.6e-23  Score=187.66  Aligned_cols=286  Identities=14%  Similarity=0.051  Sum_probs=217.7

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      .+..|..++..|++++|+..|+++++.          .|..+.++..+|.++...|++++|+..+.+++++.       |
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~----------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p   84 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQ----------DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-------P   84 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHS----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-------c
Confidence            356899999999999999999999987          78889999999999999999999999999998875       3


Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCC-HHHH------HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS-ILLV------TSLLGMAKVLGSIGRAKKAVEIYHRVIT  273 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~  273 (519)
                      .....+..+|.++...|++++|+..+++++........... ....      .........+...+.+.+|...+.+++.
T Consensus        85 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~  164 (323)
T d1fcha_          85 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR  164 (323)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence            34556899999999999999999999999875322100000 0000      1111222334556778889999999887


Q ss_pred             HHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 010063          274 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYK  353 (519)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  353 (519)
                      +.     ++ .....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..|+
T Consensus       165 ~~-----p~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  230 (323)
T d1fcha_         165 LD-----PT-SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLGATLANGNQSEEAVAAYR  230 (323)
T ss_dssp             HS-----TT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             Hh-----hc-ccccccchhhHHHHHHHHHHhhhhccccccccc--------ccccccchhhhhhcccccccchhHHHHHH
Confidence            62     11 223577889999999999999999999999885        45666789999999999999999999999


Q ss_pred             HHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC---CChhHHHHHHHHHHHHHhccC
Q 010063          354 KALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK---EHPSFVTHLLNLAASYSRSKN  430 (519)
Q Consensus       354 ~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~  430 (519)
                      ++++.       .|+.   ..++.++|.+|...|++++|+..|++++++.....+.   .......++..++.++...|+
T Consensus       231 ~al~~-------~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~  300 (323)
T d1fcha_         231 RALEL-------QPGY---IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ  300 (323)
T ss_dssp             HHHHH-------CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHH-------hhcc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCC
Confidence            99987       3333   4567899999999999999999999999987543221   111222455677778877888


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 010063          431 FVEAERLLRICLDIMTK  447 (519)
Q Consensus       431 ~~~A~~~~~~al~~~~~  447 (519)
                      .+.+...-.+.++...+
T Consensus       301 ~d~~~~~~~~~l~~l~~  317 (323)
T d1fcha_         301 SDAYGAADARDLSTLLT  317 (323)
T ss_dssp             GGGHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhCHHHHHH
Confidence            77666665555544433

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.2e-23  Score=186.99  Aligned_cols=272  Identities=15%  Similarity=0.129  Sum_probs=208.5

Q ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (519)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (519)
                      .+..|..+...|++++|+..|+++++.        +|....++..+|.++...|++++|+..+.+++++        .|.
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~   85 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--------KPD   85 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--------ccc
Confidence            467899999999999999999999874        3455778999999999999999999999999987        456


Q ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCC-hhHHH------HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND-GRVGM------AMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      ....+..+|.+|...|++++|+..+++++........... .....      ........+...+.+.+|...+.+++..
T Consensus        86 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~  165 (323)
T d1fcha_          86 NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL  165 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999875322100000 00000      1111222344567788999999998876


Q ss_pred             HHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH
Q 010063          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  438 (519)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  438 (519)
                      .       ++... ..++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+.+|
T Consensus       166 ~-------p~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~  229 (323)
T d1fcha_         166 D-------PTSID-PDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLGATLANGNQSEEAVAAY  229 (323)
T ss_dssp             S-------TTSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             h-------hcccc-cccchhhHHHHHHHHHHhhhhccccccccc--------ccccccchhhhhhcccccccchhHHHHH
Confidence            2       22221 346688999999999999999999999874        3555678999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHHhhhc
Q 010063          439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVG-KLFCFVLFGLVWFCLLLY  517 (519)
Q Consensus       439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~lg~~  517 (519)
                      ++++++        +|....++.++|.+|..+|++++|+.+|++++++.....+....... ....+..++.++..+|++
T Consensus       230 ~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~  301 (323)
T d1fcha_         230 RRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS  301 (323)
T ss_dssp             HHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHH--------hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCH
Confidence            999984        35567789999999999999999999999999997654333222221 124566788888877765

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-18  Score=156.99  Aligned_cols=261  Identities=10%  Similarity=-0.019  Sum_probs=206.0

Q ss_pred             ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHh
Q 010063          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLESR  236 (519)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~  236 (519)
                      .|....++..+|.++...+.+++|+..+++++++.       |....+|+..|.++...| ++++|+.+++++++.    
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-------P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~----  107 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----  107 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-------CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH----
Confidence            67888999999999999999999999999999986       666778999999999877 599999999999987    


Q ss_pred             cCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063          237 YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (519)
Q Consensus       237 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (519)
                          +|....++..+|.++..+|++++|+..+++++++        +|....++.++|.++...|++++|+..+++++++
T Consensus       108 ----~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--------dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~  175 (315)
T d2h6fa1         108 ----QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE  175 (315)
T ss_dssp             ----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             ----HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--------hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                3555889999999999999999999999999997        6777899999999999999999999999999996


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChH
Q 010063          317 YTKVYGENDGRVGMAMCSLAHAKCANGN------AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ  390 (519)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  390 (519)
                              +|....+++++|.++...+.      +++|+..+.+++..       .|++   ..++..++.++... ..+
T Consensus       176 --------~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~-------~P~~---~~~~~~l~~ll~~~-~~~  236 (315)
T d2h6fa1         176 --------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL-------VPHN---ESAWNYLKGILQDR-GLS  236 (315)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH-------STTC---HHHHHHHHHHHTTT-CGG
T ss_pred             --------CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh-------CCCc---hHHHHHHHHHHHhc-ChH
Confidence                    56667789999999988776      67899999999887       3444   34567788776544 468


Q ss_pred             HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHH
Q 010063          391 EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR--SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT  466 (519)
Q Consensus       391 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  466 (519)
                      ++...+++++++...      +....++..++.+|..  .++.+.+...+++++.+.......-+|.....|..++..
T Consensus       237 ~~~~~~~~~~~l~~~------~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~  308 (315)
T d2h6fa1         237 KYPNLLNQLLDLQPS------HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRS  308 (315)
T ss_dssp             GCHHHHHHHHHHTTT------CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC------cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            888888888775321      1223455566666654  356677888888888776553323334443334444443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.1e-18  Score=154.37  Aligned_cols=263  Identities=11%  Similarity=0.022  Sum_probs=209.3

Q ss_pred             chHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHH
Q 010063          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILEL  277 (519)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~  277 (519)
                      .|....++..+|.++...+.+++|+..+++++++        .|....++++.|.++...| ++++|+..+++++++   
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~---  107 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE---  107 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH--------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---
Confidence            4788888999999999999999999999999997        3555788999999999987 599999999999998   


Q ss_pred             hcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010063          278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  357 (519)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  357 (519)
                           +|....++.++|.++..+|++++|+..+.+++++        +|....++.++|.++...|++++|+..++++++
T Consensus       108 -----~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--------dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~  174 (315)
T d2h6fa1         108 -----QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK  174 (315)
T ss_dssp             -----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             -----HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--------hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                 6778999999999999999999999999999986        566778999999999999999999999999999


Q ss_pred             HHHhhccCCCCchHHHHHHHHHHHHHHHcCC------hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCH
Q 010063          358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGR------GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF  431 (519)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  431 (519)
                      +       .|.+   ..+++++|.++...+.      +++|+..+.+++.+        .|....++..++.++...| .
T Consensus       175 ~-------~p~n---~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~--------~P~~~~~~~~l~~ll~~~~-~  235 (315)
T d2h6fa1         175 E-------DVRN---NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRG-L  235 (315)
T ss_dssp             H-------CTTC---HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTC-G
T ss_pred             H-------CCcc---HHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh--------CCCchHHHHHHHHHHHhcC-h
Confidence            8       2333   4567899999888776      46788888888875        3555677888888876554 5


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh--cCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHH
Q 010063          432 VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH--LNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGL  509 (519)
Q Consensus       432 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~  509 (519)
                      +++...+++++++.     ++ +....++..++.+|..  .++.+.+...+.+++++.+.....-  ++....-|..++.
T Consensus       236 ~~~~~~~~~~~~l~-----~~-~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~~~--DpiR~~yw~~~~~  307 (315)
T d2h6fa1         236 SKYPNLLNQLLDLQ-----PS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGR  307 (315)
T ss_dssp             GGCHHHHHHHHHHT-----TT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-----CC-cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHH
Confidence            78888888887752     22 2334455667777754  4777889999999998876543222  2222344555665


Q ss_pred             HHH
Q 010063          510 VWF  512 (519)
Q Consensus       510 ~~~  512 (519)
                      ...
T Consensus       308 ~l~  310 (315)
T d2h6fa1         308 SLQ  310 (315)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=2.7e-17  Score=146.76  Aligned_cols=229  Identities=12%  Similarity=0.091  Sum_probs=177.6

Q ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC
Q 010063          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT  281 (519)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  281 (519)
                      .+..|...|.+|...|++++|+..|.+++++....  .+.+..+.++.++|.+|...|++++|+..+++++++.....  
T Consensus        36 Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~--~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~--  111 (290)
T d1qqea_          36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--  111 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcc--
Confidence            34567788999999999999999999999998774  45567889999999999999999999999999999988764  


Q ss_pred             CChhhHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063          282 ESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (519)
Q Consensus       282 ~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (519)
                      .......++..+|.+|.. .|++++|+.++++++++....  ...+....++.++|.++..+|++++|+..|++++....
T Consensus       112 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~--~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~  189 (290)
T d1qqea_         112 QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM  189 (290)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred             cchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc--CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCc
Confidence            445567788999998865 699999999999999998765  23455677899999999999999999999999988754


Q ss_pred             hhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh--ccCHHHHHHHH
Q 010063          361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR--SKNFVEAERLL  438 (519)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~  438 (519)
                      ..   ..........+...+.++...|++..|...+++++++.....   .......+..+..++..  .+.+++|+..|
T Consensus       190 ~~---~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~---~sre~~~l~~l~~a~~~~d~e~~~eai~~y  263 (290)
T d1qqea_         190 GN---RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRESNFLKSLIDAVNEGDSEQLSEHCKEF  263 (290)
T ss_dssp             SC---TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred             cc---hhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc---chHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            32   222334455667889999999999999999999877543321   11122344556666554  35578888877


Q ss_pred             HHHH
Q 010063          439 RICL  442 (519)
Q Consensus       439 ~~al  442 (519)
                      .++.
T Consensus       264 ~~~~  267 (290)
T d1qqea_         264 DNFM  267 (290)
T ss_dssp             TTSS
T ss_pred             HHHh
Confidence            6543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=5.2e-17  Score=144.90  Aligned_cols=224  Identities=13%  Similarity=0.019  Sum_probs=172.9

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063          248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  327 (519)
Q Consensus       248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  327 (519)
                      +...|.+|...|++++|+..|.+++++..+..  +.+..+.++.++|.+|..+|++++|+..+++++++.....  ....
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~--~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~--~~~~  115 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--QFRR  115 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcc--cchh
Confidence            33447788899999999999999999988764  4567789999999999999999999999999999988762  3445


Q ss_pred             HHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 010063          328 VGMAMCSLAHAKCA-NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  406 (519)
Q Consensus       328 ~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  406 (519)
                      ...++..+|.++.. .|++++|+.+|++++++....    ..++....++.++|.++..+|++++|+..|++++......
T Consensus       116 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~----~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~  191 (290)
T d1qqea_         116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD----QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc----CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccc
Confidence            67788899998865 699999999999999998763    4566677889999999999999999999999998865432


Q ss_pred             hCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh--cCChHHHHHHHHHH
Q 010063          407 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH--LNRDKEAEKLVLEA  483 (519)
Q Consensus       407 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a  483 (519)
                      . .........+...+.++...|+++.|...++++.++.....   .......+..+..++..  .+.+++|+..|.++
T Consensus       192 ~-~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~---~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~  266 (290)
T d1qqea_         192 R-LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (290)
T ss_dssp             T-TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             h-hhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc---chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            1 12334556678889999999999999999999887532211   11112344556666554  34577777777543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=4.4e-17  Score=143.22  Aligned_cols=220  Identities=10%  Similarity=0.042  Sum_probs=155.5

Q ss_pred             ChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010063          177 DLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG  256 (519)
Q Consensus       177 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  256 (519)
                      +.+.|+..+++++...   ...++..+.+++.+|.+|...|++++|+..|++++.+.        |....++.++|.+|.
T Consensus        14 ~~e~al~~~~e~l~~~---~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~--------p~~~~a~~~lg~~~~   82 (259)
T d1xnfa_          14 QQEVILARMEQILASR---ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--------PDMPEVFNYLGIYLT   82 (259)
T ss_dssp             HHHHHHHHHHHHHTSS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh---hcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC--------CCCHHHHhhhchHHH
Confidence            3445555555554332   33457788889999999999999999999999999872        333678999999999


Q ss_pred             hcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 010063          257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA  336 (519)
Q Consensus       257 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  336 (519)
                      ..|++++|+..|++++++        .|....++.++|.++...|++++|+..+++++++        .|........++
T Consensus        83 ~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~  146 (259)
T d1xnfa_          83 QAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--------DPNDPFRSLWLY  146 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred             HHHHHHHhhhhhhHHHHH--------HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--------ccccHHHHHHHH
Confidence            999999999999999997        5666789999999999999999999999999986        233333455566


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhhCCCCh
Q 010063          337 HAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHP  412 (519)
Q Consensus       337 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~  412 (519)
                      ..+...+..+.+..........       ........     +...+..    .+..+.+...+......        .+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~  206 (259)
T d1xnfa_         147 LAEQKLDEKQAKEVLKQHFEKS-------DKEQWGWN-----IVEFYLGNISEQTLMERLKADATDNTSL--------AE  206 (259)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHS-------CCCSTHHH-----HHHHHTTSSCHHHHHHHHHHHCCSHHHH--------HH
T ss_pred             HHHHHhhhHHHHHHHHHHhhcc-------chhhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHhhhc--------Cc
Confidence            6666666655554444333222       22222211     1122211    11223333333332222        34


Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063          413 SFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (519)
Q Consensus       413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (519)
                      ....++..+|.+|...|++++|+.+|++++.
T Consensus       207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  237 (259)
T d1xnfa_         207 HLSETNFYLGKYYLSLGDLDSATALFKLAVA  237 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            5567889999999999999999999999987

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=8.6e-18  Score=153.74  Aligned_cols=278  Identities=10%  Similarity=-0.031  Sum_probs=211.6

Q ss_pred             HHHHHHHHcCCh-hHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh----------cCChHHHHHHHHHHHhh
Q 010063          123 NEVKSMIMMGNK-NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY----------IGDLKFVQSLLDMMSGI  191 (519)
Q Consensus       123 ~~~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~  191 (519)
                      .........|.+ ++|+++++++++.          .|+...++...+.++..          .|++++|+.++++++..
T Consensus        33 ~~~~~~~~~~~~~~~al~~~~~~l~~----------~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~  102 (334)
T d1dcea1          33 QAVFQKRQAGELDESVLELTSQILGA----------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV  102 (334)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHH----------CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh
Confidence            333344455554 8999999999998          77777776666655443          44477888888888765


Q ss_pred             hhhcCCCchHHHHHHHHHHHHHHccc--cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 010063          192 VDSLKDDEPLLDAILLHMGSMYSTLE--NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYH  269 (519)
Q Consensus       192 ~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  269 (519)
                      .       |....++..+|.++...+  ++++|+..+++++...       ...........|.++...+.+++|+..++
T Consensus       103 ~-------pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-------~~~~~~~~~~~~~~~~~~~~~~~Al~~~~  168 (334)
T d1dcea1         103 N-------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-------ERNFHCWDYRRFVAAQAAVAPAEELAFTD  168 (334)
T ss_dssp             C-------TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred             C-------CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-------chhhhhhhhHHHHHHHhccccHHHHHHHH
Confidence            4       444556788888877765  4899999999999862       12223334577899999999999999999


Q ss_pred             HHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHH
Q 010063          270 RVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV  349 (519)
Q Consensus       270 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  349 (519)
                      +++++        +|....+++++|.++...|++++|...+++++++....        .    .....+...+..+++.
T Consensus       169 ~~i~~--------~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~----~~~~~~~~l~~~~~a~  228 (334)
T d1dcea1         169 SLITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE--------L----ELVQNAFFTDPNDQSA  228 (334)
T ss_dssp             TTTTT--------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH--------H----HHHHHHHHHCSSCSHH
T ss_pred             HHHHc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH--------H----HHHHHHHHhcchhHHH
Confidence            99876        67778999999999999999999999998888865322        1    2233445667788899


Q ss_pred             HHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcc
Q 010063          350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK  429 (519)
Q Consensus       350 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  429 (519)
                      ..+.+++..       .+....   .+..++.++...|++.+|+..+.+++.        .+|....++..+|.++...|
T Consensus       229 ~~~~~~l~~-------~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~~  290 (334)
T d1dcea1         229 WFYHRWLLG-------RAEPLF---RCELSVEKSTVLQSELESCKELQELEP--------ENKWCLLTIILLMRALDPLL  290 (334)
T ss_dssp             HHHHHHHHS-------CCCCSS---SCCCCHHHHHHHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHCTGG
T ss_pred             HHHHHHHHh-------Ccchhh---HHHHHHHHHHHHhhHHHHHHHHHHHHh--------hCchHHHHHHHHHHHHHHCC
Confidence            988888765       222221   235678888899999999999988765        67888999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhc
Q 010063          430 NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL  470 (519)
Q Consensus       430 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  470 (519)
                      ++++|+.+|++++++        +|.....+..|+..+...
T Consensus       291 ~~~eA~~~~~~ai~l--------dP~~~~y~~~L~~~~~~e  323 (334)
T d1dcea1         291 YEKETLQYFSTLKAV--------DPMRAAYLDDLRSKFLLE  323 (334)
T ss_dssp             GHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH--------CcccHHHHHHHHHHHhHh
Confidence            999999999999985        466677777887777653

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=6.4e-18  Score=154.64  Aligned_cols=269  Identities=7%  Similarity=-0.074  Sum_probs=205.2

Q ss_pred             hcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHH----------HHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHH
Q 010063          174 YIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM----------GSMYSTLENYEKSMLVYQRVINVLESRYGKTSIL  243 (519)
Q Consensus       174 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  243 (519)
                      ..+..++|+..+++++...    ++.   ..+|+..          +..+...|++.+|+.++++++..        +|.
T Consensus        41 ~~~~~~~al~~~~~~l~~~----P~~---~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--------~pk  105 (334)
T d1dcea1          41 AGELDESVLELTSQILGAN----PDF---ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPK  105 (334)
T ss_dssp             TTCCSHHHHHHHHHHHHHC----TTC---HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------CTT
T ss_pred             cccccHHHHHHHHHHHHHC----CCc---HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--------CCC
Confidence            3344589999999998764    333   3333333          33455566788899999988875        244


Q ss_pred             HHHHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063          244 LVTSLLGMAKVLGSIG--RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (519)
Q Consensus       244 ~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (519)
                      ...++..+|.++...+  ++++|+..++++++.       ++..........|.++...|++++|+..+++++.+     
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~-------~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~-----  173 (334)
T d1dcea1         106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEA-------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-----  173 (334)
T ss_dssp             CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT-----
T ss_pred             cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhh-------CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc-----
Confidence            4667778888877766  489999999999997       23333334567889999999999999999999874     


Q ss_pred             CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010063          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  401 (519)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  401 (519)
                         +|....++.++|.++...|++++|...+.+++.+....              ......+...+..+++...+.+++.
T Consensus       174 ---~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~a~~~~~~~l~  236 (334)
T d1dcea1         174 ---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE--------------LELVQNAFFTDPNDQSAWFYHRWLL  236 (334)
T ss_dssp             ---TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH--------------HHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred             ---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH--------------HHHHHHHHHhcchhHHHHHHHHHHH
Confidence               67777899999999999999999999998888875431              2344456677888999999998876


Q ss_pred             HHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHH
Q 010063          402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  481 (519)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  481 (519)
                      .        .|.....+..+|.++...|++.+|+..+.+++.        .+|....++..+|.++...|++++|+++|+
T Consensus       237 ~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~  300 (334)
T d1dcea1         237 G--------RAEPLFRCELSVEKSTVLQSELESCKELQELEP--------ENKWCLLTIILLMRALDPLLYEKETLQYFS  300 (334)
T ss_dssp             S--------CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHCTGGGHHHHHHHHH
T ss_pred             h--------CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh--------hCchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3        233334556778888999999999999988875        578889999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcchhhHHHHHHHHHHH
Q 010063          482 EALYIREIAFGKDSLPVGKLFCFVLFGLVWF  512 (519)
Q Consensus       482 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  512 (519)
                      +++++.        |.  ....|.+|+..+.
T Consensus       301 ~ai~ld--------P~--~~~y~~~L~~~~~  321 (334)
T d1dcea1         301 TLKAVD--------PM--RAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHC--------GG--GHHHHHHHHHHHH
T ss_pred             HHHHHC--------cc--cHHHHHHHHHHHh
Confidence            999863        22  2345777777665

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.7e-16  Score=139.47  Aligned_cols=227  Identities=15%  Similarity=0.051  Sum_probs=158.3

Q ss_pred             cccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 010063          216 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  295 (519)
Q Consensus       216 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  295 (519)
                      .++.+.|+..+++++...    ...++..+.+++.+|.+|...|++++|+..|++++++        .|..+.+++++|.
T Consensus        12 ~~~~e~al~~~~e~l~~~----~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~lg~   79 (259)
T d1xnfa_          12 TLQQEVILARMEQILASR----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGI   79 (259)
T ss_dssp             CHHHHHHHHHHHHHHTSS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhh----hcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--------CCCCHHHHhhhch
Confidence            345566666666654421    1234567889999999999999999999999999998        5667889999999


Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHH
Q 010063          296 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM  375 (519)
Q Consensus       296 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  375 (519)
                      ++..+|++++|+..|++++++        +|....++.++|.++...|++++|+..++++++.       .+.+..   .
T Consensus        80 ~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~~~---~  141 (259)
T d1xnfa_          80 YLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-------DPNDPF---R  141 (259)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHH---H
T ss_pred             HHHHHHHHHHhhhhhhHHHHH--------HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh-------ccccHH---H
Confidence            999999999999999999986        4555668999999999999999999999999987       233332   2


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 010063          376 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS  455 (519)
Q Consensus       376 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  455 (519)
                      ...++..+...+..+.+.........     .....+........++. ....+..+.+...+......        .|.
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~  207 (259)
T d1xnfa_         142 SLWLYLAEQKLDEKQAKEVLKQHFEK-----SDKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSL--------AEH  207 (259)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHH-----SCCCSTHHHHHHHHTTS-SCHHHHHHHHHHHCCSHHHH--------HHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhhc-----cchhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhc--------Ccc
Confidence            34456666666655444443333222     11222222111111111 11122344444444443332        245


Q ss_pred             hhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063          456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (519)
Q Consensus       456 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (519)
                      ...++.++|.+|..+|++++|+.+|++++..
T Consensus       208 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         208 LSETNFYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            5678899999999999999999999999863

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.3e-14  Score=137.37  Aligned_cols=282  Identities=9%  Similarity=-0.063  Sum_probs=161.8

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHc
Q 010063          136 DAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYST  215 (519)
Q Consensus       136 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  215 (519)
                      +|++++++|+++          .|+.+.++..+|.++...|++++|   |++++...       |..+......+..+  
T Consensus         4 eA~q~~~qA~~l----------~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d-------p~~a~~~~~e~~Lw--   61 (497)
T d1ya0a1           4 QSAQYLRQAEVL----------KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD-------LEYALDKKVEQDLW--   61 (497)
T ss_dssp             HHHHHHHHHHHH----------HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC-------HHHHHHHTHHHHHH--
T ss_pred             HHHHHHHHHHHc----------CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC-------hhhHHHHhHHHHHH--
Confidence            689999999998          777888889999999999999876   77766543       44444332222221  


Q ss_pred             cccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 010063          216 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  295 (519)
Q Consensus       216 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  295 (519)
                      ...|..+++.+++..+..   ...+.....  ...++.++...+.|+.|+..+.+++.+        .+.....+.++|.
T Consensus        62 ~~~y~~~ie~~r~~~k~~---~~~~~~~~~--~~~~~~l~~a~~~Y~~ai~~l~~~~~l--------~~~~~~~~~~lg~  128 (497)
T d1ya0a1          62 NHAFKNQITTLQGQAKNR---ANPNRSEVQ--ANLSLFLEAASGFYTQLLQELCTVFNV--------DLPCRVKSSQLGI  128 (497)
T ss_dssp             HHHTHHHHHHHHHHHSCS---SCTTTTHHH--HHHHHHHHHHHHHHHHHHHHHTC-------------------------
T ss_pred             HHHHHHHHHHHHHhcccc---cCccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCC--------ChhhHHHHHHhHH
Confidence            223445555555544211   011111111  122344444555666666666555544        3556778889999


Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHH
Q 010063          296 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM  375 (519)
Q Consensus       296 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  375 (519)
                      .+...|++++|...+.+++...          ...++.++|.++...|++++|+.+|++|+++       .|+.   ...
T Consensus       129 ~~~~~~~~~~A~~~~~~al~~~----------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l-------~P~~---~~~  188 (497)
T d1ya0a1         129 ISNKQTHTSAIVKPQSSSCSYI----------CQHCLVHLGDIARYRNQTSQAESYYRHAAQL-------VPSN---GQP  188 (497)
T ss_dssp             --------------CCHHHHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTB---SHH
T ss_pred             HHHhCCCHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-------CCCc---hHH
Confidence            9999999999999999988742          3357889999999999999999999999998       3333   456


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 010063          376 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS  455 (519)
Q Consensus       376 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  455 (519)
                      +++||.++...|++.+|+.+|.+++.+        .+....++.+|+.++....+..++..            .....+.
T Consensus       189 ~~~Lg~~~~~~~~~~~A~~~y~ral~~--------~~~~~~a~~nL~~~~~~~~~~~~~~~------------~~~~~~~  248 (497)
T d1ya0a1         189 YNQLAILASSKGDHLTTIFYYCRSIAV--------KFPFPAASTNLQKALSKALESRDEVK------------TKWGVSD  248 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHSS--------SBCCHHHHHHHHHHHHHHTTSCCCCC------------SSCCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHHhhhhhhhhc------------cccccch
Confidence            799999999999999999999999874        23345688888887764332211100            0011223


Q ss_pred             hhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcC
Q 010063          456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG  492 (519)
Q Consensus       456 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  492 (519)
                      ....+..+..+++..+..+...+..++.+........
T Consensus       249 ~~~~f~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~  285 (497)
T d1ya0a1         249 FIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELLF  285 (497)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh
Confidence            3334455555566667777777777777666555543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2e-13  Score=130.75  Aligned_cols=230  Identities=8%  Similarity=0.008  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcC
Q 010063          180 FVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG  259 (519)
Q Consensus       180 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  259 (519)
                      +|.+++++++.+.       |..+.++.++|.++..+|++++|   |++++..        +|..+..+...+.+.  ..
T Consensus         4 eA~q~~~qA~~l~-------p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--------dp~~a~~~~~e~~Lw--~~   63 (497)
T d1ya0a1           4 QSAQYLRQAEVLK-------ADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--------DLEYALDKKVEQDLW--NH   63 (497)
T ss_dssp             HHHHHHHHHHHHH-------GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--------CHHHHHHHTHHHHHH--HH
T ss_pred             HHHHHHHHHHHcC-------CCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--------ChhhHHHHhHHHHHH--HH
Confidence            7889999999886       55555678899999999999886   7887764        344444433222222  11


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCChhhH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 010063          260 RAKKAVEIYHRVITILELNRGTESADLV-LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA  338 (519)
Q Consensus       260 ~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  338 (519)
                      .|..+++.+++..+.      ...+... .....++.++...+.|+.|+..+.+++.+        ++.....+.++|..
T Consensus        64 ~y~~~ie~~r~~~k~------~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l--------~~~~~~~~~~lg~~  129 (497)
T d1ya0a1          64 AFKNQITTLQGQAKN------RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV--------DLPCRVKSSQLGII  129 (497)
T ss_dssp             HTHHHHHHHHHHHSC------SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------
T ss_pred             HHHHHHHHHHHhccc------ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------ChhhHHHHHHhHHH
Confidence            233444555444321      1111111 12222344444455555555555555443        35566788999999


Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHH
Q 010063          339 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL  418 (519)
Q Consensus       339 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  418 (519)
                      +...|++++|...+.+++....            ..++.++|.++...|++++|+.+|++|+.+        .|....++
T Consensus       130 ~~~~~~~~~A~~~~~~al~~~~------------~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--------~P~~~~~~  189 (497)
T d1ya0a1         130 SNKQTHTSAIVKPQSSSCSYIC------------QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPY  189 (497)
T ss_dssp             -------------CCHHHHHHH------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHH
T ss_pred             HHhCCCHHHHHHHHHHHhCCCH------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCchHHH
Confidence            9999999999999999887632            246788999999999999999999999986        46677899


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcC
Q 010063          419 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN  471 (519)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  471 (519)
                      ++||.++...|++.+|+.+|.+++.+        .+....++.+|+.++....
T Consensus       190 ~~Lg~~~~~~~~~~~A~~~y~ral~~--------~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         190 NQLAILASSKGDHLTTIFYYCRSIAV--------KFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHSS--------SBCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999973        3556678899998887644

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=9.3e-13  Score=108.47  Aligned_cols=134  Identities=13%  Similarity=0.129  Sum_probs=111.3

Q ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (519)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (519)
                      +++.|..+...|++++|+..|.++        .+.+   ..+++++|.+|..+|++++|+..|++++++        +|.
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i--------~~~~---~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp~   68 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAV--------QDPH---SRICFNIGCMYTILKNMTEAEKAFTRSINR--------DKH   68 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS--------SSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhc--------CCCC---HHHHHHHHHHHHHcCCchhHHHHHHHHHHH--------hhh
Confidence            556799999999999999988753        1222   457889999999999999999999999997        577


Q ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh-------cC-CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010063          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV-------YG-ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  357 (519)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  357 (519)
                      .+.++.++|.++..+|++++|+..|++++...+..       .+ ........++.++|.++...|++++|++.+.+++.
T Consensus        69 ~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~  148 (192)
T d1hh8a_          69 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  148 (192)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            78999999999999999999999999999753211       00 01123467889999999999999999999999887


Q ss_pred             H
Q 010063          358 V  358 (519)
Q Consensus       358 ~  358 (519)
                      +
T Consensus       149 ~  149 (192)
T d1hh8a_         149 M  149 (192)
T ss_dssp             T
T ss_pred             c
Confidence            6

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.2e-12  Score=105.16  Aligned_cols=135  Identities=16%  Similarity=0.128  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 010063          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD  368 (519)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  368 (519)
                      .+.+.|..+...|++++|++.|.++.          ++ .+.+++++|.+|..+|++++|+..|++++++       .|+
T Consensus         7 ~l~~~g~~~~~~~d~~~Al~~~~~i~----------~~-~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l-------dp~   68 (192)
T d1hh8a_           7 SLWNEGVLAADKKDWKGALDAFSAVQ----------DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINR-------DKH   68 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS----------SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhcC----------CC-CHHHHHHHHHHHHHcCCchhHHHHHHHHHHH-------hhh
Confidence            44567999999999999999887531          12 2357899999999999999999999999998       233


Q ss_pred             chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh-------hC-CCChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 010063          369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY-------KG-KEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  440 (519)
Q Consensus       369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  440 (519)
                      .   ..++.++|.++..+|++++|+..|++++...+..       .+ ........+++++|.++...|++++|.+.+++
T Consensus        69 ~---~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~  145 (192)
T d1hh8a_          69 L---AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL  145 (192)
T ss_dssp             C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             h---hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3   5678999999999999999999999998753211       01 01223457889999999999999999999999


Q ss_pred             HHHH
Q 010063          441 CLDI  444 (519)
Q Consensus       441 al~~  444 (519)
                      ++.+
T Consensus       146 A~~~  149 (192)
T d1hh8a_         146 ATSM  149 (192)
T ss_dssp             HHTT
T ss_pred             HHhc
Confidence            8874

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.2e-11  Score=96.99  Aligned_cols=128  Identities=13%  Similarity=0.064  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (519)
                      +..+...|..++..|+|++|+..|++++++        +|....++.++|.++..+|++++|+..|++++++        
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--------   73 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------   73 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhcccc--------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--------
Confidence            455667899999999999999999999997        5778899999999999999999999999999986        


Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH--HHHcCChHHHHHHHHH
Q 010063          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL--LHIVGRGQEGRELLEE  398 (519)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~  398 (519)
                      +|....++..+|.++..+|++++|+..+++++.+       .|+++...   ..++.+  ....+.+++|+...+.
T Consensus        74 ~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~-------~p~~~~~~---~~l~~~~~~~~~~~~~~a~~~~~~  139 (159)
T d1a17a_          74 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-------KPHDKDAK---MKYQECNKIVKQKAFERAIAGDEH  139 (159)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTCHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCHHHH---HHHHHHHHHHHHHHHHHHHhCcHH
Confidence            4666778999999999999999999999999997       44454432   334433  3344445555554333

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.38  E-value=2.7e-11  Score=95.93  Aligned_cols=138  Identities=17%  Similarity=0.057  Sum_probs=104.7

Q ss_pred             HHHHHHH--HHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC----ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 010063          245 VTSLLGM--AKVLGSIGRAKKAVEIYHRVITILELNRGTE----SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT  318 (519)
Q Consensus       245 ~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  318 (519)
                      +.++..+  |..++..|+|++|+..|++++++.+......    .+..+.++.++|.+|..+|++++|+..+++++.+..
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            4455544  7888899999999999999999986653221    123467899999999999999999999999999988


Q ss_pred             HhcCCC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH
Q 010063          319 KVYGEN---DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI  385 (519)
Q Consensus       319 ~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~  385 (519)
                      +.....   .+....+++++|.+|..+|++++|+..|++++++.++.   .............++..+..
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~---~~~~~~~~~~~~~~~~~l~~  153 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER---KGETPGKERMMEVAIDRIAQ  153 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC---CSCCTTHHHHHHHHHHHHHH
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh---hchHHHHHHHHHHHHHHHHH
Confidence            764322   23456688999999999999999999999999998874   33333333344444444433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.37  E-value=2.5e-11  Score=96.19  Aligned_cols=135  Identities=14%  Similarity=-0.024  Sum_probs=105.7

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC----ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCC-
Q 010063          378 DLAELLHIVGRGQEGRELLEECLLITEKYKGKE----HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD-  452 (519)
Q Consensus       378 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-  452 (519)
                      ..|..+...|+|++|+..|++++++........    .+..+.++.++|.+|..+|++++|+..+++++.+..+..... 
T Consensus        14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~   93 (156)
T d2hr2a1          14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ   93 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccc
Confidence            347888899999999999999999987653211    233567899999999999999999999999999987764322 


Q ss_pred             --CcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhh
Q 010063          453 --DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLL  515 (519)
Q Consensus       453 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg  515 (519)
                        .+....+++++|.+|..+|++++|+..|++++++.++..+.. +..  ...+..++..+..+|
T Consensus        94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~-~~~--~~~~~~~~~~l~~lg  155 (156)
T d2hr2a1          94 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET-PGK--ERMMEVAIDRIAQLG  155 (156)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC-TTH--HHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchH-HHH--HHHHHHHHHHHHHcC
Confidence              244566789999999999999999999999999998765432 222  344566677766665

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=6.2e-12  Score=94.13  Aligned_cols=98  Identities=13%  Similarity=0.114  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (519)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (519)
                      +..+...|..++..|++++|+..|+++++.          .|..+.++..+|.+|...|++++|+..+++++.+.     
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~----------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----   67 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKL----------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-----   67 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CCcchhhhhcccccccccccccccchhhhhHHHhc-----
Confidence            455788999999999999999999999998          88889999999999999999999999999999875     


Q ss_pred             CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (519)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (519)
                        |....+++++|.++...|++++|+..|++++++
T Consensus        68 --p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~  100 (117)
T d1elwa_          68 --PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH  100 (117)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             --cchhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence              444557999999999999999999999999975

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.2e-11  Score=92.46  Aligned_cols=96  Identities=18%  Similarity=0.153  Sum_probs=88.0

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  326 (519)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  326 (519)
                      -+...|..+...|++++|+..|+++++.        .|....++.++|.+|..+|++++|+..+.+++++        .|
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p   68 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------KP   68 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHh--------cc
Confidence            3567899999999999999999999987        5777889999999999999999999999999986        45


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      ....++.++|.++..+|++++|+..|+++++.
T Consensus        69 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~  100 (117)
T d1elwa_          69 DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH  100 (117)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             chhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            66678999999999999999999999999986

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4.8e-11  Score=90.75  Aligned_cols=104  Identities=13%  Similarity=0.146  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC
Q 010063          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (519)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (519)
                      ....+.|..++..|+|++|+.+|++++++          .|..+.++.++|.+|..+|++++|+..+++++.+.......
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~----------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~   74 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKEL----------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED   74 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHH
Confidence            34667899999999999999999999998          77788899999999999999999999999999998877777


Q ss_pred             chHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (519)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (519)
                      .+..+.++..+|.++...+++++|+.+|++++..
T Consensus        75 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            7888889999999999999999999999999875

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.34  E-value=9.1e-10  Score=95.87  Aligned_cols=221  Identities=15%  Similarity=0.187  Sum_probs=162.3

Q ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHHhc
Q 010063          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVITILELNR  279 (519)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~  279 (519)
                      .+++.+|..+...|++.+|+.+|+++.+.      .+    ..++..||.+|..    ..++..|..+++.+...     
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~------g~----~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~-----   67 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDL------KE----NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-----   67 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT------TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHC------CC----HHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc-----
Confidence            35889999999999999999999999653      12    5678899999987    67899999999987653     


Q ss_pred             CCCChhhHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHH
Q 010063          280 GTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVEL  351 (519)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~  351 (519)
                        .   ...+...+|.++..    .++.+.|...++++.+.       ..   ..+...++..+..    ......|...
T Consensus        68 --~---~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~-------g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~  132 (265)
T d1ouva_          68 --N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------KY---AEGCASLGGIYHDGKVVTRDFKKAVEY  132 (265)
T ss_dssp             --T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             --c---ccchhhccccccccccccchhhHHHHHHHhhhhhh-------hh---hhHHHhhcccccCCCcccchhHHHHHH
Confidence              2   24556777877765    56789999999988762       12   2345556666664    4556677776


Q ss_pred             HHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 010063          352 YKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV----GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR  427 (519)
Q Consensus       352 ~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  427 (519)
                      +.+....         ..   ...+..+|.++...    .+...+..+++.+.+.       .   ...+..++|.+|..
T Consensus       133 ~~~~~~~---------~~---~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~-------g---~~~A~~~lg~~y~~  190 (265)
T d1ouva_         133 FTKACDL---------ND---GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------K---DSPGCFNAGNMYHH  190 (265)
T ss_dssp             HHHHHHT---------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHH
T ss_pred             hhhhhcc---------cc---cchhhhhhhhhccCCCcccccccchhhhhccccc-------c---ccccccchhhhccc
Confidence            6665442         12   23457889998873    4455666666665541       2   24678889999887


Q ss_pred             ----ccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh----cCChHHHHHHHHHHHHH
Q 010063          428 ----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYI  486 (519)
Q Consensus       428 ----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~  486 (519)
                          ..++++|+.+|+++.+.       .+   ..++++||.+|..    ..++++|.++|++|.+.
T Consensus       191 g~~~~~d~~~A~~~~~~aa~~-------g~---~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         191 GEGATKNFKEALARYSKACEL-------EN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             TCSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             CcccccchhhhhhhHhhhhcc-------cC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence                67899999999999772       22   4577899999986    44899999999999874

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=6.6e-11  Score=89.98  Aligned_cols=105  Identities=9%  Similarity=0.156  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (519)
                      +..+..+|..++..|+|++|+.+|++++++        +|....++.++|.+|..+|++++|+..+++++++..... ..
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~-~~   74 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-ED   74 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST-TC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH-HH
Confidence            445678999999999999999999999998        566688999999999999999999999999999876642 23


Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      .+..+.++..+|.++...+++++|+.+|++++..
T Consensus        75 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            4556789999999999999999999999999876

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.5e-11  Score=96.03  Aligned_cols=131  Identities=17%  Similarity=0.194  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010063          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS-------ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (519)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (519)
                      .+..+...|..++..|++++|+..|++++..........+       +....++.++|.+|...|++++|+.++++++.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            3445778999999999999999999999988644322221       234567888999999999999999999999998


Q ss_pred             HHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHH
Q 010063          275 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA  348 (519)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  348 (519)
                              +|....++..+|.+|..+|++++|+..|++++++        +|....+...++.+....++..+.
T Consensus        92 --------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          92 --------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence                    5677899999999999999999999999999986        234444566677776655555443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.5e-11  Score=95.13  Aligned_cols=133  Identities=9%  Similarity=0.039  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhc
Q 010063          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (519)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (519)
                      .....+...|..++..|+|++|+..|++++++          .|..+.++..+|.++...|++++|+..|++++++.   
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~----------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~---   74 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL----------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD---   74 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhcccc----------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc---
Confidence            34566888999999999999999999999998          88889999999999999999999999999999885   


Q ss_pred             CCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--HhhcCCHHHHHHHHHHHHH
Q 010063          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV--LGSIGRAKKAVEIYHRVIT  273 (519)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~  273 (519)
                          |....++..+|.++...|++++|+..+++++.+     .++++.   ++..++.+  ....+.+++|+........
T Consensus        75 ----p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~-----~p~~~~---~~~~l~~~~~~~~~~~~~~a~~~~~~~~~  142 (159)
T d1a17a_          75 ----KKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKD---AKMKYQECNKIVKQKAFERAIAGDEHKRS  142 (159)
T ss_dssp             ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHH---HHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence                555567999999999999999999999999986     233333   33334433  3344556666655444433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=8.2e-11  Score=94.47  Aligned_cols=134  Identities=13%  Similarity=0.069  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC-----chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063          328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD-----DSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (519)
Q Consensus       328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (519)
                      .+..+...|..++..|++++|+..|++++............     ......++.++|.+|.++|++++|+..+++++.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            45567789999999999999999999999986543111110     1234566788999999999999999999999986


Q ss_pred             HHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHH
Q 010063          403 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE  477 (519)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  477 (519)
                              +|....++..+|.+|..+|++++|+..|++++++        +|....+...++.+....++..+..
T Consensus        92 --------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1          92 --------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                    4556788999999999999999999999999985        2444555667777777666555443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.26  E-value=5.7e-11  Score=93.54  Aligned_cols=127  Identities=17%  Similarity=0.084  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCh--------hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010063          374 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP--------SFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (519)
Q Consensus       374 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (519)
                      ..+...|..+...|+|.+|+..|++++.+..........        ....++.++|.+|..+|++++|+.++++++.+ 
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~-   96 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-   96 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc-
Confidence            345678999999999999999999999876443222211        23457889999999999999999999999985 


Q ss_pred             HHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063          446 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYK  518 (519)
Q Consensus       446 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~k  518 (519)
                             +|....+++.+|.+|..+|++++|+..|++++++.     |+++.     +...++.+...+++.+
T Consensus        97 -------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-----P~n~~-----~~~~l~~~~~kl~~~~  152 (153)
T d2fbna1          97 -------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-----PNNLD-----IRNSYELCVNKLKEAR  152 (153)
T ss_dssp             -------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTCHH-----HHHHHHHHHHHHHHHH
T ss_pred             -------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH-----HHHHHHHHHHHHHHHC
Confidence                   46778899999999999999999999999999874     44443     3667888887776654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.26  E-value=2.7e-09  Score=92.74  Aligned_cols=222  Identities=15%  Similarity=0.144  Sum_probs=163.8

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHc----cccHHHHHHHHHHHHHHHHHhc
Q 010063          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYST----LENYEKSMLVYQRVINVLESRY  237 (519)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~  237 (519)
                      |.+++.+|..+...||+++|+++|+++.+.-      +   ..+.+.||.+|..    ..++..|..+++.+...     
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g------~---~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~-----   67 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK------E---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-----   67 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC------C---HHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc-----
Confidence            5688999999999999999999999986531      1   2457889999986    67899999999887653     


Q ss_pred             CCCCHHHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh----CCCHHHHHHH
Q 010063          238 GKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESV  309 (519)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~  309 (519)
                        .+   ..+...+|.++..    ..+.+.|...++++.+.       .   ...+...++..+..    ......|...
T Consensus        68 --~~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~-------g---~~~a~~~l~~~~~~~~~~~~~~~~a~~~  132 (265)
T d1ouva_          68 --NY---SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------K---YAEGCASLGGIYHDGKVVTRDFKKAVEY  132 (265)
T ss_dssp             --TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             --cc---cchhhccccccccccccchhhHHHHHHHhhhhhh-------h---hhhHHHhhcccccCCCcccchhHHHHHH
Confidence              22   3445567776654    57889999999988753       1   23455667766664    4556777777


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH
Q 010063          310 FSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI  385 (519)
Q Consensus       310 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~  385 (519)
                      +.+....          ....++..+|..+..    ..+...+..+++.+.+.        . +   ..+..++|.+|..
T Consensus       133 ~~~~~~~----------~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~--------g-~---~~A~~~lg~~y~~  190 (265)
T d1ouva_         133 FTKACDL----------NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--------K-D---SPGCFNAGNMYHH  190 (265)
T ss_dssp             HHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------T-C---HHHHHHHHHHHHH
T ss_pred             hhhhhcc----------cccchhhhhhhhhccCCCcccccccchhhhhccccc--------c-c---cccccchhhhccc
Confidence            7766542          233467888999886    45677777777776653        1 1   3456889999987


Q ss_pred             ----cCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHH
Q 010063          386 ----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR----SKNFVEAERLLRICLDI  444 (519)
Q Consensus       386 ----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  444 (519)
                          ..++++|+.+|+++.+.       .+   ..++++||.+|..    ..++++|..+|++|...
T Consensus       191 g~~~~~d~~~A~~~~~~aa~~-------g~---~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         191 GEGATKNFKEALARYSKACEL-------EN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             TCSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             CcccccchhhhhhhHhhhhcc-------cC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence                67899999999998763       23   3578899999986    44899999999999874

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=8.3e-11  Score=97.89  Aligned_cols=101  Identities=19%  Similarity=0.158  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (519)
                      +..+...|..++..|+|++|+.+|++++++        .|..+.++.++|.+|...|++++|+..|++++++        
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--------   67 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------   67 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--------
Confidence            445678899999999999999999999998        5677899999999999999999999999999874        


Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (519)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (519)
                      +|....++.++|.+|..+|++++|+..|++++.+...
T Consensus        68 ~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            5777789999999999999999999999999998765

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.25  E-value=2.6e-10  Score=91.36  Aligned_cols=139  Identities=18%  Similarity=0.296  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010063          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT-------SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (519)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (519)
                      +..+...|..++..|+|.+|+..|.+++..........       .+....++.++|.+|..+|++++|+..+++++.+ 
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l-   93 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-   93 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc-
Confidence            44578899999999999999999999998764432221       1245667889999999999999999999999987 


Q ss_pred             HHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHH-HHHHHHH
Q 010063          276 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE-AVELYKK  354 (519)
Q Consensus       276 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~  354 (519)
                             +|....+++.+|.++..+|++++|+..|++++.+        +|....+...++.+....+.+.+ ....+.+
T Consensus        94 -------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~  158 (168)
T d1kt1a1          94 -------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQIFMCQKKAKEHNERDRRTYAN  158 (168)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence                   5677899999999999999999999999999985        45555567777777666555443 3344444


Q ss_pred             HHH
Q 010063          355 ALR  357 (519)
Q Consensus       355 al~  357 (519)
                      ..+
T Consensus       159 ~f~  161 (168)
T d1kt1a1         159 MFK  161 (168)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            433

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=5.9e-10  Score=99.40  Aligned_cols=226  Identities=9%  Similarity=-0.027  Sum_probs=159.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-------hc-------CChHHHHHHHHHHHhhhhhcCCCch
Q 010063          135 NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYV-------YI-------GDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       135 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~-------g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      +.+...|++|+..          .|..+.+|...+....       ..       +..++|..++++++...   .   |
T Consensus        33 ~Rv~~vyerAl~~----------~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~---~---p   96 (308)
T d2onda1          33 KRVMFAYEQCLLV----------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL---L---K   96 (308)
T ss_dssp             HHHHHHHHHHHHH----------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT---T---T
T ss_pred             HHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHc---C---C
Confidence            4566678888776          3333444544443332       22       33466677777776542   2   2


Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (519)
                      .....+...+..+...|++++|...|++++..     .+.+  ...++...+......|++++|...|+++++.      
T Consensus        97 ~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~-----~~~~--~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~------  163 (308)
T d2onda1          97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDID--PTLVYIQYMKFARRAEGIKSGRMIFKKARED------  163 (308)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSC--THHHHHHHHHHHHHHHCHHHHHHHHHHHHTS------
T ss_pred             CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-----hcCC--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------
Confidence            22335778889999999999999999998864     1222  2345667788889999999999999999864      


Q ss_pred             CCChhhHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010063          281 TESADLVLPLFSLGSLF-IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (519)
Q Consensus       281 ~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (519)
                        .|.....+...+... ...|+.+.|...|++++...        |.....+...+......|+++.|..+|++++...
T Consensus       164 --~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--------p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~  233 (308)
T d2onda1         164 --ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG  233 (308)
T ss_dssp             --TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred             --CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence              344456666777664 45689999999999999853        4445677888999999999999999999998752


Q ss_pred             HhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010063          360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  405 (519)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  405 (519)
                      .      .++......+..........|+.+.+..+++++.+.+..
T Consensus       234 ~------~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~  273 (308)
T d2onda1         234 S------LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  273 (308)
T ss_dssp             S------SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred             C------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcc
Confidence            1      122222345566677777889999999999998877643

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.24  E-value=4.2e-11  Score=88.60  Aligned_cols=94  Identities=15%  Similarity=0.045  Sum_probs=86.2

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  326 (519)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  326 (519)
                      ..+.+|..+...|++++|+..+++++..        .|....++..+|.++...|++++|+..+++++++        +|
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p   81 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP   81 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhhhhHHHhhccccccccc--------cc
Confidence            3567899999999999999999999987        5677899999999999999999999999999996        56


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010063          327 RVGMAMCSLAHAKCANGNAEEAVELYKKAL  356 (519)
Q Consensus       327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al  356 (519)
                      ....++..+|.+|...|++++|++.+++.+
T Consensus        82 ~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          82 KDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            777899999999999999999999999875

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.24  E-value=7.7e-11  Score=92.78  Aligned_cols=122  Identities=12%  Similarity=0.111  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010063          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI--------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (519)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (519)
                      +..+...|..++..|+|.+|+..|++++.........+..        ....++.++|.+|..+|++++|+..+++++++
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~   96 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI   96 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc
Confidence            3457788999999999999999999999875443222221        23567889999999999999999999999987


Q ss_pred             HHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 010063          275 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC  340 (519)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  340 (519)
                              +|....+++.+|.++..+|++++|+..|++++++        .|....+...++.+..
T Consensus        97 --------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          97 --------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--------NPNNLDIRNSYELCVN  146 (153)
T ss_dssp             --------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHH
T ss_pred             --------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHH
Confidence                    6777899999999999999999999999999997        2444444555555443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=2.4e-11  Score=101.22  Aligned_cols=101  Identities=11%  Similarity=0.035  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (519)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (519)
                      ...+...|..++..|+|++|+..|++++++          .|..+.++..+|.+|...|++++|+..|++++.+.     
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~----------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-----   68 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITR----------NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-----   68 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-----
Confidence            345788999999999999999999999998          78889999999999999999999999999998764     


Q ss_pred             CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH
Q 010063          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLES  235 (519)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  235 (519)
                        |....+++++|.+|..+|++++|+..|++++.+...
T Consensus        69 --p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          69 --GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             --CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence              555667999999999999999999999999998654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.22  E-value=1.7e-10  Score=92.70  Aligned_cols=127  Identities=13%  Similarity=0.139  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010063          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG--------KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (519)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (519)
                      .+...|..++..|++.+|+..|.+++........        ...|....++.++|.++..+|++++|+..+++++++  
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--  106 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--  106 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh--
Confidence            3567788999999999999999999987543211        123567778999999999999999999999999986  


Q ss_pred             HhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHH
Q 010063          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE  347 (519)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  347 (519)
                            .|..+.++..+|.+|..+|++++|+..|++++++        .|....+...++.+........+
T Consensus       107 ------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--------~p~n~~~~~~l~~~~~~l~~~~~  163 (169)
T d1ihga1         107 ------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKD  163 (169)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             ------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHH
Confidence                  5777899999999999999999999999999996        23334455666666554444333

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=2.6e-09  Score=95.14  Aligned_cols=223  Identities=14%  Similarity=0.107  Sum_probs=156.3

Q ss_pred             HHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHH--------------ccccHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 010063          179 KFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYS--------------TLENYEKSMLVYQRVINVLESRYGKTSILL  244 (519)
Q Consensus       179 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  244 (519)
                      +.+..+|++|+...    +.++.   +|...+..+.              ..+..++|...|+++++..       .|..
T Consensus        33 ~Rv~~vyerAl~~~----~~~~~---lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~-------~p~~   98 (308)
T d2onda1          33 KRVMFAYEQCLLVL----GHHPD---IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-------LKKN   98 (308)
T ss_dssp             HHHHHHHHHHHHHH----TTCHH---HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-------TTTC
T ss_pred             HHHHHHHHHHHHHC----CCCHH---HHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHc-------CCCC
Confidence            44566777777665    22233   3444433332              2234456666666665431       2233


Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (519)
                      ...+...+..+...|++++|...|+++++.       .+.....++...+......|+++.|...|+++++.        
T Consensus        99 ~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~-------~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~--------  163 (308)
T d2onda1          99 MLLYFAYADYEESRMKYEKVHSIYNRLLAI-------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--------  163 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--------
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHH-------hcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------
Confidence            456777889999999999999999999864       22233456788888999999999999999999863        


Q ss_pred             ChhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010063          325 DGRVGMAMCSLAHAKC-ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (519)
Q Consensus       325 ~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (519)
                      .|.....+...+.... ..|+.+.|..+|++++...       ++.   ...+...+..+...|++++|..+|++++...
T Consensus       164 ~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-------p~~---~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~  233 (308)
T d2onda1         164 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-------GDI---PEYVLAYIDYLSHLNEDNNTRVLFERVLTSG  233 (308)
T ss_dssp             TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-------TTC---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred             CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-------hhh---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence            2333345566666544 4689999999999999874       233   3455778899999999999999999998742


Q ss_pred             HHhhCCCCh-hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010063          404 EKYKGKEHP-SFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (519)
Q Consensus       404 ~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (519)
                           +.+| .....+..........|+.+.+..+++++.+.+
T Consensus       234 -----~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~  271 (308)
T d2onda1         234 -----SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF  271 (308)
T ss_dssp             -----SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred             -----CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence                 1222 223456666777778899999999999988865

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.18  E-value=1e-10  Score=86.52  Aligned_cols=93  Identities=13%  Similarity=0.016  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (519)
                      .+..|..+...|++++|+..+++++..          .|..+.++..+|.++...|++++|+..+++++++.       |
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~----------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p   81 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQK----------EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------P   81 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH----------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhccc----------ccccchhhhhhhhhhhhhhhHHHhhcccccccccc-------c
Confidence            456788999999999999999999998          78889999999999999999999999999999885       5


Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVI  230 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  230 (519)
                      ....++..+|.+|...|++++|++.+++.+
T Consensus        82 ~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          82 KDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            556679999999999999999999999875

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.17  E-value=5.2e-10  Score=89.56  Aligned_cols=129  Identities=12%  Similarity=0.080  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCc--------hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063          161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE--------PLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (519)
Q Consensus       161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (519)
                      .+..+...|..++..|+|.+|+..|.+++..........        +....++.++|.+|...|++++|+..+++++.+
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence            456678899999999999999999999998764432221        224556888999999999999999999999987


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHH
Q 010063          233 LESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD  305 (519)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  305 (519)
                              +|....+++.+|.++..+|++++|+..|++++++        .|....+...++.+....+.+.+
T Consensus        94 --------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1          94 --------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             --------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhHHH
Confidence                    2444788999999999999999999999999986        45566777778877766655543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.15  E-value=4.8e-10  Score=90.01  Aligned_cols=127  Identities=16%  Similarity=0.149  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC--------CCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG--------TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (519)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (519)
                      ..+...|..+...|+|.+|+..|+++++.......        ...|....++.++|.++..+|++++|+..+++++++ 
T Consensus        28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~-  106 (169)
T d1ihga1          28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-  106 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-
Confidence            34556788999999999999999999987543221        123566778999999999999999999999999984 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChH
Q 010063          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ  390 (519)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  390 (519)
                             +|....++.++|.++..+|++++|+..|++++++       .|+.+.   +...++.+........
T Consensus       107 -------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l-------~p~n~~---~~~~l~~~~~~l~~~~  162 (169)
T d1ihga1         107 -------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-------APEDKA---IQAELLKVKQKIKAQK  162 (169)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHH---HHHHHHHHHHHHHHHH
T ss_pred             -------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh-------CCCCHH---HHHHHHHHHHHHHHHH
Confidence                   5777789999999999999999999999999998       344443   3355566655444333

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.2e-10  Score=85.53  Aligned_cols=112  Identities=6%  Similarity=-0.039  Sum_probs=87.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHc---cccHHHHHHHHHHHHHHHHHhcCCCCH
Q 010063          166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYST---LENYEKSMLVYQRVINVLESRYGKTSI  242 (519)
Q Consensus       166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~  242 (519)
                      ..++..+...+++++|++.|++++.+.       |....+++++|.++..   .+++++|+..+++++..      ...+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-------p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~------~~~~   69 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-------SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK------GSKE   69 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-------CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT------SCHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc------cCCc
Confidence            356677888999999999999999875       4444569999999976   45666788888887753      1234


Q ss_pred             HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 010063          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFI  298 (519)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  298 (519)
                      ....+++++|.+|...|++++|+.+|++++++        .|....+...++.+..
T Consensus        70 ~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~--------~P~~~~A~~l~~~I~~  117 (122)
T d1nzna_          70 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------EPQNNQAKELERLIDK  117 (122)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHH
Confidence            55678999999999999999999999999998        4555666666665543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.9e-09  Score=79.30  Aligned_cols=96  Identities=10%  Similarity=0.023  Sum_probs=80.1

Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHHhcCCCC
Q 010063          249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK---AVDAESVFSRILKIYTKVYGEND  325 (519)
Q Consensus       249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~  325 (519)
                      .+++..+...+++++|++.|++++.+        .|....+++++|.++...++   +++|+..+++++..      ...
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~------~~~   68 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK------GSK   68 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT------SCH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc------cCC
Confidence            35677888899999999999999997        67778999999999987554   45688888887753      112


Q ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (519)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (519)
                      +....+++++|.+|...|++++|+.+|++++++
T Consensus        69 ~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            344668999999999999999999999999998

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.5e-09  Score=77.12  Aligned_cols=90  Identities=9%  Similarity=0.013  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCC
Q 010063          415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD  494 (519)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  494 (519)
                      +..++.+|.++...|+|++|+.+|++|+++..... ...+....++.+||.++...|++++|+.+|++++++.     |+
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~-~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-----P~   78 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-----PE   78 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhh-ccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-----cC
Confidence            34567899999999999999999999999876542 3345677899999999999999999999999999874     56


Q ss_pred             CCcchhhHHHHHHHHHHHHhh
Q 010063          495 SLPVGKLFCFVLFGLVWFCLL  515 (519)
Q Consensus       495 ~~~~~~~~~~~~l~~~~~~lg  515 (519)
                      |+     .++++++.+...++
T Consensus        79 ~~-----~a~~Nl~~~~~~l~   94 (95)
T d1tjca_          79 HQ-----RANGNLKYFEYIMA   94 (95)
T ss_dssp             CH-----HHHHHHHHHHHHHH
T ss_pred             CH-----HHHHHHHHHHHHhC
Confidence            65     44888888776654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2e-09  Score=76.41  Aligned_cols=86  Identities=14%  Similarity=0.101  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA  284 (519)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  284 (519)
                      -.+.+|.++...|+|.+|+.+|++|+++..... ...+..+.++.++|.++...|++++|+.+|++++++        .|
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~-~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--------~P   77 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------DP   77 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhh-ccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--------Cc
Confidence            368999999999999999999999999876542 233466789999999999999999999999999998        56


Q ss_pred             hhHHHHHHHHHHHHh
Q 010063          285 DLVLPLFSLGSLFIK  299 (519)
Q Consensus       285 ~~~~~~~~la~~~~~  299 (519)
                      ....++.+++.+...
T Consensus        78 ~~~~a~~Nl~~~~~~   92 (95)
T d1tjca_          78 EHQRANGNLKYFEYI   92 (95)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            667888888765543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.91  E-value=1.3e-09  Score=84.44  Aligned_cols=112  Identities=7%  Similarity=0.012  Sum_probs=73.4

Q ss_pred             HHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHH
Q 010063          129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH  208 (519)
Q Consensus       129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (519)
                      -+.+.+++|+..|++++++          .|..+.++..+|.++...+++..+.+                         
T Consensus         8 ~r~~~fe~A~~~~e~al~~----------~P~~~~~~~~~g~~l~~~~~~~~~~e-------------------------   52 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKS----------NPLDADNLTRWGGVLLELSQFHSISD-------------------------   52 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHHHHSCHHH-------------------------
T ss_pred             HHHccHHHHHHHHHHHHhh----------CCcchHHHHHHHHHHHHhhhhhhhhH-------------------------
Confidence            4455678888888888887          77778888888888876555443322                         


Q ss_pred             HHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcC-----------CHHHHHHHHHHHHHHHHH
Q 010063          209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-----------RAKKAVEIYHRVITILEL  277 (519)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~  277 (519)
                            ..+.+++|+..|++++++        +|....+++++|.+|..+|           .+++|.++|++++++   
T Consensus        53 ------~~~~~~~Ai~~~~kAl~l--------~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l---  115 (145)
T d1zu2a1          53 ------AKQMIQEAITKFEEALLI--------DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE---  115 (145)
T ss_dssp             ------HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             ------HHHHHHHHHHHHHHHHHh--------cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc---
Confidence                  123445666666666654        2333555666666666554           367888888888887   


Q ss_pred             hcCCCChhhHHHHHHHHHHH
Q 010063          278 NRGTESADLVLPLFSLGSLF  297 (519)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~  297 (519)
                           .|.....+..|+.+.
T Consensus       116 -----~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1         116 -----QPDNTHYLKSLEMTA  130 (145)
T ss_dssp             -----CTTCHHHHHHHHHHH
T ss_pred             -----CCCHHHHHHHHHHHH
Confidence                 455666777777664

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.86  E-value=3.9e-09  Score=81.73  Aligned_cols=104  Identities=12%  Similarity=0.084  Sum_probs=79.4

Q ss_pred             HHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc----------CCHHHHHHHHHHHHHHHHHhcCC
Q 010063          212 MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI----------GRAKKAVEIYHRVITILELNRGT  281 (519)
Q Consensus       212 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~  281 (519)
                      .+.+.+.|++|+..|++++++        +|..+.++.++|.++...          +.+++|+..|++++++       
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~--------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l-------   70 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-------   70 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHccHHHHHHHHHHHHhh--------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-------
Confidence            356678899999999999987        355578888999998754          4557899999999987       


Q ss_pred             CChhhHHHHHHHHHHHHhCCC-----------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 010063          282 ESADLVLPLFSLGSLFIKEGK-----------AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK  339 (519)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  339 (519)
                       +|....+++++|.+|..+|+           +++|..+|++++++        +|.....+..|+...
T Consensus        71 -~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--------~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1          71 -DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--------QPDNTHYLKSLEMTA  130 (145)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH
T ss_pred             -cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--------CCCHHHHHHHHHHHH
Confidence             67778899999999987654           57777777777775        355455566666553

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.61  E-value=5.5e-07  Score=71.83  Aligned_cols=116  Identities=10%  Similarity=-0.026  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC--------------CHHHHHHHHHHHHHHhhcCCHHHHHH
Q 010063          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT--------------SILLVTSLLGMAKVLGSIGRAKKAVE  266 (519)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~~~~~~~~~la~~~~~~g~~~~A~~  266 (519)
                      .....+...|......|++++|...|.+|+.++......+              .+....++..++.++...|++++|+.
T Consensus         9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~   88 (179)
T d2ff4a2           9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA   88 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence            3455688899999999999999999999998753211110              12345778899999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063          267 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (519)
Q Consensus       267 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (519)
                      .+++++++        +|....++..++.++...|++.+|+..|+++.....+.+|..
T Consensus        89 ~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~  138 (179)
T d2ff4a2          89 ELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID  138 (179)
T ss_dssp             HHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999998        677889999999999999999999999999999887766654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.59  E-value=3.4e-07  Score=73.10  Aligned_cols=115  Identities=11%  Similarity=-0.129  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC--------------ChhHHHHHHHHHHHHHhccCHHHHHHH
Q 010063          372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE--------------HPSFVTHLLNLAASYSRSKNFVEAERL  437 (519)
Q Consensus       372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~~~~~~~~~la~~~~~~g~~~~A~~~  437 (519)
                      ....+...|......|++++|...|.+++.++....-.+              .+....++..++.++...|++++|+.+
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~   89 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            355678899999999999999999999998753221000              123456788999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCC
Q 010063          438 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD  494 (519)
Q Consensus       438 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  494 (519)
                      +++++.+        +|....++..++.++...|++.+|+..|+++.+...+-+|.+
T Consensus        90 ~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~  138 (179)
T d2ff4a2          90 LEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID  138 (179)
T ss_dssp             HHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999994        567778899999999999999999999999999988777754

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.46  E-value=1.2e-07  Score=80.93  Aligned_cols=127  Identities=10%  Similarity=-0.020  Sum_probs=99.7

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHH
Q 010063          125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA  204 (519)
Q Consensus       125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  204 (519)
                      +...+..|++++|+..++++++.          .|..+.++..+|.++...|++++|+..++++.++.       |....
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~----------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-------P~~~~   65 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKA----------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-------PEYLP   65 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHT----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------GGGHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCcHH
Confidence            45667899999999999999998          89999999999999999999999999999998875       55555


Q ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010063          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (519)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (519)
                      .+..++.++...+...++...+.+..       -...|.....+...+..+...|++++|...++++.+..
T Consensus        66 ~~~~l~~ll~a~~~~~~a~~~~~~~~-------~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          66 GASQLRHLVKAAQARKDFAQGAATAK-------VLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCCCEE-------CCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhccccHHHHHHhhhhh-------cccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            66777777766655554433222111       11234455667778999999999999999999998873

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.40  E-value=3.3e-07  Score=78.16  Aligned_cols=126  Identities=17%  Similarity=0.143  Sum_probs=96.3

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 010063          337 HAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVT  416 (519)
Q Consensus       337 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  416 (519)
                      .-....|++++|+..++++++.       .|++   ...+..++.++...|++++|+..+++++++        .|....
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~-------~P~d---~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--------~P~~~~   65 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKA-------SPKD---ASLRSSFIELLCIDGDFERADEQLMQSIKL--------FPEYLP   65 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHT-------CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CGGGHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHH-------CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCcHH
Confidence            3456789999999999999987       3444   456789999999999999999999999885        456667


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063          417 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (519)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (519)
                      .+..++.++...+..+++...+.+..       -..+|.....+...+..+...|++++|...++++.+..
T Consensus        66 ~~~~l~~ll~a~~~~~~a~~~~~~~~-------~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          66 GASQLRHLVKAAQARKDFAQGAATAK-------VLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCCCEE-------CCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhccccHHHHHHhhhhh-------cccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            77778887776666555433222111       12345566677788999999999999999999998865

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.82  E-value=8.6e-05  Score=55.58  Aligned_cols=108  Identities=19%  Similarity=0.171  Sum_probs=80.6

Q ss_pred             CHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 010063          344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA  423 (519)
Q Consensus       344 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  423 (519)
                      ++++|+.+|+++.+.       + +.    ....+++.  ....+.++|+.+++++.+.       .+   ..+...||.
T Consensus         8 d~~~A~~~~~kaa~~-------g-~~----~a~~~l~~--~~~~~~~~a~~~~~~aa~~-------g~---~~a~~~Lg~   63 (133)
T d1klxa_           8 DLKKAIQYYVKACEL-------N-EM----FGCLSLVS--NSQINKQKLFQYLSKACEL-------NS---GNGCRFLGD   63 (133)
T ss_dssp             HHHHHHHHHHHHHHT-------T-CT----THHHHHHT--CTTSCHHHHHHHHHHHHHT-------TC---HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHC-------C-Ch----hhhhhhcc--ccccCHHHHHHHHhhhhcc-------cc---hhhhhhHHH
Confidence            678999999998764       1 11    12244543  3456889999999988652       23   357788999


Q ss_pred             HHHh----ccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh----cCChHHHHHHHHHHHH
Q 010063          424 SYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALY  485 (519)
Q Consensus       424 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~  485 (519)
                      +|..    ..++++|..+|+++.+.       .+   ..+...||.+|..    ..+.++|..+|++|.+
T Consensus        64 ~y~~g~~~~~d~~~A~~~~~~aa~~-------g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~  123 (133)
T d1klxa_          64 FYENGKYVKKDLRKAAQYYSKACGL-------ND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  123 (133)
T ss_dssp             HHHHCSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             hhhhccccchhhHHHHHHHhhhhcc-------Cc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence            9875    56789999999999872       22   4567899999987    5689999999999976

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.82  E-value=0.00014  Score=54.35  Aligned_cols=110  Identities=17%  Similarity=0.222  Sum_probs=83.8

Q ss_pred             ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 010063          217 ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSL  296 (519)
Q Consensus       217 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  296 (519)
                      .|+++|+.+|+++.+.       .+   ..+...++.  ....++++|+.+++++.+.          ....+.+.||.+
T Consensus         7 kd~~~A~~~~~kaa~~-------g~---~~a~~~l~~--~~~~~~~~a~~~~~~aa~~----------g~~~a~~~Lg~~   64 (133)
T d1klxa_           7 KDLKKAIQYYVKACEL-------NE---MFGCLSLVS--NSQINKQKLFQYLSKACEL----------NSGNGCRFLGDF   64 (133)
T ss_dssp             HHHHHHHHHHHHHHHT-------TC---TTHHHHHHT--CTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHC-------CC---hhhhhhhcc--ccccCHHHHHHHHhhhhcc----------cchhhhhhHHHh
Confidence            4789999999998764       12   223445543  4567899999999998753          235678899999


Q ss_pred             HHh----CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Q 010063          297 FIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRV  358 (519)
Q Consensus       297 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  358 (519)
                      |..    ..++++|..+|+++.+.       .+   ..+..+||.+|..    ..++++|..+|+++.+.
T Consensus        65 y~~g~~~~~d~~~A~~~~~~aa~~-------g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          65 YENGKYVKKDLRKAAQYYSKACGL-------ND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             HHHCSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             hhhccccchhhHHHHHHHhhhhcc-------Cc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            886    56789999999999863       22   3467889999987    56899999999998875

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.31  E-value=0.0025  Score=45.42  Aligned_cols=64  Identities=5%  Similarity=-0.086  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHcc---ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010063          204 AILLHMGSMYSTL---ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (519)
Q Consensus       204 ~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (519)
                      .+.++.|+++...   .+.++|+..+++++..       +......+++.+|..|+..|+|++|..++++++++
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            4577888888744   5677888888877653       22234678999999999999999999999999998

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.28  E-value=0.0013  Score=46.90  Aligned_cols=65  Identities=15%  Similarity=0.051  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHhhc---CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063          245 VTSLLGMAKVLGSI---GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (519)
Q Consensus       245 ~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (519)
                      ..+.++.|+++...   .+.++|+.++++++..       ++.....+++.||..|.+.|+|++|..++++++++
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            56788889888865   4556788888887754       23344689999999999999999999999999997

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=95.11  E-value=0.56  Score=36.92  Aligned_cols=187  Identities=8%  Similarity=-0.042  Sum_probs=108.0

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhccCCCC
Q 010063          290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKALRVIKDSNYMSLD  368 (519)
Q Consensus       290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~  368 (519)
                      ...+|.+....|+|++.....++++++......+-...   =.+.+..+|-. .|....+...+....   .+   ... 
T Consensus         7 ~~y~Akl~eqa~ryddm~~~mK~~v~~~~~~n~eLt~e---ERnLLsvayKn~i~~~R~s~R~i~~ie---~k---~~~-   76 (220)
T d2o8pa1           7 QKYRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDDE---ERHLLTLCIKHKISDYRTMTSQVLQEQ---TK---QLN-   76 (220)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---SCS-
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHhhhcccCccCCHH---HHHHHHHHHHHHHhhhHHHHHHHHHHH---Hh---hcc-
Confidence            44578899999999999999999998754321111111   11222222211 233334444333211   11   011 


Q ss_pred             chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH-----hccCHHHHHHHHHHHHH
Q 010063          369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS-----RSKNFVEAERLLRICLD  443 (519)
Q Consensus       369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~  443 (519)
                      .....    .+..-|.. .=-.+=...+...+.+....+.+........+-..|..|.     ..|.-++|...|++|..
T Consensus        77 ~~~~~----~~~~~y~~-~i~~el~~~c~~i~~lid~~L~~~~eskVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~  151 (220)
T d2o8pa1          77 NDELV----KICSEYVF-SLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFT  151 (220)
T ss_dssp             CHHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             chhHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            11111    11111111 1112334455556666555543322122223333455443     56888999999999999


Q ss_pred             HHHHhcCCCCcchhHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhc
Q 010063          444 IMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREIAF  491 (519)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~  491 (519)
                      +....+.|.||-......+.+..|+. .++.++|.+..++|.+.+++..
T Consensus       152 ia~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~fdeai  200 (220)
T d2o8pa1         152 LLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILELQI  200 (220)
T ss_dssp             HHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            99888888899888888888887765 7999999999999966555544

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=94.42  E-value=1.6  Score=39.02  Aligned_cols=307  Identities=9%  Similarity=0.004  Sum_probs=154.7

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC
Q 010063          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (519)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (519)
                      +..+..+...+..|++.++..+..+.           .+.|-.+.+.+.............+...++++        .++
T Consensus         7 r~~y~~a~~a~~~~~~~~~~~~~~~L-----------~dypL~pYl~~~~l~~~~~~~~~~~i~~Fl~~--------~p~   67 (450)
T d1qsaa1           7 RSRYAQIKQAWDNRQMDVVEQMMPGL-----------KDYPLYPYLEYRQITDDLMNQPAVTVTNFVRA--------NPT   67 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHSGGG-----------TTSTTHHHHHHHHHHHTGGGCCHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHhhh-----------cCCCCHHHHHHHHHHhccccCCHHHHHHHHHH--------CCC
Confidence            34667788888999988877655442           11333333322222222223344443333332        345


Q ss_pred             chHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010063          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (519)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (519)
                      .|....+....-..+...+++...+.++            +..|.........+.+....|+..+|......+...    
T Consensus        68 ~P~~~~lr~~~l~~L~~~~~w~~~~~~~------------~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~----  131 (450)
T d1qsaa1          68 LPPARTLQSRFVNELARREDWRGLLAFS------------PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT----  131 (450)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHC------------CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC----
T ss_pred             ChhHHHHHHHHHHHHHhccCHHHHHHhc------------cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----
Confidence            5555444444444445556654433222            122323344445667777788888877665544311    


Q ss_pred             cCCCCh---------------hhHHHHHHHHHHHHhCCCHHHHHHHHHHH-----------HHHHHHh--------cCCC
Q 010063          279 RGTESA---------------DLVLPLFSLGSLFIKEGKAVDAESVFSRI-----------LKIYTKV--------YGEN  324 (519)
Q Consensus       279 ~~~~~~---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~~~--------~~~~  324 (519)
                       +...|               .....+..........|++..|.......           +.+....        ..+.
T Consensus       132 -~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~  210 (450)
T d1qsaa1         132 -GKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGA  210 (450)
T ss_dssp             -SSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCC
T ss_pred             -CCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCC
Confidence             11111               11112222334444556665555443221           1111000        0111


Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010063          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (519)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (519)
                      .+. .......+..-....+.+.|...+.......      .............++..+...+..+.|..........  
T Consensus       211 ~~~-~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~------~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~--  281 (450)
T d1qsaa1         211 TDF-TRQMAAVAFASVARQDAENARLMIPSLAQAQ------QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--  281 (450)
T ss_dssp             CHH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--
T ss_pred             Chh-hhHHHHHHHHHHhccChhHHHHHHHhhhhcc------cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc--
Confidence            111 1112233333344467777877776654431      2233334444445555555667777787776655431  


Q ss_pred             HhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010063          405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL  484 (519)
Q Consensus       405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  484 (519)
                          ........  ..++. ....+++..+...+...        ...........+.+|..+...|+.++|..+|..+.
T Consensus       282 ----~~~~~~~~--w~~~~-al~~~~~~~~~~~~~~l--------~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a  346 (450)
T d1qsaa1         282 ----SQSTSLIE--RRVRM-ALGTGDRRGLNTWLARL--------PMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM  346 (450)
T ss_dssp             ----CCCHHHHH--HHHHH-HHHHTCHHHHHHHHHHS--------CTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ----ccchHHHH--HHHHH-HHHcCChHHHHHHHHhc--------CcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence                12222222  22333 44567888877776542        22334456777999999999999999999999875


Q ss_pred             H
Q 010063          485 Y  485 (519)
Q Consensus       485 ~  485 (519)
                      .
T Consensus       347 ~  347 (450)
T d1qsaa1         347 Q  347 (450)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.97  E-value=1.6  Score=37.15  Aligned_cols=172  Identities=10%  Similarity=-0.010  Sum_probs=90.4

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 010063          166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLV  245 (519)
Q Consensus       166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  245 (519)
                      ..+|......|.|+.|..+|.....               +..+..++...+++..|.+...++          +.   .
T Consensus        18 ~~i~~~c~~~~lye~A~~lY~~~~d---------------~~rl~~~~v~l~~~~~avd~~~k~----------~~---~   69 (336)
T d1b89a_          18 QQVGDRCYDEKMYDAAKLLYNNVSN---------------FGRLASTLVHLGEYQAAVDGARKA----------NS---T   69 (336)
T ss_dssp             -----------CTTTHHHHHHHTTC---------------HHHHHHHHHTTTCHHHHHHHHHHH----------TC---H
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCC---------------HHHHHHHHHhhccHHHHHHHHHHc----------CC---H
Confidence            3567777888999999888875321               334556778889998888877654          12   2


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  325 (519)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  325 (519)
                      .++..+...+....+..-|.-.     ..       .......-...+...|...|.+++.+.+++..+..       . 
T Consensus        70 ~~~k~~~~~l~~~~e~~la~i~-----~~-------~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-------~-  129 (336)
T d1b89a_          70 RTWKEVCFACVDGKEFRLAQMC-----GL-------HIVVHADELEELINYYQDRGYFEELITMLEAALGL-------E-  129 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHT-----TT-------TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------T-
T ss_pred             HHHHHHHHHHHhCcHHHHHHHH-----HH-------HhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-------C-
Confidence            3445555666665555432111     00       01111233345667788889999999888877642       1 


Q ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHH---------HHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHH
Q 010063          326 GRVGMAMCSLAHAKCANGNAEEAVELYKK---------ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL  396 (519)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~---------al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  396 (519)
                      +.....+..++.+|.+.+ .++-.+++..         ++..+.+.           ..+..+..+|.+.|++++|+..+
T Consensus       130 ~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~-----------~l~~elv~Ly~~~~~~~~A~~~~  197 (336)
T d1b89a_         130 RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQA-----------HLWAELVFLYDKYEEYDNAIITM  197 (336)
T ss_dssp             TCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTT-----------TCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHc-----------CChHHHHHHHHhcCCHHHHHHHH
Confidence            122235667777776653 3343333332         22222211           11234566777788888777665


Q ss_pred             H
Q 010063          397 E  397 (519)
Q Consensus       397 ~  397 (519)
                      -
T Consensus       198 i  198 (336)
T d1b89a_         198 M  198 (336)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.51  E-value=4  Score=32.21  Aligned_cols=60  Identities=17%  Similarity=0.157  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHh
Q 010063          431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREIA  490 (519)
Q Consensus       431 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~  490 (519)
                      .+.|...|++|+++....+.|.||.......+.+..|+. .|+.++|.+..+++++-.-..
T Consensus       142 ~~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~ai~~  202 (230)
T d2o02a1         142 VDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAE  202 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            357999999999999888889999988888888877764 799999999999998766443

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=89.47  E-value=4  Score=32.29  Aligned_cols=185  Identities=12%  Similarity=0.010  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHc-cccHHHHHHHHHHHHHHHHHhcCCCC
Q 010063          163 AILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYST-LENYEKSMLVYQRVINVLESRYGKTS  241 (519)
Q Consensus       163 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~  241 (519)
                      .-+..++.+.-+.++|++...+..++...... ..-...-   .+.+..+|-. .|....+...+...... ...  ...
T Consensus         5 e~lv~~AklaeqaeRy~dm~~~mk~v~~~~~~-~~Ls~eE---RnLlsvayKn~i~~~R~s~r~l~~~e~k-~~~--~~~   77 (236)
T d1o9da_           5 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGS-EELTVEE---RNLLSVAYKNVIGARRASWRIISSIEQK-EES--RGN   77 (236)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSS-SCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHT--TTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCC-CCCCHHH---HHHHHHHHHHHhcchHHHHHHHHHHHHH-HHc--cCC
Confidence            34567788888899999999999988765211 0111111   2223333322 34444455544332221 111  111


Q ss_pred             HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC--CCh-hhHHHHHHHHHHHHhC-----CC-----HHHHHH
Q 010063          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT--ESA-DLVLPLFSLGSLFIKE-----GK-----AVDAES  308 (519)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~-~~~~~~~~la~~~~~~-----g~-----~~~A~~  308 (519)
                      +.....    ..-|. ..=-++=..++..++++.....-+  .++ ..+..+...|..|...     |+     .++|..
T Consensus        78 ~~~~~~----i~~yk-~kie~EL~~~C~~ii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~e~~~~~~~a~~  152 (236)
T d1o9da_          78 EEHVNS----IREYR-SKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLT  152 (236)
T ss_dssp             HHHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred             hHHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHhhchHHHHHHHhcCchhHHHHHHHHHH
Confidence            211111    11110 001112223445555554332111  122 2233333445554332     22     467899


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHH
Q 010063          309 VFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKALRVI  359 (519)
Q Consensus       309 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~  359 (519)
                      .|++|..+......+.+|.......|.+..++. .|+.++|....+++++..
T Consensus       153 aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~a  204 (236)
T d1o9da_         153 AYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  204 (236)
T ss_dssp             HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            999999999888888899877777777777665 699999999888877643

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=87.45  E-value=5.2  Score=31.14  Aligned_cols=185  Identities=12%  Similarity=0.018  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhhhhhcCCCc
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYV-YIGDLKFVQSLLDMMSGIVDSLKDDE  199 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (519)
                      ..-.|+..-..|+|++.++..++++++.....  ..-..+.   .+.+..+|- ..|....+...+.....   . ....
T Consensus         7 ~~y~Akl~eqa~ryddm~~~mK~~v~~~~~~n--~eLt~eE---RnLLsvayKn~i~~~R~s~R~i~~ie~---k-~~~~   77 (220)
T d2o8pa1           7 QKYRAQVFEWGGCFDKMFEALKSLIYLSEFEN--SEFDDEE---RHLLTLCIKHKISDYRTMTSQVLQEQT---K-QLNN   77 (220)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---H-SCSC
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHhhhcccC--ccCCHHH---HHHHHHHHHHHHhhhHHHHHHHHHHHH---h-hccc
Confidence            33467778889999999999999988743210  1112222   223333332 23444445444433221   1 1111


Q ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-----hcCCHHHHHHHHHHHHHH
Q 010063          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG-----SIGRAKKAVEIYHRVITI  274 (519)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~  274 (519)
                      .....    +..-|. ..--.+-...+...+.+....+.++....+-.+-..|..|.     ..|..++|...|++|.++
T Consensus        78 ~~~~~----~~~~y~-~~i~~el~~~c~~i~~lid~~L~~~~eskVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~i  152 (220)
T d2o8pa1          78 DELVK----ICSEYV-FSLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTL  152 (220)
T ss_dssp             HHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             hhHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            22111    111111 11223344555666666666554432222333333444443     468889999999999999


Q ss_pred             HHHhcCCCChhhHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHH
Q 010063          275 LELNRGTESADLVLPLFSLGSLF-IKEGKAVDAESVFSRILKIYTK  319 (519)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~  319 (519)
                      .....++.+|.......|.+..+ .-+++.++|..+.+.|.+.+..
T Consensus       153 a~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~fde  198 (220)
T d2o8pa1         153 LCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILEL  198 (220)
T ss_dssp             HHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            88777777777666666666555 4589999999999988654443

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=86.81  E-value=6.1  Score=31.21  Aligned_cols=183  Identities=9%  Similarity=0.055  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhhhhhcCCCc
Q 010063          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYV-YIGDLKFVQSLLDMMSGIVDSLKDDE  199 (519)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (519)
                      ++-.|+..-..++|++.+.+.+++++...    ...-..+.   .+.+..+|- ..|....+...+.......+..+  .
T Consensus         7 lv~~AklaeqaeRy~dm~~~mk~v~~~~~----~~~Ls~eE---RnLlsvayKn~i~~~R~s~r~l~~~e~k~~~~~--~   77 (236)
T d1o9da_           7 NVYMAKLAEQAERYEEMVEFMEKVSNSLG----SEELTVEE---RNLLSVAYKNVIGARRASWRIISSIEQKEESRG--N   77 (236)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTCS----SSCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--C
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhcC----CCCCCHHH---HHHHHHHHHHHhcchHHHHHHHHHHHHHHHccC--C
Confidence            66677777888999999999998876410    00112222   233344442 23444455555544332221111  1


Q ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHhhc-----CC-----HHHHHH
Q 010063          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG---KTSILLVTSLLGMAKVLGSI-----GR-----AKKAVE  266 (519)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~-----g~-----~~~A~~  266 (519)
                      +....    +..-|. ..=-++=.......+.+....+-   .+....+-.+...|..|...     |+     .++|..
T Consensus        78 ~~~~~----~i~~yk-~kie~EL~~~C~~ii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~e~~~~~~~a~~  152 (236)
T d1o9da_          78 EEHVN----SIREYR-SKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLT  152 (236)
T ss_dssp             HHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred             hHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHhhchHHHHHHHhcCchhHHHHHHHHHH
Confidence            11111    111111 11112223344444444432211   11122233333445544332     22     457899


Q ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHH
Q 010063          267 IYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIY  317 (519)
Q Consensus       267 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~  317 (519)
                      .|++|.++......+.+|.......|.+..++. .|+.++|....++++...
T Consensus       153 aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~a  204 (236)
T d1o9da_         153 AYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  204 (236)
T ss_dssp             HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            999999999887778888777777777766664 699999999888887643

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.62  E-value=2.4  Score=26.70  Aligned_cols=44  Identities=16%  Similarity=0.203  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChH
Q 010063          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIE  160 (519)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  160 (519)
                      ....+...|...-..|+|++|+.+|.++++.+.......++++.
T Consensus        10 ~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~~l~~e~~~~~   53 (77)
T d1wr0a1          10 KAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDK   53 (77)
T ss_dssp             HHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTGG
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCHH
Confidence            34457778888899999999999999999988776543433443

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=84.99  E-value=12  Score=32.95  Aligned_cols=199  Identities=9%  Similarity=-0.028  Sum_probs=116.1

Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 010063          252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA  331 (519)
Q Consensus       252 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  331 (519)
                      +..-....+.+.|...+......    ..............++......+..+.+..........      .......  
T Consensus       221 ~l~rla~~d~~~a~~~l~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~--  288 (450)
T d1qsaa1         221 AFASVARQDAENARLMIPSLAQA----QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR------SQSTSLI--  288 (450)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT------CCCHHHH--
T ss_pred             HHHHHhccChhHHHHHHHhhhhc----ccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc------ccchHHH--
Confidence            33334445677777766654432    11122223333344444455567777777777665431      1222222  


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-------HH
Q 010063          332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI-------TE  404 (519)
Q Consensus       332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~~  404 (519)
                       ..++......+++..+...+...          ...........+-+|..+...|+.++|..+|..+..-       ..
T Consensus       289 -~w~~~~al~~~~~~~~~~~~~~l----------~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa  357 (450)
T d1qsaa1         289 -ERRVRMALGTGDRRGLNTWLARL----------PMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAA  357 (450)
T ss_dssp             -HHHHHHHHHHTCHHHHHHHHHHS----------CTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHH
T ss_pred             -HHHHHHHHHcCChHHHHHHHHhc----------CcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHH
Confidence             22233345668888887766542          2333344566788999999999999999999886541       11


Q ss_pred             HhhCCC-------------ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcC
Q 010063          405 KYKGKE-------------HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN  471 (519)
Q Consensus       405 ~~~~~~-------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  471 (519)
                      ..+|..             .......-...+..+...|+...|...+..++.       ..++   .-...++.+..+.|
T Consensus       358 ~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~-------~~~~---~~~~~la~lA~~~g  427 (450)
T d1qsaa1         358 QRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK-------SKSK---TEQAQLARYAFNNQ  427 (450)
T ss_dssp             HHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TCCH---HHHHHHHHHHHHTT
T ss_pred             HHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHh-------CCCH---HHHHHHHHHHHHCC
Confidence            111210             001111223456778889999999988876653       1122   23456788889999


Q ss_pred             ChHHHHHHHHHH
Q 010063          472 RDKEAEKLVLEA  483 (519)
Q Consensus       472 ~~~~A~~~~~~a  483 (519)
                      .++.|+....++
T Consensus       428 ~~~~aI~a~~~~  439 (450)
T d1qsaa1         428 WWDLSVQATIAG  439 (450)
T ss_dssp             CHHHHHHHHHHT
T ss_pred             ChhHHHHHHHHH
Confidence            999999776655

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.53  E-value=10  Score=31.81  Aligned_cols=174  Identities=7%  Similarity=-0.056  Sum_probs=90.7

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchH
Q 010063          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL  201 (519)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  201 (519)
                      -..+..+.+.|.|+.|..+|...-+                  +..+..++...++++.|...+.+.-         .+.
T Consensus        18 ~~i~~~c~~~~lye~A~~lY~~~~d------------------~~rl~~~~v~l~~~~~avd~~~k~~---------~~~   70 (336)
T d1b89a_          18 QQVGDRCYDEKMYDAAKLLYNNVSN------------------FGRLASTLVHLGEYQAAVDGARKAN---------STR   70 (336)
T ss_dssp             -----------CTTTHHHHHHHTTC------------------HHHHHHHHHTTTCHHHHHHHHHHHT---------CHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCC------------------HHHHHHHHHhhccHHHHHHHHHHcC---------CHH
Confidence            3456777899999999998875321                  1334567788999999988876542         122


Q ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC
Q 010063          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT  281 (519)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  281 (519)
                         +|..+...+.......-+..     ...    ....++..   ...+...|...|.+++.+.+++.++..       
T Consensus        71 ---~~k~~~~~l~~~~e~~la~i-----~~~----~~~~~~d~---l~~~v~~ye~~~~~e~Li~~Le~~~~~-------  128 (336)
T d1b89a_          71 ---TWKEVCFACVDGKEFRLAQM-----CGL----HIVVHADE---LEELINYYQDRGYFEELITMLEAALGL-------  128 (336)
T ss_dssp             ---HHHHHHHHHHHTTCHHHHHH-----TTT----TTTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTS-------
T ss_pred             ---HHHHHHHHHHhCcHHHHHHH-----HHH----HhhcCHHH---HHHHHHHHHHcCChHHHHHHHHHHHcC-------
Confidence               35555555555554433211     000    01122322   234567778889999998888877642       


Q ss_pred             CChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChh-HH------HHHHHHHHHHHHCCCHHHHHHHHH
Q 010063          282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VG------MAMCSLAHAKCANGNAEEAVELYK  353 (519)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~------~~~~~la~~~~~~g~~~~A~~~~~  353 (519)
                       .+.....+..++.+|.+.+ .++-.++++..       .+.-++. ..      ..+..+..+|.+.|++++|...+-
T Consensus       129 -~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~-------s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i  198 (336)
T d1b89a_         129 -ERAHMGMFTELAILYSKFK-PQKMREHLELF-------WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM  198 (336)
T ss_dssp             -TTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH-------STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -CccchHHHHHHHHHHHHhC-hHHHHHHHHhc-------cccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHH
Confidence             2223456677888777654 34444443321       0001111 11      113445667778888888776543

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.16  E-value=4  Score=26.75  Aligned_cols=56  Identities=13%  Similarity=0.194  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 010063          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGY  172 (519)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~  172 (519)
                      .....++..|..+-..|+|++|+.+|.++++.+..... ...++.....+.....-|
T Consensus        13 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~-~e~~~~~k~~l~~k~~eY   68 (93)
T d1wfda_          13 TAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLK-GTKESSKRCVLRTKISGY   68 (93)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh-ccCCHHHHHHHHHHHHHH
Confidence            34455788899999999999999999999999887753 233445445554444444